BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013704
(438 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359481752|ref|XP_002270571.2| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Vitis vinifera]
gi|297740331|emb|CBI30513.3| unnamed protein product [Vitis vinifera]
Length = 474
Score = 809 bits (2089), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/438 (87%), Positives = 414/438 (94%), Gaps = 1/438 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MAA +ST+GAVN A PL +NGS + VPSS FLG SLKKVSSK++ R S +FKVV+E
Sbjct: 1 MAATISTLGAVNRA-PLNLNGSGTGASVPSSAFLGNSLKKVSSKIAHPRTSSGNFKVVAE 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DEEKQTS+D+W GLA+D SDDQQDITRGKGMVD+LFQAPM+SGTHYAVMSSYDYIS GL
Sbjct: 60 VDEEKQTSKDKWKGLAFDESDDQQDITRGKGMVDSLFQAPMDSGTHYAVMSSYDYISTGL 119
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
RQY+LDNT+DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120 RQYNLDNTMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 179
Query: 181 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 240
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGR+GG
Sbjct: 180 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGG 239
Query: 241 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 300
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 301 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360
MEKFYWAPTREDRIGVC+GIFR+DN+PKED+VKLVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 300 MEKFYWAPTREDRIGVCTGIFRSDNIPKEDMVKLVDTFPGQSIDFFGALRARVYDDEVRK 359
Query: 361 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 420
W++ VG+E IGK+LVNSKEGPPTFE+PKMTLDKLLEYG MLVQEQENVKRVQLADKYLSE
Sbjct: 360 WVASVGVEGIGKKLVNSKEGPPTFEKPKMTLDKLLEYGNMLVQEQENVKRVQLADKYLSE 419
Query: 421 AALGDANDDAIKNGSFYG 438
AALGDAN+DAIK+GSFYG
Sbjct: 420 AALGDANEDAIKSGSFYG 437
>gi|255584538|ref|XP_002532996.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
precursor, putative [Ricinus communis]
gi|223527225|gb|EEF29388.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
precursor, putative [Ricinus communis]
Length = 474
Score = 807 bits (2085), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/438 (86%), Positives = 410/438 (93%), Gaps = 1/438 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MAA VS++GAVN +PL +NG+ VPS+ F G SLKKV+SK+ Q+ILS + KV +E
Sbjct: 1 MAAAVSSIGAVNR-VPLNLNGADAGPSVPSTAFFGSSLKKVNSKIIHQKILSGNLKVSAE 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
YDE+KQT +DRW GLAYDISDDQQDITRGKGMVD+LFQAPM +GTHYAVMSSYDY+SQGL
Sbjct: 60 YDEQKQTDKDRWGGLAYDISDDQQDITRGKGMVDSLFQAPMGTGTHYAVMSSYDYLSQGL 119
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
RQY+LDN +DG YIAPAFMDKVVVHITKNFLNLPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120 RQYNLDNNMDGFYIAPAFMDKVVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCELVF 179
Query: 181 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 240
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGR+GG
Sbjct: 180 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGG 239
Query: 241 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 300
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 301 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360
MEKFYWAPTREDRIGVC+GIFRTDNVPKEDIVKLVDTFPGQSIDFFGA+RARVYDDEVR
Sbjct: 300 MEKFYWAPTREDRIGVCTGIFRTDNVPKEDIVKLVDTFPGQSIDFFGAIRARVYDDEVRA 359
Query: 361 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 420
WIS +G+E +GKRLVNSKE PPTFEQPKMTLDKLLEYG MLV+EQENVKRVQLADKYL E
Sbjct: 360 WISTIGVENVGKRLVNSKEAPPTFEQPKMTLDKLLEYGSMLVKEQENVKRVQLADKYLKE 419
Query: 421 AALGDANDDAIKNGSFYG 438
AALGDANDDAI+NGSFYG
Sbjct: 420 AALGDANDDAIQNGSFYG 437
>gi|290766481|gb|ADD60243.1| rubisco activase [Glycine max]
Length = 474
Score = 790 bits (2041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/440 (87%), Positives = 408/440 (92%), Gaps = 5/440 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS- 59
MAA V TVGAVN A LK+NGSS S V SS F G SLKKV+S+ S QR + ++FKV +
Sbjct: 1 MAASVPTVGAVNIA-QLKLNGSS--SRVTSSPFFGTSLKKVNSESSSQRGVCRNFKVSAQ 57
Query: 60 -EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
EYDEEKQTS+DRW GLAYD SDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYIS
Sbjct: 58 IEYDEEKQTSKDRWGGLAYDTSDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISA 117
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
GLRQY+LDNT+DG YIAPAFMDK+VVHITKNFLNLPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 118 GLRQYNLDNTMDGFYIAPAFMDKIVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCEL 177
Query: 179 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 238
VFAKMGINPI+MSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGR+
Sbjct: 178 VFAKMGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRL 237
Query: 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 298
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRD
Sbjct: 238 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 297
Query: 299 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 358
GRMEKFYWAPTR+DRIGVC GIFRTD V KEDI+KLVDTF GQSIDFFGALRARVYDDEV
Sbjct: 298 GRMEKFYWAPTRDDRIGVCQGIFRTDGVLKEDIIKLVDTFLGQSIDFFGALRARVYDDEV 357
Query: 359 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
RKWIS VG+E IGK+LVNSKEGPPTFEQPKMTL KLLEYG MLVQEQENVKRVQLADKYL
Sbjct: 358 RKWISGVGVENIGKKLVNSKEGPPTFEQPKMTLSKLLEYGNMLVQEQENVKRVQLADKYL 417
Query: 419 SEAALGDANDDAIKNGSFYG 438
+EAALGDANDDAIK G+FYG
Sbjct: 418 NEAALGDANDDAIKTGNFYG 437
>gi|356504250|ref|XP_003520910.1| PREDICTED: LOW QUALITY PROTEIN: ribulose bisphosphate
carboxylase/oxygenase activase 1, chloroplastic-like
[Glycine max]
Length = 474
Score = 788 bits (2036), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/440 (87%), Positives = 407/440 (92%), Gaps = 5/440 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS- 59
MAA V TVGAVN A LK+NGSS S V SS F G SLKKV+S+ S QR + ++FKV +
Sbjct: 1 MAASVPTVGAVNIA-QLKLNGSS--SRVTSSPFFGTSLKKVNSESSSQRGVCRNFKVSAQ 57
Query: 60 -EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
EYDEEKQTS+DRW GLAYD SDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYIS
Sbjct: 58 IEYDEEKQTSKDRWGGLAYDTSDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISA 117
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
GLRQY+LDNT+DG YIAPAFMDK+VVHITKNFLNLPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 118 GLRQYNLDNTMDGFYIAPAFMDKIVVHITKNFLNLPNIKVPLILGIWGGKGQGKSFQCEL 177
Query: 179 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 238
VFAKMGINPI+MSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGR+
Sbjct: 178 VFAKMGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRL 237
Query: 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 298
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRD
Sbjct: 238 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 297
Query: 299 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 358
GRMEKFYWAPTR+DRIGVC GIFRTD V KEDI+KLVDTF GQSIDFFGALR RVYDDEV
Sbjct: 298 GRMEKFYWAPTRDDRIGVCQGIFRTDGVLKEDIIKLVDTFLGQSIDFFGALRXRVYDDEV 357
Query: 359 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
RKWIS VG+E IGK+LVNSKEGPPTFEQPKMTL KLLEYG MLVQEQENVKRVQLADKYL
Sbjct: 358 RKWISGVGVENIGKKLVNSKEGPPTFEQPKMTLSKLLEYGNMLVQEQENVKRVQLADKYL 417
Query: 419 SEAALGDANDDAIKNGSFYG 438
+EAALGDANDDAIK G+FYG
Sbjct: 418 NEAALGDANDDAIKTGNFYG 437
>gi|68565781|sp|Q7X999.1|RCA2_LARTR RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
2, chloroplastic; Short=RA 2; Short=RuBisCO activase 2;
AltName: Full=RuBisCO activase beta form; Flags:
Precursor
gi|32481067|gb|AAP83930.1| Rubisco activase beta form precursor [Larrea tridentata]
Length = 435
Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/438 (85%), Positives = 407/438 (92%), Gaps = 5/438 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA STVGAVN A PL +NGS +R SLVPS+ F G SLKK ++K + S +FK+V+
Sbjct: 1 MAAAYSTVGAVNRA-PLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKAS--SGNFKIVA 57
Query: 60 -EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
E E++QT +D+W GLAYDISDDQQDITRGKGMVDTLFQAPM+SGTHYAVMSSYDYISQ
Sbjct: 58 QEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQ 117
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
GLRQY+LDN +DG YIAPAFMDK+VVHITKNFL+LPN+K+PLILGIWGGKGQGKSFQCEL
Sbjct: 118 GLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCEL 177
Query: 179 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 238
VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM
Sbjct: 178 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 237
Query: 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 298
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRD
Sbjct: 238 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 297
Query: 299 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 358
GRMEKFYWAPTREDRIGVC GIFRTDNVP+EDIVK+VD FPGQSIDFFGALRARVYDDEV
Sbjct: 298 GRMEKFYWAPTREDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEV 357
Query: 359 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
RKW+SEVG++ IGK+LVNSKEGPPTFEQPKMT+DKLL+YG MLV+EQENVKRVQLADKY+
Sbjct: 358 RKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYM 417
Query: 419 SEAALGDANDDAIKNGSF 436
SEAALGDAN DAIK G+F
Sbjct: 418 SEAALGDANQDAIKRGTF 435
>gi|357469233|ref|XP_003604901.1| Ribulose bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
gi|355505956|gb|AES87098.1| Ribulose bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
Length = 476
Score = 781 bits (2017), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/440 (84%), Positives = 406/440 (92%), Gaps = 3/440 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS- 59
MA V+ VGA+N A LK+NGSS + +S F G SLKK S +S Q+ LS +FKV +
Sbjct: 1 MATSVTIVGAINMA-QLKLNGSSSGVPMTNSAFFGTSLKKARSAISSQKSLSGNFKVSAK 59
Query: 60 -EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
+Y+EEKQTS+DRWAGLAYD SDDQQDITRGKG VD++FQAPM++GTHYAVMSSYDYIS
Sbjct: 60 IDYNEEKQTSKDRWAGLAYDTSDDQQDITRGKGKVDSVFQAPMDAGTHYAVMSSYDYIST 119
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
GLRQY++DNT+DGLYIAPAFMDK+VVHITKNFLNLPN+K+PLILGIWGGKGQGKSFQCEL
Sbjct: 120 GLRQYNMDNTVDGLYIAPAFMDKLVVHITKNFLNLPNIKIPLILGIWGGKGQGKSFQCEL 179
Query: 179 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 238
VFAKMGI+PIMMSAGELESGNAGEPAKLIRQRYREA+DII+KGKMCCLFINDLDAGAGRM
Sbjct: 180 VFAKMGISPIMMSAGELESGNAGEPAKLIRQRYREASDIIRKGKMCCLFINDLDAGAGRM 239
Query: 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 298
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAPLIRD
Sbjct: 240 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRD 299
Query: 299 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 358
GRMEKFYWAPTR+DR+GVC GIFRTD VPK+DIVK+VDTFPGQSIDFFGALRARVYDDEV
Sbjct: 300 GRMEKFYWAPTRDDRVGVCQGIFRTDGVPKDDIVKIVDTFPGQSIDFFGALRARVYDDEV 359
Query: 359 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
R WIS +G+E IGKRLVNSKEGPPTFEQPKMT+DKLLEYG MLVQEQENVKRVQLADKYL
Sbjct: 360 RNWISGIGVESIGKRLVNSKEGPPTFEQPKMTIDKLLEYGNMLVQEQENVKRVQLADKYL 419
Query: 419 SEAALGDANDDAIKNGSFYG 438
SEAALGDANDDAIK G+FYG
Sbjct: 420 SEAALGDANDDAIKTGNFYG 439
>gi|68565782|sp|Q7X9A0.1|RCA1_LARTR RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
1, chloroplastic; Short=RA 1; Short=RuBisCO activase 1;
AltName: Full=RuBisCO activase alpha form; Flags:
Precursor
gi|32481065|gb|AAP83929.1| Rubisco activase alpha form precursor [Larrea tridentata]
Length = 476
Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/440 (85%), Positives = 407/440 (92%), Gaps = 5/440 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA STVGAVN A PL +NGS +R SLVPS+ F G SLKK ++K + S +FK+V+
Sbjct: 1 MAAAYSTVGAVNRA-PLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKAS--SGNFKIVA 57
Query: 60 -EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
E E++QT +D+W GLAYDISDDQQDITRGKGMVDTLFQAPM+SGTHYAVMSSYDYISQ
Sbjct: 58 QEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQ 117
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
GLRQY+LDN +DG YIAPAFMDK+VVHITKNFL+LPN+K+PLILGIWGGKGQGKSFQCEL
Sbjct: 118 GLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCEL 177
Query: 179 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 238
VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM
Sbjct: 178 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 237
Query: 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 298
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRD
Sbjct: 238 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 297
Query: 299 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 358
GRMEKFYWAPTREDRIGVC GIFRTDNV +DIVKLVDTFPGQSIDFFGALRARVY DEV
Sbjct: 298 GRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEV 357
Query: 359 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
RKW+SEVG++ IGK+LVNSKEGPP+FEQPKMT+DKLL YG MLVQEQENVKRVQLADKY+
Sbjct: 358 RKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYM 417
Query: 419 SEAALGDANDDAIKNGSFYG 438
SEAALGDAN+DAIK G+FYG
Sbjct: 418 SEAALGDANNDAIKRGTFYG 437
>gi|359478916|ref|XP_003632187.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic isoform 2 [Vitis vinifera]
Length = 440
Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/438 (84%), Positives = 402/438 (91%), Gaps = 1/438 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MA VST+GAVN PL +N S + VPSS F G SLKKVSS+ + +I S SFKVV+E
Sbjct: 1 MATTVSTIGAVNRT-PLSLNSSGTGASVPSSAFFGSSLKKVSSRFTHPKIASGSFKVVAE 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DE +QT +DRW GLAYD+SDDQQDITRGKGMVD+LFQAPM+SGTHYAVMSSY+Y+S GL
Sbjct: 60 IDENEQTEKDRWKGLAYDVSDDQQDITRGKGMVDSLFQAPMQSGTHYAVMSSYEYLSTGL 119
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
RQY+LDN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120 RQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 179
Query: 181 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 240
+KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGR+GG
Sbjct: 180 SKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGG 239
Query: 241 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 300
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 301 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360
MEKFYWAP REDRIGVC GIFR+DNVP +DIVK+VDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 300 MEKFYWAPNREDRIGVCKGIFRSDNVPDDDIVKIVDTFPGQSIDFFGALRARVYDDEVRK 359
Query: 361 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 420
WIS VG++ IGK+LVNSKEGPPTFEQPKMT++KLLEYG MLV EQENVKRVQLADKYLSE
Sbjct: 360 WISGVGVDFIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVMEQENVKRVQLADKYLSE 419
Query: 421 AALGDANDDAIKNGSFYG 438
AALGDAN D+I+ G+FYG
Sbjct: 420 AALGDANVDSIERGTFYG 437
>gi|225434859|ref|XP_002282236.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic isoform 1 [Vitis vinifera]
gi|297746032|emb|CBI16088.3| unnamed protein product [Vitis vinifera]
Length = 472
Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/438 (84%), Positives = 402/438 (91%), Gaps = 1/438 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MA VST+GAVN PL +N S + VPSS F G SLKKVSS+ + +I S SFKVV+E
Sbjct: 1 MATTVSTIGAVNRT-PLSLNSSGTGASVPSSAFFGSSLKKVSSRFTHPKIASGSFKVVAE 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DE +QT +DRW GLAYD+SDDQQDITRGKGMVD+LFQAPM+SGTHYAVMSSY+Y+S GL
Sbjct: 60 IDENEQTEKDRWKGLAYDVSDDQQDITRGKGMVDSLFQAPMQSGTHYAVMSSYEYLSTGL 119
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
RQY+LDN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120 RQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 179
Query: 181 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 240
+KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGR+GG
Sbjct: 180 SKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGG 239
Query: 241 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 300
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 301 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360
MEKFYWAP REDRIGVC GIFR+DNVP +DIVK+VDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 300 MEKFYWAPNREDRIGVCKGIFRSDNVPDDDIVKIVDTFPGQSIDFFGALRARVYDDEVRK 359
Query: 361 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 420
WIS VG++ IGK+LVNSKEGPPTFEQPKMT++KLLEYG MLV EQENVKRVQLADKYLSE
Sbjct: 360 WISGVGVDFIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVMEQENVKRVQLADKYLSE 419
Query: 421 AALGDANDDAIKNGSFYG 438
AALGDAN D+I+ G+FYG
Sbjct: 420 AALGDANVDSIERGTFYG 437
>gi|147856329|emb|CAN83893.1| hypothetical protein VITISV_039112 [Vitis vinifera]
Length = 472
Score = 780 bits (2014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/438 (84%), Positives = 401/438 (91%), Gaps = 1/438 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MA VST+GAVN PL +N S VPSS F G SLKKVSS+ + +I S SFKVV+E
Sbjct: 1 MATTVSTIGAVNRT-PLSLNSSGTGXSVPSSAFFGSSLKKVSSRFTHPKIASGSFKVVAE 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DE +QT +DRW GLAYD+SDDQQDITRGKGMVD+LFQAPM+SGTHYAVMSSY+Y+S GL
Sbjct: 60 IDENEQTEKDRWKGLAYDVSDDQQDITRGKGMVDSLFQAPMQSGTHYAVMSSYEYLSTGL 119
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
RQY+LDN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120 RQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 179
Query: 181 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 240
+KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGR+GG
Sbjct: 180 SKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLGG 239
Query: 241 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 300
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 301 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360
MEKFYWAP REDRIGVC GIFR+DNVP +DIVK+VDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 300 MEKFYWAPNREDRIGVCKGIFRSDNVPDDDIVKIVDTFPGQSIDFFGALRARVYDDEVRK 359
Query: 361 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 420
WIS VG++ IGK+LVNSKEGPPTFEQPKMT++KLLEYG MLV EQENVKRVQLADKYLSE
Sbjct: 360 WISGVGVDFIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVMEQENVKRVQLADKYLSE 419
Query: 421 AALGDANDDAIKNGSFYG 438
AALGDAN D+I+ G+FYG
Sbjct: 420 AALGDANVDSIERGTFYG 437
>gi|255566442|ref|XP_002524206.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
precursor, putative [Ricinus communis]
gi|223536483|gb|EEF38130.1| Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast
precursor, putative [Ricinus communis]
Length = 473
Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/438 (84%), Positives = 402/438 (91%), Gaps = 2/438 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MAA +STVGAVN PL +NGS S VP+S F G SLKK++S + S SFKVVSE
Sbjct: 1 MAATISTVGAVNRT-PLALNGSGAGSSVPTSAFFGSSLKKLNSP-RFSKFSSGSFKVVSE 58
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
YDEEKQTS DRW GLAYD+SDDQQDITRGKGMVD+LFQAP ++GTHYAVMSSY+Y+S GL
Sbjct: 59 YDEEKQTSADRWGGLAYDMSDDQQDITRGKGMVDSLFQAPQDAGTHYAVMSSYEYLSTGL 118
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
RQY+LDN +DG YIAPAFMDK+VVHITKNF+ LPN+K+PLILGIWGGKGQGKSFQCELVF
Sbjct: 119 RQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKIPLILGIWGGKGQGKSFQCELVF 178
Query: 181 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 240
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMGG
Sbjct: 179 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMGG 238
Query: 241 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 300
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 298
Query: 301 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360
MEKFYWAPTREDRIGVC+GIF+TD V ED+VKLVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 299 MEKFYWAPTREDRIGVCTGIFKTDGVAPEDVVKLVDTFPGQSIDFFGALRARVYDDEVRK 358
Query: 361 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 420
WI VG+E+IGK LVNSKEGPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLADKY+SE
Sbjct: 359 WIGGVGVEKIGKSLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYMSE 418
Query: 421 AALGDANDDAIKNGSFYG 438
AALG+AN D+I+ G+FYG
Sbjct: 419 AALGEANQDSIERGTFYG 436
>gi|225449432|ref|XP_002282979.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic [Vitis vinifera]
Length = 438
Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/438 (83%), Positives = 406/438 (92%), Gaps = 2/438 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRF-SLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MA VSTVGAVN AL L +NG+S + VPSS FLG SLKKV+S+ + ++ S SFKVV+
Sbjct: 1 MATAVSTVGAVNRAL-LSLNGASGAGASVPSSAFLGSSLKKVNSRFTHSKVSSGSFKVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E D++ QT +D+W GLA+D SDDQQDI RGKGMVD+LFQAPM++GTHYAVMSSY+YIS G
Sbjct: 60 EVDDDMQTEKDKWKGLAFDTSDDQQDIVRGKGMVDSLFQAPMDAGTHYAVMSSYEYISTG 119
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LRQY+LDN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 120 LRQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELV 179
Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239
F+KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGR+G
Sbjct: 180 FSKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLG 239
Query: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 299
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVP+IVTGNDFSTLYAPLIRDG
Sbjct: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPVIVTGNDFSTLYAPLIRDG 299
Query: 300 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 359
RMEKFYWAPTREDRIGVC+GIFRTDNVP EDIVKLVDTFPGQSIDFFGALRARVYDD VR
Sbjct: 300 RMEKFYWAPTREDRIGVCTGIFRTDNVPVEDIVKLVDTFPGQSIDFFGALRARVYDDMVR 359
Query: 360 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 419
WI+ +G++ +GKRLVNSKEGPP+FEQPKMTL+KLLEYG MLVQEQENVKRVQLADKYL+
Sbjct: 360 DWIAGIGVDTVGKRLVNSKEGPPSFEQPKMTLEKLLEYGSMLVQEQENVKRVQLADKYLN 419
Query: 420 EAALGDANDDAIKNGSFY 437
EAALGDAN+DAIK+GSF+
Sbjct: 420 EAALGDANEDAIKSGSFF 437
>gi|12620881|gb|AAG61120.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1
[Gossypium hirsutum]
Length = 438
Score = 772 bits (1993), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 369/439 (84%), Positives = 399/439 (90%), Gaps = 4/439 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQ-RILSKSFKVVS 59
MAA VST+GAVN A PL +NGS + PSS F+G SLKKVS++ + + SFK+V+
Sbjct: 1 MAAAVSTIGAVNRA-PLSLNGSGAGASAPSSAFMGNSLKKVSARFNNNGKAPVGSFKIVA 59
Query: 60 --EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYIS 117
E DE+ QT QDRW GLAYDISDDQQDITRGKGMVD+LFQAPM GTHYAVMSSY+YIS
Sbjct: 60 AKEIDEDTQTDQDRWKGLAYDISDDQQDITRGKGMVDSLFQAPMNDGTHYAVMSSYEYIS 119
Query: 118 QGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 177
QGLR Y LDN +DG YIAPAFMDK+VVHITKN++ LPN+KVPLILGIWGGKGQGKSFQCE
Sbjct: 120 QGLRTYDLDNNMDGFYIAPAFMDKLVVHITKNYMTLPNIKVPLILGIWGGKGQGKSFQCE 179
Query: 178 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 237
LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR
Sbjct: 180 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 239
Query: 238 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 297
MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIR
Sbjct: 240 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIR 299
Query: 298 DGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDE 357
DGRMEKFYWAPTREDRIGVC+GIFRTDNVP +DIVKLVDTFPGQSIDFFGALRARVYDDE
Sbjct: 300 DGRMEKFYWAPTREDRIGVCTGIFRTDNVPVDDIVKLVDTFPGQSIDFFGALRARVYDDE 359
Query: 358 VRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
VRKWI EVG+ +GK+LVNS+EGPP+FEQP MT++KLLEYG MLV EQENVKRVQLADKY
Sbjct: 360 VRKWIGEVGVNSVGKKLVNSREGPPSFEQPTMTIEKLLEYGNMLVAEQENVKRVQLADKY 419
Query: 418 LSEAALGDANDDAIKNGSF 436
LSEAALG+ANDDAIK G+F
Sbjct: 420 LSEAALGNANDDAIKRGAF 438
>gi|115334975|gb|ABI94075.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase small protein isoform [Acer rubrum]
Length = 437
Score = 770 bits (1988), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/439 (83%), Positives = 401/439 (91%), Gaps = 3/439 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N+A PL +NGS + S VP+S F G SLKKV+S+ ++ S SFKVV+
Sbjct: 1 MAAAVSTVGAINSA-PLSLNGSGAAGSTVPTSAFFGTSLKKVASRFPNPKVHSGSFKVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E DE KQT +D+W GLAYD SDDQQDITRGKG+VD+LFQAP +GTHYAVMSSYDYIS G
Sbjct: 60 EIDENKQTEKDKWRGLAYDTSDDQQDITRGKGLVDSLFQAPSGTGTHYAVMSSYDYISTG 119
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LR Y L+N++DG YIAPAFMDK+VVHITKNF++LPN+K+PLILGIWGGKGQGKSFQCELV
Sbjct: 120 LRTY-LENSMDGFYIAPAFMDKLVVHITKNFMSLPNIKIPLILGIWGGKGQGKSFQCELV 178
Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239
FAKMGI PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 FAKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 238
Query: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 299
GTTQYTVNNQMVNATLMNIADNPT+VQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 298
Query: 300 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 359
RMEKFYWAPTREDRIGVC GIFR+DNV +++KLVDTFPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRSDNVADGELIKLVDTFPGQSIDFFGALRARVYDDEVR 358
Query: 360 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 419
KWIS +G++ IGK LVNSK GPPTFEQPKMT+DKLLEYG MLVQEQENVKRVQLADKYLS
Sbjct: 359 KWISGIGVDSIGKNLVNSKNGPPTFEQPKMTIDKLLEYGNMLVQEQENVKRVQLADKYLS 418
Query: 420 EAALGDANDDAIKNGSFYG 438
EAALGDANDDAIK GSFYG
Sbjct: 419 EAALGDANDDAIKRGSFYG 437
>gi|115334977|gb|ABI94076.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase large protein isoform [Acer rubrum]
Length = 474
Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/439 (83%), Positives = 401/439 (91%), Gaps = 3/439 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N+A PL +NGS + S VP+S F G SLKKV+S+ ++ S SFKVV+
Sbjct: 1 MAAAVSTVGAINSA-PLSLNGSGAAGSTVPTSAFFGTSLKKVASRFPNPKVHSGSFKVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E DE KQT +D+W GLAYD SDDQQDITRGKG+VD+LFQAP +GTHYAVMSSYDYIS G
Sbjct: 60 EIDENKQTEKDKWRGLAYDTSDDQQDITRGKGLVDSLFQAPSGTGTHYAVMSSYDYISTG 119
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LR Y L+N++DG YIAPAFMDK+VVHITKNF++LPN+K+PLILGIWGGKGQGKSFQCELV
Sbjct: 120 LRTY-LENSMDGFYIAPAFMDKLVVHITKNFMSLPNIKIPLILGIWGGKGQGKSFQCELV 178
Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239
FAKMGI PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 FAKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 238
Query: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 299
GTTQYTVNNQMVNATLMNIADNPT+VQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 298
Query: 300 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 359
RMEKFYWAPTREDRIGVC GIFR+DNV +++KLVDTFPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRSDNVADGELIKLVDTFPGQSIDFFGALRARVYDDEVR 358
Query: 360 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 419
KWIS +G++ IGK LVNSK GPPTFEQPKMT+DKLLEYG MLVQEQENVKRVQLADKYLS
Sbjct: 359 KWISGIGVDSIGKNLVNSKNGPPTFEQPKMTIDKLLEYGNMLVQEQENVKRVQLADKYLS 418
Query: 420 EAALGDANDDAIKNGSFYG 438
EAALGDANDDAIK GSFYG
Sbjct: 419 EAALGDANDDAIKRGSFYG 437
>gi|363806750|ref|NP_001242531.1| ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Glycine max]
gi|290766483|gb|ADD60244.1| rubisco activase [Glycine max]
Length = 478
Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/442 (82%), Positives = 402/442 (90%), Gaps = 5/442 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVS-SKVSQQRILSKSFKVVS 59
MAA VST+GAVN A PL +N S VPSS F G SLKKV+ S+V +I S SFK+V+
Sbjct: 1 MAASVSTIGAVNRA-PLSLNSSEAGDSVPSSAFFGTSLKKVTASRVPNVKISSGSFKIVA 59
Query: 60 ---EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E DE++QT++DRW GLAYDISDDQQDITRGKGMVD+LFQAP E+GTHYAVMSS++Y+
Sbjct: 60 AEKEIDEQQQTNKDRWKGLAYDISDDQQDITRGKGMVDSLFQAPQETGTHYAVMSSFEYL 119
Query: 117 SQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 176
S GL+QY+LDN +DG YIAPAFMDK+V HITKNF+ LPN+KVPLILGIWGGKGQGKSFQC
Sbjct: 120 STGLKQYNLDNNMDGFYIAPAFMDKLVAHITKNFMTLPNIKVPLILGIWGGKGQGKSFQC 179
Query: 177 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236
ELVFAKMGINPIMM AGELESGNAGEPAKLIRQRYREAADII KGKMCCLFINDLD GAG
Sbjct: 180 ELVFAKMGINPIMMGAGELESGNAGEPAKLIRQRYREAADIISKGKMCCLFINDLDVGAG 239
Query: 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 296
R+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++ENPRVPIIVTGNDFSTLYAPLI
Sbjct: 240 RLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENPRVPIIVTGNDFSTLYAPLI 299
Query: 297 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 356
RDGRMEKFYWAPTR+DR+GVC GIFRTDNVP+++IVKLVDTFPGQSIDFFGALRARVYDD
Sbjct: 300 RDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPEDEIVKLVDTFPGQSIDFFGALRARVYDD 359
Query: 357 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 416
EVRKWIS VG++ IGK+LVNSKEGPPTF+QPKMTL KLLEYG MLVQEQENVKRVQLADK
Sbjct: 360 EVRKWISGVGVDLIGKKLVNSKEGPPTFDQPKMTLSKLLEYGNMLVQEQENVKRVQLADK 419
Query: 417 YLSEAALGDANDDAIKNGSFYG 438
YL+EAALGDAN DAIK G+FYG
Sbjct: 420 YLNEAALGDANQDAIKRGTFYG 441
>gi|358248528|ref|NP_001240152.1| ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Glycine max]
gi|290766479|gb|ADD60242.1| alpha-form rubisco activase [Glycine max]
gi|290766489|gb|ADD60247.1| alpha-form rubisco activase [Glycine max]
Length = 478
Score = 766 bits (1977), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/442 (82%), Positives = 404/442 (91%), Gaps = 5/442 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKV-SSKVSQQRILSKSFKVVS 59
MAA VSTVGAVN A PL +N S + VPSS F G SLKKV +S+V +I S SFK+V+
Sbjct: 1 MAASVSTVGAVNGA-PLSLNSSGAGASVPSSAFFGTSLKKVIASRVPNVKISSGSFKIVA 59
Query: 60 ---EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E DE++QT +DRW GLAYD+SDDQQDITRGKG+VD+LFQAP ++GTHYA+MSSY+Y+
Sbjct: 60 AEKEIDEKQQTDKDRWKGLAYDVSDDQQDITRGKGLVDSLFQAPQDTGTHYAIMSSYEYL 119
Query: 117 SQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 176
S GL+QY+LDN +DG YIAPAFMDK+VVHI+KNF+ LPN+KVPLILGIWGGKGQGKSFQC
Sbjct: 120 STGLKQYNLDNNMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQC 179
Query: 177 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236
ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMC LFINDLDAGAG
Sbjct: 180 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCALFINDLDAGAG 239
Query: 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 296
R+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLI
Sbjct: 240 RLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLI 299
Query: 297 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 356
RDGRMEKFYWAPTR+DR+GVC+GIFRTDNVPK+DIVKLVDTFPGQSIDFFGALRARVYDD
Sbjct: 300 RDGRMEKFYWAPTRDDRVGVCNGIFRTDNVPKDDIVKLVDTFPGQSIDFFGALRARVYDD 359
Query: 357 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 416
EVRKWIS VG++ IGK+LVNSKEGPPTF+QPKMTL KLLEYG MLVQEQENVKRVQLADK
Sbjct: 360 EVRKWISVVGVDFIGKKLVNSKEGPPTFDQPKMTLSKLLEYGNMLVQEQENVKRVQLADK 419
Query: 417 YLSEAALGDANDDAIKNGSFYG 438
YL EAALGDAN D+I G+FYG
Sbjct: 420 YLKEAALGDANQDSINRGTFYG 441
>gi|115334979|gb|ABI94077.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase small protein isoform [Acer rubrum]
Length = 437
Score = 765 bits (1975), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/439 (83%), Positives = 398/439 (90%), Gaps = 3/439 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVG VN+A PL +NGS + S VP+S F G SLKKV+S+ ++ S SFKVV+
Sbjct: 1 MAAAVSTVGTVNSA-PLSLNGSGAAGSTVPTSAFFGTSLKKVASRFPNPKVHSGSFKVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E DE KQT +D+W GLAYD SDDQQDITRGKG+VD+LFQAP +GTHYAVMSSYDYIS G
Sbjct: 60 EIDENKQTEKDKWRGLAYDTSDDQQDITRGKGLVDSLFQAPSGTGTHYAVMSSYDYISTG 119
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LR Y L+N++DG YIAP FM K+VVHITKNF++LPN+K+PLILGIWGGKGQGKSFQCELV
Sbjct: 120 LRTY-LENSMDGFYIAPVFMGKLVVHITKNFMSLPNIKIPLILGIWGGKGQGKSFQCELV 178
Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239
FAKMGI PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 FAKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 238
Query: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 299
GTTQYTVNNQMVNATLMNIADNPT+VQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 298
Query: 300 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 359
RMEKFYWAPTREDRIGVC GIFR+DNV +++KLVDTFPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRSDNVADNELIKLVDTFPGQSIDFFGALRARVYDDEVR 358
Query: 360 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 419
KWIS +G++ IGK LVNSK GPPTFEQPKMT+DKLLEYG MLVQEQENVKRVQLADKYLS
Sbjct: 359 KWISGIGVDSIGKNLVNSKNGPPTFEQPKMTIDKLLEYGNMLVQEQENVKRVQLADKYLS 418
Query: 420 EAALGDANDDAIKNGSFYG 438
EAALGDANDDAIK GSFYG
Sbjct: 419 EAALGDANDDAIKRGSFYG 437
>gi|115334981|gb|ABI94078.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase large protein isoform [Acer rubrum]
Length = 474
Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/439 (83%), Positives = 398/439 (90%), Gaps = 3/439 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVG VN+A PL +NGS + S VP+S F G SLKKV+S+ ++ S SFKVV+
Sbjct: 1 MAAAVSTVGTVNSA-PLSLNGSGAAGSTVPTSAFFGTSLKKVASRFPNPKVHSGSFKVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E DE KQT +D+W GLAYD SDDQQDITRGKG+VD+LFQAP +GTHYAVMSSYDYIS G
Sbjct: 60 EIDENKQTEKDKWRGLAYDTSDDQQDITRGKGLVDSLFQAPSGTGTHYAVMSSYDYISTG 119
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LR Y L+N++DG YIAP FM K+VVHITKNF++LPN+K+PLILGIWGGKGQGKSFQCELV
Sbjct: 120 LRTY-LENSMDGFYIAPVFMGKLVVHITKNFMSLPNIKIPLILGIWGGKGQGKSFQCELV 178
Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239
FAKMGI PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 FAKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 238
Query: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 299
GTTQYTVNNQMVNATLMNIADNPT+VQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 298
Query: 300 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 359
RMEKFYWAPTREDRIGVC GIFR+DNV +++KLVDTFPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRSDNVADNELIKLVDTFPGQSIDFFGALRARVYDDEVR 358
Query: 360 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 419
KWIS +G++ IGK LVNSK GPPTFEQPKMT+DKLLEYG MLVQEQENVKRVQLADKYLS
Sbjct: 359 KWISGIGVDSIGKNLVNSKNGPPTFEQPKMTIDKLLEYGNMLVQEQENVKRVQLADKYLS 418
Query: 420 EAALGDANDDAIKNGSFYG 438
EAALGDANDDAIK GSFYG
Sbjct: 419 EAALGDANDDAIKRGSFYG 437
>gi|357492323|ref|XP_003616450.1| Ribulose-1 5-bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
gi|355517785|gb|AES99408.1| Ribulose-1 5-bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
Length = 476
Score = 764 bits (1972), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/439 (83%), Positives = 397/439 (90%), Gaps = 2/439 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS- 59
M A VS V AV+ PL +N S + VPSS F G SLKKV+S++ ++ S FK+V+
Sbjct: 1 MVASVSAVRAVSGT-PLSLNSSGAVASVPSSSFFGTSLKKVTSRLPNTKVSSGRFKIVAA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E +E KQT +DRW GLAYD SDDQQDITRGKGMVDT+FQAP +SGTHYAVMSSY+YIS G
Sbjct: 60 EINESKQTDKDRWRGLAYDTSDDQQDITRGKGMVDTVFQAPQDSGTHYAVMSSYEYISTG 119
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LRQY+LDNT+DG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQ ELV
Sbjct: 120 LRQYNLDNTMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQAELV 179
Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239
FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA+DII+KGKMCCLFINDLDAGAGRMG
Sbjct: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDIIRKGKMCCLFINDLDAGAGRMG 239
Query: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 299
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAPLIRDG
Sbjct: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDG 299
Query: 300 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 359
RMEKFYWAPTREDRIGVC GIFR DNVP+ED+VK+VDTFPGQSIDFFGALRARVYDDEVR
Sbjct: 300 RMEKFYWAPTREDRIGVCKGIFRHDNVPEEDVVKIVDTFPGQSIDFFGALRARVYDDEVR 359
Query: 360 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 419
KWI+ VGIE IGK+LVNSKEGPPTF+QPKM+L+KLLEYG MLVQEQENVKRVQLADKYL
Sbjct: 360 KWIAGVGIETIGKKLVNSKEGPPTFDQPKMSLEKLLEYGNMLVQEQENVKRVQLADKYLE 419
Query: 420 EAALGDANDDAIKNGSFYG 438
AALGDAN DAIK+GSFYG
Sbjct: 420 GAALGDANQDAIKSGSFYG 438
>gi|118487547|gb|ABK95600.1| unknown [Populus trichocarpa]
Length = 476
Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/440 (81%), Positives = 402/440 (91%), Gaps = 3/440 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSS-KVSQQRILSKSFKVVS 59
MAA +STVGAVN A PL +NGS S VP+S F G SLKKVSS + + +I SFKVV+
Sbjct: 1 MAATISTVGAVNTA-PLALNGSGAGSTVPNSAFFGNSLKKVSSSRFTNSKISPGSFKVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
EYDE+KQT +DRW GL D+SDDQQDI+RGKGMVD+LFQAP +GTH V++SY+Y+SQG
Sbjct: 60 EYDEKKQTDKDRWGGLVTDMSDDQQDISRGKGMVDSLFQAPQGTGTHNPVLNSYEYLSQG 119
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LR Y+LDN +DG YIAPAFMDK+VVHI+KNF++LPN+KVPLILG+WGGKGQGKSFQCELV
Sbjct: 120 LRTYNLDNNMDGFYIAPAFMDKLVVHISKNFMSLPNIKVPLILGVWGGKGQGKSFQCELV 179
Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGRM 238
FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK GKMCCLFINDLDAGAGR+
Sbjct: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGRL 239
Query: 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 298
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRD
Sbjct: 240 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 299
Query: 299 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 358
GRMEKFYWAPTR+DRIGVC GIF++D +PKEDIVKLVDTFPGQSIDFFGALRARVYDDEV
Sbjct: 300 GRMEKFYWAPTRDDRIGVCIGIFKSDKIPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 359
Query: 359 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
RKW+S VG++ IGK+LVNS+EGPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLADKYL
Sbjct: 360 RKWVSGVGVDSIGKKLVNSREGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYL 419
Query: 419 SEAALGDANDDAIKNGSFYG 438
SEA+LG+AN D+I G+FYG
Sbjct: 420 SEASLGEANQDSIDRGTFYG 439
>gi|118486739|gb|ABK95205.1| unknown [Populus trichocarpa]
Length = 475
Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 364/441 (82%), Positives = 403/441 (91%), Gaps = 4/441 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSS-KVSQQRILSKSFKVVS 59
MAA +STVGAVN A PL +NGS S VP+S F G SLKKVSS + + +I S SFKVV+
Sbjct: 1 MAATISTVGAVNRA-PLALNGSGAGSTVPTSAFFGNSLKKVSSSRFTNSKISSGSFKVVA 59
Query: 60 E-YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
E YDEEKQT +DRW GL D+SDDQQDITRGKGMVD+LFQAP +GTH V+SSY+Y+SQ
Sbjct: 60 EEYDEEKQTEKDRWGGLVTDMSDDQQDITRGKGMVDSLFQAPQGTGTHNPVLSSYEYLSQ 119
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
GLR Y+LDN +DG YIAPAFMDK+VVHI+KNF++LPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 120 GLRTYNLDNMMDGFYIAPAFMDKIVVHISKNFMSLPNIKVPLILGIWGGKGQGKSFQCEL 179
Query: 179 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGR 237
VFAKMGI+PIMMSAGELESGNAGEPAKLIRQRYREAADIIKK GKMCCLFINDLDAGAGR
Sbjct: 180 VFAKMGISPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGR 239
Query: 238 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 297
+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+NPRVPIIVTGNDFSTLYAPLIR
Sbjct: 240 LGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIR 299
Query: 298 DGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDE 357
DGRMEKFYWAPTREDRIGVC GIF+TDNVP++DIVKLVDTFPGQSIDFFGALRARVYDDE
Sbjct: 300 DGRMEKFYWAPTREDRIGVCIGIFKTDNVPEDDIVKLVDTFPGQSIDFFGALRARVYDDE 359
Query: 358 VRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
VRKW+S VG+E IGK+LVNS+EGPPTFEQP MT++KL EYG MLV+EQENVKRVQLADKY
Sbjct: 360 VRKWVSGVGVESIGKKLVNSREGPPTFEQPPMTVEKLFEYGNMLVKEQENVKRVQLADKY 419
Query: 418 LSEAALGDANDDAIKNGSFYG 438
LS+AALG+AN DAI+ G+FYG
Sbjct: 420 LSDAALGEANQDAIERGTFYG 440
>gi|118489105|gb|ABK96359.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 476
Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/440 (82%), Positives = 402/440 (91%), Gaps = 3/440 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSS-KVSQQRILSKSFKVVS 59
MAA +STVGAVN A PL +NGS S VP+S F G SLKKVSS + + +I S SFKVV+
Sbjct: 1 MAATISTVGAVNTA-PLALNGSGAGSTVPNSAFFGNSLKKVSSSRFTNSKISSGSFKVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
EYDE+KQT +DRW GL D+SDDQQDITRGKGMVD+LFQAP +GTH ++SSY+Y+SQG
Sbjct: 60 EYDEKKQTDKDRWGGLVTDMSDDQQDITRGKGMVDSLFQAPQGTGTHNPILSSYEYLSQG 119
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LR Y+LDN +DG YIAPAFMDK+VVHI+KNF++LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 120 LRTYNLDNNMDGYYIAPAFMDKLVVHISKNFMSLPNIKVPLILGIWGGKGQGKSFQCELV 179
Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGRM 238
FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK GKMCCLFINDLDAGAGR+
Sbjct: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGRL 239
Query: 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 298
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+NPRVPIIVTGNDFSTLYAPLIRD
Sbjct: 240 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRD 299
Query: 299 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 358
GRMEKFYWAPTR+DRIGVC GIF++D + KEDIVKLVDTFPGQSIDFFGALRARVYDDEV
Sbjct: 300 GRMEKFYWAPTRDDRIGVCIGIFKSDKIAKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 359
Query: 359 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
RKWIS VG++ IGK+LVNS++GPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLADKYL
Sbjct: 360 RKWISGVGVDSIGKKLVNSRDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYL 419
Query: 419 SEAALGDANDDAIKNGSFYG 438
SEA+LG+AN D+I G+FYG
Sbjct: 420 SEASLGEANQDSIDRGTFYG 439
>gi|224101023|ref|XP_002312110.1| predicted protein [Populus trichocarpa]
gi|222851930|gb|EEE89477.1| predicted protein [Populus trichocarpa]
Length = 438
Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/439 (82%), Positives = 401/439 (91%), Gaps = 4/439 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSS-KVSQQRILSKSFKVVS 59
MAA +STVGAVN A PL +NGS S VP+S F G SLKKVSS + + +I S SFKVV+
Sbjct: 1 MAATISTVGAVNRA-PLALNGSGAGSTVPTSAFFGNSLKKVSSSRFTNSKISSGSFKVVA 59
Query: 60 E-YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
E YDEEKQT +DRW GL D+SDDQQDITRGKGMVD+LFQAP +GTH V+SSY+Y+SQ
Sbjct: 60 EEYDEEKQTEKDRWGGLVTDMSDDQQDITRGKGMVDSLFQAPQGTGTHNPVLSSYEYLSQ 119
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
GLR Y+LDN +DG YIAPAFMDK+VVHI+KNF++LPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 120 GLRTYNLDNMMDGFYIAPAFMDKIVVHISKNFMSLPNIKVPLILGIWGGKGQGKSFQCEL 179
Query: 179 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGR 237
VFAKMGI+PIMMSAGELESGNAGEPAKLIRQRYREAADIIKK GKMCCLFINDLDAGAGR
Sbjct: 180 VFAKMGISPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGR 239
Query: 238 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 297
+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+NPRVP+IVTGNDFSTLYAPLIR
Sbjct: 240 LGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPVIVTGNDFSTLYAPLIR 299
Query: 298 DGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDE 357
DGRMEKFYWAPTREDRIGVC GIF+TDNVP++DIVKLVDTFPGQSIDFFGALRARVYDDE
Sbjct: 300 DGRMEKFYWAPTREDRIGVCIGIFKTDNVPEDDIVKLVDTFPGQSIDFFGALRARVYDDE 359
Query: 358 VRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
VRKW+S VG+E IGK+LVNS+EGPPTFEQP MT++KL EYG MLV+EQENVKRVQLADKY
Sbjct: 360 VRKWVSGVGVESIGKKLVNSREGPPTFEQPPMTVEKLFEYGNMLVKEQENVKRVQLADKY 419
Query: 418 LSEAALGDANDDAIKNGSF 436
LS+AALG+AN DAI+ G+F
Sbjct: 420 LSDAALGEANQDAIERGTF 438
>gi|255635315|gb|ACU18011.1| unknown [Glycine max]
gi|290766487|gb|ADD60246.1| beta-form rubisco activase [Glycine max]
gi|290766491|gb|ADD60248.1| beta-form rubisco activase [Glycine max]
Length = 443
Score = 754 bits (1946), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/443 (81%), Positives = 402/443 (90%), Gaps = 8/443 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKV-SSKVSQQRILSKSFKVVS 59
MAA VSTVGAVN AL L +NGS + PSS F G SLKKV +S+V ++ SFK+V+
Sbjct: 1 MAASVSTVGAVNRAL-LNLNGSGAGASAPSSAFFGTSLKKVIASRVPNSKVSGGSFKIVA 59
Query: 60 -----EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYD 114
E +E +QT +DRW GLAYDISDDQQDITRGKG+VD+LFQAP ++GTHYAVMSSY+
Sbjct: 60 VEEKKEIEETQQTDKDRWKGLAYDISDDQQDITRGKGLVDSLFQAPQDAGTHYAVMSSYE 119
Query: 115 YISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSF 174
Y+S GLRQY LDN +DG YIAPAFMDK+VVHI+KNF+ LPN+KVPLILGIWGGKGQGKSF
Sbjct: 120 YLSTGLRQY-LDNKMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSF 178
Query: 175 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234
QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMC LFINDLDAG
Sbjct: 179 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCALFINDLDAG 238
Query: 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 294
AGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAP
Sbjct: 239 AGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 298
Query: 295 LIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVY 354
LIRDGRMEKFYWAPTREDRIGVC+GIFRTD +P++DIVKLVDTFPGQSIDFFGALRARVY
Sbjct: 299 LIRDGRMEKFYWAPTREDRIGVCTGIFRTDGIPEQDIVKLVDTFPGQSIDFFGALRARVY 358
Query: 355 DDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLA 414
DDEVRKWIS VG++ +GK+LVNSK+GPPTFEQPKMTL+KLL YG MLVQEQENVKRVQLA
Sbjct: 359 DDEVRKWISGVGVDSVGKKLVNSKDGPPTFEQPKMTLEKLLLYGNMLVQEQENVKRVQLA 418
Query: 415 DKYLSEAALGDANDDAIKNGSFY 437
DKYL+EAALG+AN+DAI+ G+F+
Sbjct: 419 DKYLNEAALGNANEDAIQRGTFF 441
>gi|358249078|ref|NP_001240245.1| ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Glycine max]
gi|290766485|gb|ADD60245.1| rubisco activase [Glycine max]
Length = 443
Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/443 (81%), Positives = 401/443 (90%), Gaps = 8/443 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKV-SSKVSQQRILSKSFKVVS 59
MAA VSTVGAVN AL L +NGS PSS F G SLKKV S+V +I S SFK+V+
Sbjct: 1 MAASVSTVGAVNRAL-LNLNGSGPGVSAPSSSFFGSSLKKVIGSRVPNTKISSGSFKIVA 59
Query: 60 -----EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYD 114
E +E +QT +DRW GLAYDISDDQQDITRGKG+VD+LFQAP ++GTHYAVMSSY+
Sbjct: 60 VEEKKEIEETQQTDKDRWKGLAYDISDDQQDITRGKGLVDSLFQAPQDAGTHYAVMSSYE 119
Query: 115 YISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSF 174
Y+S GLRQY LDN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSF
Sbjct: 120 YLSTGLRQY-LDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSF 178
Query: 175 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234
QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMC LFINDLDAG
Sbjct: 179 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCALFINDLDAG 238
Query: 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 294
AGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAP
Sbjct: 239 AGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 298
Query: 295 LIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVY 354
LIRDGRMEKFYWAPTR+DRIGVC+GIFRTD++P++D+VK+VDTFPGQSIDFFGALRARVY
Sbjct: 299 LIRDGRMEKFYWAPTRDDRIGVCTGIFRTDSIPEQDVVKIVDTFPGQSIDFFGALRARVY 358
Query: 355 DDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLA 414
DDEVRKWIS VG++ IGK+LVNSK+GPPTFEQPKMTL+KLL YG MLVQEQENVKRVQLA
Sbjct: 359 DDEVRKWISGVGVDGIGKKLVNSKDGPPTFEQPKMTLEKLLTYGNMLVQEQENVKRVQLA 418
Query: 415 DKYLSEAALGDANDDAIKNGSFY 437
DKYL+EAALG+AN+DAI G+F+
Sbjct: 419 DKYLNEAALGNANEDAINRGTFF 441
>gi|3914605|sp|Q40281.1|RCA_MALDO RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|415852|emb|CAA79857.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase [Malus x
domestica]
Length = 437
Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/438 (82%), Positives = 398/438 (90%), Gaps = 1/438 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MA VST+G+VN A P +NGSS + VPSS FLG SLKKV+S+ + ++ S S ++V+
Sbjct: 1 MATAVSTIGSVNRAPP-NLNGSSSSASVPSSTFLGSSLKKVNSRFTNSKVSSGSLRIVAS 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DE+KQT +DRW GLA+D SDDQQDITRGKG VD+LFQAP SGTH+A+MSSY+YIS GL
Sbjct: 60 VDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGL 119
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
RQY+ DN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120 RQYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLILGIWGGKGQGKSFQCELVF 179
Query: 181 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 240
AKM I+PIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMC LFINDLDAGAGR+GG
Sbjct: 180 AKMRISPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCALFINDLDAGAGRLGG 239
Query: 241 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 300
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 301 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360
MEKFYWAPTREDRIGVC GIFR+DNV KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 300 MEKFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 359
Query: 361 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 420
WI+ VG++ IGK+LVNSKEGPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLADKYLSE
Sbjct: 360 WITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSE 419
Query: 421 AALGDANDDAIKNGSFYG 438
AALGDAN DA+ G+FYG
Sbjct: 420 AALGDANSDAMNTGTFYG 437
>gi|13430338|gb|AAK25801.1|AF338240_1 rubisco activase [Zantedeschia aethiopica]
Length = 435
Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/435 (81%), Positives = 392/435 (90%), Gaps = 2/435 (0%)
Query: 5 VSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS-EYDE 63
VS+VGAVN P ++GS + V S FLG SLK V+ + R + + KV++ + DE
Sbjct: 2 VSSVGAVNRVRP-SLHGSGSGASVTRSGFLGTSLKTVNPSLGHGRTSTGTLKVMAADLDE 60
Query: 64 EKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQY 123
KQT DRWAGL D SDDQQDITRGKGMVD+LFQAPM GTH V+SSY+YIS GLR +
Sbjct: 61 SKQTKTDRWAGLYTDTSDDQQDITRGKGMVDSLFQAPMGDGTHNPVLSSYEYISTGLRSF 120
Query: 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM 183
+LDNT++GLYIAPAFMDK+VVHITKNF+NLPN+K+PLILGIWGGKGQGKSFQCELVFAKM
Sbjct: 121 NLDNTVNGLYIAPAFMDKLVVHITKNFMNLPNIKIPLILGIWGGKGQGKSFQCELVFAKM 180
Query: 184 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQ 243
GINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGRMGGTTQ
Sbjct: 181 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGGTTQ 240
Query: 244 YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 303
YTVNNQMVNATLMNIADNPTNVQLPGMYN++ENPRVPIIVTGNDFSTLYAPLIRDGRMEK
Sbjct: 241 YTVNNQMVNATLMNIADNPTNVQLPGMYNKQENPRVPIIVTGNDFSTLYAPLIRDGRMEK 300
Query: 304 FYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 363
FYWAPTR+DR+GVC+GIFR+DNVPKED++KLVDTFPGQSIDFFGALRARVYDDEVRKWI+
Sbjct: 301 FYWAPTRDDRVGVCTGIFRSDNVPKEDVIKLVDTFPGQSIDFFGALRARVYDDEVRKWIA 360
Query: 364 EVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAAL 423
E+G++ +GKRLVNS EGPPTF QPKMTLDKLLEYG MLVQEQENVKRVQLADKYLSEAAL
Sbjct: 361 EIGVDGVGKRLVNSLEGPPTFAQPKMTLDKLLEYGNMLVQEQENVKRVQLADKYLSEAAL 420
Query: 424 GDANDDAIKNGSFYG 438
GDAN DAIK GSFYG
Sbjct: 421 GDANQDAIKTGSFYG 435
>gi|307136240|gb|ADN34076.1| ribulose bisphosphate carboxylase/oxygenase activase 1 [Cucumis
melo subsp. melo]
Length = 474
Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/438 (81%), Positives = 396/438 (90%), Gaps = 5/438 (1%)
Query: 5 VSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILS-KSFKVVS---E 60
++T GAVN +PL +NG+ V SS FLG +LKK + + ++ S SFKVV+ E
Sbjct: 1 MATAGAVNR-IPLSLNGAIAGPSVQSSTFLGSNLKKANFRFPNSKVSSGSSFKVVAVAEE 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DE+KQT++D+W GLA+DISDDQQDITRGKGMVD+LFQAP +GTH V+SSY+Y+S GL
Sbjct: 60 IDEKKQTNKDKWKGLAFDISDDQQDITRGKGMVDSLFQAPTGAGTHDPVLSSYEYLSAGL 119
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
RQY+LDN ++G YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120 RQYNLDNDVEGFYIAPAFMDKLVVHITKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVF 179
Query: 181 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 240
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAGAGR+GG
Sbjct: 180 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGG 239
Query: 241 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 300
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 301 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360
MEKFYWAPTREDRIGVCSGIFR+DN+PKEDI+KLVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 300 MEKFYWAPTREDRIGVCSGIFRSDNIPKEDIIKLVDTFPGQSIDFFGALRARVYDDEVRK 359
Query: 361 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 420
W S VG+E I K+LVNSKEGPPT EQPKMTL+KLLEYG MLVQEQENVKRVQLADKYLSE
Sbjct: 360 WASSVGVENIAKKLVNSKEGPPTLEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSE 419
Query: 421 AALGDANDDAIKNGSFYG 438
AALGDAN+DAIK G+FYG
Sbjct: 420 AALGDANEDAIKRGTFYG 437
>gi|118489408|gb|ABK96507.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 461
Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/436 (82%), Positives = 399/436 (91%), Gaps = 4/436 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSS-KVSQQRILSKSFKVVS 59
MAA +STVGAVN A PL +NGS S VP+S F G SLKKVSS + + +I S SFKVV+
Sbjct: 1 MAATISTVGAVNRA-PLALNGSGAGSTVPTSAFFGNSLKKVSSSRFTNSKISSGSFKVVA 59
Query: 60 E-YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
E YDEEKQT +DRW GL D+SDDQQDITRGKGMVD+LFQAP +GTH V+SSY+Y+SQ
Sbjct: 60 EEYDEEKQTEKDRWGGLVTDMSDDQQDITRGKGMVDSLFQAPQGTGTHNPVLSSYEYLSQ 119
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
GLR Y+LDN +DG YIAPAFMDK+VVHI+KNF++LPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 120 GLRTYNLDNMMDGYYIAPAFMDKIVVHISKNFMSLPNIKVPLILGIWGGKGQGKSFQCEL 179
Query: 179 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGR 237
VFAKMGI+PIMMSAGELESGNAGEPAKLIRQRYREAADIIKK GKMCCLFINDLDAGAGR
Sbjct: 180 VFAKMGISPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGR 239
Query: 238 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 297
+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+NPRVPIIVTGNDFSTLYAPLIR
Sbjct: 240 LGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIR 299
Query: 298 DGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDE 357
DGRMEKFYWAPTR+DRIGVC GIF+TDNVP++DIVKLVDTFPGQSIDFFGALRARVYDDE
Sbjct: 300 DGRMEKFYWAPTRDDRIGVCIGIFKTDNVPQDDIVKLVDTFPGQSIDFFGALRARVYDDE 359
Query: 358 VRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
VRKW+S VG+E IGK+LVNS+EGPPTFEQP MT++KL EYG MLV+EQENVKRVQLADKY
Sbjct: 360 VRKWVSGVGVESIGKKLVNSREGPPTFEQPAMTVEKLFEYGNMLVKEQENVKRVQLADKY 419
Query: 418 LSEAALGDANDDAIKN 433
LS+AALG+AN DAI++
Sbjct: 420 LSDAALGEANQDAIES 435
>gi|10720249|sp|O98997.2|RCA_PHAAU RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|8954287|gb|AAD20019.2| rubisco activase [Vigna radiata]
Length = 439
Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/441 (81%), Positives = 399/441 (90%), Gaps = 7/441 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKK-VSSKVSQQRILSKSFKVVS 59
MAA VSTVGAVN A+ L +NGS + P+S F G SLKK V+S+V ++ + SFK+V+
Sbjct: 1 MAASVSTVGAVNRAI-LNLNGSGAGASAPTSAFFGTSLKKAVASRVPNSKVTNGSFKIVA 59
Query: 60 ---EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E +E +QT++DRW GLAYDISDDQQDITRGKGMVD LFQAPM++GTHYAVMSSY+Y+
Sbjct: 60 AEKEIEESQQTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYL 119
Query: 117 SQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 176
S GLRQ LDN DG YIAPAF+DK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQC
Sbjct: 120 STGLRQ--LDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQC 177
Query: 177 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236
ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC LFINDLDAGAG
Sbjct: 178 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLDAGAG 237
Query: 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 296
R+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAPLI
Sbjct: 238 RLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLI 297
Query: 297 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 356
RDGRMEKFYWAPTR+DR+GVC GIFRTD VP+EDI KLVDTFPGQSIDFFGALRARVYDD
Sbjct: 298 RDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDD 357
Query: 357 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 416
EVRKWIS VG++ GK+LVNSKEGPPTF+QPKM+LDKLL+YG MLVQEQENVKRVQLADK
Sbjct: 358 EVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADK 417
Query: 417 YLSEAALGDANDDAIKNGSFY 437
YL+EAALG+AN+DAIK+GSF+
Sbjct: 418 YLNEAALGNANEDAIKSGSFF 438
>gi|449441384|ref|XP_004138462.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Cucumis sativus]
Length = 474
Score = 744 bits (1922), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/438 (82%), Positives = 395/438 (90%), Gaps = 5/438 (1%)
Query: 5 VSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKV-SQQRILSKSFKVVS---E 60
++T GAVN +PL +NG+ V SS FLG SLKK + + S + SFKVV+ E
Sbjct: 1 MATAGAVNR-IPLSLNGAIAGPSVQSSAFLGSSLKKANFRFPSSKVSSGSSFKVVAVAEE 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DE+KQTS+D+W GLA+D+SDDQQDITRGKGMVDTLFQAP +GTH V+SSY+Y+S GL
Sbjct: 60 IDEKKQTSKDKWKGLAFDVSDDQQDITRGKGMVDTLFQAPSGAGTHDPVLSSYEYLSAGL 119
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
RQY+ DN +DG YIAPAFMDK+VVHI+KNF+ LPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120 RQYNFDNNVDGFYIAPAFMDKLVVHISKNFMKLPNIKVPLILGIWGGKGQGKSFQCELVF 179
Query: 181 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 240
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAGAGR+GG
Sbjct: 180 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGG 239
Query: 241 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 300
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 301 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360
MEKFYWAPTREDRIGVCSGIFR+DN+PKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR
Sbjct: 300 MEKFYWAPTREDRIGVCSGIFRSDNIPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRN 359
Query: 361 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 420
W+ VG+E I K+LVNSKEGPPTFEQPKMTL+KLLEYG MLVQEQENVKRVQLADKYLSE
Sbjct: 360 WVCSVGVENIAKKLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSE 419
Query: 421 AALGDANDDAIKNGSFYG 438
AALGDAN+DAIK+G+FYG
Sbjct: 420 AALGDANEDAIKSGTFYG 437
>gi|449450762|ref|XP_004143131.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Cucumis sativus]
gi|449496654|ref|XP_004160190.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Cucumis sativus]
gi|239837354|gb|ACS29559.1| chloroplast rubisco activase [Cucumis sativus]
Length = 611
Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/432 (80%), Positives = 387/432 (89%), Gaps = 4/432 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MAA VST+GAVN +N S+ LVP+S FLG LK VSS+ + ++++ +FK+V+E
Sbjct: 1 MAATVSTIGAVNRT---TLNNSNYGGLVPNSAFLGSRLK-VSSRFTTSKMVTGNFKIVAE 56
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DEEKQT +D+W GLA+D SDDQQDITRGKG+ D LFQAPM +GTH AV+SSY+YIS GL
Sbjct: 57 QDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGL 116
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
R YS DN +DG YIAPAFMDK+ VHI KNFL LPN+KVPLILG+WGGKGQGKSFQCELVF
Sbjct: 117 RDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVF 176
Query: 181 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 240
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR+GG
Sbjct: 177 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGG 236
Query: 241 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 300
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 237 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 296
Query: 301 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360
M+KFYWAPTREDRIG+C+GIFRTD VP EDIVKLVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 297 MDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 356
Query: 361 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 420
W VG+ERIG+ LVNSKE PPTF+QPKMT++KLLEYG MLV EQENVKRV+LADKYL+E
Sbjct: 357 WAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKLADKYLNE 416
Query: 421 AALGDANDDAIK 432
AALGDAN+D ++
Sbjct: 417 AALGDANEDDVQ 428
>gi|12643757|sp|Q40460.1|RCA1_TOBAC RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
1, chloroplastic; Short=RA 1; Short=RuBisCO activase 1;
Flags: Precursor
gi|1006835|gb|AAA78277.1| rubisco activase precursor [Nicotiana tabacum]
Length = 442
Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/441 (80%), Positives = 391/441 (88%), Gaps = 5/441 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSK-VSQQRILSKSFKVVS 59
MA VST+GAVN PL +N S + VPS+ F GK+LKKV K VS ++ +KS ++V+
Sbjct: 1 MATSVSTIGAVNKT-PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRIVA 59
Query: 60 E---YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E D +KQT DRW GL D SDDQQDITRGKGMVD+LFQAP +GTH+AV+ SY+Y+
Sbjct: 60 EQIDVDPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYV 119
Query: 117 SQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 176
SQGLRQY+LDN LDG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQC
Sbjct: 120 SQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 179
Query: 177 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236
ELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCLFINDLDAGAG
Sbjct: 180 ELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 239
Query: 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 296
RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLI
Sbjct: 240 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLI 299
Query: 297 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 356
RDGRMEKFYWAPTREDRIGVC+GIFRTDNVP ED+VK+VD FPGQSIDFFGALRARVYDD
Sbjct: 300 RDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDD 359
Query: 357 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 416
EVRKW+S GIE+IG +L+NS +GPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLADK
Sbjct: 360 EVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADK 419
Query: 417 YLSEAALGDANDDAIKNGSFY 437
YL EAALGDAN DAI NGSF+
Sbjct: 420 YLKEAALGDANADAINNGSFF 440
>gi|356569334|ref|XP_003552857.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Glycine max]
Length = 431
Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/437 (81%), Positives = 396/437 (90%), Gaps = 8/437 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MAA VSTVGAVN AL L +NGS + PSS F G SLKKV + RI++ K E
Sbjct: 1 MAASVSTVGAVNRAL-LNLNGSGAGASAPSSAFFGTSLKKVIAS----RIVAVEEK--KE 53
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
+E +QT +DRW GLAYDISDDQQDITRGKG+VD+LFQAP ++GTHYAVMSSY+Y+S GL
Sbjct: 54 IEETQQTDKDRWKGLAYDISDDQQDITRGKGLVDSLFQAPQDAGTHYAVMSSYEYLSTGL 113
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
RQY LDN +DG YIAPAFMDK+VVHI+KNF+ LPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 114 RQY-LDNKMDGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVF 172
Query: 181 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 240
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMC LFINDLDAGAGR+GG
Sbjct: 173 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCALFINDLDAGAGRLGG 232
Query: 241 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 300
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 233 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 292
Query: 301 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360
MEKFYWAPTREDRIGVC+GIFRTD +P++DIVKLVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 293 MEKFYWAPTREDRIGVCTGIFRTDGIPEQDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 352
Query: 361 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 420
WIS VG++ +GK+LVNSK+GPPTFEQPKMTL+KLL YG MLVQEQENVKRVQLADKYL+E
Sbjct: 353 WISGVGVDSVGKKLVNSKDGPPTFEQPKMTLEKLLLYGNMLVQEQENVKRVQLADKYLNE 412
Query: 421 AALGDANDDAIKNGSFY 437
AALG+AN+DAI+ G+F+
Sbjct: 413 AALGNANEDAIQRGTFF 429
>gi|158726716|gb|ABW80752.1| chloroplast ribulose 1,5-bisphosphate carboxylase/oxygenase
activase [Flaveria bidentis]
Length = 438
Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/438 (81%), Positives = 387/438 (88%), Gaps = 9/438 (2%)
Query: 5 VSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKK-VSSKVSQQRILSKSFKVVS---E 60
+ +GA N PL SS + VPSS FLG SLKK V+S+ + +FK+ + E
Sbjct: 3 TAAIGATFNRTPL----SSGVAAVPSSSFLGTSLKKIVNSRHAVNNNKFSTFKIFAAEKE 58
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
+E KQT +DRW GLAYD+SDDQQDITRGKGMVD+LFQAP +SGTH+AVMSSY+YIS GL
Sbjct: 59 IEETKQTDKDRWRGLAYDMSDDQQDITRGKGMVDSLFQAPQDSGTHFAVMSSYEYISTGL 118
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
R Y LDN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILG+WGGKGQGKSFQCELVF
Sbjct: 119 RTY-LDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVF 177
Query: 181 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 240
AKMGI PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG
Sbjct: 178 AKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 237
Query: 241 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 300
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 238 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 297
Query: 301 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360
MEKFYWAPTR+DRIGVC GIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 298 MEKFYWAPTRDDRIGVCIGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 357
Query: 361 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 420
WI EVG+E IGK+LVNS+EGPPTFEQPKMT+DKLLEYG MLVQEQENVKRVQLAD YL
Sbjct: 358 WIGEVGVETIGKKLVNSREGPPTFEQPKMTIDKLLEYGYMLVQEQENVKRVQLADTYLDS 417
Query: 421 AALGDANDDAIKNGSFYG 438
AALGDAN DA++ G F+
Sbjct: 418 AALGDANKDAMETGKFFA 435
>gi|312281705|dbj|BAJ33718.1| unnamed protein product [Thellungiella halophila]
Length = 437
Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/439 (80%), Positives = 391/439 (89%), Gaps = 3/439 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N A PL +NGS + + VP++ FLGK + S + S SFKVV+
Sbjct: 1 MAAAVSTVGAINRA-PLSLNGSGAGAASVPATTFLGKKVVTTSRFAQSNKKSSGSFKVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E+KQT DRW GLAYD+SDDQQDITRGKG+VD++FQAPM +GTH+AV+SSY+YISQG
Sbjct: 60 -VKEDKQTDGDRWKGLAYDMSDDQQDITRGKGLVDSVFQAPMGTGTHHAVLSSYEYISQG 118
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LRQY+LDN +DG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 119 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELV 178
Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 MAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMG 238
Query: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 299
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+N RVPIIVTGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDG 298
Query: 300 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 359
RMEKFYWAPTREDRIGVC GIFRTD + EDIV LVD FPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRTDKINDEDIVTLVDQFPGQSIDFFGALRARVYDDEVR 358
Query: 360 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 419
K++ +G+E+IGKRLVNS+EGPP FEQP+MTL+KL+EYG MLV EQENVKRVQLAD+YL+
Sbjct: 359 KFVEGLGVEKIGKRLVNSREGPPVFEQPEMTLEKLMEYGNMLVMEQENVKRVQLADQYLN 418
Query: 420 EAALGDANDDAIKNGSFYG 438
EAALGDAN DAI G+FYG
Sbjct: 419 EAALGDANADAIDRGTFYG 437
>gi|297827581|ref|XP_002881673.1| hypothetical protein ARALYDRAFT_482998 [Arabidopsis lyrata subsp.
lyrata]
gi|297327512|gb|EFH57932.1| hypothetical protein ARALYDRAFT_482998 [Arabidopsis lyrata subsp.
lyrata]
Length = 474
Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/439 (80%), Positives = 389/439 (88%), Gaps = 3/439 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N A PL +NGS S + P+S FLGK + VS + + SFKV++
Sbjct: 1 MAAAVSTVGAINRA-PLSLNGSGSGAASAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E+KQT DRW GLAYD SDDQQDITRGKG+VD++FQAPM +GTH+AV+SSY+YISQG
Sbjct: 60 -VKEDKQTDGDRWKGLAYDTSDDQQDITRGKGLVDSVFQAPMGTGTHHAVLSSYEYISQG 118
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LRQY+LDN +DG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 119 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELV 178
Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 MAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRMG 238
Query: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 299
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDG 298
Query: 300 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 359
RMEKFYWAPTREDRIGVC GIFRTD + EDIV LVD FPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVR 358
Query: 360 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 419
K++ +G+E+IGKRLVNS+EGPP FEQP+MTL+KL+EYG MLV EQENVKRVQLAD YLS
Sbjct: 359 KFVEGLGVEKIGKRLVNSREGPPVFEQPEMTLEKLMEYGNMLVMEQENVKRVQLADTYLS 418
Query: 420 EAALGDANDDAIKNGSFYG 438
+AALGDAN DAI G+FYG
Sbjct: 419 QAALGDANADAIDRGTFYG 437
>gi|21950712|gb|AAM78591.1| rubisco activase [Chenopodium quinoa]
Length = 438
Score = 734 bits (1896), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/440 (80%), Positives = 390/440 (88%), Gaps = 4/440 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSK--VSQQRILSKSFKVV 58
MA VSTVGA A PL +NGSS + VP+S FLG SLKK +S S R S + K
Sbjct: 1 MATAVSTVGAATKA-PLNLNGSSAGASVPTSAFLGSSLKKHTSVRFPSSSRASSMTVKA- 58
Query: 59 SEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
++Y+E KQ++ DRWA LA DISDDQ DI RGKGMVD+LFQAPM+SGTH V SS +Y SQ
Sbjct: 59 ADYEESKQSNTDRWAHLATDISDDQLDIRRGKGMVDSLFQAPMDSGTHVPVQSSLEYESQ 118
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
GLR+Y++DN L YIAP+FMDK+VVHITKN+LNLPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 119 GLRKYNIDNMLGNFYIAPSFMDKIVVHITKNYLNLPNIKVPLILGIWGGKGQGKSFQCEL 178
Query: 179 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 238
VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII KGKMC LFINDLDAGAGRM
Sbjct: 179 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIAKGKMCALFINDLDAGAGRM 238
Query: 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 298
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLIRD
Sbjct: 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRD 298
Query: 299 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 358
GRMEKFYWAPTREDRIGV +GIFRTDNVP++ +VKLVDTFPGQSIDFFGALRARVYDDEV
Sbjct: 299 GRMEKFYWAPTREDRIGVATGIFRTDNVPEDHVVKLVDTFPGQSIDFFGALRARVYDDEV 358
Query: 359 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
RKW+SEVGI+ +GK+LVNS++GPP FEQPKMTL+KLLEYG MLVQEQENVKRVQLADKYL
Sbjct: 359 RKWVSEVGIDAVGKKLVNSRDGPPVFEQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYL 418
Query: 419 SEAALGDANDDAIKNGSFYG 438
SEAALGDAN DAI +G+F+G
Sbjct: 419 SEAALGDANKDAIASGAFFG 438
>gi|383470439|gb|AFH35543.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase [Brassica oleracea]
Length = 438
Score = 734 bits (1895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/440 (80%), Positives = 390/440 (88%), Gaps = 4/440 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKV-SQQRILSKSFKVV 58
MAA VSTVGA+N A PL +NGS + + VP++ FLGK S S + + SFKVV
Sbjct: 1 MAAAVSTVGAINRA-PLSLNGSGAGAASVPATTFLGKKAVTASRFTQSNNKKSNGSFKVV 59
Query: 59 SEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
+ E+KQT DRW GLAYD SDDQQDITRGKGMVD++FQAPM +GTH AV+SSY+YISQ
Sbjct: 60 A-VKEDKQTDGDRWKGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHNAVLSSYEYISQ 118
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
GL+QY+LDN +DGL+IAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 119 GLKQYNLDNMMDGLFIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCEL 178
Query: 179 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 238
V AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRM
Sbjct: 179 VMAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGAGRM 238
Query: 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 298
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAPLIRD
Sbjct: 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRD 298
Query: 299 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 358
GRMEKFYWAPTREDRIGVC GIFRTDNV EDIV LVD FPGQSIDFFGALRARVYDDEV
Sbjct: 299 GRMEKFYWAPTREDRIGVCKGIFRTDNVKDEDIVTLVDQFPGQSIDFFGALRARVYDDEV 358
Query: 359 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
RK++ +G+E+IGKRLVNS+EGPP FEQP MTL+KL+EYG MLV EQENVKRVQLAD+YL
Sbjct: 359 RKFVEGLGVEKIGKRLVNSREGPPVFEQPAMTLEKLMEYGNMLVMEQENVKRVQLADQYL 418
Query: 419 SEAALGDANDDAIKNGSFYG 438
+EAALGDAN DAI G+FYG
Sbjct: 419 NEAALGDANADAIGRGTFYG 438
>gi|169930138|gb|ACB05667.1| chloroplast rubisco activase [Capsicum annuum]
Length = 439
Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/440 (78%), Positives = 391/440 (88%), Gaps = 5/440 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSK-VSQQRILSKSFKVVS 59
MAA VST+GA N A PL +N S + VPS+ F GKSLKKV K +S ++ ++S ++V+
Sbjct: 1 MAASVSTIGAANKA-PLSLNNSVSGTSVPSTAFFGKSLKKVYGKGISSPKVSNRSLRIVA 59
Query: 60 E---YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E DE+KQT DRW GL D+SDDQQDI RGKGMVD+LFQAP +GTH+A+M+SY+Y+
Sbjct: 60 EEKEIDEKKQTDGDRWKGLGTDVSDDQQDIARGKGMVDSLFQAPTGTGTHHAIMNSYEYL 119
Query: 117 SQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 176
SQGL+QYS+DN LDG YIAPAFMDK+VVHITKNFL LPN+K+PLILG+WGGKGQGKSFQC
Sbjct: 120 SQGLKQYSMDNKLDGFYIAPAFMDKLVVHITKNFLQLPNIKIPLILGVWGGKGQGKSFQC 179
Query: 177 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236
ELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCLFINDLDAGAG
Sbjct: 180 ELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGTMCCLFINDLDAGAG 239
Query: 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 296
RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLI
Sbjct: 240 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENCRVPIIVTGNDFSTLYAPLI 299
Query: 297 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 356
RDGRMEKFYWAPTREDRIGVC GIFRTDNVP E +VK+VD+FPGQSIDFFGALRARVYDD
Sbjct: 300 RDGRMEKFYWAPTREDRIGVCKGIFRTDNVPDEAVVKIVDSFPGQSIDFFGALRARVYDD 359
Query: 357 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 416
EVRKW+S GIE +G++L+NS++GPPTFEQPKMTL+KLLEYG MLV+EQENVKRVQLA+
Sbjct: 360 EVRKWVSGTGIEAVGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVKEQENVKRVQLAET 419
Query: 417 YLSEAALGDANDDAIKNGSF 436
YL EAALGDAN DAI G+F
Sbjct: 420 YLKEAALGDANADAINTGAF 439
>gi|30687995|ref|NP_850320.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|166835|gb|AAA20203.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|15450671|gb|AAK96607.1| At2g39730/T5I7.3 [Arabidopsis thaliana]
gi|23397139|gb|AAN31853.1| unknown protein [Arabidopsis thaliana]
gi|330254621|gb|AEC09715.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
Length = 446
Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/439 (79%), Positives = 387/439 (88%), Gaps = 3/439 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSL-VPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N A PL +NGS ++ P+S FLGK + VS + + SFKV++
Sbjct: 1 MAAAVSTVGAINRA-PLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E+KQT DRW GLAYD SDDQQDITRGKGMVD++FQAPM +GTH+AV+SSY+Y+SQG
Sbjct: 60 -VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQG 118
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LRQY+LDN +DG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 119 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELV 178
Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 MAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMG 238
Query: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 299
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPII TGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDG 298
Query: 300 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 359
RMEKFYWAPTREDRIGVC GIFRTD + EDIV LVD FPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVR 358
Query: 360 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 419
K++ +G+E+IGKRLVNS+EGPP FEQP+MT +KL+EYG MLV EQENVKRVQLA+ YLS
Sbjct: 359 KFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 418
Query: 420 EAALGDANDDAIKNGSFYG 438
+AALGDAN DAI G+FYG
Sbjct: 419 QAALGDANADAIGRGTFYG 437
>gi|380707033|gb|AFD97617.1| rubisco activase (chloroplast) [Ammopiptanthus mongolicus]
Length = 439
Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/439 (80%), Positives = 401/439 (91%), Gaps = 3/439 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKV-SQQRILSKSFKVVS 59
MAA VSTVGAVN PL +NGS + VPSS F G +LKKV+S++ + ++ S SFKVV+
Sbjct: 1 MAASVSTVGAVNRT-PLNLNGSGGGASVPSSAFFGSNLKKVASRLPNTTKVSSGSFKVVA 59
Query: 60 -EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
E D+ KQT +DRW G AYDISDDQQDITRGKGMVD+LFQAP ++GTHYAV+SSY+YIS
Sbjct: 60 AEIDDSKQTDKDRWKGPAYDISDDQQDITRGKGMVDSLFQAPSDAGTHYAVLSSYEYIST 119
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
GLR+Y+LDN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 120 GLREYNLDNNVDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCEL 179
Query: 179 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 238
VFAKMGINPIMMSAGELESGNAGEPAKL+R+RYREAADII+KGKMC LFIN LDAGAGR+
Sbjct: 180 VFAKMGINPIMMSAGELESGNAGEPAKLMRRRYREAADIIRKGKMCALFINGLDAGAGRL 239
Query: 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 298
GGTTQYTVNNQMVNATLMNIADNPT+VQLPGMYN+EE+PRVPIIVTGNDFSTLYAPLIRD
Sbjct: 240 GGTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEESPRVPIIVTGNDFSTLYAPLIRD 299
Query: 299 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 358
GRMEKFYWAPTR+DR+GVC GIFRTDN+ ++D+VKLVDTFPGQSIDFFGALRARVYDDEV
Sbjct: 300 GRMEKFYWAPTRDDRVGVCKGIFRTDNITEDDVVKLVDTFPGQSIDFFGALRARVYDDEV 359
Query: 359 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
RKWI +G+E +GK+LVNSKEGPPTFEQP MTL KLLEYG MLVQEQENVKRVQLA++Y+
Sbjct: 360 RKWIGGIGVEGVGKKLVNSKEGPPTFEQPSMTLQKLLEYGNMLVQEQENVKRVQLAEQYM 419
Query: 419 SEAALGDANDDAIKNGSFY 437
SEAALG+AN+DAIK+GSF+
Sbjct: 420 SEAALGNANEDAIKSGSFF 438
>gi|30687999|ref|NP_850321.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|330254622|gb|AEC09716.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
Length = 441
Score = 733 bits (1892), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/439 (79%), Positives = 387/439 (88%), Gaps = 3/439 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSL-VPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N A PL +NGS ++ P+S FLGK + VS + + SFKV++
Sbjct: 1 MAAAVSTVGAINRA-PLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E+KQT DRW GLAYD SDDQQDITRGKGMVD++FQAPM +GTH+AV+SSY+Y+SQG
Sbjct: 60 -VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQG 118
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LRQY+LDN +DG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 119 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELV 178
Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 MAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMG 238
Query: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 299
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPII TGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDG 298
Query: 300 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 359
RMEKFYWAPTREDRIGVC GIFRTD + EDIV LVD FPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVR 358
Query: 360 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 419
K++ +G+E+IGKRLVNS+EGPP FEQP+MT +KL+EYG MLV EQENVKRVQLA+ YLS
Sbjct: 359 KFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 418
Query: 420 EAALGDANDDAIKNGSFYG 438
+AALGDAN DAI G+FYG
Sbjct: 419 QAALGDANADAIGRGTFYG 437
>gi|18405145|ref|NP_565913.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|12643259|sp|P10896.2|RCA_ARATH RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|11762250|gb|AAG40401.1|AF325049_1 At2g39730 [Arabidopsis thaliana]
gi|166834|gb|AAA20202.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
gi|2642155|gb|AAB87122.1| expressed protein [Arabidopsis thaliana]
gi|15810188|gb|AAL06995.1| At2g39730/T5I7.3_ [Arabidopsis thaliana]
gi|21594581|gb|AAM66023.1| unknown [Arabidopsis thaliana]
gi|330254620|gb|AEC09714.1| ribulose bisphosphate carboxylase/oxygenase activase [Arabidopsis
thaliana]
Length = 474
Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/439 (79%), Positives = 387/439 (88%), Gaps = 3/439 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSL-VPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N A PL +NGS ++ P+S FLGK + VS + + SFKV++
Sbjct: 1 MAAAVSTVGAINRA-PLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E+KQT DRW GLAYD SDDQQDITRGKGMVD++FQAPM +GTH+AV+SSY+Y+SQG
Sbjct: 60 -VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQG 118
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LRQY+LDN +DG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 119 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELV 178
Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 MAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMG 238
Query: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 299
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPII TGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDG 298
Query: 300 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 359
RMEKFYWAPTREDRIGVC GIFRTD + EDIV LVD FPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVR 358
Query: 360 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 419
K++ +G+E+IGKRLVNS+EGPP FEQP+MT +KL+EYG MLV EQENVKRVQLA+ YLS
Sbjct: 359 KFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 418
Query: 420 EAALGDANDDAIKNGSFYG 438
+AALGDAN DAI G+FYG
Sbjct: 419 QAALGDANADAIGRGTFYG 437
>gi|15450379|gb|AAK96483.1| At2g39730/T5I7.3 [Arabidopsis thaliana]
Length = 474
Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/439 (79%), Positives = 386/439 (87%), Gaps = 3/439 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSL-VPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N A PL +NGS ++ P+S FLGK + VS + + SFKV++
Sbjct: 1 MAAAVSTVGAINRA-PLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E+KQT DRW GLAYD SDDQQDITRGKGMVD++FQAPM +GTH+AV+SSY+Y+SQG
Sbjct: 60 -VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQG 118
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LRQY+LDN +DG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 119 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELV 178
Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 MAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMG 238
Query: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 299
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPII TGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDG 298
Query: 300 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 359
RMEKFYWAPTREDRIGVC GIFRTD + EDIV LVD FP QSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPDQSIDFFGALRARVYDDEVR 358
Query: 360 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 419
K++ +G+E+IGKRLVNS+EGPP FEQP+MT +KL+EYG MLV EQENVKRVQLA+ YLS
Sbjct: 359 KFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 418
Query: 420 EAALGDANDDAIKNGSFYG 438
+AALGDAN DAI G+FYG
Sbjct: 419 QAALGDANADAIGRGTFYG 437
>gi|23308421|gb|AAN18180.1| At2g39730/T5I7.3 [Arabidopsis thaliana]
Length = 474
Score = 726 bits (1875), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/439 (79%), Positives = 385/439 (87%), Gaps = 3/439 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSL-VPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N A PL +NGS ++ P+S FLGK + VS + + SFKV++
Sbjct: 1 MAAAVSTVGAINRA-PLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E+KQT DRW GLAYD SDDQQDITRGKGMVD++FQAPM +GTH+AV+SSY+Y+SQG
Sbjct: 60 -VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQG 118
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LRQY+LDN +DG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 119 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELV 178
Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCL INDLDAGAGRMG
Sbjct: 179 MAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLLINDLDAGAGRMG 238
Query: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 299
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPII TGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDG 298
Query: 300 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 359
RMEKFYWAPTREDRIGVC GIFRTD + EDIV LVD FP QSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPDQSIDFFGALRARVYDDEVR 358
Query: 360 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 419
K++ +G+E+IGKRLVNS+EGPP FEQP+MT +KL+EYG MLV EQENVKRVQLA+ YLS
Sbjct: 359 KFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 418
Query: 420 EAALGDANDDAIKNGSFYG 438
+AALGDAN DAI G+FYG
Sbjct: 419 QAALGDANADAIGRGTFYG 437
>gi|12643758|sp|Q40565.1|RCA2_TOBAC RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
2, chloroplastic; Short=RA 2; Short=RuBisCO activase 2;
Flags: Precursor
gi|19990|emb|CAA78703.1| ribulose bisphosphate carboxylase activase [Nicotiana tabacum]
Length = 439
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/440 (78%), Positives = 386/440 (87%), Gaps = 5/440 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSK-VSQQRILSKSFKVVS 59
MA VST+GA N A PL +N S + VPS+ F GK+LKKV K VS ++ ++S ++ +
Sbjct: 1 MATSVSTIGAANKA-PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNRSLRIAA 59
Query: 60 E---YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E D +KQT DRW GL D SDDQQDI RGKGMVD+LFQAP +GTH+AV+ SY+Y+
Sbjct: 60 EEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYV 119
Query: 117 SQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 176
SQGLRQY++DNTLDG YIAP+FMDK+VVHITKNFL LPN+KVPLILG+WGGKGQGKSFQC
Sbjct: 120 SQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQC 179
Query: 177 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236
ELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG +CCLFINDLDAGAG
Sbjct: 180 ELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNICCLFINDLDAGAG 239
Query: 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 296
RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLI
Sbjct: 240 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLI 299
Query: 297 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 356
RDGRMEKFYWAPTREDRIGVC GIFRTDNVP+E ++K+VDTFPGQSIDFFGALRARVYDD
Sbjct: 300 RDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDD 359
Query: 357 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 416
EVRKW+S GIE IG +L+NS +GPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLA+
Sbjct: 360 EVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAET 419
Query: 417 YLSEAALGDANDDAIKNGSF 436
YL EAALGDAN DAI G+F
Sbjct: 420 YLKEAALGDANADAINTGNF 439
>gi|10720248|sp|O64981.1|RCA_PHAVU RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|3033513|gb|AAC12868.1| rubisco activase [Phaseolus vulgaris]
Length = 441
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/441 (79%), Positives = 395/441 (89%), Gaps = 5/441 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKV-SSKVSQQRILSKSFKVVS 59
MAA +STVGAVN L L +NGS + PSS F G SLKKV SS+V ++ S SFK+V+
Sbjct: 1 MAASLSTVGAVNRTL-LNLNGSGGGASGPSSAFFGTSLKKVISSRVPNSKLTSGSFKIVA 59
Query: 60 ---EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E +E +QT DRW GLAYD+SDDQQDITRGKG+VD+LFQAPM++GTHYAV+SS+ Y+
Sbjct: 60 ADKEIEETQQTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYL 119
Query: 117 SQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 176
S GLRQY+ DN DG YIAPAF+DK+VVHI KNF+ LPN+KVPLILG+WGGKGQGKSFQC
Sbjct: 120 SAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQC 179
Query: 177 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236
ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA+D+IKKGKMC LFINDLDAGAG
Sbjct: 180 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMCVLFINDLDAGAG 239
Query: 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 296
R+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+N RVPIIVTGNDFSTLYAPLI
Sbjct: 240 RLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLI 299
Query: 297 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 356
RDGRMEKFYWAPTREDRIGVC GIFRTD VP++DIV+LVD PGQSIDFFGALRARVYDD
Sbjct: 300 RDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDD 359
Query: 357 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 416
EVRKWIS VG++ +GK+LVNSKEGPPTF+QPKMTLDKLL Y MLVQEQENVKRVQLAD+
Sbjct: 360 EVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQ 419
Query: 417 YLSEAALGDANDDAIKNGSFY 437
YL+EAALG+AN+DAIK+GSF+
Sbjct: 420 YLNEAALGNANEDAIKSGSFF 440
>gi|449459892|ref|XP_004147680.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic-like [Cucumis sativus]
Length = 443
Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/444 (79%), Positives = 394/444 (88%), Gaps = 9/444 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKV-SSKVSQQRILSKSFKVV- 58
MAA ++VG VN+A PL + GS + VPSSVF G SLKKV +S+V + S SFKV+
Sbjct: 1 MAASAASVGVVNHA-PLSLKGSGSTTSVPSSVFFGNSLKKVVNSRVVNPKPSSGSFKVMA 59
Query: 59 ----SEYDEEKQTSQ-DRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSY 113
S+ + EK+T + DRWAGL DISDDQQDITRGKGMVD++FQAPM++GTHYAVMSSY
Sbjct: 60 VESTSDENLEKKTKKIDRWAGLGTDISDDQQDITRGKGMVDSVFQAPMQAGTHYAVMSSY 119
Query: 114 DYISQGLRQY-SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGK 172
+Y+SQG + Y +DN L GLYIAPAFMDK+VVHITKNFL+LPN+KVPLILG+WGGKGQGK
Sbjct: 120 EYLSQGRKSYDGMDNVLGGLYIAPAFMDKLVVHITKNFLSLPNIKVPLILGLWGGKGQGK 179
Query: 173 SFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232
SFQCELVFAKMGI PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM CLFINDLD
Sbjct: 180 SFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMSCLFINDLD 239
Query: 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292
AGAGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLY
Sbjct: 240 AGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLY 299
Query: 293 APLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRAR 352
APLIRDGRMEKFYWAPTREDRIGVC GIFRTDNV +DIVKLVDTFPGQSIDFFGALRAR
Sbjct: 300 APLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRAR 359
Query: 353 VYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQ 412
VYDDEVRKW++ VG++ IGK+LVNSKE PP FEQP M+L+KLLEYG MLVQEQENVKRVQ
Sbjct: 360 VYDDEVRKWVTGVGVQSIGKKLVNSKEPPPKFEQPTMSLEKLLEYGGMLVQEQENVKRVQ 419
Query: 413 LADKYLSEAALGDANDDAIKNGSF 436
LA+ YL+EAALG+AN+DAI G+F
Sbjct: 420 LAETYLNEAALGNANEDAITRGAF 443
>gi|337263422|gb|AEI69347.1| chloroplast rubisco activase [Ophiopogon japonicus]
Length = 435
Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/437 (78%), Positives = 386/437 (88%), Gaps = 3/437 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS- 59
MA VSTVGAVN ++PL ++GSS + P+S F G +LKKV+ ++ R+ + SFKV++
Sbjct: 1 MATAVSTVGAVN-SVPLSLHGSSSGAPAPTSAFFGSNLKKVNPSLTHGRVQTGSFKVMAV 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
+ DE KQT DRW L D SDDQQDI RGKG+VD LFQAPM GTH AV++SY+YISQG
Sbjct: 60 DLDETKQTKTDRWQ-LHKDTSDDQQDIVRGKGLVDPLFQAPMGDGTHEAVLNSYEYISQG 118
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LR Y ++N +DG YIAP FMDK+VVHITKN+++LPN+KVPLILGIWGGKGQGK+FQCELV
Sbjct: 119 LRDYGMENKMDGFYIAPEFMDKLVVHITKNYMDLPNIKVPLILGIWGGKGQGKTFQCELV 178
Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239
F KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII KGKMCCLFINDLDAGAGRMG
Sbjct: 179 FRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIAKGKMCCLFINDLDAGAGRMG 238
Query: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 299
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDG 298
Query: 300 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 359
RMEKFYWAPTR DRIGVC+GIF TDNV +DIVKLVD FPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTRSDRIGVCTGIFMTDNVAVQDIVKLVDAFPGQSIDFFGALRARVYDDEVR 358
Query: 360 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 419
KWIS++G++++GKRLVNS EG PTFEQPKMTL+KL++YG MLVQEQENVKRVQLADKYLS
Sbjct: 359 KWISDIGVDKVGKRLVNSAEGAPTFEQPKMTLEKLMDYGNMLVQEQENVKRVQLADKYLS 418
Query: 420 EAALGDANDDAIKNGSF 436
EAALGDAN DAIK G F
Sbjct: 419 EAALGDANVDAIKTGKF 435
>gi|449503259|ref|XP_004161913.1| PREDICTED: LOW QUALITY PROTEIN: ribulose bisphosphate
carboxylase/oxygenase activase 1, chloroplastic-like
[Cucumis sativus]
Length = 443
Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/444 (79%), Positives = 393/444 (88%), Gaps = 9/444 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKV-SSKVSQQRILSKSFKVV- 58
MAA ++VG VN+A PL + GS + VPSSVF G SLKKV +S+V + S SFKV+
Sbjct: 1 MAASAASVGVVNHA-PLSLKGSGSTTSVPSSVFFGNSLKKVVNSRVVNPKPSSGSFKVMA 59
Query: 59 ----SEYDEEKQTSQ-DRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSY 113
S+ + EK+T + DRWAGL DISDDQQDITRGKGMVD++FQAPM++GTHYAVMSSY
Sbjct: 60 VESTSDENLEKKTKKIDRWAGLGTDISDDQQDITRGKGMVDSVFQAPMQAGTHYAVMSSY 119
Query: 114 DYISQGLRQY-SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGK 172
+Y+SQG + Y +DN L GLYIAPAFMDK+VVHITKNFL+LPN+KVPLILG+WGGKGQGK
Sbjct: 120 EYLSQGRKSYDGMDNVLGGLYIAPAFMDKLVVHITKNFLSLPNIKVPLILGLWGGKGQGK 179
Query: 173 SFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232
SFQCELVFAKMGI PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM CLFINDLD
Sbjct: 180 SFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMSCLFINDLD 239
Query: 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292
AGAGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLY
Sbjct: 240 AGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLY 299
Query: 293 APLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRAR 352
APLIRDGRMEKFYWAPTREDRIGVC GIFRTDNV +DIVKLVDTFPGQSIDFFGALRAR
Sbjct: 300 APLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRAR 359
Query: 353 VYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQ 412
VYDDEVRKW++ VG++ IGK+LVNSKE PP FEQP M+L KLLEYG MLVQEQENVKRVQ
Sbjct: 360 VYDDEVRKWVTGVGVQSIGKKLVNSKEPPPKFEQPTMSLXKLLEYGGMLVQEQENVKRVQ 419
Query: 413 LADKYLSEAALGDANDDAIKNGSF 436
LA+ YL+EAALG+AN+DAI G+F
Sbjct: 420 LAETYLNEAALGNANEDAITRGAF 443
>gi|13430332|gb|AAK25798.1|AF338237_1 rubisco activase, partial [Zantedeschia aethiopica]
Length = 436
Score = 723 bits (1865), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/399 (84%), Positives = 370/399 (92%), Gaps = 1/399 (0%)
Query: 41 VSSKVSQQRILSKSFKVVS-EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQA 99
V+ + R + + KV++ + DE KQT DRWAGL D SDDQQDITRGKGMVD+LFQA
Sbjct: 1 VNPSLGHGRTSTGTLKVMAADLDESKQTKTDRWAGLYTDTSDDQQDITRGKGMVDSLFQA 60
Query: 100 PMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVP 159
PM GTH V+SSY+YIS GLR ++LDNT++GLYIAPAFMDK+VVHITKNF+NLPN+K+P
Sbjct: 61 PMGDGTHNPVLSSYEYISTGLRSFNLDNTVNGLYIAPAFMDKLVVHITKNFMNLPNIKIP 120
Query: 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 219
LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+
Sbjct: 121 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIR 180
Query: 220 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 279
KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++ENPRV
Sbjct: 181 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENPRV 240
Query: 280 PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFP 339
PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC+GIFR+DNVPKED++KLVDTFP
Sbjct: 241 PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCTGIFRSDNVPKEDVIKLVDTFP 300
Query: 340 GQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGR 399
GQSIDFFGALRARVYDDEVRKWI+E+G++ +GKRLVNS EGPPTF QPKMTLDKLLEYG
Sbjct: 301 GQSIDFFGALRARVYDDEVRKWIAEIGVDGVGKRLVNSLEGPPTFAQPKMTLDKLLEYGN 360
Query: 400 MLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
MLVQEQENVKRVQLADKYLSEAALGDAN DAIK GSFYG
Sbjct: 361 MLVQEQENVKRVQLADKYLSEAALGDANQDAIKTGSFYG 399
>gi|12620883|gb|AAG61121.1|AF329935_1 ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2
[Gossypium hirsutum]
Length = 435
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/394 (86%), Positives = 369/394 (93%), Gaps = 3/394 (0%)
Query: 48 QRILSKSFKVVS---EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESG 104
+++ S SFKV++ E DEE QT +DRW GLAYDISDDQQDITRGKGMVD+LFQAPM G
Sbjct: 5 RQVPSGSFKVMAAEKEIDEETQTEKDRWKGLAYDISDDQQDITRGKGMVDSLFQAPMNDG 64
Query: 105 THYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGI 164
THYAVMSSY+YISQGL+ Y+LDN +DG YIAPAFMDK+VVHI+KNF++LPN+KVPLILGI
Sbjct: 65 THYAVMSSYEYISQGLKTYNLDNNMDGFYIAPAFMDKLVVHISKNFMSLPNIKVPLILGI 124
Query: 165 WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC 224
WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC
Sbjct: 125 WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC 184
Query: 225 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVT 284
LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVT
Sbjct: 185 ALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVT 244
Query: 285 GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSID 344
GNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIFRTD V EDIVKLVDTFPGQSID
Sbjct: 245 GNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFRTDGVRDEDIVKLVDTFPGQSID 304
Query: 345 FFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQE 404
FFGALRARVYDDEVRKWISEVG+ +GK+LVNS+EGPPTFEQPKMT++KLLEYG MLV E
Sbjct: 305 FFGALRARVYDDEVRKWISEVGVASVGKKLVNSREGPPTFEQPKMTIEKLLEYGNMLVAE 364
Query: 405 QENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
QENVKRVQLADKYLSEAALG+AN+D+I G+FYG
Sbjct: 365 QENVKRVQLADKYLSEAALGEANEDSINRGTFYG 398
>gi|108864713|gb|ABG22614.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
Length = 428
Score = 722 bits (1864), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/410 (83%), Positives = 374/410 (91%), Gaps = 4/410 (0%)
Query: 33 FLGKSLKK-VSSKVSQQRILSK--SFKVVS-EYDEEKQTSQDRWAGLAYDISDDQQDITR 88
FLGK LKK V+S V+ S FKV++ E DE KQT QDRW GLAYDISDDQQDITR
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITR 78
Query: 89 GKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITK 148
GKG VD+LFQAP GTH AV+SSY+Y+SQGLR Y DNT+ G YIAPAFMDK+VVHI+K
Sbjct: 79 GKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISK 138
Query: 149 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 208
NF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR
Sbjct: 139 NFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 198
Query: 209 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 268
QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP
Sbjct: 199 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 258
Query: 269 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK 328
GMYN+E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFRTDNVP
Sbjct: 259 GMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPD 318
Query: 329 EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPK 388
EDIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+S+ G+E IGKRLVNS+EGPP FEQPK
Sbjct: 319 EDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPK 378
Query: 389 MTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
MT++KL+EYG MLV+EQENVKRVQLA++YLSEAALGDAN DA+K GSFYG
Sbjct: 379 MTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 428
>gi|8918361|dbj|BAA97584.1| RuBisCO activase small isoform precursor [Oryza sativa]
gi|62733169|gb|AAX95286.1| RuBisCO activase small isoform precursor [Oryza sativa Japonica
Group]
gi|77552726|gb|ABA95523.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
gi|215694316|dbj|BAG89309.1| unnamed protein product [Oryza sativa Japonica Group]
gi|347737190|gb|AEP20546.1| ribulose bisphosphate carboxylase activase small isoform [Oryza
sativa Japonica Group]
Length = 433
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/410 (83%), Positives = 374/410 (91%), Gaps = 4/410 (0%)
Query: 33 FLGKSLKK-VSSKVSQQRILSK--SFKVVS-EYDEEKQTSQDRWAGLAYDISDDQQDITR 88
FLGK LKK V+S V+ S FKV++ E DE KQT QDRW GLAYDISDDQQDITR
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITR 78
Query: 89 GKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITK 148
GKG VD+LFQAP GTH AV+SSY+Y+SQGLR Y DNT+ G YIAPAFMDK+VVHI+K
Sbjct: 79 GKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISK 138
Query: 149 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 208
NF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR
Sbjct: 139 NFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 198
Query: 209 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 268
QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP
Sbjct: 199 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 258
Query: 269 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK 328
GMYN+E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFRTDNVP
Sbjct: 259 GMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPD 318
Query: 329 EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPK 388
EDIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+S+ G+E IGKRLVNS+EGPP FEQPK
Sbjct: 319 EDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPK 378
Query: 389 MTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
MT++KL+EYG MLV+EQENVKRVQLA++YLSEAALGDAN DA+K GSFYG
Sbjct: 379 MTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 428
>gi|109940135|sp|P93431.2|RCA_ORYSJ RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|8918359|dbj|BAA97583.1| RuBisCO activase large isoform precursor [Oryza sativa (japonica
cultivar-group)]
gi|32352158|dbj|BAC78572.1| ribulose-bisphosphate carboxylase activase large isoform precursor
protein [Oryza sativa Japonica Group]
gi|77552725|gb|ABA95522.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
gi|125578108|gb|EAZ19330.1| hypothetical protein OsJ_34880 [Oryza sativa Japonica Group]
gi|218186228|gb|EEC68655.1| hypothetical protein OsI_37096 [Oryza sativa Indica Group]
Length = 466
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/410 (83%), Positives = 374/410 (91%), Gaps = 4/410 (0%)
Query: 33 FLGKSLKK-VSSKVSQQRILSK--SFKVVS-EYDEEKQTSQDRWAGLAYDISDDQQDITR 88
FLGK LKK V+S V+ S FKV++ E DE KQT QDRW GLAYDISDDQQDITR
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITR 78
Query: 89 GKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITK 148
GKG VD+LFQAP GTH AV+SSY+Y+SQGLR Y DNT+ G YIAPAFMDK+VVHI+K
Sbjct: 79 GKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISK 138
Query: 149 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 208
NF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR
Sbjct: 139 NFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 198
Query: 209 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 268
QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP
Sbjct: 199 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 258
Query: 269 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK 328
GMYN+E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFRTDNVP
Sbjct: 259 GMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPD 318
Query: 329 EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPK 388
EDIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+S+ G+E IGKRLVNS+EGPP FEQPK
Sbjct: 319 EDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPK 378
Query: 389 MTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
MT++KL+EYG MLV+EQENVKRVQLA++YLSEAALGDAN DA+K GSFYG
Sbjct: 379 MTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 428
>gi|225580059|gb|ACN94267.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase [Solenostemon scutellarioides]
Length = 436
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/438 (80%), Positives = 386/438 (88%), Gaps = 5/438 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MAA VST+GAVN +PL +NGS VPSS F+G SLKK S S ++ S SFKVV+E
Sbjct: 1 MAAAVSTIGAVNR-VPLNLNGSGGGGAVPSSSFMGSSLKKAMSNPSG-KVSSGSFKVVAE 58
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
+K + DRW GL D+SDDQQDI RGKGMVD+LFQAP GTH A+M+SY+YISQG
Sbjct: 59 --AKKPSPGDRWGGLIEDVSDDQQDIVRGKGMVDSLFQAPSGMGTHDAIMNSYEYISQGQ 116
Query: 121 RQY-SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
+ Y LDNTLDGLYIAPAFMDK+VVH++KNF+ LPN+KVPLILG+WGGKGQGKSFQCELV
Sbjct: 117 KTYDHLDNTLDGLYIAPAFMDKLVVHLSKNFMTLPNIKVPLILGVWGGKGQGKSFQCELV 176
Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239
F KMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMG
Sbjct: 177 FRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMG 236
Query: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 299
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLIRDG
Sbjct: 237 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDG 296
Query: 300 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 359
RMEKFYWAPTREDRIGVC GIFRTD VP E +V+LVDTFPGQSIDFFGALRARVYDDEVR
Sbjct: 297 RMEKFYWAPTREDRIGVCKGIFRTDGVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVR 356
Query: 360 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 419
KW+S VG+E IG RLVNS+EGPP FEQPKMTL+KLLEYG MLVQEQENVKRVQLADKYL
Sbjct: 357 KWVSGVGVENIGTRLVNSREGPPKFEQPKMTLEKLLEYGFMLVQEQENVKRVQLADKYLK 416
Query: 420 EAALGDANDDAIKNGSFY 437
+AALGDAN DAI+ G+F+
Sbjct: 417 DAALGDANKDAIERGTFF 434
>gi|407911668|gb|AFU50382.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
large isoform a [Ipomoea batatas]
Length = 484
Score = 721 bits (1862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/448 (78%), Positives = 393/448 (87%), Gaps = 11/448 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVS------SKVSQQRIL--- 51
MAA VST+GAVN +L L +N S S VPSS F GK LKK S SK+S R +
Sbjct: 1 MAATVSTIGAVNKSL-LSLNNGSVGSSVPSSGFFGKGLKKTSGQRVAMSKISNSRQMRVA 59
Query: 52 -SKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVM 110
E DE+KQT+QDRW GL DISDDQQDITRGKG+VD+LFQAPM +GTH+AV+
Sbjct: 60 AEAPEAAEPEIDEQKQTNQDRWKGLVEDISDDQQDITRGKGLVDSLFQAPMGTGTHHAVL 119
Query: 111 SSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQ 170
SSY+YISQGLR+Y++DNTLDG YIAPAFMDK+VVHITKNFL LPN+K+PLILG+WGGKGQ
Sbjct: 120 SSYEYISQGLREYNIDNTLDGFYIAPAFMDKLVVHITKNFLKLPNIKIPLILGVWGGKGQ 179
Query: 171 GKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 230
GKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MC LFIND
Sbjct: 180 GKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCVLFIND 239
Query: 231 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 290
LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFST
Sbjct: 240 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFST 299
Query: 291 LYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALR 350
LYAPLIRDGRMEKFYWAPTREDRIGVC GIFRTD VP E +VKLVDTFPGQSIDFFGALR
Sbjct: 300 LYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPDEHVVKLVDTFPGQSIDFFGALR 359
Query: 351 ARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKR 410
ARVYDDEVRK+I+ +G++ + +RL+NS++GPP F+QPKMT++KLL+YG MLVQEQENVKR
Sbjct: 360 ARVYDDEVRKFIASIGVDAVNERLLNSRDGPPKFDQPKMTIEKLLQYGYMLVQEQENVKR 419
Query: 411 VQLADKYLSEAALGDANDDAIKNGSFYG 438
VQLADKYL EAALGDAN+DAIKNG+FYG
Sbjct: 420 VQLADKYLKEAALGDANEDAIKNGNFYG 447
>gi|357155667|ref|XP_003577196.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase B,
chloroplastic-like [Brachypodium distachyon]
Length = 440
Score = 721 bits (1861), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/426 (81%), Positives = 372/426 (87%), Gaps = 20/426 (4%)
Query: 28 VPSSVFLGKSLKK----------------VSSKVSQQRILSKSFKVVSEYDEEKQTSQDR 71
PSS FLGK LKK SS+ S R+++ + K V DE KQT DR
Sbjct: 15 TPSS-FLGKKLKKQSNNCFSNNGGSSKTIKSSRPSLVRVMAAANKDV---DEGKQTDGDR 70
Query: 72 WAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDG 131
W GLAYDISDDQQDITRGKG+VD LFQAPM GTH AV+SSY+YISQGLRQY DNT+DG
Sbjct: 71 WRGLAYDISDDQQDITRGKGIVDALFQAPMGDGTHEAVLSSYEYISQGLRQYDFDNTMDG 130
Query: 132 LYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191
LYIAPAFMDK+VVH+ KNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS
Sbjct: 131 LYIAPAFMDKLVVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 190
Query: 192 AGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
AGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV
Sbjct: 191 AGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 250
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
NATLMNIAD PTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE
Sbjct: 251 NATLMNIADAPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 310
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
DRIGVC GIFRTD VP E +V+LVD FPGQSIDFFGALRARVYDDEVRKW+ E+G+E I
Sbjct: 311 DRIGVCKGIFRTDGVPDEAVVRLVDMFPGQSIDFFGALRARVYDDEVRKWVGEIGVENIS 370
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAI 431
KRLVNSKEGPP FEQPKMT+ KL+EYG MLVQEQENVKRVQLADKYLSEAALG+ANDDA+
Sbjct: 371 KRLVNSKEGPPKFEQPKMTISKLMEYGHMLVQEQENVKRVQLADKYLSEAALGEANDDAM 430
Query: 432 KNGSFY 437
K GSFY
Sbjct: 431 KTGSFY 436
>gi|13430336|gb|AAK25800.1|AF338239_1 rubisco activase [Zantedeschia aethiopica]
Length = 426
Score = 720 bits (1859), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/382 (87%), Positives = 362/382 (94%)
Query: 57 VVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
+ ++ DE KQT DRWAGL D SDDQQDITRGKGMVD+LFQAPM GTH V+SSY+YI
Sbjct: 8 MAADLDESKQTKTDRWAGLYTDTSDDQQDITRGKGMVDSLFQAPMGDGTHNPVLSSYEYI 67
Query: 117 SQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 176
S GLR ++LDNT++GLYIAPAFMDK+VVHITKNF+NLPN+K+PLILGIWGGKGQGKSFQC
Sbjct: 68 STGLRSFNLDNTVNGLYIAPAFMDKLVVHITKNFMNLPNIKIPLILGIWGGKGQGKSFQC 127
Query: 177 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236
ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAG
Sbjct: 128 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAG 187
Query: 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 296
RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++ENPRVPIIVTGNDFSTLYAPLI
Sbjct: 188 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENPRVPIIVTGNDFSTLYAPLI 247
Query: 297 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 356
RDGRMEKFYWAPTR+DR+GVC+GIFR+DNVPKED++KLVDTFPGQSIDFFGALRARVYDD
Sbjct: 248 RDGRMEKFYWAPTRDDRVGVCTGIFRSDNVPKEDVIKLVDTFPGQSIDFFGALRARVYDD 307
Query: 357 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 416
EVRKWI+E+G++ +GKRLVNS EGPPTF QPKMTLDKLLEYG MLVQEQENVKRVQLADK
Sbjct: 308 EVRKWIAEIGVDGVGKRLVNSLEGPPTFAQPKMTLDKLLEYGNMLVQEQENVKRVQLADK 367
Query: 417 YLSEAALGDANDDAIKNGSFYG 438
YLSEAALGDAN DAIK GSFYG
Sbjct: 368 YLSEAALGDANQDAIKTGSFYG 389
>gi|62733297|gb|AAX95414.1| RuBisCO activase small isoform precursor [Oryza sativa Japonica
Group]
Length = 466
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/410 (83%), Positives = 374/410 (91%), Gaps = 4/410 (0%)
Query: 33 FLGKSLKK-VSSKVSQQRILSK--SFKVVS-EYDEEKQTSQDRWAGLAYDISDDQQDITR 88
FLGK LKK V+S V+ S FKV++ E DE KQT QDRW GLAYDISDDQQDITR
Sbjct: 57 FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITR 116
Query: 89 GKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITK 148
GKG VD+LFQAP GTH AV+SSY+Y+SQGLR Y DNT+ G YIAPAFMDK+VVHI+K
Sbjct: 117 GKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISK 176
Query: 149 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 208
NF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR
Sbjct: 177 NFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 236
Query: 209 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 268
QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP
Sbjct: 237 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 296
Query: 269 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK 328
GMYN+E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFRTDNVP
Sbjct: 297 GMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPD 356
Query: 329 EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPK 388
EDIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+S+ G+E IGKRLVNS+EGPP FEQPK
Sbjct: 357 EDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPK 416
Query: 389 MTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
MT++KL+EYG MLV+EQENVKRVQLA++YLSEAALGDAN DA+K GSFYG
Sbjct: 417 MTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 466
>gi|7960277|gb|AAF71272.1|AF251264_1 ribulose bisphosphate carboxylase activase B [Triticum aestivum]
Length = 432
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/416 (81%), Positives = 371/416 (89%), Gaps = 9/416 (2%)
Query: 31 SVFLGKSLKKVSSKVS--------QQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDISDD 82
+ FLGK +KK + ++ R++ ++ E DE KQT DRW GLAYDISDD
Sbjct: 17 TTFLGKKVKKQAGALNYYHGGNKINNRVV-RAMAAKKELDEGKQTDADRWKGLAYDISDD 75
Query: 83 QQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKV 142
QQDITRGKG+VD+LFQAPM GTH A++SSY+YISQGLR+Y DNT+DGLYIAPAFMDK+
Sbjct: 76 QQDITRGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKL 135
Query: 143 VVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 202
+VH+ KNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE
Sbjct: 136 IVHLAKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 195
Query: 203 PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNP 262
PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD P
Sbjct: 196 PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAP 255
Query: 263 TNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFR 322
TNVQ PGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR
Sbjct: 256 TNVQFPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR 315
Query: 323 TDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPP 382
TDNVP E +V+LVDTFPGQSIDFFGALRARVYDDEVRKW+ E+G+E I KRLVNS+EGPP
Sbjct: 316 TDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPP 375
Query: 383 TFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
TF+QPKMT++KL+EYG MLVQEQENVKRVQLADKYLSEAALG ANDDA+ G+FYG
Sbjct: 376 TFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMATGAFYG 431
>gi|407911670|gb|AFU50383.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
large isoform b [Ipomoea batatas]
Length = 484
Score = 719 bits (1855), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/448 (78%), Positives = 392/448 (87%), Gaps = 11/448 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSS------KVSQQRIL--- 51
MAA VST+GAVN +L L +N S S VPSS F GK LKK S K+S R +
Sbjct: 1 MAATVSTIGAVNKSL-LSLNNGSVGSSVPSSGFFGKGLKKTSGQRVAMPKISNSRQMRVA 59
Query: 52 -SKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVM 110
E DE+KQT+QDRW GL DISDDQQDITRGKG+VD+LFQAPM +GTH+AV+
Sbjct: 60 AEAPEAAEPEIDEQKQTNQDRWKGLVEDISDDQQDITRGKGLVDSLFQAPMGTGTHHAVL 119
Query: 111 SSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQ 170
SSY+YISQGLR+Y++DNTLDG YIAPAFMDK+VVHITKNFL LPN+K+PLILG+WGGKGQ
Sbjct: 120 SSYEYISQGLREYNIDNTLDGFYIAPAFMDKLVVHITKNFLKLPNIKIPLILGVWGGKGQ 179
Query: 171 GKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 230
GKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MC LFIND
Sbjct: 180 GKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCVLFIND 239
Query: 231 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 290
LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFST
Sbjct: 240 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFST 299
Query: 291 LYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALR 350
LYAPLIRDGRMEKFYWAPTREDRIGVC GIFRTD VP E +VKLVDTFPGQSIDFFGALR
Sbjct: 300 LYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPDEHVVKLVDTFPGQSIDFFGALR 359
Query: 351 ARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKR 410
ARVYDDEVRK+I+ +G++ + +RL+NS++GPP F+QPKMT++KLL+YG MLVQEQENVKR
Sbjct: 360 ARVYDDEVRKFIASIGVDAVNERLLNSRDGPPKFDQPKMTIEKLLQYGYMLVQEQENVKR 419
Query: 411 VQLADKYLSEAALGDANDDAIKNGSFYG 438
VQLADKYL EAALGDAN+DAIKNG+FYG
Sbjct: 420 VQLADKYLKEAALGDANEDAIKNGNFYG 447
>gi|10720247|sp|O49074.1|RCA_SOLPN RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|2707330|gb|AAC15236.1| rubisco activase [Solanum pennellii]
Length = 459
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/435 (78%), Positives = 385/435 (88%), Gaps = 4/435 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSK-VSQQRILSKSFKVVS 59
MAA VST+GA + A PL +N S + VPS+ F GKSLKKV +K VS ++ +++ +VV+
Sbjct: 1 MAASVSTIGAASKA-PLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVSSPKVSNRNLRVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
+ E +T +DRW GL + SDDQQDI RGKG+VD+LFQAP +GTH+A+M+SY+Y+SQ
Sbjct: 60 Q--EVDETKEDRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQA 117
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
L+ Y LDN LDG YIAPAFMDK+VVHITKNFL LPN+KVPLILG+WGGKGQGKSFQCELV
Sbjct: 118 LKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELV 177
Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239
F KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCLFINDLDAGAGRMG
Sbjct: 178 FRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMG 237
Query: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 299
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLIRDG
Sbjct: 238 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDG 297
Query: 300 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 359
RMEKFYWAPTREDRIGVC GIFRTDNVP+E +VK+VD+FPGQSIDFFGALRARVYDDEVR
Sbjct: 298 RMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVR 357
Query: 360 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 419
KW+S GIE IG++L+NS++GPPTFEQPKMTL+KLLEYG MLVQEQENVKRVQLA+ YL
Sbjct: 358 KWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLK 417
Query: 420 EAALGDANDDAIKNG 434
EAALGDAN DAI G
Sbjct: 418 EAALGDANADAINTG 432
>gi|407911664|gb|AFU50380.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
large isoform [Ipomoea batatas]
gi|407911672|gb|AFU50384.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
large isoform c [Ipomoea batatas]
Length = 484
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/448 (78%), Positives = 391/448 (87%), Gaps = 11/448 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSS------KVSQQRIL--- 51
MAA VST+GAVN +L L +N S S VPSS F GK LKK K+S R +
Sbjct: 1 MAATVSTIGAVNKSL-LSLNNGSVGSSVPSSGFFGKGLKKTGGHRVAMPKISNSRQMRVA 59
Query: 52 -SKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVM 110
E DE+KQT+QDRW GL DISDDQQDITRGKG+VDTLFQAPM +GTH+AV+
Sbjct: 60 AEAPEAAEPEIDEQKQTNQDRWKGLVEDISDDQQDITRGKGLVDTLFQAPMGTGTHHAVL 119
Query: 111 SSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQ 170
SSY+YISQGLR+Y++DNTLDG YIAPAFMDK+VVHITKNFL LPN+K+PLILG+WGGKGQ
Sbjct: 120 SSYEYISQGLREYNIDNTLDGFYIAPAFMDKLVVHITKNFLKLPNIKIPLILGVWGGKGQ 179
Query: 171 GKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 230
GKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MC LFIND
Sbjct: 180 GKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCVLFIND 239
Query: 231 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 290
LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFST
Sbjct: 240 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFST 299
Query: 291 LYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALR 350
LYAPLIRDGRMEKFYWAPTREDRIGVC GIFRTD VP E +VKLVDTFPGQSIDFFGALR
Sbjct: 300 LYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPDEHVVKLVDTFPGQSIDFFGALR 359
Query: 351 ARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKR 410
ARVYDDEVRK+I+ +G++ + +RL+NS++GPP F+QPKMT++KLL+YG MLVQEQENVKR
Sbjct: 360 ARVYDDEVRKFIASIGVDAVNERLLNSRDGPPKFDQPKMTIEKLLQYGYMLVQEQENVKR 419
Query: 411 VQLADKYLSEAALGDANDDAIKNGSFYG 438
VQLADKYL EAALGDAN+DAIKNG+FYG
Sbjct: 420 VQLADKYLKEAALGDANEDAIKNGNFYG 447
>gi|224140291|ref|XP_002323516.1| predicted protein [Populus trichocarpa]
gi|222868146|gb|EEF05277.1| predicted protein [Populus trichocarpa]
Length = 476
Score = 717 bits (1851), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/439 (79%), Positives = 384/439 (87%), Gaps = 11/439 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKV-SSKVSQQRILSKSFKVVS 59
MAA VSTVGA N L L + G+ P+S F SLK V SK++ QR+L+++ K+ +
Sbjct: 1 MAASVSTVGAGNRGL-LNLKGAGSGPSWPTSAFFDNSLKTVLGSKITNQRLLTRNLKLAA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
EYD+EKQ S+D+W GLA+D SDDQQDITRGKGMVD+LFQAPM +GTHYAVMSSYDY S+G
Sbjct: 60 EYDKEKQPSKDKWKGLAFDTSDDQQDITRGKGMVDSLFQAPMGTGTHYAVMSSYDYTSKG 119
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LRQY LDN +DG YIA +FMDK+VVHITKNFL LPN+K KGQGKSFQCELV
Sbjct: 120 LRQYKLDNNMDGFYIASSFMDKLVVHITKNFLQLPNIKA--------SKGQGKSFQCELV 171
Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGRM 238
FAKMGINP++MSAGELESGNAGEPAKLIRQRYREAADIIKK GKMCCLFINDLDAGAGR
Sbjct: 172 FAKMGINPVVMSAGELESGNAGEPAKLIRQRYREAADIIKKRGKMCCLFINDLDAGAGRF 231
Query: 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 298
GGTTQYTVNNQMVNATLMNIADNPT+VQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRD
Sbjct: 232 GGTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 291
Query: 299 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 358
GRMEKFYWAPTREDRIGVC+GIF +DNVP+EDIVKLV+TF GQSIDFFGALRAR YDDEV
Sbjct: 292 GRMEKFYWAPTREDRIGVCTGIFGSDNVPREDIVKLVNTFHGQSIDFFGALRARAYDDEV 351
Query: 359 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
RKWIS VG+E +GKRLVNSKEGPP EQPKMTL+KLLEYG MLV EQENVKRV+L+DKYL
Sbjct: 352 RKWISGVGVENVGKRLVNSKEGPPILEQPKMTLEKLLEYGNMLVLEQENVKRVRLSDKYL 411
Query: 419 SEAALGDANDDAIKNGSFY 437
EAALGDAN+DA+KNGSFY
Sbjct: 412 KEAALGDANEDAMKNGSFY 430
>gi|357155664|ref|XP_003577195.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase A,
chloroplastic-like [Brachypodium distachyon]
Length = 465
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/415 (82%), Positives = 376/415 (90%), Gaps = 5/415 (1%)
Query: 28 VPSSVFLGKSLKK-VSSKVSQQRILSKS--FKVVS-EYDEEKQTSQDRWAGLAYDISDDQ 83
P+S FLGK LKK V+S V+ +K+ F V++ E DE KQT QDRW GLAYDISDDQ
Sbjct: 15 TPTS-FLGKKLKKQVTSAVNYHGKSTKANRFTVMAKEVDESKQTDQDRWKGLAYDISDDQ 73
Query: 84 QDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVV 143
QDITRGKG+VD+LFQAPM GTH AV+SS +YISQGLR+Y DNT+ G YIAPAFMDK+V
Sbjct: 74 QDITRGKGIVDSLFQAPMGDGTHVAVLSSQEYISQGLRKYDFDNTMGGFYIAPAFMDKLV 133
Query: 144 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 203
VH++KNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP
Sbjct: 134 VHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 193
Query: 204 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 263
AKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PT
Sbjct: 194 AKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPT 253
Query: 264 NVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRT 323
NVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIF+T
Sbjct: 254 NVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCRGIFQT 313
Query: 324 DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPT 383
DN+ E ++K+VDTFPGQSIDFFGALRARVYDDEVRKW+S GIE IGK+LVNSK+GP +
Sbjct: 314 DNISDESVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSSTGIENIGKKLVNSKDGPVS 373
Query: 384 FEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
FEQPKMT++KLLEYG MLVQEQ+NVKRVQLADKY+SEAALGDAN DA+K GSFYG
Sbjct: 374 FEQPKMTIEKLLEYGHMLVQEQDNVKRVQLADKYMSEAALGDANSDAMKTGSFYG 428
>gi|78100212|gb|ABB20913.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2
[Gossypium hirsutum]
Length = 421
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/379 (87%), Positives = 360/379 (94%)
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E DEE QT +DRW GLAYDISDDQQDITRGKGMVD+LFQAPM GTHYAVMSSY+Y+SQG
Sbjct: 6 EIDEETQTEKDRWKGLAYDISDDQQDITRGKGMVDSLFQAPMNDGTHYAVMSSYEYLSQG 65
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
L+ Y+LDN +DG YIAPAFMDK+VVHITKNF++LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 66 LKTYNLDNNMDGFYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELV 125
Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239
FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAGAGRMG
Sbjct: 126 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRMG 185
Query: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 299
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDG
Sbjct: 186 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDG 245
Query: 300 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 359
RMEKFYWAPTR+DR+GVC GIFRTD +P EDIVKLVDTFPGQSIDFFGALRARVYDDEVR
Sbjct: 246 RMEKFYWAPTRDDRVGVCKGIFRTDGIPDEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 305
Query: 360 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 419
KWIS+VG+ +GK+LVNS++GPPTFEQPKMT++KLLEYG MLV EQENVKRVQLADKYLS
Sbjct: 306 KWISDVGVAGVGKKLVNSRDGPPTFEQPKMTIEKLLEYGNMLVAEQENVKRVQLADKYLS 365
Query: 420 EAALGDANDDAIKNGSFYG 438
EAALG+AN+D+I G+FYG
Sbjct: 366 EAALGEANEDSINRGTFYG 384
>gi|1778414|gb|AAC28134.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase [Oryza
sativa Japonica Group]
Length = 432
Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/410 (83%), Positives = 373/410 (90%), Gaps = 5/410 (1%)
Query: 33 FLGKSLKK-VSSKVSQQRILSK--SFKVVS-EYDEEKQTSQDRWAGLAYDISDDQQDITR 88
FLGK LKK V+S V+ S FKV++ E DE KQT QDRW GLAYDISDDQQDITR
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITR 78
Query: 89 GKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITK 148
GKG VD+LFQAP GTH AV+SSY+Y+SQGLR Y DNT+ G YIAP+FMDK+VVHI+K
Sbjct: 79 GKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPSFMDKLVVHISK 138
Query: 149 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 208
NF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN GEPAKLIR
Sbjct: 139 NFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN-GEPAKLIR 197
Query: 209 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 268
QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP
Sbjct: 198 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 257
Query: 269 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK 328
GMYN+E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFRTDNVP
Sbjct: 258 GMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPD 317
Query: 329 EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPK 388
EDIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+S+ G+E IGKRLVNS+EGPP FEQPK
Sbjct: 318 EDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPK 377
Query: 389 MTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
MT++KL+EYG MLV+EQENVKRVQLA++YLSEAALGDAN DA+K GSFYG
Sbjct: 378 MTIEKLIEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 427
>gi|10720253|sp|Q42450.1|RCAB_HORVU RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
B, chloroplastic; Short=RA B; Short=RuBisCO activase B;
Flags: Precursor
gi|167093|gb|AAA62703.1| ribulose 1,5-bisphosphate carboxylase activase [Hordeum vulgare]
gi|167095|gb|AAA63162.1| ribulose 1,5-bisphosphate carboxylase activase [Hordeum vulgare
subsp. vulgare]
Length = 425
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/411 (81%), Positives = 371/411 (90%), Gaps = 6/411 (1%)
Query: 31 SVFLGKSLKKVSSKVSQQRILSKSFKVVS---EYDEEKQTSQDRWAGLAYDISDDQQDIT 87
++FLGK +K ++ S+ +V++ E D+ KQT DRW GLAYDISDDQQDIT
Sbjct: 17 TIFLGKKVKNYYH--GGNKMKSRVVRVMAAKKELDQGKQTDADRWKGLAYDISDDQQDIT 74
Query: 88 RGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHIT 147
RGKG+VD+LFQAPM GTH A++SSY+YISQGLR+Y DNT+DGLYIAPAFMDK++VH+
Sbjct: 75 RGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLA 134
Query: 148 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 207
KNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN GEPAKLI
Sbjct: 135 KNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN-GEPAKLI 193
Query: 208 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 267
RQRYREAADII KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQL
Sbjct: 194 RQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQL 253
Query: 268 PGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP 327
PGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFRTDNVP
Sbjct: 254 PGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVP 313
Query: 328 KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQP 387
E +V+LVDTFPGQSIDFFGALRARVYDDEVRKW+ E+G+E I KRLVNS+EGPPTF+QP
Sbjct: 314 DEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQP 373
Query: 388 KMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
KMT++KL+EYG MLVQEQENVKRVQLADKYLSEAALG ANDDA+K G+FYG
Sbjct: 374 KMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 424
>gi|296086200|emb|CBI31641.3| unnamed protein product [Vitis vinifera]
Length = 411
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/438 (78%), Positives = 379/438 (86%), Gaps = 29/438 (6%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRF-SLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MA VSTVGAVN AL L +NG+S + VPSS FLG SLKKV+S+ + ++ S SFKVV+
Sbjct: 1 MATAVSTVGAVNRAL-LSLNGASGAGASVPSSAFLGSSLKKVNSRFTHSKVSSGSFKVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E D++ QT +D+W GLA+D SDDQQDI RGKGMVD+LFQAPM++GTHYAVMSSY+YIS G
Sbjct: 60 EVDDDMQTEKDKWKGLAFDTSDDQQDIVRGKGMVDSLFQAPMDAGTHYAVMSSYEYISTG 119
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LRQY+LDN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 120 LRQYNLDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELV 179
Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239
F+KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLFINDLDAGAGR+G
Sbjct: 180 FSKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRLG 239
Query: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 299
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVP+IVTGNDFSTLYAPLIRDG
Sbjct: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPVIVTGNDFSTLYAPLIRDG 299
Query: 300 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 359
RMEKFYWAPTREDRIGVC+GIFRTDNVP EDIVKLVDTFPGQSIDFFGALRARVYDD VR
Sbjct: 300 RMEKFYWAPTREDRIGVCTGIFRTDNVPVEDIVKLVDTFPGQSIDFFGALRARVYDDMVR 359
Query: 360 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 419
WI+ +G++ YG MLVQEQENVKRVQLADKYL+
Sbjct: 360 DWIAGIGVD---------------------------TYGSMLVQEQENVKRVQLADKYLN 392
Query: 420 EAALGDANDDAIKNGSFY 437
EAALGDAN+DAIK+GSF+
Sbjct: 393 EAALGDANEDAIKSGSFF 410
>gi|162312077|gb|ABX84141.1| rubisco activase [Ipomoea batatas]
gi|407911674|gb|AFU50385.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
small isoform a [Ipomoea batatas]
Length = 439
Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/444 (76%), Positives = 382/444 (86%), Gaps = 14/444 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS- 59
MA VST+GAVN A P+ SL P++ F GKSLKKVS + + ++ + S
Sbjct: 1 MATSVSTIGAVNKA-PVGA------SLAPNTGFYGKSLKKVSFRNGSSKNMNWQIRASSD 53
Query: 60 ------EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSY 113
E DE KQT +DRW GL DISDDQQDITRGKG+VDTLFQAPM +GTH+AV+SSY
Sbjct: 54 PSPAQPEIDESKQTHEDRWKGLVEDISDDQQDITRGKGLVDTLFQAPMGTGTHHAVLSSY 113
Query: 114 DYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKS 173
+Y+SQG + YSLDN LDG YIAPAFMDK+VVHITKNFL LPN+K+PLILGIWGGKGQGKS
Sbjct: 114 EYVSQGQKTYSLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKIPLILGIWGGKGQGKS 173
Query: 174 FQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233
FQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+ I+KG MCCLFINDLDA
Sbjct: 174 FQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAENIRKGNMCCLFINDLDA 233
Query: 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 293
GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYA
Sbjct: 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYA 293
Query: 294 PLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARV 353
PLIRDGRMEKFYWAPTR+DR+GVC GIFRTD VP E +VKLVDTFPGQSIDFFGALRARV
Sbjct: 294 PLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPDEHVVKLVDTFPGQSIDFFGALRARV 353
Query: 354 YDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQL 413
YDDEVRK+++ +G+E++ +RL+NS+EG P F QPKMT++KLLEYG MLVQEQENVKRVQL
Sbjct: 354 YDDEVRKFVAGLGVEKVNERLLNSREGAPVFAQPKMTIEKLLEYGNMLVQEQENVKRVQL 413
Query: 414 ADKYLSEAALGDANDDAIKNGSFY 437
ADKYL EAALGDAN DAI NG+F+
Sbjct: 414 ADKYLKEAALGDANADAINNGTFF 437
>gi|407911676|gb|AFU50386.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
small isoform b [Ipomoea batatas]
Length = 439
Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/444 (76%), Positives = 382/444 (86%), Gaps = 14/444 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS- 59
MA VST+GAVN A P+ SL P++ F GKSLKKVS + + ++ + S
Sbjct: 1 MATSVSTIGAVNKA-PVGA------SLAPNTGFYGKSLKKVSFRNGSPKNMNWQIRASSD 53
Query: 60 ------EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSY 113
E DE KQT +DRW GL DISDDQQDITRGKG+VDTLFQAPM +GTH+AV+SSY
Sbjct: 54 PSPAKPEIDESKQTHEDRWKGLVEDISDDQQDITRGKGLVDTLFQAPMGTGTHHAVLSSY 113
Query: 114 DYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKS 173
+Y+SQG + YSLDN LDG YIAPAFMDK+VVHITKNFL LPN+K+PLILGIWGGKGQGKS
Sbjct: 114 EYVSQGQKTYSLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKIPLILGIWGGKGQGKS 173
Query: 174 FQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233
FQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+ I+KG MCCLFINDLDA
Sbjct: 174 FQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAENIRKGNMCCLFINDLDA 233
Query: 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 293
GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYA
Sbjct: 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYA 293
Query: 294 PLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARV 353
PLIRDGRMEKFYWAPTR+DR+GVC GIFRTD VP E +VKLVDTFPGQSIDFFGALRARV
Sbjct: 294 PLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPDEHVVKLVDTFPGQSIDFFGALRARV 353
Query: 354 YDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQL 413
YDDEVRK+++ +G+E++ +RL+NS+EG P F QPKMT++KLLEYG MLVQEQENVKRVQL
Sbjct: 354 YDDEVRKFVAGLGVEKVNERLLNSREGAPVFAQPKMTIEKLLEYGNMLVQEQENVKRVQL 413
Query: 414 ADKYLSEAALGDANDDAIKNGSFY 437
ADKYL EAALGDAN DAI NG+F+
Sbjct: 414 ADKYLKEAALGDANADAINNGTFF 437
>gi|407911666|gb|AFU50381.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
small isoform [Ipomoea batatas]
Length = 439
Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/444 (76%), Positives = 382/444 (86%), Gaps = 14/444 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS- 59
MA VST+GAVN A P+ SL P++ F GKSLKKVS + + ++ + S
Sbjct: 1 MATSVSTIGAVNKA-PVGA------SLAPNTGFYGKSLKKVSFRNGSPKNMNWQIRASSD 53
Query: 60 ------EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSY 113
E DE KQT +DRW GL DISDDQQDITRGKG+VDTLFQAPM +GTH+AV+SSY
Sbjct: 54 PSPAQPEIDESKQTHEDRWKGLVEDISDDQQDITRGKGLVDTLFQAPMGTGTHHAVLSSY 113
Query: 114 DYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKS 173
+Y+SQG + YSLDN LDG YIAPAFMDK+VVHITKNFL LPN+K+PLILGIWGGKGQGKS
Sbjct: 114 EYVSQGQKTYSLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKIPLILGIWGGKGQGKS 173
Query: 174 FQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233
FQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+ I+KG MCCLFINDLDA
Sbjct: 174 FQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAENIRKGNMCCLFINDLDA 233
Query: 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 293
GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYA
Sbjct: 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYA 293
Query: 294 PLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARV 353
PLIRDGRMEKFYWAPTR+DR+GVC GIFRTD VP E +VKLVDTFPGQSIDFFGALRARV
Sbjct: 294 PLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPDEHVVKLVDTFPGQSIDFFGALRARV 353
Query: 354 YDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQL 413
YDDEVRK+++ +G+E++ +RL+NS+EG P F QPKMT++KLLEYG MLVQEQENVKRVQL
Sbjct: 354 YDDEVRKFVAGLGVEKVNERLLNSREGAPVFAQPKMTIEKLLEYGNMLVQEQENVKRVQL 413
Query: 414 ADKYLSEAALGDANDDAIKNGSFY 437
ADKYL EAALGDAN DAI NG+F+
Sbjct: 414 ADKYLKEAALGDANADAINNGTFF 437
>gi|224109480|ref|XP_002315210.1| predicted protein [Populus trichocarpa]
gi|222864250|gb|EEF01381.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/386 (85%), Positives = 366/386 (94%), Gaps = 1/386 (0%)
Query: 54 SFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSY 113
SFKVV+EYDE+KQT +DRW GL D+SDDQQDI+RGKGMVD+LFQAP +GTH V++SY
Sbjct: 4 SFKVVAEYDEKKQTDKDRWGGLVTDMSDDQQDISRGKGMVDSLFQAPQGTGTHNPVLNSY 63
Query: 114 DYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKS 173
+Y+SQGLR Y+LDN +DG YIAPAFMDK+VVHI+KNF++LPN+KVPLILG+WGGKGQGKS
Sbjct: 64 EYLSQGLRTYNLDNNMDGFYIAPAFMDKLVVHISKNFMSLPNIKVPLILGVWGGKGQGKS 123
Query: 174 FQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLD 232
FQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK GKMCCLFINDLD
Sbjct: 124 FQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLD 183
Query: 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292
AGAGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLY
Sbjct: 184 AGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLY 243
Query: 293 APLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRAR 352
APLIRDGRMEKFYWAPTR+DRIGVC GIF++D +PKEDIVKLVDTFPGQSIDFFGALRAR
Sbjct: 244 APLIRDGRMEKFYWAPTRDDRIGVCIGIFKSDKIPKEDIVKLVDTFPGQSIDFFGALRAR 303
Query: 353 VYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQ 412
VYDDEVRKW+S VG++ IGK+LVNS+EGPPTFEQPKMT++KLLEYG MLVQEQENVKRVQ
Sbjct: 304 VYDDEVRKWVSGVGVDSIGKKLVNSREGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQ 363
Query: 413 LADKYLSEAALGDANDDAIKNGSFYG 438
LADKYLSEA+LG+AN D+I G+FYG
Sbjct: 364 LADKYLSEASLGEANQDSIDRGTFYG 389
>gi|407911678|gb|AFU50387.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
small isoform c [Ipomoea batatas]
Length = 439
Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/444 (76%), Positives = 382/444 (86%), Gaps = 14/444 (3%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS- 59
MA VST+GAVN A P+ SL P++ F GKSLKKVS + + ++ + S
Sbjct: 1 MATSVSTIGAVNKA-PVGA------SLAPNTGFYGKSLKKVSFRNGSPKNMNWQIRASSD 53
Query: 60 ------EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSY 113
E DE KQT +DRW GL DISDDQQDITRGKG+VDTLFQAPM +GTH+AV+SSY
Sbjct: 54 PSPAQPEIDESKQTHEDRWKGLVEDISDDQQDITRGKGLVDTLFQAPMGTGTHHAVLSSY 113
Query: 114 DYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKS 173
+Y+SQG + YSLDN LDG YIAPAFMDK+VVHITKNFL LPN+K+PLILGIWGGKGQGKS
Sbjct: 114 EYVSQGQKTYSLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKIPLILGIWGGKGQGKS 173
Query: 174 FQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233
FQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+ I+KG MCCLFINDLDA
Sbjct: 174 FQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAENIRKGNMCCLFINDLDA 233
Query: 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 293
GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYA
Sbjct: 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYA 293
Query: 294 PLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARV 353
PLIRDGRMEKFYWAPTR+DR+GVC GIF+TD VP E +VKLVDTFPGQSIDFFGALRARV
Sbjct: 294 PLIRDGRMEKFYWAPTRDDRVGVCKGIFKTDGVPDEHVVKLVDTFPGQSIDFFGALRARV 353
Query: 354 YDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQL 413
YDDEVRK+++ +G+E++ +RL+NS+EG P F QPKMT++KLLEYG MLVQEQENVKRVQL
Sbjct: 354 YDDEVRKFVAGLGVEKVNERLLNSREGAPVFAQPKMTIEKLLEYGNMLVQEQENVKRVQL 413
Query: 414 ADKYLSEAALGDANDDAIKNGSFY 437
ADKYL EAALGDAN DAI NG+F+
Sbjct: 414 ADKYLKEAALGDANADAINNGTFF 437
>gi|116789461|gb|ABK25255.1| unknown [Picea sitchensis]
Length = 440
Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/440 (75%), Positives = 379/440 (86%), Gaps = 2/440 (0%)
Query: 1 MAAVVSTVGA--VNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVV 58
MA + VG+ V++ LPL +S VPS+ F G LKK S S + FKVV
Sbjct: 1 MATAAAAVGSITVSSNLPLSSGQASILKTVPSTGFFGCGLKKTSFNASHTFTKANHFKVV 60
Query: 59 SEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
+E DE KQT +D+W GLA+D SDDQ DI RGKG VD+LFQAPM SGTH VMS+YDYIS
Sbjct: 61 AEIDEGKQTDKDKWKGLAFDESDDQMDIRRGKGKVDSLFQAPMGSGTHNVVMSTYDYIST 120
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
R Y DNT+DG YIAP+FMDK++VHI+KNF+NLPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 121 AQRTYDFDNTMDGYYIAPSFMDKLLVHISKNFMNLPNIKVPLILGIWGGKGQGKSFQCEL 180
Query: 179 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 238
VFAK+GINPIMMSAGELESG+AGEPAKL+R+RYREA+DI+KKGKMC LFINDLDAGAGRM
Sbjct: 181 VFAKLGINPIMMSAGELESGDAGEPAKLLRKRYREASDIVKKGKMCVLFINDLDAGAGRM 240
Query: 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 298
G TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+++NPRVPI+VTGNDFSTLYAPLIRD
Sbjct: 241 GSTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNPRVPIVVTGNDFSTLYAPLIRD 300
Query: 299 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 358
GRMEKFYWAPTR+DRIGVC GIFR DNV +D+V+LVDTFPGQSIDFFGALRARVYDDEV
Sbjct: 301 GRMEKFYWAPTRDDRIGVCQGIFRADNVHPDDVVRLVDTFPGQSIDFFGALRARVYDDEV 360
Query: 359 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
RKW++ GI+ IGK+L+NSKEGPPTFE+P MT++KLLEYG MLV EQ+NVKRVQLADKY+
Sbjct: 361 RKWVAGTGIQNIGKKLINSKEGPPTFEKPAMTIEKLLEYGNMLVGEQDNVKRVQLADKYM 420
Query: 419 SEAALGDANDDAIKNGSFYG 438
SEAALGDAN+D+IK G+FYG
Sbjct: 421 SEAALGDANEDSIKRGTFYG 440
>gi|116787538|gb|ABK24548.1| unknown [Picea sitchensis]
Length = 480
Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/440 (75%), Positives = 379/440 (86%), Gaps = 2/440 (0%)
Query: 1 MAAVVSTVGA--VNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVV 58
MA + VG+ V++ LPL +S VPS+ F G LKK S S + FKVV
Sbjct: 1 MATAAAAVGSITVSSNLPLSSGQASILKTVPSTGFFGCGLKKTSFNASHTFTKANHFKVV 60
Query: 59 SEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
+E DE KQT +D+W GLA+D SDDQ DI RGKG VD+LFQAPM SGTH VMS+YDYIS
Sbjct: 61 AEIDEGKQTDKDKWKGLAFDESDDQMDIRRGKGKVDSLFQAPMGSGTHNVVMSTYDYIST 120
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
R Y DNT+DG YIAP+FMDK++VHI+KNF+NLPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 121 AQRTYDFDNTMDGYYIAPSFMDKLLVHISKNFMNLPNIKVPLILGIWGGKGQGKSFQCEL 180
Query: 179 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 238
VFAK+GINPIMMSAGELESG+AGEPAKL+R+RYREA+DI+KKGKMC LFINDLDAGAGRM
Sbjct: 181 VFAKLGINPIMMSAGELESGDAGEPAKLLRKRYREASDIVKKGKMCVLFINDLDAGAGRM 240
Query: 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 298
G TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+++NPRVPI+VTGNDFSTLYAPLIRD
Sbjct: 241 GSTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNPRVPIVVTGNDFSTLYAPLIRD 300
Query: 299 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 358
GRMEKFYWAPTR+DRIGVC GIFR DNV +D+V+LVDTFPGQSIDFFGALRARVYDDEV
Sbjct: 301 GRMEKFYWAPTRDDRIGVCQGIFRADNVHPDDVVRLVDTFPGQSIDFFGALRARVYDDEV 360
Query: 359 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
RKW++ GI+ IGK+L+NSKEGPPTFE+P MT++KLLEYG MLV EQ+NVKRVQLADKY+
Sbjct: 361 RKWVAGTGIQNIGKKLINSKEGPPTFEKPAMTIEKLLEYGNMLVGEQDNVKRVQLADKYM 420
Query: 419 SEAALGDANDDAIKNGSFYG 438
SEAALGDAN+D+IK G+FYG
Sbjct: 421 SEAALGDANEDSIKRGTFYG 440
>gi|32481063|gb|AAP83928.1| Rubisco activase beta form precursor [Deschampsia antarctica]
Length = 428
Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/444 (77%), Positives = 379/444 (85%), Gaps = 25/444 (5%)
Query: 2 AAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKK-VSSKVSQQRILSKSFK---- 56
AA STVGA + P+S FLG LKK V+S V+ KSFK
Sbjct: 3 AAFSSTVGAP--------------ASTPTS-FLGNKLKKQVTSAVNYH---GKSFKANRF 44
Query: 57 --VVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYD 114
+ + DE KQT D+W GLAYDISDDQQDITRGKG+VD+LFQAPM GTH AV+SSY+
Sbjct: 45 TVMAKDIDEGKQTDGDKWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAVLSSYE 104
Query: 115 YISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSF 174
Y+SQGL++Y DNT+ G YIAPAFMDK+VVH++KNF+ LPN+K+PLILGIWGGKGQGKSF
Sbjct: 105 YVSQGLKKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSF 164
Query: 175 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234
QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAG
Sbjct: 165 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAG 224
Query: 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 294
AGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAP
Sbjct: 225 AGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAP 284
Query: 295 LIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVY 354
LIRDGRMEKFYWAPTREDRIGVC GIF+TDNV E +VK+VDTFPGQSIDFFGALRARVY
Sbjct: 285 LIRDGRMEKFYWAPTREDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVY 344
Query: 355 DDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLA 414
D EVRKW+S GIE IGKRLVNS++GP TFEQPKMT++KLLEYG MLVQEQ+NVKRVQLA
Sbjct: 345 DVEVRKWVSSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLA 404
Query: 415 DKYLSEAALGDANDDAIKNGSFYG 438
D Y+S+AALGDAN DA+K GSFYG
Sbjct: 405 DTYMSQAALGDANKDAMKTGSFYG 428
>gi|266893|sp|Q01587.1|RCA_CUCSA RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|18284|emb|CAA47906.1| rubisco activase [Cucumis sativus]
Length = 413
Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/413 (80%), Positives = 369/413 (89%), Gaps = 4/413 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MAA VST+GAVN +N S+ LVP+S FLG LK VSS+ + ++++ +FK+V+E
Sbjct: 1 MAATVSTIGAVNRT---TLNNSNYGGLVPNSAFLGSRLK-VSSRFTTSKMVTGNFKIVAE 56
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DEEKQT +D+W GLA+D SDDQQDITRGKG+ D LFQAPM +GTH AV+SSY+YIS GL
Sbjct: 57 QDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGL 116
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
R YS DN +DG YIAPAFMDK+ VHI KNFL LPN+KVPLILG+WGGKGQGKSFQCELVF
Sbjct: 117 RDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVF 176
Query: 181 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 240
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR+GG
Sbjct: 177 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGG 236
Query: 241 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 300
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 237 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 296
Query: 301 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360
M+KFYWAPTREDRIG+C+GIFRTD VP EDIVKLVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 297 MDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 356
Query: 361 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQL 413
W VG+ERIG+ LVNSKE PPTF+QPKMT++KLLEYG MLV EQENVKRV+L
Sbjct: 357 WAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409
>gi|32481061|gb|AAP83927.1| Rubisco activase alpha form precursor [Deschampsia antarctica]
Length = 465
Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 343/444 (77%), Positives = 378/444 (85%), Gaps = 25/444 (5%)
Query: 2 AAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKK-VSSKVSQQRILSKSFK---- 56
AA STVGA + P+S FLG LKK V+S V+ KSFK
Sbjct: 3 AAFSSTVGAP--------------ASTPTS-FLGNKLKKQVTSAVNYH---GKSFKANRF 44
Query: 57 --VVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYD 114
+ + DE KQT D+W GLAYDISDDQQDITRGKG+VD+LFQAPM GTH AV+SSY+
Sbjct: 45 TVMAKDIDEGKQTDGDKWKGLAYDISDDQQDITRGKGIVDSLFQAPMGDGTHEAVLSSYE 104
Query: 115 YISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSF 174
Y+SQGL++Y DNT+ G YIAPAFMDK+VVH++KNF+ LPN+K+PLILGIWGGKGQGKSF
Sbjct: 105 YVSQGLKKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQGKSF 164
Query: 175 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234
QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAG
Sbjct: 165 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAG 224
Query: 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 294
AGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPGMYN+EENPRVPI VTGNDFSTLYAP
Sbjct: 225 AGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIXVTGNDFSTLYAP 284
Query: 295 LIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVY 354
LI DGRMEKFYWAPTREDRIGVC GIF+TDNV E +VK+VDTFPGQSIDFFGALRARVY
Sbjct: 285 LIPDGRMEKFYWAPTREDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVY 344
Query: 355 DDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLA 414
DDEVRKW+S GIE IGKRLVNS++GP TFEQPKMT++KLLEYG MLVQEQ+NVKRVQLA
Sbjct: 345 DDEVRKWVSSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLA 404
Query: 415 DKYLSEAALGDANDDAIKNGSFYG 438
D Y+S+AALGDAN DA+K GSFYG
Sbjct: 405 DTYMSQAALGDANKDAMKTGSFYG 428
>gi|162458161|ref|NP_001104921.1| ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
precursor [Zea mays]
gi|29429152|sp|Q9ZT00.3|RCA_MAIZE RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|19855034|gb|AAC97932.3| ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor
[Zea mays]
gi|195620038|gb|ACG31849.1| ribulose bisphosphate carboxylase/oxygenase activase [Zea mays]
gi|313574198|dbj|BAJ41042.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase small
isoform [Zea mays]
gi|413920136|gb|AFW60068.1| ribulose bisphosphate carboxylase/oxygenase activase, Precursor
isoform 1 [Zea mays]
gi|413920137|gb|AFW60069.1| ribulose bisphosphate carboxylase/oxygenase activase, Precursor
isoform 2 [Zea mays]
Length = 433
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/414 (80%), Positives = 368/414 (88%), Gaps = 7/414 (1%)
Query: 31 SVFLGKSLKK--VSSKVSQQRILSKS---FKVVS--EYDEEKQTSQDRWAGLAYDISDDQ 83
S FLGK L K VS+ V+ S S FK ++ E DE KQT +DRW GLAYDISDDQ
Sbjct: 19 SSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQ 78
Query: 84 QDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVV 143
QDITRGKG+VD LFQAPM GTH AV+SSYDYISQG + Y+ DN +DG YIA FMDK+V
Sbjct: 79 QDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLV 138
Query: 144 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 203
VH++KNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGI PIMMSAGELESGNAGEP
Sbjct: 139 VHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEP 198
Query: 204 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 263
AKLIRQRYREA+D+IKKGKM CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT
Sbjct: 199 AKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 258
Query: 264 NVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRT 323
NVQLPGMYN+E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFRT
Sbjct: 259 NVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRT 318
Query: 324 DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPT 383
D V +E +V+LVDTFPGQSIDFFGALRARVYDDEVR+W+SE G+E I ++LVNSKEGPPT
Sbjct: 319 DGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPT 378
Query: 384 FEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFY 437
FEQPK+T++KLLEYG MLV EQENVKRVQLADKYL+EAALG+AN+DA+K GSF+
Sbjct: 379 FEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432
>gi|313574196|dbj|BAJ41041.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase small
isoform [Hordeum vulgare subsp. vulgare]
Length = 427
Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/409 (80%), Positives = 369/409 (90%), Gaps = 3/409 (0%)
Query: 33 FLGKSLKK-VSSKVSQQRILSKS--FKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRG 89
FLGK LKK V+S V+ SK+ F V++ + +++ + D+W GLAYDISDDQQDITRG
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRG 78
Query: 90 KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKN 149
KG+VD+LFQAP GTH AV+SSY+Y+SQGLR+Y DNT+ G YIAPAFMDK+VVH++KN
Sbjct: 79 KGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKN 138
Query: 150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 209
F+ LPN+K+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ
Sbjct: 139 FMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 198
Query: 210 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 269
RYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPG
Sbjct: 199 RYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 258
Query: 270 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 329
MYN+EENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E
Sbjct: 259 MYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDE 318
Query: 330 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 389
+VK+VDTFPGQSIDFFGALRARVYDDEVRKW+ GIE IGKRLVNS++GP TFEQPKM
Sbjct: 319 SVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKM 378
Query: 390 TLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
T++KLLEYG MLVQEQ+NVKRVQLAD Y+S+AALGDAN DA+K GSFYG
Sbjct: 379 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427
>gi|326494300|dbj|BAJ90419.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 427
Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/409 (80%), Positives = 369/409 (90%), Gaps = 3/409 (0%)
Query: 33 FLGKSLKK-VSSKVSQQRILSKS--FKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRG 89
FLGK LKK V+S V+ SK+ F V++ + +++ + D+W GLAYDISDDQQDITRG
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRG 78
Query: 90 KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKN 149
KG+VD+LFQAP GTH AV+SSY+Y+SQGLR+Y DNT+ G YIAPAFMDK+VVH++KN
Sbjct: 79 KGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKN 138
Query: 150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 209
F+ LPN+K+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ
Sbjct: 139 FMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 198
Query: 210 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 269
RYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPG
Sbjct: 199 RYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 258
Query: 270 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 329
MYN+EENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E
Sbjct: 259 MYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDE 318
Query: 330 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 389
+VK+VDTFPGQSIDFFGALRARVYDDEVRKW+ GIE IGKRLVNS++GP TFEQPKM
Sbjct: 319 SVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKM 378
Query: 390 TLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
T++KLLEYG MLVQEQ+NVKRVQLAD Y+S+AALGDAN DA+K GSFYG
Sbjct: 379 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427
>gi|170129|gb|AAA34038.1| rubisco activase precursor [Spinacia oleracea]
Length = 472
Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/438 (76%), Positives = 377/438 (86%), Gaps = 3/438 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MA VSTVGA A PL +NGSS + VP+S FLG SLKK ++ + S V +
Sbjct: 1 MATAVSTVGAATRA-PLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSSSRTTSMTVKAA 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
+EEK T D+WA LA D SDDQ DI RGKGMVD+LFQAP ++GTH + SS++Y SQGL
Sbjct: 60 ENEEKNT--DKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGL 117
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
R+Y +DN L LYIAPAFMDK+VVHITKNFLNLPN+K+PLILG+WGGKGQGKSFQCELVF
Sbjct: 118 RKYDIDNMLGDLYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVF 177
Query: 181 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 240
AK+GINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC LFINDL+ GAGRMGG
Sbjct: 178 AKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGG 237
Query: 241 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 300
TTQYTVNNQMVNATL+NIADNPTNVQLPGMYN+++N RVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 238 TTQYTVNNQMVNATLLNIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGR 297
Query: 301 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360
MEKFYWAPTREDRIGVC+GIF+TD VP E +VKLVD FPGQSIDFFGALRARVYDDEVRK
Sbjct: 298 MEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYDDEVRK 357
Query: 361 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 420
W++ VG++ +GK+LVNSK+GPP FEQP+MTL KL+EYG MLVQEQENVKRVQLAD+Y+S
Sbjct: 358 WVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSS 417
Query: 421 AALGDANDDAIKNGSFYG 438
AALGDAN DAI G+F+G
Sbjct: 418 AALGDANKDAIDRGTFFG 435
>gi|167096|gb|AAA63163.1| ribulose 1,5-bisphosphate carboxylase activase isoform 1 [Hordeum
vulgare subsp. vulgare]
Length = 427
Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/409 (80%), Positives = 368/409 (89%), Gaps = 3/409 (0%)
Query: 33 FLGKSLKK-VSSKVSQQRILSKS--FKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRG 89
FLGK LKK V+S V+ SK+ F V++ + +++ + D+W GLAYDISDDQQDITRG
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRG 78
Query: 90 KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKN 149
KG+VD+LFQAP GTH AV+SSY+Y+SQGLR+Y DNT+ G YIAPAFMDK+VVH++KN
Sbjct: 79 KGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKN 138
Query: 150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 209
F+ LPN+K+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ
Sbjct: 139 FMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 198
Query: 210 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 269
RYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPG
Sbjct: 199 RYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 258
Query: 270 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 329
MYN+ ENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E
Sbjct: 259 MYNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDE 318
Query: 330 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 389
+VK+VDTFPGQSIDFFGALRARVYDDEVRKW+ GIE IGKRLVNS++GP TFEQPKM
Sbjct: 319 SVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKM 378
Query: 390 TLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
T++KLLEYG MLVQEQ+NVKRVQLAD Y+S+AALGDAN DA+K GSFYG
Sbjct: 379 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427
>gi|410927436|gb|AFV93497.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
alpha1, partial [Gossypium barbadense]
Length = 371
Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/365 (89%), Positives = 349/365 (95%)
Query: 74 GLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLY 133
GLAYDISDDQQDITRGKGMVD+LFQAPM GTHYAVMSSY+YISQGL+ Y+LDN +DG Y
Sbjct: 1 GLAYDISDDQQDITRGKGMVDSLFQAPMNDGTHYAVMSSYEYISQGLKTYNLDNNMDGFY 60
Query: 134 IAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 193
IAPAFMDK+VVHI+KNF++LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG
Sbjct: 61 IAPAFMDKLVVHISKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 120
Query: 194 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 253
ELESGNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAGAGRMGGTTQYTVNNQMVNA
Sbjct: 121 ELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNA 180
Query: 254 TLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 313
TLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR
Sbjct: 181 TLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR 240
Query: 314 IGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKR 373
IGVC GIFRTD V EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVG+ +GK+
Sbjct: 241 IGVCKGIFRTDGVRDEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGVASVGKK 300
Query: 374 LVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKN 433
LVNS+EGPPTFEQPKMT++KLLEYG MLV EQENVKRVQLADKYLSEAALG+AN+D+I
Sbjct: 301 LVNSREGPPTFEQPKMTIEKLLEYGNMLVAEQENVKRVQLADKYLSEAALGEANEDSINR 360
Query: 434 GSFYG 438
G+FYG
Sbjct: 361 GTFYG 365
>gi|116283512|gb|AAH29790.1| Unknown (protein for MGC:35458) [Homo sapiens]
Length = 427
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 326/409 (79%), Positives = 370/409 (90%), Gaps = 3/409 (0%)
Query: 33 FLGKSLKK-VSSKVSQQRILSKS--FKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRG 89
FLGK LKK V+S V+ SK+ F V++ + +++ + D+W GLAYDISDDQQDITRG
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRG 78
Query: 90 KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKN 149
KG+VD+LFQAP GTH AV+SSY+Y+SQGL++Y DNT+ G YIAPAFMDK+VVH++KN
Sbjct: 79 KGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLKKYDFDNTMGGFYIAPAFMDKLVVHLSKN 138
Query: 150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 209
F+ LPN+K+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ
Sbjct: 139 FMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 198
Query: 210 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 269
RYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPG
Sbjct: 199 RYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 258
Query: 270 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 329
MYN+EENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E
Sbjct: 259 MYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDE 318
Query: 330 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 389
+VK+VDTFPGQSIDFFGALRARVYDDEVRKW++ GIE IGK+LVNS++GP TFEQPKM
Sbjct: 319 SVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVTSTGIENIGKKLVNSRDGPVTFEQPKM 378
Query: 390 TLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
T++KLLEYG MLVQEQ+NVKRVQLAD Y+S+AALGDAN DA+K G+FYG
Sbjct: 379 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGTFYG 427
>gi|12643756|sp|Q40073.1|RCAA_HORVU RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase
A, chloroplastic; Short=RA A; Short=RuBisCO activase A;
Flags: Precursor
gi|167097|gb|AAA63164.1| ribulose 1,5-bisphosphate carboxylase activase isoform 2 [Hordeum
vulgare subsp. vulgare]
Length = 464
Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/409 (80%), Positives = 368/409 (89%), Gaps = 3/409 (0%)
Query: 33 FLGKSLKK-VSSKVSQQRILSKS--FKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRG 89
FLGK LKK V+S V+ SK+ F V++ + +++ + D+W GLAYDISDDQQDITRG
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRG 78
Query: 90 KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKN 149
KG+VD+LFQAP GTH AV+SSY+Y+SQGLR+Y DNT+ G YIAPAFMDK+VVH++KN
Sbjct: 79 KGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKN 138
Query: 150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 209
F+ LPN+K+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ
Sbjct: 139 FMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 198
Query: 210 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 269
RYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPG
Sbjct: 199 RYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 258
Query: 270 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 329
MYN+ ENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E
Sbjct: 259 MYNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDE 318
Query: 330 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 389
+VK+VDTFPGQSIDFFGALRARVYDDEVRKW+ GIE IGKRLVNS++GP TFEQPKM
Sbjct: 319 SVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKM 378
Query: 390 TLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
T++KLLEYG MLVQEQ+NVKRVQLAD Y+S+AALGDAN DA+K GSFYG
Sbjct: 379 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427
>gi|445628|prf||1909374A RuBisCO activase
Length = 383
Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/376 (86%), Positives = 350/376 (93%)
Query: 62 DEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR 121
D +KQT DRW GL D SDDQQDITRGKGMVD+LFQAP +GTH+AV+ SY+Y+SQGLR
Sbjct: 6 DPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLR 65
Query: 122 QYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFA 181
QY+LDN LDG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 66 QYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFR 125
Query: 182 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGT 241
KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCLFINDLDAGAGRMGGT
Sbjct: 126 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGT 185
Query: 242 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM 301
TQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 186 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRM 245
Query: 302 EKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 361
EKFYWAPTREDRIGVC+GIFRTDNVP ED+VK+VD FPGQSIDFFGALRARVYDDEVRKW
Sbjct: 246 EKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKW 305
Query: 362 ISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEA 421
+S GIE+IG +L+NS +GPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLADKYL EA
Sbjct: 306 VSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEA 365
Query: 422 ALGDANDDAIKNGSFY 437
ALGDAN DAI NGSF+
Sbjct: 366 ALGDANADAINNGSFF 381
>gi|12643998|sp|P10871.2|RCA_SPIOL RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|4261546|gb|AAD13840.1|S45033_1 ribulosebisphosphate carboxylase/oxygenase activase [Spinacia
oleracea]
Length = 472
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/438 (75%), Positives = 375/438 (85%), Gaps = 3/438 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MA VSTVGA A PL +NGSS + VP+S FLG SLKK ++ + S V +
Sbjct: 1 MATAVSTVGAATRA-PLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSSSRTTSMTVKAA 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
+EEK T D+WA LA D SDDQ DI RGKGMVD+LFQAP ++GTH + SS++Y SQGL
Sbjct: 60 ENEEKNT--DKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGL 117
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
R+Y +DN L YIAPAFMDK+VVHITKNFLNLPN+K+PLILG+WGGKGQGKSFQCELVF
Sbjct: 118 RKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVF 177
Query: 181 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 240
AK+GINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC LFINDL+ GAGRMGG
Sbjct: 178 AKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGG 237
Query: 241 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 300
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+++N RVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 238 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGR 297
Query: 301 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360
MEKFYWAPTREDRIGVC+GIF+TD VP E +VKLVD FPGQSIDFFGALRARVY DEVRK
Sbjct: 298 MEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRK 357
Query: 361 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 420
W++ VG++ +GK+LVNSK+GPP FEQP+MTL KL+EYG MLVQEQENVKRVQLAD+Y+S
Sbjct: 358 WVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSS 417
Query: 421 AALGDANDDAIKNGSFYG 438
AALGDAN DAI G+F+G
Sbjct: 418 AALGDANKDAIDRGTFFG 435
>gi|410927466|gb|AFV93498.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
alpha 2, partial [Gossypium barbadense]
Length = 371
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/365 (88%), Positives = 350/365 (95%)
Query: 74 GLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLY 133
GLAYDISDDQQDITRGKGMVD+LFQAPM GTHYAVMSSY+Y+SQGL+ Y+LDN +DG Y
Sbjct: 1 GLAYDISDDQQDITRGKGMVDSLFQAPMNDGTHYAVMSSYEYLSQGLKTYNLDNNMDGFY 60
Query: 134 IAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 193
IAPAFMDK+VVHITKNF++LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG
Sbjct: 61 IAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 120
Query: 194 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 253
ELESGNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAGAGRMGGTTQYTVNNQMVNA
Sbjct: 121 ELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNA 180
Query: 254 TLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 313
TLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR
Sbjct: 181 TLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDR 240
Query: 314 IGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKR 373
+GVC GIFRTD +P EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS+VG+ +GK+
Sbjct: 241 VGVCKGIFRTDGIPDEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISDVGVAGVGKK 300
Query: 374 LVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKN 433
LVNS++GPPTFEQPKMT++KLLEYG MLV EQENVKRVQLADKYLSEAALG+AN+D+I
Sbjct: 301 LVNSRDGPPTFEQPKMTIEKLLEYGNMLVAEQENVKRVQLADKYLSEAALGEANEDSINR 360
Query: 434 GSFYG 438
G+FYG
Sbjct: 361 GTFYG 365
>gi|4261547|gb|AAD13841.1|S45033_11 rubisco activase [Spinacia oleracea]
Length = 435
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/438 (75%), Positives = 375/438 (85%), Gaps = 3/438 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MA VSTVGA A PL +NGSS + VP+S FLG SLKK ++ + S V +
Sbjct: 1 MATAVSTVGAATRA-PLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSSSRTTSMTVKAA 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
+EEK T D+WA LA D SDDQ DI RGKGMVD+LFQAP ++GTH + SS++Y SQGL
Sbjct: 60 ENEEKNT--DKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGL 117
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
R+Y +DN L YIAPAFMDK+VVHITKNFLNLPN+K+PLILG+WGGKGQGKSFQCELVF
Sbjct: 118 RKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVF 177
Query: 181 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 240
AK+GINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC LFINDL+ GAGRMGG
Sbjct: 178 AKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGG 237
Query: 241 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 300
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+++N RVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 238 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGR 297
Query: 301 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360
MEKFYWAPTREDRIGVC+GIF+TD VP E +VKLVD FPGQSIDFFGALRARVY DEVRK
Sbjct: 298 MEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRK 357
Query: 361 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 420
W++ VG++ +GK+LVNSK+GPP FEQP+MTL KL+EYG MLVQEQENVKRVQLAD+Y+S
Sbjct: 358 WVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSS 417
Query: 421 AALGDANDDAIKNGSFYG 438
AALGDAN DAI G+F+G
Sbjct: 418 AALGDANKDAIDRGTFFG 435
>gi|16471|emb|CAA32429.1| unnamed protein product [Arabidopsis thaliana]
Length = 473
Score = 695 bits (1794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/439 (77%), Positives = 377/439 (85%), Gaps = 4/439 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSL-VPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N A PL +NGS ++ P+S FLGK + VS + + SFKV++
Sbjct: 1 MAAAVSTVGAINRA-PLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E+KQT DRW GLAYD SDDQQDITRGKGMVD++FQAPM +GTH+AV+SSY+Y+SQG
Sbjct: 60 -VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQG 118
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LRQY+LDN +DG YIAPAFMDK+VVHITKNFL LPN+KVPLILG GGKGQGKSFQCELV
Sbjct: 119 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGSRGGKGQGKSFQCELV 178
Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239
AKMGINPIMMSAGELESGNAGE KLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 MAKMGINPIMMSAGELESGNAGEVRKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMG 238
Query: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 299
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPII TGNDFSTLY PLI DG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYGPLILDG 298
Query: 300 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 359
RMEKF PTREDRIGV GIFRTD + EDIV LVD FPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFLTGPTREDRIGVW-GIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVR 357
Query: 360 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 419
K++ +G+E+IGKRLVNS+EGPP FEQP+MT +KL+EYG MLV EQENVKRVQLA+ YLS
Sbjct: 358 KFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 417
Query: 420 EAALGDANDDAIKNGSFYG 438
+AALGDAN DAI G+FYG
Sbjct: 418 QAALGDANADAIGRGTFYG 436
>gi|100615|pir||C23703 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) A short
form precursor - barley
gi|167091|gb|AAA62702.1| ribulose 1,5-bisphosphate carboxylase activase [Hordeum vulgare
subsp. vulgare]
Length = 427
Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/409 (79%), Positives = 367/409 (89%), Gaps = 3/409 (0%)
Query: 33 FLGKSLKK-VSSKVSQQRILSKS--FKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRG 89
FLGK LKK V+S V+ SK+ F V++ + +++ + D+W GLA DISDDQQDITRG
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLATDISDDQQDITRG 78
Query: 90 KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKN 149
KG+VD+LFQAP GTH AV+SSY+Y+SQGLR+Y DNT+ G YIAPAFMDK+VVH++KN
Sbjct: 79 KGIVDSLFQAPTGDGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKN 138
Query: 150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 209
F+ LPN+K+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ
Sbjct: 139 FMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 198
Query: 210 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 269
RYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPG
Sbjct: 199 RYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 258
Query: 270 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 329
MYN+ ENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E
Sbjct: 259 MYNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVCDE 318
Query: 330 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 389
+VK+VDTFPGQSIDFFGALRARVYDDEVRKW+ GIE IGKRLVNS++GP TFEQPKM
Sbjct: 319 SVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKM 378
Query: 390 TLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
T++KLLEYG MLVQEQ+NVKRVQLAD Y+S+AALGDAN DA+K GSFYG
Sbjct: 379 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427
>gi|242072103|ref|XP_002451328.1| hypothetical protein SORBIDRAFT_05g027870 [Sorghum bicolor]
gi|241937171|gb|EES10316.1| hypothetical protein SORBIDRAFT_05g027870 [Sorghum bicolor]
Length = 440
Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/451 (74%), Positives = 377/451 (83%), Gaps = 29/451 (6%)
Query: 2 AAVVSTVGAVNNALPLKINGSSRFSLVPS-SVFLGKSLKK--VSSKVSQQRILSKS---- 54
AA STVGA + PS S FLGK L K VS+ + KS
Sbjct: 3 AAFSSTVGAP--------------ASTPSRSSFLGKKLSKQQVSAAAAVNYYHGKSSSSA 48
Query: 55 ------FKVVS--EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTH 106
FKV++ E DE KQ+ QDRW GLAYD+SDDQQDITRGKGM+D+LFQAPM GTH
Sbjct: 49 AANVNRFKVMAAKEVDETKQSDQDRWKGLAYDVSDDQQDITRGKGMIDSLFQAPMGDGTH 108
Query: 107 YAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWG 166
AV+SSYDYISQG + YS DN +DG YI+ +FMDK+VVH++KNF++LPN+KVPLILGIWG
Sbjct: 109 VAVLSSYDYISQGQKTYSFDNMMDGFYISKSFMDKLVVHLSKNFMSLPNIKVPLILGIWG 168
Query: 167 GKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL 226
GKGQGKSFQCELVF+KMGI PIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKM CL
Sbjct: 169 GKGQGKSFQCELVFSKMGIIPIMMSAGELESGNAGEPAKLIRQRYREAADLISKGKMSCL 228
Query: 227 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN 286
FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+ +N RVPIIVTGN
Sbjct: 229 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKVDNARVPIIVTGN 288
Query: 287 DFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFF 346
DFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFRTD V +E +V+LVDTFPGQSIDFF
Sbjct: 289 DFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFF 348
Query: 347 GALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQE 406
GALRARVYDDEVR+W++E G+E I K+LVNSKEGPPTFEQPKMT++KLLEYG MLV EQE
Sbjct: 349 GALRARVYDDEVRRWVAETGVENIAKKLVNSKEGPPTFEQPKMTIEKLLEYGHMLVAEQE 408
Query: 407 NVKRVQLADKYLSEAALGDANDDAIKNGSFY 437
NVKRVQLADKYL+EAALG AN+DA+K G+F+
Sbjct: 409 NVKRVQLADKYLNEAALGAANEDAMKTGNFF 439
>gi|223948607|gb|ACN28387.1| unknown [Zea mays]
Length = 383
Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/378 (84%), Positives = 350/378 (92%)
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E DE KQT +DRW GLAYDISDDQQDITRGKG+VD LFQAPM GTH AV+SSYDYISQG
Sbjct: 5 EVDETKQTDEDRWKGLAYDISDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQG 64
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
+ Y+ DN +DG YIA FMDK+VVH++KNF+ LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 65 QKSYNFDNMMDGFYIAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELV 124
Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239
FAKMGI PIMMSAGELESGNAGEPAKLIRQRYREA+D+IKKGKM CLFINDLDAGAGRMG
Sbjct: 125 FAKMGITPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMG 184
Query: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 299
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+NPRVPIIVTGNDFSTLYAPLIRDG
Sbjct: 185 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDG 244
Query: 300 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 359
RMEKFYWAPTREDRIGVC GIFRTD V +E +V+LVDTFPGQSIDFFGALRARVYDDEVR
Sbjct: 245 RMEKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVR 304
Query: 360 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 419
+W+SE G+E I ++LVNSKEGPPTFEQPK+T++KLLEYG MLV EQENVKRVQLADKYL+
Sbjct: 305 RWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLN 364
Query: 420 EAALGDANDDAIKNGSFY 437
EAALG+AN+DA+K GSF+
Sbjct: 365 EAALGEANEDAMKTGSFF 382
>gi|293331415|ref|NP_001168488.1| uncharacterized protein LOC100382265 [Zea mays]
gi|223948617|gb|ACN28392.1| unknown [Zea mays]
gi|413920135|gb|AFW60067.1| hypothetical protein ZEAMMB73_533261 [Zea mays]
Length = 463
Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/365 (87%), Positives = 342/365 (93%)
Query: 65 KQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYS 124
K+T QDRW GLA D SDDQQDITRGKG VD LFQAPM GTH AV+SSYDYISQGLR YS
Sbjct: 58 KETEQDRWRGLALDTSDDQQDITRGKGRVDPLFQAPMGDGTHVAVLSSYDYISQGLRHYS 117
Query: 125 LDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 184
LDN +DG YIAPAFMDK+VVHI KNF+ LPN+KVPLILGIWGGKGQGKSFQCELV AKMG
Sbjct: 118 LDNMMDGYYIAPAFMDKLVVHIAKNFMPLPNIKVPLILGIWGGKGQGKSFQCELVLAKMG 177
Query: 185 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQY 244
INPI+MSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMC LFINDLDAGAGRMGGTTQY
Sbjct: 178 INPIVMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCVLFINDLDAGAGRMGGTTQY 237
Query: 245 TVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 304
TVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRM+KF
Sbjct: 238 TVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMDKF 297
Query: 305 YWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISE 364
YWAPTREDR+GVC GIFR+D VP ED+V+LVD FPGQSIDFFGALRARVYDDEVR+W++E
Sbjct: 298 YWAPTREDRVGVCKGIFRSDGVPDEDVVRLVDAFPGQSIDFFGALRARVYDDEVRRWVAE 357
Query: 365 VGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALG 424
G+E I +RLVNSKEGPPTFEQP+MTLDKL+EYGRMLV+EQENVKRVQLADKYLSEAALG
Sbjct: 358 TGVENIARRLVNSKEGPPTFEQPRMTLDKLMEYGRMLVEEQENVKRVQLADKYLSEAALG 417
Query: 425 DANDD 429
DANDD
Sbjct: 418 DANDD 422
>gi|427542680|gb|AFY63117.1| alpha-form Rubisco activase [Zea mays]
Length = 463
Score = 685 bits (1767), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/365 (87%), Positives = 341/365 (93%)
Query: 65 KQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYS 124
K+T QDRW GLA D SDDQQDITRGKG VD LFQAPM GTH AV+SSYDYISQGLR YS
Sbjct: 58 KETEQDRWRGLALDTSDDQQDITRGKGRVDPLFQAPMGDGTHVAVLSSYDYISQGLRHYS 117
Query: 125 LDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 184
LDN +DG YIAPAFMDK+VVHI KNF+ LPN+KVPLILGIWGGKGQGKSFQCELV AKMG
Sbjct: 118 LDNMMDGYYIAPAFMDKLVVHIAKNFMPLPNIKVPLILGIWGGKGQGKSFQCELVLAKMG 177
Query: 185 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQY 244
INPI+MSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMC LFINDL AGAGRMGGTTQY
Sbjct: 178 INPIVMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCVLFINDLYAGAGRMGGTTQY 237
Query: 245 TVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 304
TVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRM+KF
Sbjct: 238 TVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMDKF 297
Query: 305 YWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISE 364
YWAPTREDR+GVC GIFR+D VP ED+V+LVD FPGQSIDFFGALRARVYDDEVR+W++E
Sbjct: 298 YWAPTREDRVGVCKGIFRSDGVPDEDVVRLVDAFPGQSIDFFGALRARVYDDEVRRWVAE 357
Query: 365 VGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALG 424
G+E I +RLVNSKEGPPTFEQP+MTLDKL+EYGRMLV+EQENVKRVQLADKYLSEAALG
Sbjct: 358 TGVENIARRLVNSKEGPPTFEQPRMTLDKLMEYGRMLVEEQENVKRVQLADKYLSEAALG 417
Query: 425 DANDD 429
DANDD
Sbjct: 418 DANDD 422
>gi|242072105|ref|XP_002451329.1| hypothetical protein SORBIDRAFT_05g027880 [Sorghum bicolor]
gi|241937172|gb|EES10317.1| hypothetical protein SORBIDRAFT_05g027880 [Sorghum bicolor]
Length = 473
Score = 682 bits (1760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/440 (75%), Positives = 372/440 (84%), Gaps = 18/440 (4%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS- 59
+A V+T A N+ L N +++ L SS+ KK + + I+ ++ V+
Sbjct: 12 VAVPVTTSTAANSFL--GSNNNNKQKLTVSSI----RKKKQHQQGGRGLIIIRAMAAVNK 65
Query: 60 -EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
E DE KQT QDRW GLAYD SDDQQDITRGKGM+D+LFQAPM GTH AV+SSYDYISQ
Sbjct: 66 QEVDETKQTEQDRWRGLAYDTSDDQQDITRGKGMIDSLFQAPMGDGTHVAVLSSYDYISQ 125
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
GLRQY NT+DG YIAPAFMDK+V+HI KNF+ LPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 126 GLRQY---NTMDGYYIAPAFMDKLVLHIAKNFMTLPNIKVPLILGIWGGKGQGKSFQCEL 182
Query: 179 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 238
VFAKMGINPI+MSAGELESGNAGEPAKLIRQRYREAAD+I KGKM CLFINDLDAGAGRM
Sbjct: 183 VFAKMGINPIVMSAGELESGNAGEPAKLIRQRYREAADLISKGKMSCLFINDLDAGAGRM 242
Query: 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 298
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY++ +NPRVPIIVTGNDFSTLYAPLIRD
Sbjct: 243 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYSKVDNPRVPIIVTGNDFSTLYAPLIRD 302
Query: 299 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 358
GRM+KFYWAPTR+DRIGVC GIFRTD VP E +V+LVD FPGQSIDFFGALRARVYDDEV
Sbjct: 303 GRMDKFYWAPTRDDRIGVCKGIFRTDGVPDEHVVQLVDAFPGQSIDFFGALRARVYDDEV 362
Query: 359 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
R+W++E G+E I +RLVNSKE PPTFEQP+MTLDKL+EYGRML +EQENVKRVQLADKYL
Sbjct: 363 RRWVAETGVENIARRLVNSKEAPPTFEQPRMTLDKLMEYGRMLEEEQENVKRVQLADKYL 422
Query: 419 SEAALGDANDDAIKNGSFYG 438
+EAALGDAND FYG
Sbjct: 423 TEAALGDAND-------FYG 435
>gi|100614|pir||B23703 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) A long form
precursor - barley (fragment)
gi|167089|gb|AAA62701.1| ribulose 1,5-bisphosphate carboxylase activase, partial [Hordeum
vulgare subsp. vulgare]
Length = 426
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/387 (81%), Positives = 353/387 (91%)
Query: 52 SKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMS 111
+ F V++ + +++ + D+W GLA DISDDQQDITRGKG+VD+LFQAP GTH AV+S
Sbjct: 3 ANRFTVMAAENIDEKRNTDKWKGLATDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLS 62
Query: 112 SYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQG 171
SY+Y+SQGLR+Y DNT+ G YIAPAFMDK+VVH++KNF+ LPN+K+PLILGIWGGKGQG
Sbjct: 63 SYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPLILGIWGGKGQG 122
Query: 172 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDL 231
KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDL
Sbjct: 123 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDL 182
Query: 232 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTL 291
DAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPGMYN+ ENPRVPI+VTGNDFSTL
Sbjct: 183 DAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKRENPRVPIVVTGNDFSTL 242
Query: 292 YAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRA 351
YAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E +VK+VDTFPGQSIDFFGALRA
Sbjct: 243 YAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVCDESVVKIVDTFPGQSIDFFGALRA 302
Query: 352 RVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRV 411
RVYDDEVRKW+ GIE IGKRLVNS++GP TFEQPKMT++KLLEYG MLVQEQ+NVKRV
Sbjct: 303 RVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRV 362
Query: 412 QLADKYLSEAALGDANDDAIKNGSFYG 438
QLAD Y+S+AALGDAN DA+K GSFYG
Sbjct: 363 QLADTYMSQAALGDANQDAMKTGSFYG 389
>gi|302803723|ref|XP_002983614.1| hypothetical protein SELMODRAFT_445595 [Selaginella moellendorffii]
gi|300148451|gb|EFJ15110.1| hypothetical protein SELMODRAFT_445595 [Selaginella moellendorffii]
Length = 440
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/444 (72%), Positives = 372/444 (83%), Gaps = 12/444 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKK-------VSSKVSQQRILSK 53
MA+ + V V A+ L SS +S FLG +LK+ +S + R++ +
Sbjct: 1 MASSLQAV-PVAQAVSLPAQKSSSKVACLNSQFLGLNLKRKNAFQASLSHAMGHSRVVCE 59
Query: 54 SFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSY 113
S S DE KQ+++DRW GLA DISDDQQDITRGKGMVDTL+Q M GT A+MSSY
Sbjct: 60 S---SSTEDETKQSAKDRWGGLATDISDDQQDITRGKGMVDTLYQGAMGMGTQTAIMSSY 116
Query: 114 DYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKS 173
+YIS R ++ DNT DG YIAPAFM+K+++HI KNF++LPN+KVPLILGIWGGKGQGKS
Sbjct: 117 EYISTAQRNFAFDNTKDGFYIAPAFMEKLMIHIAKNFMSLPNIKVPLILGIWGGKGQGKS 176
Query: 174 FQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLD 232
FQCELVF+K+G+NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK GKMCCLFINDLD
Sbjct: 177 FQCELVFSKLGVNPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLD 236
Query: 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292
AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG+YN+EE PRVPIIVTGNDFSTLY
Sbjct: 237 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGIYNKEEIPRVPIIVTGNDFSTLY 296
Query: 293 APLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRAR 352
APLIRDGRMEK+YWAPTREDRIGVC GIFRTD + ++D+VKLVD FPGQSIDFFGALRAR
Sbjct: 297 APLIRDGRMEKYYWAPTREDRIGVCKGIFRTDGIAEDDMVKLVDAFPGQSIDFFGALRAR 356
Query: 353 VYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQ 412
VYDDEVRKWI G+E IG +LVNS++GPPTF +P MT++KL+ YG MLV+EQENVKRVQ
Sbjct: 357 VYDDEVRKWIESTGVENIGSKLVNSRDGPPTFAKPAMTINKLMSYGYMLVKEQENVKRVQ 416
Query: 413 LADKYLSEAALGDANDDAIKNGSF 436
LA+KY+SEAALGDAN+DAIK G+F
Sbjct: 417 LAEKYMSEAALGDANEDAIKQGTF 440
>gi|118486993|gb|ABK95328.1| unknown [Populus trichocarpa]
Length = 361
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/361 (86%), Positives = 345/361 (95%), Gaps = 1/361 (0%)
Query: 79 ISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAF 138
+SDDQQDITRGKGMVD+LFQAP +GTH V+SSY+Y+SQGLR Y+LDN +DG YIAPAF
Sbjct: 1 MSDDQQDITRGKGMVDSLFQAPQGTGTHNPVLSSYEYLSQGLRTYNLDNMMDGFYIAPAF 60
Query: 139 MDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 198
MDK+VVHI+KNF++LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGI+PIMMSAGELESG
Sbjct: 61 MDKIVVHISKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGISPIMMSAGELESG 120
Query: 199 NAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN 257
NAGEPAKLIRQRYREAADIIKK GKMCCLFINDLDAGAGR+GGTTQYTVNNQMVNATLMN
Sbjct: 121 NAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMN 180
Query: 258 IADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC 317
IADNPTNVQLPGMYN+E+NPRVP+IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC
Sbjct: 181 IADNPTNVQLPGMYNKEDNPRVPVIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC 240
Query: 318 SGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNS 377
GIF+TDNVP++DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW+S VG+E IGK+LVNS
Sbjct: 241 IGIFKTDNVPEDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSGVGVESIGKKLVNS 300
Query: 378 KEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFY 437
+EGPPTFEQP MT++KL EYG MLV+EQENVKRVQLADKYLS+AALG+AN DAI+ G+FY
Sbjct: 301 REGPPTFEQPPMTVEKLFEYGNMLVKEQENVKRVQLADKYLSDAALGEANQDAIERGTFY 360
Query: 438 G 438
G
Sbjct: 361 G 361
>gi|302802165|ref|XP_002982838.1| hypothetical protein SELMODRAFT_268623 [Selaginella moellendorffii]
gi|300149428|gb|EFJ16083.1| hypothetical protein SELMODRAFT_268623 [Selaginella moellendorffii]
Length = 440
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/444 (72%), Positives = 371/444 (83%), Gaps = 12/444 (2%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKK-------VSSKVSQQRILSK 53
MA+ + V V A+ L SS +S FLG +LK+ +S + R++ +
Sbjct: 1 MASSLQAV-PVAQAVSLPAQKSSSKVACLNSQFLGLNLKRKNAFQASLSHAIGHSRVVCE 59
Query: 54 SFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSY 113
S S DE KQ+++DRW GLA DISDDQQDITRGKGMVDTL+Q + GT A+MSSY
Sbjct: 60 S---SSTEDETKQSAKDRWGGLATDISDDQQDITRGKGMVDTLYQGAIGMGTQNAIMSSY 116
Query: 114 DYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKS 173
+YIS R ++ DNT DG YIAPAFM+K+++HI KNF++LPN+KVPLILGIWGGKGQGKS
Sbjct: 117 EYISTAQRNFAFDNTKDGFYIAPAFMEKLMIHIAKNFMSLPNIKVPLILGIWGGKGQGKS 176
Query: 174 FQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLD 232
FQCELVF+K+G+NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK GKMCCLFINDLD
Sbjct: 177 FQCELVFSKLGVNPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKKGKMCCLFINDLD 236
Query: 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292
AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG+YN+EE PRVPIIVTGNDFSTLY
Sbjct: 237 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGIYNKEEIPRVPIIVTGNDFSTLY 296
Query: 293 APLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRAR 352
APLIRDGRMEK+YWAPTREDRIGVC GIFRTD + +D+V+LVD FPGQSIDFFGALRAR
Sbjct: 297 APLIRDGRMEKYYWAPTREDRIGVCKGIFRTDGISDDDMVRLVDAFPGQSIDFFGALRAR 356
Query: 353 VYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQ 412
VYDDEVRKWI G+E IG +LVNS++GPPTF +P MT++KL+ YG MLV+EQENVKRVQ
Sbjct: 357 VYDDEVRKWIESTGVENIGSKLVNSRDGPPTFAKPAMTINKLMSYGYMLVKEQENVKRVQ 416
Query: 413 LADKYLSEAALGDANDDAIKNGSF 436
LA+KY+SEAALGDAN+DAIK G+F
Sbjct: 417 LAEKYMSEAALGDANEDAIKQGTF 440
>gi|167999775|ref|XP_001752592.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696123|gb|EDQ82463.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 477
Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/433 (75%), Positives = 365/433 (84%), Gaps = 7/433 (1%)
Query: 6 STVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSEYDEEK 65
++V VN+ + G S VPSS FLG KV + + KS +VV+E + K
Sbjct: 11 ASVAQVNSGVAPSTVGKS---AVPSSAFLG-CKSKVPASAALGLAKGKS-RVVAEAESSK 65
Query: 66 QTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSL 125
+ DRWAGL DISDDQQDI RGKG+VD LFQ P GT AV+SS+DYISQG R YS+
Sbjct: 66 KV--DRWAGLGTDISDDQQDIQRGKGLVDALFQGPQGMGTQNAVLSSWDYISQGQRTYSM 123
Query: 126 DNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI 185
DN DGLYIAPAFMDK+V+HI KNF++LP +KVPLILGIWGGKGQGKSFQCELV +K+GI
Sbjct: 124 DNIKDGLYIAPAFMDKLVIHIAKNFMDLPGIKVPLILGIWGGKGQGKSFQCELVMSKLGI 183
Query: 186 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYT 245
NPI+MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAGAGRMGGTTQYT
Sbjct: 184 NPIVMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRMGGTTQYT 243
Query: 246 VNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 305
VNNQMVNATLMNIADNPTNVQLPG+YN+E PRVPIIVTGNDFSTLYAPLIRDGRMEKFY
Sbjct: 244 VNNQMVNATLMNIADNPTNVQLPGVYNKETIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 303
Query: 306 WAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV 365
WAPTREDRIGVC GIFR DNV +D+VKLVD FPGQSIDFFGALRARVYDDEVRKWI +V
Sbjct: 304 WAPTREDRIGVCKGIFRLDNVHDDDVVKLVDKFPGQSIDFFGALRARVYDDEVRKWIGKV 363
Query: 366 GIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGD 425
GIE IG+ LVNSK+GPPTF++P MT++KL+EYG MLVQEQ+NVKRVQLA++YLS ALGD
Sbjct: 364 GIENIGRNLVNSKDGPPTFQKPAMTIEKLMEYGDMLVQEQQNVKRVQLAEEYLSSDALGD 423
Query: 426 ANDDAIKNGSFYG 438
AN DAIK G+FYG
Sbjct: 424 ANADAIKQGTFYG 436
>gi|168047151|ref|XP_001776035.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672693|gb|EDQ59227.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 445
Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/412 (77%), Positives = 353/412 (85%), Gaps = 2/412 (0%)
Query: 26 SLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQD 85
S +P+S FLG KVS+ V+ KS +VV E + EK+ DRWAGL DISDDQQD
Sbjct: 27 STLPNSAFLG-CKSKVSANVTLGVAKGKS-RVVCEAEGEKKKKVDRWAGLGNDISDDQQD 84
Query: 86 ITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVH 145
I RGKGMVD LFQ + GT MSS+DY+S G R Y+ DN DGLYIAPAFMDK+++H
Sbjct: 85 IQRGKGMVDALFQGAVGLGTQVVTMSSWDYVSTGQRTYNFDNMKDGLYIAPAFMDKLIIH 144
Query: 146 ITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAK 205
I KNF+NLP +KVPLILGIWGGKGQGKSFQCELV AK+GINPI+MSAGELESGNAGEPAK
Sbjct: 145 IAKNFMNLPGIKVPLILGIWGGKGQGKSFQCELVMAKLGINPIVMSAGELESGNAGEPAK 204
Query: 206 LIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 265
LIRQRYREAAD+IKKGKMC LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD+PTNV
Sbjct: 205 LIRQRYREAADVIKKGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADSPTNV 264
Query: 266 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDN 325
QLPG+YN+EE PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DN
Sbjct: 265 QLPGVYNKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRLDN 324
Query: 326 VPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFE 385
V +++ KLVD FPGQSIDFFGALRARVYDDEVRKWI+ G+E IGK LVNSK GPPTFE
Sbjct: 325 VSDDNVTKLVDQFPGQSIDFFGALRARVYDDEVRKWIAGTGVENIGKNLVNSKNGPPTFE 384
Query: 386 QPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFY 437
+P MT++KL+EYG MLVQEQ+NVKRVQLA++YLS AALGDAN DAIK G+FY
Sbjct: 385 KPAMTIEKLMEYGEMLVQEQQNVKRVQLAEQYLSSAALGDANADAIKQGTFY 436
>gi|410927500|gb|AFV93501.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
alpha1, partial [Gossypium barbadense]
Length = 344
Score = 655 bits (1691), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/344 (88%), Positives = 328/344 (95%)
Query: 94 DTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNL 153
D+LFQAPM GTHYAVMSSY+YISQGL+ Y+LDN +DG YIAPAFMDK+VVHI+KNF++L
Sbjct: 1 DSLFQAPMNDGTHYAVMSSYEYISQGLKTYNLDNNMDGFYIAPAFMDKLVVHISKNFMSL 60
Query: 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYRE 213
PN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYRE
Sbjct: 61 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYRE 120
Query: 214 AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 273
AADIIKKGKMC LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+
Sbjct: 121 AADIIKKGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNK 180
Query: 274 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVK 333
EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIFRTD V EDIVK
Sbjct: 181 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFRTDGVRDEDIVK 240
Query: 334 LVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDK 393
LVDTFPGQSIDFFGALRARVYDDEVRKWISEVG+ +GK+LVNS+EGPPTFEQPKMT++K
Sbjct: 241 LVDTFPGQSIDFFGALRARVYDDEVRKWISEVGVASVGKKLVNSREGPPTFEQPKMTIEK 300
Query: 394 LLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFY 437
LLEYG MLV EQENVKRVQLADKYLSEAALG+AN+D+I G+FY
Sbjct: 301 LLEYGNMLVAEQENVKRVQLADKYLSEAALGEANEDSINRGTFY 344
>gi|410927512|gb|AFV93502.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
alpha 2, partial [Gossypium barbadense]
Length = 344
Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/344 (88%), Positives = 329/344 (95%)
Query: 94 DTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNL 153
D+LFQAPM GTHYAVMSSY+Y+SQGL+ Y+LDN +DG YIAPAFMDK+VVHITKNF++L
Sbjct: 1 DSLFQAPMNDGTHYAVMSSYEYLSQGLKTYNLDNNMDGFYIAPAFMDKLVVHITKNFMSL 60
Query: 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYRE 213
PN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYRE
Sbjct: 61 PNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYRE 120
Query: 214 AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 273
AADIIKKGKMC LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+
Sbjct: 121 AADIIKKGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNK 180
Query: 274 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVK 333
EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFRTD +P EDIVK
Sbjct: 181 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGIPDEDIVK 240
Query: 334 LVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDK 393
LVDTFPGQSIDFFGALRARVYDDEVRKWIS+VG+ +GK+LVNS++GPPTFEQPKMT++K
Sbjct: 241 LVDTFPGQSIDFFGALRARVYDDEVRKWISDVGVAGVGKKLVNSRDGPPTFEQPKMTIEK 300
Query: 394 LLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFY 437
LLEYG MLV EQENVKRVQLADKYLSEAALG+AN+D+I G+FY
Sbjct: 301 LLEYGNMLVAEQENVKRVQLADKYLSEAALGEANEDSINRGTFY 344
>gi|168054092|ref|XP_001779467.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669152|gb|EDQ55745.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 410
Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/403 (76%), Positives = 349/403 (86%), Gaps = 3/403 (0%)
Query: 38 LKKVSSKVSQQRILSKSFKVVSEYDE--EKQTSQDRWAGLAYDISDDQQDITRGKGMVDT 95
+ +VS+ V+ SKS +VV E ++ E DRWAGL DISDDQQDI RGKGMVD
Sbjct: 1 MSRVSANVTLGVASSKS-RVVCEAEKTGEPPKKVDRWAGLGNDISDDQQDIQRGKGMVDA 59
Query: 96 LFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPN 155
LFQ + GT MSS+DY+S G R Y+ DN DGLYIAPAFMDK+++HI KNF+NLP
Sbjct: 60 LFQGAVGLGTQVVTMSSWDYVSTGQRTYNFDNMKDGLYIAPAFMDKLIIHIAKNFMNLPG 119
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+KVPLILG+WGGKGQGKSFQCELV +K+GINPI+MSAGELESGNAGEPAKLIRQRYREAA
Sbjct: 120 IKVPLILGVWGGKGQGKSFQCELVMSKLGINPIVMSAGELESGNAGEPAKLIRQRYREAA 179
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D+IKKGKMC LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD+PTNVQLPG+YN+EE
Sbjct: 180 DVIKKGKMCALFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADSPTNVQLPGVYNKEE 239
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLV 335
PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DNV +++ KLV
Sbjct: 240 IPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRLDNVSDDNVTKLV 299
Query: 336 DTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLL 395
D+FPGQSIDFFGALRARVYDDEVRKWIS G++ IGK+LVNSK+GPPTFE+P MT++KL+
Sbjct: 300 DSFPGQSIDFFGALRARVYDDEVRKWISATGVDNIGKKLVNSKDGPPTFEKPAMTIEKLM 359
Query: 396 EYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
EYG MLVQEQ+NVKRVQLAD+YLS AALGDAN DAI G+FYG
Sbjct: 360 EYGNMLVQEQQNVKRVQLADQYLSSAALGDANADAISQGTFYG 402
>gi|168052682|ref|XP_001778769.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669888|gb|EDQ56467.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 471
Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 318/416 (76%), Positives = 349/416 (83%), Gaps = 9/416 (2%)
Query: 26 SLVPSSVFLGKSLKKVSSKVSQQRIL---SKSFKVVSEYDEEKQTSQDRWAGLAYDISDD 82
S VPSS F G SKVS L + +VV+E E +T DRWAGL DISDD
Sbjct: 20 STVPSSAFFG-----CKSKVSANGTLGIANGKSRVVAEA-ESSKTKVDRWAGLGNDISDD 73
Query: 83 QQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKV 142
QQDI RGKGMVD LFQ GT A+MSS+ Y+SQG R YS+DN DGLYIAPAFMDK+
Sbjct: 74 QQDIQRGKGMVDALFQGAQGLGTQNAIMSSWGYVSQGQRTYSMDNIKDGLYIAPAFMDKL 133
Query: 143 VVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 202
V+HI KNF+NLP +KVPLILGIWGGKGQGKSFQCELV +K+GINPI+MSAGELESGNAGE
Sbjct: 134 VIHIAKNFMNLPGIKVPLILGIWGGKGQGKSFQCELVMSKLGINPIVMSAGELESGNAGE 193
Query: 203 PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNP 262
PAKLIRQRYREAAD+IKKGKMC LFINDLDAG GRMGGTTQYTVNNQMVNATLMNIADNP
Sbjct: 194 PAKLIRQRYREAADVIKKGKMCALFINDLDAGTGRMGGTTQYTVNNQMVNATLMNIADNP 253
Query: 263 TNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFR 322
TNVQLP +YN+E PRVPIIVTGNDF TLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR
Sbjct: 254 TNVQLPSIYNKETIPRVPIIVTGNDFPTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR 313
Query: 323 TDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPP 382
DNV D+ KLVD FPGQSIDFFGALRARVYDDEVRKWI++VGIE IG+ LVNSK+GPP
Sbjct: 314 LDNVHDYDVAKLVDQFPGQSIDFFGALRARVYDDEVRKWIAKVGIENIGRNLVNSKDGPP 373
Query: 383 TFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
TF++P MT+DKL+EYG +LVQEQ+NVKRVQLADKYLS AL DAN DAI+ G+FYG
Sbjct: 374 TFQKPAMTIDKLMEYGNLLVQEQQNVKRVQLADKYLSSDALVDANADAIQQGTFYG 429
>gi|302780018|ref|XP_002971784.1| hypothetical protein SELMODRAFT_95817 [Selaginella moellendorffii]
gi|300160916|gb|EFJ27533.1| hypothetical protein SELMODRAFT_95817 [Selaginella moellendorffii]
Length = 451
Score = 649 bits (1675), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/380 (80%), Positives = 339/380 (89%), Gaps = 1/380 (0%)
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
+ DE Q+ DRW GL D SDDQQDITRGKGMVD+L+Q P GT AVMSS +Y++
Sbjct: 1 QVDESSQSKTDRWQGLGTDTSDDQQDITRGKGMVDSLYQGPQGGGTQTAVMSSLEYLNTA 60
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
R YS+DNT+DGLYIAPAFMDK+V+HI+KNF+ LPN+KVPLILG+WGGKGQGKSFQCELV
Sbjct: 61 QRVYSMDNTIDGLYIAPAFMDKLVIHISKNFMALPNIKVPLILGVWGGKGQGKSFQCELV 120
Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGRM 238
F+K+GINPI MSAGELESGNAGEPAKLIRQRYREAADIIKK G+MC LFINDLDAGAGRM
Sbjct: 121 FSKLGINPIAMSAGELESGNAGEPAKLIRQRYREAADIIKKKGQMCVLFINDLDAGAGRM 180
Query: 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 298
GGTTQYTVNNQMVNATLMNIADNPTNVQLPG+Y +EE PRVPIIVTGNDFSTLYAPLIRD
Sbjct: 181 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGIYTKEELPRVPIIVTGNDFSTLYAPLIRD 240
Query: 299 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 358
GRMEKFYWAPTREDRIGVC GIFRTD+VP EDIVKLVDTFPGQSIDFFGALRARVYDDEV
Sbjct: 241 GRMEKFYWAPTREDRIGVCKGIFRTDDVPDEDIVKLVDTFPGQSIDFFGALRARVYDDEV 300
Query: 359 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
RKWI++VG+E IG +LVNSK+GPPTF +P MT+DKLLEYG MLVQEQENVKR LADKY+
Sbjct: 301 RKWITQVGVENIGPKLVNSKDGPPTFPKPPMTIDKLLEYGNMLVQEQENVKRYHLADKYM 360
Query: 419 SEAALGDANDDAIKNGSFYG 438
++LGDAN+D + +FYG
Sbjct: 361 KGSSLGDANEDEREKDTFYG 380
>gi|3687652|gb|AAC62207.1| rubisco activase precursor [Datisca glomerata]
Length = 373
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/373 (81%), Positives = 341/373 (91%), Gaps = 2/373 (0%)
Query: 2 AAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSEY 61
++ VST+GAVN + PL +N + L+P++ F G SLKK++S+++ RI + + K V++
Sbjct: 3 SSAVSTIGAVNRS-PLNLNNNGTGGLLPNTAFFGSSLKKMNSRLTNPRIAAGNIKAVADD 61
Query: 62 DEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR 121
DEEKQTS+DRW GLA+D SDDQQDITRGKGMVD+LFQAPM++GTHYAVMSSY+Y+S GLR
Sbjct: 62 DEEKQTSKDRWGGLAFDTSDDQQDITRGKGMVDSLFQAPMQTGTHYAVMSSYEYLSTGLR 121
Query: 122 QYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFA 181
QY LDN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFA
Sbjct: 122 QY-LDNNMDGFYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFA 180
Query: 182 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGT 241
KMGINPIMMSAGELESGNAGEPAKLIRQR REAADIIKKGKM CLFINDLDAGAGR+GGT
Sbjct: 181 KMGINPIMMSAGELESGNAGEPAKLIRQRCREAADIIKKGKMSCLFINDLDAGAGRLGGT 240
Query: 242 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM 301
TQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 241 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRM 300
Query: 302 EKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 361
EKFYWAPTREDRIGVC+GIFR+DNV KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW
Sbjct: 301 EKFYWAPTREDRIGVCTGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 360
Query: 362 ISEVGIERIGKRL 374
IS VG++ +GK L
Sbjct: 361 ISGVGVQDVGKSL 373
>gi|13430334|gb|AAK25799.1|AF338238_1 rubisco activase [Zantedeschia aethiopica]
Length = 334
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/334 (89%), Positives = 324/334 (97%)
Query: 105 THYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGI 164
TH V+SSY+YIS GLR ++LDNT++GLYIAPAFMDK+VVHITKNF+NLPN+K+PLILGI
Sbjct: 1 THNPVLSSYEYISTGLRSFNLDNTVNGLYIAPAFMDKLVVHITKNFMNLPNIKIPLILGI 60
Query: 165 WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC 224
WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMC
Sbjct: 61 WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMC 120
Query: 225 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVT 284
CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++ENPRVPIIVT
Sbjct: 121 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENPRVPIIVT 180
Query: 285 GNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSID 344
GNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC+GIFR+DNVPKED++KLVDTFPGQSID
Sbjct: 181 GNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCTGIFRSDNVPKEDVIKLVDTFPGQSID 240
Query: 345 FFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQE 404
FFGALRARVYDDEVRKWI+E+G++ +GKRLVNS EGPPTF QPKMTLDKLLEYG MLVQE
Sbjct: 241 FFGALRARVYDDEVRKWIAEIGVDGVGKRLVNSLEGPPTFAQPKMTLDKLLEYGNMLVQE 300
Query: 405 QENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
QENVKRVQLADKYLSEAALGDAN DAIK GSFYG
Sbjct: 301 QENVKRVQLADKYLSEAALGDANQDAIKTGSFYG 334
>gi|302760819|ref|XP_002963832.1| hypothetical protein SELMODRAFT_79425 [Selaginella moellendorffii]
gi|300169100|gb|EFJ35703.1| hypothetical protein SELMODRAFT_79425 [Selaginella moellendorffii]
Length = 451
Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 303/380 (79%), Positives = 338/380 (88%), Gaps = 1/380 (0%)
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
+ DE Q+ DRW GL D SDDQQDITRGKGMVD+L+Q P GT AVMSS +Y++
Sbjct: 1 QVDESSQSKTDRWQGLGTDTSDDQQDITRGKGMVDSLYQGPQGGGTQTAVMSSLEYLNTA 60
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
R YS+DNT+DGLYIAPAFMDK+V+HI+KNF+ LPN+KVPLILG+WGGKGQGKSFQCELV
Sbjct: 61 QRVYSMDNTIDGLYIAPAFMDKLVIHISKNFMALPNIKVPLILGVWGGKGQGKSFQCELV 120
Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGRM 238
F+K+GINPI MSAGELESGNAGEPAKLIRQRYREAADIIKK G+MC LFINDLDAGAGRM
Sbjct: 121 FSKLGINPIAMSAGELESGNAGEPAKLIRQRYREAADIIKKKGQMCVLFINDLDAGAGRM 180
Query: 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 298
GGTTQYTVNNQMVNATLMNIADNPTNVQLPG+Y +EE PRVPIIVTGNDFSTLYAPLIRD
Sbjct: 181 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGIYTKEELPRVPIIVTGNDFSTLYAPLIRD 240
Query: 299 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 358
GRMEKFYWAPTREDRIGVC GIFR+D VP EDIVKLVDTFPGQSIDFFGALRARVYDDEV
Sbjct: 241 GRMEKFYWAPTREDRIGVCKGIFRSDEVPDEDIVKLVDTFPGQSIDFFGALRARVYDDEV 300
Query: 359 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
RKWI++VG+E IG +LVNSK+GPPTF +P MT+DKLLEYG MLV+EQENVKR LADKY+
Sbjct: 301 RKWITQVGVENIGPKLVNSKDGPPTFPKPPMTIDKLLEYGNMLVKEQENVKRYHLADKYM 360
Query: 419 SEAALGDANDDAIKNGSFYG 438
++LGDAN+D + +FYG
Sbjct: 361 KGSSLGDANEDEREKDTFYG 380
>gi|168047149|ref|XP_001776034.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672692|gb|EDQ59226.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 455
Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust.
Identities = 312/455 (68%), Positives = 355/455 (78%), Gaps = 24/455 (5%)
Query: 2 AAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSEY 61
AV+ ++ + +S+ S +PSS G S KVS V+ KS +VV E
Sbjct: 5 CAVMQSIAVAKVQASVSAQATSK-STLPSSALFGCS-SKVSVNVTLGVAKGKS-RVVCEA 61
Query: 62 DEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR 121
+ EK+ DRWAGL DISDDQQDI RGKGMVD LFQ GT MSS+DY+S R
Sbjct: 62 EGEKKKV-DRWAGLGNDISDDQQDIQRGKGMVDALFQGATGLGTQVVTMSSWDYVSTAQR 120
Query: 122 QYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFA 181
Y+ DNT DGLYIAPAFMDK+V+H+ KNF+NLP +KVPLILG+WGGKGQGKSFQ ELV
Sbjct: 121 TYNFDNTSDGLYIAPAFMDKLVIHVCKNFMNLPGIKVPLILGVWGGKGQGKSFQSELVMK 180
Query: 182 KMGIN--------------------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 221
K+GIN PIMMSAGELESGNAGEPAKLIRQRYREAA II+KG
Sbjct: 181 KLGINSGRGLLSSLVTLSFEISMCHPIMMSAGELESGNAGEPAKLIRQRYREAAAIIQKG 240
Query: 222 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 281
KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD+PTNVQLPG+YN+EE PRVPI
Sbjct: 241 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADSPTNVQLPGVYNKEEIPRVPI 300
Query: 282 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQ 341
IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DN+ +++ K+VD FPGQ
Sbjct: 301 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRLDNISDDNVTKMVDMFPGQ 360
Query: 342 SIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRML 401
SIDFFGALRARVYDDEVR WIS G+E +GK LVNSK+GPP F++P MT++KL+EYG+ML
Sbjct: 361 SIDFFGALRARVYDDEVRNWISATGVENLGKNLVNSKDGPPEFKKPAMTIEKLMEYGQML 420
Query: 402 VQEQENVKRVQLADKYLSEAALGDANDDAIKNGSF 436
VQEQ+NVKRVQLA++YL+ AALGDAN DAIK G F
Sbjct: 421 VQEQQNVKRVQLAEQYLNSAALGDANADAIKQGKF 455
>gi|108864712|gb|ABG22613.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
Length = 348
Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust.
Identities = 292/331 (88%), Positives = 317/331 (95%)
Query: 108 AVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 167
AV+SSY+Y+SQGLR Y DNT+ G YIAPAFMDK+VVHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 13 AVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGG 72
Query: 168 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF
Sbjct: 73 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 132
Query: 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 287
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+NPRVPIIVTGND
Sbjct: 133 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGND 192
Query: 288 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFG 347
FSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFRTDNVP EDIVK+VD+FPGQSIDFFG
Sbjct: 193 FSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFG 252
Query: 348 ALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQEN 407
ALRARVYDDEVRKW+S+ G+E IGKRLVNS+EGPP FEQPKMT++KL+EYG MLV+EQEN
Sbjct: 253 ALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQEN 312
Query: 408 VKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
VKRVQLA++YLSEAALGDAN DA+K GSFYG
Sbjct: 313 VKRVQLAEQYLSEAALGDANSDAMKTGSFYG 343
>gi|62733168|gb|AAX95285.1| RuBisCO activase small isoform precursor [Oryza sativa Japonica
Group]
gi|108864711|gb|ABG22612.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative, expressed [Oryza sativa Japonica
Group]
Length = 357
Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust.
Identities = 292/331 (88%), Positives = 317/331 (95%)
Query: 108 AVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 167
AV+SSY+Y+SQGLR Y DNT+ G YIAPAFMDK+VVHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 22 AVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGG 81
Query: 168 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF
Sbjct: 82 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 141
Query: 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 287
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+NPRVPIIVTGND
Sbjct: 142 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGND 201
Query: 288 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFG 347
FSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFRTDNVP EDIVK+VD+FPGQSIDFFG
Sbjct: 202 FSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFG 261
Query: 348 ALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQEN 407
ALRARVYDDEVRKW+S+ G+E IGKRLVNS+EGPP FEQPKMT++KL+EYG MLV+EQEN
Sbjct: 262 ALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQEN 321
Query: 408 VKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
VKRVQLA++YLSEAALGDAN DA+K GSFYG
Sbjct: 322 VKRVQLAEQYLSEAALGDANSDAMKTGSFYG 352
>gi|297612474|ref|NP_001068555.2| Os11g0707000 [Oryza sativa Japonica Group]
gi|255680411|dbj|BAF28918.2| Os11g0707000 [Oryza sativa Japonica Group]
Length = 350
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 287/324 (88%), Positives = 310/324 (95%)
Query: 115 YISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSF 174
Y+SQGLR Y DNT+ G YIAPAFMDK+VVHI+KNF+ LPN+KVPLILGIWGGKGQGKSF
Sbjct: 22 YLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISKNFMTLPNIKVPLILGIWGGKGQGKSF 81
Query: 175 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234
QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG
Sbjct: 82 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 141
Query: 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 294
AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+NPRVPIIVTGNDFSTLYAP
Sbjct: 142 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAP 201
Query: 295 LIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVY 354
LIRDGRMEKFYWAPTR+DR+GVC GIFRTDNVP EDIVK+VD+FPGQSIDFFGALRARVY
Sbjct: 202 LIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVY 261
Query: 355 DDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLA 414
DDEVRKW+S+ G+E IGKRLVNS+EGPP FEQPKMT++KL+EYG MLV+EQENVKRVQLA
Sbjct: 262 DDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLA 321
Query: 415 DKYLSEAALGDANDDAIKNGSFYG 438
++YLSEAALGDAN DA+K GSFYG
Sbjct: 322 EQYLSEAALGDANSDAMKTGSFYG 345
>gi|115392208|gb|ABI96906.1| chloroplast ribulose-1,5-bisphosphate carboxylase activase
[Triticum aestivum]
Length = 360
Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust.
Identities = 284/351 (80%), Positives = 321/351 (91%)
Query: 52 SKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMS 111
+ F V++ + +++ + D+W GLAYDISDDQQDITRGKG+VD+LFQAP GTH AV+S
Sbjct: 10 ANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRGKGIVDSLFQAPTGDGTHEAVLS 69
Query: 112 SYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQG 171
SY+Y+SQGL++Y DNT+ G YIAPAFMDK+VVH++KNF+ LPN+K+P ILGIWGGKGQG
Sbjct: 70 SYEYVSQGLKKYDFDNTMGGFYIAPAFMDKLVVHLSKNFMTLPNIKIPRILGIWGGKGQG 129
Query: 172 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDL 231
KSFQCELVFAKMGINPIM+SAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDL
Sbjct: 130 KSFQCELVFAKMGINPIMLSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDL 189
Query: 232 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTL 291
DAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPGMYN+EENPRVPI+VTGNDFSTL
Sbjct: 190 DAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTL 249
Query: 292 YAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRA 351
YAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E +VK+VDTFPGQSIDFFGALRA
Sbjct: 250 YAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRA 309
Query: 352 RVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLV 402
RV DDEVRKW++ GIE IGKRLVNS++GP TFEQPKMT++KLLEYG MLV
Sbjct: 310 RVNDDEVRKWVTSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLV 360
>gi|312064704|gb|ADQ27442.1| chloroplast Rubisco activase [Solanum tuberosum]
Length = 359
Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust.
Identities = 279/360 (77%), Positives = 320/360 (88%), Gaps = 3/360 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSK-VSQQRILSKSFKVVS 59
MAA VST+GA + A PL +N S + VPS+ F GKSLK+V +K +S ++ +++ ++V+
Sbjct: 1 MAATVSTIGAASKA-PLSLNNSVAGTSVPSTAFFGKSLKRVYAKGISSPKVSNRNLRIVA 59
Query: 60 -EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
E DE K+T +DRW GL + SDDQQDI RGKGMVD+LFQAP +GTH+A+M+SY+Y+SQ
Sbjct: 60 QEIDESKETKEDRWKGLYENASDDQQDIARGKGMVDSLFQAPTGTGTHHAIMNSYEYVSQ 119
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
L+ Y +DN LDG YIAP+FMDK+ VHITKNFL+LPN+KVPLILG+WGGKGQGKSFQCEL
Sbjct: 120 ALKTYQMDNKLDGFYIAPSFMDKLAVHITKNFLSLPNIKVPLILGVWGGKGQGKSFQCEL 179
Query: 179 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 238
VF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCLFINDLDAGAGRM
Sbjct: 180 VFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRM 239
Query: 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 298
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLIRD
Sbjct: 240 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENCRVPIIVTGNDFSTLYAPLIRD 299
Query: 299 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 358
GRMEKFYWAPTREDRIGVC GIFRTDNVP+E +VK+VD+FPGQSIDFFGALRARVYDDEV
Sbjct: 300 GRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEV 359
>gi|224284512|gb|ACN39989.1| unknown [Picea sitchensis]
Length = 368
Score = 596 bits (1536), Expect = e-168, Method: Compositional matrix adjust.
Identities = 274/331 (82%), Positives = 306/331 (92%)
Query: 85 DITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVV 144
DI RGKG VD+LFQAPM SGTH VMS+YDYIS R Y DNT+DG YIAP+FMDK++V
Sbjct: 2 DIRRGKGKVDSLFQAPMGSGTHNVVMSTYDYISTAQRTYDFDNTMDGYYIAPSFMDKLLV 61
Query: 145 HITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA 204
HI+KNF+NLPN+KVPLILGIWGGKGQGKSFQCELVFAK+GINPIMMSAGELESG+AGEPA
Sbjct: 62 HISKNFMNLPNIKVPLILGIWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGDAGEPA 121
Query: 205 KLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTN 264
KL+R+RYREA+DI+KKGKMC LFINDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPTN
Sbjct: 122 KLLRKRYREASDIVKKGKMCVLFINDLDAGAGRMGSTTQYTVNNQMVNATLMNIADNPTN 181
Query: 265 VQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTD 324
VQLPGMYN+++NPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIFR D
Sbjct: 182 VQLPGMYNKQDNPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCQGIFRAD 241
Query: 325 NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTF 384
NV +D+V+LVDTFPGQSIDFFGALRARVYDDEVRKW++ GI+ IGK+L+NSKEGPPTF
Sbjct: 242 NVHPDDVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVAGTGIQNIGKKLINSKEGPPTF 301
Query: 385 EQPKMTLDKLLEYGRMLVQEQENVKRVQLAD 415
E+P MT++KLLEYG MLV EQ+NVKRVQL D
Sbjct: 302 EKPAMTIEKLLEYGNMLVGEQDNVKRVQLVD 332
>gi|410927414|gb|AFV93495.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
beta1, partial [Gossypium barbadense]
Length = 296
Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust.
Identities = 274/294 (93%), Positives = 285/294 (96%)
Query: 74 GLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLY 133
GLAYDISDDQQDITRGKGMVD+LFQAPM GTHYAVMSSY+YISQGLR Y LDN +DG Y
Sbjct: 1 GLAYDISDDQQDITRGKGMVDSLFQAPMNDGTHYAVMSSYEYISQGLRTYDLDNNMDGFY 60
Query: 134 IAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 193
IAPAFMDK+VVHITKN++ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG
Sbjct: 61 IAPAFMDKLVVHITKNYMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 120
Query: 194 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 253
ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA
Sbjct: 121 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 180
Query: 254 TLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 313
TLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR
Sbjct: 181 TLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 240
Query: 314 IGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGI 367
IGVC+GIFRTDNVP +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI EVG+
Sbjct: 241 IGVCTGIFRTDNVPVDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIGEVGV 294
>gi|410927420|gb|AFV93496.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
beta2, partial [Gossypium barbadense]
Length = 296
Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust.
Identities = 272/294 (92%), Positives = 285/294 (96%)
Query: 74 GLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLY 133
GLAYDISDDQQDITRGKGMVD+LFQAPM GTHYAVMSSY+Y+SQGLR Y LDN +DG Y
Sbjct: 1 GLAYDISDDQQDITRGKGMVDSLFQAPMNDGTHYAVMSSYEYLSQGLRTYDLDNNMDGFY 60
Query: 134 IAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 193
IAPAFMDK+VVHITKNF+ LPN+KVPLILG+WGGKGQGKSFQCELVFAKMGINPIMMSAG
Sbjct: 61 IAPAFMDKLVVHITKNFMTLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAG 120
Query: 194 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 253
ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA
Sbjct: 121 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 180
Query: 254 TLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 313
TLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR
Sbjct: 181 TLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 240
Query: 314 IGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGI 367
IGVC+GIFRTDNVP +D+VKLVDTFPGQSIDFFGALRARVYDDEVRKWI EVG+
Sbjct: 241 IGVCTGIFRTDNVPVDDLVKLVDTFPGQSIDFFGALRARVYDDEVRKWIGEVGV 294
>gi|116789808|gb|ABK25395.1| unknown [Picea sitchensis]
Length = 310
Score = 572 bits (1475), Expect = e-160, Method: Compositional matrix adjust.
Identities = 261/310 (84%), Positives = 296/310 (95%)
Query: 129 LDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPI 188
+DG YIAP+FMDK++VHI+KNF+NLPN+KVPLILGIWGGKGQGKSFQCELVFAK+GINPI
Sbjct: 1 MDGYYIAPSFMDKLLVHISKNFMNLPNIKVPLILGIWGGKGQGKSFQCELVFAKLGINPI 60
Query: 189 MMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNN 248
MMSAGELESG+AGEPAKL+R+RYREA+DI+KKGKMC LFINDLDAGAGRMG TTQYTVNN
Sbjct: 61 MMSAGELESGDAGEPAKLLRKRYREASDIVKKGKMCVLFINDLDAGAGRMGSTTQYTVNN 120
Query: 249 QMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
QMVNATLMNIADNPTNVQLPGMYN+++NPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAP
Sbjct: 121 QMVNATLMNIADNPTNVQLPGMYNRQDNPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAP 180
Query: 309 TREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIE 368
TR+DRIGVC GIFR DNV +D+V+LVDTFPGQSIDFFGALRARVYDDEVRKW++ GI+
Sbjct: 181 TRDDRIGVCQGIFRADNVHPDDVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVAGTGIQ 240
Query: 369 RIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDAND 428
IGK+L+NSKEGPPTFE+P MT++KLLEYG MLV EQ+NVKR+QLADKY+SEAALGDAN+
Sbjct: 241 NIGKKLINSKEGPPTFEKPAMTIEKLLEYGNMLVGEQDNVKRLQLADKYMSEAALGDANE 300
Query: 429 DAIKNGSFYG 438
D+IK G+FYG
Sbjct: 301 DSIKRGTFYG 310
>gi|308368980|gb|AAG22094.3| ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor
[Zea mays]
Length = 305
Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust.
Identities = 264/304 (86%), Positives = 289/304 (95%)
Query: 134 IAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 193
IA FMDK+VVH++KNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGI PIMMSAG
Sbjct: 1 IAKGFMDKLVVHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAG 60
Query: 194 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 253
ELESGNAGEPAKLIRQRYREA+D+IKKGKM CLFINDLDAGAGRMGGTTQYTVNNQMVNA
Sbjct: 61 ELESGNAGEPAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNA 120
Query: 254 TLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 313
TLMNIADNPTNVQLPGMYN+E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR
Sbjct: 121 TLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 180
Query: 314 IGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKR 373
IGVC GIFRTD V +E +V+LVDTFPGQSIDFFGALRARVYDDEVR+W+SE G+E I ++
Sbjct: 181 IGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARK 240
Query: 374 LVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKN 433
LVNSKEGPPTFEQPK+T++KLLEYG MLV EQENVKRVQLADKYL+EAALG+AN+DA+K
Sbjct: 241 LVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKT 300
Query: 434 GSFY 437
GSF+
Sbjct: 301 GSFF 304
>gi|356624532|pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
gi|356624733|pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624734|pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624735|pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624736|pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624737|pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
gi|356624738|pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 263/293 (89%), Positives = 280/293 (95%)
Query: 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM 183
+LDN LDG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELVF KM
Sbjct: 1 NLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKM 60
Query: 184 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQ 243
GINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCLFINDLDAGAGRMGGTTQ
Sbjct: 61 GINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQ 120
Query: 244 YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 303
YTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLIRDGRMEK
Sbjct: 121 YTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEK 180
Query: 304 FYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 363
FYWAPTREDRIGVC+GIFRTDNVP ED+VK+VD FPGQSIDFFGALRARVYDDEVRKW+S
Sbjct: 181 FYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVS 240
Query: 364 EVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 416
GIE+IG +L+NS +GPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLADK
Sbjct: 241 GTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADK 293
>gi|384253108|gb|EIE26583.1| Rubisco activase [Coccomyxa subellipsoidea C-169]
Length = 421
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 267/403 (66%), Positives = 323/403 (80%), Gaps = 8/403 (1%)
Query: 26 SLVPSSVFLGKSLKKVSSKVSQQRILSK---SFKVVSEYDEEKQTSQDRWAGLAYDISDD 82
S+ S F G+S+ S +++ + + ++ KV ++ K + RW GL D+SDD
Sbjct: 12 SMELGSSFTGRSVASPSGRIAGRPLRTQVQNGAKVFAKKTGSK-SQVGRWKGLDEDVSDD 70
Query: 83 QQDITRGKGMVDTLFQA--PMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMD 140
QQDITRG+ MVD+L+Q GTH A++SS +Y+SQ Q +L+N DG YI+P F+D
Sbjct: 71 QQDITRGRNMVDSLYQGFGVGAGGTHNAILSSEEYLSQA--QRTLNNIEDGFYISPPFLD 128
Query: 141 KVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 200
K+ +H+ KNFL+LP +KVPLILGIWGGKGQGK+FQC L F K+ INPI+MSAGELESGNA
Sbjct: 129 KISIHVAKNFLDLPKIKVPLILGIWGGKGQGKTFQCNLAFKKLDINPIVMSAGELESGNA 188
Query: 201 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 260
GEPAKL+RQRYREA+D+IKKGKM LFINDLDAGAGRMG TQYTVNNQMVNATLMNIAD
Sbjct: 189 GEPAKLVRQRYREASDVIKKGKMSSLFINDLDAGAGRMGAGTQYTVNNQMVNATLMNIAD 248
Query: 261 NPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGI 320
NPTNVQLPG+Y QEE PRVP+I TGNDFSTLYAPLIRDGRMEKFYWAP+R+DR+GVC GI
Sbjct: 249 NPTNVQLPGVYKQEEIPRVPVICTGNDFSTLYAPLIRDGRMEKFYWAPSRDDRVGVCMGI 308
Query: 321 FRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEG 380
F+ D V + D+ LVDTFPGQSIDFFGALRARVYDD+VR+++S +G+E IGKRLVNS+E
Sbjct: 309 FQHDGVNRTDVEHLVDTFPGQSIDFFGALRARVYDDKVREFVSTIGLENIGKRLVNSREA 368
Query: 381 PPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAAL 423
TFE+P+M L+ LL+YG +LV EQENVKRVQLAD YLS A L
Sbjct: 369 KVTFEKPEMDLNTLLKYGNLLVDEQENVKRVQLADSYLSGAEL 411
>gi|342360007|gb|AEL29575.1| chloroplast rubisco activase [Chlorella pyrenoidosa]
Length = 413
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 259/369 (70%), Positives = 307/369 (83%), Gaps = 5/369 (1%)
Query: 66 QTSQDRWAGLAYDI--SDDQQDITRGKGMVDTLFQAPMESG-THYAVMSSYDYISQGLRQ 122
+T + RW G+ D+ SDDQQDI RG+ MVD+LFQ G TH A+MSS DY+S R
Sbjct: 41 KTQRGRWRGMDADVDMSDDQQDIARGRQMVDSLFQGGGGMGGTHNAIMSSTDYLSTAARN 100
Query: 123 YSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAK 182
+ +N DG YI+PAF+DK+ +H+ KNF++LP +KVPLILGIWGGKGQGK+FQC L + K
Sbjct: 101 F--NNIEDGFYISPAFLDKMSIHVAKNFMDLPKIKVPLILGIWGGKGQGKTFQCNLAYKK 158
Query: 183 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 242
+GI+PI+MSAGELESGNAGEPAKLIRQRYREA+DIIKKG+MC LFINDLDAGAGRMG T
Sbjct: 159 LGISPIVMSAGELESGNAGEPAKLIRQRYREASDIIKKGRMCSLFINDLDAGAGRMGDAT 218
Query: 243 QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME 302
QYTVNNQMVNATLMNIAD+PTNVQLPG+Y EE PRVPI+ TGNDFSTLYAPLIRDGRME
Sbjct: 219 QYTVNNQMVNATLMNIADSPTNVQLPGVYKNEEIPRVPIVCTGNDFSTLYAPLIRDGRME 278
Query: 303 KFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 362
K+YW PTREDRIGVC GIF+ DNV + D+ KLVD FPGQSIDFFGALRARVYDD+VR+WI
Sbjct: 279 KYYWNPTREDRIGVCMGIFQHDNVDRADVEKLVDAFPGQSIDFFGALRARVYDDKVREWI 338
Query: 363 SEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAA 422
+ G+E IGKRL+NS+EG FE+P M L L++YG MLV+EQENVKRVQLAD+Y+S AA
Sbjct: 339 TGTGVENIGKRLINSREGKVEFEKPSMNLSTLMQYGNMLVEEQENVKRVQLADEYMSGAA 398
Query: 423 LGDANDDAI 431
L ++ ++
Sbjct: 399 LAGSSGSSL 407
>gi|307111891|gb|EFN60125.1| hypothetical protein CHLNCDRAFT_133490 [Chlorella variabilis]
Length = 419
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 260/396 (65%), Positives = 316/396 (79%), Gaps = 6/396 (1%)
Query: 43 SKVSQQRILSKSFKVVSEYDEEKQTS-QDRWAGL--AYDISDDQQDITRGKGMVDTLFQA 99
++V++Q + + +F + ++ S + RW G+ D SDDQQDI+RG+ MVD+LFQ
Sbjct: 22 ARVTRQNVSNGAFATMRRSSSSQRPSQKGRWKGMDAGMDASDDQQDISRGREMVDSLFQG 81
Query: 100 PME-SGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKV 158
GTH A++SS DY+S R + +N DG YI+PAF+DK+ +H+ KNFL+LP +KV
Sbjct: 82 GQGMGGTHNAILSSQDYLSTAQRNF--NNIEDGFYISPAFLDKISIHVAKNFLDLPKIKV 139
Query: 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII 218
PLILGIWGGKGQGK+FQC L + K+GI+PI+MSAGELESGNAGEPAKLIRQRYREA+DII
Sbjct: 140 PLILGIWGGKGQGKTFQCNLAYKKLGISPIVMSAGELESGNAGEPAKLIRQRYREASDII 199
Query: 219 KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 278
KKG+M LFINDLDAGAGRMG TQYTVNNQMVNATLMNIADNPTNVQLPG+Y EE PR
Sbjct: 200 KKGRMSSLFINDLDAGAGRMGDATQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPR 259
Query: 279 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTF 338
VPI+ TGNDFSTLYAPLIRDGRMEK+YW PTREDR+GVC GIF+ DNV + D+ LVD F
Sbjct: 260 VPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRVGVCMGIFQHDNVDRADVETLVDAF 319
Query: 339 PGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYG 398
PGQSIDFFGALRARVYDD+VR+WI G+E IGKRLVNS+EG F++P M L L+ YG
Sbjct: 320 PGQSIDFFGALRARVYDDKVREWIQGTGVENIGKRLVNSREGKVEFDKPPMPLSTLMNYG 379
Query: 399 RMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNG 434
+LV+EQENVKRVQLAD+Y+S AAL ++ ++ G
Sbjct: 380 NLLVEEQENVKRVQLADEYMSGAALAGSSGSSLPEG 415
>gi|116791872|gb|ABK26141.1| unknown [Picea sitchensis]
Length = 363
Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust.
Identities = 256/345 (74%), Positives = 291/345 (84%), Gaps = 2/345 (0%)
Query: 1 MAAVVSTVGA--VNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVV 58
MA + VG+ V++ LPL +S VPS+ F G LKK S S + FKVV
Sbjct: 1 MATAAAAVGSITVSSNLPLSSGQASILKTVPSTGFFGCGLKKTSFNASHTFTKANHFKVV 60
Query: 59 SEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
+E DE KQT +D+W GLA+D SDDQ DI RGKG VD+LFQAPM SGTH VMS+YDYIS
Sbjct: 61 AEIDEGKQTDKDKWKGLAFDESDDQMDIRRGKGKVDSLFQAPMGSGTHNVVMSTYDYIST 120
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
R Y DNT+DG YIAP+FMDK++VHI+KNF+NLPN+KVPLILGIWGGKGQGKSFQCEL
Sbjct: 121 AQRTYDFDNTMDGYYIAPSFMDKLLVHISKNFMNLPNIKVPLILGIWGGKGQGKSFQCEL 180
Query: 179 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 238
VFAK+GINPIMMSAGELESG+AGEPAKL+R+RYREA+DI+KKGKMC LFINDL+AGAGRM
Sbjct: 181 VFAKLGINPIMMSAGELESGDAGEPAKLLRKRYREASDIVKKGKMCVLFINDLEAGAGRM 240
Query: 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 298
G TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+++NPRVPI+VTGNDFSTLYAPLIRD
Sbjct: 241 GSTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNPRVPIVVTGNDFSTLYAPLIRD 300
Query: 299 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSI 343
GRMEKFYWAPTR+DRIGVC GIFR DNV +D+V+LVDTFPGQSI
Sbjct: 301 GRMEKFYWAPTRDDRIGVCQGIFRADNVHPDDVVRLVDTFPGQSI 345
>gi|302840850|ref|XP_002951971.1| hypothetical protein VOLCADRAFT_105291 [Volvox carteri f.
nagariensis]
gi|300262872|gb|EFJ47076.1| hypothetical protein VOLCADRAFT_105291 [Volvox carteri f.
nagariensis]
Length = 409
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 265/385 (68%), Positives = 311/385 (80%), Gaps = 10/385 (2%)
Query: 42 SSKVSQQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDI--SDDQQDITRGKGMVDTLFQA 99
S++V+ + + +VV+ ++ RW + D+ SDDQQDITRG+ MVD LFQ
Sbjct: 17 SARVAARSVRRAQLQVVAA----SRSQVGRWRNIDADVDTSDDQQDITRGRQMVDDLFQG 72
Query: 100 PMESG-THYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKV 158
+G TH AV+SS +Y+SQ + S +N DG YI+PAF+DK+ +HI KNF++LP +KV
Sbjct: 73 GFGAGGTHNAVLSSTEYLSQA--RASFNNIEDGFYISPAFLDKMTIHIAKNFMDLPKIKV 130
Query: 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII 218
PLILGIWGGKGQGK+FQC L + K+GI+PI+MSAGELESGNAGEPAKLIR RYREA+DII
Sbjct: 131 PLILGIWGGKGQGKTFQCALAYKKLGISPIVMSAGELESGNAGEPAKLIRTRYREASDII 190
Query: 219 KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 278
KKGKMC LFINDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPTNVQLPG+Y EE PR
Sbjct: 191 KKGKMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPR 250
Query: 279 VPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTF 338
VPI+ TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV + D+ +LVDTF
Sbjct: 251 VPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVSRGDVERLVDTF 310
Query: 339 PGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYG 398
PGQSIDFFGALRARVYDD VRKWI+EVGIE IG +LVN ++ +F + M+LD LL+YG
Sbjct: 311 PGQSIDFFGALRARVYDDMVRKWIAEVGIEGIGSKLVNGRQ-KVSFPKVSMSLDVLLKYG 369
Query: 399 RMLVQEQENVKRVQLADKYLSEAAL 423
R LV EQENVKRVQLAD YLS A L
Sbjct: 370 RALVDEQENVKRVQLADAYLSGAEL 394
>gi|94549022|gb|ABF38996.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase
[Pachysandra terminalis]
Length = 314
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 251/276 (90%), Positives = 270/276 (97%)
Query: 163 GIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK 222
GIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGK
Sbjct: 2 GIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGK 61
Query: 223 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282
MCCLFINDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVP+I
Sbjct: 62 MCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPVI 121
Query: 283 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQS 342
VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC+GIF+ DNVP ED+VK+VDTFPGQS
Sbjct: 122 VTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCTGIFKADNVPPEDVVKIVDTFPGQS 181
Query: 343 IDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLV 402
IDFFGALRARVYDDEVRKWIS VG++++GK+LVNS+EGPPTFEQPKMT++KLLEYG MLV
Sbjct: 182 IDFFGALRARVYDDEVRKWISGVGVDKVGKKLVNSREGPPTFEQPKMTVEKLLEYGNMLV 241
Query: 403 QEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
QEQENVKRVQLADKYLSEAALGDAN DAI +G+FYG
Sbjct: 242 QEQENVKRVQLADKYLSEAALGDANKDAINSGTFYG 277
>gi|1805719|emb|CAA71667.1| Rubisco activase [Chlorococcum littorale]
Length = 403
Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust.
Identities = 253/389 (65%), Positives = 309/389 (79%), Gaps = 7/389 (1%)
Query: 38 LKKVSSKVSQQRILSKSFKVVSEYDEEKQTSQDRWAGL--AYDISDDQQDITRGKGMVDT 95
+K + K + + K+ +V + + Q RWA + D+SDDQQDITRG+ MVD+
Sbjct: 5 MKNTAFKATGAKTAPKAVRVPACKASKSQAG--RWAAIDAGNDMSDDQQDITRGRDMVDS 62
Query: 96 LFQAPMESG-THYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLP 154
LFQ P G TH AV+SS DY+S R + +N DG YI+PAF+DK+ +H+ KNF++LP
Sbjct: 63 LFQGPGSGGGTHSAVLSSEDYLSTASRNF--NNVEDGFYISPAFLDKMTIHVAKNFMDLP 120
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 214
+KVPLILGIWGGKGQGK+FQC L + K+GI+PI+MSAGELESGNAGEPAKLIRQRYREA
Sbjct: 121 KIKVPLILGIWGGKGQGKTFQCALAYKKLGISPIVMSAGELESGNAGEPAKLIRQRYREA 180
Query: 215 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 274
+D +KKGKMC LFINDLDAGAGRMG TQYTVNNQMVNATLMNIADNPTNVQLPG+Y +
Sbjct: 181 SDSVKKGKMCSLFINDLDAGAGRMGMGTQYTVNNQMVNATLMNIADNPTNVQLPGVYKEV 240
Query: 275 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKL 334
+ PRVPI+ TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV + ++ L
Sbjct: 241 QIPRVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVNRGEVEVL 300
Query: 335 VDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKL 394
VD FPGQSIDFFGALRARVYDD+VR+++ G+E + KRL+NS+EG FE+P M LD L
Sbjct: 301 VDAFPGQSIDFFGALRARVYDDKVREFVKNTGVENLSKRLINSREGKVVFEKPSMNLDIL 360
Query: 395 LEYGRMLVQEQENVKRVQLADKYLSEAAL 423
++YG+ L EQENVKRVQLA++Y+ A+L
Sbjct: 361 MKYGKFLTNEQENVKRVQLAEEYMMGASL 389
>gi|159468147|ref|XP_001692244.1| rubisco activase [Chlamydomonas reinhardtii]
gi|38532373|gb|AAR23425.1| rubisco activase [Chlamydomonas reinhardtii]
gi|158278430|gb|EDP04194.1| rubisco activase [Chlamydomonas reinhardtii]
Length = 408
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 255/384 (66%), Positives = 307/384 (79%), Gaps = 10/384 (2%)
Query: 43 SKVSQQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPME 102
++V+ + + +VV+ KQ + R D SDDQQDITRG+ MVD LFQ
Sbjct: 18 ARVATRSVRRAQLQVVAS--SRKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFG 75
Query: 103 SG-THYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLI 161
+G TH AV+SS +Y+SQ + S +N DG YI+PAF+DK+ +HI KNF++LP +KVPLI
Sbjct: 76 AGGTHNAVLSSQEYLSQS--RASFNNIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLI 133
Query: 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 221
LGIWGGKGQGK+FQC L + K+GI PI+MSAGELESGNAGEPAKLIR RYREA+DIIKKG
Sbjct: 134 LGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKG 193
Query: 222 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 281
+MC LFINDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPTNVQLPG+Y EE PRVPI
Sbjct: 194 RMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPI 253
Query: 282 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQ 341
+ TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV + ++ LVDTFPGQ
Sbjct: 254 VCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQ 313
Query: 342 SIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLD--KLLEYGR 399
SIDFFGALRARVYDD VR+WI++ G+++IG++LVN+++ PK+++D L++YG+
Sbjct: 314 SIDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQ---KVAMPKVSMDLNVLIKYGK 370
Query: 400 MLVQEQENVKRVQLADKYLSEAAL 423
LV EQENVKRVQLAD YLS A L
Sbjct: 371 SLVDEQENVKRVQLADAYLSGAEL 394
>gi|412985893|emb|CCO17093.1| predicted protein [Bathycoccus prasinos]
Length = 480
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 256/392 (65%), Positives = 311/392 (79%), Gaps = 9/392 (2%)
Query: 44 KVSQQRILSKSF--KVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPM 101
+V+ + + K+F VS + RW G+ DISDDQQDI RG+ MVD+ FQ
Sbjct: 82 QVNTRSLAGKNFIGSKVSSVTNGSKVQMSRWKGMDEDISDDQQDIARGRDMVDSKFQGGF 141
Query: 102 -ESGTHYAVMSSYDYISQGLRQYSLDN-TLDG--LYIAPAFMDKVVVHITKNFLNLPNVK 157
GTH AVMSS DYISQG Q +LDN ++DG YI+P+F+DK VH+ KNF++LP +K
Sbjct: 142 GMGGTHNAVMSSTDYISQG--QKNLDNLSVDGNNYYISPSFLDKTAVHVAKNFMDLPKIK 199
Query: 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADI 217
VPLILG+WGGKGQGK+FQ L+FAK+GI+PI+MSAGELESGNAGEPAKL+RQRYREA+DI
Sbjct: 200 VPLILGVWGGKGQGKTFQSNLIFAKLGISPIVMSAGELESGNAGEPAKLVRQRYREASDI 259
Query: 218 IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 277
+KKGK+ LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG Y E P
Sbjct: 260 VKKGKLSTLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGQYEVVEIP 319
Query: 278 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDT 337
RVP+I TGNDFSTLYAPL+RDGRM+KFYWAPT EDR+G+ +GIF+ D V + D+ LV+
Sbjct: 320 RVPVIATGNDFSTLYAPLVRDGRMDKFYWAPTFEDRVGIANGIFKADGVDEADVRSLVEA 379
Query: 338 FPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPP-TFEQPKMTLDKLLE 396
F GQSIDFFGALRARVYDD+VR++I E+G+E IGKRLVN ++G +F+ P M+++ LLE
Sbjct: 380 FDGQSIDFFGALRARVYDDKVREFIQEMGLENIGKRLVNVRKGEEVSFDAPAMSIEILLE 439
Query: 397 YGRMLVQEQENVKRVQLADKYLSEAALGDAND 428
YG+ L EQENVKRVQLAD YL A L +++
Sbjct: 440 YGKALENEQENVKRVQLADAYLDGAVLAGSDE 471
>gi|132167|sp|P23489.1|RCA_CHLRE RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase; Flags:
Precursor
gi|167434|gb|AAA33091.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase
[Chlamydomonas reinhardtii]
gi|227783|prf||1710353A RuBisCO activase
Length = 408
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 255/384 (66%), Positives = 307/384 (79%), Gaps = 10/384 (2%)
Query: 43 SKVSQQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPME 102
++V+ + + +VV+ KQ + R D SDDQQDITRG+ MVD LFQ
Sbjct: 18 ARVATRSVRRAQLQVVAP--SRKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFG 75
Query: 103 SG-THYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLI 161
+G TH AV+SS +Y+SQ + S +N DG YI+PAF+DK+ +HI KNF++LP +KVPLI
Sbjct: 76 AGGTHNAVLSSQEYLSQS--RASFNNIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLI 133
Query: 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 221
LGIWGGKGQGK+FQC L + K+GI PI+MSAGELESGNAGEPAKLIR RYREA+DIIKKG
Sbjct: 134 LGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKG 193
Query: 222 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 281
+MC LFINDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPTNVQLPG+Y EE PRVPI
Sbjct: 194 RMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPI 253
Query: 282 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQ 341
+ TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV + ++ LVDTFPGQ
Sbjct: 254 VCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQ 313
Query: 342 SIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLD--KLLEYGR 399
SIDFFGALRARVYDD VR+WI++ G+++IG++LVN+++ PK+++D L++YG+
Sbjct: 314 SIDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQ---KVAMPKVSMDLNVLIKYGK 370
Query: 400 MLVQEQENVKRVQLADKYLSEAAL 423
LV EQENVKRVQLAD YLS A L
Sbjct: 371 SLVDEQENVKRVQLADAYLSGAEL 394
>gi|149392725|gb|ABR26165.1| ribulose bisphosphate carboxylase/oxygenase activase [Oryza sativa
Indica Group]
Length = 273
Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust.
Identities = 243/268 (90%), Positives = 260/268 (97%)
Query: 171 GKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 230
GKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIND
Sbjct: 1 GKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 60
Query: 231 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 290
LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+NPRVPIIVTGNDFST
Sbjct: 61 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFST 120
Query: 291 LYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALR 350
LYAPLIRDGRMEKFYWAPTR+DR+GVC GIFRTDNVP EDIVK+VD+FPGQSIDFFGALR
Sbjct: 121 LYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALR 180
Query: 351 ARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKR 410
ARVYDDEVRKW+S+ G+E IGKRLVNS+EGPP FEQPKMT++KL+EYG MLV+EQENVKR
Sbjct: 181 ARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKR 240
Query: 411 VQLADKYLSEAALGDANDDAIKNGSFYG 438
VQLA++YLSEAALGDAN DA+K GSFYG
Sbjct: 241 VQLAEQYLSEAALGDANSDAMKTGSFYG 268
>gi|145346050|ref|XP_001417509.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577736|gb|ABO95802.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 415
Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust.
Identities = 251/370 (67%), Positives = 296/370 (80%), Gaps = 4/370 (1%)
Query: 58 VSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQ-APMESGTHYAVMSSYDYI 116
VS + RW G+ DISDDQQDI RG+ MVD+ FQ A GTH AVMSS DY+
Sbjct: 31 VSSVSNGSKVEMSRWKGMDMDISDDQQDIARGRNMVDSKFQGATGIGGTHNAVMSSQDYL 90
Query: 117 SQGLRQYSL-DN-TLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSF 174
S G++ YS DN T + YI+P++MDKV+VH+ KNF+ LP +KVP+ILG+WGGKGQGK+F
Sbjct: 91 SAGMKTYSAHDNITTENFYISPSYMDKVIVHVAKNFMKLPKIKVPVILGVWGGKGQGKTF 150
Query: 175 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234
Q +L+F K+GI+PI+MSAGELESGNAGEPAKL+RQRYREA+DI+KKG+M LFINDLDAG
Sbjct: 151 QSDLIFKKLGISPIVMSAGELESGNAGEPAKLVRQRYREASDIVKKGRMSTLFINDLDAG 210
Query: 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 294
AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG Y E PRVPII TGNDFSTLYAP
Sbjct: 211 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGQYEVIEIPRVPIIATGNDFSTLYAP 270
Query: 295 LIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVY 354
L+RDGRM+KFYW+PTREDR+G+ +GIF D + KED+ LVDTF GQSIDFFGALR+RVY
Sbjct: 271 LVRDGRMDKFYWSPTREDRVGIANGIFMADGIEKEDVEVLVDTFEGQSIDFFGALRSRVY 330
Query: 355 DDEVRKWISEVGIERIGKRLVNSKEGPPT-FEQPKMTLDKLLEYGRMLVQEQENVKRVQL 413
DD VR +I EVG E +G RL+N ++G F PKMTL+ LL YG+ L EQEN+KR+QL
Sbjct: 331 DDLVRDFILEVGYEALGPRLINPRKGEEVNFNPPKMTLEVLLAYGKELENEQENIKRIQL 390
Query: 414 ADKYLSEAAL 423
AD YL A L
Sbjct: 391 ADAYLDGAVL 400
>gi|255075671|ref|XP_002501510.1| ribulose bisphosphate carboxylase/oxygenase activase,chloroplast
precursor [Micromonas sp. RCC299]
gi|226516774|gb|ACO62768.1| ribulose bisphosphate carboxylase/oxygenase activase,chloroplast
precursor [Micromonas sp. RCC299]
Length = 413
Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust.
Identities = 251/361 (69%), Positives = 288/361 (79%), Gaps = 3/361 (0%)
Query: 65 KQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPME-SGTHYAVMSSYDYISQGLRQY 123
K RW G+ DISDDQQDI RG+ MVD+ FQ GTH AVMSS DY+S G +
Sbjct: 39 KTVMMSRWKGMDEDISDDQQDIARGRNMVDSKFQGGFGLGGTHNAVMSSSDYVSDGFKDV 98
Query: 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM 183
S + T +G YI+ FMD+ VHI KNF++LP +KVPLILG+WGGKGQGK+FQ L+F K+
Sbjct: 99 S-NMTDEGYYISKGFMDRFCVHIAKNFMDLPKIKVPLILGVWGGKGQGKTFQSMLIFKKL 157
Query: 184 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQ 243
G+ PI+MSAGELESGNAGEPAKLIRQRYREA+DIIKKG+M LFINDLDAGAGRMGG+TQ
Sbjct: 158 GVGPIVMSAGELESGNAGEPAKLIRQRYREASDIIKKGRMSTLFINDLDAGAGRMGGSTQ 217
Query: 244 YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 303
YTVNNQMVNATLMN+ADNPTNVQLPG Y EE PRVPII TGNDFSTLYAPLIRDGRMEK
Sbjct: 218 YTVNNQMVNATLMNLADNPTNVQLPGQYQVEEIPRVPIIATGNDFSTLYAPLIRDGRMEK 277
Query: 304 FYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 363
+YW+P+ EDR+GV GIF+ D V ++D+ LV TF GQSIDFFGALRARVYDD+VR+WI
Sbjct: 278 YYWSPSFEDRVGVACGIFKADGVAEKDVEVLVRTFDGQSIDFFGALRARVYDDKVREWIR 337
Query: 364 EVGIERIGKRLVNSKEGPP-TFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAA 422
E GIE +G LVN K G TFE P+M+LD LL+YG+ L EQENVKRVQLAD YL A
Sbjct: 338 ETGIEAMGPLLVNPKRGSKVTFEPPRMSLDILLQYGKALEMEQENVKRVQLADAYLDGAV 397
Query: 423 L 423
L
Sbjct: 398 L 398
>gi|308802948|ref|XP_003078787.1| RuBisCO activase (IC) [Ostreococcus tauri]
gi|116057240|emb|CAL51667.1| RuBisCO activase (IC) [Ostreococcus tauri]
Length = 407
Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust.
Identities = 253/380 (66%), Positives = 296/380 (77%), Gaps = 8/380 (2%)
Query: 58 VSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPME-SGTHYAVMSSYDYI 116
VS + RW G+ DISDDQQDI RGK MVD+ FQ GTH AVMSS DY+
Sbjct: 22 VSSVSNGSKVEMSRWKGMDMDISDDQQDIARGKNMVDSKFQGGAGIGGTHNAVMSSQDYL 81
Query: 117 SQGLRQY-SLDN-TLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSF 174
S G++ Y DN T + YI+ ++MDKVVVHI KNF+ LP +KVPLILG+WGGKGQGK+F
Sbjct: 82 SAGMKTYDGHDNITAENFYISKSYMDKVVVHIAKNFMQLPKIKVPLILGVWGGKGQGKTF 141
Query: 175 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234
Q +L+F K+GINPI+MSAGELESGNAGEPAKL+RQRYREA+DI+KKG+M LFINDLDAG
Sbjct: 142 QSDLIFRKLGINPIVMSAGELESGNAGEPAKLVRQRYREASDIVKKGRMSTLFINDLDAG 201
Query: 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 294
AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG Y E PRVPII TGNDFSTLYAP
Sbjct: 202 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGQYEVIEIPRVPIIATGNDFSTLYAP 261
Query: 295 LIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVY 354
L+RDGRM+KFYW+PT EDR+G+ +GIF D V ED+ LV TF GQSIDFFGALRARVY
Sbjct: 262 LVRDGRMDKFYWSPTFEDRVGIANGIFMADGVSPEDVEVLVSTFEGQSIDFFGALRARVY 321
Query: 355 DDEVRKWISEVGIERIGKRLVNSKEGPP-TFEQPKMTLDKLLEYGRMLVQEQENVKRVQL 413
DD+VR +I VG +++GKRL+N ++G FE P MTL+ LL YG+ + EQEN+KR+QL
Sbjct: 322 DDKVRDFILSVGYDQLGKRLINPRKGEEVVFEPPAMTLEVLLAYGKEIENEQENIKRIQL 381
Query: 414 ADKYLSEAAL----GDANDD 429
AD YL A L G +N D
Sbjct: 382 ADAYLDGAVLAGSGGSSNTD 401
>gi|23320705|gb|AAN15946.1| rubisco activase, partial [Medicago sativa]
Length = 270
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 243/269 (90%), Positives = 254/269 (94%)
Query: 168 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227
+GQGKSFQ ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA+DII+KGKMCCLF
Sbjct: 2 EGQGKSFQAELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDIIRKGKMCCLF 61
Query: 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 287
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+N RVPIIVTGND
Sbjct: 62 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGND 121
Query: 288 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFG 347
FSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DN+ K+DIVK+VDTFPGQSIDFFG
Sbjct: 122 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCIGIFRHDNIAKDDIVKIVDTFPGQSIDFFG 181
Query: 348 ALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQEN 407
ALRARVYDDEVRKW+S VGIE IGK+LVNSKEGPP FEQPKMTL+KLLEYG MLV EQEN
Sbjct: 182 ALRARVYDDEVRKWVSGVGIETIGKKLVNSKEGPPVFEQPKMTLEKLLEYGNMLVSEQEN 241
Query: 408 VKRVQLADKYLSEAALGDANDDAIKNGSF 436
VKRVQLADKYL AALGDAN DAIK G F
Sbjct: 242 VKRVQLADKYLEGAALGDANQDAIKEGKF 270
>gi|303277399|ref|XP_003057993.1| ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226460650|gb|EEH57944.1| ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 419
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 242/356 (67%), Positives = 282/356 (79%), Gaps = 4/356 (1%)
Query: 71 RWAGLAYDISDDQQDITRGKGMVDTLFQAPME-SGTHYAVMSSYDYISQGLRQYSLDNTL 129
RW G+ DISDDQQDI RG+GMVD+ FQ GT A+M DY+S G + S + +
Sbjct: 46 RWKGMDEDISDDQQDIARGRGMVDSKFQGGFGLGGTQNAIMQGSDYVSDGFKDLS-NMSD 104
Query: 130 DGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 189
+G YI+ ++MDK+ VH+ KNF++LP +KVPLILGIWGGKGQGK+FQ L+F ++GI PI+
Sbjct: 105 EGYYISKSYMDKITVHVAKNFMDLPKIKVPLILGIWGGKGQGKTFQSTLIFKRLGIAPII 164
Query: 190 MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 249
MSAGELESGNAGEPAKLIRQRYREA+DIIKKGKM LFINDLDAGAGRMGG+TQYTVNNQ
Sbjct: 165 MSAGELESGNAGEPAKLIRQRYREASDIIKKGKMSTLFINDLDAGAGRMGGSTQYTVNNQ 224
Query: 250 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 309
MVNATLMN+ADNPTNVQLPG Y EE PRVPII TGNDFSTLYAPLIRDGRM+KFYW+PT
Sbjct: 225 MVNATLMNLADNPTNVQLPGQYQVEEIPRVPIIATGNDFSTLYAPLIRDGRMDKFYWSPT 284
Query: 310 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIER 369
EDR GV GIF+ D V ++D+ LV TF GQSIDFFGALRARVYD +VR+W+ VG E
Sbjct: 285 FEDRCGVACGIFKADGVNEKDVEVLVRTFDGQSIDFFGALRARVYDQKVREWVQTVGQEN 344
Query: 370 IGKRLVNSK--EGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAAL 423
IG LVN +G FE P M+L+ LL++G+ L EQENVKRVQLAD YL A L
Sbjct: 345 IGSYLVNPSRDKGKLEFEPPVMSLEVLLQHGKALEGEQENVKRVQLADAYLDGAVL 400
>gi|410927496|gb|AFV93500.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
beta2, partial [Gossypium barbadense]
Length = 250
Score = 497 bits (1280), Expect = e-138, Method: Compositional matrix adjust.
Identities = 230/250 (92%), Positives = 242/250 (96%)
Query: 94 DTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNL 153
D+LFQAPM GTHYAVMSSY+Y+SQGLR Y LDN +DG YIAPAFMDK+VVHITKNF+ L
Sbjct: 1 DSLFQAPMNDGTHYAVMSSYEYLSQGLRTYDLDNNMDGFYIAPAFMDKLVVHITKNFMTL 60
Query: 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYRE 213
PN+KVPLILG+WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYRE
Sbjct: 61 PNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYRE 120
Query: 214 AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 273
AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+
Sbjct: 121 AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNK 180
Query: 274 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVK 333
EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC+GIFRTDNVP +D+VK
Sbjct: 181 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPVDDLVK 240
Query: 334 LVDTFPGQSI 343
LVDTFPGQSI
Sbjct: 241 LVDTFPGQSI 250
>gi|149941202|emb|CAO02533.1| putative rubisco activase [Vigna unguiculata]
Length = 251
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 222/249 (89%), Positives = 237/249 (95%)
Query: 115 YISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSF 174
Y+S GL+ Y+ DN DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSF
Sbjct: 2 YLSTGLKTYNFDNMKDGYYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSF 61
Query: 175 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234
QCELVFAKMGINPI+MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAG
Sbjct: 62 QCELVFAKMGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAG 121
Query: 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 294
AGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAP
Sbjct: 122 AGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENLRVPIIVTGNDFSTLYAP 181
Query: 295 LIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVY 354
LIRDGRMEKFYWAPTR+DR+GVC GIFRTD VP+E++ KLVDTFPGQSIDFFGALRARVY
Sbjct: 182 LIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEEVTKLVDTFPGQSIDFFGALRARVY 241
Query: 355 DDEVRKWIS 363
DDEVRKW+S
Sbjct: 242 DDEVRKWVS 250
>gi|3687676|gb|AAC62215.1| rubisco activase precursor [Datisca glomerata]
Length = 244
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 225/244 (92%), Positives = 235/244 (96%)
Query: 131 GLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190
G YIAPAFMDK+VVHITKNF+ PN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM
Sbjct: 1 GFYIAPAFMDKLVVHITKNFMTFPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 60
Query: 191 SAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 250
SAGELESGNAGEPAKLIRQR REAADIIKKGKM CLFINDLDAGAGR+GGTTQYTVNNQM
Sbjct: 61 SAGELESGNAGEPAKLIRQRCREAADIIKKGKMSCLFINDLDAGAGRLGGTTQYTVNNQM 120
Query: 251 VNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 310
VNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR
Sbjct: 121 VNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 180
Query: 311 EDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERI 370
EDRIGVC+GIFR+DNV KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS VG++ +
Sbjct: 181 EDRIGVCTGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVQDV 240
Query: 371 GKRL 374
GK L
Sbjct: 241 GKSL 244
>gi|410927480|gb|AFV93499.1| chloroplast ribulose bisphosphate carboxylase/oxygenase activase
beta1, partial [Gossypium barbadense]
Length = 236
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 221/236 (93%), Positives = 230/236 (97%)
Query: 108 AVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 167
AVMSSY+YISQGLR Y LDN +DG YIAPAFMDK+VVHITKN++ LPN+KVPLILGIWGG
Sbjct: 1 AVMSSYEYISQGLRTYDLDNNMDGFYIAPAFMDKLVVHITKNYMTLPNIKVPLILGIWGG 60
Query: 168 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF
Sbjct: 61 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 120
Query: 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 287
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGND
Sbjct: 121 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGND 180
Query: 288 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSI 343
FSTLYAPLIRDGRMEKFYWAPTREDRIGVC+GIFRTDNVP +DIVKLVDTFPGQSI
Sbjct: 181 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPVDDIVKLVDTFPGQSI 236
>gi|149941206|emb|CAO02535.1| putative rubisco activase [Vigna unguiculata]
Length = 244
Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust.
Identities = 217/242 (89%), Positives = 233/242 (96%)
Query: 130 DGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 189
DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPI+
Sbjct: 3 DGYYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIV 62
Query: 190 MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 249
MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAGAGR+GGTTQYTVNNQ
Sbjct: 63 MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGTTQYTVNNQ 122
Query: 250 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 309
MVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT
Sbjct: 123 MVNATLMNIADNPTNVQLPGMYNKEENLRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 182
Query: 310 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIER 369
R+DR+GVC GIFRTD VP++++ KLVDTFPGQSIDFFGALRA+VYDDEVRKW+S VG++
Sbjct: 183 RDDRVGVCKGIFRTDGVPEKEVTKLVDTFPGQSIDFFGALRAKVYDDEVRKWVSGVGVDG 242
Query: 370 IG 371
IG
Sbjct: 243 IG 244
>gi|149941204|emb|CAO02534.1| putative rubisco activase [Vigna unguiculata]
Length = 229
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 209/227 (92%), Positives = 221/227 (97%)
Query: 130 DGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 189
DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPI+
Sbjct: 3 DGYYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIV 62
Query: 190 MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 249
MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAGAGR+GGTTQYTVNNQ
Sbjct: 63 MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGTTQYTVNNQ 122
Query: 250 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 309
MVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT
Sbjct: 123 MVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 182
Query: 310 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 356
R+DR+GVC GIFRTD VP+E++ +LVDTFPGQSIDFFGALRARVYDD
Sbjct: 183 RDDRVGVCKGIFRTDGVPEEEVYQLVDTFPGQSIDFFGALRARVYDD 229
>gi|149941210|emb|CAO02537.1| putative rubisco activase [Vigna unguiculata]
Length = 236
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 209/235 (88%), Positives = 223/235 (94%)
Query: 115 YISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSF 174
Y+S GL+ Y+ DN DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSF
Sbjct: 2 YLSTGLKTYNFDNMKDGYYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSF 61
Query: 175 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234
QCELVFAKMGINPI+MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAG
Sbjct: 62 QCELVFAKMGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAG 121
Query: 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 294
AGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAP
Sbjct: 122 AGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENLRVPIIVTGNDFSTLYAP 181
Query: 295 LIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGAL 349
LIRDGRMEKFYWAPTR+DR+GVC GIFRTD VP+E++ KLVDTFPGQSIDFFGAL
Sbjct: 182 LIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEEVYKLVDTFPGQSIDFFGAL 236
>gi|327323113|gb|AEA48974.1| rubisco activase, partial [Rosa roxburghii]
Length = 265
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 221/316 (69%), Positives = 246/316 (77%), Gaps = 51/316 (16%)
Query: 123 YSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAK 182
Y +DN DGLYIAPAFMDK+VVHITKNF++LPN+KVPLILGIWGGKGQGKSFQCELVFAK
Sbjct: 1 YDMDNMKDGLYIAPAFMDKLVVHITKNFMSLPNIKVPLILGIWGGKGQGKSFQCELVFAK 60
Query: 183 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 242
MGINPIMMSAGELESGNAG E A +I++ + GR
Sbjct: 61 MGINPIMMSAGELESGNAG-----------EPAKLIRQRYL------------GR----- 92
Query: 243 QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME 302
G YN+EENPRVPIIVTGNDFSTLYAPLIRDGRME
Sbjct: 93 -----------------------DHAGRYNKEENPRVPIIVTGNDFSTLYAPLIRDGRME 129
Query: 303 KFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 362
KFYWAPTR+DRIGVC+GIF+TD+V + DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI
Sbjct: 130 KFYWAPTRDDRIGVCTGIFKTDSVAQSDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 189
Query: 363 SEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAA 422
S VG++ +GK+LVNSKEGPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLAD+YL+EAA
Sbjct: 190 SGVGVDGVGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADQYLNEAA 249
Query: 423 LGDANDDAIKNGSFYG 438
LGDAN DAI G+F+G
Sbjct: 250 LGDANSDAIDRGTFFG 265
>gi|154259484|gb|ABS72022.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase activase
[Olea europaea]
Length = 261
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 203/227 (89%), Positives = 218/227 (96%)
Query: 212 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 271
REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY
Sbjct: 1 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 60
Query: 272 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDI 331
N+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFRTD+VP E +
Sbjct: 61 NKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDDVPDEHV 120
Query: 332 VKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTL 391
VKLVD+FPGQSIDFFGALRARVYDDEVRKWI VG++ IGK+LVNS+EGPPTF+QPKM+L
Sbjct: 121 VKLVDSFPGQSIDFFGALRARVYDDEVRKWIGGVGVDNIGKKLVNSREGPPTFDQPKMSL 180
Query: 392 DKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
+KLLEYG MLVQEQENVKRVQLAD+YLS AALGDAN DA+++GSFYG
Sbjct: 181 EKLLEYGNMLVQEQENVKRVQLADQYLSSAALGDANKDAMQSGSFYG 227
>gi|6967045|emb|CAB72439.1| rubisco activase [Pinus halepensis]
Length = 226
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 201/226 (88%), Positives = 214/226 (94%)
Query: 81 DDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMD 140
DDQQDI RGKG VD+LFQAPM SGTH A+MSSYDYIS R YSLDN +DG YIAPAFMD
Sbjct: 1 DDQQDIRRGKGKVDSLFQAPMGSGTHNAIMSSYDYISTAQRTYSLDNMMDGYYIAPAFMD 60
Query: 141 KVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 200
K+VVHI+KNF+NLPN+KVPLILGIWGGKGQGKSFQCELVFAK+GINPIMMSAGELESG+A
Sbjct: 61 KLVVHISKNFMNLPNIKVPLILGIWGGKGQGKSFQCELVFAKLGINPIMMSAGELESGDA 120
Query: 201 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 260
GEPAKLIR+RYREAADI+KKGKMC LFINDLDAGAGRMG TTQYTVNNQMVNATLMNIAD
Sbjct: 121 GEPAKLIRKRYREAADIVKKGKMCVLFINDLDAGAGRMGSTTQYTVNNQMVNATLMNIAD 180
Query: 261 NPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 306
NPTNVQLPGMYN+EENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYW
Sbjct: 181 NPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYW 226
>gi|428227229|ref|YP_007111326.1| ribulose 1,5-bisphosphate carboxylase small subunit [Geitlerinema
sp. PCC 7407]
gi|427987130|gb|AFY68274.1| ribulose 1,5-bisphosphate carboxylase small subunit [Geitlerinema
sp. PCC 7407]
Length = 415
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 197/287 (68%), Positives = 243/287 (84%), Gaps = 1/287 (0%)
Query: 132 LYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191
Y++P F+DKV VHITKNFL+LP VKVPLILGI G KG+GKSFQCELVF +MGI P+ MS
Sbjct: 3 FYVSPRFLDKVAVHITKNFLDLPGVKVPLILGIHGRKGEGKSFQCELVFERMGIEPVHMS 62
Query: 192 AGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 250
AGELES +AG+PA+LIR RYREA + I+ +G+MC L INDLDAGAGR G TQYTVN Q+
Sbjct: 63 AGELESPDAGDPARLIRLRYREAGEYIRTRGRMCVLMINDLDAGAGRFDGGTQYTVNTQL 122
Query: 251 VNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 310
VNATLMNIADNPTNVQLPG Y+++ PRVPI+VTGNDFSTLYAPLIRDGRMEKFYW P
Sbjct: 123 VNATLMNIADNPTNVQLPGSYDEKPLPRVPILVTGNDFSTLYAPLIRDGRMEKFYWDPDY 182
Query: 311 EDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERI 370
EDR+G+ SGIF D + ++D +LVDTFP QSIDFFGALR+R YD++VR++I EVG+E++
Sbjct: 183 EDRVGIVSGIFSDDGLSRQDFERLVDTFPAQSIDFFGALRSRFYDEQVRRFIQEVGVEQV 242
Query: 371 GKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
RL+NSKEG PTF++P+ TL++LLE+G ++VQEQE V+ +LA++Y
Sbjct: 243 SFRLLNSKEGAPTFQKPRFTLERLLEFGYLMVQEQERVRTSRLAEEY 289
>gi|100380|pir||S25484 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) (clone
TA1.1) - common tobacco (fragment)
gi|19992|emb|CAA78704.1| ribulose bisphosphate carboxylase activase [Nicotiana tabacum]
Length = 232
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 201/232 (86%), Positives = 216/232 (93%)
Query: 205 KLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTN 264
KLI QRYREAA+II+KG MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTN
Sbjct: 1 KLISQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTN 60
Query: 265 VQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTD 324
VQLPGMYN++EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFRTD
Sbjct: 61 VQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTD 120
Query: 325 NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTF 384
NVP+E +VK+VDTFPGQSIDFFGALRARVYDDEVRKW+S GIE IG +L+NS +GPPTF
Sbjct: 121 NVPEEAVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTF 180
Query: 385 EQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSF 436
EQPKMT++KLLEYG MLVQEQENVKRVQLA+ YL EAALGDAN DAI G+F
Sbjct: 181 EQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 232
>gi|119855475|gb|ABM01871.1| chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase
activase [Morus alba var. multicaulis]
Length = 246
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 193/211 (91%), Positives = 207/211 (98%)
Query: 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 287
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGND
Sbjct: 1 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGND 60
Query: 288 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFG 347
FSTLYAPLIRDGRMEKFYWAPTREDRIGVC+GIFR+D+VP+EDIVK+VDTFPGQSIDFFG
Sbjct: 61 FSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRSDHVPEEDIVKIVDTFPGQSIDFFG 120
Query: 348 ALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQEN 407
ALRARVYDDEVRKWIS VG+E IGK+LVNSKEGPPTF+QPKMT++KLLEYG MLVQEQEN
Sbjct: 121 ALRARVYDDEVRKWISGVGVETIGKKLVNSKEGPPTFDQPKMTVEKLLEYGNMLVQEQEN 180
Query: 408 VKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
VKRVQLADKYLSEAALGDAN D+IK+G+FYG
Sbjct: 181 VKRVQLADKYLSEAALGDANQDSIKSGTFYG 211
>gi|411118859|ref|ZP_11391239.1| ribulose bisphosphate carboxylase small subunit [Oscillatoriales
cyanobacterium JSC-12]
gi|410710722|gb|EKQ68229.1| ribulose bisphosphate carboxylase small subunit [Oscillatoriales
cyanobacterium JSC-12]
Length = 507
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 190/312 (60%), Positives = 243/312 (77%), Gaps = 4/312 (1%)
Query: 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM 183
++D YI+P F+DK+ VHITKN+L+LPNVKVPLILG+ G KG+GKSFQCELVF +M
Sbjct: 54 AIDAEFMSFYISPRFLDKIAVHITKNYLDLPNVKVPLILGVHGRKGEGKSFQCELVFERM 113
Query: 184 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTT 242
G+N + MSAGELES +AG+PA+LIR RYREAA+++K +GKM L IND+DAGAGR+ T
Sbjct: 114 GVNVVHMSAGELESPDAGDPARLIRLRYREAAELVKVRGKMAVLMINDIDAGAGRVDQYT 173
Query: 243 QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME 302
QYTVN Q+VN TLMNIADNPTNVQLPG Y+ E R+PIIVTGNDFSTLY PL+RDGRME
Sbjct: 174 QYTVNTQLVNGTLMNIADNPTNVQLPGSYDSEPIQRIPIIVTGNDFSTLYQPLVRDGRME 233
Query: 303 KFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 362
KFYW P +DR+G+ +GIF+ D V + DI KLVDTFP Q+IDFFGALR+R++D+++R +I
Sbjct: 234 KFYWEPNWDDRVGIVAGIFQVDPVSRADIEKLVDTFPNQAIDFFGALRSRLFDEQIRNFI 293
Query: 363 SEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLA---DKYLS 419
VGIER+ +R+VNSKE PP F++P +L L+E G +V EQ+ V+ LA +K+L
Sbjct: 294 HSVGIERVSQRVVNSKEAPPEFKKPDFSLPHLIEVGNQMVYEQKRVQESGLAQEYNKFLY 353
Query: 420 EAALGDANDDAI 431
LGD + +
Sbjct: 354 NRRLGDTDSSTL 365
>gi|110740175|dbj|BAF01986.1| Rubisco activase [Arabidopsis thaliana]
Length = 259
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 189/222 (85%), Positives = 204/222 (91%)
Query: 217 IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 276
+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN
Sbjct: 1 LIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEEN 60
Query: 277 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVD 336
RVPII TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFRTD + EDIV LVD
Sbjct: 61 ARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVD 120
Query: 337 TFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLE 396
FPGQSIDFFGALRARVYDDEVRK++ +G+E+IGKRLVNS+EGPP FEQP+MT +KL+E
Sbjct: 121 QFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLME 180
Query: 397 YGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
YG MLV EQENVKRVQLA+ YLS+AALGDAN DAI G+FYG
Sbjct: 181 YGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYG 222
>gi|334117637|ref|ZP_08491728.1| ribulose bisphosphate carboxylase small chain [Microcoleus
vaginatus FGP-2]
gi|333460746|gb|EGK89354.1| ribulose bisphosphate carboxylase small chain [Microcoleus
vaginatus FGP-2]
Length = 425
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 186/286 (65%), Positives = 233/286 (81%), Gaps = 1/286 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YI+P F+DKV VHITKNFLNLP V+VPLILGI G KG+GK+FQ ELVF +MG P+M+S
Sbjct: 4 YISPNFLDKVAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQTELVFRRMGFEPVMISG 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+PA+LIR RYREAA+ I+ +G+MC +FINDLDAGAGR TTQYTVN QMV
Sbjct: 64 GELESPDAGDPARLIRLRYREAAEQIRVRGEMCAIFINDLDAGAGRFDSTTQYTVNTQMV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
NATLMNIADNPTNVQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P+R+
Sbjct: 124 NATLMNIADNPTNVQLPGSYDSTPLDRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPSRD 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
D+IG+ GIF +D + K +IV LVD FP Q+IDFF ALR+R+YD+++R++I ++GIER+
Sbjct: 184 DKIGIVGGIFESDKLSKTEIVGLVDNFPDQAIDFFSALRSRIYDEQIREFIHKIGIERVS 243
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
KRLVN+ E P F+ P +L LLE G ++V +Q+ ++ ++L D+Y
Sbjct: 244 KRLVNTLEAAPDFQNPNFSLAHLLEMGSLMVGQQKRIQEMRLVDEY 289
>gi|428320865|ref|YP_007118747.1| ribulose 1,5-bisphosphate carboxylase small subunit [Oscillatoria
nigro-viridis PCC 7112]
gi|428244545|gb|AFZ10331.1| ribulose 1,5-bisphosphate carboxylase small subunit [Oscillatoria
nigro-viridis PCC 7112]
Length = 424
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 187/286 (65%), Positives = 233/286 (81%), Gaps = 1/286 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YI+P F+DKV VH+TKNFLNLP V+VPLILGI G KG+GK+FQ ELVF +MG P+M+S
Sbjct: 4 YISPNFLDKVAVHVTKNFLNLPGVRVPLILGIHGRKGEGKTFQTELVFRRMGFEPVMISG 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+PA+LIR RYREAA+ I+ +G+MC +FINDLDAGAGR TTQYTVN QMV
Sbjct: 64 GELESPDAGDPARLIRLRYREAAEQIRVRGEMCAIFINDLDAGAGRFDTTTQYTVNTQMV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
NATLMNIADNPTNVQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P+R+
Sbjct: 124 NATLMNIADNPTNVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPSRD 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
D+IG+ GIF +D + K +IV LVD FP Q+IDFF ALR+R+YD++VR++I +VGIER+
Sbjct: 184 DKIGIVGGIFESDKLSKTEIVGLVDHFPDQAIDFFSALRSRIYDEQVREFIHKVGIERVS 243
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
KRLVN+ E P F+ P +L LLE G ++V +Q+ ++ ++L D+Y
Sbjct: 244 KRLVNTLEAAPDFKNPDFSLAHLLEMGSLMVGQQKRIQEMRLVDEY 289
>gi|300868066|ref|ZP_07112703.1| Ribulose bisphosphate carboxylase/oxygenase activase [Oscillatoria
sp. PCC 6506]
gi|300333904|emb|CBN57881.1| Ribulose bisphosphate carboxylase/oxygenase activase [Oscillatoria
sp. PCC 6506]
Length = 425
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 183/304 (60%), Positives = 236/304 (77%), Gaps = 1/304 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YI+P+F+DKV VHITKNFL+LP V+VPLILGI G KG+GK+FQCEL F ++G P+ +S
Sbjct: 4 YISPSFLDKVAVHITKNFLDLPGVRVPLILGIHGRKGEGKTFQCELAFERLGFEPVTISG 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+PA+LIR RYREAA+ I+ +G+MC +FINDLDAGAGR TTQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYREAAEQIRVRGEMCAIFINDLDAGAGRFDSTTQYTVNTQLV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
NATLMNIADNPTNVQLPG Y+ RVPIIVTGNDF+TLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTNVQLPGSYDDTPLHRVPIIVTGNDFATLYAPLIRDGRMEKFYWEPNRD 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
D+IG+ SGIF D +P+ +I + VD FP Q+IDFF ALR+R+YD+++R++I +GIE++
Sbjct: 184 DKIGIVSGIFEADGMPQSEIAEFVDAFPDQAIDFFSALRSRIYDEQIREFIHGIGIEKVS 243
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAI 431
KRLVNS E P F +P +L +L+E GR +V +Q +K ++L ++Y G N +
Sbjct: 244 KRLVNSLEAAPHFPKPNFSLSRLIEIGRAMVGQQYRIKEMRLVEEYNQNRLFGSQNSGEV 303
Query: 432 KNGS 435
+ S
Sbjct: 304 SSNS 307
>gi|427728382|ref|YP_007074619.1| ribulose bisphosphate carboxylase small subunit [Nostoc sp. PCC
7524]
gi|427364301|gb|AFY47022.1| ribulose bisphosphate carboxylase small subunit [Nostoc sp. PCC
7524]
Length = 415
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 183/286 (63%), Positives = 227/286 (79%), Gaps = 1/286 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YIAP F+DK+ VHITKNFLNLP V+VPLILGI G KG+GK+FQCEL F KMG+ ++S
Sbjct: 4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISG 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRD 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
D++G+ GIF D + + ++ +LVDTFP QSIDFF ALR+R+YD+++R +I +VG E +
Sbjct: 184 DKVGIVGGIFGEDGLSQREVEQLVDTFPNQSIDFFSALRSRIYDEQIRNFIHQVGFEHVS 243
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
R+VNS EGPP F++P+ +L L+E G +V EQ+ V+ QL D+Y
Sbjct: 244 LRVVNSLEGPPAFKKPEFSLSHLIESGNFMVGEQKRVETSQLVDEY 289
>gi|220909662|ref|YP_002484973.1| ribulose bisphosphate carboxylase small chain [Cyanothece sp. PCC
7425]
gi|219866273|gb|ACL46612.1| ribulose bisphosphate carboxylase small chain [Cyanothece sp. PCC
7425]
Length = 423
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/310 (60%), Positives = 239/310 (77%), Gaps = 3/310 (0%)
Query: 131 GLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190
G YIAP F+DK+ VHITKN+L+LPNVKVPLILGI G KG+GK+F CELVF +MGI + M
Sbjct: 2 GYYIAPRFLDKLSVHITKNYLDLPNVKVPLILGIHGRKGEGKTFMCELVFKRMGIGVVYM 61
Query: 191 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 249
SAGELES +AG+P++LIR RYREA + K G+M L IND+DAG GR+ TTQYTVN Q
Sbjct: 62 SAGELESPDAGDPSRLIRLRYREAGEWSKVNGRMAALMINDVDAGIGRVDETTQYTVNTQ 121
Query: 250 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 309
+VNATLMNIADNPTNVQLPG Y+QE R+PII+TGNDFST+YAPLIRDGRMEKFYW P
Sbjct: 122 LVNATLMNIADNPTNVQLPGSYDQEPTRRIPIILTGNDFSTMYAPLIRDGRMEKFYWEPD 181
Query: 310 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIER 369
R DR+G+ GIF D +P +I KLVD+FP QSIDFFGALR+R+YD+++R+ I EVGIER
Sbjct: 182 RSDRLGIVQGIFALDQIPDPEIEKLVDSFPDQSIDFFGALRSRLYDEQIRQLIQEVGIER 241
Query: 370 IGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY--LSEAALGDAN 427
I R+VNS E P F +P +L L+E G+++V+EQ+ ++ ++L+++Y + A
Sbjct: 242 ISPRVVNSAEPLPEFRRPNFSLPHLIEIGQLMVREQQRIRELRLSEEYNRPGQTARSSTP 301
Query: 428 DDAIKNGSFY 437
D AI + Y
Sbjct: 302 DGAIASPPAY 311
>gi|113475266|ref|YP_721327.1| ribulose 1,5-bisphosphate carboxylase small subunit [Trichodesmium
erythraeum IMS101]
gi|110166314|gb|ABG50854.1| ribulose 1,5-bisphosphate carboxylase small subunit [Trichodesmium
erythraeum IMS101]
Length = 423
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 180/293 (61%), Positives = 231/293 (78%), Gaps = 1/293 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YI+P F+DK+ VHITKNFL +P ++VPLI+GI G KG+GK+FQC+LVF KMGI P+ +S
Sbjct: 4 YISPRFIDKLAVHITKNFLEIPRIRVPLIIGIHGRKGEGKTFQCQLVFEKMGIEPVTISG 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+PA+L+R RYREA++ +K +G+MC LFINDLDAGAGR G TQYTVN Q+V
Sbjct: 64 GELESKDAGDPARLLRLRYREASEKVKVQGRMCALFINDLDAGAGRFDGGTQYTVNTQLV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
NATLMNIADNPTNVQLPG Y++ R+PIIVTGNDFSTLYAPLIRDGRMEKFYW P RE
Sbjct: 124 NATLMNIADNPTNVQLPGSYDETPLHRIPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRE 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
DR+G+ IF+TD + DI L+D F Q+IDFF ALR+R+YD+++R +I +VGIE+I
Sbjct: 184 DRVGIVGSIFKTDELSTGDIDNLIDEFSDQAIDFFSALRSRIYDEQIRDFIHQVGIEKIS 243
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALG 424
+R+VNS E P F QP + +LLEYG+++V EQE ++ + L ++Y G
Sbjct: 244 RRVVNSVEKIPDFPQPTFNVSRLLEYGKIMVGEQERIRELGLVEEYNKSRLFG 296
>gi|434391832|ref|YP_007126779.1| ribulose 1,5-bisphosphate carboxylase small subunit [Gloeocapsa sp.
PCC 7428]
gi|428263673|gb|AFZ29619.1| ribulose 1,5-bisphosphate carboxylase small subunit [Gloeocapsa sp.
PCC 7428]
Length = 462
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 188/300 (62%), Positives = 233/300 (77%), Gaps = 3/300 (1%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YI+P F+DK+ VHITKNFL+LP ++VPLILGI G KG+GK+FQCELVF +MGI I +S
Sbjct: 4 YISPRFLDKLAVHITKNFLDLPGIRVPLILGIHGRKGEGKTFQCELVFERMGIEVIHISG 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+PA+LIR RYREAA++IK +GKM L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYREAAELIKVRGKMVALMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIR+GRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIREGRMEKFYWEPDRD 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
D+IG+ GIF D + +++ +LVD FP Q+IDFF ALR+RVYD+++R++I E GIER+
Sbjct: 184 DKIGIVGGIFAEDGLSAQEVTQLVDAFPDQAIDFFSALRSRVYDEQIRRFIHETGIERVS 243
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAI 431
R+VNS EGPP F++P L LLE G +VQEQ+ V+ +L +Y AL AN + I
Sbjct: 244 LRVVNSTEGPPVFQKPDFRLSHLLESGNFMVQEQQRVESSRLVHEY--NQALYYANRNPI 301
>gi|414076620|ref|YP_006995938.1| ribulose bisphosphate carboxylase activase [Anabaena sp. 90]
gi|413970036|gb|AFW94125.1| ribulose bisphosphate carboxylase activase [Anabaena sp. 90]
Length = 407
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 181/286 (63%), Positives = 228/286 (79%), Gaps = 1/286 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YIAP+F+DK+ VHITKNFLN+P ++VPLILGI G KG+GK+FQCELVF KMGI ++S
Sbjct: 4 YIAPSFLDKLAVHITKNFLNIPGIRVPLILGIHGRKGEGKTFQCELVFEKMGIEVTLISG 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRM+KFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSNPLCRVPIIVTGNDFSTLYAPLIRDGRMDKFYWEPNRD 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
D++G+ GIF D + +++I + VDTFP QSIDFF ALR+R+YD+++R +I ++G E +
Sbjct: 184 DKVGIVGGIFAEDGLSQKEIAQFVDTFPHQSIDFFSALRSRIYDEQIRHFIHKIGFENVS 243
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
R+VNS EGPP F++P TL L+E G+ +V EQ+ V+ L D+Y
Sbjct: 244 LRVVNSLEGPPAFKKPDFTLSHLIESGKFMVGEQKRVETSHLVDEY 289
>gi|75910107|ref|YP_324403.1| ribulose 1,5-bisphosphate carboxylase small subunit [Anabaena
variabilis ATCC 29413]
gi|75703832|gb|ABA23508.1| ribulose 1,5-bisphosphate carboxylase small subunit [Anabaena
variabilis ATCC 29413]
Length = 414
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 185/286 (64%), Positives = 226/286 (79%), Gaps = 1/286 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YIAP F+DK+ VHITKNFLN+P V+VPLILGI G KG+GK+FQCEL F KMGI ++S
Sbjct: 4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISG 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRD 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
D++G+ GIF D + K +I +LVDTFP QSIDFF ALR+R+YD+++R +I +VG ERI
Sbjct: 184 DKVGIVGGIFAEDGLSKREIEQLVDTFPKQSIDFFSALRSRIYDEQIRDFIHQVGFERIS 243
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
R+VNS E PP F++P +L L+E G +++ EQ+ V QL D+Y
Sbjct: 244 LRVVNSVEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEY 289
>gi|332710946|ref|ZP_08430882.1| ribulose 1,5-bisphosphate carboxylase small subunit [Moorea
producens 3L]
gi|332350260|gb|EGJ29864.1| ribulose 1,5-bisphosphate carboxylase small subunit [Moorea
producens 3L]
Length = 448
Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust.
Identities = 180/286 (62%), Positives = 230/286 (80%), Gaps = 1/286 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YI+P F+DK+ VHITKNFL++P+V+VPLILGI G KG+GKSFQCELVF +MGI + MS+
Sbjct: 6 YISPRFIDKLAVHITKNFLDIPHVRVPLILGIHGRKGEGKSFQCELVFERMGIEAVHMSS 65
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+PA+LIR RYRE A++I+ KGKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 66 GELESPDAGDPARLIRLRYRETAEMIRVKGKMCVLMINDLDAGAGRFDERTQYTVNTQLV 125
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
+ TLMNIADNPTNVQLPG Y+ + RVPIIVTGNDFSTLYAPL RDGRM KFYW P RE
Sbjct: 126 HGTLMNIADNPTNVQLPGSYDSQPIHRVPIIVTGNDFSTLYAPLTRDGRMSKFYWEPNRE 185
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
DRIG+ SGIF D + +I +L+DTF Q+IDFF ALR+R+YD+++RK+I ++GI+R+
Sbjct: 186 DRIGIVSGIFHGDGLSSGEIEQLIDTFDNQAIDFFSALRSRIYDEQIRKFIYDIGIDRVS 245
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
R+VNSK+GPP FE P ++ +L+E+G ++ EQ+ ++ LA +Y
Sbjct: 246 SRVVNSKQGPPKFETPNFSISRLIEFGELIKAEQQRLELSGLAREY 291
>gi|10720250|sp|Q06721.1|RCA_ANASC RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase;
Short=RA; Short=RuBisCO activase
gi|485516|pir||S33627 ribulose-bisphosphate carboxylase activase (EC 6.3.4.-) - Anabaena
sp. (strain CA)
gi|296414|emb|CAA48129.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Anabaena
sp. CA]
Length = 415
Score = 393 bits (1009), Expect = e-106, Method: Compositional matrix adjust.
Identities = 182/286 (63%), Positives = 225/286 (78%), Gaps = 1/286 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YIAP F+DK+ VHITKNFLNLP V+VPLILGI G KG+GK+FQCEL F KMG+ ++S
Sbjct: 4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISG 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPHRD 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
+++G+ GIF D + + D+ KLVD+FP QSIDFF ALR+R+YD+++R +I +VG E +
Sbjct: 184 EKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVS 243
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
R+VNS EGPP F++P TL L+E +V EQ+ ++ QL D+Y
Sbjct: 244 LRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY 289
>gi|427707439|ref|YP_007049816.1| ribulose 1,5-bisphosphate carboxylase small subunit [Nostoc sp. PCC
7107]
gi|427359944|gb|AFY42666.1| ribulose 1,5-bisphosphate carboxylase small subunit [Nostoc sp. PCC
7107]
Length = 415
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 181/286 (63%), Positives = 224/286 (78%), Gaps = 1/286 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YIAP F+DK+ VHITKNFLNLP V+VPLILGI G KG+GK+FQCEL F KMG+ ++S
Sbjct: 4 YIAPRFLDKIAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISG 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+PA+LIR RYRE A+ +K +G+MC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAEQVKVRGRMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRD 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
+++G+ GIF D + ++ + VDTFP QSIDFF A+R+R+YD+++RK+I E+G E I
Sbjct: 184 EKVGIVGGIFVEDGLSSREVEQFVDTFPNQSIDFFSAVRSRIYDEQIRKFIHEIGFENIS 243
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
R+VNS EGPPTF++P L L+E G +V EQ+ V+ QL D+Y
Sbjct: 244 LRVVNSVEGPPTFKKPNFNLSHLIESGHFMVGEQKRVENSQLVDEY 289
>gi|354567922|ref|ZP_08987089.1| ribulose bisphosphate carboxylase small chain [Fischerella sp.
JSC-11]
gi|353541596|gb|EHC11063.1| ribulose bisphosphate carboxylase small chain [Fischerella sp.
JSC-11]
Length = 415
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 185/286 (64%), Positives = 225/286 (78%), Gaps = 1/286 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YI+P F+DKV VHITKNFL+LP ++VPLILGI G KG+GKSFQCELVF KMG+ +S
Sbjct: 4 YISPRFLDKVAVHITKNFLDLPGLRVPLILGIHGRKGEGKSFQCELVFEKMGVEVTHISG 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDPTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPDRD 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
D+IG+ GIF D + + +I +LVDTF QSIDFF ALR+R+YD+++R +I EVG+ER+
Sbjct: 184 DKIGIVGGIFSEDGLSQREIEQLVDTFLNQSIDFFSALRSRIYDEQIRDFIYEVGVERVS 243
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
+R+VNS EGPP F +P L L+E G ++V EQ+ V QL +Y
Sbjct: 244 RRVVNSLEGPPQFRKPNFNLSHLIEMGNVMVTEQQRVLTSQLVTEY 289
>gi|209526170|ref|ZP_03274701.1| ribulose bisphosphate carboxylase small chain [Arthrospira maxima
CS-328]
gi|376005139|ref|ZP_09782687.1| Ribulose bisphosphate carboxylase/oxygenase activase [Arthrospira
sp. PCC 8005]
gi|423065450|ref|ZP_17054240.1| ribulose bisphosphate carboxylase/oxygenase activase [Arthrospira
platensis C1]
gi|209493426|gb|EDZ93750.1| ribulose bisphosphate carboxylase small chain [Arthrospira maxima
CS-328]
gi|375326497|emb|CCE18440.1| Ribulose bisphosphate carboxylase/oxygenase activase [Arthrospira
sp. PCC 8005]
gi|406713143|gb|EKD08317.1| ribulose bisphosphate carboxylase/oxygenase activase [Arthrospira
platensis C1]
Length = 434
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 175/286 (61%), Positives = 231/286 (80%), Gaps = 1/286 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YI+P F+DKV VHITKNFL++P +KVPLILGI G KG+GK+FQCELVF MGI P+M+S
Sbjct: 4 YISPRFLDKVSVHITKNFLDIPRIKVPLILGIHGRKGEGKTFQCELVFKTMGIEPVMISG 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+P++L+R RYREAA+ ++ KG+MC +FIND DAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPSRLLRLRYREAAEQVRVKGQMCAIFINDFDAGAGRFDSGTQYTVNTQLV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
NATLMNIADNPTNVQLPG Y++ R+PII+TGNDFSTLYAPLIRDGRM+KFYW P+RE
Sbjct: 124 NATLMNIADNPTNVQLPGSYDETPLHRIPIIITGNDFSTLYAPLIRDGRMDKFYWEPSRE 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
DRI + GIF D++ I+KLVD F GQ+IDFF A+R+R+YD+++R++I G+++I
Sbjct: 184 DRIAIVRGIFADDSLSDSQIIKLVDDFTGQAIDFFSAMRSRIYDEQIREFIYHQGLDKIS 243
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
+RLVNS + PP QP +L L+E GR +V+EQ+ +++++L ++Y
Sbjct: 244 RRLVNSVDKPPELPQPDFSLQHLIESGRAMVEEQQQIQKLRLVEEY 289
>gi|440681100|ref|YP_007155895.1| ribulose 1,5-bisphosphate carboxylase small subunit [Anabaena
cylindrica PCC 7122]
gi|428678219|gb|AFZ56985.1| ribulose 1,5-bisphosphate carboxylase small subunit [Anabaena
cylindrica PCC 7122]
Length = 414
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 182/286 (63%), Positives = 226/286 (79%), Gaps = 1/286 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YIAP+F+DK+ VHITKNFL+LP V+VPLILGI G KG+GK+FQCEL F KMGI ++S
Sbjct: 4 YIAPSFLDKLAVHITKNFLHLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISG 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRD 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
D++G+ GIF D + +I +LVDTF Q+IDFF +LR+R+YD ++R +I +VG E+I
Sbjct: 184 DKVGIVGGIFAPDGFSQREIEELVDTFANQAIDFFSSLRSRIYDQQIRNFIHQVGFEQIS 243
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
KR+VNS EGPP F++P L L+E G+++V EQ+ V+ L D+Y
Sbjct: 244 KRVVNSLEGPPEFKKPNFNLSHLIESGKLMVGEQKRVETSHLVDEY 289
>gi|443313470|ref|ZP_21043081.1| ribulose bisphosphate carboxylase small subunit [Synechocystis sp.
PCC 7509]
gi|442776413|gb|ELR86695.1| ribulose bisphosphate carboxylase small subunit [Synechocystis sp.
PCC 7509]
Length = 498
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 181/286 (63%), Positives = 224/286 (78%), Gaps = 1/286 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YI+P+F+DK+ VHITKNFL LP V+VPLILGI G KG+GKSFQCELVF +MGI I MSA
Sbjct: 4 YISPSFLDKLAVHITKNFLELPGVRVPLILGIHGRKGEGKSFQCELVFERMGIEAIHMSA 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+P +L+R RYREA+++ K +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPGRLVRLRYREASELSKVRGKMCVLMINDLDAGAGRFDRGTQYTVNTQLV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
N TLMNIADNPT+VQLPG Y+ R+PIIVTGNDFSTLYAPLIRDGRMEKF+W P R+
Sbjct: 124 NGTLMNIADNPTDVQLPGSYDSTPLQRIPIIVTGNDFSTLYAPLIRDGRMEKFFWEPNRD 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
D++G+ SGIF D +PK DI KLVDTF Q IDFF ALR+R+YD+++R +I G E++
Sbjct: 184 DKVGIVSGIFEPDGLPKRDIEKLVDTFLNQPIDFFSALRSRIYDEQIRDFIHTTGFEKVS 243
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
R+VNS E PTF +P L +L+EYG ++V+EQ+ V+ L +Y
Sbjct: 244 LRVVNSTEAAPTFAKPNFQLPRLIEYGNLMVKEQQRVENSGLVREY 289
>gi|298491099|ref|YP_003721276.1| ribulose bisphosphate carboxylase small chain ['Nostoc azollae'
0708]
gi|298233017|gb|ADI64153.1| ribulose bisphosphate carboxylase small chain ['Nostoc azollae'
0708]
Length = 408
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 179/286 (62%), Positives = 225/286 (78%), Gaps = 1/286 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YIAP+F+DK+ VHITKNFLNLP ++VPLILGI G KG+GKSFQCELVF KMGI ++S
Sbjct: 4 YIAPSFLDKLAVHITKNFLNLPGIRVPLILGIHGRKGEGKSFQCELVFDKMGIETTLISG 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESSDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
NATLMNIAD+PT+VQLPG Y+ RVPIIVTGNDFSTLYAPL RDGRMEKFYW P R+
Sbjct: 124 NATLMNIADSPTDVQLPGSYDSNPTRRVPIIVTGNDFSTLYAPLTRDGRMEKFYWEPNRD 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
D++G+ GIF D + + +I +LVD F QSIDFF LR+R+YD+++R++I +G E +
Sbjct: 184 DKVGMVGGIFAEDALLQREIEQLVDNFAYQSIDFFSTLRSRIYDEQIREFIHTIGFENVS 243
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
R+VNS EGPP F++P +L L++ G+ +V EQ+ V+ QL D+Y
Sbjct: 244 SRVVNSAEGPPAFKRPNFSLSHLIDSGKFMVAEQKRVETSQLVDEY 289
>gi|17229025|ref|NP_485573.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Nostoc
sp. PCC 7120]
gi|20139326|sp|P58555.1|RCA_ANASP RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase;
Short=RA; Short=RuBisCO activase
gi|17135353|dbj|BAB77899.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Nostoc
sp. PCC 7120]
Length = 414
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/286 (64%), Positives = 225/286 (78%), Gaps = 1/286 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YIAP F+DK+ VHITKNFLN+P V+VPLILGI G KG+GK+FQCEL F KMGI ++S
Sbjct: 4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISG 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRD 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
D++G+ GIF D + + +I +LVDTFP QSIDFF ALR+R+YD ++R +I +VG ERI
Sbjct: 184 DKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFERIS 243
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
R+VNS E PP F++P +L L+E G +++ EQ+ V QL D+Y
Sbjct: 244 LRVVNSLEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEY 289
>gi|119508823|ref|ZP_01627975.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Nodularia
spumigena CCY9414]
gi|119466352|gb|EAW47237.1| ribulose 1,5-bisphosphate carboxylase/oxygenase activase [Nodularia
spumigena CCY9414]
Length = 416
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 184/286 (64%), Positives = 225/286 (78%), Gaps = 1/286 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YIAP F+DK+ VHITKNFLNLP V+VPLILGI G KG+GK+FQC+LVF KMGI +S
Sbjct: 4 YIAPRFLDKLGVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCQLVFEKMGIEVTNISG 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN QMV
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQMV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPDRD 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
D++G+ GIF D + + ++ +LVDTFP QSIDF+ ALR+R+YD +VR++I +VG ER+
Sbjct: 184 DKVGIVGGIFAEDGLSQREVAQLVDTFPHQSIDFYSALRSRIYDQQVREFIHQVGFERVS 243
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
R+VNS E PP F++P +L L+ G +V EQ+ V+ QL D+Y
Sbjct: 244 SRIVNSAEKPPEFKKPDFSLSNLISAGNFMVGEQQRVETSQLVDEY 289
>gi|428299641|ref|YP_007137947.1| ribulose 1,5-bisphosphate carboxylase small subunit [Calothrix sp.
PCC 6303]
gi|428236185|gb|AFZ01975.1| ribulose 1,5-bisphosphate carboxylase small subunit [Calothrix sp.
PCC 6303]
Length = 425
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 179/288 (62%), Positives = 228/288 (79%), Gaps = 1/288 (0%)
Query: 131 GLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190
G YIAP F+DK+ VHITKNFLN+P V+VPLILG+ G KG+GKSFQCELVF +MGI ++
Sbjct: 2 GYYIAPRFLDKLAVHITKNFLNIPGVRVPLILGVHGRKGEGKSFQCELVFERMGIEVTLI 61
Query: 191 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 249
S GELES +AG+PA+LIR RYRE A+++K +GKMC L INDLDAGAGR TQYTVN Q
Sbjct: 62 SGGELESPDAGDPARLIRLRYRETAELVKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQ 121
Query: 250 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 309
+VNATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P
Sbjct: 122 LVNATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPD 181
Query: 310 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIER 369
R+D++GV GIF D + + ++ +LVDTFP QSIDF+ A+R+R+YD++V +I ++G+E
Sbjct: 182 RDDKVGVVEGIFGDDGLSRREVAQLVDTFPNQSIDFYSAMRSRLYDEQVLHFIHDIGVEN 241
Query: 370 IGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
+ +R+VNS E P F +P +L +LLE G +V EQ++V+ QL ++Y
Sbjct: 242 VSQRVVNSAEAAPIFGKPDFSLSRLLEMGNFMVSEQQHVENSQLVEQY 289
>gi|428305071|ref|YP_007141896.1| ribulose 1,5-bisphosphate carboxylase small subunit [Crinalium
epipsammum PCC 9333]
gi|428246606|gb|AFZ12386.1| ribulose 1,5-bisphosphate carboxylase small subunit [Crinalium
epipsammum PCC 9333]
Length = 427
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 174/286 (60%), Positives = 232/286 (81%), Gaps = 1/286 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YI+P F+DK+ VHITKNFL+LP V+VPLILGI G KG+GK+FQCELVF +MGI + MSA
Sbjct: 4 YISPRFLDKLAVHITKNFLDLPGVRVPLILGIHGRKGEGKTFQCELVFQRMGIEVVHMSA 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+P++L+R RYREAA++IK +GKMC L INDLDAGAGR TQYTVN QMV
Sbjct: 64 GELESPDAGDPSRLVRLRYREAAELIKVRGKMCVLMINDLDAGAGRFDQGTQYTVNTQMV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
NATLMNIADNPTNVQLPG Y+ RVPI+VTGNDF+TLYAPLIRDGRMEKF+W PTR+
Sbjct: 124 NATLMNIADNPTNVQLPGSYDSTPLHRVPILVTGNDFTTLYAPLIRDGRMEKFHWEPTRD 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
+++G+ GI+ D + + +I +LVD F Q++DFFGALR+R+YD+++R++I +VG ++
Sbjct: 184 EKVGIVRGIYSEDGLSESEIAQLVDNFVTQAVDFFGALRSRIYDEQIRQFIHQVGYNKVS 243
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
+VNS +GPP F++P +L +L+E+G ++ QEQ+ V+ +L ++Y
Sbjct: 244 SAVVNSVDGPPIFQKPDFSLSRLIEFGNLMAQEQQRVQSSRLVEEY 289
>gi|428310574|ref|YP_007121551.1| ribulose bisphosphate carboxylase small subunit [Microcoleus sp.
PCC 7113]
gi|428252186|gb|AFZ18145.1| ribulose bisphosphate carboxylase small subunit [Microcoleus sp.
PCC 7113]
Length = 437
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 181/286 (63%), Positives = 227/286 (79%), Gaps = 1/286 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YI+P F++K+ VHITKN+L+LP V+VPLILGI G KG+GKSFQCELVF +MG+ + MSA
Sbjct: 4 YISPRFLNKLSVHITKNYLDLPGVRVPLILGIHGRKGEGKSFQCELVFERMGVEAVHMSA 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+PA+LIR RYREAA++I+ +GKM L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYREAAELIRVRGKMAVLMINDLDAGAGRFDQGTQYTVNTQLV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
N TLMNIADNPT+VQLPG Y+ RVPI+VTGNDFSTLYAPLIRDGRMEKFYW P RE
Sbjct: 124 NGTLMNIADNPTDVQLPGSYDSTPLHRVPILVTGNDFSTLYAPLIRDGRMEKFYWEPDRE 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
DRIG+ SGIF D +P++ I +LVDTFPGQ IDFF ALR+R+YD+++ ++I ++G ERI
Sbjct: 184 DRIGIVSGIFSEDGLPRQQIEQLVDTFPGQPIDFFSALRSRIYDEQILQFIQKIGFERIS 243
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
R+VNS E P F +P L +L+E+G +L EQ+ V+ + L +Y
Sbjct: 244 SRIVNSAEEAPKFPKPNFNLSRLIEFGNLLRGEQKQVENMGLVREY 289
>gi|186684323|ref|YP_001867519.1| ribulose bisphosphate carboxylase, small chain [Nostoc punctiforme
PCC 73102]
gi|186466775|gb|ACC82576.1| ribulose bisphosphate carboxylase, small chain [Nostoc punctiforme
PCC 73102]
Length = 425
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 182/288 (63%), Positives = 223/288 (77%), Gaps = 1/288 (0%)
Query: 131 GLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190
G YIAP F+DK+ VHITKNFL LP V+VP+ILGI G KG+GK+FQC+LVF KMGI +
Sbjct: 2 GYYIAPRFLDKLAVHITKNFLKLPGVRVPVILGIHGRKGEGKTFQCQLVFEKMGIEVTHV 61
Query: 191 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 249
S GELES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q
Sbjct: 62 SGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQ 121
Query: 250 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 309
+VNATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P
Sbjct: 122 LVNATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPD 181
Query: 310 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIER 369
R+D++G+ GIF D + ++++ +LVDTF QSIDFF ALR+R+YD+++R +I +VG ER
Sbjct: 182 RDDKVGIVKGIFEPDGLSQKEVEQLVDTFVNQSIDFFSALRSRIYDEQIRNYIHQVGFER 241
Query: 370 IGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
+ +VNS EGPP F++P L L+E G LV EQ+ V+ L D Y
Sbjct: 242 VSLSVVNSTEGPPEFKKPDFRLSHLIESGNFLVGEQKRVENSHLVDDY 289
>gi|149941208|emb|CAO02536.1| putative rubisco activase [Vigna unguiculata]
Length = 214
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 182/202 (90%), Positives = 193/202 (95%)
Query: 115 YISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSF 174
Y+S GL+ Y+ DN DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSF
Sbjct: 13 YLSTGLKTYNFDNMKDGYYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSF 72
Query: 175 QCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234
QCELVFAKMGINPI+MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAG
Sbjct: 73 QCELVFAKMGINPIVMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAG 132
Query: 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 294
AGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAP
Sbjct: 133 AGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENLRVPIIVTGNDFSTLYAP 192
Query: 295 LIRDGRMEKFYWAPTREDRIGV 316
LIRDGRMEKFYWAPTR+DR+GV
Sbjct: 193 LIRDGRMEKFYWAPTRDDRVGV 214
>gi|443478603|ref|ZP_21068337.1| AAA ATPase central domain protein [Pseudanabaena biceps PCC 7429]
gi|443016085|gb|ELS30823.1| AAA ATPase central domain protein [Pseudanabaena biceps PCC 7429]
Length = 297
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 183/287 (63%), Positives = 225/287 (78%), Gaps = 1/287 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YI+P F+DK+ VH+ KNF+ LPNV VPLILGI GGKG+GKSFQCEL F K+GI PI MS
Sbjct: 4 YISPRFLDKLAVHLAKNFMKLPNVTVPLILGIHGGKGEGKSFQCELAFEKLGIEPIRMSG 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+PA+LIR RYREAA+++K +GKMC L INDLDAGAGR+ TTQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRMRYREAAELVKVRGKMCALLINDLDAGAGRVDSTTQYTVNTQLV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
NATLMNIADNPTNVQLPG Y+ RVPIIVTGNDFSTLYAPL+RDGRMEKF+W P R
Sbjct: 124 NATLMNIADNPTNVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLVRDGRMEKFFWMPDRT 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
DRIG+ SGIF DN+P+ +I +LVD +P +SIDFFG+LR+ +YD++VRK++ ++G+ER+
Sbjct: 184 DRIGIVSGIFAPDNIPQWEIERLVDMYPDRSIDFFGSLRSSLYDEQVRKFVYDIGLERLS 243
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
RLVNS E P F P L L E G L+ E + V + L +Y+
Sbjct: 244 LRLVNSTEALPEFRPPSFDLRTLKEAGDRLLAEGDRVSQRNLIQEYM 290
>gi|427715651|ref|YP_007063645.1| ribulose 1,5-bisphosphate carboxylase small subunit [Calothrix sp.
PCC 7507]
gi|427348087|gb|AFY30811.1| ribulose 1,5-bisphosphate carboxylase small subunit [Calothrix sp.
PCC 7507]
Length = 417
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 180/286 (62%), Positives = 227/286 (79%), Gaps = 1/286 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YIAP F+DK+ VHITKNFL LP V+VPLILGI G KG+GK+FQCELVF KMGI ++S
Sbjct: 4 YIAPRFLDKLAVHITKNFLKLPGVRVPLILGIHGRKGEGKTFQCELVFEKMGIEVTLISG 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDF+TLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFTTLYAPLIRDGRMEKFYWEPDRD 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
D++G+ GIF D + ++++ +LVDTFP QSIDF+ A+R+R+YD+++R +I +VG E++
Sbjct: 184 DKVGIVGGIFEPDGLSRKEVEQLVDTFPHQSIDFYSAVRSRIYDEQIRNYIHKVGFEQVS 243
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
+VNS EGPP F++P L L+E G ++V EQ+ V+ QL D+Y
Sbjct: 244 LSVVNSVEGPPEFKKPNFGLSHLIEAGNLMVGEQKRVENSQLVDEY 289
>gi|434404079|ref|YP_007146964.1| ribulose bisphosphate carboxylase small subunit [Cylindrospermum
stagnale PCC 7417]
gi|428258334|gb|AFZ24284.1| ribulose bisphosphate carboxylase small subunit [Cylindrospermum
stagnale PCC 7417]
Length = 415
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 181/286 (63%), Positives = 224/286 (78%), Gaps = 1/286 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YIAP F+DK+ VHITKNFL LP V+VPLILGI G KG+GK+FQCELVF KMGI +S
Sbjct: 4 YIAPRFLDKLGVHITKNFLQLPGVRVPLILGIHGRKGEGKTFQCELVFEKMGIEVTQISG 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P+R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPSRD 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
D++G+ GIF D + + + +LVDTF QS+DFF ALR+R+YD+++R++I +VG ER+
Sbjct: 184 DKVGIVGGIFAEDGLSQRQVEQLVDTFINQSVDFFSALRSRIYDEQIREFIHQVGFERVS 243
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
R+VNS E PP F++P +L L+E G ++V EQ+ V+ L D Y
Sbjct: 244 LRVVNSAEKPPEFKKPDFSLSHLIEAGNLIVGEQQRVETSHLVDDY 289
>gi|434387097|ref|YP_007097708.1| ATP-dependent 26S proteasome regulatory subunit [Chamaesiphon
minutus PCC 6605]
gi|428018087|gb|AFY94181.1| ATP-dependent 26S proteasome regulatory subunit [Chamaesiphon
minutus PCC 6605]
Length = 302
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 181/287 (63%), Positives = 230/287 (80%), Gaps = 2/287 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YIAPAF+DK+ VHITKNFL+LP VKVPLILG+ G KG+GK+FQCELVF +M + I +SA
Sbjct: 4 YIAPAFLDKLAVHITKNFLDLPGVKVPLILGVHGRKGEGKTFQCELVFDRMKVEAIHISA 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+ A+LIR RYREAA+IIK +G+M L IND+DAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDSARLIRLRYREAAEIIKVRGRMAVLVINDIDAGAGRFDQGTQYTVNTQLV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
NATLMNIAD+PTNVQLPG Y+ PR+PIIVTGND STLYAPLIRDGRMEK+YW PTRE
Sbjct: 124 NATLMNIADHPTNVQLPGSYDSTPLPRIPIIVTGNDLSTLYAPLIRDGRMEKYYWVPTRE 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
D+IG+ GIF DN+ + +IV LVD FP +++DFF A+RAR+YD+++R +I +VG+ER+
Sbjct: 184 DKIGIVRGIFAPDNISEREIVNLVDRFPDRAVDFFAAMRARIYDEQIRDFIHKVGLERLS 243
Query: 372 KRLVNSKEG-PPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
+VN G PTF +P TL +L+E+G +LVQEQ++V +L ++Y
Sbjct: 244 IEVVNPASGIKPTFPKPYFTLARLIEFGNLLVQEQKSVDESRLVEEY 290
>gi|149941212|emb|CAO02538.1| putative rubisco activase [Vigna unguiculata]
Length = 194
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 179/192 (93%), Positives = 187/192 (97%)
Query: 130 DGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 189
DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPI+
Sbjct: 3 DGYYIAPAFMDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIV 62
Query: 190 MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 249
MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC LFINDLDAGAGR+GGTTQYTVNNQ
Sbjct: 63 MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCALFINDLDAGAGRLGGTTQYTVNNQ 122
Query: 250 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 309
MVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT
Sbjct: 123 MVNATLMNIADNPTNVQLPGMYNKEENLRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 182
Query: 310 REDRIGVCSGIF 321
R+DR+GVC GIF
Sbjct: 183 RDDRVGVCKGIF 194
>gi|19988|emb|CAA78702.1| ribulose bisphosphate carboxylase activase [Nicotiana tabacum]
Length = 206
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 179/204 (87%), Positives = 192/204 (94%)
Query: 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 294
AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAP
Sbjct: 2 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAP 61
Query: 295 LIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVY 354
LIRDGRMEKFYWAPTREDRIGVC+GIFRTDNVP ED+VK+VD FPGQSIDFFGALRARVY
Sbjct: 62 LIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVY 121
Query: 355 DDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLA 414
DDEVRKW+S GIE+IG +L+NS +GPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLA
Sbjct: 122 DDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLA 181
Query: 415 DKYLSEAALGDANDDAIKNGSFYG 438
DKYL EAALGDAN DAI NGSF+
Sbjct: 182 DKYLKEAALGDANADAINNGSFFA 205
>gi|119486453|ref|ZP_01620511.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
gi|119456355|gb|EAW37486.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
Length = 445
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 174/286 (60%), Positives = 226/286 (79%), Gaps = 2/286 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YI+P F+DK+ VHITKNFL + N++VPLILGI G KG+GK+FQCELVF KMG P+ +S
Sbjct: 4 YISPRFLDKLAVHITKNFLKISNLRVPLILGIHGRKGEGKTFQCELVFEKMGFEPVTISG 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+P++LIR RYREA++ K +G+MC LFIND+DAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPSRLIRLRYREASEQTKVRGQMCALFINDIDAGAGRFDSGTQYTVNTQLV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
NATLMNIADNPTNVQLPG Y++ R+PIIVTGNDFSTLYAPLIRDGRMEKFYW P +
Sbjct: 124 NATLMNIADNPTNVQLPGSYDETPLQRIPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNSK 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
+R+ + GIF+ + + K+DI+KLVD FP QS+DFF ALR+R+YD++++ +I ++GIE+I
Sbjct: 184 ERVEIVEGIFQQELL-KQDIIKLVDEFPEQSVDFFSALRSRIYDEQIQSFIHQMGIEKIS 242
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
KR+VNS E PP F +P LLE G +V EQ ++ ++L ++Y
Sbjct: 243 KRIVNSTEKPPEFNKPNFKFSHLLEMGHQMVAEQRRIQELRLVEEY 288
>gi|428220631|ref|YP_007104801.1| ribulose bisphosphate carboxylase small subunit [Synechococcus sp.
PCC 7502]
gi|427993971|gb|AFY72666.1| ribulose bisphosphate carboxylase small subunit [Synechococcus sp.
PCC 7502]
Length = 418
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 178/289 (61%), Positives = 227/289 (78%), Gaps = 2/289 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YI+P F+DK+ VHITKNFLNLP + VPLILGI G KG+GKSFQCELVF MGI P+ MSA
Sbjct: 4 YISPRFLDKLAVHITKNFLNLPGLTVPLILGIHGRKGEGKSFQCELVFKLMGIEPVRMSA 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+P +LIR RYREAAD+IK +GKMC L IND+DAGAGR+ +TQYTVN Q+V
Sbjct: 64 GELESPDAGDPVRLIRTRYREAADLIKVRGKMCVLLINDIDAGAGRVDSSTQYTVNTQLV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
N TLMNIADNPT+VQLPG Y E RVPI++TGNDFSTLYAPL+RDGRMEKFYW PT+E
Sbjct: 124 NGTLMNIADNPTDVQLPGSYETEPISRVPILLTGNDFSTLYAPLLRDGRMEKFYWEPTKE 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
DRIG+ +GIF+ D + ++++ +L+ FP QSIDFFGALR++VYD +VR +I E+GI ++
Sbjct: 184 DRIGIVTGIFKADGLTEQNVEELISNFPHQSIDFFGALRSQVYDQQVRDFIREIGINKVS 243
Query: 372 KRLVNSKEGPPTFEQ-PKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 419
+VN+ + F+Q P L L++ G M+V EQ+ V+ L ++Y +
Sbjct: 244 THIVNNPDLTVKFQQSPNFGLPYLIKLGNMMVHEQQRVQSRGLVEEYTT 292
>gi|427736905|ref|YP_007056449.1| ribulose bisphosphate carboxylase small subunit [Rivularia sp. PCC
7116]
gi|427371946|gb|AFY55902.1| ribulose bisphosphate carboxylase small subunit [Rivularia sp. PCC
7116]
Length = 787
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 174/286 (60%), Positives = 223/286 (77%), Gaps = 2/286 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YI+P F DK+ VHITKN+L+LP V+VPLILGI G KG+GKSFQCELVF KMG+ +S
Sbjct: 4 YISPRFQDKLSVHITKNYLDLPKVRVPLILGIHGRKGEGKSFQCELVFEKMGVEVTHISG 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW PTRE
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPTRE 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
D++G+ GIF D + K+D+ +LVD F Q++DF+ ALR+R+YD+++R++I G++R+
Sbjct: 184 DKVGIIGGIFSEDGLSKQDVEQLVDHFGNQAVDFYSALRSRIYDEQIRRFIQNKGVDRVS 243
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
++VNS P+F++PK L L+E ++V+EQ+ V L ++Y
Sbjct: 244 SQVVNSNNI-PSFQKPKFGLSDLMEVASLMVEEQQRVDNSHLVEEY 288
>gi|158334944|ref|YP_001516116.1| ribulose bisphosphate carboxylase activase [Acaryochloris marina
MBIC11017]
gi|158305185|gb|ABW26802.1| Ribulose bisphosphate carboxylase activase, putative [Acaryochloris
marina MBIC11017]
Length = 416
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 177/292 (60%), Positives = 222/292 (76%), Gaps = 1/292 (0%)
Query: 131 GLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190
G Y++P F+D++ VHITKNF++LP ++VPLILGI G KG+GKSFQCEL+F +MGI P+ M
Sbjct: 2 GYYLSPRFLDRLAVHITKNFMDLPGLRVPLILGIHGRKGEGKSFQCELLFEQMGIEPVRM 61
Query: 191 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 249
SAGELES +AG+P +LIR RYREAA++IK +GKMC L INDLDAGAGRM TTQYTVN Q
Sbjct: 62 SAGELESPDAGDPVRLIRMRYREAAELIKVRGKMCVLLINDLDAGAGRMDQTTQYTVNTQ 121
Query: 250 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 309
+VN TLMNIADNPT+VQLPG Y+ + RVPI+VTGNDFSTLYAPL+RDGRM+KFYW P
Sbjct: 122 LVNGTLMNIADNPTDVQLPGSYDTQPIRRVPILVTGNDFSTLYAPLVRDGRMDKFYWQPN 181
Query: 310 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIER 369
EDR+G+ GIF D + I +LV+ F Q+IDFFGALR+R+YD++VR +I +GI
Sbjct: 182 HEDRLGIVQGIFEPDRLSSSVIEQLVNHFADQAIDFFGALRSRIYDEQVRDFIRNLGIGN 241
Query: 370 IGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEA 421
+ LVNS E + P +TLD L+ G +V EQ+ + LA YLS A
Sbjct: 242 VSTYLVNSPERQVQIQPPALTLDYLINLGEAMVGEQDRLHHAGLAQAYLSGA 293
>gi|359457374|ref|ZP_09245937.1| ribulose bisphosphate carboxylase small chain [Acaryochloris sp.
CCMEE 5410]
Length = 416
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 176/292 (60%), Positives = 222/292 (76%), Gaps = 1/292 (0%)
Query: 131 GLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190
G Y++P F+D++ VHITKNF++LP ++VPLILGI G KG+GKSFQCEL+F +MGI P+ M
Sbjct: 2 GYYLSPRFLDRLAVHITKNFMDLPGLRVPLILGIHGRKGEGKSFQCELLFEQMGIEPVRM 61
Query: 191 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 249
SAGELES +AG+P +LIR RYREAA++IK +GKMC L INDLDAGA RM TTQYTVN Q
Sbjct: 62 SAGELESPDAGDPVRLIRMRYREAAELIKVRGKMCVLLINDLDAGASRMDQTTQYTVNTQ 121
Query: 250 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 309
+VN TLMNIADNPT+VQLPG Y+ + RVPI+VTGNDFSTLYAPL+RDGRM+KFYW P+
Sbjct: 122 LVNGTLMNIADNPTDVQLPGSYDTQPIRRVPILVTGNDFSTLYAPLVRDGRMDKFYWQPS 181
Query: 310 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIER 369
EDR+G+ GIF D + I +LV+ F Q+IDFFGALR+R+YD++VR +I +GI
Sbjct: 182 DEDRLGIVQGIFEPDRLSSSVIEQLVNHFADQAIDFFGALRSRIYDEQVRDFIRNLGIGN 241
Query: 370 IGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEA 421
+ LVNS E + P + LD L+E G +V EQ+ + LA YLS A
Sbjct: 242 VSTYLVNSPERQVQIQPPALALDYLIELGEAMVGEQDRLHHAGLAQAYLSGA 293
>gi|307102907|gb|EFN51173.1| hypothetical protein CHLNCDRAFT_141315 [Chlorella variabilis]
Length = 295
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 196/359 (54%), Positives = 229/359 (63%), Gaps = 83/359 (23%)
Query: 78 DISDDQQDITRGKGMVDTLFQAPMES--GTHYAVMSSYDYISQGLRQYSLDNTLDGLYIA 135
D+SDDQQDI RG+ MVD+LFQ GTH AV+SS +Y+S
Sbjct: 6 DVSDDQQDIARGRDMVDSLFQGFGSGIGGTHNAVLSSTEYLSTA---------------- 49
Query: 136 PAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 195
GK+FQC L + K+GI PI+MSAGEL
Sbjct: 50 -----------------------------------GKTFQCNLAYKKLGIAPIVMSAGEL 74
Query: 196 ESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATL 255
ESGNAGEPAKLIRQRYREA+D+IKKG+MC LFINDLDAGAGRMG TQYTVNNQMVNATL
Sbjct: 75 ESGNAGEPAKLIRQRYREASDVIKKGRMCSLFINDLDAGAGRMGDATQYTVNNQMVNATL 134
Query: 256 MNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIG 315
MNIADNPTNVQLPG+Y EE PRVPI DRIG
Sbjct: 135 MNIADNPTNVQLPGVYKNEEIPRVPI------------------------------DRIG 164
Query: 316 VCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLV 375
VC GIF+ DNV + D+ KLVD FPGQSIDFFGA+RARVYDD+V WI G+E IGKRL+
Sbjct: 165 VCMGIFQHDNVDRADVEKLVDAFPGQSIDFFGAIRARVYDDKVHDWIMGTGVENIGKRLI 224
Query: 376 NSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNG 434
NSKEG TF++P M L L++YG +LV+EQENVKRVQLAD+Y+S AAL ++ ++ G
Sbjct: 225 NSKEGKVTFDKPSMDLGTLMKYGNLLVEEQENVKRVQLADEYMSGAALAGSSGSSLPEG 283
>gi|427419082|ref|ZP_18909265.1| ribulose bisphosphate carboxylase small subunit [Leptolyngbya sp.
PCC 7375]
gi|425761795|gb|EKV02648.1| ribulose bisphosphate carboxylase small subunit [Leptolyngbya sp.
PCC 7375]
Length = 428
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 173/307 (56%), Positives = 236/307 (76%), Gaps = 5/307 (1%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YI+P F++ + VHITKNFL LP VK+PLI GI G KG+GK+FQCELV+ +MG+N + +S
Sbjct: 4 YISPRFLNALAVHITKNFLELPQVKLPLIFGIHGRKGEGKTFQCELVYKRMGVNVVHISG 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+PA+LIR RYREAAD++K +G+M L INDLDAGAGR G TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYREAADLVKIRGEMAVLMINDLDAGAGRFDGMTQYTVNTQLV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
N TLMNIADNPTNVQLPG Y++ PR+PI+VTGNDF+TLYAPL+RDGRM+KFYW P R+
Sbjct: 124 NNTLMNIADNPTNVQLPGSYDETPLPRIPIVVTGNDFATLYAPLVRDGRMQKFYWEPNRD 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
DR+G+ GIF D++ + DI LVDTFP Q+IDF+GALR+++YD+++ +I VG+E +
Sbjct: 184 DRLGIVGGIFSPDDLSRNDIETLVDTFPNQAIDFYGALRSQIYDEQIIDFIHRVGVENVS 243
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDD-A 430
+ +VN+K PP+F++P + L+E G+ LV+EQ ++ + L +Y AL ++ +
Sbjct: 244 RNVVNTKT-PPSFKKPDFRIGHLIEVGQRLVREQRRLQEMGLVQEY--NQALNKVEENRS 300
Query: 431 IKNGSFY 437
NG++Y
Sbjct: 301 NGNGNYY 307
>gi|428210200|ref|YP_007094553.1| ribulose 1,5-bisphosphate carboxylase small subunit
[Chroococcidiopsis thermalis PCC 7203]
gi|428012121|gb|AFY90684.1| ribulose 1,5-bisphosphate carboxylase small subunit
[Chroococcidiopsis thermalis PCC 7203]
Length = 475
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 167/273 (61%), Positives = 219/273 (80%), Gaps = 1/273 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YIAP F++K+ V ITKN+LN+P ++VPLILG+ G KG+GKSFQC+LVF KMGI +S
Sbjct: 4 YIAPRFLEKIAVFITKNYLNIPGIRVPLILGVHGRKGEGKSFQCDLVFEKMGIEITHISG 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+P++L+R RYRE A++I+ +GKMC + INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPSRLLRLRYRETAELIRVRGKMCAIMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
NATLMNIADNPTNVQLPG Y++ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R
Sbjct: 124 NATLMNIADNPTNVQLPGSYDETPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPDRS 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
D++G+ +GI+ D + +I +LVDTF QS+DFF ALR+R+YD+++R +I ++GIE++
Sbjct: 184 DKVGIVAGIYSDDGLSSREIEQLVDTFSNQSVDFFSALRSRIYDEQIRDFIFKIGIEQVS 243
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQE 404
+R+VNS + PP F +PK L +L+E G ++V+E
Sbjct: 244 RRVVNSADRPPEFSKPKFNLSRLIEMGNLMVKE 276
>gi|443316141|ref|ZP_21045597.1| ribulose bisphosphate carboxylase small subunit [Leptolyngbya sp.
PCC 6406]
gi|442784241|gb|ELR94125.1| ribulose bisphosphate carboxylase small subunit [Leptolyngbya sp.
PCC 6406]
Length = 461
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 174/297 (58%), Positives = 230/297 (77%), Gaps = 4/297 (1%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YI+P F+DK+ +HITKN+L+LP+V+VP+ILG+ G KG+GK+FQCELV+ +MG+ + +S
Sbjct: 4 YISPRFLDKLAIHITKNYLSLPDVRVPVILGVHGRKGEGKTFQCELVYERMGVEVVAISG 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+PA+LIR RYREAA++++ +G M L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYREAAELVRVRGVMAVLMINDLDAGAGRFDALTQYTVNTQLV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
N TLMNIADNPTNVQLPG Y+ + RVPII TGNDFSTLY PL+RDGRMEKFYW P R
Sbjct: 124 NNTLMNIADNPTNVQLPGSYDDQPIRRVPIIATGNDFSTLYEPLVRDGRMEKFYWMPDRS 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
DRIG+ +GIF D + I +LVDTF Q++DFFGALRAR+YD++VR +I VG++++
Sbjct: 184 DRIGIVAGIFEPDQLGTAAIEQLVDTFSQQAVDFFGALRARIYDEQVRDFIQSVGLDKVS 243
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDAND 428
+R+VNS E PTF +P TL L+E G+ +V EQ+ ++ ++L D+Y AL + ND
Sbjct: 244 QRVVNS-ETSPTFTRPTFTLSHLIEVGQQMVIEQQWLQEMRLGDQY--NRALREKND 297
>gi|254422770|ref|ZP_05036488.1| ribulose bisphosphate carboxylase, small subunit, putative
[Synechococcus sp. PCC 7335]
gi|196190259|gb|EDX85223.1| ribulose bisphosphate carboxylase, small subunit, putative
[Synechococcus sp. PCC 7335]
Length = 455
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 168/286 (58%), Positives = 226/286 (79%), Gaps = 2/286 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YIAP F++K+ VHITKN+L+LP VKVPLILGI G KG+GK+FQCELVF +MG+ + +S
Sbjct: 4 YIAPRFLNKLAVHITKNYLDLPQVKVPLILGIHGRKGEGKTFQCELVFERMGVEVVHISG 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+PA+LIR RYREAA++++ +G+M L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYREAAELVRVRGRMAVLMINDLDAGAGRFDRMTQYTVNTQLV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
N TLMNIADNPTNVQLPG Y+++ PR+PII TGNDF+TLYAPLIRDGRM+KFYW P+ E
Sbjct: 124 NNTLMNIADNPTNVQLPGSYDEKALPRIPIIATGNDFATLYAPLIRDGRMQKFYWQPSEE 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
DR+G+ G+F D + EDI +LV F Q++DFFGA+R+++YD+++ ++I +VGIE++
Sbjct: 184 DRVGIVGGMFAGDGLSAEDIEQLVKQFKDQAVDFFGAVRSQLYDEQITRFIEQVGIEKVA 243
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
+VN+ + PTF +P TLD L+ G LV+EQ+ V+ + L ++Y
Sbjct: 244 TNVVNTPQK-PTFNRPHFTLDHLVAAGNTLVEEQDRVRTMGLVNEY 288
>gi|254416331|ref|ZP_05030084.1| ribulose bisphosphate carboxylase, small subunit, putative
[Coleofasciculus chthonoplastes PCC 7420]
gi|196176769|gb|EDX71780.1| ribulose bisphosphate carboxylase, small subunit, putative
[Coleofasciculus chthonoplastes PCC 7420]
Length = 447
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 176/286 (61%), Positives = 225/286 (78%), Gaps = 1/286 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YIAP+F DK+ VHITKN+L L V+VPLILGI G KG+GKSFQCELVF +MGI I +S
Sbjct: 9 YIAPSFRDKLAVHITKNYLELEGVRVPLILGIHGRKGEGKSFQCELVFEQMGIGIIHISG 68
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+PA+LIR RYREAA++IK +GKMC L INDLDAG GR TTQYTVN Q+V
Sbjct: 69 GELESPDAGDPARLIRLRYREAAEMIKVQGKMCGLMINDLDAGVGRFDSTTQYTVNTQLV 128
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
+ATLMNIAD+PT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIR+GRMEK+YW P+RE
Sbjct: 129 SATLMNIADHPTDVQLPGSYDANPLHRVPIIVTGNDFSTLYAPLIREGRMEKYYWEPSRE 188
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
+RIG+ GIF D +P+ DI +LVD FP Q+IDFF ALR+R+YD ++ +I +VG++++
Sbjct: 189 ERIGIVGGIFAADGLPRRDIEQLVDQFPDQAIDFFSALRSRIYDQQILHFIHDVGLDQVS 248
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
R+V S E PP FE+P + L+E+G++++ EQ V++ L +Y
Sbjct: 249 FRVVRSTEAPPEFEKPNFDISHLIEFGQVMIGEQRQVEQTGLVREY 294
>gi|86605146|ref|YP_473909.1| ribulose bisphosphate carboxylase/oxygenase activase [Synechococcus
sp. JA-3-3Ab]
gi|86553688|gb|ABC98646.1| ribulose bisphosphate carboxylase/oxygenase activase [Synechococcus
sp. JA-3-3Ab]
Length = 407
Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 172/287 (59%), Positives = 221/287 (77%), Gaps = 1/287 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YI P F+ V +H+TKN L LP+V VPLILGI G KG+GK+FQC L+F +M + + +S
Sbjct: 4 YIPPTFLKVVALHLTKNHLPLPDVPVPLILGIHGRKGEGKTFQCNLIFERMKVYAVHISG 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+PA++IR RYREAA+ I+K G+M L INDLDAGAGR+ TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARMIRLRYREAAEHIRKFGQMAVLMINDLDAGAGRLNSMTQYTVNTQLV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
+ATLMNIADNPTNVQLPG Y+ + PRVPII TGNDFSTLYAPLIRDGRM KFYW P+R
Sbjct: 124 SATLMNIADNPTNVQLPGSYDPKPLPRVPIIATGNDFSTLYAPLIRDGRMRKFYWEPSRT 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
DRI + GIF+ D + E+I +LVD FP Q+IDFFGALRA++YD++V ++I EVG+E I
Sbjct: 184 DRIHIVHGIFQADGLSLEEIERLVDAFPEQAIDFFGALRAQLYDEQVWQFIQEVGLEGIA 243
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
RL+ SKEG P F P+ +L++L++ G L EQ V+ +L+++YL
Sbjct: 244 FRLLKSKEGAPQFPPPRFSLEQLIQAGHQLKAEQHQVEARRLSEEYL 290
>gi|428215450|ref|YP_007088594.1| ribulose bisphosphate carboxylase small subunit [Oscillatoria
acuminata PCC 6304]
gi|428003831|gb|AFY84674.1| ribulose bisphosphate carboxylase small subunit [Oscillatoria
acuminata PCC 6304]
Length = 435
Score = 363 bits (932), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 170/286 (59%), Positives = 220/286 (76%), Gaps = 2/286 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YIAP F++K+ VHITKNFL+LP + PLILGI G KG+GKSFQCELVF +M + I +SA
Sbjct: 4 YIAPRFLNKLAVHITKNFLDLPGINAPLILGIHGHKGEGKSFQCELVFQRMKVQAIHLSA 63
Query: 193 GELESGNAGEPAKLIRQRYREAADII-KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+P++L+R RYREAADII K GK+ L IND+DAGAGR+ TQYTVN Q+V
Sbjct: 64 GELESPDAGDPSRLVRFRYREAADIITKHGKLAVLMINDIDAGAGRVDSGTQYTVNTQLV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
NATLMNIADNPTNVQLPG Y+ E PRVPIIVTGNDF TLYAPL+RDGRM+KFYW P RE
Sbjct: 124 NATLMNIADNPTNVQLPGSYDSEPLPRVPIIVTGNDFGTLYAPLVRDGRMDKFYWEPNRE 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
DR+ + +GIF D + ++ I +LV F GQSIDFF ALRA +YD+++ +I + G ++IG
Sbjct: 184 DRLEIVNGIFTPDGLNRQQIEQLVSKFEGQSIDFFSALRASIYDEQILAFIEQTGFDKIG 243
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
++ NS E +F +P L+ L+E G +V+EQ++++ ++L Y
Sbjct: 244 LKVANSTE-KHSFIKPDFRLEHLIEKGEQMVKEQQHIQELRLVAAY 288
>gi|13569643|gb|AAK31173.1| ribulose-1,5-bisphosphate carboxylase activase [Oryza sativa Indica
Group]
Length = 193
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 163/188 (86%), Positives = 180/188 (95%)
Query: 251 VNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 310
VNATLMNIADNPTNVQLPGMYN+E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR
Sbjct: 1 VNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR 60
Query: 311 EDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERI 370
+DR+GVC GIFRTDNVP EDIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+S+ G+E I
Sbjct: 61 DDRVGVCKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENI 120
Query: 371 GKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDA 430
GKRLVNS+EGPP FEQPKMT++KL+EYG MLV+EQENVKRVQLA++YLSEAALGDAN DA
Sbjct: 121 GKRLVNSREGPPEFEQPKMTIEKLIEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDA 180
Query: 431 IKNGSFYG 438
+K GSFYG
Sbjct: 181 MKTGSFYG 188
>gi|290760300|gb|ADD54590.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1
[Linum usitatissimum]
Length = 178
Score = 350 bits (898), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 163/178 (91%), Positives = 171/178 (96%)
Query: 92 MVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFL 151
MVD+LFQAP +GTHYAVMSSYDYIS+GLR Y DNT+ G YIAPAFMDK+VVHITKNFL
Sbjct: 1 MVDSLFQAPQMAGTHYAVMSSYDYISKGLRTYDFDNTMGGFYIAPAFMDKLVVHITKNFL 60
Query: 152 NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 211
NLPN+KVPLILG+WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY
Sbjct: 61 NLPNIKVPLILGVWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 120
Query: 212 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 269
REA+DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG
Sbjct: 121 REASDIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 178
>gi|388505442|gb|AFK40787.1| unknown [Lotus japonicus]
Length = 187
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 162/187 (86%), Positives = 177/187 (94%)
Query: 250 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 309
MVNATLMNIADNPTNVQLPGMYN+E+NPRVPI+VTGND STLYAPLIRDGRMEKFYWAPT
Sbjct: 1 MVNATLMNIADNPTNVQLPGMYNKEDNPRVPIVVTGNDSSTLYAPLIRDGRMEKFYWAPT 60
Query: 310 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIER 369
REDRIGVC GIF+TDNV +E +V +VDTFPGQSIDFFGALRARVYDDEVRKWIS VG++
Sbjct: 61 REDRIGVCKGIFQTDNVSEEAVVTIVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDL 120
Query: 370 IGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDD 429
IGK+LVNSKEGPP FEQPKMTL+KLLEYG MLVQEQENV+RVQLADKYL+EAALG+ANDD
Sbjct: 121 IGKKLVNSKEGPPVFEQPKMTLEKLLEYGNMLVQEQENVERVQLADKYLNEAALGNANDD 180
Query: 430 AIKNGSF 436
AIK G+F
Sbjct: 181 AIKRGTF 187
>gi|242077492|ref|XP_002448682.1| hypothetical protein SORBIDRAFT_06g031390 [Sorghum bicolor]
gi|241939865|gb|EES13010.1| hypothetical protein SORBIDRAFT_06g031390 [Sorghum bicolor]
Length = 433
Score = 343 bits (881), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 178/347 (51%), Positives = 237/347 (68%), Gaps = 17/347 (4%)
Query: 82 DQQDITRGK--GMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDG-LYIAPAF 138
D ++T G G+VD LF V +DY + R + L G YIAPAF
Sbjct: 90 DNLNVTVGARAGIVDDLFVGNFLGKDSDIV---FDYRQKATRTFEY---LQGDYYIAPAF 143
Query: 139 MDKVVVHITKNFLN--LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196
+DKV HI KN++ L N+K+PLILG+WGGKGQGK+FQ EL+F MG+ P++MSAGELE
Sbjct: 144 LDKVACHIVKNYIGHLLNNIKIPLILGVWGGKGQGKTFQTELIFKAMGVEPVIMSAGELE 203
Query: 197 SGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATL 255
S AGEP +LIR RYR A+ +I+ +GK+ CL INDLDAG GR G TQ TVNNQ+ TL
Sbjct: 204 SEKAGEPGRLIRDRYRTASQVIQNQGKLSCLMINDLDAGVGRFG-NTQMTVNNQIAVGTL 262
Query: 256 MNIADNPTNVQLPGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRI 314
MN+ADNP V + + + + RVPIIVTGNDFSTLYAPLIRDGRMEKFYW PTRED I
Sbjct: 263 MNLADNPNRVSIGQKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPTREDII 322
Query: 315 GVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKR 373
+ G++R D + E++ ++VDTFP Q++DF+GALR+R YD + +W+ E+ G E++ +
Sbjct: 323 SIVHGMYRKDGLSAEEVARVVDTFPNQALDFYGALRSRTYDRAILEWVEEIGGHEQLRAK 382
Query: 374 LVNSKEGP--PTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
L+ K+G PTF PK +L+ L+E G LV+EQE + +L+ +Y+
Sbjct: 383 LLKRKKGEELPTFIAPKPSLEALIESGYSLVKEQELIMNSKLSKEYM 429
>gi|449436220|ref|XP_004135891.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Cucumis sativus]
Length = 426
Score = 340 bits (872), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 163/312 (52%), Positives = 228/312 (73%), Gaps = 9/312 (2%)
Query: 113 YDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFL-NLPNVKVPLILGIWGGKGQG 171
+DY + R + ++ YIAP FMDKVV H+ KNF+ +L +VKVPLILG+WGGKGQG
Sbjct: 113 FDYRQKVTRTF--EHIQGDYYIAPTFMDKVVCHLVKNFIVHLLDVKVPLILGVWGGKGQG 170
Query: 172 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFIND 230
KSFQ EL+F MG+ P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND
Sbjct: 171 KSFQTELIFQAMGVEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMIND 230
Query: 231 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN-PRVPIIVTGNDFS 289
+DAG GR G TQ TVNNQ+V+ TLMN+ADNPT V + + + + R+PII+TGNDFS
Sbjct: 231 IDAGIGRFG-QTQVTVNNQIVSGTLMNLADNPTRVSIGQDWREADILHRIPIILTGNDFS 289
Query: 290 TLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGAL 349
T+YAPLIRDGRMEKFYW P RED + + ++ D + + +V +V+TFP Q++DF+GAL
Sbjct: 290 TIYAPLIRDGRMEKFYWQPNREDIVNIVHRMYEKDGISRAQVVDIVNTFPNQALDFYGAL 349
Query: 350 RARVYDDEVRKWISEV-GIERIGKRLVNSK--EGPPTFEQPKMTLDKLLEYGRMLVQEQE 406
R+R YD + KW+ ++ G+E++G++L+ + E PTF P+ TL+ LL+ G LV+EQ+
Sbjct: 350 RSRTYDSAISKWVDDIGGVEKLGEKLLRRRKSEKLPTFTPPEQTLEALLKAGYSLVKEQQ 409
Query: 407 NVKRVQLADKYL 418
+ +L+ +Y+
Sbjct: 410 LIMETKLSKEYM 421
>gi|224057192|ref|XP_002299165.1| predicted protein [Populus trichocarpa]
gi|222846423|gb|EEE83970.1| predicted protein [Populus trichocarpa]
Length = 428
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 172/335 (51%), Positives = 233/335 (69%), Gaps = 14/335 (4%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDG-LYIAPAFMDKVVVHITKN 149
G+VD+LF V +DY + R + L G YIAP F+DKVV HI KN
Sbjct: 96 GVVDSLFAGNFLGKDSDIV---FDYRQKVTRSFEY---LQGDYYIAPLFLDKVVCHIVKN 149
Query: 150 FL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 208
+L + NVKVPLILGIWGGKGQGKSFQ EL+F +G+ P++MSAGELES AGEP +LIR
Sbjct: 150 YLAHRLNVKVPLILGIWGGKGQGKSFQTELIFQTLGVEPVIMSAGELESERAGEPGRLIR 209
Query: 209 QRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 267
+RYR A+ +++ +GKM CL INDLDAG GR G TQ TVNNQ+V TLMN++DNPT V +
Sbjct: 210 ERYRTASQVVQNQGKMSCLMINDLDAGLGRFG-NTQMTVNNQIVVGTLMNLSDNPTRVSI 268
Query: 268 PGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNV 326
+ + + RVPIIVTGNDFST+YAPLIRDGRMEKFYW P RED + + ++ D +
Sbjct: 269 GQDWRESDITNRVPIIVTGNDFSTIYAPLIRDGRMEKFYWQPNREDIVNIVHRMYEKDGI 328
Query: 327 PKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVNSK--EGPPT 383
++++V +V+ FP Q++DF+GALR+R YD + KW+ ++ GIE +GK+L+ K E P
Sbjct: 329 SRDEVVSIVNKFPNQALDFYGALRSRTYDRSISKWVDDIGGIENLGKQLLRRKKDEKLPE 388
Query: 384 FEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
F P+ T++ LLE G L++EQ+ + +L+ +Y+
Sbjct: 389 FTPPEQTMEALLESGHSLIREQQLIMETKLSKEYM 423
>gi|225443213|ref|XP_002270825.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Vitis vinifera]
Length = 442
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 162/292 (55%), Positives = 215/292 (73%), Gaps = 7/292 (2%)
Query: 133 YIAPAFMDKVVVHITKNFL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191
YIAP FMDKVV HI KN++ +L N VPLILGIWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 147 YIAPVFMDKVVCHIVKNYIAHLLNTNVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMS 206
Query: 192 AGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 250
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 207 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGIGRFG-NTQVTVNNQI 265
Query: 251 VNATLMNIADNPTNVQLPGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 309
TLMN++DNPT V + + + + RVPIIVTGNDFST+YAPLIRDGRM+KFYW PT
Sbjct: 266 AVGTLMNLSDNPTRVSIGQDWRETDITNRVPIIVTGNDFSTIYAPLIRDGRMDKFYWQPT 325
Query: 310 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIE 368
ED I + ++ D + ++ +V++VDTFP Q++DF+GALR+R YD + KW+ ++ G+E
Sbjct: 326 HEDIINIVDRMYEKDGISRDAVVRIVDTFPNQALDFYGALRSRTYDRSISKWVDDIGGVE 385
Query: 369 RIGKRLVNSK--EGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
+G +L+ + E P F PK T+D LLE G L++EQ+ + +L+ +Y+
Sbjct: 386 NLGNKLLRRRKDEKLPVFVPPKQTIDALLESGYSLIKEQQLIMETKLSKEYM 437
>gi|116310848|emb|CAH67790.1| OSIGBa0132E09-OSIGBa0108L24.4 [Oryza sativa Indica Group]
Length = 441
Score = 337 bits (864), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 176/335 (52%), Positives = 230/335 (68%), Gaps = 14/335 (4%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDG-LYIAPAFMDKVVVHITKN 149
G+VD LF V +DY + R + L G YIAP F+DKV HI KN
Sbjct: 109 GIVDDLFVGNFLGKDSDIV---FDYRQKATRTFEY---LQGDYYIAPLFLDKVACHIVKN 162
Query: 150 FL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 208
+L ++ +K+PLILGIWGGKGQGK+FQ EL+F MG+ P++MSAGELES AGEP +LIR
Sbjct: 163 YLAHILTIKIPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGELESEKAGEPGRLIR 222
Query: 209 QRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 267
RYR A+ +I+ +GKM L INDLDAG GR G TQ TVNNQ+V TLMN+ADNPT V +
Sbjct: 223 DRYRTASQVIQNQGKMSVLMINDLDAGVGRFG-NTQMTVNNQIVIGTLMNLADNPTRVSI 281
Query: 268 PGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNV 326
+ + + RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P RED I + ++ D +
Sbjct: 282 GQKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPDREDIINIVHRMYIKDGL 341
Query: 327 PKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVNSKEGP--PT 383
ED+ K+VDTFP Q++DF+GALR+R YD + +W+ E+ G E++ ++L+ K+G PT
Sbjct: 342 SFEDVSKIVDTFPNQALDFYGALRSRTYDRAILQWVEEIGGHEQLNEKLLKRKKGEELPT 401
Query: 384 FEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
F PK T+D L+E G LV+EQE + +L+ +Y+
Sbjct: 402 FIPPKTTVDALIESGDSLVKEQELIMNSKLSKEYM 436
>gi|115461056|ref|NP_001054128.1| Os04g0658300 [Oryza sativa Japonica Group]
gi|38346401|emb|CAE04234.2| OSJNBa0011F23.7 [Oryza sativa Japonica Group]
gi|113565699|dbj|BAF16042.1| Os04g0658300 [Oryza sativa Japonica Group]
Length = 441
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 176/335 (52%), Positives = 230/335 (68%), Gaps = 14/335 (4%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDG-LYIAPAFMDKVVVHITKN 149
G+VD LF V +DY + R + L G YIAP F+DKV HI KN
Sbjct: 109 GIVDDLFVGNFLGKDSDIV---FDYRQKATRTFEY---LQGDYYIAPLFLDKVACHIVKN 162
Query: 150 FL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 208
+L ++ +K+PLILGIWGGKGQGK+FQ EL+F MG+ P++MSAGELES AGEP +LIR
Sbjct: 163 YLAHILTIKIPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGELESEKAGEPGRLIR 222
Query: 209 QRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 267
RYR A+ +I+ +GKM L INDLDAG GR G TQ TVNNQ+V TLMN+ADNPT V +
Sbjct: 223 DRYRTASQVIQNQGKMSVLMINDLDAGVGRFG-NTQMTVNNQIVIGTLMNLADNPTRVSI 281
Query: 268 PGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNV 326
+ + + RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P RED I + ++ D +
Sbjct: 282 GQKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPGREDIINIVHRMYIKDGL 341
Query: 327 PKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVNSKEGP--PT 383
ED+ K+VDTFP Q++DF+GALR+R YD + +W+ E+ G E++ ++L+ K+G PT
Sbjct: 342 SFEDVSKVVDTFPNQALDFYGALRSRTYDRAILQWVEEIGGHEQLNEKLLKRKKGEELPT 401
Query: 384 FEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
F PK T+D L+E G LV+EQE + +L+ +Y+
Sbjct: 402 FIPPKTTVDALIESGDSLVKEQELIMNSKLSKEYM 436
>gi|388517903|gb|AFK47013.1| unknown [Lotus japonicus]
Length = 421
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 172/346 (49%), Positives = 236/346 (68%), Gaps = 16/346 (4%)
Query: 82 DQQDITRGK--GMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLY-IAPAF 138
D +I G+ G++D LF V +DY + R + L G Y IAP F
Sbjct: 78 DNMNIAVGQRAGVIDDLFAGNFLGKDSDIV---FDYRQKATRSFQY---LQGYYYIAPLF 131
Query: 139 MDKVVVHITKNFL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 197
MDKVV HI KN+L +L NVKVPLILGIWGGKGQGK+FQ EL+F MG+ P++MSAGELES
Sbjct: 132 MDKVVCHIAKNYLAHLLNVKVPLILGIWGGKGQGKTFQTELIFHAMGMEPVIMSAGELES 191
Query: 198 GNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLM 256
AGEP +LIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLM
Sbjct: 192 ERAGEPGRLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLM 250
Query: 257 NIADNPTNVQLPGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIG 315
N++DNPT V + + + + R+PIIVTGNDFST+YAPLIRDGRM+KFYW P RED
Sbjct: 251 NLSDNPTRVSVGQDWRESDITNRIPIIVTGNDFSTIYAPLIRDGRMDKFYWQPNREDIQN 310
Query: 316 VCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRL 374
+ ++ D + ++++ ++VDTFP Q++DF+GALR+R YD + KW+ ++ G+E G ++
Sbjct: 311 IVHRMYEKDGISRDEVERIVDTFPNQALDFYGALRSRTYDKSILKWVDDIGGVENFGTKI 370
Query: 375 VNSK--EGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
+ + + P F P+ T+D LLE G L++EQE V +L+ +Y+
Sbjct: 371 LKRRKDQNLPVFIPPEQTVDALLESGYSLIKEQELVMESKLSKEYM 416
>gi|305855727|gb|ADM67704.1| putative rubisco activase [Pieris japonica var. taiwanensis]
Length = 171
Score = 334 bits (856), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 153/170 (90%), Positives = 166/170 (97%)
Query: 108 AVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 167
A+MSSY+YIS GLRQY+ DNT+DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AIMSSYEYISTGLRQYNFDNTVDGFYIAPAFMDKLIVHISKNFMTLPNIKVPLILGIWGG 61
Query: 168 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 277
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT+VQLPGMYN+E+NP
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEDNP 171
>gi|297842049|ref|XP_002888906.1| hypothetical protein ARALYDRAFT_476441 [Arabidopsis lyrata subsp.
lyrata]
gi|297334747|gb|EFH65165.1| hypothetical protein ARALYDRAFT_476441 [Arabidopsis lyrata subsp.
lyrata]
Length = 419
Score = 333 bits (855), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 170/334 (50%), Positives = 230/334 (68%), Gaps = 12/334 (3%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNF 150
GM+D +F V +DY + R S ++ YIAP+F+DKV VHI KN+
Sbjct: 87 GMIDDVFIGDFLGKDSDIV---FDYRQKATR--SFEHLQGDYYIAPSFLDKVAVHIVKNY 141
Query: 151 LNLP-NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 209
L N+K+PLILGIWGGKGQGK+FQ EL+F MG+ P++MSAGELES AGEP +LIR
Sbjct: 142 LAPSLNIKIPLILGIWGGKGQGKTFQTELIFKTMGVEPVIMSAGELESDRAGEPGRLIRD 201
Query: 210 RYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 268
RYR A+ +I+ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN+ADNPT V +
Sbjct: 202 RYRTASQVIQNQGKMSVLMINDIDAGLGRFG-ETQMTVNNQIVVGTLMNLADNPTRVSVG 260
Query: 269 GMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP 327
+ + + RVP+IVTGNDFSTLYAPLIR+GRMEKFYW PTRED + + S ++ D +
Sbjct: 261 QEWREADIVNRVPLIVTGNDFSTLYAPLIREGRMEKFYWQPTREDIVNIVSRMYEKDGIS 320
Query: 328 KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVNSKEGP--PTF 384
++D++ +VD FP Q++DF+GALR+R YD + KW+ E G+E +GK L+ SK+ P F
Sbjct: 321 RKDVISIVDKFPNQALDFYGALRSRTYDRSILKWVDEAGGMETLGKILLRSKKTKEVPQF 380
Query: 385 EQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
P+ T++ LLE G L+ EQ+ + +L+ +Y+
Sbjct: 381 TPPEQTVEALLESGYSLINEQKLIMETKLSKEYM 414
>gi|15219376|ref|NP_177454.1| putative Rubisco activase 2 [Arabidopsis thaliana]
gi|13605706|gb|AAK32846.1|AF361834_1 At1g73110/F3N23_39 [Arabidopsis thaliana]
gi|18700270|gb|AAL77745.1| At1g73110/F3N23_39 [Arabidopsis thaliana]
gi|26452888|dbj|BAC43522.1| unknown protein [Arabidopsis thaliana]
gi|332197294|gb|AEE35415.1| putative Rubisco activase 2 [Arabidopsis thaliana]
Length = 432
Score = 333 bits (855), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 169/334 (50%), Positives = 229/334 (68%), Gaps = 12/334 (3%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNF 150
GM+D +F V +DY + R S ++ YIAP+F+DKV VHI KN+
Sbjct: 100 GMIDDVFIGDFLGKDSDIV---FDYRQKATR--SFEHLQGDYYIAPSFLDKVAVHIVKNY 154
Query: 151 LNLP-NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 209
L N+K+PLILGIWGGKGQGK+FQ EL+F MG+ P++MSAGELES AGEP +LIR
Sbjct: 155 LAPSLNIKIPLILGIWGGKGQGKTFQTELIFKTMGVEPVIMSAGELESDRAGEPGRLIRD 214
Query: 210 RYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 268
RYR A+ +I+ +GKM L IND+DAG GR G TQ TVNNQ+V TLMN+ADNPT V +
Sbjct: 215 RYRTASQVIQNQGKMSVLMINDIDAGLGRFG-ETQMTVNNQIVVGTLMNLADNPTRVSVG 273
Query: 269 GMYNQEEN-PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP 327
+ + + RVP+IVTGNDFSTLYAPLIR+GRMEKFYW PTRED + + S ++ D +
Sbjct: 274 QEWREADMVNRVPLIVTGNDFSTLYAPLIREGRMEKFYWQPTREDIVNIVSRMYEKDGIS 333
Query: 328 KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVNSKEGP--PTF 384
++D++ +VD FP Q++DF+GALR+R YD + KW+ E G+E +GK L+ K+ P F
Sbjct: 334 RKDVISIVDKFPNQALDFYGALRSRTYDRSILKWVDEAGGMETLGKVLLRRKKTQEVPQF 393
Query: 385 EQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
P+ T++ LLE G L+ EQ+ + +L+ +Y+
Sbjct: 394 TAPEQTVEALLESGYSLINEQKLIMETKLSKEYM 427
>gi|305855733|gb|ADM67707.1| putative rubisco activase [Rhododendron mariesii]
Length = 171
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 153/170 (90%), Positives = 164/170 (96%)
Query: 108 AVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 167
A+MSSY+YIS GLRQY+ DN +DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AIMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLIVHISKNFMTLPNIKVPLILGIWGG 61
Query: 168 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 277
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYN+EENP
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENP 171
>gi|168063726|ref|XP_001783820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162664649|gb|EDQ51360.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 458
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 176/348 (50%), Positives = 233/348 (66%), Gaps = 15/348 (4%)
Query: 82 DQQDITRG--KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFM 139
D +IT G GM+D+LF V +++ + D YIAPAFM
Sbjct: 104 DNLNITVGARTGMIDSLFTGDFLGKEADIVFKYRQKVTRSFEHITGD-----YYIAPAFM 158
Query: 140 DKVVVHITKNFLNLP-NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 198
DKVV HI KN+L + KVPLILG+WGGKGQGKSFQ EL+F MGI PI+MSAGE+ES
Sbjct: 159 DKVVTHIVKNYLAAQIDGKVPLILGVWGGKGQGKSFQTELIFKAMGIEPIIMSAGEMESE 218
Query: 199 NAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN 257
AGEP KLIR+RYR A +I +GKM CL INDLDAG GR TQ TVNNQMV TLMN
Sbjct: 219 WAGEPGKLIRERYRAAHLVINNQGKMSCLMINDLDAGIGRFE-NTQMTVNNQMVVGTLMN 277
Query: 258 IADNPTNVQLPGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 316
+ADNP V + + + + RVPIIVTGNDFST++APLIRDGRM+KFYW PTR+D + +
Sbjct: 278 LADNPNRVSVGQAWREADIVNRVPIIVTGNDFSTIWAPLIRDGRMDKFYWQPTRDDLVKI 337
Query: 317 CSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLV 375
+++ D + + DI ++DTFP Q++DF+GALR+R YD V +W++E+ G E+IG +L+
Sbjct: 338 VYQMYKKDGLSEADIGFIIDTFPNQALDFYGALRSRTYDKHVLEWVNEIGGAEQIGPKLL 397
Query: 376 NSKEGP---PTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 420
K+G P F P+ +D L++ G LV+EQ V ++L+D+Y+ +
Sbjct: 398 RRKKGDAPLPEFIAPEQNVDDLIKAGYELVEEQNMVNNMKLSDEYMKK 445
>gi|305855755|gb|ADM67718.1| putative rubisco activase [Rhododendron rubropunctatum]
gi|305855757|gb|ADM67719.1| putative rubisco activase [Rhododendron morii]
gi|305855759|gb|ADM67720.1| putative rubisco activase [Rhododendron pseudochrysanthum]
Length = 171
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 153/170 (90%), Positives = 165/170 (97%)
Query: 108 AVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 167
AVMSSY+YIS GLRQY+ DN +DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AVMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLMVHISKNFMTLPNIKVPLILGIWGG 61
Query: 168 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 277
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT+VQLPGMYN+E+NP
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEDNP 171
>gi|338807894|gb|AEJ07671.1| putative rubisco activase [Rhododendron wiltonii]
Length = 171
Score = 331 bits (849), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 152/170 (89%), Positives = 165/170 (97%)
Query: 108 AVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 167
A+MSSY+YIS GLRQY+ DN +DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AIMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLMVHISKNFMTLPNIKVPLILGIWGG 61
Query: 168 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 277
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT+VQLPGMYN+E+NP
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEDNP 171
>gi|449491096|ref|XP_004158798.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Cucumis sativus]
Length = 427
Score = 331 bits (848), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 162/313 (51%), Positives = 226/313 (72%), Gaps = 10/313 (3%)
Query: 113 YDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFL-NLPNVKVPLILGIWGGKGQG 171
+DY + R + ++ YIAP FMDKVV H+ KNF+ +L +VKVPLILG+WGGKGQG
Sbjct: 113 FDYRQKVTRTF--EHIQGDYYIAPTFMDKVVCHLVKNFIVHLLDVKVPLILGVWGGKGQG 170
Query: 172 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFIND 230
KSFQ EL+F MG+ P++MSAGELES AGEP KLIR+RYR A+ +++ +GKM CL IND
Sbjct: 171 KSFQTELIFQAMGVEPVIMSAGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMIND 230
Query: 231 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN-PRVPIIVTGNDFS 289
+DAG GR G TQ TVNNQ+V+ TLMN+ADNPT V + + + + R+PII+TGNDFS
Sbjct: 231 IDAGIGRF-GQTQVTVNNQIVSGTLMNLADNPTRVSIGQDWREADILHRIPIILTGNDFS 289
Query: 290 TLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQ-SIDFFGA 348
T+YAPLIRDGRMEKFYW P RED + + ++ D + + +V +V+TFP Q + F+GA
Sbjct: 290 TIYAPLIRDGRMEKFYWQPNREDIVNIVHRMYEKDGISRAQVVDIVNTFPNQGNFGFYGA 349
Query: 349 LRARVYDDEVRKWISEV-GIERIGKRLVNSK--EGPPTFEQPKMTLDKLLEYGRMLVQEQ 405
LR+R YD + KW+ ++ G+E++G++L+ + E PTF P+ TL+ LL+ G LV+EQ
Sbjct: 350 LRSRTYDSAISKWVDDIGGVEKLGEKLLRRRKSEKLPTFTPPEQTLEALLKAGYSLVKEQ 409
Query: 406 ENVKRVQLADKYL 418
+ + +L+ +Y+
Sbjct: 410 QLIMETKLSKEYM 422
>gi|305855731|gb|ADM67706.1| putative rubisco activase [Rhododendron ellipticum]
gi|305855735|gb|ADM67708.1| putative rubisco activase [Rhododendron nakaharae]
gi|305855737|gb|ADM67709.1| putative rubisco activase [Rhododendron noriakianum]
gi|305855739|gb|ADM67710.1| putative rubisco activase [Rhododendron kanehirai]
gi|305855741|gb|ADM67711.1| putative rubisco activase [Rhododendron simsii]
gi|305855743|gb|ADM67712.1| putative rubisco activase [Rhododendron oldhamii]
gi|305855745|gb|ADM67713.1| putative rubisco activase [Rhododendron rubropilosum]
gi|338807888|gb|AEJ07668.1| putative rubisco activase [Rhododendron simsii]
gi|338807892|gb|AEJ07670.1| putative rubisco activase [Rhododendron seniavinii]
gi|338807896|gb|AEJ07672.1| putative rubisco activase [Rhododendron simsii]
gi|338807898|gb|AEJ07673.1| putative rubisco activase [Rhododendron scabrum]
Length = 171
Score = 330 bits (847), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 152/170 (89%), Positives = 164/170 (96%)
Query: 108 AVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 167
A+MSSY+YIS GLRQY+ DN +DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AIMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLIVHISKNFMTLPNIKVPLILGIWGG 61
Query: 168 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 277
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYN+E+NP
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEDNP 171
>gi|356550687|ref|XP_003543716.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Glycine max]
Length = 428
Score = 330 bits (847), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 172/346 (49%), Positives = 236/346 (68%), Gaps = 16/346 (4%)
Query: 82 DQQDITRGK--GMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDG-LYIAPAF 138
D +I G+ G++D+LF V +DY + R + L G YIAP F
Sbjct: 85 DNMNIAVGQRAGVIDSLFAGNFLGKDSDIV---FDYRQKVTRSFQY---LQGDYYIAPLF 138
Query: 139 MDKVVVHITKNFL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 197
MDKVV HI KN+L + N KVPLILGIWGGKGQGKSFQ EL+F MGI P++MSAGELES
Sbjct: 139 MDKVVCHIVKNYLARVLNTKVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMSAGELES 198
Query: 198 GNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLM 256
AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+V TLM
Sbjct: 199 ERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQIVVGTLM 257
Query: 257 NIADNPTNVQLPGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIG 315
N++DNPT V + + + + R+PIIVTGNDFSTLYAPLIRDGRM+KFYW P +ED +
Sbjct: 258 NLSDNPTRVSVGQDWRESDVTNRIPIIVTGNDFSTLYAPLIRDGRMDKFYWQPNQEDILN 317
Query: 316 VCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRL 374
+ ++ D++ ++++ ++V+TFP Q++DF+GALR+R YD + KWI ++ G+E G +L
Sbjct: 318 IVHRMYEKDSISRDEVERVVNTFPNQALDFYGALRSRTYDRSILKWIDDIGGVENFGNKL 377
Query: 375 VNSK--EGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
+ + + P F P+ T+D LLE G L++EQ + +L+ +Y+
Sbjct: 378 LKRRKDQSLPVFIPPEQTVDALLESGYSLIKEQRLIMETKLSKEYM 423
>gi|338807890|gb|AEJ07669.1| putative rubisco activase [Rhododendron chihsinianum]
Length = 171
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 152/170 (89%), Positives = 164/170 (96%)
Query: 108 AVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 167
A+MSSY+YIS GLRQY+ DN +DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AIMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLMVHISKNFMTLPNIKVPLILGIWGG 61
Query: 168 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 277
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYN+E+NP
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEDNP 171
>gi|71834884|gb|AAZ41846.1| Rubisco activase 2 [Mesembryanthemum crystallinum]
Length = 456
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 167/346 (48%), Positives = 235/346 (67%), Gaps = 16/346 (4%)
Query: 82 DQQDITRGK--GMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDG-LYIAPAF 138
D +IT G G++D LF V +DY + R + L G YIAP F
Sbjct: 113 DNTNITVGARPGVIDDLFTGNFLGRDSDIV---FDYRQKVTRSFEY---LRGDYYIAPVF 166
Query: 139 MDKVVVHITKNFL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 197
+D+VV HI KNF+ +L NVKVPLILGIWGGKGQGK+FQ EL+F MG+ P++MSAGE+ES
Sbjct: 167 LDQVVCHIVKNFMAHLLNVKVPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGEMES 226
Query: 198 GNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLM 256
AGEP +LIR+RYR A+ +++ GK+ CL INDLDAG GR G TQ TVNNQ TLM
Sbjct: 227 EKAGEPGRLIRERYRAASQVVQNHGKLSCLMINDLDAGIGRFG-NTQVTVNNQTAAGTLM 285
Query: 257 NIADNPTNVQLPGMYNQEENP-RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIG 315
N+ADNPT V + + + + R+P+IVTGNDFST+YAPLIRDGRM+KFYW PT +D +
Sbjct: 286 NLADNPTRVSIGQKWRENDTTHRIPVIVTGNDFSTIYAPLIRDGRMDKFYWQPTHDDIVN 345
Query: 316 VCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRL 374
+ ++ D + +++V +V+TFP Q++DF+GA+R+R YD V KW+ ++ GI+ +G +L
Sbjct: 346 IVHRMYEKDGISWDEVVSIVNTFPNQALDFYGAMRSRTYDRSVLKWVDDIGGIDNLGAKL 405
Query: 375 VNSKEGP--PTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
+ ++G P F P+ ++ LLE G L++EQ+ + + +LA +Y+
Sbjct: 406 LQLRKGDELPVFVPPEQNVEALLESGYSLLREQQLINKTKLAKEYM 451
>gi|305855753|gb|ADM67717.1| putative rubisco activase [Rhododendron hyperythrum]
Length = 171
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 152/169 (89%), Positives = 164/169 (97%)
Query: 108 AVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 167
AVMSSY+YIS GLRQY+ DN +DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AVMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLMVHISKNFMTLPNIKVPLILGIWGG 61
Query: 168 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 276
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT+VQLPGMYN+E+N
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTSVQLPGMYNKEDN 170
>gi|305855751|gb|ADM67716.1| putative rubisco activase [Rhododendron formosanum]
Length = 171
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 152/170 (89%), Positives = 164/170 (96%)
Query: 108 AVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 167
AVMSSY+YIS GLRQY+ DN +DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AVMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLMVHISKNFMTLPNIKVPLILGIWGG 61
Query: 168 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 277
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT+VQLPGM N+E+NP
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTSVQLPGMNNKEDNP 171
>gi|305855747|gb|ADM67714.1| putative rubisco activase [Rhododendron breviperulatum]
Length = 171
Score = 328 bits (840), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 151/170 (88%), Positives = 163/170 (95%)
Query: 108 AVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 167
A+MSSY+YIS GLRQY+ DN +DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AIMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLIVHISKNFMTLPNIKVPLILGIWGG 61
Query: 168 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 277
INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLP MYN+E+NP
Sbjct: 122 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPCMYNKEDNP 171
>gi|218195741|gb|EEC78168.1| hypothetical protein OsI_17750 [Oryza sativa Indica Group]
Length = 456
Score = 327 bits (839), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 176/350 (50%), Positives = 230/350 (65%), Gaps = 29/350 (8%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDG-LYIAPAFMDKVVVHITKN 149
G+VD LF V +DY + R + L G YIAP F+DKV HI KN
Sbjct: 109 GIVDDLFVGNFLGKDSDIV---FDYRQKATRTFEY---LQGDYYIAPLFLDKVACHIVKN 162
Query: 150 FL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 208
+L ++ +K+PLILGIWGGKGQGK+FQ EL+F MG+ P++MSAGELES AGEP +LIR
Sbjct: 163 YLAHILTIKIPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGELESEKAGEPGRLIR 222
Query: 209 QRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 267
RYR A+ +I+ +GKM L INDLDAG GR G TQ TVNNQ+V TLMN+ADNPT V +
Sbjct: 223 DRYRTASQVIQNQGKMSVLMINDLDAGVGRFG-NTQMTVNNQIVIGTLMNLADNPTRVSI 281
Query: 268 PGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNV 326
+ + + RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P RED I + ++ D +
Sbjct: 282 GQKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPDREDIINIVHRMYIKDGL 341
Query: 327 PKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK---------------WISEV-GIERI 370
ED+ K+VDTFP Q++DF+GALR+R YD + + W+ E+ G E++
Sbjct: 342 SFEDVSKIVDTFPNQALDFYGALRSRTYDRAILQLLKMYFFANTVEDVLWVEEIGGHEQL 401
Query: 371 GKRLVNSKEGP--PTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
++L+ K+G PTF PK T+D L+E G LV+EQE + +L+ +Y+
Sbjct: 402 NEKLLKRKKGEELPTFIPPKTTVDALIESGDSLVKEQELIMNSKLSKEYM 451
>gi|222629697|gb|EEE61829.1| hypothetical protein OsJ_16474 [Oryza sativa Japonica Group]
Length = 456
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 176/350 (50%), Positives = 230/350 (65%), Gaps = 29/350 (8%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDG-LYIAPAFMDKVVVHITKN 149
G+VD LF V +DY + R + L G YIAP F+DKV HI KN
Sbjct: 109 GIVDDLFVGNFLGKDSDIV---FDYRQKATRTFEY---LQGDYYIAPLFLDKVACHIVKN 162
Query: 150 FL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 208
+L ++ +K+PLILGIWGGKGQGK+FQ EL+F MG+ P++MSAGELES AGEP +LIR
Sbjct: 163 YLAHILTIKIPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMSAGELESEKAGEPGRLIR 222
Query: 209 QRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 267
RYR A+ +I+ +GKM L INDLDAG GR G TQ TVNNQ+V TLMN+ADNPT V +
Sbjct: 223 DRYRTASQVIQNQGKMSVLMINDLDAGVGRFG-NTQMTVNNQIVIGTLMNLADNPTRVSI 281
Query: 268 PGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNV 326
+ + + RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P RED I + ++ D +
Sbjct: 282 GQKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPGREDIINIVHRMYIKDGL 341
Query: 327 PKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK---------------WISEV-GIERI 370
ED+ K+VDTFP Q++DF+GALR+R YD + + W+ E+ G E++
Sbjct: 342 SFEDVSKVVDTFPNQALDFYGALRSRTYDRAILQLLKMYFFANTVEDVLWVEEIGGHEQL 401
Query: 371 GKRLVNSKEGP--PTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
++L+ K+G PTF PK T+D L+E G LV+EQE + +L+ +Y+
Sbjct: 402 NEKLLKRKKGEELPTFIPPKTTVDALIESGDSLVKEQELIMNSKLSKEYM 451
>gi|305855729|gb|ADM67705.1| putative rubisco activase [Rhododendron ovatum]
Length = 171
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 150/170 (88%), Positives = 162/170 (95%)
Query: 108 AVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 167
A+MSSY+YIS GLRQY+ DN +DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AIMSSYEYISTGLRQYNFDNNMDGFYIAPAFMDKLMVHISKNFMTLPNIKVPLILGIWGG 61
Query: 168 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227
KGQGKSFQCELVFAKMGINPIMMSAGELESG AGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGKAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 277
INDL+AGAGRMGGTTQYTVNNQMVNATLMNIA NPT VQLPGMYN+EENP
Sbjct: 122 INDLEAGAGRMGGTTQYTVNNQMVNATLMNIAHNPTCVQLPGMYNKEENP 171
>gi|298204740|emb|CBI25238.3| unnamed protein product [Vitis vinifera]
Length = 440
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 158/292 (54%), Positives = 212/292 (72%), Gaps = 9/292 (3%)
Query: 133 YIAPAFMDKVVVHITKNFL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191
YIAP FM + HI KN++ +L N VPLILGIWGGKGQGKSFQ EL+F MGI P++MS
Sbjct: 147 YIAPVFM--AMCHIVKNYIAHLLNTNVPLILGIWGGKGQGKSFQTELIFQAMGIEPVIMS 204
Query: 192 AGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 250
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 205 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGIGRFG-NTQVTVNNQI 263
Query: 251 VNATLMNIADNPTNVQLPGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 309
TLMN++DNPT V + + + + RVPIIVTGNDFST+YAPLIRDGRM+KFYW PT
Sbjct: 264 AVGTLMNLSDNPTRVSIGQDWRETDITNRVPIIVTGNDFSTIYAPLIRDGRMDKFYWQPT 323
Query: 310 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIE 368
ED I + ++ D + ++ +V++VDTFP Q++DF+GALR+R YD + KW+ ++ G+E
Sbjct: 324 HEDIINIVDRMYEKDGISRDAVVRIVDTFPNQALDFYGALRSRTYDRSISKWVDDIGGVE 383
Query: 369 RIGKRLVNSK--EGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
+G +L+ + E P F PK T+D LLE G L++EQ+ + +L+ +Y+
Sbjct: 384 NLGNKLLRRRKDEKLPVFVPPKQTIDALLESGYSLIKEQQLIMETKLSKEYM 435
>gi|357166474|ref|XP_003580722.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Brachypodium distachyon]
Length = 437
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 167/313 (53%), Positives = 218/313 (69%), Gaps = 11/313 (3%)
Query: 113 YDYISQGLRQYSLDNTLDG-LYIAPAFMDKVVVHITKNFL-NLPNVKVPLILGIWGGKGQ 170
+DY + R++ L G YIAP+F+DKV HI KN+L N N+KVPLILG+WGGKGQ
Sbjct: 124 FDYRQKVTRKFEY---LQGDYYIAPSFLDKVACHIVKNYLANNLNIKVPLILGVWGGKGQ 180
Query: 171 GKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFIN 229
GK+FQ EL+F MG+ P++MSAGELES AGEP +LIR RYR A+ +I+ +GKM CL IN
Sbjct: 181 GKTFQTELIFKAMGVEPVIMSAGELESERAGEPGRLIRDRYRTASQVIQNQGKMSCLMIN 240
Query: 230 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE-NPRVPIIVTGNDF 288
DLDAG GR G TQ TVNNQ+V TLMN+ADNPT V + + + + RVPII TGNDF
Sbjct: 241 DLDAGVGRFG-NTQMTVNNQIVVGTLMNLADNPTRVSIGQKWRESDITHRVPIIATGNDF 299
Query: 289 STLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGA 348
STLYAPLIRDGRMEKFYW P RED I + ++ D + E++ ++VDTFP Q++DF+GA
Sbjct: 300 STLYAPLIRDGRMEKFYWQPDREDIINIVHRMYMKDGLSFEEVSRIVDTFPNQALDFYGA 359
Query: 349 LRARVYDDEVRKWISEVG---IERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQ 405
LR+R YD + +W++++G +E PTF PK TLD L+E G LV+EQ
Sbjct: 360 LRSRTYDQAILQWVNDIGGYEQLGEKLLKKKKREKLPTFIPPKPTLDALIESGDSLVKEQ 419
Query: 406 ENVKRVQLADKYL 418
E + +L+ +Y+
Sbjct: 420 ELIMNSKLSKEYM 432
>gi|388512327|gb|AFK44225.1| unknown [Medicago truncatula]
Length = 418
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 155/292 (53%), Positives = 212/292 (72%), Gaps = 7/292 (2%)
Query: 133 YIAPAFMDKVVVHITKNFL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191
YIAP FMDKVV HITKN+L +L N KVPLILGIWGGKGQGK+FQ EL+F MG+ P++MS
Sbjct: 123 YIAPLFMDKVVTHITKNYLSHLLNAKVPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMS 182
Query: 192 AGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 250
AGELES NAGEP +LIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 183 AGELESENAGEPGRLIRERYRTASKVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 241
Query: 251 VNATLMNIADNPTNVQLPGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 309
V TLMN+ DNPT V + + + + R+PIIVTGND ST+YAPLIRDGRM+KFYW P
Sbjct: 242 VVGTLMNLCDNPTRVSIGQDWREADVTNRIPIIVTGNDLSTIYAPLIRDGRMDKFYWQPN 301
Query: 310 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIE 368
+ED + + ++ D + ++++ K+V TFP Q++DF+GALR+R YD + KW+ ++ G E
Sbjct: 302 QEDILNIVQRMYEKDGISRDEVEKVVKTFPNQALDFYGALRSRTYDRSILKWVDDIGGAE 361
Query: 369 RIGKRLVNSK--EGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
+ + + + P F P+ T+D LLE G L++EQ+ + +L+ +Y+
Sbjct: 362 SFTSKFLKRRKDQNLPVFIPPEQTIDALLESGYSLLKEQQLIMETKLSKEYM 413
>gi|305855749|gb|ADM67715.1| putative rubisco activase [Rhododendron kawakamii]
Length = 171
Score = 320 bits (820), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 148/170 (87%), Positives = 161/170 (94%)
Query: 108 AVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 167
AV+SSY +S GLRQY+ DN +DG YIAPAFMDK++VHI+KNF+ LPN+KVPLILGIWGG
Sbjct: 2 AVLSSYQNLSTGLRQYNFDNNMDGFYIAPAFMDKLIVHISKNFMTLPNIKVPLILGIWGG 61
Query: 168 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227
KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMCCLF
Sbjct: 62 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLF 121
Query: 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 277
INDLDAGAGRMGGTTQ+TVNNQMVNATLMNIADNPT VQLPG YN+E+NP
Sbjct: 122 INDLDAGAGRMGGTTQFTVNNQMVNATLMNIADNPTCVQLPGRYNKEDNP 171
>gi|255543431|ref|XP_002512778.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative [Ricinus communis]
gi|223547789|gb|EEF49281.1| Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast
precursor, putative [Ricinus communis]
Length = 428
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 154/292 (52%), Positives = 212/292 (72%), Gaps = 8/292 (2%)
Query: 133 YIAPAFMDKVVVHITKNFL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191
YIAP F+ ++ HI KN++ +L NVKVPLILGIWGGKGQGKSFQ ELVF MGI P++MS
Sbjct: 134 YIAPVFL-VMICHIVKNYIAHLLNVKVPLILGIWGGKGQGKSFQTELVFQAMGIEPVIMS 192
Query: 192 AGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 250
AGELES AGEP KLIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 193 AGELESERAGEPGKLIRERYRTASQVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 251
Query: 251 VNATLMNIADNPTNVQLPGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 309
V TLMN+ DNPT V + + + R+PIIVTGNDFST+YAPLIRDGRMEKF+W P
Sbjct: 252 VVGTLMNLVDNPTRVSTGQDWRESDITNRIPIIVTGNDFSTIYAPLIRDGRMEKFFWQPN 311
Query: 310 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIE 368
+ED + + ++ D + ++++V +V TFP Q++DF+GALR+R YD + KWI ++ G+E
Sbjct: 312 QEDIVNIVHRMYEKDGISRDEVVSIVKTFPNQALDFYGALRSRTYDMSISKWIDDIGGVE 371
Query: 369 RIGKRLVNSK--EGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
+G +L+ + E P + P+ T++ L E G L++EQ+ + +L+ +Y+
Sbjct: 372 NLGNKLLKRRKNETLPVYTPPEQTVEALFESGYSLIREQQLIMETKLSKEYM 423
>gi|159885646|dbj|BAF93200.1| RuBisCO activase [Hordeum vulgare]
Length = 158
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 147/158 (93%), Positives = 153/158 (96%)
Query: 176 CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 235
CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGA
Sbjct: 1 CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADMIKKGKMCCLFINDLDAGA 60
Query: 236 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPL 295
GRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPGMYN+EENPRVPI+VTGNDFSTLYAPL
Sbjct: 61 GRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKEENPRVPIVVTGNDFSTLYAPL 120
Query: 296 IRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVK 333
IRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E +VK
Sbjct: 121 IRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVK 158
>gi|307108081|gb|EFN56322.1| hypothetical protein CHLNCDRAFT_144763 [Chlorella variabilis]
Length = 434
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 167/351 (47%), Positives = 223/351 (63%), Gaps = 30/351 (8%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSL---DNTLDGLYIAPAFMDKVVVHIT 147
GM+D++F T + D LR Y +N + YIAP F++K+ +HI
Sbjct: 80 GMIDSIF-------TGNVLGHKSDIADGSLRTYEFRTYNNIVGDYYIAPRFLEKIALHIA 132
Query: 148 KNFLNL-----PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 202
KNFL +VPLILGIWGGKGQGK+FQ EL F K+G+ PI+MSAGELE+ AG
Sbjct: 133 KNFLLEFGALDSATRVPLILGIWGGKGQGKTFQTELCFKKLGVEPIIMSAGELENEWAGV 192
Query: 203 PAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADN 261
P KLIR+RYR AA++ K GK+ CL INDLDAG G TQ TVNNQMV TLMNI DN
Sbjct: 193 PGKLIRERYRRAAEVSKVHGKLSCLMINDLDAGIGHFE-NTQITVNNQMVVGTLMNICDN 251
Query: 262 PTNVQL-PGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGI 320
PT + + G + R+PIIVTGNDFST++APL+RDGRM+KFYW PT ED +G+ +
Sbjct: 252 PTRISIGQGWMENDVTRRIPIIVTGNDFSTIFAPLVRDGRMDKFYWQPTEEDLVGILHQM 311
Query: 321 FRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIE-----------R 369
++ D + + D+ L+ FPGQ++DFFGALR+ YD ++R+WI + I
Sbjct: 312 YKDDGLSESDMAALLRAFPGQTLDFFGALRSSTYDGQIRQWIKQDVIHGEIAEDNQNMRE 371
Query: 370 IGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 420
+G+RL+ +E P FE +TL L+E GR L EQ+ V ++L+D+YL +
Sbjct: 372 LGRRLLR-QEDLPQFEPVDLTLLMLMEEGRRLQAEQDMVNSMRLSDEYLKK 421
>gi|117661805|gb|ABK55669.1| chloroplast rubisco activase [Cucumis sativus]
Length = 150
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 145/150 (96%), Positives = 150/150 (100%)
Query: 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 221
LG+WGGKGQG+SFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG
Sbjct: 1 LGVWGGKGQGRSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 60
Query: 222 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 281
KMCCLFINDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPI
Sbjct: 61 KMCCLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPI 120
Query: 282 IVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
IVTGNDFSTLYAPLIRDGRM+KFYWAPTRE
Sbjct: 121 IVTGNDFSTLYAPLIRDGRMDKFYWAPTRE 150
>gi|384253471|gb|EIE26946.1| hypothetical protein COCSUDRAFT_11792, partial [Coccomyxa
subellipsoidea C-169]
Length = 404
Score = 308 bits (788), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 157/330 (47%), Positives = 216/330 (65%), Gaps = 24/330 (7%)
Query: 118 QGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFL-----NLPNVKVPLILGIWGGKGQGK 172
+G S N + Y++P F+D V +HI KN++ P+ +VPLILGIWG KGQGK
Sbjct: 67 RGWEFRSFANIVGDYYVSPRFLDAVAMHIVKNWMVDNGAFDPSHRVPLILGIWGPKGQGK 126
Query: 173 SFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDL 231
+FQ EL F K+GI P++MSAGELES AG P +LIR RYR AA++ K +G++ CL INDL
Sbjct: 127 TFQTELTFKKLGIEPVVMSAGELESEWAGAPGRLIRDRYRRAAEVAKVRGRLPCLMINDL 186
Query: 232 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE-NPRVPIIVTGNDFST 290
DAG G + Q TVNNQMV+ TLMN+ DNP V + ++ + RVPIIVTGNDFST
Sbjct: 187 DAGVG-IQENVQRTVNNQMVSGTLMNLCDNPNRVSVFQVWRDSDLVQRVPIIVTGNDFST 245
Query: 291 LYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALR 350
L+APL+RDGRM KFYW P R D + + +++ D + ED L+DTFPGQS+DFFGALR
Sbjct: 246 LFAPLVRDGRMAKFYWEPDRIDLLNILHQMYKEDGLSVEDTQTLLDTFPGQSLDFFGALR 305
Query: 351 ARVYDDEVRKWISE-----------VGIERIGKRLVNS-----KEGPPTFEQPKMTLDKL 394
A YD+++R+WI E + + KRL++ ++ P+FE + L+ L
Sbjct: 306 AATYDNQIRRWIKEEVVKADITDEDANMRELSKRLIDHMHVVRRKDLPSFEPVDLKLEDL 365
Query: 395 LEYGRMLVQEQENVKRVQLADKYLSEAALG 424
L+ G L +EQENV R++L+++Y+ + G
Sbjct: 366 LKEGHRLAEEQENVNRLKLSEEYMKNSGGG 395
>gi|302769017|ref|XP_002967928.1| hypothetical protein SELMODRAFT_88296 [Selaginella moellendorffii]
gi|300164666|gb|EFJ31275.1| hypothetical protein SELMODRAFT_88296 [Selaginella moellendorffii]
Length = 421
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 162/345 (46%), Positives = 228/345 (66%), Gaps = 14/345 (4%)
Query: 82 DQQDITRG--KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFM 139
D +IT G +GM+D++F V + +++ D YIAPAF+
Sbjct: 74 DNMNITVGARQGMIDSVFVGDFLGKEADIVFAYRQKVTRSFEHLQGD-----YYIAPAFL 128
Query: 140 DKVVVHITKNFL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 198
V+ HI KN++ + VPLILG+WGGKGQGK+FQ EL+F MG+ P++MSAGE+ES
Sbjct: 129 --VLTHIVKNYVAEQLDTSVPLILGVWGGKGQGKTFQTELIFKAMGVEPVIMSAGEMESE 186
Query: 199 NAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN 257
AGEP +LIR RYR AA ++K +GK+ CL IND+DAG GR TQ TVNNQ+V TLMN
Sbjct: 187 RAGEPGRLIRDRYRTAAQVVKNQGKLSCLMINDIDAGIGRFE-NTQMTVNNQIVVGTLMN 245
Query: 258 IADNPTNVQLPGMYNQEEN-PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 316
+ADNPT V + + + + RVPIIVTGNDFSTL+APLIRDGRM+KFYW P+RED I +
Sbjct: 246 LADNPTQVSVGQDWREGDVIKRVPIIVTGNDFSTLWAPLIRDGRMDKFYWQPSREDLINI 305
Query: 317 CSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI-SEVGIERIGKRLV 375
++ D + + D+ +VD FP Q++DF+GAL++R D+E+ KW+ S G E++ +
Sbjct: 306 VYRMYSKDGLSRVDVETIVDKFPNQALDFYGALKSRACDEELWKWLESNGGPEKLNEIFR 365
Query: 376 NSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 420
SK+ F P+ TL LL+ G LV+EQ+ V +++L+D+Y+ +
Sbjct: 366 QSKKKTIDFNPPEQTLTSLLKAGTSLVEEQKMVTKMRLSDEYMKK 410
>gi|302761150|ref|XP_002963997.1| hypothetical protein SELMODRAFT_82367 [Selaginella moellendorffii]
gi|300167726|gb|EFJ34330.1| hypothetical protein SELMODRAFT_82367 [Selaginella moellendorffii]
Length = 421
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 162/345 (46%), Positives = 227/345 (65%), Gaps = 14/345 (4%)
Query: 82 DQQDITRG--KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFM 139
D +IT G +GM+D +F V + +++ D YIAPAF+
Sbjct: 74 DNMNITVGARQGMIDNVFVGDFLGKEADIVFAYRQKVTRSFEHLQGD-----YYIAPAFL 128
Query: 140 DKVVVHITKNFL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 198
V+ HI KN++ + VPLILG+WGGKGQGK+FQ EL+F MG+ P++MSAGE+ES
Sbjct: 129 --VLTHIVKNYVAEQLDTSVPLILGVWGGKGQGKTFQTELIFKAMGVEPVIMSAGEMESE 186
Query: 199 NAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN 257
AGEP +LIR RYR AA ++K +GK+ CL IND+DAG GR TQ TVNNQ+V TLMN
Sbjct: 187 RAGEPGRLIRDRYRTAAQVVKNQGKLSCLMINDIDAGIGRFE-NTQMTVNNQIVVGTLMN 245
Query: 258 IADNPTNVQLPGMYNQEEN-PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV 316
+ADNPT V + + + + RVPIIVTGNDFSTL+APLIRDGRM+KFYW P+RED I +
Sbjct: 246 LADNPTQVSVGQDWREGDVIKRVPIIVTGNDFSTLWAPLIRDGRMDKFYWQPSREDLINI 305
Query: 317 CSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI-SEVGIERIGKRLV 375
++ D + + D+ +VD FP Q++DF+GAL++R D+E+ KW+ S G E++ +
Sbjct: 306 VYRMYSKDGLSRVDVETIVDKFPNQALDFYGALKSRACDEELWKWLESNGGPEKLNEIFR 365
Query: 376 NSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 420
SK+ F P+ TL LL+ G LV+EQ+ V +++L+D+Y+ +
Sbjct: 366 QSKKKTIDFNPPEQTLTSLLKAGTSLVEEQKMVTKMRLSDEYMKK 410
>gi|358346465|ref|XP_003637288.1| Ribulose bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
gi|355503223|gb|AES84426.1| Ribulose bisphosphate carboxylase/oxygenase activase [Medicago
truncatula]
Length = 459
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 155/333 (46%), Positives = 212/333 (63%), Gaps = 48/333 (14%)
Query: 133 YIAPAFMDKVVVHITKNFL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191
YIAP FMDKVV HITKN+L +L N KVPLILGIWGGKGQGK+FQ EL+F MG+ P++MS
Sbjct: 123 YIAPLFMDKVVTHITKNYLSHLLNAKVPLILGIWGGKGQGKTFQTELIFRAMGVEPVIMS 182
Query: 192 AGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQM 250
AGELES NAGEP +LIR+RYR A+ +++ +GKM CL IND+DAG GR G TQ TVNNQ+
Sbjct: 183 AGELESENAGEPGRLIRERYRTASKVVQNQGKMSCLMINDIDAGLGRFG-NTQMTVNNQI 241
Query: 251 VNATLMNIADNPTNVQLPGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 309
V TLMN+ DNPT V + + + + R+PIIVTGND ST+YAPLIRDGRM+KFYW P
Sbjct: 242 VVGTLMNLCDNPTRVSIGQDWREADVTNRIPIIVTGNDLSTIYAPLIRDGRMDKFYWQPN 301
Query: 310 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK--------- 360
+ED + + ++ D + ++++ K+V TFP Q++DF+GALR+R YD + K
Sbjct: 302 QEDILNIVQRMYEKDGISRDEVEKVVKTFPNQALDFYGALRSRTYDRSILKGVELEEKPL 361
Query: 361 --------------------------------WISEV-GIERIGKRLVNSK--EGPPTFE 385
W+ ++ G E + + + + P F
Sbjct: 362 SKESPVSYLLCTSNAVGITHTDRLIPQHLPTPWVDDIGGAESFASKFLKRRKDQNLPVFI 421
Query: 386 QPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
P+ T+D LLE G L++EQ+ + +L+ +Y+
Sbjct: 422 PPEQTIDALLESGYSLLKEQQLIMETKLSKEYM 454
>gi|282898324|ref|ZP_06306315.1| AAA ATPase, central region protein [Raphidiopsis brookii D9]
gi|281196855|gb|EFA71760.1| AAA ATPase, central region protein [Raphidiopsis brookii D9]
Length = 362
Score = 300 bits (769), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 140/236 (59%), Positives = 183/236 (77%), Gaps = 1/236 (0%)
Query: 183 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGT 241
MG+ ++S GELES +AG+PA+LIR RYRE A+++K +GKMC L INDLDAGAGR
Sbjct: 1 MGVGVTLISGGELESPDAGDPARLIRLRYRETAELVKVRGKMCVLMINDLDAGAGRFDEG 60
Query: 242 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM 301
TQYTVN Q+VNATLMNIAD+PT+VQLPG Y+ + RVPIIVTGNDFSTLYAPLIRDGRM
Sbjct: 61 TQYTVNTQLVNATLMNIADSPTDVQLPGSYDAKPIRRVPIIVTGNDFSTLYAPLIRDGRM 120
Query: 302 EKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 361
EKFYW P +D++G+ GIF D + +I +LV+TFP QSIDFF ALR+R+YD+++R +
Sbjct: 121 EKFYWEPNHDDKVGIVGGIFAEDGLSPVEIEQLVNTFPHQSIDFFSALRSRIYDEQIRDF 180
Query: 362 ISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
I E+G +R+ R+VNS E PP F++P+ TL L+E G ++V EQ++V+ L +Y
Sbjct: 181 IHEIGYDRVSMRVVNSMEPPPQFQKPEFTLFHLIEAGNVMVGEQKHVESSHLVAEY 236
>gi|125535371|gb|EAY81919.1| hypothetical protein OsI_37097 [Oryza sativa Indica Group]
Length = 360
Score = 297 bits (761), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 197/438 (44%), Positives = 230/438 (52%), Gaps = 117/438 (26%)
Query: 2 AAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSEY 61
+A STVGA + L +K + + ++ G S S+ ++I++ + E
Sbjct: 3 SAFSSTVGAPGSGLVVK-------NWLRTA---GYSHHGGRSRCRCRKIMAMAGGSSKEV 52
Query: 62 DEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR 121
DEEKQT QDRW GLAYDISDDQQDITRGKG+VD+LFQAPM GTH A +
Sbjct: 53 DEEKQTEQDRWKGLAYDISDDQQDITRGKGLVDSLFQAPMGDGTHEARVP---------- 102
Query: 122 QYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFA 181
Q N G + HI+KN + LPN+ QGKSFQCELVFA
Sbjct: 103 QPGSQNVQPGQHHG---------HISKNLMKLPNI-------------QGKSFQCELVFA 140
Query: 182 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGT 241
KMGIN IMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC LFINDLDAG
Sbjct: 141 KMGINLIMMSAGELESGNAGEPAKLIRQRYREAADMINKGKMCLLFINDLDAG------- 193
Query: 242 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR-VPIIVTGNDFSTLYAPLIRDGR 300
V+ + + AD + G +Q PR V + PLIRDGR
Sbjct: 194 RHDAVHGEQPDGE--RDAD-----EHRGQPHQRAAPRDVQPPCPHHRHRQRLLPLIRDGR 246
Query: 301 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360
M+KFYWAPTREDRIGVC GIFR+D VP D FP S
Sbjct: 247 MDKFYWAPTREDRIGVCRGIFRSDKVP--------DAFPSTSSG---------------- 282
Query: 361 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 420
R G+ G +EQENVKRV+LADKYLSE
Sbjct: 283 --------RCGR-------------------------GCTATREQENVKRVRLADKYLSE 309
Query: 421 AALGDANDDAIKNGSFYG 438
AALGDAN D+ G FYG
Sbjct: 310 AALGDANHDS---GEFYG 324
>gi|37783283|gb|AAP72270.1| ribulose-1,5-bisphosphate carboxylase activase [Triticum aestivum]
Length = 201
Score = 297 bits (760), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 135/164 (82%), Positives = 152/164 (92%)
Query: 275 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKL 334
ENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E +VK+
Sbjct: 1 ENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKI 60
Query: 335 VDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKL 394
VDTFPGQSIDFFGALRARVYDDEVRKW++ GIE IGK+LVNS++GP TFEQPKMT++KL
Sbjct: 61 VDTFPGQSIDFFGALRARVYDDEVRKWVTSTGIENIGKKLVNSRDGPVTFEQPKMTVEKL 120
Query: 395 LEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
LEYG MLVQEQ+NVKRVQLAD Y+S+AALGDAN DA+K G+FYG
Sbjct: 121 LEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGTFYG 164
>gi|19387266|gb|AAL87177.1|AF480497_5 putative rubisco activase [Oryza sativa Japonica Group]
Length = 435
Score = 295 bits (755), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 166/349 (47%), Positives = 215/349 (61%), Gaps = 48/349 (13%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDG-LYIAPAFMDKVVVHITKN 149
G+VD LF V +DY + R + L G YIAP F+DKV
Sbjct: 109 GIVDDLFVGNFLGKDSDIV---FDYRQKATRTFEY---LQGDYYIAPLFLDKV------- 155
Query: 150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 209
GIWGGKGQGK+FQ EL+F MG+ P++MSAGELES AGEP +LIR
Sbjct: 156 -------------GIWGGKGQGKTFQTELIFRAMGVEPVIMSAGELESEKAGEPGRLIRD 202
Query: 210 RYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 268
RYR A+ +I+ +GKM L INDLDAG GR G TQ TVNNQ+V TLMN+ADNPT V +
Sbjct: 203 RYRTASQVIQNQGKMSVLMINDLDAGVGRFG-NTQMTVNNQIVIGTLMNLADNPTRVSIG 261
Query: 269 GMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP 327
+ + + RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P RED I + ++ D +
Sbjct: 262 QKWRESDVTHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWQPGREDIINIVHRMYIKDGLS 321
Query: 328 KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK---------------WISEV-GIERIG 371
ED+ K+VDTFP Q++DF+GALR+R YD + + W+ E+ G E++
Sbjct: 322 FEDVSKVVDTFPNQALDFYGALRSRTYDRAILQLLKMYFFANTVEDVLWVEEIGGHEQLN 381
Query: 372 KRLVNSKEGP--PTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
++L+ K+G PTF PK T+D L+E G LV+EQE + +L+ +Y+
Sbjct: 382 EKLLKRKKGEELPTFIPPKTTVDALIESGDSLVKEQELIMNSKLSKEYM 430
>gi|37522136|ref|NP_925513.1| ribulose-bisphosphate carboxylase activase, partial [Gloeobacter
violaceus PCC 7421]
gi|35213136|dbj|BAC90508.1| ribulose-bisphosphate carboxylase activase [Gloeobacter violaceus
PCC 7421]
Length = 294
Score = 287 bits (734), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 134/284 (47%), Positives = 193/284 (67%), Gaps = 3/284 (1%)
Query: 129 LDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPI 188
+ G +I F D++++HI KN+ LP V+ PLILGI G KG+GKSF + V ++ N I
Sbjct: 1 MAGYFIPDRFRDRIILHIAKNYAALPKVQTPLILGIHGPKGEGKSFMVDRVLQELQANVI 60
Query: 189 MMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVN 247
++S+ ELES +AGEP +LIR RYREAA+++K +G++ + I+D+DAGAG TTQYTVN
Sbjct: 61 VISSSELESPDAGEPGRLIRLRYREAAELVKVRGRVAAIVIHDIDAGAGFWSATTQYTVN 120
Query: 248 NQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 307
Q+VNA LM IADNPTNVQLPG Y+ PR+P +VTGNDFS LYAPL+RDGRM KF W
Sbjct: 121 TQLVNAALMAIADNPTNVQLPGSYDPTPLPRIPFVVTGNDFSKLYAPLVRDGRMSKFSWE 180
Query: 308 PTREDRIGVCSGIFRTDNVP--KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV 365
PT ++ + + +F D + D+ +L+ F Q +DFF A+R+R YDD + + +
Sbjct: 181 PTFAEKSEIVAHLFAEDGAALGRYDLERLIQRFGAQPVDFFAAIRSRAYDDMLLQQVKAW 240
Query: 366 GIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVK 409
G+E + + LVN PP FE ++ LD+ L +G ++ +Q+ ++
Sbjct: 241 GLENVSRNLVNHGGQPPRFEAVRLDLDRCLRWGEQIMSDQQAIE 284
>gi|156106226|gb|ABU49419.1| rubisco activase [Camellia sinensis]
Length = 139
Score = 268 bits (685), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 124/135 (91%), Positives = 130/135 (96%)
Query: 193 GELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVN 252
GELESGNAGEPAKLIRQRYREA+DII+KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVN
Sbjct: 4 GELESGNAGEPAKLIRQRYREASDIIRKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVN 63
Query: 253 ATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED 312
ATLMNIADNPT+VQLPGMYN+E+N RVPIIVTGNDFSTLYAPLIRDGRMEK +WAP RED
Sbjct: 64 ATLMNIADNPTSVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKLHWAPNRED 123
Query: 313 RIGVCSGIFRTDNVP 327
RIGVC GIFRTDN P
Sbjct: 124 RIGVCMGIFRTDNCP 138
>gi|159491655|ref|XP_001703775.1| RuBisCO activase-like protein [Chlamydomonas reinhardtii]
gi|158270456|gb|EDO96301.1| RuBisCO activase-like protein [Chlamydomonas reinhardtii]
Length = 533
Score = 268 bits (684), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 141/316 (44%), Positives = 195/316 (61%), Gaps = 22/316 (6%)
Query: 125 LDNTLDGLYIAPAFMDKVVVHITKNFL-----NLPNVKVPLILGIWGGKGQGKSFQCELV 179
+N + Y+APAF+ KV +H+ KN+L N +VPLILGIWG KG GK+FQ EL
Sbjct: 157 FNNIVGDYYVAPAFLMKVAMHMAKNYLFDLGAMSANTRVPLILGIWGEKGMGKTFQTELA 216
Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRM 238
K+G ++MS+GELE AG P KLIR+RYR+A+++ K +GKM L I+D+DAG G
Sbjct: 217 LKKLGAETVVMSSGELEHEWAGTPGKLIRERYRKASEMSKVRGKMTALLIHDIDAGLGHF 276
Query: 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGM--YNQEENPRVPIIVTGNDFSTLYAPLI 296
Q TVNNQ+V TLMNI DNP NV G + R PIIVTGNDFS ++APLI
Sbjct: 277 D-HVQVTVNNQIVIGTLMNICDNP-NVVSTGQDWFAVSRIRRTPIIVTGNDFSKMFAPLI 334
Query: 297 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 356
RDGRM+K+YW PTRED + + +++ D + + D+ L+D F Q +DF+GALRA YD+
Sbjct: 335 RDGRMDKYYWKPTREDMVNIVLQMYQDDGITRRDVEALLDRFRHQPLDFYGALRASTYDE 394
Query: 357 EVRKWIS-----------EVGIERIGKRLVN-SKEGPPTFEQPKMTLDKLLEYGRMLVQE 404
++R WI + + K L++ + P FE ++TLD L+ G L E
Sbjct: 395 QIRDWIKTDVTGEEFIADAANLSNMAKTLLSVDRSEMPKFEPVRLTLDMLVAEGERLEME 454
Query: 405 QENVKRVQLADKYLSE 420
Q+ V +L+++YL
Sbjct: 455 QQQVNDHKLSEQYLKH 470
>gi|303281738|ref|XP_003060161.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458816|gb|EEH56113.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 498
Score = 267 bits (683), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 162/385 (42%), Positives = 224/385 (58%), Gaps = 31/385 (8%)
Query: 59 SEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYA--VMSSYDYI 116
+E + T +D L S+ + ++ KG+VD +F +GT A V+ + I
Sbjct: 78 AEETHARGTGEDYLYELGRQSSNLRTEVGARKGVVDDVF-----AGTANANFVLGADADI 132
Query: 117 SQGLRQY----SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGK 172
+ G +Y SL N +DG Y+ P FMDKV VH+ KN L +VPLILGIWG KG GK
Sbjct: 133 ATGELRYTEARSLTNVVDGCYVPPRFMDKVCVHLVKNHLAEGVGQVPLILGIWGEKGCGK 192
Query: 173 SFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK--------GKMC 224
S+ EL M +PI++SAGELE AG P + IR+RYR A+ ++ + G++
Sbjct: 193 SYTLELCLRAMRASPIIVSAGELEDEWAGAPGRRIRERYRAASRLMSQARSISTLTGRLA 252
Query: 225 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP--RVPII 282
CL INDLDAGAG TQ TVN QMV TLMN+ D+PT+V + +E+ RVPII
Sbjct: 253 CLVINDLDAGAGTYRA-TQKTVNMQMVMGTLMNLCDHPTSVSVGAEEWREDRELRRVPII 311
Query: 283 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQS 342
+TGND STLYAPL+RDGRM+KF WAP+ ++R + V D ++LV F Q+
Sbjct: 312 ITGNDLSTLYAPLLRDGRMDKFMWAPSIDERAAAVHAVMADAGVTARDALELVRAFSNQA 371
Query: 343 ---IDFFGALRARVYDDEVRKWISEVGIER-IGKRLV----NSKEGPPT-FEQPKMTLDK 393
+DFFGAL AR D V +WI+ G R +G L+ +++ P ++TL+
Sbjct: 372 RSPLDFFGALHARTVDAAVLEWIARNGGARGMGDALLRGDARTRKAPSVDRSSSRLTLEA 431
Query: 394 LLEYGRMLVQEQENVKRVQLADKYL 418
LLE GR L +EQ+ V V+L D+Y+
Sbjct: 432 LLEIGRELEREQQRVLDVRLVDEYM 456
>gi|168812226|gb|ACA30289.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase activase
alpha 2 [Cupressus sempervirens]
Length = 145
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 120/145 (82%), Positives = 136/145 (93%)
Query: 272 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDI 331
N+E+NPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIFRTDN+ I
Sbjct: 1 NKEDNPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFRTDNISDAAI 60
Query: 332 VKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTL 391
VK+VD+FPGQSI+FFGALRARVYDDEVRKWI EVG+E IGK+LVNS++GPPTFE+P MT+
Sbjct: 61 VKIVDSFPGQSINFFGALRARVYDDEVRKWIGEVGVEGIGKKLVNSRDGPPTFEKPAMTV 120
Query: 392 DKLLEYGRMLVQEQENVKRVQLADK 416
+KLLEYG MLV+EQENVKRVQLADK
Sbjct: 121 EKLLEYGNMLVKEQENVKRVQLADK 145
>gi|47176692|gb|AAT12492.1| putative RuBisCo activase protein [Zantedeschia hybrid cultivar]
Length = 244
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 128/240 (53%), Positives = 171/240 (71%), Gaps = 6/240 (2%)
Query: 184 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTT 242
GI PI+MSAGELES NAGEP +LIR+RYR A+ +++ +GKM CL IND+DAG GR G T
Sbjct: 1 GIEPIIMSAGELESENAGEPGRLIRERYRTASQVVQNQGKMSCLTINDIDAGLGRFG-NT 59
Query: 243 QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRM 301
Q TVNNQ+ TLMN++DNPT V + + + + R+P+IVTGNDFSTLYAPLIRDGRM
Sbjct: 60 QVTVNNQIAVGTLMNLSDNPTRVSIGQKWRESDVTHRIPVIVTGNDFSTLYAPLIRDGRM 119
Query: 302 EKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 361
EKFYW PT ED I + ++ D + ++ + +VD+FP Q++DF+GALR+R YD KW
Sbjct: 120 EKFYWQPTHEDIINIVQRMYEKDGISRDAVESIVDSFPNQALDFYGALRSRTYDKSTLKW 179
Query: 362 ISEV-GIERIGKRLVNS-KEGP-PTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
I E+ G E + +L+ KEG PTF PK TL+ LLE G L++EQE + +L+ +Y+
Sbjct: 180 IDEIGGYENLSDKLLRERKEGKLPTFVPPKQTLEALLESGHSLIEEQELIMNTKLSKEYM 239
>gi|5903100|gb|AAD55658.1|AC008017_31 Highly similar to ribulose-1,5-bisphosphate carboxylase/oxygenase
activase [Arabidopsis thaliana]
Length = 245
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 125/241 (51%), Positives = 172/241 (71%), Gaps = 6/241 (2%)
Query: 183 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGT 241
MG+ P++MSAGELES AGEP +LIR RYR A+ +I+ +GKM L IND+DAG GR G
Sbjct: 1 MGVEPVIMSAGELESDRAGEPGRLIRDRYRTASQVIQNQGKMSVLMINDIDAGLGRFG-E 59
Query: 242 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN-PRVPIIVTGNDFSTLYAPLIRDGR 300
TQ TVNNQ+V TLMN+ADNPT V + + + + RVP+IVTGNDFSTLYAPLIR+GR
Sbjct: 60 TQMTVNNQIVVGTLMNLADNPTRVSVGQEWREADMVNRVPLIVTGNDFSTLYAPLIREGR 119
Query: 301 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360
MEKFYW PTRED + + S ++ D + ++D++ +VD FP Q++DF+GALR+R YD + K
Sbjct: 120 MEKFYWQPTREDIVNIVSRMYEKDGISRKDVISIVDKFPNQALDFYGALRSRTYDRSILK 179
Query: 361 WISEV-GIERIGKRLVNSKEGP--PTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
W+ E G+E +GK L+ K+ P F P+ T++ LLE G L+ EQ+ + +L+ +Y
Sbjct: 180 WVDEAGGMETLGKVLLRRKKTQEVPQFTAPEQTVEALLESGYSLINEQKLIMETKLSKEY 239
Query: 418 L 418
+
Sbjct: 240 M 240
>gi|255078274|ref|XP_002502717.1| predicted protein [Micromonas sp. RCC299]
gi|226517982|gb|ACO63975.1| predicted protein [Micromonas sp. RCC299]
Length = 396
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 132/292 (45%), Positives = 185/292 (63%), Gaps = 24/292 (8%)
Query: 91 GMVDTLFQAPMESGTHYAVMSSYDYISQGLR---QYSLDNTLDGLYIAPAFMDKVVVHIT 147
G+VD +F ++ + + + + D S LR + S +N + ++ F+D+V +HI
Sbjct: 108 GVVDDVFAG--KNNSKFNLGADSDIASGKLRYTMERSFNNLVGEFHVPKQFVDRVALHIA 165
Query: 148 KNFL-----------NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196
KN L L +VPLILGIWG KG GK+F EL +G++P++MSAGELE
Sbjct: 166 KNLLMDSTNPGVGENALGLTRVPLILGIWGSKGCGKTFNLELACKALGVHPVVMSAGELE 225
Query: 197 SGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATL 255
AGEP +LIR+RYR AA+I+K +GK CL IND+DAG G TQ TVN QMV TL
Sbjct: 226 DEWAGEPGRLIRRRYRHAAEIMKVRGKATCLIINDIDAGVGWFK-QTQATVNTQMVMGTL 284
Query: 256 MNIADNPTNV------QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 309
MNI D+P V ++ + E RVPII+TGND STLYAPL+RDGRM+KFYW+PT
Sbjct: 285 MNICDHPNFVSNEEDDEIHAYRDDEYIRRVPIIITGNDLSTLYAPLLRDGRMDKFYWSPT 344
Query: 310 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 361
RED + +++ D+VP+ + +LV + Q +DFFGA+R+R+YD+ + +W
Sbjct: 345 REDICDMVHAMYKDDDVPRATVERLVQAYSHQPLDFFGAIRSRMYDEAIARW 396
>gi|145346081|ref|XP_001417523.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577750|gb|ABO95816.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 381
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 138/307 (44%), Positives = 185/307 (60%), Gaps = 10/307 (3%)
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLN----LPNVKVPLILGIWGGKGQGKSFQC 176
R++ LDG ++ F ++V H+ KN L L LILGIWG KG GK+
Sbjct: 75 REFRTFAALDGFHVPERFAERVATHVVKNLLKDKGALGATSPALILGIWGHKGCGKTMNV 134
Query: 177 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGA 235
EL KMG+ PI+ SAGELE AGEP ++R+RY AA +++ GK+ CL IND+DAG
Sbjct: 135 ELACKKMGLQPIVTSAGELEDSTAGEPGAMLRRRYLTAARAMRETGKLSCLIINDIDAGI 194
Query: 236 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY---NQEENPRVPIIVTGNDFSTLY 292
G+ TVNNQ+ + TLMNI DNPT V ++ ++ N RVPIIVTGNDFS LY
Sbjct: 195 GKFKDDLG-TVNNQITHGTLMNICDNPTIVSEGLVWRTDSKSTNARVPIIVTGNDFSRLY 253
Query: 293 APLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRAR 352
APL RDGRM+ + W PT ++ + + + + D + LV TFP Q +DFFGALRAR
Sbjct: 254 APLTRDGRMDLWMWEPTSQELVEMIHAMMKDDGLTTACCETLVATFPNQPLDFFGALRAR 313
Query: 353 VYDDEVRKWISEVGIERIGKRLVNSKEGPP-TFEQPKMTLDKLLEYGRMLVQEQENVKRV 411
VYDD V ++ VG++ + LV E +TL++LL GR +V EQENV +
Sbjct: 314 VYDDAVSDFVFNVGLDGLNDSLVGLDERRRLKLGDVTITLERLLACGRNVVGEQENVNNI 373
Query: 412 QLADKYL 418
QLA +Y+
Sbjct: 374 QLAREYM 380
>gi|308803006|ref|XP_003078816.1| 26S proteasome regulatory complex, ATPase RPT4 (ISS) [Ostreococcus
tauri]
gi|116057269|emb|CAL51696.1| 26S proteasome regulatory complex, ATPase RPT4 (ISS) [Ostreococcus
tauri]
Length = 584
Score = 251 bits (642), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 143/321 (44%), Positives = 195/321 (60%), Gaps = 24/321 (7%)
Query: 108 AVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFL----NLPNVKVPLILG 163
A ++S ++ G R S N Y+ FM++V H+ KN L L + K ++LG
Sbjct: 63 ADVASGEHREGGFR--SFGNVEGEFYVPERFMERVATHVAKNLLADRDGLRSAKPAVMLG 120
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GK 222
IWG KG GK+F EL +MG+ PI+ SAGELE G AGEP ++R+RY AA +++ G+
Sbjct: 121 IWGHKGCGKTFNVELACKRMGLMPIVTSAGELEDGTAGEPGAMLRRRYLTAARAMRETGR 180
Query: 223 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE---NPRV 279
+ CL IND+DAG GR TVNNQ+ + TLMNI DNPT V + + N RV
Sbjct: 181 LSCLIINDIDAGIGRFRDDLG-TVNNQITHGTLMNICDNPTLVSEGNAWRHDAKMTNARV 239
Query: 280 PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC-SGIFRTDNVPKEDIVKLVDTF 338
PIIVTGNDFS LYAPL RDGRM+ W +C + I + D + ++D LVDTF
Sbjct: 240 PIIVTGNDFSRLYAPLTRDGRMD--LW---------ICYTAITKDDGLSEKDCETLVDTF 288
Query: 339 PGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGP-PTFEQPKMTLDKLLEY 397
P Q +DFFGA+RARVYDD VR +I +VG+ + + LV E T + +L++L++
Sbjct: 289 PQQPLDFFGAIRARVYDDAVRDFILDVGLVGMNEALVGGVESKRKTLGKVNASLERLIQA 348
Query: 398 GRMLVQEQENVKRVQLADKYL 418
G L +EQENV +QLA +Y+
Sbjct: 349 GHELCEEQENVSNIQLAREYM 369
>gi|303290017|ref|XP_003064296.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454612|gb|EEH51918.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 505
Score = 250 bits (639), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 153/388 (39%), Positives = 206/388 (53%), Gaps = 68/388 (17%)
Query: 90 KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQY-------SLDNTLDGLYIAPAFMDKV 142
KG++D +F + + S I+ G +Y S N ++ P F+DKV
Sbjct: 122 KGIIDDVFAGTANAKFNLGADSD---IASGRLRYRDVEHVRSFKNLFGDFHVPPLFVDKV 178
Query: 143 VVHITKNFLNLPN------------VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190
+H+ KN + + KVPLILG+WG KG GK+F EL + I P++M
Sbjct: 179 SLHVAKNLMADSDNPGASANPLGGLTKVPLILGVWGAKGCGKTFNLELACKALDITPVVM 238
Query: 191 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 249
SAGELE AG P +LIR RYR+AA+II+ GKM CL IND+DAG GR TQ TVN Q
Sbjct: 239 SAGELEDEWAGNPGRLIRSRYRKAAEIIRNHGKMSCLIINDIDAGVGRFK-RTQATVNTQ 297
Query: 250 MVNATLMNIADNPTNVQLPGMYNQEENP-----------RVPIIVTGNDFSTLYAPLIRD 298
MV TLMN+ D+PT V N+E++ RVPIIVTGND STLYAPL+RD
Sbjct: 298 MVMGTLMNLCDHPTQVS-----NEEDDEIHEYREEERIRRVPIIVTGNDLSTLYAPLLRD 352
Query: 299 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 358
GRMEKFYW PTR D + ++R D+V +E + +LV GQ +DFFGA RAR+YD +
Sbjct: 353 GRMEKFYWQPTRTDIADMVHAMYRDDDVSRETVERLVARHEGQPLDFFGATRARMYDRCI 412
Query: 359 RKWI----SEVGIERIGKRLVN-----------SKEGP-------------PTFEQPKMT 390
+W SE G+R V ++E P P F +
Sbjct: 413 VEWAESFRSETPDPVTGQRHVTKAMGEHLMKNRTRERPDDEHDPGDFVLWKPDFTVQDCS 472
Query: 391 LDKLLEYGRMLVQEQENVKRVQLADKYL 418
+ L+ + L +EQ V +L++ Y+
Sbjct: 473 EEALMRHADDLAREQRLVNEKRLSEDYM 500
>gi|412986205|emb|CCO17405.1| predicted protein [Bathycoccus prasinos]
Length = 596
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 135/303 (44%), Positives = 178/303 (58%), Gaps = 13/303 (4%)
Query: 130 DGLYIAPAFMDKVVVHITKNFLNLPNVKV---------PLILGIWGGKGQGKSFQCELVF 180
D + ++++ +TKN+L K PL+LGIWGGKG GKSF EL
Sbjct: 76 DDFTVPERLLERIGTFLTKNYLMHYQAKTFMKKRTIVSPLVLGIWGGKGCGKSFNVELAC 135
Query: 181 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGRMG 239
AK+G+ PI+ SAGELE AGEP KL+R+RY A + ++ G CL IND+DAG GR
Sbjct: 136 AKLGVLPIVTSAGELEDATAGEPGKLLRRRYLAAGKMTRETGVPTCLIINDIDAGVGRFK 195
Query: 240 GTTQYTVNNQMVNATLMNIADNPTNV--QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 297
TT TVNNQ+V TLMNIADNPTNV + N+ PRVP+IVTGNDFS LYAPL R
Sbjct: 196 HTTSSTVNNQIVQGTLMNIADNPTNVYEDTSIVGNRASVPRVPVIVTGNDFSRLYAPLAR 255
Query: 298 DGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDE 357
DGRM+KF+W P+RE+ +G+ + IF + K D KLV FP Q +DFF A+R R D
Sbjct: 256 DGRMDKFFWEPSREEIVGIMTPIFAQHGLDKRDTEKLVSHFPNQPLDFFSAVRNRAIDAF 315
Query: 358 VRKWISEVGIERIGKRL-VNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 416
V + E + L N + ++ + L R + EQ+NV +QL+ +
Sbjct: 316 VLDFCVENEMAFTSALLDANKSSSQSKVSERTVSYETFLSAARYVQNEQQNVNNLQLSRE 375
Query: 417 YLS 419
YL+
Sbjct: 376 YLA 378
>gi|145353113|ref|XP_001420873.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581108|gb|ABO99166.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 342
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 136/316 (43%), Positives = 187/316 (59%), Gaps = 31/316 (9%)
Query: 78 DISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR-----QYSLDNTLDGL 132
D + ++ +G+VD +F + + + + D S LR N +
Sbjct: 30 DTGNTNTNVGARQGVVDDVFT--RNATGEFQLGADSDIASGELRYRYQEARKFKNLVGDY 87
Query: 133 YIAPAFMDKVVVHITKNFL---NLPNVK--------------VPLILGIWGGKGQGKSFQ 175
+ PAFM+KV H+ KNFL L +V+ PLILG+WGGKG GKSF
Sbjct: 88 HCPPAFMEKVSGHLVKNFLFGGGLRHVREMTNEAGVVVQPPNTPLILGVWGGKGCGKSFN 147
Query: 176 CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAG 234
EL MG+ PI+ SAGELE NAG P +LIR+RY+ A +I+++ G M CL IND+DAG
Sbjct: 148 LELACKAMGVTPIITSAGELEDENAGAPGRLIRERYKRAGEILRRTGVMSCLIINDVDAG 207
Query: 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE----ENPRVPIIVTGNDFST 290
G TQ+TVNNQ V TLMN+ D+P V L ++ + RVPIIVTGND ST
Sbjct: 208 IGWF-KDTQHTVNNQTVCGTLMNLCDHPELVSLGEDRGEDGKNLQTARVPIIVTGNDLST 266
Query: 291 LYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTD-NVPKEDIVKLVDTFPGQSIDFFGAL 349
+YAPL+RDGRM+K+YW P+R+D + +F+ + + + +LV+ FPGQ +DFFGA
Sbjct: 267 VYAPLLRDGRMDKWYWNPSRDDICDIVHALFKDEVDWSPDATARLVNAFPGQPLDFFGAA 326
Query: 350 RARVYDDEVRKWISEV 365
RA+VYDD V +W+ EV
Sbjct: 327 RAKVYDDAVSRWMCEV 342
>gi|412985424|emb|CCO18870.1| predicted protein [Bathycoccus prasinos]
Length = 1026
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 130/258 (50%), Positives = 168/258 (65%), Gaps = 20/258 (7%)
Query: 118 QGLRQYSLDNTLDGLYIAPA-FMDKVVVHITKNFL-----NLPNVKVPLILGIWGGKGQG 171
Q +RQ+ N L G Y P F++KV +H+ KNF+ N PNV PLILG+WGGKG G
Sbjct: 159 QEVRQF---NNLVGDYFVPEQFIEKVALHVCKNFMCAAQPNSPNV--PLILGVWGGKGCG 213
Query: 172 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFIND 230
K+F EL K+G+ PI+ SAGELE +AG P +LIRQRYR A ++++ GKM CL +ND
Sbjct: 214 KTFNLELACKKLGMMPIVTSAGELEDESAGGPGRLIRQRYRRAGEVVRVHGKMSCLIVND 273
Query: 231 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP-----RVPIIVTG 285
+DAG G T Q TVNNQ V TLMN+ D+P V L G +E+ R+PIIVTG
Sbjct: 274 IDAGLGWFKDTQQ-TVNNQTVCGTLMNLCDHPELVSL-GEERREDGSNLQTVRIPIIVTG 331
Query: 286 NDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK-EDIVKLVDTFPGQSID 344
ND S LYAPL+RDGRMEK+YW P +D + + +F+ D + +D LV FP Q +D
Sbjct: 332 NDLSRLYAPLLRDGRMEKWYWDPQFDDIVNMVDALFKDDPLWSIDDTRALVAKFPNQPLD 391
Query: 345 FFGALRARVYDDEVRKWI 362
FFGA R+ VYDD +R W+
Sbjct: 392 FFGATRSTVYDDAIRNWM 409
>gi|303281566|ref|XP_003060075.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458730|gb|EEH56027.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 390
Score = 241 bits (615), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 134/309 (43%), Positives = 184/309 (59%), Gaps = 19/309 (6%)
Query: 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM 183
SL N ++ F DK H+ KN L N++ PLILGIWGGKG GKSF EL M
Sbjct: 8 SLANVQGDYHVPERFRDKFATHLVKNALASSNLQTPLILGIWGGKGCGKSFNVELCCRDM 67
Query: 184 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGRMGGTT 242
G+ PI+ SAGELE AGEP L+R+RY A+ I+ GK DLDAG GR
Sbjct: 68 GVTPIVTSAGELEDPVAGEPGALLRRRYLAASTAIRHTGKPA-----DLDAGIGRH-RDD 121
Query: 243 QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP---RVPIIVTGNDFSTLYAPLIRDG 299
+ TVNNQ+V ATLMN+ D+PT V + G + ++ RVPI+VTGND S +YAPL R G
Sbjct: 122 KTTVNNQIVAATLMNLCDDPTRVSVGGEWRADDRARCERVPIVVTGNDLSRVYAPLTRSG 181
Query: 300 RMEKFYWAPTREDRIGVCSGIFRTDNVPK-----EDIVKLVDTFPGQSIDFFGALRARVY 354
RM+ + W PTR++ + + + D P ED + VD F Q +DFFGA R+R
Sbjct: 182 RMDLWMWEPTRDEIAEMVHQLLKDDKRPGGYGGIEDARRFVDAFDAQPLDFFGAARSRCV 241
Query: 355 DDEVRKWISEVGIERIGKRLVNS----KEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKR 410
DD+VR ++ VG+E +G RL++S K + ++L+ L+ GR + +EQ+NV
Sbjct: 242 DDDVRAFVDRVGVESLGTRLLSSGDKIKSKSVVVGRGDVSLEALVRAGRAIEREQQNVLD 301
Query: 411 VQLADKYLS 419
V+L+ +YL+
Sbjct: 302 VRLSREYLA 310
>gi|255088359|ref|XP_002506102.1| ribulose bisphosphate carboxylase/oxygenase activase [Micromonas
sp. RCC299]
gi|226521373|gb|ACO67360.1| ribulose bisphosphate carboxylase/oxygenase activase [Micromonas
sp. RCC299]
Length = 395
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 127/308 (41%), Positives = 180/308 (58%), Gaps = 26/308 (8%)
Query: 133 YIAPAFMDKVVVHITKNFL-----NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINP 187
+I F+D+ HI KN L NL +V PLIL +WGGKG GKSF EL ++G+ P
Sbjct: 92 HIPDRFLDRFATHIAKNLLIDGGANLGSV--PLILCVWGGKGCGKSFNLELCCKRLGVFP 149
Query: 188 IMMSAGELESGNAGEPAKLIRQRYREAA-DIIKKGKMCCLFINDLDAGAGRMGGTTQYTV 246
+++SAGELE AGEP ++R+RY A + G C+ +ND+DAG GR + TV
Sbjct: 150 VVVSAGELEDPTAGEPGAMLRRRYLTAGKHMSASGAPTCVIVNDVDAGVGRF-KDDKATV 208
Query: 247 NNQMVNATLMNIADNPTNVQLPGMYNQEEN---PRVPIIVTGNDFSTLYAPLIRDGRMEK 303
NNQ+ ATLMN+ D P V + G + ++ PRVPI+VT ND S LYAPL R+GR +
Sbjct: 209 NNQIAQATLMNLCDEPNRVSVGGEWRSDDRAHCPRVPIVVTANDPSVLYAPLTRNGRTDL 268
Query: 304 FYWAPTREDRIGVCSGIFRTDNVP----KEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 359
+ W PTR + + D P + D ++LV+ FP Q +DFFGA+R+R DD VR
Sbjct: 269 WMWEPTRGEITKMVHDAL--DGAPGYGGESDALELVNAFPSQPLDFFGAVRSRCADDAVR 326
Query: 360 KWISEVGIERIGKRLVNSK---EGPPTFEQPKMT-----LDKLLEYGRMLVQEQENVKRV 411
++I+ VG+E +G L + G P + +T L LLE G + +EQ+NV V
Sbjct: 327 RFIARVGLENLGATLCGHRGREGGDPGWSASTLTGMDASLRSLLEAGAEIAREQQNVMDV 386
Query: 412 QLADKYLS 419
L+ +Y++
Sbjct: 387 ALSREYVA 394
>gi|169635155|gb|ACA58354.1| rubisco activase 2 [Arachis diogoi]
Length = 160
Score = 214 bits (546), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 108/122 (88%), Positives = 116/122 (95%)
Query: 317 CSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVN 376
C+GIFRTDNVP EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW+S VG++ +GK+LVN
Sbjct: 2 CTGIFRTDNVPPEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSGVGVDGVGKKLVN 61
Query: 377 SKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSF 436
SKEGPPTFEQPKMTL KLLEYG MLVQEQENVKRVQLADKYL+EAALGDAN DAIK+GSF
Sbjct: 62 SKEGPPTFEQPKMTLAKLLEYGNMLVQEQENVKRVQLADKYLNEAALGDANQDAIKSGSF 121
Query: 437 YG 438
YG
Sbjct: 122 YG 123
>gi|414585019|tpg|DAA35590.1| TPA: hypothetical protein ZEAMMB73_040721 [Zea mays]
Length = 203
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 105/200 (52%), Positives = 141/200 (70%), Gaps = 5/200 (2%)
Query: 223 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE-NPRVPI 281
M CL INDLDAG GR G TQ TVNNQ+ TLMN+ADNPT V + + + + RVPI
Sbjct: 1 MSCLMINDLDAGVGRFG-NTQMTVNNQIAVGTLMNLADNPTRVSIGQKWRESDVTHRVPI 59
Query: 282 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQ 341
IVTGNDFSTLYAPLIRDGRMEKFYW P RED I + G++ D + E++ ++VD FP Q
Sbjct: 60 IVTGNDFSTLYAPLIRDGRMEKFYWQPNREDIISIVHGMYIKDGLSVEEVSRIVDAFPNQ 119
Query: 342 SIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVNSKEGP--PTFEQPKMTLDKLLEYG 398
++DF+GALR+R YD + +W+ E+ G E++ ++L+ K+G PTF PK TL+ L+E G
Sbjct: 120 ALDFYGALRSRTYDQAILEWVEEIGGHEQLNEKLLKRKKGEELPTFIPPKPTLEALIESG 179
Query: 399 RMLVQEQENVKRVQLADKYL 418
LV+EQE + +L+ +Y+
Sbjct: 180 YSLVKEQELIMSSKLSKEYM 199
>gi|338746118|emb|CCC15108.1| rubisco activase [Lepidodinium chlorophorum]
Length = 252
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 107/162 (66%), Positives = 126/162 (77%), Gaps = 4/162 (2%)
Query: 71 RWAGLAYDISDDQQDITRGKGMVDTLFQAPME-SGTHYAVMSSYDYISQGLRQYSLDNTL 129
RW GL D+SDDQQDITRG+ MVD+LFQ GTH AVMSS + Q + + + +
Sbjct: 93 RWRGLDEDVSDDQQDITRGRHMVDSLFQGQQGLGGTHNAVMSSGPNVHQ--KNFGDSDVM 150
Query: 130 -DGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPI 188
DGLYIAP F+DK+ VHI KNFL LP VKVPLILGIWGGKGQGK+FQ EL + K+GINPI
Sbjct: 151 QDGLYIAPDFLDKMTVHIAKNFLELPLVKVPLILGIWGGKGQGKTFQTELGYRKLGINPI 210
Query: 189 MMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 230
+MSAGELESGNAGEPAKL+R +EA++ IKKGKMC LFIN+
Sbjct: 211 VMSAGELESGNAGEPAKLVRAGNKEASEFIKKGKMCFLFINE 252
>gi|326493048|dbj|BAJ84985.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326524450|dbj|BAK00608.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 206
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/202 (52%), Positives = 141/202 (69%), Gaps = 5/202 (2%)
Query: 221 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE-NPRV 279
GKM CL INDLDAG GR G T Q TVNNQ+V TLMN+ADNP V + + + + R+
Sbjct: 1 GKMSCLMINDLDAGLGRFGNT-QMTVNNQIVVGTLMNLADNPNRVSVGQKWRESDITHRI 59
Query: 280 PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFP 339
PII TGNDFSTLYAPLIRDGRMEKFYW PTRED I + ++ D + E++ +VDTFP
Sbjct: 60 PIIATGNDFSTLYAPLIRDGRMEKFYWQPTREDIINIIHRMYTKDGLSLEEVSSIVDTFP 119
Query: 340 GQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVNSK--EGPPTFEQPKMTLDKLLE 396
Q++DF+GALR+R YD + +W++++ G E++G++L+ K E PTF PK TLD L++
Sbjct: 120 NQALDFYGALRSRTYDQAILQWVNDIGGYEQLGEKLLKRKNREKLPTFIPPKPTLDALIQ 179
Query: 397 YGRMLVQEQENVKRVQLADKYL 418
G LV+EQ V L+ +Y+
Sbjct: 180 SGNSLVEEQAFVMNSNLSKEYM 201
>gi|134035003|sp|P85086.1|RCA_ARAHY RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase
Length = 140
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 135/277 (48%), Positives = 138/277 (49%), Gaps = 137/277 (49%)
Query: 74 GLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLY 133
GLAYDISDDQQDITRG MVD+LFQAPM GTHYAVMSSY+YISQGLR
Sbjct: 1 GLAYDISDDQQDITRG--MVDSLFQAPMNDGTHYAVMSSYEYISQGLR------------ 46
Query: 134 IAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 193
VPLILGIWGGK MGINPIMMSAG
Sbjct: 47 ------------------------VPLILGIWGGK--------------MGINPIMMSAG 68
Query: 194 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 253
ELESGNAGEPA KMCCLFINDLDAGAG
Sbjct: 69 ELESGNAGEPA-----------------KMCCLFINDLDAGAG----------------- 94
Query: 254 TLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 313
RVPIIVTGNDFSTLYAPLI R
Sbjct: 95 ------------------------RVPIIVTGNDFSTLYAPLI----------------R 114
Query: 314 IGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALR 350
IGVC+GIFR LVDTFPGQSIDFFGALR
Sbjct: 115 IGVCTGIFR-----------LVDTFPGQSIDFFGALR 140
>gi|302836245|ref|XP_002949683.1| hypothetical protein VOLCADRAFT_42653 [Volvox carteri f.
nagariensis]
gi|300265042|gb|EFJ49235.1| hypothetical protein VOLCADRAFT_42653 [Volvox carteri f.
nagariensis]
Length = 323
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 129/316 (40%), Positives = 175/316 (55%), Gaps = 21/316 (6%)
Query: 120 LRQY---SLDNTLDGLYIAPAFMDKVVVHITKNFLN-----LPNVKVPLILGIWGGKGQG 171
LR Y + +N + Y+APAF++KV +H+ KN+L NV+VPLILGIWG KG G
Sbjct: 15 LRAYDFRTFNNIVGDYYVAPAFLEKVALHMAKNYLYDLGAIASNVRVPLILGIWGEKGMG 74
Query: 172 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFIND 230
K+FQ EL ++G ++MS+GELE AG P KLIR+RYR+A+++ K +GKM L I+D
Sbjct: 75 KTFQTELALKQLGAETVVMSSGELEHEWAGTPGKLIRERYRKASEMSKVRGKMTALLIHD 134
Query: 231 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN-PRVPIIVTGNDFS 289
+DAG G Q TVNNQ+V TLMNI DNP V + + E+ R PIIVTG
Sbjct: 135 IDAGLGHF-DHVQVTVNNQIVIGTLMNICDNPNVVSVGQDWRSEDRIRRTPIIVTGR--- 190
Query: 290 TLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIV-KLVDTFPGQSIDFFGA 348
P R R + T+ S + N P V V F Q +DFFGA
Sbjct: 191 ---GPTRRFSRYLLRVTSVTQPHSTNHLSNCYLPTNTPCCTYVYTYVCRFKRQPLDFFGA 247
Query: 349 LRARVYDDEVRKWI-SEVGIERIGKRLV--NSKEGPPTFEQPKMTLDKLLEYGRMLVQEQ 405
LRA YD+++R+WI ++ G+ V K G P FE ++T+D L+ G L EQ
Sbjct: 248 LRASTYDEQIRQWIRRDITGGLWGEVCVGGTDKSGLPRFEPVRLTVDMLVAEGERLENEQ 307
Query: 406 ENVKRVQLADKYLSEA 421
+ V +L+ YL
Sbjct: 308 QQVLNHKLSADYLRHV 323
>gi|133711850|gb|ABO36654.1| RuBisCO activase [Cucumis sativus]
Length = 111
Score = 192 bits (487), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 90/108 (83%), Positives = 98/108 (90%)
Query: 307 APTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVG 366
APTREDRIG+C+GIFRTD VP EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW VG
Sbjct: 1 APTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWAVGVG 60
Query: 367 IERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLA 414
+ERIG+ LVNSKE PPTF+QPKMT++KLLEYG MLV EQENVKRV+L
Sbjct: 61 VERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKLV 108
>gi|115486825|ref|NP_001068556.1| Os11g0707100 [Oryza sativa Japonica Group]
gi|62733170|gb|AAX95287.1| Similar to ribulose bisphosphate carboxylase/oxygenase activase b,
chloroplastprecursor (rubisco activase b) (ra b) [Oryza
sativa Japonica Group]
gi|62733298|gb|AAX95415.1| ribulose bisphosphate carboxylase/oxygenase activase b,
chloroplastprecursor (rubisco activase b) (ra b)-related
[Oryza sativa Japonica Group]
gi|77552727|gb|ABA95524.1| expressed protein [Oryza sativa Japonica Group]
gi|113645778|dbj|BAF28919.1| Os11g0707100 [Oryza sativa Japonica Group]
gi|125578109|gb|EAZ19331.1| hypothetical protein OsJ_34881 [Oryza sativa Japonica Group]
Length = 366
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 115/233 (49%), Positives = 137/233 (58%), Gaps = 50/233 (21%)
Query: 2 AAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSEY 61
+A STVGA + L +K + + ++ G S S+ ++I++ + E
Sbjct: 3 SAFSSTVGAPGSGLVVK-------NWLRTA---GYSHHGGRSRCRCRKIMAMAGGSSKEV 52
Query: 62 DEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR 121
DEEKQT QDRW GLAYDISDDQQDITRGKG+VD+LFQAPM GTH A +
Sbjct: 53 DEEKQTEQDRWKGLAYDISDDQQDITRGKGLVDSLFQAPMGDGTHEARVP---------- 102
Query: 122 QYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFA 181
Q N G + HI+KN + LPN+ QGKSFQC+LVFA
Sbjct: 103 QPGSQNVQPGQHHG---------HISKNLMKLPNI-------------QGKSFQCDLVFA 140
Query: 182 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234
KMGIN IMMS AGEPAKLIRQRYREAAD+I KGKMC LFINDLDAG
Sbjct: 141 KMGINLIMMS--------AGEPAKLIRQRYREAADMINKGKMCVLFINDLDAG 185
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 58/96 (60%), Gaps = 34/96 (35%)
Query: 343 IDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLV 402
IDFFGALRARVY DEVR+W++E+G+E IG+RL
Sbjct: 269 IDFFGALRARVYGDEVRRWVAEIGVENIGRRL---------------------------- 300
Query: 403 QEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
ENVKRV+LADKYLSEAALGDAN D+ G FYG
Sbjct: 301 ---ENVKRVRLADKYLSEAALGDANHDS---GEFYG 330
>gi|345111061|pdb|3THG|A Chain A, Crystal Structure Of The Creosote Rubisco Activase
C-Domain
Length = 107
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 89/102 (87%), Positives = 96/102 (94%)
Query: 309 TREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIE 368
TREDRIGVC GIFRTDNV +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW+SEVG++
Sbjct: 6 TREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSEVGVD 65
Query: 369 RIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKR 410
IGK+LVNSKEGPP+FEQPKMT+DKLL YG MLVQEQENVKR
Sbjct: 66 TIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKR 107
>gi|388515017|gb|AFK45570.1| unknown [Lotus japonicus]
Length = 184
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 82/178 (46%), Positives = 124/178 (69%), Gaps = 4/178 (2%)
Query: 245 TVNNQMVNATLMNIADNPTNVQLPGMYNQEE-NPRVPIIVTGNDFSTLYAPLIRDGRMEK 303
TVNNQ+V TLMN++DNPT V + + + + R+PIIVTGNDFST+YAPLIRDGRM+K
Sbjct: 2 TVNNQIVVGTLMNLSDNPTRVSVGQDWRESDITNRIPIIVTGNDFSTIYAPLIRDGRMDK 61
Query: 304 FYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 363
FYW P RED + ++ D + ++++ ++VDTFP Q++DF+GALR+R YD + KW+
Sbjct: 62 FYWQPNREDIQNIVHRMYEKDGISRDEVERIVDTFPNQALDFYGALRSRTYDKSILKWVD 121
Query: 364 EV-GIERIGKRLVNSK--EGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
++ G+E G +++ + + P F P+ T+D LLE G L++EQE V +L+ +Y+
Sbjct: 122 DIGGVENFGSKILKRRKDQNLPVFIPPEQTVDALLESGYSLIKEQELVMESKLSKEYM 179
>gi|111162643|gb|ABH07508.1| RuBisCO activase, partial [Nicotiana attenuata]
Length = 100
Score = 169 bits (428), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 79/100 (79%), Positives = 90/100 (90%)
Query: 322 RTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGP 381
RTDNVP+E ++K+VDTFPGQSIDFFGALRARVYDDEVRKW+S GIE IG +L+NS +GP
Sbjct: 1 RTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDEVRKWVSGTGIEAIGDKLLNSFDGP 60
Query: 382 PTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEA 421
PTFEQPKMT++KLL YG MLVQEQENVKRVQLA+ YL EA
Sbjct: 61 PTFEQPKMTVEKLLGYGNMLVQEQENVKRVQLAETYLKEA 100
>gi|168415082|gb|ACA23474.1| rubisco activase [Arachis diogoi]
Length = 94
Score = 164 bits (415), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 78/91 (85%), Positives = 85/91 (93%)
Query: 348 ALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQEN 407
ALRARVYDDEVRKWIS VG+E +GK+LVNSKEGPPTFEQPKMTL+KLLEYG MLVQEQEN
Sbjct: 1 ALRARVYDDEVRKWISGVGVEGVGKKLVNSKEGPPTFEQPKMTLEKLLEYGNMLVQEQEN 60
Query: 408 VKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
VKRVQLADKYL+EAALGDAN DAI G+F+G
Sbjct: 61 VKRVQLADKYLNEAALGDANADAINRGAFFG 91
>gi|356494967|ref|XP_003516352.1| PREDICTED: ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic-like [Glycine max]
Length = 118
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 76/94 (80%), Positives = 84/94 (89%)
Query: 345 FFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQE 404
FFGAL+ARVYDDEVRKWIS VG++ IGK+LVNSKEGPP F+QPKMTL KLLEYG MLVQE
Sbjct: 18 FFGALKARVYDDEVRKWISVVGVDFIGKKLVNSKEGPPNFDQPKMTLSKLLEYGNMLVQE 77
Query: 405 QENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
QENV+RVQLAD YL EAALGDAN D+I G+FYG
Sbjct: 78 QENVERVQLADMYLKEAALGDANQDSINRGTFYG 111
>gi|307104587|gb|EFN52840.1| hypothetical protein CHLNCDRAFT_26386, partial [Chlorella
variabilis]
Length = 239
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/187 (41%), Positives = 112/187 (59%), Gaps = 5/187 (2%)
Query: 183 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAGRMGGT 241
MG+ P+ +SAGELE AGEP + +R+RY AA + G+ CL I+DLDAG G T
Sbjct: 1 MGVLPVCLSAGELEDEWAGEPGRRLRERYAFAARHTESTGEATCLVISDLDAGVGVFANT 60
Query: 242 TQYTVNNQMVNATLMNIADNPTNVQLPGMYN--QEENPRVPIIVTGNDFSTLYAPLIRDG 299
TVN Q + +LM + D+P V + + RVPI VT ND + LYAPL+R+G
Sbjct: 61 AN-TVNTQNLQGSLMALCDDPLLVSAGQEWAAVRRRALRVPIYVTANDLTCLYAPLVREG 119
Query: 300 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 359
RM+KFY+ P+R + +F + D+ L+D FP Q +DFFG+++AR+ D VR
Sbjct: 120 RMDKFYFEPSRGEMAAALRALF-APQLGAADVKVLLDAFPEQPMDFFGSIKARLVDGAVR 178
Query: 360 KWISEVG 366
+W+ + G
Sbjct: 179 RWLHQAG 185
>gi|187470377|gb|ACD11149.1| ribulose bisphosphate carboxylase activase [Lemna minor]
Length = 68
Score = 139 bits (349), Expect = 3e-30, Method: Composition-based stats.
Identities = 66/68 (97%), Positives = 66/68 (97%)
Query: 170 QGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIN 229
QGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII KGKMC LFIN
Sbjct: 1 QGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIAKGKMCALFIN 60
Query: 230 DLDAGAGR 237
DLDAGAGR
Sbjct: 61 DLDAGAGR 68
>gi|308810312|ref|XP_003082465.1| 26S proteasome regulatory complex, ATPase RPT4 (ISS) [Ostreococcus
tauri]
gi|116060933|emb|CAL57411.1| 26S proteasome regulatory complex, ATPase RPT4 (ISS) [Ostreococcus
tauri]
Length = 555
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 74/120 (61%), Gaps = 5/120 (4%)
Query: 256 MNIADNPTNVQLPGMYNQEE----NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
MN+ D+P V + + RVPIIVT ND ST+YAPL+RDGRM+K+YW+PTR+
Sbjct: 1 MNLCDHPELVSVGEDRGDDGRNMVTARVPIIVTANDLSTVYAPLLRDGRMDKWYWSPTRD 60
Query: 312 DRIGVCSGIFR-TDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERI 370
D + +F+ + E +LVD FPGQ +DFFGA RA+VYDD + W+ ER
Sbjct: 61 DICDIVHALFKDEEKWTYEATARLVDEFPGQPLDFFGAARAKVYDDAIHHWMCVDARERC 120
>gi|18476502|gb|AAL50316.1| ultraviolet-B-repressible rubisco activase [Pisum sativum]
Length = 50
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/50 (90%), Positives = 48/50 (96%)
Query: 387 PKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSF 436
PKMTL+KLLEYG MLVQEQENVKRVQLADKYLSEAALGDAN+DAIK G+F
Sbjct: 1 PKMTLEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANEDAIKRGTF 50
>gi|62176924|emb|CAG25592.1| putative rubisco activase [Triticum durum]
Length = 50
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/50 (80%), Positives = 46/50 (92%)
Query: 389 MTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
MT++KLLEYG MLVQEQ+NVKRVQLAD Y+S+AALGDAN DA+K GSFYG
Sbjct: 1 MTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 50
>gi|145566934|sp|P85111.1|RCA_VITSX RecName: Full=Ribulose bisphosphate carboxylase/oxygenase activase,
chloroplastic; Short=RA; Short=RuBisCO activase
Length = 62
Score = 78.6 bits (192), Expect = 6e-12, Method: Composition-based stats.
Identities = 40/61 (65%), Positives = 42/61 (68%), Gaps = 17/61 (27%)
Query: 182 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGT 241
+MGINPIMMSAGELESGNAGEPA KMCCLFINDLDAGAGR+G
Sbjct: 15 RMGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAGRIGVC 57
Query: 242 T 242
T
Sbjct: 58 T 58
>gi|22255887|gb|AAM94806.1| rubisco activase alpha [Gossypium hirsutum]
Length = 76
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/39 (82%), Positives = 36/39 (92%)
Query: 400 MLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
MLV EQENVKRVQLADKYLSEAALG+AN+D+I G+FYG
Sbjct: 1 MLVAEQENVKRVQLADKYLSEAALGEANEDSINRGTFYG 39
>gi|22255885|gb|AAM94805.1| rubisco activase beta [Gossypium hirsutum]
Length = 37
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/37 (89%), Positives = 35/37 (94%)
Query: 400 MLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSF 436
MLV EQENVKRVQLADKYLSEAALG+ANDDAIK G+F
Sbjct: 1 MLVAEQENVKRVQLADKYLSEAALGNANDDAIKRGAF 37
>gi|301323237|gb|ADK70390.1| rubisco activase [Musa AB Group]
Length = 68
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/32 (90%), Positives = 29/32 (90%)
Query: 407 NVKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
NVKRVQLADKYLSEAALGDAN DAIK G FYG
Sbjct: 2 NVKRVQLADKYLSEAALGDANQDAIKTGQFYG 33
>gi|428221330|ref|YP_007105500.1| AAA ATPase [Synechococcus sp. PCC 7502]
gi|427994670|gb|AFY73365.1| AAA+ family ATPase [Synechococcus sp. PCC 7502]
Length = 515
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 92/200 (46%), Gaps = 29/200 (14%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-MSAGELESGNAGEPAKLIRQRY 211
LP+ K L++GI +G GKS C A + P++ + G+L G+ RQ
Sbjct: 265 LPHPKGVLLMGI---QGTGKSL-CAKAIAHLWNLPLLRLDVGKLFGSLLGQSESRTRQTI 320
Query: 212 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 271
++A I C L+I+++D G + G + + +Q V ATL+ +
Sbjct: 321 QQAEAI----SPCILWIDEIDKAFGGISGISMDSGTSQRVFATLLT-------------W 363
Query: 272 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR---IGVCSGIFRTDNV 326
QE+ V I+ T N+ L L+R GR ++ ++ P E+R + V FR D+V
Sbjct: 364 MQEKTSSVFIVATANNIHVLPPELLRKGRFDEIFFINLPNYEERKQILKVHLQRFRPDSV 423
Query: 327 P--KEDIVKLVDTFPGQSID 344
+ I ++ + F G I+
Sbjct: 424 AFDLDAIAQITEDFSGAEIE 443
>gi|337283526|ref|YP_004623000.1| cell division control protein [Pyrococcus yayanosii CH1]
gi|334899460|gb|AEH23728.1| cell division control protein [Pyrococcus yayanosii CH1]
Length = 836
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 112/259 (43%), Gaps = 31/259 (11%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 584 LYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKA----RQAAP 639
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A G V ++++N L M EEN V +I
Sbjct: 640 AIIFIDEIDAIAPARGAVEGERVTDRLINQLLTE------------MDGIEENSGVVVIA 687
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP------KEDIVKLVDT 337
N L L+R GR ++ P ++R + T N+P E++ K +
Sbjct: 688 ATNRPDILDPALLRPGRFDRLILVPAPDERARLEIFRVHTRNMPLAKDVNLEELAKKTEG 747
Query: 338 FPGQSIDFF---GALRA--RVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLD 392
+ G I AL A RV ++ + E E +GK +V K+ ++ K ++
Sbjct: 748 YTGADIAALVREAALNAMRRVLLTLPKRLVEEENEEFLGKLVVTRKDFEEALKRVKPSVT 807
Query: 393 K-LLEYGRMLVQEQENVKR 410
K ++EY R Q +E+ KR
Sbjct: 808 KYMMEYYR---QFEESRKR 823
>gi|308798689|ref|XP_003074124.1| Nuclear AAA ATPase (VCP subfamily) (ISS) [Ostreococcus tauri]
gi|116000296|emb|CAL49976.1| Nuclear AAA ATPase (VCP subfamily) (ISS) [Ostreococcus tauri]
Length = 723
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 16/150 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
VK P L + G G GK+ V A+ G + +S+G++ AGE K +R+ + A
Sbjct: 238 VKFPRGLLLHGPPGTGKTEAVRAVSAEAGAETLTVSSGDVAGAYAGESEKRLRKVFERAR 297
Query: 216 DIIKKGKMCCLFINDLDA--GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 273
++KKG C + I++LDA R G + V Q++ TLM+ A + V
Sbjct: 298 KLVKKGSPCVIVIDELDAMCPTRRDGNAHEARVVAQLL--TLMDGAGESSEVH------- 348
Query: 274 EENPRVPIIVTGNDFSTLYAPLIRDGRMEK 303
VP++ T + + + L R GR ++
Sbjct: 349 -----VPVVATTSRPNAIDPALRRPGRFDR 373
>gi|256810701|ref|YP_003128070.1| AAA ATPase [Methanocaldococcus fervens AG86]
gi|256793901|gb|ACV24570.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus fervens
AG86]
Length = 903
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 105/232 (45%), Gaps = 26/232 (11%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V+ P + ++G G GK+ + V + G N I + E+ S GE K IR+ +R+A
Sbjct: 483 VRPPKGVLLFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKA- 541
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ C +F +++DA A + G V +++VN L +L GM EE
Sbjct: 542 ---RQSAPCIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLL---------TELDGM---EE 586
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV------CSGIFRTDNVPKE 329
V +I N + L+R GR+++ P +++ + G+ ++V E
Sbjct: 587 PKDVVVIAATNRPDIIDPALLRPGRLDRVILVPVPDEKARLDIFKIHTRGMNLAEDVDLE 646
Query: 330 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVNSKEG 380
++ K + + G I+ A + VRK I + GIE + L+N +G
Sbjct: 647 ELAKKTEGYTGADIEALCREAAMLA---VRKSIGKPWGIETALRDLINYLQG 695
>gi|50553670|ref|XP_504246.1| YALI0E21868p [Yarrowia lipolytica]
gi|49650115|emb|CAG79841.1| YALI0E21868p [Yarrowia lipolytica CLIB122]
Length = 410
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 185 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFGYA- 243
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T +++ + TLM + + G
Sbjct: 244 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSSDREIQRTLMELLNQMDGFDYLG------ 292
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
+ +I+ N TL L+R GR+++ P + R+ V +G+ + + E
Sbjct: 293 --KTKVIMATNRPDTLDPALLRAGRLDRKIEIPLPNEAGRLEVFKIHAAGVQKQGEIDYE 350
Query: 330 DIVKLVDTFPGQSI 343
+VK+ D F G I
Sbjct: 351 ALVKMSDGFNGADI 364
>gi|312068505|ref|XP_003137245.1| proteasome 26S subunit [Loa loa]
gi|307767590|gb|EFO26824.1| 26S protease regulatory subunit 10B [Loa loa]
Length = 397
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 101/218 (46%), Gaps = 29/218 (13%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A++IR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 235
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + RV II+
Sbjct: 236 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGRVKIIM 285
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ V S I + ++ E +VKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEVLKIHASKITKHGDIDYEAVVKLSDG 345
Query: 338 FPGQSID-------FFG--ALRARVYDDEVRKWISEVG 366
F G + F A R V D++ K + +VG
Sbjct: 346 FSGADLRNVCTEAGLFAIRAEREYVIDEDFMKAVRKVG 383
>gi|402590003|gb|EJW83934.1| hypothetical protein WUBG_05154 [Wuchereria bancrofti]
Length = 397
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 101/218 (46%), Gaps = 29/218 (13%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A++IR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 235
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + RV II+
Sbjct: 236 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGRVKIIM 285
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ V S I + ++ E +VKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEVLKIHASKITKHGDIDYEAVVKLSDG 345
Query: 338 FPGQSID-------FFG--ALRARVYDDEVRKWISEVG 366
F G + F A R V D++ K + +VG
Sbjct: 346 FSGADLRNVCTEAGLFAIRAEREYVIDEDFMKAVRKVG 383
>gi|170586148|ref|XP_001897842.1| Probable 26S protease regulatory subunit S10B [Brugia malayi]
gi|158594737|gb|EDP33319.1| Probable 26S protease regulatory subunit S10B, putative [Brugia
malayi]
Length = 467
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 101/218 (46%), Gaps = 29/218 (13%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A++IR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 235
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + RV II+
Sbjct: 236 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGRVKIIM 285
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ V S I + ++ E +VKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEVLKIHASKITKHGDIDYEAVVKLSDG 345
Query: 338 FPGQSID-------FFG--ALRARVYDDEVRKWISEVG 366
F G + F A R V D++ K + +VG
Sbjct: 346 FSGADLRNVCTEAGLFAIRAEREYVIDEDFMKAVRKVG 383
>gi|356517889|ref|XP_003527618.1| PREDICTED: 26S protease regulatory subunit 10B homolog A-like
[Glycine max]
Length = 387
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 94/194 (48%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K+P + ++G G GK+ + + + + + + + + GE A+LIR+ ++ A
Sbjct: 167 MKLPKGVLLYGPPGTGKTLLAKAISCNVDAKFLKVVSSTIIHKSIGESARLIREMFKYA- 225
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ + C +F++++DA AGR + + ++ + TL + + QL G+ + E
Sbjct: 226 ---RNHQPCIIFMDEIDAIAGRRSSNRKGS--DREIQRTLKELLN-----QLDGLNHLE- 274
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGV----CSGIFRTDNVPKE 329
+V II+ N L L+R GR+++ P R+ R+ + G+ + + E
Sbjct: 275 --KVKIIMATNRLDVLDPALLRHGRIDRKIEITLPNRKSRMEIFKIHAEGVTKRGEIDYE 332
Query: 330 DIVKLVDTFPGQSI 343
+VKL + F G +
Sbjct: 333 AVVKLAEGFNGADL 346
>gi|11498895|ref|NP_070126.1| cell division protein CDC48 [Archaeoglobus fulgidus DSM 4304]
gi|41688749|sp|O28972.1|Y1297_ARCFU RecName: Full=Cell division cycle protein 48 homolog AF_1297
gi|2649281|gb|AAB89948.1| cell division control protein 48, AAA family (cdc48-1)
[Archaeoglobus fulgidus DSM 4304]
Length = 733
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 89/196 (45%), Gaps = 22/196 (11%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 214
N+K P + ++G G GK+ + V + N I + EL S GE K +R+ +R+A
Sbjct: 485 NIKPPRGILLFGPPGTGKTLLAKAVANESNANFISVKGPELLSKWVGESEKHVREMFRKA 544
Query: 215 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 274
+ C +F +++D+ A R GG V ++V+ L +L G+ E
Sbjct: 545 RQVAP----CVIFFDEIDSLAPRRGGIGDSHVTERVVSQLL---------TELDGL---E 588
Query: 275 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFR----TDNVPK 328
E V +I N + L+R GR+E+ + P ++ R+ + R D+V
Sbjct: 589 ELKDVVVIAATNRPDMIDPALLRPGRLERHIYIPPPDKKARVEIFKIHLRGKPLADDVNI 648
Query: 329 EDIVKLVDTFPGQSID 344
E++ + + + G I+
Sbjct: 649 EELAEKTEGYSGADIE 664
>gi|327400638|ref|YP_004341477.1| AAA family ATPase [Archaeoglobus veneficus SNP6]
gi|327316146|gb|AEA46762.1| AAA family ATPase, CDC48 subfamily [Archaeoglobus veneficus SNP6]
Length = 734
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 16/154 (10%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 214
++K P + ++G G GK+ + V + N I + EL S GE K +R+ +R+A
Sbjct: 486 DIKPPKGILLFGPPGTGKTLLAKAVANESNANFISVKGPELLSKWVGESEKHVREMFRKA 545
Query: 215 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 274
+ C LF +++D+ A R GG V ++V+ L +L GM E
Sbjct: 546 RQVAP----CVLFFDEIDSLAPRRGGGADSHVTERVVSQLL---------TELDGM---E 589
Query: 275 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
E V +I N + L+R GR+E+ + P
Sbjct: 590 ELKDVVVIAATNRPDIVDPALLRPGRIERHIYIP 623
>gi|225717030|gb|ACO14361.1| 26S protease regulatory subunit S10B [Esox lucius]
Length = 389
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V ++M N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQMDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQGTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ R D + + SG I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHVELPNEQARLDILKIHSGPITKHGEIDYEAIVKLSDG 337
Query: 338 FPGQSI 343
F G +
Sbjct: 338 FNGADL 343
>gi|297297860|ref|XP_001082028.2| PREDICTED: 26S protease regulatory subunit S10B-like [Macaca
mulatta]
Length = 409
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 192 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 247
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM++ + Q+ G RV +I+
Sbjct: 248 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMDLLN-----QMDGFDTLH---RVKMIM 297
Query: 284 TGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIGVCSG-IFRTDNVPKEDIVKLVDT 337
T N TL L+R GR+++ R D + + +G I + + E IVKL D
Sbjct: 298 TTNRPDTLDLALLRPGRLDRKIHIDLPNEQARLDTLKIHAGPITKHGEIDYEAIVKLSDG 357
Query: 338 FPGQSI 343
F G +
Sbjct: 358 FNGADL 363
>gi|261403322|ref|YP_003247546.1| ATPase AAA [Methanocaldococcus vulcanius M7]
gi|261370315|gb|ACX73064.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus vulcanius
M7]
Length = 903
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 91/195 (46%), Gaps = 22/195 (11%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V+ P + ++G G GK+ + V + G N I + E+ S GE K IR+ +R+A
Sbjct: 483 VRPPKGVLLFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKA- 541
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ C +F +++DA A + G V +++VN L +L GM EE
Sbjct: 542 ---RQSAPCIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLL---------TELDGM---EE 586
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCSGIFRTDNVPK----E 329
V +I N + + L+R GR+++ P ++ R+ + R+ N+ + E
Sbjct: 587 PKDVIVIAATNRPDIIDSALLRPGRLDRVILVPVPDEKARLDILKIHTRSMNLDEDVNLE 646
Query: 330 DIVKLVDTFPGQSID 344
++ K + + G I+
Sbjct: 647 ELAKKTEGYTGADIE 661
>gi|432945585|ref|XP_004083671.1| PREDICTED: 26S protease regulatory subunit 10B-like [Oryzias
latipes]
Length = 377
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 160 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 215
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 216 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 265
Query: 284 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + S I + + E IVKL D
Sbjct: 266 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSSPITKHGEIDYEAIVKLSDG 325
Query: 338 FPGQSI 343
F G +
Sbjct: 326 FNGADL 331
>gi|229367834|gb|ACQ58897.1| 26S protease regulatory subunit S10B [Anoplopoma fimbria]
Length = 389
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 284 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + S I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHASPITKHGEIDYEAIVKLSDG 337
Query: 338 FPGQSI 343
F G +
Sbjct: 338 FNGADL 343
>gi|355745594|gb|EHH50219.1| hypothetical protein EGM_01010, partial [Macaca fascicularis]
Length = 392
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + +++ N + + + + GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAIASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 230
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM++ + Q+ G RV +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMDLLN-----QMDGFDTLH---RVKMIM 280
Query: 284 TGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIGVCSG-IFRTDNVPKEDIVKLVDT 337
T N TL L+R GR+++ R D + + +G I + + E IVKL D
Sbjct: 281 TTNRPDTLDLALLRPGRLDRKIHIDLPNEQARLDTLKIHAGPITKHGEIDYEAIVKLSDG 340
Query: 338 FPGQSI 343
F G +
Sbjct: 341 FNGADL 346
>gi|289192266|ref|YP_003458207.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus sp.
FS406-22]
gi|288938716|gb|ADC69471.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus sp.
FS406-22]
Length = 903
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 92/198 (46%), Gaps = 28/198 (14%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V+ P + ++G G GK+ + V + G N I + E+ S GE K IR+ +R+A
Sbjct: 483 VRPPKGVLLFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKA- 541
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ C +F +++DA A + G V +++VN L +L GM E
Sbjct: 542 ---RQSAPCIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLL---------TELDGM----E 585
Query: 276 NPRVPIIVTGNDFSTLYAP-LIRDGRMEKFYWAPTREDRIGVCSGIFR--------TDNV 326
P+ I++ + + P L+R GR+++ P +++ + IF+ ++V
Sbjct: 586 EPKDVIVIAATNRPDIIDPALLRPGRLDRVILVPVPDEKARL--DIFKIHTRAMNLAEDV 643
Query: 327 PKEDIVKLVDTFPGQSID 344
E++ K + + G I+
Sbjct: 644 SLEELAKKTEGYTGADIE 661
>gi|410928215|ref|XP_003977496.1| PREDICTED: 26S protease regulatory subunit 10B-like isoform 1
[Takifugu rubripes]
Length = 389
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 284 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + S I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSSPITKHGEIDYEAIVKLSDG 337
Query: 338 FPGQSI 343
F G +
Sbjct: 338 FNGADL 343
>gi|15920392|ref|NP_376061.1| hypothetical protein ST0209 [Sulfolobus tokodaii str. 7]
Length = 689
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 92/216 (42%), Gaps = 19/216 (8%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + G N I + E+ S GE K IR+ +R+A ++
Sbjct: 424 LFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAP 479
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+F +++DA A G TT V ++VN L ++ G+ E V II
Sbjct: 480 TVIFFDEIDAIAPMRGLTTDSGVTERIVNQLL---------AEMDGIEKLEN---VVIIA 527
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP-KEDIVKLVDTFPGQS 342
N L L+R GR ++ + P + R T NVP EDI +D ++
Sbjct: 528 ATNRPDILDPALLRPGRFDRLIYVPPPDKRARAEILKVHTRNVPLAEDIT--LDELAEKT 585
Query: 343 IDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSK 378
+ GA A + + + I E E + K N K
Sbjct: 586 EGYTGADLAALVREATLRAIREEMTECMKKADENCK 621
>gi|213512535|ref|NP_001134354.1| 26S protease regulatory subunit S10B [Salmo salar]
gi|209732644|gb|ACI67191.1| 26S protease regulatory subunit S10B [Salmo salar]
Length = 389
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V ++M N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQMDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 284 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVC---SG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + SG I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSGPITKHGEIDYEAIVKLSDG 337
Query: 338 FPGQSI 343
F G +
Sbjct: 338 FNGADL 343
>gi|198285437|gb|ACH85257.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Salmo
salar]
Length = 387
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V ++M N + + + + GE A+LIR+ + A D +
Sbjct: 170 LYGPPGTGKTLLARAVASQMDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 225
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 226 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 275
Query: 284 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVC---SG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + SG I + + E IVKL D
Sbjct: 276 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSGPITKHGEIDYEAIVKLSDG 335
Query: 338 FPGQSI 343
F G +
Sbjct: 336 FNGADL 341
>gi|414078652|ref|YP_006997970.1| AAA ATPase [Anabaena sp. 90]
gi|413972068|gb|AFW96157.1| AAA ATPase [Anabaena sp. 90]
Length = 532
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 23/167 (13%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
LP+ K L+ GI +G GKS + + A+ + + + G L G GE IRQ +
Sbjct: 277 LPSPKGVLLAGI---QGTGKSLSAKTIAAEWKLPLLRLDVGRLFGGIVGESESRIRQVIK 333
Query: 213 EAADIIKKGKMCCLFINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 271
+++ C LFI++ D G + GT + ++ V +L+ +
Sbjct: 334 ----LVEAIAPCVLFIDEADKAFGNVNTGTDGDSGTSRRVFGSLIT-------------W 376
Query: 272 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV 316
QE+ V I++T N+ L A L+R GR+++ +W P +++R+ +
Sbjct: 377 MQEKVSPVFIVLTANNVEILPAELLRKGRLDEIFWLNLPNQKERLQI 423
>gi|328354365|emb|CCA40762.1| 26S protease regulatory subunit S10B [Komagataella pastoris CBS
7435]
Length = 454
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 229 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFSYA- 287
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 288 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 336
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK------E 329
+ +I+ N TL L+R GR+++ P + + T NV K E
Sbjct: 337 --QTKVIMATNRPDTLDPALLRAGRLDRKIEIPLPNESGRLEVFKIHTANVKKHGEFDFE 394
Query: 330 DIVKLVDTFPGQSI 343
+VK+ D F G I
Sbjct: 395 AVVKMSDGFNGADI 408
>gi|344230035|gb|EGV61920.1| hypothetical protein CANTEDRAFT_107330 [Candida tenuis ATCC 10573]
Length = 835
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 89/198 (44%), Gaps = 24/198 (12%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+ P + +WG G GK+ + V + N I + EL + GE + IRQ ++ A
Sbjct: 564 ITAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFQRA- 622
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ C +F ++LDA R + + ++++VN L +L G+
Sbjct: 623 ---RASVPCIIFFDELDALVPRRDASLSES-SSRVVNTLL---------TELDGL----- 664
Query: 276 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKEDI 331
N R I V G N + +IR GR++K + PT E+R+ + + +++ P ++
Sbjct: 665 NDRKGIFVIGATNRPDMIDPAMIRPGRLDKSLYIELPTEEERLDILKTLIKSNGTPIDES 724
Query: 332 VKLVDTFPGQSI-DFFGA 348
V L D Q +F GA
Sbjct: 725 VNLKDIVYNQKCRNFSGA 742
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 18/172 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V+ P + ++G G GK+ + ++ + I +SA + SG +GE K +R+ + +A
Sbjct: 225 VEPPRGVLLYGPPGCGKTTVANALAGELQVPFISISAPSVVSGMSGESEKKLREIFEDAK 284
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+I C +FI+++D+ + G Q + ++V A L+ + D T + G
Sbjct: 285 NIAP----CLVFIDEIDSITPKRDGGAQREMERRIV-AQLLTLMDELTLDKTNGK----- 334
Query: 276 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRT 323
P+IV G N +L L R GR ++ P+ E RI + + T
Sbjct: 335 ----PVIVIGATNRPDSLDPALRRAGRFDREICLNVPSEEQRISILKAMTST 382
>gi|342306104|dbj|BAK54193.1| ATPase [Sulfolobus tokodaii str. 7]
Length = 773
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 92/216 (42%), Gaps = 19/216 (8%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + G N I + E+ S GE K IR+ +R+A ++
Sbjct: 508 LFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAP 563
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+F +++DA A G TT V ++VN L ++ G+ E V II
Sbjct: 564 TVIFFDEIDAIAPMRGLTTDSGVTERIVNQLL---------AEMDGIEKLE---NVVIIA 611
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP-KEDIVKLVDTFPGQS 342
N L L+R GR ++ + P + R T NVP EDI +D ++
Sbjct: 612 ATNRPDILDPALLRPGRFDRLIYVPPPDKRARAEILKVHTRNVPLAEDIT--LDELAEKT 669
Query: 343 IDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSK 378
+ GA A + + + I E E + K N K
Sbjct: 670 EGYTGADLAALVREATLRAIREEMTECMKKADENCK 705
>gi|308322419|gb|ADO28347.1| 26S protease regulatory subunit s10b [Ictalurus furcatus]
Length = 389
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ V TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREVQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 284 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVC---SG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + SG I + ++ E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSGPITKHGDIDYEAIVKLSDG 337
Query: 338 FPGQSI 343
F G +
Sbjct: 338 FNGADL 343
>gi|331699452|ref|YP_004335691.1| Microtubule-severing ATPase [Pseudonocardia dioxanivorans CB1190]
gi|326954141|gb|AEA27838.1| Microtubule-severing ATPase [Pseudonocardia dioxanivorans CB1190]
Length = 802
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 99/230 (43%), Gaps = 27/230 (11%)
Query: 110 MSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVV--VHITKNFLNLPNVKVPLILGIWGG 167
MSS + + G LD+ D + A + V+ + +F L V P + ++G
Sbjct: 525 MSSSETLHTG--GIGLDDVGDMTEVKQALTEAVLWPLQYPDSFARL-GVDAPRGVLLYGP 581
Query: 168 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227
G GK+F + +N + + EL GE + +R+ +R+A+D +F
Sbjct: 582 PGCGKTFLLRALAGTGQLNVLSVKGAELLDKYVGESERAVRELFRKASD----AAPALVF 637
Query: 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 287
++++DA A R GG+T V +++V A L +L G E ++V +
Sbjct: 638 LDEVDALAPRRGGSTDSGVADRVVAALL---------TELDGAQPLREV----VVVGATN 684
Query: 288 FSTLYAP-LIRDGRMEKFYWAPT--REDRIGVCSGIFRTDNVPKEDIVKL 334
L P L+R GR+E+ + P E R + R N P D V L
Sbjct: 685 RPELIDPALLRPGRLERLVYVPPPDAEARAAILRAAGR--NTPLADDVDL 732
>gi|254573410|ref|XP_002493814.1| One of six ATPases of the 19S regulatory particle of the 26S
proteasome [Komagataella pastoris GS115]
gi|238033613|emb|CAY71635.1| One of six ATPases of the 19S regulatory particle of the 26S
proteasome [Komagataella pastoris GS115]
Length = 416
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 191 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFSYA- 249
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 250 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 298
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK------E 329
+ +I+ N TL L+R GR+++ P + + T NV K E
Sbjct: 299 --QTKVIMATNRPDTLDPALLRAGRLDRKIEIPLPNESGRLEVFKIHTANVKKHGEFDFE 356
Query: 330 DIVKLVDTFPGQSI 343
+VK+ D F G I
Sbjct: 357 AVVKMSDGFNGADI 370
>gi|225715516|gb|ACO13604.1| 26S protease regulatory subunit S10B [Esox lucius]
Length = 389
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVTSQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ V TLM + + Q+ G E RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREVQRTLMELLN-----QMDGF---ETLHRVKMIM 277
Query: 284 TGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIGVCSG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ R D + + SG I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARMDILKIHSGPITKHGEMDYEAIVKLSDG 337
Query: 338 FPGQSI 343
F G +
Sbjct: 338 FNGADL 343
>gi|58259998|ref|XP_567409.1| ATPase [Cryptococcus neoformans var. neoformans JEC21]
gi|134116132|ref|XP_773237.1| hypothetical protein CNBJ0160 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255859|gb|EAL18590.1| hypothetical protein CNBJ0160 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229459|gb|AAW45892.1| ATPase, putative [Cryptococcus neoformans var. neoformans JEC21]
Length = 405
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V A + N + + + + GE A+LIR+ + A ++ +
Sbjct: 188 LYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARLIREMFAYA----REHEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR +Q T ++ + TLM + + Q+ G E R II+
Sbjct: 244 CVIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLN-----QMDGF---ESLGRTKIIM 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + + ++ ++ E IVKL D
Sbjct: 294 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAKKVNKSGDIDYEAIVKLSDG 353
Query: 338 FPGQSI 343
F G +
Sbjct: 354 FNGADL 359
>gi|307196021|gb|EFN77746.1| Peroxisome biogenesis factor 1 [Harpegnathos saltator]
Length = 929
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 91/202 (45%), Gaps = 25/202 (12%)
Query: 150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 209
F N P +K+ + ++G G GK+ + + + G+N I + EL S G + +R
Sbjct: 666 FRNAP-IKLQSGVLLYGMPGTGKTMLAKAIAGECGVNLISIKGPELLSKYIGVSEESVRN 724
Query: 210 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 269
+ A ++ K C LF ++ D+ A R G V +++VN L QL G
Sbjct: 725 VFERA----RRAKPCVLFFDEFDSLAPRRGHDNT-GVTDRVVNQLL---------TQLDG 770
Query: 270 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP 327
+ ++E V I+ + L L+R GR++K P +R + + + ++ NV
Sbjct: 771 VEDREG---VAIVAASSRPDMLDPALLRPGRLDKCLHCPLPNETERREIFTELCKSQNVD 827
Query: 328 K-----EDIVKLVDTFPGQSID 344
E++ +L D F G I+
Sbjct: 828 SATLDLEELARLSDGFTGADIN 849
>gi|401409344|ref|XP_003884120.1| hypothetical protein NCLIV_045220 [Neospora caninum Liverpool]
gi|325118538|emb|CBZ54089.1| hypothetical protein NCLIV_045220 [Neospora caninum Liverpool]
Length = 398
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + M N + + A + GE A++IR+ + A
Sbjct: 174 IKTPKGVLLYGPPGTGKTLLARAMASNMNCNFMKVVASAIVDKYIGESARVIREMFAYAR 233
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR +Q T ++ + TLM + + QL G +E
Sbjct: 234 D----HEPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLN-----QLDGF---DE 279
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 329
V II+ N L L+R GR+++ P R D + + S I + ++ E
Sbjct: 280 LGAVKIIMATNRPDVLDPALMRPGRLDRKIEIPLPNETARVDILKIHSSKIAKQGDIDYE 339
Query: 330 DIVKLVDTFPGQSI 343
I KL D F G +
Sbjct: 340 AICKLCDGFNGADL 353
>gi|47205942|emb|CAF93631.1| unnamed protein product [Tetraodon nigroviridis]
Length = 389
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 284 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + S I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSSPITKHGEIDFEAIVKLSDG 337
Query: 338 FPGQSI 343
F G +
Sbjct: 338 FNGADL 343
>gi|348537164|ref|XP_003456065.1| PREDICTED: 26S protease regulatory subunit 10B [Oreochromis
niloticus]
Length = 389
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 284 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + S I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSSPITKHGEIDFEAIVKLSDG 337
Query: 338 FPGQSI 343
F G +
Sbjct: 338 FNGADL 343
>gi|324506772|gb|ADY42884.1| 26S protease regulatory subunit 10B [Ascaris suum]
Length = 449
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 99/218 (45%), Gaps = 29/218 (13%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A++IR+ + A D +
Sbjct: 232 LYGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 287
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 288 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGKVKIIM 337
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ V S I + + E IVKL D
Sbjct: 338 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQSRLEVLKIHASKITKHGEIDYEAIVKLSDG 397
Query: 338 FPGQSID---------FFGALRARVYDDEVRKWISEVG 366
F G + A R V D++ K + +VG
Sbjct: 398 FSGADLRNVCTEAGLYAIRAEREYVIDEDFMKAVRKVG 435
>gi|221486668|gb|EEE24929.1| 26S proteasome regulatory ATPase subunit, putative [Toxoplasma
gondii GT1]
gi|221508425|gb|EEE34012.1| 26S proteasome regulatory ATPase subunit, putative [Toxoplasma
gondii VEG]
Length = 398
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + M N + + A + GE A++IR+ + A
Sbjct: 174 IKTPKGVLLYGPPGTGKTLLARAMASNMNCNFMKVVASAIVDKYIGESARVIREMFAYAR 233
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR +Q T ++ + TLM + + QL G +E
Sbjct: 234 D----HEPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLN-----QLDGF---DE 279
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 329
V II+ N L L+R GR+++ P R D + + S I + ++ E
Sbjct: 280 LGAVKIIMATNRPDVLDPALMRPGRLDRKIEIPLPNETARVDILKIHSSKIAKQGDIDYE 339
Query: 330 DIVKLVDTFPGQSI 343
I KL D F G +
Sbjct: 340 AICKLCDGFNGADL 353
>gi|15669345|ref|NP_248150.1| cell division protein CDC48 [Methanocaldococcus jannaschii DSM
2661]
gi|2492505|sp|Q58556.1|Y1156_METJA RecName: Full=Cell division cycle protein 48 homolog MJ1156
gi|1591785|gb|AAB99153.1| cell division control protein 48 (cdc48), AAA family
[Methanocaldococcus jannaschii DSM 2661]
Length = 903
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 18/159 (11%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V+ P + ++G G GK+ + V + G N I + E+ S GE K IR+ +R+A
Sbjct: 483 VRPPKGVLLFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKA- 541
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ C +F +++DA A + G V +++VN L +L GM E
Sbjct: 542 ---RQSAPCIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLL---------TELDGM----E 585
Query: 276 NPRVPIIVTGNDFSTLYAP-LIRDGRMEKFYWAPTREDR 313
P+ +++ + + P L+R GR+++ P +++
Sbjct: 586 EPKDVVVIAATNRPDIIDPALLRPGRLDRVILVPVPDEK 624
>gi|237834291|ref|XP_002366443.1| 26S proteasome regulatory ATPase subunit, putative [Toxoplasma
gondii ME49]
gi|211964107|gb|EEA99302.1| 26S proteasome regulatory ATPase subunit, putative [Toxoplasma
gondii ME49]
Length = 398
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + M N + + A + GE A++IR+ + A
Sbjct: 174 IKTPKGVLLYGPPGTGKTLLARAMASNMNCNFMKVVASAIVDKYIGESARVIREMFAYAR 233
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR +Q T ++ + TLM + + QL G +E
Sbjct: 234 D----HEPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLN-----QLDGF---DE 279
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 329
V II+ N L L+R GR+++ P R D + + S I + ++ E
Sbjct: 280 LGAVKIIMATNRPDVLDPALMRPGRLDRKIEIPLPNETARVDILKIHSSKIAKQGDIDYE 339
Query: 330 DIVKLVDTFPGQSI 343
I KL D F G +
Sbjct: 340 AICKLCDGFNGADL 353
>gi|118393771|ref|XP_001029293.1| ATPase, AAA family protein [Tetrahymena thermophila]
gi|89283465|gb|EAR81630.1| ATPase, AAA family protein [Tetrahymena thermophila SB210]
Length = 702
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 82/195 (42%), Gaps = 20/195 (10%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 214
N+ P + ++G G GK+ + V N I + EL + GE K +RQ + A
Sbjct: 456 NIASPAGVLLYGPPGCGKTLLAKAVANASKANFISVKGPELLNKYVGESEKSVRQVFSRA 515
Query: 215 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 274
K C +F ++LDA + GG + V ++VN+ L +L G E
Sbjct: 516 ----KASAPCIIFFDELDALVPKRGGDSTNQVTERVVNSLL---------AELDGF---E 559
Query: 275 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDIV 332
+V +I N + ++R GR++K + PT ++++ + + R P E V
Sbjct: 560 GRKQVYVIAATNRPDIIDPAILRGGRLDKLLYVPLPTNDEKVSILEALIR--KTPLEQDV 617
Query: 333 KLVDTFPGQSIDFFG 347
L + D F
Sbjct: 618 NLKQIAHDKRTDGFS 632
>gi|51467888|ref|NP_001003832.1| 26S protease regulatory subunit S10B [Danio rerio]
gi|49619121|gb|AAT68145.1| 26S protease regulatory subunit S10B [Danio rerio]
gi|54035446|gb|AAH83283.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Danio
rerio]
gi|94734053|emb|CAK10966.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Danio
rerio]
gi|156230928|gb|AAI52261.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Danio
rerio]
gi|161611577|gb|AAI55770.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Danio
rerio]
gi|182890938|gb|AAI65828.1| Psmc6 protein [Danio rerio]
Length = 389
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 284 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVC---SG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + SG I + ++ E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHSGPITKHGDIDYEAIVKLSDG 337
Query: 338 FPGQSI 343
F G +
Sbjct: 338 FNGADL 343
>gi|393221022|gb|EJD06507.1| ribosome biogenesis ATPase RIX7 [Fomitiporia mediterranea MF3/22]
Length = 773
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 97/242 (40%), Gaps = 35/242 (14%)
Query: 100 PMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAP--AFMDKVVVHITKNFLNLP--- 154
P+ + SY +Q L+Q + +G P + D +H + L++
Sbjct: 423 PLTEAQLTPLFISYVDFTQALKQVQPSSKREGFTTVPDVTWADIGALHTIREELHMAIVQ 482
Query: 155 -----------NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 203
+ P + +WG G GK+ + V + G N I + EL + GE
Sbjct: 483 PIRRPELFKRVGISAPCGVLLWGPPGCGKTLLAKAVANESGANFISVKGPELLNKYVGES 542
Query: 204 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 263
+ +RQ + A + C +F ++LDA R + + + +MVN L
Sbjct: 543 ERAVRQVFARA----RASSPCVIFFDELDALVPRRDDSLSES-SARMVNTLL-------- 589
Query: 264 NVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIF 321
+L G+ +E V +I N L + R GR++K + PT ++R+ + +
Sbjct: 590 -TELDGL---DERRGVHVIGATNRPDMLDPAMCRPGRLDKLLYVDLPTADERVEITRTVS 645
Query: 322 RT 323
RT
Sbjct: 646 RT 647
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 13/147 (8%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V+ P + + G G GK+ + ++G+ I +SA + SG +GE K +R + EA
Sbjct: 155 VQPPRGVLLHGPPGCGKTLLANAIAGELGVPFISVSAPSIVSGMSGESEKTLRDTFEEA- 213
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
KK C LFI+++DA + + Q + ++V A + D+ + +++ +
Sbjct: 214 ---KKNAPCLLFIDEIDAITPKR-ESAQREMERRIV-AQFLTCMDDMS-------WDKTD 261
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRME 302
N V +I N +L A L R GR +
Sbjct: 262 NKPVIVIGATNRPDSLDAALRRAGRFD 288
>gi|296108730|ref|YP_003615679.1| ATPase AAA [methanocaldococcus infernus ME]
gi|295433544|gb|ADG12715.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus infernus ME]
Length = 903
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 94/205 (45%), Gaps = 24/205 (11%)
Query: 147 TKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKL 206
K+ + V+ P + ++G G GK+ + V + G N I + E+ S GE K
Sbjct: 474 AKDVFDKIGVRPPKGVLLFGPPGTGKTLLAKAVANEAGANFISVKGPEIFSKWVGESEKA 533
Query: 207 IRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQ 266
IR+ +++A ++ C +F +++DA A + G V +++VN L +
Sbjct: 534 IREIFKKA----RQNAPCIIFFDEIDAIAPKRGRDISSGVTDKVVNQIL---------TE 580
Query: 267 LPGMYNQEENPRVPIIVTGNDFSTLYAP-LIRDGRMEKFYWAPTREDRIGV------CSG 319
L G+ E P+ +++ + + P L+R GR+++ P +++ + G
Sbjct: 581 LDGL----EEPKDVVVIAATNRPDIIDPALLRPGRLDRIILVPVPDEKARLDIFKIHTRG 636
Query: 320 IFRTDNVPKEDIVKLVDTFPGQSID 344
+ ++V E++ K + + G I+
Sbjct: 637 MSLAEDVDLEELAKKTEGYTGADIE 661
>gi|397671724|ref|YP_006513259.1| AAA ATPase [Propionibacterium propionicum F0230a]
gi|395141804|gb|AFN45911.1| ATPase, AAA family [Propionibacterium propionicum F0230a]
Length = 514
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 34/204 (16%)
Query: 166 GGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCC 225
G G GKS + + ++ G+ + + G+ R REA ++ C
Sbjct: 273 GVPGCGKSLSAKAIASQWGLPLYRLDMASVLGMYVGQS----EGRLREALATAERVAPCV 328
Query: 226 LFINDLDAG--AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
L+I++++ G G GGTT+ + + + QE +V ++
Sbjct: 329 LWIDEIEKGLAQGSDGGTTRRLIGQFL-------------------FWMQELTAKVFMVA 369
Query: 284 TGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIGVCSGIFRTDNVPKE---DIVKLV 335
T ND STL L+R GR ++ ++ AP RE+ IG+ + +E D+V L
Sbjct: 370 TANDVSTLPPELLRKGRFDELFFVDLPEAPDREEIIGLYFRKYLGAEPSQELLTDLVTLT 429
Query: 336 DTFPGQSID-FFGALRARVYDDEV 358
D F G ID + +VY D +
Sbjct: 430 DGFSGSDIDAVIHDIATKVYVDRM 453
>gi|406700181|gb|EKD03362.1| ATPase [Trichosporon asahii var. asahii CBS 8904]
Length = 399
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V A + N + + + + GE A+L+R+ + A
Sbjct: 174 IKPPKGVLLYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARLVREMFAYA- 232
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 233 ---REHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 279
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
R +I+ N TL L+R GR+++ P + R+ + GI ++ ++ E
Sbjct: 280 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAKGINKSGDIDYE 339
Query: 330 DIVKLVDTFPGQSI 343
+VKL D F G +
Sbjct: 340 AVVKLSDGFNGADL 353
>gi|401886263|gb|EJT50312.1| ATPase [Trichosporon asahii var. asahii CBS 2479]
Length = 403
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V A + N + + + + GE A+L+R+ + A
Sbjct: 178 IKPPKGVLLYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARLVREMFAYA- 236
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 237 ---REHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 283
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
R +I+ N TL L+R GR+++ P + R+ + GI ++ ++ E
Sbjct: 284 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAKGINKSGDIDYE 343
Query: 330 DIVKLVDTFPGQSI 343
+VKL D F G +
Sbjct: 344 AVVKLSDGFNGADL 357
>gi|241955559|ref|XP_002420500.1| ATPase of the AAA family, putative; ribosome biogenesis ATPase,
putative; ribosome export protein, putative [Candida
dubliniensis CD36]
gi|223643842|emb|CAX41579.1| ATPase of the AAA family, putative [Candida dubliniensis CD36]
Length = 830
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 23/183 (12%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+ P + +WG G GK+ + V + N I + EL + GE K +RQ ++ A
Sbjct: 556 IAAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESEKAVRQVFQRA- 614
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ C +F ++LDA R T+ ++++VN L +L G+
Sbjct: 615 ---RASTPCIIFFDELDALVPRR-DTSMSESSSRVVNTLL---------TELDGL----- 656
Query: 276 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDI 331
N R + V G N + ++R GR++K + PT E+R+ + + RT+N P +
Sbjct: 657 NDRKGVFVIGATNRPDMIDPAMLRPGRLDKTLYIELPTPEERLEILKTLVRTNNSPLNEN 716
Query: 332 VKL 334
V L
Sbjct: 717 VDL 719
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 83/179 (46%), Gaps = 20/179 (11%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V+ P + ++G G GK+ + ++ + I +SA + SG +GE K +R+ + EA
Sbjct: 227 VEPPRGVLLYGPPGCGKTTIANALAGELKVPFINISAPSVVSGMSGESEKKLREIFEEAK 286
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
I C +F++++DA + G Q + ++V A L+ + D T + G
Sbjct: 287 QIAP----CLIFMDEIDAITPKRDGGAQREMEKRIV-AQLLTLMDELTLEKTGGK----- 336
Query: 276 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTDNVPKED 330
P++V G N +L + L R GR ++ P E RI + + T N+ E+
Sbjct: 337 ----PVVVIGATNRPDSLDSALRRAGRFDREICLNVPNEEQRISILKAM--TKNIKLEN 389
>gi|406605633|emb|CCH42949.1| 26S protease subunit [Wickerhamomyces ciferrii]
Length = 418
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 193 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFSYA- 251
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 252 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 300
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK------E 329
+ +I+ N TL L+R GR+++ P + + T+ + K E
Sbjct: 301 --QTKVIMATNRPDTLDPALLRAGRLDRKIEIPLPNEAGRLEVFKIHTEKISKQGEFDFE 358
Query: 330 DIVKLVDTFPGQSI 343
+VK+ D F G I
Sbjct: 359 AVVKMSDGFNGADI 372
>gi|344304021|gb|EGW34270.1| hypothetical protein SPAPADRAFT_59691 [Spathaspora passalidarum
NRRL Y-27907]
Length = 413
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 73/296 (24%), Positives = 120/296 (40%), Gaps = 56/296 (18%)
Query: 90 KGMVDTLFQAPMESGTHYAVMSSYDYISQGLR---QYSLD-NTLDGLYIAPAFMDKVVVH 145
K + D F SG Y V + LR + SLD TL + I P +D +V +
Sbjct: 86 KQLDDERFIVKASSGPRYIVGCRNTIKKENLRNGVRVSLDMTTLTIMRILPREVDPLVYN 145
Query: 146 IT----------------------KNFLNLP----------NVKVPLILGIWGGKGQGKS 173
+T + + LP +K P + ++G G GK+
Sbjct: 146 MTTFEPGEISFNGIGGLNEQIRELREVIELPLKNPELFTRVGIKSPKGVLLYGPPGTGKT 205
Query: 174 FQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233
+ V A +G N I A + GE A+LIR+ + A K+ + C +F++++DA
Sbjct: 206 LLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFSYA----KEHEPCIIFMDEVDA 261
Query: 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 293
GR ++ T ++ + TLM + + Q+ G + + II+ N TL
Sbjct: 262 IGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQTKIIMATNRPDTLDP 311
Query: 294 PLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK------EDIVKLVDTFPGQSI 343
L+R GR+++ P + + T V K E +VK+ D F G I
Sbjct: 312 ALLRAGRLDRKIEIPLPNESGRLEIFKIHTSKVSKHGEFDFEAMVKMSDGFNGADI 367
>gi|452846664|gb|EME48596.1| hypothetical protein DOTSEDRAFT_49041 [Dothistroma septosporum
NZE10]
Length = 710
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 109/242 (45%), Gaps = 27/242 (11%)
Query: 139 MDKVVVHITKNFLNLPNVKVPLILGIW--GGKGQGKSFQCELVFAKMGINPIMMSAGELE 196
M++++V + + +PL G+ G G GK+ A++G+ + + +
Sbjct: 156 MNRLIVMPIGCYEDYHAASLPLPKGVLLHGPPGCGKTMLARAYAAELGVPFVEILGPSIV 215
Query: 197 SGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLM 256
SG +GE K +R R+ EA KK C LFI+++DA A + T+Q + ++V L+
Sbjct: 216 SGMSGESEKGVRDRFEEA----KKNAPCLLFIDEIDAIAPKR-ETSQSQMEKRIVAQLLV 270
Query: 257 NIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM--EKFYWAPTREDRI 314
++ + N+E P V ++ N +L L R GR E P + R
Sbjct: 271 SMDE----------INKEGGPPVIVLAATNRPDSLDPALRRGGRFGTEININVPNEQVRQ 320
Query: 315 GVCSGIFRTDNVPKE-DIVKLV-DT--FPGQSIDFF----GALRARVYDDEVRKWISEVG 366
+ R+ + + D+VKL DT F G + GA + Y++ + +E+G
Sbjct: 321 SILETQTRSMTLAADVDLVKLAKDTAGFVGADLHDLVGKAGAHQMERYEEALEHQATEMG 380
Query: 367 IE 368
+E
Sbjct: 381 LE 382
>gi|298674960|ref|YP_003726710.1| AAA ATPase [Methanohalobium evestigatum Z-7303]
gi|298287948|gb|ADI73914.1| AAA family ATPase, CDC48 subfamily [Methanohalobium evestigatum
Z-7303]
Length = 733
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 82/196 (41%), Gaps = 22/196 (11%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 214
N P + ++G G GK+ + V + N I + EL S GE + IR+ +R+A
Sbjct: 480 NTTPPRGVILYGPPGTGKTMLAKAVSGESEANFISIKGPELLSKYVGESERAIRETFRKA 539
Query: 215 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 274
K+ +FI+++D+ A R G + V ++V+ L M E
Sbjct: 540 ----KQAAPTVIFIDEIDSIAPRRGKSNDSNVTERVVSQILTE------------MDGIE 583
Query: 275 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPK 328
E V +I N + L+R GR ++ + P +E R + G DNV
Sbjct: 584 ELKDVVVIAATNRLDIVDPALLRPGRFDRMVYVSIPEKESRKMIFNIHLEGKPLADNVDI 643
Query: 329 EDIVKLVDTFPGQSID 344
E + + + + G I+
Sbjct: 644 EKLANITEGYSGADIE 659
>gi|91094943|ref|XP_967788.1| PREDICTED: similar to 26S protease regulatory subunit S10b
[Tribolium castaneum]
gi|270016772|gb|EFA13218.1| hypothetical protein TcasGA2_TC010321 [Tribolium castaneum]
Length = 392
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 90/186 (48%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYAKD----HQP 230
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 280
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P R + + + +G I + + E IVKL DT
Sbjct: 281 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGEIDYEAIVKLSDT 340
Query: 338 FPGQSI 343
F G +
Sbjct: 341 FNGADL 346
>gi|15897351|ref|NP_341956.1| AAA ATPase [Sulfolobus solfataricus P2]
gi|13813572|gb|AAK40746.1| AAA family ATPase [Sulfolobus solfataricus P2]
Length = 769
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 93/212 (43%), Gaps = 28/212 (13%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
++ P + ++G G GK+ + V + G N I + E+ S GE K +R+ +R A
Sbjct: 507 IRPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAVREIFRRA- 565
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ C +F +++D+ A G T V ++VN L ++ G+ +
Sbjct: 566 ---RQTAPCVIFFDEIDSIAPMRGFTHDSGVTERIVNQLLS---------EMDGIQSLN- 612
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCSGIFRT----DNVPKE 329
RV +I N L L+R GR ++ + P ++ RI + RT +V E
Sbjct: 613 --RVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDEKARIEILKIYTRTLPIDSSVNLE 670
Query: 330 DIVKLVDTFPGQSIDFFG------ALRARVYD 355
++ K ++ + G I+ LR + YD
Sbjct: 671 ELAKKLEGYTGADIEALARETTMKVLRQKYYD 702
>gi|238882613|gb|EEQ46251.1| ribosome biogenesis ATPase RIX7 [Candida albicans WO-1]
Length = 827
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 23/176 (13%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+ P + +WG G GK+ + V + N I + EL + GE K +RQ ++ A
Sbjct: 553 IAAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESEKAVRQVFQRA- 611
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ C +F ++LDA R T+ ++++VN L +L G+
Sbjct: 612 ---RASTPCIIFFDELDALVPRR-DTSMSESSSRVVNTLL---------TELDGL----- 653
Query: 276 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP 327
N R + V G N + ++R GR++K + PT E+R+ + + RT+N P
Sbjct: 654 NDRKGVFVIGATNRPDMIDPAMLRPGRLDKTLYIELPTPEERLEILKTLVRTNNSP 709
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 18/171 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V+ P + ++G G GK+ + ++ + I +SA + SG +GE K +R+ + EA
Sbjct: 224 VEPPRGVLLYGPPGCGKTTIANALAGELKVPFINISAPSVVSGMSGESEKKLREIFEEAK 283
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
I C +F++++DA + G Q + ++V A L+ + D T + G
Sbjct: 284 QIAP----CLIFMDEIDAITPKRDGGAQREMEKRIV-AQLLTLMDELTLEKTGGK----- 333
Query: 276 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFR 322
P++V G N +L + L R GR ++ P E RI + + +
Sbjct: 334 ----PVVVIGATNRPDSLDSALRRAGRFDREICLNVPNEEQRISILKAMTK 380
>gi|284173309|ref|ZP_06387278.1| AAA ATPase family protein [Sulfolobus solfataricus 98/2]
gi|384433872|ref|YP_005643230.1| AAA ATPase [Sulfolobus solfataricus 98/2]
gi|261602026|gb|ACX91629.1| AAA family ATPase, CDC48 subfamily [Sulfolobus solfataricus 98/2]
Length = 759
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 93/212 (43%), Gaps = 28/212 (13%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
++ P + ++G G GK+ + V + G N I + E+ S GE K +R+ +R A
Sbjct: 497 IRPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAVREIFRRA- 555
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ C +F +++D+ A G T V ++VN L ++ G+ +
Sbjct: 556 ---RQTAPCVIFFDEIDSIAPMRGFTHDSGVTERIVNQLLS---------EMDGIQSLN- 602
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCSGIFRT----DNVPKE 329
RV +I N L L+R GR ++ + P ++ RI + RT +V E
Sbjct: 603 --RVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDEKARIEILKIYTRTLPIDSSVNLE 660
Query: 330 DIVKLVDTFPGQSIDFFG------ALRARVYD 355
++ K ++ + G I+ LR + YD
Sbjct: 661 ELAKKLEGYTGADIEALARETTMKVLRQKYYD 692
>gi|328769715|gb|EGF79758.1| hypothetical protein BATDEDRAFT_89162 [Batrachochytrium
dendrobatidis JAM81]
Length = 1081
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 33/224 (14%)
Query: 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 221
L ++G G GK+ V + G+N I + EL + G K +R ++ A +
Sbjct: 772 LLLFGYPGCGKTMLASAVSKECGLNFISVKGPELLNKYIGASEKAVRDLFQRA----QSA 827
Query: 222 KMCCLFINDLDAGAGRMG----GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 277
+ CCLF ++ D+ A R G G T VN + T M+ A+ L G++
Sbjct: 828 RPCCLFFDEFDSIAPRRGHDNTGVTDRVVNQML---TQMDGAEG-----LEGVFVLAATS 879
Query: 278 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKE-DIVKL 334
R +I L+R GR++K P+R DR + I +T V I KL
Sbjct: 880 RPDLIDPA---------LLRPGRLDKTILCDLPSRLDREDIIQTISKTLAVSSSVSISKL 930
Query: 335 VDTFPGQSIDFFGA-LRARVYDDEVRKWISEVGIERIGKRLVNS 377
D Q+ F GA ++ +Y + +G E +G++L N+
Sbjct: 931 AD----QTNGFSGADIQGMMYSAHLMAIRESMGDELVGQKLENA 970
>gi|114052605|ref|NP_001040484.1| 26S proteasome regulatory ATPase subunit 10B [Bombyx mori]
gi|95103080|gb|ABF51481.1| 26S proteasome regulatory ATPase subunit 10B [Bombyx mori]
Length = 396
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 179 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 234
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 235 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKIIM 284
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + S I + + E +VKL DT
Sbjct: 285 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDT 344
Query: 338 FPGQSI 343
F G +
Sbjct: 345 FNGADL 350
>gi|325000843|ref|ZP_08121955.1| ATPase [Pseudonocardia sp. P1]
Length = 420
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 22/183 (12%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 214
V+ P + ++G G GK+F + +N + EL GE + +R+ +R A
Sbjct: 188 GVEAPRGVLLYGPPGGGKTFLLRALAGSGDLNVFAVKGAELLDKYVGESERAVRELFRRA 247
Query: 215 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 274
A + +F++++DA A R GG+T V +++V A L + D T +
Sbjct: 248 A----EAAPALIFLDEVDALAPRRGGSTDAGVADRVVAALLTEL-DGATPL--------- 293
Query: 275 ENPRVPIIVTGNDFSTLYAP-LIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKEDI 331
R ++V + L P L+R GR+E+ F P E R + R +VP D
Sbjct: 294 ---REVVVVGATNRPELIDPALLRPGRLERLVFVPPPDAEARADILRASGR--DVPLADD 348
Query: 332 VKL 334
V L
Sbjct: 349 VDL 351
>gi|148225468|ref|NP_001090469.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Xenopus
laevis]
gi|67677964|gb|AAH97594.1| MGC114813 protein [Xenopus laevis]
Length = 389
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 284 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 338 FPGQSI 343
F G +
Sbjct: 338 FNGADL 343
>gi|302772841|ref|XP_002969838.1| hypothetical protein SELMODRAFT_171164 [Selaginella moellendorffii]
gi|302806886|ref|XP_002985174.1| hypothetical protein SELMODRAFT_157152 [Selaginella moellendorffii]
gi|300147002|gb|EFJ13668.1| hypothetical protein SELMODRAFT_157152 [Selaginella moellendorffii]
gi|300162349|gb|EFJ28962.1| hypothetical protein SELMODRAFT_171164 [Selaginella moellendorffii]
Length = 398
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIVDKYIGESARLIREMFGYAR 228
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P + RI V +GI + + E
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQGRIEVLKIHSAGILKHGEIDYE 334
Query: 330 DIVKLVDTFPGQSI 343
IVKL + F G +
Sbjct: 335 AIVKLAEGFNGADL 348
>gi|146416949|ref|XP_001484444.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 418
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 98/225 (43%), Gaps = 22/225 (9%)
Query: 127 NTLDGLYIAPAFMDKVVVHITKN--FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 184
NT+ GL + +V+ KN +K+P + ++G G GK+ + V A +G
Sbjct: 162 NTIGGLTEQVRELREVIELPLKNPELFTRVGIKLPKGVLLYGPPGTGKTLLAKAVAATIG 221
Query: 185 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQY 244
N I A + GE A+LIR+ + A K+ C +F++++DA GR ++
Sbjct: 222 ANFIFSPASAIVDKYIGESARLIREMFAYA----KEHAPCIIFMDEVDAIGGRR--FSEG 275
Query: 245 TVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 304
T ++ + TLM + + G + +I+ N TL L+R GR+++
Sbjct: 276 TSADREIQRTLMELLNQMDGFDTLG--------QTKVIMATNRPDTLDPALLRAGRLDRK 327
Query: 305 YWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDTFPGQSI 343
P R+ + S + + E +VK+ D F G I
Sbjct: 328 IEIGLPNEAGRLEIFKIHTSKVSKQGEFDFEAVVKMSDGFNGADI 372
>gi|49258183|gb|AAH73644.1| Psmc6 protein, partial [Xenopus laevis]
Length = 392
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 230
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 280
Query: 284 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 281 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 340
Query: 338 FPGQSI 343
F G +
Sbjct: 341 FNGADL 346
>gi|429217576|ref|YP_007175566.1| AAA ATPase [Caldisphaera lagunensis DSM 15908]
gi|429134105|gb|AFZ71117.1| AAA family ATPase, CDC48 subfamily [Caldisphaera lagunensis DSM
15908]
Length = 734
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 16/173 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + G N I + E+ S GE + IR+ +++A ++
Sbjct: 498 LFGPPGTGKTLLAKAVATESGANFITIRGPEVLSKWVGESERAIREIFKKA----RQYAP 553
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+F +++DA A G V ++V+ L I D T++Q V +I
Sbjct: 554 VVVFFDEIDAIAALRGIDEGTRVGERIVSQLLTEI-DGITDLQ-----------NVVVIA 601
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVD 336
N + LIR GR+EK + P +++ V T NVP D V L++
Sbjct: 602 ATNRPEMVDPALIRPGRLEKLVYVPPPDEKGRVEILQIHTRNVPLADDVDLIE 654
>gi|45361531|ref|NP_989342.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Xenopus
(Silurana) tropicalis]
gi|39850228|gb|AAH64227.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Xenopus
(Silurana) tropicalis]
gi|89266829|emb|CAJ83423.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Xenopus
(Silurana) tropicalis]
Length = 389
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 284 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 338 FPGQSI 343
F G +
Sbjct: 338 FNGADL 343
>gi|28278099|gb|AAH45087.1| Psmc6 protein, partial [Xenopus laevis]
Length = 403
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 291
Query: 284 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 338 FPGQSI 343
F G +
Sbjct: 352 FNGADL 357
>gi|405122542|gb|AFR97308.1| ATPase [Cryptococcus neoformans var. grubii H99]
Length = 405
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V A + N + + + + GE A+LIR+ + A ++ +
Sbjct: 188 LYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARLIREMFAYA----REHEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR +Q T ++ + TLM + + Q+ G + R II+
Sbjct: 244 CVIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLN-----QMDGF---DSLGRTKIIM 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + + ++ ++ E IVKL D
Sbjct: 294 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAKKVNKSGDIDYEAIVKLSDG 353
Query: 338 FPGQSI 343
F G +
Sbjct: 354 FNGADL 359
>gi|390951337|ref|YP_006415096.1| AAA ATPase [Thiocystis violascens DSM 198]
gi|390427906|gb|AFL74971.1| AAA+ family ATPase [Thiocystis violascens DSM 198]
Length = 496
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 25/156 (16%)
Query: 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 219
L+LG+ GG GKS + V + G+ + + G L GE K +R R + AD++
Sbjct: 268 LLLGVQGG---GKSLAAKAVAGRFGVPLLRIDFGALYDKYIGETEKNLR-RALDTADLMA 323
Query: 220 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 279
C L+I++++ G G+ V +++ L+ +A+ T RV
Sbjct: 324 P---CVLWIDEIEKGIA--SGSEDEGVGRRILGTLLIWMAERAT--------------RV 364
Query: 280 PIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR 313
++ T ND S L LIR GR+++ ++ PT E R
Sbjct: 365 FLVATANDISRLPPELIRKGRIDELFFVDLPTAEVR 400
>gi|290976655|ref|XP_002671055.1| predicted protein [Naegleria gruberi]
gi|284084620|gb|EFC38311.1| predicted protein [Naegleria gruberi]
Length = 883
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 77/186 (41%), Gaps = 22/186 (11%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + + G N I + EL + GE + +RQ + AA
Sbjct: 591 LYGPPGCGKTLLAKAISNDSGANFISIKGPELLNKYVGESERAVRQVFSRAA----ASSP 646
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F +++DA + + + ++VN L M E V +I
Sbjct: 647 CVIFFDEMDALCPKRDNESSSQSSERVVNQLLT------------AMDGLESRGMVFVIA 694
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR----TDNVPKEDIVKLVDT 337
N + + ++R GR++K + P ++RI V I R +V E+I KL +
Sbjct: 695 ATNRPDMIDSAMLRPGRLDKLLYVKLPNEQERISVLKTIARKTPLASDVNLEEIAKLCEN 754
Query: 338 FPGQSI 343
F G +
Sbjct: 755 FSGADL 760
>gi|401623488|gb|EJS41585.1| rpt4p [Saccharomyces arboricola H-6]
Length = 437
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 320
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
II+ N TL L+R GR+++ P + R+ + S + +T E
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTSKVKKTGEFDFE 377
Query: 330 DIVKLVDTFPGQSI 343
VK+ D F G I
Sbjct: 378 AAVKMSDGFNGADI 391
>gi|242023130|ref|XP_002431989.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212517340|gb|EEB19251.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 942
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 83/189 (43%), Gaps = 19/189 (10%)
Query: 144 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 203
V K F L + P + I G G GK+ + V + GIN I + EL + GE
Sbjct: 684 VKYRKQFEQL-GLTAPAGILICGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYVGES 742
Query: 204 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 263
+ +R+ ++ A + C +F ++LD+ R T + ++VN L
Sbjct: 743 ERAVRRCFQRA----RSSAPCVIFFDELDSLCPRRSDTPESGATMRVVNQLL-------- 790
Query: 264 NVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIF 321
++ G+ +++E V I+ N + ++R GR++K + P EDR+ + +
Sbjct: 791 -TEMDGIEDRKE---VYIMAATNRPDIIDPAVLRPGRLDKILYVGLPQEEDRVDILRAVT 846
Query: 322 RTDNVPKED 330
+ PK D
Sbjct: 847 KNGTRPKLD 855
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 12/101 (11%)
Query: 141 KVVVHITKNFLNLPNVKVPLILGI--------WGGKGQGKSFQCELVFAKMGINPIMMSA 192
KV+ + K L++P+ ++ +GI G G GK+ + ++ + I +SA
Sbjct: 231 KVLEEVCKLILHIPHPEIFREIGISPPRGFLLHGPPGCGKTLLATAIAGELDVELIQISA 290
Query: 193 GELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233
EL G +GE + IR+ + A + C LFI+++DA
Sbjct: 291 PELIGGVSGESEERIRELFDRAVE----SAPCVLFIDEVDA 327
>gi|195160265|ref|XP_002020996.1| GL25072 [Drosophila persimilis]
gi|198464587|ref|XP_001353280.2| GA20215 [Drosophila pseudoobscura pseudoobscura]
gi|194118109|gb|EDW40152.1| GL25072 [Drosophila persimilis]
gi|198149786|gb|EAL30783.2| GA20215 [Drosophila pseudoobscura pseudoobscura]
Length = 389
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + ++M N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLMARAIASQMDANFLKVVSSAIVDKYIGESARLIREMFSYARD----HQP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ + ++ + TLM + + Q+ G + +V +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGSSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 277
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSGIFRTDNVPK-EDIVKLVDT 337
N TL L+R GR+++ P R D + + +G V E IVKL DT
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKLEIPLPNEVARMDILKIHAGPLSKQGVIDYEAIVKLSDT 337
Query: 338 FPGQSI 343
F G +
Sbjct: 338 FNGADL 343
>gi|168003543|ref|XP_001754472.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella
patens subsp. patens]
gi|162694574|gb|EDQ80922.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella
patens subsp. patens]
Length = 392
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 163 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIVDKYIGESARLIREMFSYAR 222
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 223 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 268
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P +R + + + SGI + + E
Sbjct: 269 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRTEILKIHASGITKHGEIDYE 328
Query: 330 DIVKLVDTFPGQSI 343
IVKL + F G +
Sbjct: 329 AIVKLAEGFNGADL 342
>gi|403215874|emb|CCK70372.1| hypothetical protein KNAG_0E01040 [Kazachstania naganishii CBS
8797]
Length = 785
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 28/200 (14%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+ P + +WG G GK+ + V + N I + EL + GE + IRQ + A
Sbjct: 514 INAPAGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFTRAR 573
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
I C +F ++LDA R T+ ++++VN L +L G+
Sbjct: 574 ASIP----CVIFFDELDALVPRR-DTSLSESSSRVVNTLL---------TELDGL----- 614
Query: 276 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKE-- 329
N R I V G N + ++R GR++K F PT+E+++ + + R++ P
Sbjct: 615 NDRRGIFVIGATNRPDMIDPAMLRPGRLDKTIFIELPTKEEKLDILQTLLRSNGTPVAHD 674
Query: 330 -DIVKLVDTFPGQSIDFFGA 348
D ++++ F Q +F GA
Sbjct: 675 IDFAEIINDFRCQ--NFSGA 692
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 81/190 (42%), Gaps = 23/190 (12%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+ G G GK+ + ++ + I +SA + SG +GE K IR + EA I
Sbjct: 211 LHGPPGCGKTSIANALAGELKVPFISVSAPSVVSGMSGESEKKIRDLFEEAQQIAP---- 266
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F +++DA + G Q + ++V A L+ D T + G P+IV
Sbjct: 267 CLIFFDEIDAITPKRDGGAQREMEKRIV-AQLLTSMDELTLQKTGGK---------PVIV 316
Query: 284 TG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTDNVPKE-DIVKLVDTF 338
G N +L A L R GR ++ P R+ + + T + E D ++L
Sbjct: 317 IGATNRPDSLDAALRRAGRFDREICLNVPNEVSRLHILKKLSSTLKLDGEIDFLQLAKLT 376
Query: 339 PGQSIDFFGA 348
PG F GA
Sbjct: 377 PG----FVGA 382
>gi|449664501|ref|XP_002169843.2| PREDICTED: nuclear valosin-containing protein-like [Hydra
magnipapillata]
Length = 400
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 82/187 (43%), Gaps = 19/187 (10%)
Query: 144 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 203
VH F +L V P IL + G G GK+ + + + GIN I + EL + GE
Sbjct: 101 VHNPVEFESLGLVTPPGIL-LAGPPGCGKTLLAKAIANEAGINFISVKGPELLNMYVGES 159
Query: 204 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 263
K +RQ ++ A K C +F +++DA R T + ++++VN L
Sbjct: 160 EKAVRQVFQRA----KNSAPCVIFFDEIDALCPRRSETGDSSASSRVVNQLL-------- 207
Query: 264 NVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIF 321
++ G+ E V I+ N L A ++R GR++K + P DR + + I
Sbjct: 208 -TEMDGL---ETRKNVFIMGATNRPDILDAAILRPGRLDKLLYVGLPNPSDRKKILNTIT 263
Query: 322 RTDNVPK 328
PK
Sbjct: 264 MNGTKPK 270
>gi|168017225|ref|XP_001761148.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella
patens subsp. patens]
gi|162687488|gb|EDQ73870.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella
patens subsp. patens]
Length = 392
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 163 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIVDKYIGESARLIREMFSYAR 222
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 223 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 268
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P +R + + + SGI + + E
Sbjct: 269 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRTEILKIHASGITKHGEIDYE 328
Query: 330 DIVKLVDTFPGQSI 343
IVKL + F G +
Sbjct: 329 AIVKLAEGFNGADL 342
>gi|321263320|ref|XP_003196378.1| 6S protease subunit rpt4 [Cryptococcus gattii WM276]
gi|317462854|gb|ADV24591.1| 6S protease subunit rpt4, putative [Cryptococcus gattii WM276]
Length = 405
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V A + N + + + + GE A+LIR+ + A ++ +
Sbjct: 188 LYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARLIREMFAYA----REHEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR +Q T ++ + TLM + + Q+ G + R II+
Sbjct: 244 CVIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLN-----QMDGF---DSLGRTKIIM 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + + ++ ++ E IVKL D
Sbjct: 294 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAKKVNKSGDIDYEAIVKLSDG 353
Query: 338 FPGQSI 343
F G +
Sbjct: 354 FNGADL 359
>gi|330802418|ref|XP_003289214.1| hypothetical protein DICPUDRAFT_16006 [Dictyostelium purpureum]
gi|325080701|gb|EGC34245.1| hypothetical protein DICPUDRAFT_16006 [Dictyostelium purpureum]
Length = 732
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 72/161 (44%), Gaps = 14/161 (8%)
Query: 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 221
L +WG G GKS + + M IN I + ++ S GE ++IR+ ++ A +
Sbjct: 519 LLLWGPSGCGKSLMVKAIATSMSINFISIKGSDIYSKWLGESERIIRELFKSA----RLS 574
Query: 222 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 281
C +F +++D+ A G + + + L + + +Q+ ++ +
Sbjct: 575 SPCIMFFDEIDSLALSRGDSNDSSEDGGTGKRILSQLLNEMDGIQVKS--------QIFL 626
Query: 282 IVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGI 320
I N ++ + L+R GR+E PT EDRI + + I
Sbjct: 627 IGCTNTIDSIDSALLRPGRLETLIKVDLPTLEDRIDILNVI 667
>gi|57529874|ref|NP_001006494.1| 26S protease regulatory subunit S10B [Gallus gallus]
gi|53130584|emb|CAG31621.1| hypothetical protein RCJMB04_8n6 [Gallus gallus]
Length = 389
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 338 FPGQSI 343
F G +
Sbjct: 338 FNGADL 343
>gi|81294202|gb|AAI07951.1| Psmc6 protein [Rattus norvegicus]
Length = 381
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 164 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 219
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 220 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 269
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 270 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 329
Query: 338 FPGQSI 343
F G +
Sbjct: 330 FNGADL 335
>gi|27754103|ref|NP_080235.2| 26S protease regulatory subunit 10B [Mus musculus]
gi|354497334|ref|XP_003510776.1| PREDICTED: 26S protease regulatory subunit 10B [Cricetulus griseus]
gi|51702772|sp|P62333.1|PRS10_HUMAN RecName: Full=26S protease regulatory subunit 10B; AltName:
Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
Full=Proteasome 26S subunit ATPase 6; AltName:
Full=Proteasome subunit p42
gi|55977306|sp|P62334.1|PRS10_MOUSE RecName: Full=26S protease regulatory subunit 10B; AltName:
Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
Full=Proteasome 26S subunit ATPase 6; AltName:
Full=Proteasome subunit p42
gi|59800155|sp|P62335.1|PRS10_SPETR RecName: Full=26S protease regulatory subunit 10B; AltName:
Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
Full=Conserved ATPase domain protein 44; Short=CADp44;
AltName: Full=Proteasome 26S subunit ATPase 6; AltName:
Full=Proteasome subunit p42
gi|1045497|gb|AAB40354.1| conserved ATPase domain protein 44 [Spermophilus tridecemlineatus]
gi|2213932|gb|AAB61616.1| 26S proteasome regulatory subunit [Homo sapiens]
gi|12848757|dbj|BAB28078.1| unnamed protein product [Mus musculus]
gi|13529266|gb|AAH05390.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Homo
sapiens]
gi|30582525|gb|AAP35489.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Homo
sapiens]
gi|48145535|emb|CAG32990.1| PSMC6 [Homo sapiens]
gi|61361236|gb|AAX42017.1| proteasome 26S subunit 6 [synthetic construct]
gi|61361244|gb|AAX42018.1| proteasome 26S subunit 6 [synthetic construct]
gi|74185083|dbj|BAE39144.1| unnamed protein product [Mus musculus]
gi|74194908|dbj|BAE26034.1| unnamed protein product [Mus musculus]
gi|109733764|gb|AAI16753.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Mus
musculus]
gi|111601154|gb|AAI19169.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Mus
musculus]
gi|119586049|gb|EAW65645.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Homo
sapiens]
gi|123994057|gb|ABM84630.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [synthetic
construct]
gi|148688745|gb|EDL20692.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6, isoform
CRA_b [Mus musculus]
gi|189053915|dbj|BAG36422.1| unnamed protein product [Homo sapiens]
gi|208967156|dbj|BAG73592.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [synthetic
construct]
gi|296483635|tpg|DAA25750.1| TPA: 26S protease regulatory subunit S10B [Bos taurus]
gi|335775939|gb|AEH58739.1| 26S protease regulatory subunit S10B-like protein [Equus caballus]
Length = 389
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 338 FPGQSI 343
F G +
Sbjct: 338 FNGADL 343
>gi|345795599|ref|XP_003434055.1| PREDICTED: 26S protease regulatory subunit 10B-like [Canis lupus
familiaris]
Length = 418
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 201 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 256
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 257 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 306
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 307 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 366
Query: 338 FPGQSI 343
F G +
Sbjct: 367 FNGADL 372
>gi|168029577|ref|XP_001767302.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella
patens subsp. patens]
gi|162681557|gb|EDQ67983.1| 26S proteasome regulatory complex, ATPase RPT4 [Physcomitrella
patens subsp. patens]
Length = 392
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 163 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIVDKYIGESARLIREMFSYAR 222
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 223 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 268
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P +R + + + SGI + + E
Sbjct: 269 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRTEILKIHASGITKHGEIDYE 328
Query: 330 DIVKLVDTFPGQSI 343
IVKL + F G +
Sbjct: 329 AIVKLAEGFNGADL 342
>gi|34783985|gb|AAH57997.1| Psmc6 protein, partial [Mus musculus]
Length = 382
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 165 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 220
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 221 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 270
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 271 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 330
Query: 338 FPGQSI 343
F G +
Sbjct: 331 FNGADL 336
>gi|400597658|gb|EJP65388.1| ATPase protein [Beauveria bassiana ARSEF 2860]
Length = 733
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 18/169 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+WG G GK+ + V + + I+++ EL + GE + +R+ + A +
Sbjct: 498 LWGPPGCGKTLVAQAVANEAQASFILINGPELLNKYVGESERAVRELFSRA----RSSTP 553
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C LF ++ D+ A R G ++VNA L +L G ++ V +I
Sbjct: 554 CILFFDEFDSIAPRRDGGGASEAGTRVVNALL---------TELDGARGRDG---VYVIG 601
Query: 284 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKED 330
T N + ++R GR+ K F PT +R+ + I+RT +V D
Sbjct: 602 TTNRPDMIDDAMLRPGRLSKQLFLDLPTAAERVDILLAIYRTRHVGATD 650
>gi|395838570|ref|XP_003792186.1| PREDICTED: 26S protease regulatory subunit 10B [Otolemur garnettii]
Length = 403
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 291
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 338 FPGQSI 343
F G +
Sbjct: 352 FNGADL 357
>gi|149622137|ref|XP_001521658.1| PREDICTED: 26S protease regulatory subunit 10B-like, partial
[Ornithorhynchus anatinus]
Length = 400
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 183 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 238
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 239 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 288
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 289 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 348
Query: 338 FPGQSI 343
F G +
Sbjct: 349 FNGADL 354
>gi|357123904|ref|XP_003563647.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
[Brachypodium distachyon]
Length = 400
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 171 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREIFNYA- 229
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 230 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 276
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P + R+ V SGI + + E
Sbjct: 277 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHASGIAKHGEIDYE 336
Query: 330 DIVKLVDTFPGQSI 343
+VKL + F G +
Sbjct: 337 AVVKLAEGFNGADL 350
>gi|68470308|ref|XP_720658.1| hypothetical protein CaO19.11695 [Candida albicans SC5314]
gi|68470569|ref|XP_720530.1| hypothetical protein CaO19.4219 [Candida albicans SC5314]
gi|40362746|gb|AAR84642.1| AAA ATPase [Candida albicans]
gi|46442402|gb|EAL01691.1| hypothetical protein CaO19.4219 [Candida albicans SC5314]
gi|46442537|gb|EAL01825.1| hypothetical protein CaO19.11695 [Candida albicans SC5314]
Length = 827
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 23/176 (13%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+ P + +WG G GK+ + V + N I + EL + GE K +RQ ++ A
Sbjct: 553 IAAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESEKAVRQVFQRA- 611
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ C +F ++LDA R T+ ++++VN L +L G+
Sbjct: 612 ---RASTPCIIFFDELDALVPRR-DTSMSESSSRVVNTLL---------TELDGL----- 653
Query: 276 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP 327
N R + V G N + ++R GR++K + PT E+R+ + + RT N P
Sbjct: 654 NDRKGVFVIGATNRPDMIDPAMLRPGRLDKTLYIELPTPEERLEILKTLVRTSNSP 709
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 79/171 (46%), Gaps = 18/171 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V+ P + ++G G GK+ + ++ + I +SA + SG +GE K +R+ + EA
Sbjct: 224 VEPPRGVLLYGPPGCGKTTIANALAGELKVPFINISAPSVVSGMSGESEKKLREIFEEAK 283
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
I C +F++++DA + G Q + ++V A L+ + D T + G
Sbjct: 284 QIAP----CLIFMDEIDAITPKRDGGAQREMEKRIV-AQLLTLMDELTLEKTGGK----- 333
Query: 276 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFR 322
P++V G N +L + L R GR ++ P E RI + + +
Sbjct: 334 ----PVVVIGATNRPDSLDSALRRAGRFDREICLNVPNEEQRISILKAMTK 380
>gi|15239140|ref|NP_199115.1| regulatory particle triple-A ATPase 4A [Arabidopsis thaliana]
gi|75337115|sp|Q9SEI3.1|PS10A_ARATH RecName: Full=26S protease regulatory subunit 10B homolog A;
AltName: Full=26S proteasome AAA-ATPase subunit RPT4a;
AltName: Full=26S proteasome subunit 10B homolog A;
AltName: Full=Regulatory particle triple-A ATPase
subunit 4a
gi|6652884|gb|AAF22524.1|AF123393_1 26S proteasome AAA-ATPase subunit RPT4a [Arabidopsis thaliana]
gi|13937183|gb|AAK50085.1|AF372945_1 AT5g43010/MBD2_21 [Arabidopsis thaliana]
gi|9758590|dbj|BAB09203.1| 26S proteasome AAA-ATPase subunit RPT4a [Arabidopsis thaliana]
gi|18700262|gb|AAL77741.1| AT5g43010/MBD2_21 [Arabidopsis thaliana]
gi|332007517|gb|AED94900.1| regulatory particle triple-A ATPase 4A [Arabidopsis thaliana]
Length = 399
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 228
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ + C +F++++DA GR ++ T ++ + TLM + + QL G N
Sbjct: 229 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGFDNL-- 276
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P +R D + + +GI + + E
Sbjct: 277 -GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYE 335
Query: 330 DIVKLVDTFPGQSI 343
IVKL + F G +
Sbjct: 336 AIVKLAEGFNGADL 349
>gi|213972598|ref|NP_001093979.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Rattus
norvegicus]
gi|149033503|gb|EDL88301.1| rCG61291 [Rattus norvegicus]
Length = 403
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 291
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 338 FPGQSI 343
F G +
Sbjct: 352 FNGADL 357
>gi|334310858|ref|XP_001365047.2| PREDICTED: 26S protease regulatory subunit 10B-like [Monodelphis
domestica]
Length = 403
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 291
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 338 FPGQSI 343
F G +
Sbjct: 352 FNGADL 357
>gi|410074777|ref|XP_003954971.1| hypothetical protein KAFR_0A04010 [Kazachstania africana CBS 2517]
gi|372461553|emb|CCF55836.1| hypothetical protein KAFR_0A04010 [Kazachstania africana CBS 2517]
Length = 424
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 199 IKPPKGVLLYGPPGTGKTLLAKAVSATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 257
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 258 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 307
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK------E 329
II+ N TL L+R GR+++ P + + T NV K E
Sbjct: 308 ---TKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEAGRLEIFKIHTANVKKVGEFDFE 364
Query: 330 DIVKLVDTFPGQSI 343
VK+ D F G I
Sbjct: 365 AAVKMSDGFNGADI 378
>gi|114053003|ref|NP_001039705.1| 26S protease regulatory subunit 10B [Bos taurus]
gi|119390895|sp|Q2KIW6.1|PRS10_BOVIN RecName: Full=26S protease regulatory subunit 10B; AltName:
Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
Full=Proteasome 26S subunit ATPase 6
gi|86827363|gb|AAI12483.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Bos taurus]
Length = 389
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 338 FPGQSI 343
F G +
Sbjct: 338 FNGADL 343
>gi|335280279|ref|XP_001928782.2| PREDICTED: 26S protease regulatory subunit 10B [Sus scrofa]
Length = 403
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 291
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 338 FPGQSI 343
F G +
Sbjct: 352 FNGADL 357
>gi|30583901|gb|AAP36199.1| Homo sapiens proteasome (prosome, macropain) 26S subunit, ATPase, 6
[synthetic construct]
gi|60653563|gb|AAX29475.1| proteasome 26S subunit 6 [synthetic construct]
Length = 390
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 338 FPGQSI 343
F G +
Sbjct: 338 FNGADL 343
>gi|254584302|ref|XP_002497719.1| ZYRO0F11946p [Zygosaccharomyces rouxii]
gi|238940612|emb|CAR28786.1| ZYRO0F11946p [Zygosaccharomyces rouxii]
Length = 444
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 219 IKSPTGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 277
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + L M +
Sbjct: 278 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMEL--------LTQMDGFDS 324
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK------E 329
+ II+ N TL L+R GR+++ P + + T NV K E
Sbjct: 325 LGQTKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEAGRLEVFKIHTTNVKKAGEFDFE 384
Query: 330 DIVKLVDTFPGQSI 343
VK+ D F G I
Sbjct: 385 AAVKMSDGFNGADI 398
>gi|449278480|gb|EMC86302.1| 26S protease regulatory subunit S10B, partial [Columba livia]
Length = 361
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 144 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 199
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 200 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 249
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 250 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 309
Query: 338 FPGQSI 343
F G +
Sbjct: 310 FNGADL 315
>gi|195539395|ref|NP_002797.3| 26S protease regulatory subunit 10B [Homo sapiens]
gi|73963837|ref|XP_535701.2| PREDICTED: 26S protease regulatory subunit 10B [Canis lupus
familiaris]
gi|114653051|ref|XP_001159476.1| PREDICTED: 26S protease regulatory subunit 10B isoform 2 [Pan
troglodytes]
gi|291403875|ref|XP_002718294.1| PREDICTED: proteasome 26S ATPase subunit 6 [Oryctolagus cuniculus]
gi|296215034|ref|XP_002753956.1| PREDICTED: 26S protease regulatory subunit 10B [Callithrix jacchus]
gi|297695107|ref|XP_002824794.1| PREDICTED: 26S protease regulatory subunit 10B [Pongo abelii]
gi|332237110|ref|XP_003267746.1| PREDICTED: 26S protease regulatory subunit 10B [Nomascus
leucogenys]
gi|344273723|ref|XP_003408668.1| PREDICTED: 26S protease regulatory subunit 10B-like [Loxodonta
africana]
gi|348572189|ref|XP_003471876.1| PREDICTED: 26S protease regulatory subunit 10B-like [Cavia
porcellus]
gi|397523475|ref|XP_003831757.1| PREDICTED: 26S protease regulatory subunit 10B [Pan paniscus]
gi|410962256|ref|XP_003987690.1| PREDICTED: 26S protease regulatory subunit 10B [Felis catus]
gi|426232518|ref|XP_004010269.1| PREDICTED: 26S protease regulatory subunit 10B [Ovis aries]
gi|426376918|ref|XP_004055227.1| PREDICTED: 26S protease regulatory subunit 10B-like [Gorilla
gorilla gorilla]
gi|351707287|gb|EHB10206.1| 26S protease regulatory subunit S10B [Heterocephalus glaber]
gi|380814880|gb|AFE79314.1| 26S protease regulatory subunit 10B [Macaca mulatta]
gi|410216102|gb|JAA05270.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Pan
troglodytes]
gi|410290648|gb|JAA23924.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Pan
troglodytes]
gi|417400316|gb|JAA47112.1| Putative 26s protease regulatory subunit s10b-like protein
[Desmodus rotundus]
gi|431895846|gb|ELK05264.1| 26S protease regulatory subunit S10B [Pteropus alecto]
Length = 403
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 291
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 338 FPGQSI 343
F G +
Sbjct: 352 FNGADL 357
>gi|355714057|gb|AES04878.1| proteasome 26S ATPase subunit 6 [Mustela putorius furo]
Length = 370
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 153 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 208
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 209 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 258
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 259 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 318
Query: 338 FPGQSI 343
F G +
Sbjct: 319 FNGADL 324
>gi|367000972|ref|XP_003685221.1| hypothetical protein TPHA_0D01470 [Tetrapisispora phaffii CBS 4417]
gi|357523519|emb|CCE62787.1| hypothetical protein TPHA_0D01470 [Tetrapisispora phaffii CBS 4417]
Length = 455
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 230 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAK 289
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 290 D----HEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFENLGQ 338
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK------E 329
II+ N TL L+R GR+++ P + + T+ V K E
Sbjct: 339 ---TKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEAGRLEIFKIHTEKVKKIGEFDFE 395
Query: 330 DIVKLVDTFPGQSI 343
VK+ D F G I
Sbjct: 396 AAVKMSDGFNGADI 409
>gi|392589988|gb|EIW79318.1| 26S proteasome regulatory complex ATPase RPT4 [Coniophora puteana
RWD-64-598 SS2]
Length = 394
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V A + N + + + + GE A+++R+ + A
Sbjct: 175 IKPPKGVLLYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARVVREMFGYAK 234
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 235 D----HEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 282
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP--TREDRIGV----CSGIFRTDNVPKE 329
+ +I+ N TL L+R GR+++ P + R+ + + + + + E
Sbjct: 283 --KTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAQPVNKAEGIDYE 340
Query: 330 DIVKLVDTFPGQSI 343
IVKL DTF G +
Sbjct: 341 AIVKLTDTFNGADL 354
>gi|158295544|ref|XP_316268.4| AGAP006205-PA [Anopheles gambiae str. PEST]
gi|157016089|gb|EAA10786.4| AGAP006205-PA [Anopheles gambiae str. PEST]
Length = 1020
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 88/209 (42%), Gaps = 27/209 (12%)
Query: 151 LNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 210
L L + P + + G G GK+ + V + GIN I + EL + GE + +RQ
Sbjct: 758 LKLLGLTAPSGVLLCGPPGCGKTLLAKAVANEAGINFISVKGPELLNMYVGESERAVRQC 817
Query: 211 YREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM 270
++ A + C +F ++ D+ + T + + ++VN L M
Sbjct: 818 FQRA----RNSAPCVIFFDEFDSLCPKRSDTAEGSAGTRVVNQLLTE------------M 861
Query: 271 YNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR------ 322
EE V ++ N + ++R GR++K + P +EDR+ + + +
Sbjct: 862 DGIEERKGVFLMAATNRPDIVDPAVLRPGRLDKILYVGLPAKEDRVDILRALTKNRTQPR 921
Query: 323 -TDNVPKEDIVKLVDTFPGQSIDFFGALR 350
D+V E + +L + + G D G +R
Sbjct: 922 LADDVELEKVAELTEGYTG--ADLAGLVR 948
Score = 41.6 bits (96), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 53/103 (51%), Gaps = 12/103 (11%)
Query: 139 MDKVVVHITKNFLNLPNVKVPLILGI--------WGGKGQGKSFQCELVFAKMGINPIMM 190
MD ++ ++ + L++ + ++ LG+ G G GK+ + + ++ + I +
Sbjct: 311 MDHILKNLCELLLHVIHPEIYRYLGLPPPRGFLLHGPPGSGKTLLAQAIAGQLNVRLIEV 370
Query: 191 SAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233
A EL +G +GE + IR + +AA + C LFI+++DA
Sbjct: 371 PATELVAGVSGESEERIRDVFEQAASL----SPCVLFIDEIDA 409
>gi|50305331|ref|XP_452625.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641758|emb|CAH01476.1| KLLA0C09592p [Kluyveromyces lactis]
Length = 434
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 24/196 (12%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 209 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 267
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 268 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 317
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPK----- 328
+I+ N TL L+R GR+++ P R+ + T NV K
Sbjct: 318 ---TKVIMATNRPDTLDPALLRPGRLDRKIEISLPNEAGRLEIFK--IHTSNVKKAGEFD 372
Query: 329 -EDIVKLVDTFPGQSI 343
E VK+ D F G I
Sbjct: 373 FEAAVKMSDGFNGADI 388
>gi|225021604|ref|ZP_03710796.1| hypothetical protein CORMATOL_01626 [Corynebacterium matruchotii
ATCC 33806]
gi|305680771|ref|ZP_07403578.1| ATPase, AAA family [Corynebacterium matruchotii ATCC 14266]
gi|224945595|gb|EEG26804.1| hypothetical protein CORMATOL_01626 [Corynebacterium matruchotii
ATCC 33806]
gi|305658976|gb|EFM48476.1| ATPase, AAA family [Corynebacterium matruchotii ATCC 14266]
Length = 516
Score = 51.6 bits (122), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 81/195 (41%), Gaps = 44/195 (22%)
Query: 166 GGKGQGKSF-------QCELVFAKMGINPIM-MSAGELESGNAGEPAKLIRQRYREAADI 217
G G GKS Q EL ++ + I+ M GE E Q REA +
Sbjct: 273 GVPGCGKSLSAKNIAVQWELPLYRLDMGAILGMYVGESE------------QNLREALET 320
Query: 218 IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 277
++ C L+I++++ G G+ +V +++ L + QE
Sbjct: 321 AERMAPCVLWIDEIEKGLAT--GSGDSSVTKRLIGQFLF--------------WLQESQA 364
Query: 278 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT---REDRIGVCSGIFRTDNVPKEDIV 332
+V I+ T ND STL L+R GR ++ ++ PT R D I +C + +P +
Sbjct: 365 KVFIVATANDVSTLPPELLRKGRFDEIFFVDLPTETERTDIIDLCFWKYTNHAIPSHLVA 424
Query: 333 KLVDT---FPGQSID 344
+L + F G ID
Sbjct: 425 ELAEVSEGFAGSDID 439
>gi|19263883|gb|AAH25134.1| Psmc6 protein, partial [Mus musculus]
Length = 293
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 76 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 131
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 132 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 181
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 182 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 241
Query: 338 FPGQSI 343
F G +
Sbjct: 242 FNGADL 247
>gi|17298147|dbj|BAB78495.1| 26S proteasome regulatory particle triple-A ATPase subunit4b [Oryza
sativa Japonica Group]
Length = 377
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 97/202 (48%), Gaps = 21/202 (10%)
Query: 148 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 207
K FL + +K P + ++G G GK+ + + + N + + + + GE A+LI
Sbjct: 141 KLFLRV-GIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLI 199
Query: 208 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 267
R+ + A ++ + C +F++++DA GR ++ T ++ + TLM + + QL
Sbjct: 200 REMFSYA----REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QL 248
Query: 268 PGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIF 321
G +E +V +I+ N L L+R GR+++ P + R+ V +GI
Sbjct: 249 DGF---DELGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHAAGIA 305
Query: 322 RTDNVPKEDIVKLVDTFPGQSI 343
+ + E +VKL + F G +
Sbjct: 306 KHGEIDYEAVVKLAEGFNGADL 327
>gi|326921318|ref|XP_003206908.1| PREDICTED: 26S protease regulatory subunit 10B-like [Meleagris
gallopavo]
Length = 372
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 155 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 210
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 211 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 260
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 261 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 320
Query: 338 FPGQSI 343
F G +
Sbjct: 321 FNGADL 326
>gi|12852148|dbj|BAB29293.1| unnamed protein product [Mus musculus]
Length = 389
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + + ++ +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMF----NYVRDHQP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNSPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 338 FPGQSI 343
F G +
Sbjct: 338 FNGADL 343
>gi|448725635|ref|ZP_21708082.1| proteasome-activating nucleotidase [Halococcus morrhuae DSM 1307]
gi|445797859|gb|EMA48297.1| proteasome-activating nucleotidase [Halococcus morrhuae DSM 1307]
Length = 405
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 85/195 (43%), Gaps = 20/195 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
++ P + + G G GK+ + V + I M+ EL GE A+L+R +
Sbjct: 182 IEPPTGVLLHGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGARLVRDLF---- 237
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ + + +FI+++DA A + T T + V T+M + L M EE
Sbjct: 238 ELASEHEPAVIFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFEE 287
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCS-GIFRTDNVPKE 329
+ II N F L ++R GR ++ P RE + + G+ D+V +
Sbjct: 288 RGDISIIAATNRFDMLDRAILRPGRFDRLIEVPKPGPDGREKIFAIHTRGMNLDDDVAFD 347
Query: 330 DIVKLVDTFPGQSID 344
++ ++ D F G I+
Sbjct: 348 ELAEMADEFSGAEIE 362
>gi|15920578|ref|NP_376247.1| hypothetical protein ST0376 [Sulfolobus tokodaii str. 7]
gi|342306167|dbj|BAK54256.1| ATPase [Sulfolobus tokodaii str. 7]
Length = 747
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 84/201 (41%), Gaps = 21/201 (10%)
Query: 150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 209
N + P + ++G G GK+ + V + G N I + E+ S GE K IR+
Sbjct: 479 LFNKSGITPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIRE 538
Query: 210 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI-ADNPTNVQLP 268
+R+A ++ +F +++DA A G TT V ++VN L + P N
Sbjct: 539 IFRKA----RQAAPTIIFFDEIDAIAPMRGLTTDSGVTERIVNQLLAEMDGIVPLN---- 590
Query: 269 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP- 327
+V +I N L L+R GR ++ + P + R T NVP
Sbjct: 591 ---------KVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDKRARAEILKVHTRNVPL 641
Query: 328 KEDIVKLVDTFPGQSIDFFGA 348
EDI +D ++ + GA
Sbjct: 642 AEDIT--LDELAEKTEGYTGA 660
>gi|115468870|ref|NP_001058034.1| Os06g0607800 [Oryza sativa Japonica Group]
gi|51090352|dbj|BAD35613.1| putative 26S proteasome regulatory particle triple-A ATPase
subunit4 [Oryza sativa Japonica Group]
gi|51091388|dbj|BAD36121.1| putative 26S proteasome regulatory particle triple-A ATPase
subunit4 [Oryza sativa Japonica Group]
gi|113596074|dbj|BAF19948.1| Os06g0607800 [Oryza sativa Japonica Group]
gi|125597814|gb|EAZ37594.1| hypothetical protein OsJ_21925 [Oryza sativa Japonica Group]
gi|215693190|dbj|BAG88572.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215694896|dbj|BAG90087.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 401
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 97/202 (48%), Gaps = 21/202 (10%)
Query: 148 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 207
K FL + +K P + ++G G GK+ + + + N + + + + GE A+LI
Sbjct: 165 KLFLRV-GIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLI 223
Query: 208 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 267
R+ + A ++ + C +F++++DA GR ++ T ++ + TLM + + QL
Sbjct: 224 REMFSYA----REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QL 272
Query: 268 PGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIF 321
G +E +V +I+ N L L+R GR+++ P + R+ V +GI
Sbjct: 273 DGF---DELGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHAAGIA 329
Query: 322 RTDNVPKEDIVKLVDTFPGQSI 343
+ + E +VKL + F G +
Sbjct: 330 KHGEIDYEAVVKLAEGFNGADL 351
>gi|164663143|ref|XP_001732693.1| hypothetical protein MGL_0468 [Malassezia globosa CBS 7966]
gi|159106596|gb|EDP45479.1| hypothetical protein MGL_0468 [Malassezia globosa CBS 7966]
Length = 382
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V A + N + + A + GE A+L+R+ + A
Sbjct: 157 IKSPKGVLLYGPPGTGKTLLARAVAATLDTNFLKVVASAIVDKYIGESARLVREMFAYA- 215
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K + C +F++++DA GR ++ T ++ + TLM + + Q+ G ++
Sbjct: 216 ---KTKEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DQ 262
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKE 329
+ +I+ N TL L+R GR+++ P + R+ + I + D + E
Sbjct: 263 LGKTKVIMATNRPDTLDPALLRPGRIDRKIEIPLPNEQSRLEILKIHTRPIAKRDELDYE 322
Query: 330 DIVKLVDTFPGQSI 343
IVKL D F G +
Sbjct: 323 AIVKLSDGFNGADL 336
>gi|402876178|ref|XP_003901853.1| PREDICTED: 26S protease regulatory subunit 10B [Papio anubis]
Length = 378
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 161 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 216
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 217 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 266
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 267 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 326
Query: 338 FPGQSI 343
F G +
Sbjct: 327 FNGADL 332
>gi|302687350|ref|XP_003033355.1| hypothetical protein SCHCODRAFT_76066 [Schizophyllum commune H4-8]
gi|300107049|gb|EFI98452.1| hypothetical protein SCHCODRAFT_76066 [Schizophyllum commune H4-8]
Length = 388
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 94/194 (48%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V A + N + + + + GE A+++R+ + A
Sbjct: 164 IKPPKGVLLYGPPGTGKTLLARAVAATLSTNFLKVVSSAIVDKYIGESARVVREMFGYA- 222
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 223 ---REHEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 269
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
R +I+ N TL L+R GR+++ P + R+ + + + + +++ E
Sbjct: 270 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEVPLPNEQARLEILKIHAAPVNKAEDIDYE 329
Query: 330 DIVKLVDTFPGQSI 343
IVKL D+F G +
Sbjct: 330 AIVKLSDSFNGADL 343
>gi|451848921|gb|EMD62226.1| hypothetical protein COCSADRAFT_39001 [Cochliobolus sativus ND90Pr]
gi|451998748|gb|EMD91212.1| hypothetical protein COCHEDRAFT_1137748 [Cochliobolus
heterostrophus C5]
Length = 393
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRTD-NVPKE 329
+ II+ N TL L+R GR+++ P R + + + SG TD + E
Sbjct: 276 --QTKIIMATNRPDTLDPALLRAGRLDRKLEIPLPNEVGRLEILKIHSGSVVTDGEIDFE 333
Query: 330 DIVKLVDTFPGQSI 343
IVK+ D F G +
Sbjct: 334 SIVKMSDGFNGADL 347
>gi|255727949|ref|XP_002548900.1| ribosome biogenesis ATPase RIX7 [Candida tropicalis MYA-3404]
gi|240133216|gb|EER32772.1| ribosome biogenesis ATPase RIX7 [Candida tropicalis MYA-3404]
Length = 825
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 23/184 (12%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+ P + +WG G GK+ + V + N I + EL + GE + +RQ ++ A
Sbjct: 553 IAAPAGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAVRQVFQRA- 611
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ C +F ++LDA R + + ++++VN L +L G+
Sbjct: 612 ---RASTPCIIFFDELDALVPRRDNSMSES-SSRVVNTLL---------TELDGL----- 653
Query: 276 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDI 331
N R + V G N + ++R GR++K + P+ E+R+ + I R++N P
Sbjct: 654 NDRKGVFVIGATNRPDMIDPAMLRPGRLDKTLYIELPSPEERLEILKTIVRSNNSPLHSD 713
Query: 332 VKLV 335
V LV
Sbjct: 714 VSLV 717
Score = 45.4 bits (106), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 18/171 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V+ P + ++G G GK+ + ++ + +SA + SG +GE K +R + EA
Sbjct: 224 VEPPRGVLLYGPPGCGKTTLANALAGELKVPFFNISAPSIVSGMSGESEKKLRDLFEEAK 283
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ C +F++++DA + G Q + ++V A L+ + D T + G
Sbjct: 284 SVAP----CLIFMDEIDAITPKRDGGAQREMERRIV-AQLLTLMDELTLEKTGGK----- 333
Query: 276 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFR 322
P++V G N +L + L R GR ++ P E RI + + +
Sbjct: 334 ----PVVVIGATNRPDSLDSALRRAGRFDREICLTVPNEEQRISILKAMTK 380
>gi|448310565|ref|ZP_21500381.1| proteasome-activating nucleotidase [Natronolimnobius
innermongolicus JCM 12255]
gi|445607712|gb|ELY61588.1| proteasome-activating nucleotidase [Natronolimnobius
innermongolicus JCM 12255]
Length = 405
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R + D+ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETNATFIKMAGSELVHKFIGEGAKLVRDLF----DVAREHEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|384248894|gb|EIE22377.1| 26S proteasome regulatory subunit [Coccomyxa subellipsoidea C-169]
Length = 398
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLSQLDGFDVIG------ 273
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P R + + + SGI + ++ E
Sbjct: 274 --KVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARSEILKIHASGITKHGDIDYE 331
Query: 330 DIVKLVDTFPGQSI 343
IVKL + F G +
Sbjct: 332 AIVKLAENFNGADL 345
>gi|390332227|ref|XP_001186944.2| PREDICTED: 26S protease regulatory subunit 10B-like isoform 1
[Strongylocentrotus purpuratus]
gi|390332229|ref|XP_003723449.1| PREDICTED: 26S protease regulatory subunit 10B-like isoform 2
[Strongylocentrotus purpuratus]
Length = 389
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGAPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFAYARD----HEP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + G +V II+
Sbjct: 228 CVVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG--------KVKIIM 277
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + + I + ++ E +VKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPITKHGDIDYEAVVKLSDG 337
Query: 338 FPGQSI 343
F G +
Sbjct: 338 FNGADL 343
>gi|332374594|gb|AEE62438.1| unknown [Dendroctonus ponderosae]
Length = 392
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 90/186 (48%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYAKD----HQP 230
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQLTLMELLN-----QMDGF---DSLGQVKMIM 280
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P R + + + +G I + + E IVKL D+
Sbjct: 281 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGEIDYEAIVKLSDS 340
Query: 338 FPGQSI 343
F G +
Sbjct: 341 FNGADL 346
>gi|327286230|ref|XP_003227834.1| PREDICTED: 26S protease regulatory subunit 10B-like, partial
[Anolis carolinensis]
Length = 382
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 165 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 220
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 221 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 270
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 271 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 330
Query: 338 FPGQSI 343
F G +
Sbjct: 331 FNGADL 336
>gi|428217192|ref|YP_007101657.1| AAA ATPase [Pseudanabaena sp. PCC 7367]
gi|427988974|gb|AFY69229.1| AAA ATPase central domain protein [Pseudanabaena sp. PCC 7367]
Length = 503
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 24/164 (14%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-MSAGELESGNAGEPAKLIRQRY 211
LPN K L++GI +G GKS C A + P++ + G L G+ R
Sbjct: 260 LPNPKGVLLMGI---QGTGKSL-CAKAIAHLWRLPLLRLDVGRLFGSLVGQS----ESRT 311
Query: 212 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 271
R+ + + C L+++++D MGGT+ + +Q V TL+ +
Sbjct: 312 RQTIQLTEALAPCILWMDEIDKAFAGMGGTSTDSGTSQRVFGTLLT-------------W 358
Query: 272 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 313
QE++ V ++ T N+ + L L+R GR ++ ++ P++ +R
Sbjct: 359 MQEKSSPVFVVATANNINALPPELLRKGRFDEIFFINLPSQAER 402
>gi|50424825|ref|XP_461002.1| DEHA2F14740p [Debaryomyces hansenii CBS767]
gi|49656671|emb|CAG89370.1| DEHA2F14740p [Debaryomyces hansenii CBS767]
Length = 415
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 24/196 (12%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 190 IKSPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFAYA- 248
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 249 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 297
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPK----- 328
+ +I+ N TL L+R GR+++ P R+ + T V K
Sbjct: 298 --QTKVIMATNRPDTLDPALLRAGRLDRKIEIGLPNEAGRLEIFK--IHTTKVAKQGEFD 353
Query: 329 -EDIVKLVDTFPGQSI 343
E +VK+ D F G I
Sbjct: 354 FEAVVKMSDGFNGADI 369
>gi|242064412|ref|XP_002453495.1| hypothetical protein SORBIDRAFT_04g006830 [Sorghum bicolor]
gi|241933326|gb|EES06471.1| hypothetical protein SORBIDRAFT_04g006830 [Sorghum bicolor]
Length = 400
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 171 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYAR 230
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 231 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 276
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P + R+ V +GI + + E
Sbjct: 277 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHAAGIAKHGEIDYE 336
Query: 330 DIVKLVDTFPGQSI 343
+VKL + F G +
Sbjct: 337 AVVKLAEGFNGADL 350
>gi|320583831|gb|EFW98044.1| 26S protease subunit, putative [Ogataea parapolymorpha DL-1]
Length = 422
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A+L+R+ + A
Sbjct: 197 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLVREMFSYA- 255
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 256 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 304
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+ +I+ N TL L+R GR+++ P R+ + S I + E
Sbjct: 305 --QTKVIMATNRPDTLDPALLRAGRLDRKIEIPLPNESGRLEIFKIHTSKIKKQGEFDFE 362
Query: 330 DIVKLVDTFPGQSI 343
+VK+ D F G I
Sbjct: 363 ALVKMSDGFNGADI 376
>gi|268325728|emb|CBH39316.1| cell division control protein 48 [uncultured archaeon]
Length = 739
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 18/167 (10%)
Query: 149 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 208
+ +L N K P + ++G G GK+ + V + N I + EL S GE K +R
Sbjct: 484 DVFSLLNTKPPKGILLFGPPGTGKTMLVKAVANESDANFISIKGPELLSKWVGESEKAVR 543
Query: 209 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 268
+ +R+A K+ C +F++++D+ A G V ++V+ L
Sbjct: 544 EIFRKA----KQSSPCIIFLDEIDSIAPIRGAGLDSHVTERVVSQILTE----------- 588
Query: 269 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 313
M EE V II N + L+R GR+++ + +PT+E R
Sbjct: 589 -MDGLEELKDVMIIAATNRPDIIDPALLRPGRLDRLIYIQSPTKEAR 634
>gi|209876752|ref|XP_002139818.1| 26S proteasome regulatory subunit S10B [Cryptosporidium muris RN66]
gi|209555424|gb|EEA05469.1| 26S proteasome regulatory subunit S10B, putative [Cryptosporidium
muris RN66]
Length = 391
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + M + + + A + GE A++IR+ + A
Sbjct: 166 IKTPKGVLLYGPPGTGKTLLARAMASSMSCSFMKVVASAIVDKYIGESARVIREMFGYA- 224
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA G+ +Q T ++ + TLM + + QL G +E
Sbjct: 225 ---KEHQPCVIFMDEIDAIGGKR--FSQGTSADREIQRTLMELLN-----QLDGF---DE 271
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
V II+ N L L+R GR+++ P R+ + + + DN+ +
Sbjct: 272 LGAVKIIMATNRPDVLDPALLRPGRLDRKVEIPLPNETSRVEILRIHAEKLSKQDNIDYD 331
Query: 330 DIVKLVDTFPGQSI 343
I KL D F G +
Sbjct: 332 SICKLCDGFNGADL 345
>gi|293333701|ref|NP_001169629.1| uncharacterized protein LOC100383510 [Zea mays]
gi|224030533|gb|ACN34342.1| unknown [Zea mays]
gi|413926226|gb|AFW66158.1| hypothetical protein ZEAMMB73_031713 [Zea mays]
Length = 400
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 171 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYAR 230
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 231 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 276
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P + R+ V +GI + + E
Sbjct: 277 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHAAGIAKHGEIDYE 336
Query: 330 DIVKLVDTFPGQSI 343
+VKL + F G +
Sbjct: 337 AVVKLAEGFNGADL 350
>gi|448395892|ref|ZP_21568986.1| proteasome-activating nucleotidase [Haloterrigena salina JCM 13891]
gi|445660473|gb|ELZ13269.1| proteasome-activating nucleotidase [Haloterrigena salina JCM 13891]
Length = 405
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R + D+ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETNATFIKMAGSELVHKFIGEGAKLVRDLF----DVAREHEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|449504593|ref|XP_002200452.2| PREDICTED: 26S protease regulatory subunit 10B [Taeniopygia
guttata]
Length = 391
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 174 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 229
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 230 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 279
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 280 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 339
Query: 338 FPGQSI 343
F G +
Sbjct: 340 FNGADL 345
>gi|389739234|gb|EIM80428.1| 26S proteasome regulatory complex ATPase RPT4 [Stereum hirsutum
FP-91666 SS1]
Length = 399
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V A M N + + + + GE A+++R+ + A
Sbjct: 175 IKPPKGVLLYGPPGTGKTLLARAVAATMQTNFLKVVSSAIVDKYIGESARVVREMFGYAR 234
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 235 D----HEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 280
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKE 329
R +I+ N TL L+R GR+++ P R + + + S + + ++ E
Sbjct: 281 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEVPLPNEQARLEILKIHSNPVNKHGDIDYE 340
Query: 330 DIVKLVDTFPGQSI 343
IVKL D F G +
Sbjct: 341 AIVKLTDAFNGADL 354
>gi|428215715|ref|YP_007088859.1| AAA ATPase [Oscillatoria acuminata PCC 6304]
gi|428004096|gb|AFY84939.1| AAA+ family ATPase [Oscillatoria acuminata PCC 6304]
Length = 544
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 23/164 (14%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
+PN K L++GI +G GKS + + + + + + G L G GE R R
Sbjct: 279 IPNPKGVLLVGI---QGTGKSLSAKTIAHEWRLPLLRLDTGRLFGGIVGES----ESRLR 331
Query: 213 EAADIIKKGKMCCLFINDLDAGAGRM-GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 271
+ + + C L+I+++D G + GGT + ++ V TL+ +
Sbjct: 332 QMIQLAEAMSPCVLWIDEIDKAFGNISGGTDGDSGTSRRVFGTLIT-------------W 378
Query: 272 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 313
QE+ V I+ T N+ L A L+R GR ++ ++ PT +R
Sbjct: 379 MQEKTAPVFIVATANNVRILPAELLRKGRFDEIFFLNLPTETER 422
>gi|190347457|gb|EDK39727.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 418
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 97/225 (43%), Gaps = 22/225 (9%)
Query: 127 NTLDGLYIAPAFMDKVVVHITKN--FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 184
NT+ GL + +V+ KN +K P + ++G G GK+ + V A +G
Sbjct: 162 NTIGGLTEQVRELREVIELPLKNPELFTRVGIKSPKGVLLYGPPGTGKTLLAKAVAATIG 221
Query: 185 INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQY 244
N I A + GE A+LIR+ + A K+ C +F++++DA GR ++
Sbjct: 222 ANFIFSPASAIVDKYIGESARLIREMFAYA----KEHAPCIIFMDEVDAIGGRR--FSEG 275
Query: 245 TVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 304
T ++ + TLM + + G + +I+ N TL L+R GR+++
Sbjct: 276 TSADREIQRTLMELLNQMDGFDTLG--------QTKVIMATNRPDTLDPALLRAGRLDRK 327
Query: 305 YWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDTFPGQSI 343
P R+ + S + + E +VK+ D F G I
Sbjct: 328 IEIGLPNEAGRLEIFKIHTSKVSKQGEFDFEAVVKMSDGFNGADI 372
>gi|284164772|ref|YP_003403051.1| 26S proteasome subunit P45 family [Haloterrigena turkmenica DSM
5511]
gi|284014427|gb|ADB60378.1| 26S proteasome subunit P45 family [Haloterrigena turkmenica DSM
5511]
Length = 405
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R + D+ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETNATFIKMAGSELVHKFIGEGAKLVRDLF----DVAREHEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|225216858|gb|ACN85156.1| 26S protease regulatory subunit S10B [Oryza nivara]
Length = 401
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 172 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFSYA- 230
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 231 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 277
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P + R+ V +GI + + E
Sbjct: 278 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHAAGIAKHGEIDYE 337
Query: 330 DIVKLVDTFPGQSI 343
+VKL + F G +
Sbjct: 338 AVVKLAEGFNGADL 351
>gi|321461635|gb|EFX72665.1| hypothetical protein DAPPUDRAFT_308117 [Daphnia pulex]
Length = 389
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 91/186 (48%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 277
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P R + + + +G I + ++ E +VKL D+
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGDIDYEAVVKLSDS 337
Query: 338 FPGQSI 343
F G +
Sbjct: 338 FNGADL 343
>gi|169806672|ref|XP_001828080.1| 19S-PA700 proteasome regulatory particle subunit Rpt4p-S10b
[Enterocytozoon bieneusi H348]
gi|161779208|gb|EDQ31232.1| 19S-PA700 proteasome regulatory particle subunit Rpt4p-S10b
[Enterocytozoon bieneusi H348]
Length = 388
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 86/185 (46%), Gaps = 19/185 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ ++V + M + I + A L GE AK++R+ + A +
Sbjct: 172 LYGPPGTGKTLLAKIVASTMDVTFIKVVASSLIEKYIGESAKMVREMFAYA----RLKAP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA G T + +++ V TLM + + QL G + + V +I+
Sbjct: 228 CIIFLDEIDAIGG--ARTNESNSSDREVQRTLMELLN-----QLDGFSDLDG---VKVIM 277
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRTDNVPKEDIVKLVDTF 338
N L + L+R GR+++ P R++ + + S D + + IVK+ F
Sbjct: 278 ATNRPDILDSALLRPGRLDRKIEIPLPNEHGRKEILKIHSKNMNQDQIDLDTIVKMSSGF 337
Query: 339 PGQSI 343
G +
Sbjct: 338 NGADL 342
>gi|226505536|ref|NP_001148485.1| 26S protease regulatory subunit S10B [Zea mays]
gi|194702936|gb|ACF85552.1| unknown [Zea mays]
gi|195619706|gb|ACG31683.1| 26S protease regulatory subunit S10B [Zea mays]
gi|413936158|gb|AFW70709.1| 26S protease regulatory subunit S10B [Zea mays]
Length = 400
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 171 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYAR 230
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 231 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 276
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P + R+ V +GI + + E
Sbjct: 277 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHAAGIAKHGEIDYE 336
Query: 330 DIVKLVDTFPGQSI 343
+VKL + F G +
Sbjct: 337 AVVKLAEGFNGADL 350
>gi|345567910|gb|EGX50812.1| hypothetical protein AOL_s00054g898 [Arthrobotrys oligospora ATCC
24927]
Length = 393
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 95/213 (44%), Gaps = 24/213 (11%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASTLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P + R+ V +G+ + + E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEVLKIHAAGVAKAGEIDYE 333
Query: 330 DIVKLVDTFPGQS----IDFFGALRARVYDDEV 358
+VK+ D F G + G R Y DE+
Sbjct: 334 GLVKMSDGFNGADLRNVVTEAGMFAIRDYRDEI 366
>gi|257057411|ref|YP_003135243.1| AAA+ family ATPase [Saccharomonospora viridis DSM 43017]
gi|256587283|gb|ACU98416.1| AAA+ family ATPase [Saccharomonospora viridis DSM 43017]
Length = 747
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 91/202 (45%), Gaps = 23/202 (11%)
Query: 110 MSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVV--VHITKNFLNLPNVKVPLILGIWGG 167
MS+ D ++ G +LD+ D + A + V+ + +F L V P + I+G
Sbjct: 473 MSTTDTLATG--GITLDDVGDMADVKQALTESVLWPLRYPDSFERL-GVAPPRGVLIYGP 529
Query: 168 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227
G GK+F + +N + EL GE + +R+ +R+AA+ +F
Sbjct: 530 PGNGKTFLVRALAGTGALNVFSVKGAELMDKWVGESERAVRELFRKAAE----AAPSLVF 585
Query: 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 287
++++DA A R G ++ V++++V A L + + E R ++V +
Sbjct: 586 LDEVDALAPRRGQSSDSGVSDRVVAALLTEL-------------DGVEPLRDVVVVGATN 632
Query: 288 FSTLYAP-LIRDGRMEKFYWAP 308
L P L+R GR+E+ + P
Sbjct: 633 RPELVDPALLRPGRLERLIYVP 654
>gi|448397657|ref|ZP_21569690.1| proteasome-activating nucleotidase [Haloterrigena limicola JCM
13563]
gi|445672756|gb|ELZ25327.1| proteasome-activating nucleotidase [Haloterrigena limicola JCM
13563]
Length = 405
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R + D+ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----DVAREHEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|288930616|ref|YP_003434676.1| ATPase AAA, CDC48 subfamily [Ferroglobus placidus DSM 10642]
gi|288892864|gb|ADC64401.1| AAA family ATPase, CDC48 subfamily [Ferroglobus placidus DSM 10642]
Length = 791
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 87/195 (44%), Gaps = 22/195 (11%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V + N I + EL S GE K +R+ +R+A
Sbjct: 544 IKPPKGILLYGPPGTGKTLLAKAVANESNANFISVKGPELLSKWVGESEKHVREMFRKAR 603
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ C LF +++D+ A R G V ++V+ L +L G+ EE
Sbjct: 604 QVAP----CVLFFDEIDSLAPRRGTGGDTHVTERVVSQLL---------TELDGL---EE 647
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV------CSGIFRTDNVPKE 329
V +I N + L+R GR+E+ + P +++ + G+ ++V E
Sbjct: 648 LKDVVVIAATNRPDMIDPALLRPGRLERHIYIPPPDEKARLEIFKIHTRGMPLDEDVNLE 707
Query: 330 DIVKLVDTFPGQSID 344
++ K + + G I+
Sbjct: 708 ELAKKTEGYSGADIE 722
>gi|195493667|ref|XP_002094514.1| GE21865 [Drosophila yakuba]
gi|194180615|gb|EDW94226.1| GE21865 [Drosophila yakuba]
Length = 398
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + ++M N + + + + GE A+LIR+ + A D +
Sbjct: 181 LYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIREMFAYARD----HQP 236
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + G +V +I+
Sbjct: 237 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKMIM 286
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P R D + + +G + + + E +VKL D
Sbjct: 287 ATNRPDTLDPALLRPGRLDRKLEIPLPNEVARMDILKIHAGPLAKRGEIDYEAVVKLSDM 346
Query: 338 FPGQSI 343
F G +
Sbjct: 347 FNGADL 352
>gi|207340961|gb|EDZ69150.1| YOR259Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 421
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 320
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
II+ N TL L+R GR+++ P + R+ + + + +T E
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFE 377
Query: 330 DIVKLVDTFPGQSI 343
VK+ D F G I
Sbjct: 378 AAVKMSDGFNGADI 391
>gi|434393705|ref|YP_007128652.1| AAA ATPase central domain protein [Gloeocapsa sp. PCC 7428]
gi|428265546|gb|AFZ31492.1| AAA ATPase central domain protein [Gloeocapsa sp. PCC 7428]
Length = 504
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 85/201 (42%), Gaps = 30/201 (14%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
LP+ + L++GI +G GKS + + + + + G L G GE R R
Sbjct: 256 LPHPRGLLLVGI---QGTGKSLTAKAIAHHWHLPLLRLDVGRLFGGLVGES----ESRTR 308
Query: 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 272
+ + + C L+I+++D +GG +++ + +A
Sbjct: 309 QMIQVAEALSPCILWIDEIDKAFAGIGGKGDAGTTSRVFGTFITWLA------------- 355
Query: 273 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS---GIFRTDNVP 327
E+ V ++ T ND +L ++R GR ++ ++ PT+E+R + + R N+
Sbjct: 356 -EKTSPVFVVATANDIQSLPPEMLRKGRFDEIFFVGLPTQEERKAIFTVHLSRLRPHNIK 414
Query: 328 KEDIVKLVDTFPGQSIDFFGA 348
DI +L P DF GA
Sbjct: 415 TYDIERLAYETP----DFSGA 431
>gi|2960216|emb|CAA11285.1| 26S proteasome regulatory ATPase subunit 10b (S10b) [Manduca sexta]
Length = 396
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 179 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 234
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 235 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKIIM 284
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + + I + + E +VKL DT
Sbjct: 285 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPIAKHGEMDYEAVVKLSDT 344
Query: 338 FPGQSI 343
F G +
Sbjct: 345 FNGADL 350
>gi|448343686|ref|ZP_21532607.1| proteasome-activating nucleotidase [Natrinema gari JCM 14663]
gi|445622602|gb|ELY76053.1| proteasome-activating nucleotidase [Natrinema gari JCM 14663]
Length = 405
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R + D+ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----DVAREHEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|423074649|ref|ZP_17063374.1| ATP-dependent metallopeptidase HflB [Desulfitobacterium hafniense
DP7]
gi|361854469|gb|EHL06535.1| ATP-dependent metallopeptidase HflB [Desulfitobacterium hafniense
DP7]
Length = 493
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 16/165 (9%)
Query: 188 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK--MCCLFINDLDAGAGRMGGTTQYT 245
+ +S E AG A +R+ +++A ++ KK K +FI+++D + G +
Sbjct: 127 LAVSGSEFVEMYAGVGADRVRRLFKKARELAKKEKKDRAIIFIDEMDILGAKRGSNVSHH 186
Query: 246 VNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 305
+Q +N L V++ G+ N E+ P++ +I N L L+R GR ++
Sbjct: 187 EYDQTLNQLL---------VEMDGLGNSEQGPKILMIAATNRAEALDPALVRPGRFDRLV 237
Query: 306 WA--PTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGA 348
P +E R+ + T N P V L + ++ +F GA
Sbjct: 238 KVDLPDKEGRLAILK--IHTKNKPLASCVDL-EQIAQETYNFSGA 279
>gi|213402523|ref|XP_002172034.1| 26S protease regulatory subunit S10B [Schizosaccharomyces japonicus
yFS275]
gi|212000081|gb|EEB05741.1| 26S protease regulatory subunit S10B [Schizosaccharomyces japonicus
yFS275]
Length = 389
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 88/187 (47%), Gaps = 20/187 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + +G+N + + + + GE A++IR+ + A
Sbjct: 164 IKPPKGVLLYGPPGTGKTLLARAVASTLGVNFLKVVSSAIVDKYIGESARIIREMFSYA- 222
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 223 ---KEHEPCVIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 271
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
R +I+ N TL L+R GR+++ P + R+ + S + + ++ E
Sbjct: 272 --RTKVIMATNRPDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLSKVAKQGDIDYE 329
Query: 330 DIVKLVD 336
IVKL D
Sbjct: 330 AIVKLTD 336
>gi|448344921|ref|ZP_21533822.1| proteasome-activating nucleotidase [Natrinema altunense JCM 12890]
gi|445636471|gb|ELY89632.1| proteasome-activating nucleotidase [Natrinema altunense JCM 12890]
Length = 405
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R + D+ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----DVAREHEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|89894709|ref|YP_518196.1| hypothetical protein DSY1963 [Desulfitobacterium hafniense Y51]
gi|89334157|dbj|BAE83752.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 491
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 16/165 (9%)
Query: 188 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK--MCCLFINDLDAGAGRMGGTTQYT 245
+ +S E AG A +R+ +++A ++ KK K +FI+++D + G +
Sbjct: 125 LAVSGSEFVEMYAGVGADRVRRLFKKARELAKKEKKDRAIIFIDEMDILGAKRGSNVSHH 184
Query: 246 VNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 305
+Q +N L V++ G+ N E+ P++ +I N L L+R GR ++
Sbjct: 185 EYDQTLNQLL---------VEMDGLGNSEQGPKILMIAATNRAEALDPALVRPGRFDRLV 235
Query: 306 WA--PTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGA 348
P +E R+ + T N P V L + ++ +F GA
Sbjct: 236 KVDLPDKEGRLAILK--IHTKNKPLASCVDL-EQIAQETYNFSGA 277
>gi|256073723|ref|XP_002573178.1| 26S protease regulatory subunit S10b [Schistosoma mansoni]
gi|360045512|emb|CCD83060.1| putative 26s protease regulatory subunit S10b [Schistosoma mansoni]
Length = 395
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ +N + + + + GE A+LIR+ + A D +
Sbjct: 178 LYGPPGTGKTLLARAVASQLDVNFLKVVSSGIVDKYIGESARLIREMFNYARD----HQP 233
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR T+ T ++ + TLM + + G +V +I+
Sbjct: 234 CIIFMDEIDAIGGRR--FTEGTSADREIQRTLMELLNQMDGFDALG--------QVKMIM 283
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P R D + + + I + + E +VKL D
Sbjct: 284 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARMDVLKIHAAPIAKHGEIDWEAVVKLSDG 343
Query: 338 FPGQSI 343
F G +
Sbjct: 344 FNGADL 349
>gi|389610171|dbj|BAM18697.1| 26S protease regulatory subunit rpt4 [Papilio xuthus]
Length = 396
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 179 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 234
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 235 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKIIM 284
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + + I + + E +VKL DT
Sbjct: 285 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPIAKHGEMDYEAVVKLSDT 344
Query: 338 FPGQSI 343
F G +
Sbjct: 345 FNGADL 350
>gi|365758247|gb|EHN00098.1| Rpt4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 437
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 320
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK------E 329
II+ N TL L+R GR+++ P + + T+ V K E
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTEKVKKTGEFDFE 377
Query: 330 DIVKLVDTFPGQSI 343
VK+ D F G I
Sbjct: 378 AAVKMSDGFNGADI 391
>gi|448337724|ref|ZP_21526798.1| proteasome-activating nucleotidase [Natrinema pallidum DSM 3751]
gi|445624925|gb|ELY78296.1| proteasome-activating nucleotidase [Natrinema pallidum DSM 3751]
Length = 405
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R + D+ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----DVAREHEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|1147800|gb|AAA85134.1| Sug2p [Saccharomyces cerevisiae]
Length = 437
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 320
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
II+ N TL L+R GR+++ P + R+ + + + +T E
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFE 377
Query: 330 DIVKLVDTFPGQSI 343
VK+ D F G I
Sbjct: 378 AAVKMSDGFNGADI 391
>gi|397774902|ref|YP_006542448.1| 26S proteasome subunit P45 family [Natrinema sp. J7-2]
gi|397683995|gb|AFO58372.1| 26S proteasome subunit P45 family [Natrinema sp. J7-2]
Length = 421
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R + D+ ++ +
Sbjct: 204 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----DVAREHEP 259
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 260 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 309
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 310 ATNRFDMLDRAILRPGRFDRLIEVP 334
>gi|448328071|ref|ZP_21517387.1| proteasome-activating nucleotidase [Natrinema versiforme JCM 10478]
gi|445616666|gb|ELY70286.1| proteasome-activating nucleotidase [Natrinema versiforme JCM 10478]
Length = 405
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R + D+ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----DVAREHEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|398365977|ref|NP_014902.3| proteasome regulatory particle base subunit RPT4 [Saccharomyces
cerevisiae S288c]
gi|2506090|sp|P53549.4|PRS10_YEAST RecName: Full=26S protease subunit RPT4; AltName: Full=26S protease
subunit SUG2; AltName: Full=Proteasomal cap subunit
gi|403071972|pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
gi|1420585|emb|CAA99481.1| CRL13 [Saccharomyces cerevisiae]
gi|1931623|gb|AAB51594.1| proteasome cap subunit [Saccharomyces cerevisiae]
gi|190407563|gb|EDV10830.1| 26S proteasome cap subunit component [Saccharomyces cerevisiae
RM11-1a]
gi|256269612|gb|EEU04894.1| Rpt4p [Saccharomyces cerevisiae JAY291]
gi|259149735|emb|CAY86539.1| Rpt4p [Saccharomyces cerevisiae EC1118]
gi|285815133|tpg|DAA11026.1| TPA: proteasome regulatory particle base subunit RPT4
[Saccharomyces cerevisiae S288c]
gi|323302973|gb|EGA56777.1| Rpt4p [Saccharomyces cerevisiae FostersB]
gi|323331571|gb|EGA72986.1| Rpt4p [Saccharomyces cerevisiae AWRI796]
gi|323335464|gb|EGA76750.1| Rpt4p [Saccharomyces cerevisiae Vin13]
gi|323346438|gb|EGA80726.1| Rpt4p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352176|gb|EGA84713.1| Rpt4p [Saccharomyces cerevisiae VL3]
gi|349581412|dbj|GAA26570.1| K7_Rpt4p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392296586|gb|EIW07688.1| Rpt4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 437
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 320
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
II+ N TL L+R GR+++ P + R+ + + + +T E
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFE 377
Query: 330 DIVKLVDTFPGQSI 343
VK+ D F G I
Sbjct: 378 AAVKMSDGFNGADI 391
>gi|324508906|gb|ADY43754.1| 26S protease regulatory subunit 4 [Ascaris suum]
Length = 422
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 100/235 (42%), Gaps = 39/235 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V I + +L N+GE AKL+R+ +R A K+
Sbjct: 206 LYGEPGTGKTLLAKAVAHSTSATFIRATGADLIQKNSGEGAKLVRELFRLA----KESAP 261
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNN---QMVNATLMNIADNPTNVQLPGMYNQEENPRVP 280
C +FI+++DA GT +Y ++ + V TL+ + + Q+ G E V
Sbjct: 262 CIVFIDEIDA-----VGTKRYDTSSGGEREVQRTLLELLN-----QMDGF---ESRGDVK 308
Query: 281 IIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGV------CSGIFRTDNVPKEDIVKL 334
II+ N L LIR GR+++ P +++ + SG+ D V E I+
Sbjct: 309 IIMATNRIDVLDPALIRPGRIDRKIELPKPDEKTKLRIFQIHTSGMKIADEVKFEKIIAK 368
Query: 335 VDTFPGQSIDFFG------ALRARVYDDEVRKWISEVGIERIGKR-LVNSKEGPP 382
+ G ALRA+ RK + E+ +R L+N K P
Sbjct: 369 ERSLSGADCKAICTEAGMLALRAQ------RKLVCMEDFEKAMERVLLNKKSDAP 417
>gi|433591994|ref|YP_007281490.1| 26S proteasome subunit P45 family [Natrinema pellirubrum DSM 15624]
gi|448334330|ref|ZP_21523508.1| proteasome-activating nucleotidase [Natrinema pellirubrum DSM
15624]
gi|433306774|gb|AGB32586.1| 26S proteasome subunit P45 family [Natrinema pellirubrum DSM 15624]
gi|445620216|gb|ELY73722.1| proteasome-activating nucleotidase [Natrinema pellirubrum DSM
15624]
Length = 405
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R + D+ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----DVAREHEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|384488185|gb|EIE80365.1| 26S protease regulatory subunit 10B [Rhizopus delemar RA 99-880]
Length = 396
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
VK P + ++G G GK+ + V + + +N + + + + GE A+LIR+ + A
Sbjct: 171 VKPPKGVLLYGPPGTGKTLLAKAVASTLQVNFLKVVSSAIVDKYIGESARLIREMFGYA- 229
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 230 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 278
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSG-IFRTDNVPKE 329
+ +I+ N TL L+R GR+++ P R + + + +G I + ++ E
Sbjct: 279 --QTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAGHIAKHGDIDYE 336
Query: 330 DIVKLVDTFPGQSI 343
IVKL D F G +
Sbjct: 337 AIVKLSDGFNGADL 350
>gi|448609636|ref|ZP_21660667.1| ATPase AAA [Haloferax mucosum ATCC BAA-1512]
gi|445746653|gb|ELZ98114.1| ATPase AAA [Haloferax mucosum ATCC BAA-1512]
Length = 587
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+ +P +L ++G G GKS+ E + ++G ++S G++ S AK ++Q + EA
Sbjct: 374 IPIPSLL-LYGPPGTGKSYLAEAIAGEIGYPYAILSGGDILSQWINASAKQVKQLFSEAK 432
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 258
I + +F++++D+ + GG Q+ + ++VN L ++
Sbjct: 433 AIADQTGGVVVFVDEIDSVLSKRGGANQHAEDQKVVNEFLTHL 475
>gi|283046720|ref|NP_001164306.1| peroxisome biogenesis factor 1 [Danio rerio]
gi|154200022|gb|ABS71030.1| peroxin 1 [Danio rerio]
Length = 1237
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 102/222 (45%), Gaps = 28/222 (12%)
Query: 150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 209
F +LP + +L ++G G GK+ V + G+N I + EL S G + +R
Sbjct: 822 FSSLPLRQCSGVL-LYGAPGTGKTLLAGAVAKESGMNFISIKGPELLSKYIGASEQAVRD 880
Query: 210 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQ-LP 268
++ A ++ K C LF ++ D+ A R G V +++VN L + V+ L
Sbjct: 881 VFQRA----QQAKPCILFFDEFDSLAPRRGHDN-TGVTDRVVNQLLTQL----DGVEGLT 931
Query: 269 GMYNQEENPRVPIIVTGNDFSTLYAP-LIRDGRMEKFYWAPT--REDRIGVCSGIFRTDN 325
G+Y ++ + L P L+R GR++K + P RE R+ + + T +
Sbjct: 932 GVY----------VLAASSRPDLIDPALLRPGRLDKSLYCPPPDREARLEILRAL--THS 979
Query: 326 VPKEDIVKLVDTFPGQSIDFFGA-LRARVYDDEVRKWISEVG 366
VP V L D G + F GA L+A +Y+ ++ S +G
Sbjct: 980 VPLAADVDL-DQIAGATELFTGADLKALLYNAQLEAIHSSLG 1020
>gi|448382766|ref|ZP_21562261.1| proteasome-activating nucleotidase [Haloterrigena thermotolerans
DSM 11522]
gi|445661235|gb|ELZ14026.1| proteasome-activating nucleotidase [Haloterrigena thermotolerans
DSM 11522]
Length = 405
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R + D+ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----DVAREHEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|332373814|gb|AEE62048.1| unknown [Dendroctonus ponderosae]
Length = 391
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 174 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYAKD----HQP 229
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 230 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 279
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P R + + + +G I + + E IVKL D
Sbjct: 280 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGEIDYEAIVKLSDN 339
Query: 338 FPGQSI 343
F G +
Sbjct: 340 FNGADL 345
>gi|226469390|emb|CAX70174.1| 26S proteasome regulatory subunit T4 [Schistosoma japonicum]
Length = 395
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ +N + + + + GE A+LIR+ + A D +
Sbjct: 178 LYGPPGTGKTLLARAVASQLDVNFLKVVSSGIVDKYIGESARLIREMFSYARD----HQP 233
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR T+ T ++ + TLM + + G +V +I+
Sbjct: 234 CIIFMDEIDAIGGRR--FTEGTSADREIQRTLMELLNQMDGFDALG--------QVKMIM 283
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P R D + + + I + + E +VKL D
Sbjct: 284 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDVLKIHAAPIAKHGEIDWEAVVKLSDG 343
Query: 338 FPGQSI 343
F G +
Sbjct: 344 FNGADL 349
>gi|218190265|gb|EEC72692.1| hypothetical protein OsI_06267 [Oryza sativa Indica Group]
Length = 400
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 171 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYAR 230
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 231 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 276
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P + R+ V +GI + + E
Sbjct: 277 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEVLKIHAAGIAKHGEIDYE 336
Query: 330 DIVKLVDTFPGQSI 343
+VKL + F G +
Sbjct: 337 AVVKLAEGFNGADL 350
>gi|225713006|gb|ACO12349.1| 26S protease regulatory subunit S10B [Lepeophtheirus salmonis]
gi|290561741|gb|ADD38268.1| 26S protease regulatory subunit S10B [Lepeophtheirus salmonis]
Length = 392
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 230
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + + G +V +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDVLG--------QVKMIM 280
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTREDR-----IGVCSG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P D+ + + +G I + + E +VKL D
Sbjct: 281 ATNRPDTLDPALLRPGRLDRKVEIPLPNDQARLEILKIHAGPITKHGEIDYEAVVKLSDG 340
Query: 338 FPGQSI 343
F G +
Sbjct: 341 FNGADL 346
>gi|194869501|ref|XP_001972464.1| GG15543 [Drosophila erecta]
gi|190654247|gb|EDV51490.1| GG15543 [Drosophila erecta]
Length = 398
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + ++M N + + + + GE A+LIR+ + A D +
Sbjct: 181 LYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIREMFAYARD----HQP 236
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + G +V +I+
Sbjct: 237 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKMIM 286
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P R D + + +G + + + E +VKL D
Sbjct: 287 ATNRPDTLDPALLRPGRLDRKLEIPLPNEVARMDILKIHAGPLAKRGEIDYEAVVKLSDM 346
Query: 338 FPGQSI 343
F G +
Sbjct: 347 FNGADL 352
>gi|385302903|gb|EIF47009.1| 26s protease subunit rpt4 [Dekkera bruxellensis AWRI1499]
Length = 359
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A+L+R+ + A
Sbjct: 134 IKQPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARLVREMFSYA- 192
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 193 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG------ 241
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
+ +I+ N TL L+R GR+++ P + R+ + S + + + E
Sbjct: 242 --QTKVIMATNRPDTLDPALLRAGRLDRKIEVPLPNEAGRLEIFKIHMSKVQKKGEIELE 299
Query: 330 DIVKLVDTFPGQSI 343
+V++ D F G I
Sbjct: 300 TLVRMSDGFNGADI 313
>gi|71028288|ref|XP_763787.1| 26S proteasome regulatory subunit [Theileria parva strain Muguga]
gi|68350741|gb|EAN31504.1| 26S proteasome regulatory subunit, putative [Theileria parva]
Length = 415
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 22/239 (9%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + +G N + + A + GE AK+IR+ + A
Sbjct: 190 IKPPKGVLLYGPPGTGKTLLARALANDLGCNFLKVVASAVVDKYIGESAKIIREMFGYAK 249
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +FI+++DA GR +Q T ++ + TLM + L G +E
Sbjct: 250 D----NQPCIIFIDEIDAIGGRR--FSQGTSADREIQRTLMELL-----THLDGF---DE 295
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCSGIFRTDNVPK----E 329
+V II+ N L L+R GR+++ P + RI + + N+
Sbjct: 296 LGQVKIIMATNRPDVLDPALLRPGRIDRKIEIPLPNETARIEILKIHTQKLNIQYPINFN 355
Query: 330 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSK--EGPPTFEQ 386
+I KL D F G + +R +I E + ++L +K EG ++EQ
Sbjct: 356 NICKLCDGFNGADLRNICTEAGIHAIRNMRDYIIEEDFFKAARKLTENKKLEGTLSYEQ 414
>gi|429964182|gb|ELA46180.1| 26S proteasome subunit P45 family protein [Vavraia culicis
'floridensis']
Length = 396
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 75/149 (50%), Gaps = 14/149 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + A M +N + + A L GE +++IR+ ++ A ++
Sbjct: 179 LYGPPGTGKTLLARAIAATMDVNFLKVVASSLIEKYIGESSRMIREMFQYA----RERTP 234
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA G+ +T+ + +++ V TLM + + QL G + + +V +I+
Sbjct: 235 CIIFLDEIDAIGGKR--STESSSSDREVQRTLMELLN-----QLDGFTSLD---KVKVIM 284
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTRED 312
N L L+R GR+++ P D
Sbjct: 285 ATNRPDILDPALLRPGRLDRKIEIPLPND 313
>gi|403278020|ref|XP_003930633.1| PREDICTED: 26S protease regulatory subunit 10B [Saimiri boliviensis
boliviensis]
Length = 428
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 291
Query: 284 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 338 FPGQSI 343
F G +
Sbjct: 352 FNGADL 357
>gi|115444877|ref|NP_001046218.1| Os02g0199900 [Oryza sativa Japonica Group]
gi|11094192|dbj|BAB17625.1| 26S proteasome regulatory particle triple-A ATPase subunit4 [Oryza
sativa Japonica Group]
gi|46390379|dbj|BAD15843.1| 26S proteasome regulatory particle triple-A ATPase subunit4 [Oryza
sativa Japonica Group]
gi|49388371|dbj|BAD25481.1| 26S proteasome regulatory particle triple-A ATPase subunit4 [Oryza
sativa Japonica Group]
gi|113535749|dbj|BAF08132.1| Os02g0199900 [Oryza sativa Japonica Group]
gi|125581193|gb|EAZ22124.1| hypothetical protein OsJ_05786 [Oryza sativa Japonica Group]
Length = 400
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 171 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYAR 230
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 231 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 276
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P + R+ V +GI + + E
Sbjct: 277 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEVLKIHAAGIAKHGEIDYE 336
Query: 330 DIVKLVDTFPGQSI 343
+VKL + F G +
Sbjct: 337 AVVKLAEGFNGADL 350
>gi|384501822|gb|EIE92313.1| 26S protease regulatory subunit 10B [Rhizopus delemar RA 99-880]
Length = 395
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
VK P + ++G G GK+ + V + + +N + + + + GE A+LIR+ + A
Sbjct: 170 VKPPKGVLLYGPPGTGKTLLAKAVASTLQVNFLKVVSSAIVDKYIGESARLIREMFGYA- 228
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 229 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 277
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSG-IFRTDNVPKE 329
+ +I+ N TL L+R GR+++ P R + + + +G I + ++ E
Sbjct: 278 --QTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAGNIAKHGDIDYE 335
Query: 330 DIVKLVDTFPGQSI 343
IVKL D F G +
Sbjct: 336 AIVKLSDGFNGADL 349
>gi|365986659|ref|XP_003670161.1| hypothetical protein NDAI_0E01020 [Naumovozyma dairenensis CBS 421]
gi|343768931|emb|CCD24918.1| hypothetical protein NDAI_0E01020 [Naumovozyma dairenensis CBS 421]
Length = 443
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 218 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 276
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 277 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 326
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK------E 329
II+ N TL L+R GR+++ P + + T+ V K E
Sbjct: 327 ---TKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEAGRLEIFKIHTEKVKKIGEFDFE 383
Query: 330 DIVKLVDTFPGQSI 343
VK+ D F G I
Sbjct: 384 AAVKMSDGFNGADI 397
>gi|151945344|gb|EDN63587.1| 26S proteasome cap subunit component [Saccharomyces cerevisiae
YJM789]
Length = 437
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 320
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
II+ N TL L+R GR+ + P + R+ + + + +T E
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLHRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFE 377
Query: 330 DIVKLVDTFPGQSI 343
VK+ D F G I
Sbjct: 378 AAVKMSDGFNGADI 391
>gi|56755741|gb|AAW26049.1| SJCHGC06030 protein [Schistosoma japonicum]
gi|226469386|emb|CAX70172.1| 26S proteasome regulatory subunit T4 [Schistosoma japonicum]
gi|226469388|emb|CAX70173.1| 26S proteasome regulatory subunit T4 [Schistosoma japonicum]
Length = 395
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ +N + + + + GE A+LIR+ + A D +
Sbjct: 178 LYGPPGTGKTLLARAVASQLDVNFLKVVSSGIVDKYIGESARLIREMFSYARD----HQP 233
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR T+ T ++ + TLM + + G +V +I+
Sbjct: 234 CIIFMDEIDAIGGRR--FTEGTSADREIQRTLMELLNQMDGFDALG--------QVKMIM 283
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P R D + + + I + + E +VKL D
Sbjct: 284 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDVLKIHAAPIAKHGEIDWEAVVKLSDG 343
Query: 338 FPGQSI 343
F G +
Sbjct: 344 FNGADL 349
>gi|357139615|ref|XP_003571376.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
[Brachypodium distachyon]
Length = 400
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 171 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYAR 230
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 231 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 276
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P +R + + + +GI + + E
Sbjct: 277 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRTEVLKIHAAGIAKHGEIDYE 336
Query: 330 DIVKLVDTFPGQSI 343
+VKL + F G +
Sbjct: 337 AVVKLAEGFNGADL 350
>gi|194748363|ref|XP_001956616.1| GF24499 [Drosophila ananassae]
gi|190623898|gb|EDV39422.1| GF24499 [Drosophila ananassae]
Length = 398
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + +++ N + + + + GE A+LIR+ + A D +
Sbjct: 181 LYGPPGTGKTLLARAIASQLDANFLKVVSSAIVDKYIGESARLIREMFAYARD----HQP 236
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + G +V +I+
Sbjct: 237 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKMIM 286
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P R D + + +G + + V E IVKL D
Sbjct: 287 ATNRPDTLDPALLRPGRLDRKLEIPLPNEVARMDILKIHAGPLAKRGEVDYEAIVKLSDL 346
Query: 338 FPGQSI 343
F G +
Sbjct: 347 FNGADL 352
>gi|426359627|ref|XP_004047068.1| PREDICTED: 26S protease regulatory subunit 10B-like [Gorilla
gorilla gorilla]
Length = 389
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + +++ N + + + + GE A LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAIASQLDCNFLKVVSSSIVDKYIGESAHLIREMFNYARD----HQP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 338 FPGQSI 343
F G +
Sbjct: 338 FNGADL 343
>gi|170086734|ref|XP_001874590.1| 26S proteasome regulatory complex, ATPase RPT4 [Laccaria bicolor
S238N-H82]
gi|164649790|gb|EDR14031.1| 26S proteasome regulatory complex, ATPase RPT4 [Laccaria bicolor
S238N-H82]
Length = 404
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V A + N + + + + GE A++IR+ + A
Sbjct: 175 IKPPKGVLLYGPPGTGKTLLARAVAATLQTNFLKVVSSAIVDKYIGESARVIREMFGYAR 234
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 235 D----HEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 280
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
R +I+ N TL L+R GR+++ P + R+ + + + ++ + E
Sbjct: 281 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEVPLPNEQARLEILKIHAAPVNKSGEIDYE 340
Query: 330 DIVKLVDTFPGQSI 343
IVKL D F G +
Sbjct: 341 SIVKLSDGFNGADL 354
>gi|390472883|ref|XP_002756429.2| PREDICTED: 26S protease regulatory subunit 10B-like [Callithrix
jacchus]
Length = 402
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A LIR+ + A D +
Sbjct: 185 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESAHLIREMFNYARD----HQP 240
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR+ ++ T ++ + TLM L M + RV +I+
Sbjct: 241 CIIFMDEIDAIGGRL--FSEGTSADREIQRTLME--------SLNQMDGFDTLHRVKMIM 290
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 291 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 350
Query: 338 FPGQSI 343
F G +
Sbjct: 351 FNGADL 356
>gi|431794110|ref|YP_007221015.1| ATP-dependent Zn protease [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430784336|gb|AGA69619.1| ATP-dependent Zn protease [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 493
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 16/165 (9%)
Query: 188 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK--MCCLFINDLDAGAGRMGGTTQYT 245
+ +S E AG A+ +R+ +R+A D+ KK K +FI+++D + G +
Sbjct: 127 LAISGSEFVEMYAGVGAERVRRLFRKARDLAKKEKKDRAIIFIDEMDILGAKRGSNVSHH 186
Query: 246 VNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 305
+Q +N L V++ G+ ++E+ P++ I+ N L L+R GR ++
Sbjct: 187 EYDQTLNQLL---------VEMDGLGSEEQGPQILIVAATNRAEALDPALLRPGRFDRQV 237
Query: 306 WA--PTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGA 348
P RE R+ + N P V L + ++ +F GA
Sbjct: 238 KVDLPDREGRLAILK--IHAKNKPLATDVDL-EQIAQETYNFSGA 279
>gi|119490332|ref|ZP_01622810.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
gi|119453991|gb|EAW35145.1| AAA ATPase, central region [Lyngbya sp. PCC 8106]
Length = 519
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 81/201 (40%), Gaps = 28/201 (13%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
LPN K L+ GI +G GKS + + A+ + + + G L G GE +RQ +
Sbjct: 259 LPNPKGVLLAGI---QGTGKSLSAKTIAAEWKLPLLRLDVGRLFGGIVGESESRVRQVIK 315
Query: 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 272
A + C L+I+++D + +N++ + +A
Sbjct: 316 LAEAV----SPCVLWIDEIDKAFSQNYSRGDSGTSNRVFGTFITWLA------------- 358
Query: 273 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIGVCSGIFRTDNVP 327
E+ V I+ T N+ L A LIR GR+++ +W P RE V R +
Sbjct: 359 -EKTSPVFIVATANNVEALPAELIRKGRLDEIFWIGLPSQPEREQIFQVHLHRLRPERFK 417
Query: 328 KEDIVKLVDTFPGQSIDFFGA 348
+ +S+DF GA
Sbjct: 418 NNEFD--FHLLASRSLDFSGA 436
>gi|156842059|ref|XP_001644399.1| hypothetical protein Kpol_1064p22 [Vanderwaltozyma polyspora DSM
70294]
gi|156115041|gb|EDO16541.1| hypothetical protein Kpol_1064p22 [Vanderwaltozyma polyspora DSM
70294]
Length = 432
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 14/153 (9%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 207 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 265
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 266 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 315
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
II+ N TL L+R GR+++ P
Sbjct: 316 T---KIIMATNRPDTLDPALLRPGRLDRKIEIP 345
>gi|444318988|ref|XP_004180151.1| hypothetical protein TBLA_0D01240 [Tetrapisispora blattae CBS 6284]
gi|387513193|emb|CCH60632.1| hypothetical protein TBLA_0D01240 [Tetrapisispora blattae CBS 6284]
Length = 443
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 14/153 (9%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 218 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 276
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 277 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLS-----QMDGFDNLGQ 326
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
II+ N TL L+R GR+++ P
Sbjct: 327 T---KIIMATNRPDTLDPALLRPGRLDRKIEIP 356
>gi|409041194|gb|EKM50680.1| hypothetical protein PHACADRAFT_264077 [Phanerochaete carnosa
HHB-10118-sp]
Length = 399
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V A + N + + A + GE A+++R+ + A K+ +
Sbjct: 183 LYGPPGTGKTLLARAVAATLNTNFLKVVASAIVDKYIGESARVVREMFGYA----KEHEP 238
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + R +I+
Sbjct: 239 CVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGRTKLIM 288
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + + ++ + E IVKL D+
Sbjct: 289 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAQPVNKSGEIDYEAIVKLSDS 348
Query: 338 FPGQSI 343
F G +
Sbjct: 349 FNGADL 354
>gi|330790315|ref|XP_003283243.1| hypothetical protein DICPUDRAFT_146878 [Dictyostelium purpureum]
gi|325086924|gb|EGC40307.1| hypothetical protein DICPUDRAFT_146878 [Dictyostelium purpureum]
Length = 828
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 20/174 (11%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + + + N I + EL + GE + +RQ ++ AA
Sbjct: 555 MYGPPGCGKTLLAKAIANECQANFISVKGPELLNKYVGESERAVRQVFQRAA----ASSP 610
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F ++ DA A + GG ++VN L ++ G+ + E V II
Sbjct: 611 CVIFFDEFDALAPKRGGDGGNQATERVVNQLL---------TEMDGLEKRSE---VFIIA 658
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDIVKLV 335
N + + R GR++K + PT E+R+ + + T +P + +V LV
Sbjct: 659 ATNRPDIIDPAMCRPGRLDKMVYVPLPTPEERVEILKTL--TQKIPIDPLVDLV 710
>gi|195997743|ref|XP_002108740.1| conserved hypothetical protein [Trichoplax adhaerens]
gi|190589516|gb|EDV29538.1| conserved hypothetical protein [Trichoplax adhaerens]
Length = 387
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 170 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFAYARD----HQP 225
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + G +V II+
Sbjct: 226 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKIIM 275
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + S I + + E +VKL +
Sbjct: 276 ATNRPDTLDPALLRPGRLDRKIQIALPNEQARLEILKIHASPITKHGEIDYEAVVKLAEE 335
Query: 338 FPGQSI 343
F G +
Sbjct: 336 FNGADL 341
>gi|392577846|gb|EIW70974.1| hypothetical protein TREMEDRAFT_37495 [Tremella mesenterica DSM
1558]
Length = 404
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V A + N + + + + GE A+L+R+ + A
Sbjct: 179 IKPPKGVLLYGPPGTGKTLLARAVAATLDTNFLKVVSSAIVDKYIGESARLVREMFAYA- 237
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ + ++ + TLM + + Q+ G +
Sbjct: 238 ---KEHEPCIIFMDEIDAIGGRR--FSEGSSADREIQRTLMELLN-----QMDGF---DS 284
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+ +I+ N TL L+R GR+++ P + R+ + GI ++ ++ E
Sbjct: 285 LGKTKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAKGINKSGDIDYE 344
Query: 330 DIVKLVDTFPGQSI 343
+VKL D F G +
Sbjct: 345 AVVKLSDGFNGADL 358
>gi|77993704|gb|ABB13465.1| 26S proteasome subunit RPT4 [Schistosoma mansoni]
Length = 368
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ +N + + + + GE A+LIR+ + A D +
Sbjct: 178 LYGPPGTGKTLLARAVASQLDVNFLKVVSSGIVDKYIGESARLIREMFNYARD----HQP 233
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR T+ T ++ + TLM + + G +V +I+
Sbjct: 234 CIIFMDEIDAIGGRR--FTEGTSADREIQRTLMELLNQMDGFDALG--------QVKMIM 283
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P R D + + + I + + E +VKL D
Sbjct: 284 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARMDVLKIHAAPIAKHGEIDWEAVVKLSDG 343
Query: 338 FPGQSI 343
F G +
Sbjct: 344 FNGADL 349
>gi|218198520|gb|EEC80947.1| hypothetical protein OsI_23654 [Oryza sativa Indica Group]
Length = 409
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + + + N + + + + GE A+LIR+ + A ++ +
Sbjct: 188 LYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFSYA----REHQP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + QL G +E +V +I+
Sbjct: 244 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DELGKVKMIM 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N L L+R GR+++ P + R+ V +GI + + E +VKL +
Sbjct: 294 ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEVLKIHAAGIAKHGEIDYEAVVKLAEG 353
Query: 338 FPGQSI 343
F G +
Sbjct: 354 FNGADL 359
>gi|157106603|ref|XP_001649399.1| 26S protease regulatory subunit S10b [Aedes aegypti]
gi|94469214|gb|ABF18456.1| 26S proteasome regulatory complex ATPase RPT4 [Aedes aegypti]
gi|108879818|gb|EAT44043.1| AAEL004563-PA [Aedes aegypti]
Length = 393
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 90/186 (48%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 176 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 231
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 232 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 281
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P R + + + +G I + ++ E +VKL D
Sbjct: 282 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGDIDYEAVVKLSDN 341
Query: 338 FPGQSI 343
F G +
Sbjct: 342 FNGADL 347
>gi|242398512|ref|YP_002993936.1| CDC48/VCP like protein, AAA superfamily [Thermococcus sibiricus MM
739]
gi|242264905|gb|ACS89587.1| CDC48/VCP like protein, AAA superfamily [Thermococcus sibiricus MM
739]
Length = 810
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 97/222 (43%), Gaps = 27/222 (12%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 557 LYGPPGTGKTLLAKAVATESEANFIGIRGPEVLSKWVGESEKNIREIFRKA----RQAAP 612
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A R G V ++++N L M EEN V +I
Sbjct: 613 TVIFIDEIDAIAPRRGSDVNR-VTDRLINQLLTE------------MDGIEENSGVVVIA 659
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP------KEDIVKLVDT 337
N L L+R GR ++ P + + + T NVP E++ K +
Sbjct: 660 ATNRPDILDPALLRPGRFDRIILVPAPDVKARLEIFKVHTRNVPLAKDVNLEELAKRTEG 719
Query: 338 FPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKE 379
+ G I+ +R ++ +R+ ISE GI + G R + +E
Sbjct: 720 YTGADIE--AVVREAAFNT-MRRAISE-GIIKPGTRASDIRE 757
>gi|170034396|ref|XP_001845060.1| 26S protease regulatory subunit S10B [Culex quinquefasciatus]
gi|167875693|gb|EDS39076.1| 26S protease regulatory subunit S10B [Culex quinquefasciatus]
Length = 393
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 90/186 (48%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 176 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 231
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 232 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 281
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P R + + + +G I + ++ E +VKL D
Sbjct: 282 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGDIDYEAVVKLSDN 341
Query: 338 FPGQSI 343
F G +
Sbjct: 342 FNGADL 347
>gi|375083130|ref|ZP_09730162.1| CDC48/VCP like protein, AAA superfamily, partial [Thermococcus
litoralis DSM 5473]
gi|374742216|gb|EHR78622.1| CDC48/VCP like protein, AAA superfamily, partial [Thermococcus
litoralis DSM 5473]
Length = 535
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 23/187 (12%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 282 LYGPPGTGKTLLAKAVATESEANFIGIRGPEVLSKWVGESEKNIREIFRKA----RQAAP 337
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A R G T V ++++N L M EEN V +I
Sbjct: 338 TVVFIDEIDAIAPRRG-TDVNRVTDRLINQLLTE------------MDGIEENSGVVVIA 384
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP------KEDIVKLVDT 337
N L L+R GR ++ P +++ + T NVP E++ K +
Sbjct: 385 ATNRPDILDPALLRPGRFDRLILVPAPDEKARLEIFKVHTRNVPLAEDVSLEELAKRTEG 444
Query: 338 FPGQSID 344
+ G I+
Sbjct: 445 YTGADIE 451
>gi|448098649|ref|XP_004198973.1| Piso0_002370 [Millerozyma farinosa CBS 7064]
gi|359380395|emb|CCE82636.1| Piso0_002370 [Millerozyma farinosa CBS 7064]
Length = 415
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/297 (24%), Positives = 118/297 (39%), Gaps = 58/297 (19%)
Query: 90 KGMVDTLFQAPMESGTHYAV----MSSYDYISQGLRQYSLD-NTLDGLYIAPAFMDKVVV 144
K + D F SG Y V D + G+R SLD TL + I P +D +V
Sbjct: 88 KSLDDERFIVKASSGPRYIVGCRNTIPKDKLKNGIR-VSLDMTTLTIMRILPREVDPLVY 146
Query: 145 HIT----------------------KNFLNLP----------NVKVPLILGIWGGKGQGK 172
++T + + LP +K P + ++G G GK
Sbjct: 147 NMTTFKPGEISFNGIGGLTEQIRELREVIELPLKNPELFTRIGIKSPKGVLLYGPPGTGK 206
Query: 173 SFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232
+ + V A +G N I A + GE A+LIR+ + A K+ + C +F++++D
Sbjct: 207 TLLAKAVAATIGANFIFSPASGIVDKYIGESARLIREMFAYA----KEHEPCIIFMDEID 262
Query: 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292
A GR ++ T ++ + TLM + + G + +I+ N TL
Sbjct: 263 AIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG--------QTKVIMATNRPDTLD 312
Query: 293 APLIRDGRMEKF--YWAPTREDRIGV----CSGIFRTDNVPKEDIVKLVDTFPGQSI 343
L+R GR+++ P R+ V + I + E VK+ D F G I
Sbjct: 313 PALMRAGRLDRKIEIALPNEAGRLDVFKIHTAKIAKKGEFDFEAAVKMSDGFNGADI 369
>gi|255721295|ref|XP_002545582.1| 26S protease subunit RPT4 [Candida tropicalis MYA-3404]
gi|240136071|gb|EER35624.1| 26S protease subunit RPT4 [Candida tropicalis MYA-3404]
Length = 433
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 86/194 (44%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 208 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFAYA- 266
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 267 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 315
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P R+ + S + + E
Sbjct: 316 --QTKIIMATNRPDTLDPALLRAGRLDRKIEIGLPNEAGRLEIFKIHTSKVAKQGEFDFE 373
Query: 330 DIVKLVDTFPGQSI 343
VK+ D F G I
Sbjct: 374 AAVKMSDGFNGADI 387
>gi|50292351|ref|XP_448608.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527920|emb|CAG61571.1| unnamed protein product [Candida glabrata]
Length = 436
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 14/153 (9%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 211 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 269
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 270 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 319
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
II+ N TL L+R GR+++ P
Sbjct: 320 ---TKIIMATNRPDTLDPALLRPGRLDRKIEIP 349
>gi|238879861|gb|EEQ43499.1| 26S protease subunit RPT4 [Candida albicans WO-1]
Length = 428
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 86/194 (44%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 203 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFAYA- 261
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 262 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 310
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P R+ + S + + E
Sbjct: 311 --QTKIIMATNRPDTLDPALLRAGRLDRKIEIGLPNEAGRLEIFKIHTSKVAKQGEFDFE 368
Query: 330 DIVKLVDTFPGQSI 343
VK+ D F G I
Sbjct: 369 AAVKMSDGFNGADI 382
>gi|412986591|emb|CCO15017.1| unnamed protein product [Bathycoccus prasinos]
Length = 1277
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 19/155 (12%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+F + G+ I + E+ S GE K IR+ ++ A +
Sbjct: 1011 LYGPPGVGKTFVAHAAITESGMRCIKVRGPEIMSKFIGESEKAIREVFKRA----RAAAP 1066
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
CCLF ++ D+ R G+ V +++VN L I +L G+Y +I
Sbjct: 1067 CCLFFDEFDSICPRR-GSDNAGVMDRLVNQLLTEIDGFE---ELRGVY---------VIA 1113
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV 316
T + T+ L+R GR++ + PT ++R +
Sbjct: 1114 TSSRPDTMDPALLRPGRLDNLLFLDWPTEKERYDI 1148
>gi|378755356|gb|EHY65383.1| 26S protease regulatory subunit S10B [Nematocida sp. 1 ERTm2]
Length = 389
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V P + ++G G GK+ V A + N + + + + GE +++IR+ + A
Sbjct: 164 VSAPKGVLLYGPPGTGKTLLARAVAATLDSNFLKVVSSAIIEKYIGESSRMIREMFTYA- 222
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA G+ +++ T +++ V TLM + + Q+ G EE
Sbjct: 223 ---KENQPCVIFLDEIDAIGGKR--SSESTSSDREVQRTLMELLN-----QMDGF---EE 269
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
RV +I+ N L L+R GR+++ PT + R+ + + + + ++
Sbjct: 270 LGRVKVIMATNRPDILDPALLRPGRLDRKIEIPLPTSQGRLEILKIHSAKMEKKGDIDYN 329
Query: 330 DIVKLVDTFPGQSI 343
IVK+ F G I
Sbjct: 330 TIVKMSHGFNGADI 343
>gi|255538752|ref|XP_002510441.1| 26S protease regulatory subunit S10b, putative [Ricinus communis]
gi|223551142|gb|EEF52628.1| 26S protease regulatory subunit S10b, putative [Ricinus communis]
Length = 399
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 229
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 230 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P + R+ + +GI + ++ E
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGDIDYE 335
Query: 330 DIVKLVDTFPGQSI 343
+VKL + F G +
Sbjct: 336 AVVKLAEGFNGADL 349
>gi|425899584|ref|ZP_18876175.1| ATPase, AAA family [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
gi|397890300|gb|EJL06782.1| ATPase, AAA family [Pseudomonas chlororaphis subsp. aureofaciens
30-84]
Length = 853
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 33/193 (17%)
Query: 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 219
L+LGI G GKS + + G + + + G L+ GE + IR R I+
Sbjct: 480 LLLGI---PGTGKSLAAKEIARLWGFSLVRLDMGALQDKWLGESERNIRSALR----IVD 532
Query: 220 KGKMCCLFINDLDAGAGRMGGTTQYTVN-NQMVNATLMNIADNPTNVQLPGMYNQEENPR 278
C L+I+++D G G+ ++T + Q VNATL+ + QE
Sbjct: 533 AMSPCILWIDEIDKGLGQ-----EHTHSAAQNVNATLLT-------------WLQESRAP 574
Query: 279 VPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNV-----PKEDI 331
++ T N F L L R GR + F+ P E R+ + N P + +
Sbjct: 575 AFVVATANRFGGLPPELTRAGRFDGRFFFGCPGSEGRLEILRIHLAARNCELSEAPLDTV 634
Query: 332 VKLVDTFPGQSID 344
+ L + F G ++
Sbjct: 635 ISLTEGFTGAELE 647
>gi|366989615|ref|XP_003674575.1| hypothetical protein NCAS_0B01150 [Naumovozyma castellii CBS 4309]
gi|342300439|emb|CCC68199.1| hypothetical protein NCAS_0B01150 [Naumovozyma castellii CBS 4309]
Length = 426
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 14/153 (9%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 201 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 259
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 260 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLS-----QMDGFDNLGQ 309
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
II+ N TL L+R GR+++ P
Sbjct: 310 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIP 339
>gi|387915818|gb|AFK11518.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6
[Callorhinchus milii]
Length = 389
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 84/181 (46%), Gaps = 20/181 (11%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 284 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E +VKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIELPNEQARLDILKIHAGPITKHGEIDYEAVVKLSDG 337
Query: 338 F 338
F
Sbjct: 338 F 338
>gi|225718662|gb|ACO15177.1| 26S protease regulatory subunit S10B [Caligus clemensi]
Length = 392
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 230
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + + G +V +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDVLG--------QVKMIM 280
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTREDR-----IGVCSG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P D+ + + +G I + + E +VKL D
Sbjct: 281 ATNRPDTLDPALLRPGRLDRKVEIPLPNDQARLEILKIHAGPITKHGGIDYEAVVKLSDG 340
Query: 338 FPGQSI 343
F G +
Sbjct: 341 FNGADL 346
>gi|357627263|gb|EHJ77001.1| 26S proteasome regulatory ATPase subunit 10B [Danaus plexippus]
Length = 373
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 156 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 211
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 212 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKIIM 261
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + S I + + E +VKL D
Sbjct: 262 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHASPIAKHGEMDYEAVVKLSDA 321
Query: 338 FPGQSI 343
F G +
Sbjct: 322 FNGADL 327
>gi|443316542|ref|ZP_21045982.1| AAA+ family ATPase [Leptolyngbya sp. PCC 6406]
gi|442783845|gb|ELR93745.1| AAA+ family ATPase [Leptolyngbya sp. PCC 6406]
Length = 510
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 89/201 (44%), Gaps = 28/201 (13%)
Query: 151 LNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 210
NLP + LI+GI +G GKS + + + + + + AG L GE K
Sbjct: 276 FNLPTPRGILIVGI---QGCGKSLAAKTIAREWSMPLLKLDAGRLYDKYIGESEK----N 328
Query: 211 YREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM 270
+R A + + L+I++++ G+ + ++ ++ + L
Sbjct: 329 FRRAVTLAETMAPAILWIDEIEKSMGQSDSDSDGGLSRRLFGSFLT-------------- 374
Query: 271 YNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS-GIFRTDNVP 327
+ QE++ V ++ T ND S + L+R GR ++ ++ P ++R+G+ + R P
Sbjct: 375 WLQEKSEEVFVVATANDLSRIPPELLRKGRFDEIFFVDLPDEQERVGILQIHLIRRKQDP 434
Query: 328 KE----DIVKLVDTFPGQSID 344
+ +V++ D + G I+
Sbjct: 435 RRFDLPTLVQVTDGYSGAEIE 455
>gi|68476913|ref|XP_717434.1| likely 26S proteasome regulatory particle ATPase Rpt4p [Candida
albicans SC5314]
gi|68477104|ref|XP_717345.1| likely 26S proteasome regulatory particle ATPase Rpt4p [Candida
albicans SC5314]
gi|46439054|gb|EAK98376.1| likely 26S proteasome regulatory particle ATPase Rpt4p [Candida
albicans SC5314]
gi|46439147|gb|EAK98468.1| likely 26S proteasome regulatory particle ATPase Rpt4p [Candida
albicans SC5314]
Length = 428
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 86/194 (44%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 203 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFAYA- 261
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 262 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 310
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P R+ + S + + E
Sbjct: 311 --QTKIIMATNRPDTLDPALLRAGRLDRKIEIGLPNEAGRLEIFKIHTSKVAKQGEFDFE 368
Query: 330 DIVKLVDTFPGQSI 343
VK+ D F G I
Sbjct: 369 AAVKMSDGFNGADI 382
>gi|224085722|ref|XP_002307679.1| predicted protein [Populus trichocarpa]
gi|222857128|gb|EEE94675.1| predicted protein [Populus trichocarpa]
Length = 402
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 173 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 232
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 233 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 278
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P + R+ + +GI + ++ E
Sbjct: 279 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGDIDYE 338
Query: 330 DIVKLVDTFPGQSI 343
+VKL + F G +
Sbjct: 339 AVVKLAEGFNGADL 352
>gi|403417831|emb|CCM04531.1| predicted protein [Fibroporia radiculosa]
Length = 399
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V A + N + + + + GE A+++R+ + A
Sbjct: 175 IKPPKGVLLYGPPGTGKTLLARAVAATLQTNFLKVVSSAIVDKYIGESARVVREMFGYA- 233
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 234 ---KEHEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 280
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSGIFRTD-NVPKE 329
R +I+ N TL L+R GR+++ P R + + + +G D + E
Sbjct: 281 LGRTKLIMATNRPDTLDPALMRPGRLDRKIEIPLPNEQARLEILKIHAGPVNKDKEIDYE 340
Query: 330 DIVKLVDTFPGQSI 343
IVKL D F G +
Sbjct: 341 SIVKLSDGFNGADL 354
>gi|448102530|ref|XP_004199824.1| Piso0_002370 [Millerozyma farinosa CBS 7064]
gi|359381246|emb|CCE81705.1| Piso0_002370 [Millerozyma farinosa CBS 7064]
Length = 415
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 118/297 (39%), Gaps = 58/297 (19%)
Query: 90 KGMVDTLFQAPMESGTHYAV----MSSYDYISQGLRQYSLD-NTLDGLYIAPAFMDKVVV 144
K + D F SG Y V D + G+R SLD TL + I P +D +V
Sbjct: 88 KSLDDERFIVKASSGPRYIVGCRNTIPKDKLKNGVR-VSLDMTTLTIMRILPREVDPLVY 146
Query: 145 HIT----------------------KNFLNLP----------NVKVPLILGIWGGKGQGK 172
++T + + LP +K P + ++G G GK
Sbjct: 147 NMTTFKPGEISFNGIGGLTEQIRELREVIELPLKNPELFTRIGIKAPKGVLLYGPPGTGK 206
Query: 173 SFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232
+ + V A +G N I A + GE A+LIR+ + A K+ + C +F++++D
Sbjct: 207 TLLAKAVAATIGANFIFSPASGIVDKYIGESARLIREMFAYA----KEHEPCIIFMDEID 262
Query: 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292
A GR ++ T ++ + TLM + + G + +I+ N TL
Sbjct: 263 AIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG--------QTKVIMATNRPDTLD 312
Query: 293 APLIRDGRMEKF--YWAPTREDRIGV----CSGIFRTDNVPKEDIVKLVDTFPGQSI 343
L+R GR+++ P R+ + + I + E VK+ D F G I
Sbjct: 313 PALMRAGRLDRKIEIALPNETGRLDIFKIHTAKIAKKGEFDFEAAVKMSDGFNGADI 369
>gi|448532164|ref|ZP_21621238.1| proteasome-activating nucleotidase [Halorubrum hochstenium ATCC
700873]
gi|445706780|gb|ELZ58654.1| proteasome-activating nucleotidase [Halorubrum hochstenium ATCC
700873]
Length = 405
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 14/148 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENQP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
LFI+++DA A + T T + V T+M + L M +E V II
Sbjct: 244 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEVRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
N F L ++R GR ++ P E
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVPKPE 321
>gi|149239116|ref|XP_001525434.1| 26S protease subunit RPT4 [Lodderomyces elongisporus NRRL YB-4239]
gi|146450927|gb|EDK45183.1| 26S protease subunit RPT4 [Lodderomyces elongisporus NRRL YB-4239]
Length = 434
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 14/153 (9%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 209 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARLIREMFAYA- 267
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 268 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 316
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
+ II+ N TL L+R GR+++ P
Sbjct: 317 --QTKIIMATNRPDTLDPALLRAGRLDRKIEIP 347
>gi|448494769|ref|ZP_21609584.1| proteasome-activating nucleotidase [Halorubrum californiensis DSM
19288]
gi|445688992|gb|ELZ41238.1| proteasome-activating nucleotidase [Halorubrum californiensis DSM
19288]
Length = 405
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 14/148 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENQP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
LFI+++DA A + T T + V T+M + L M +E V II
Sbjct: 244 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEVRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
N F L ++R GR ++ P E
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVPKPE 321
>gi|303389811|ref|XP_003073137.1| 26S proteasome regulatory subunit 10 [Encephalitozoon intestinalis
ATCC 50506]
gi|303302282|gb|ADM11777.1| 26S proteasome regulatory subunit 10 [Encephalitozoon intestinalis
ATCC 50506]
Length = 391
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 96/194 (49%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V+ P + ++G G GK+ +V A M +N + + + L GE +++IR+ + A
Sbjct: 166 VRAPKGVLLYGPPGTGKTLLARIVAATMDVNFLKVVSSALIEKYIGESSRMIREMFAYA- 224
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ C +F++++DA G+ + + + +++ V TLM + + QL G +N+ +
Sbjct: 225 ---KRKAPCIIFMDEIDAIGGKR--SRESSSSDREVQRTLMELLN-----QLDG-FNELD 273
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRT-DNVPKE 329
N V +I+ N L L+R GR+++ P R++ + + S + + + +
Sbjct: 274 N--VKVIMATNRPDILDPALLRPGRLDRKIEIPLPNEQGRKEVLKIHSKLMNAIEEIDYD 331
Query: 330 DIVKLVDTFPGQSI 343
+VKL F G +
Sbjct: 332 SLVKLTAGFNGADL 345
>gi|391332687|ref|XP_003740763.1| PREDICTED: 26S protease regulatory subunit 10B-like [Metaseiulus
occidentalis]
Length = 403
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V + M N + + + + GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASNMDSNFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 241
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + G +V II+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKIIM 291
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P R D + + I + ++ E +VKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDILKIHARSITKHGDIDWEAVVKLSDG 351
Query: 338 FPGQSI 343
F G +
Sbjct: 352 FNGADL 357
>gi|326519767|dbj|BAK00256.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 347
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 118 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKIVSSAIIDKYIGESARLIREMFGYAR 177
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 178 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 223
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P +R + + + +GI + + E
Sbjct: 224 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRTEVLKIHAAGIAKHGEIDYE 283
Query: 330 DIVKLVDTFPGQSI 343
+VKL + F G +
Sbjct: 284 AVVKLAEGFNGADL 297
>gi|193629665|ref|XP_001951431.1| PREDICTED: 26S protease regulatory subunit 10B-like [Acyrthosiphon
pisum]
Length = 395
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 178 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 233
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 234 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 283
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P R D + + + I + + E IVKL D
Sbjct: 284 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDILKIHAAPITKQGEIDYEAIVKLSDN 343
Query: 338 FPGQSI 343
F G +
Sbjct: 344 FNGADL 349
>gi|15219503|ref|NP_175120.1| AAA-type ATPase family protein [Arabidopsis thaliana]
gi|297846852|ref|XP_002891307.1| hypothetical protein ARALYDRAFT_891428 [Arabidopsis lyrata subsp.
lyrata]
gi|75336159|sp|Q9MAK9.1|PS10B_ARATH RecName: Full=26S protease regulatory subunit S10B homolog B;
AltName: Full=26S proteasome AAA-ATPase subunit RPT4b;
AltName: Full=26S proteasome subunit S10B homolog B;
AltName: Full=Regulatory particle triple-A ATPase
subunit 4b
gi|7767657|gb|AAF69154.1|AC007915_6 F27F5.8 [Arabidopsis thaliana]
gi|17065266|gb|AAL32787.1| similar to 26S proteasome AAA-ATPase subunit RPT4a [Arabidopsis
thaliana]
gi|21387177|gb|AAM47992.1| 26S proteasome AAA-ATPase subunit RPT4a-like protein [Arabidopsis
thaliana]
gi|297337149|gb|EFH67566.1| hypothetical protein ARALYDRAFT_891428 [Arabidopsis lyrata subsp.
lyrata]
gi|332193951|gb|AEE32072.1| AAA-type ATPase family protein [Arabidopsis thaliana]
Length = 399
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 228
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P + R+ + SGI + + E
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYE 335
Query: 330 DIVKLVDTFPGQSI 343
IVKL + F G +
Sbjct: 336 AIVKLGEGFNGADL 349
>gi|383622082|ref|ZP_09948488.1| proteasome-activating nucleotidase [Halobiforma lacisalsi AJ5]
gi|448698594|ref|ZP_21699061.1| proteasome-activating nucleotidase [Halobiforma lacisalsi AJ5]
gi|445780702|gb|EMA31579.1| proteasome-activating nucleotidase [Halobiforma lacisalsi AJ5]
Length = 405
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|327310719|ref|YP_004337616.1| AAA ATPase [Thermoproteus uzoniensis 768-20]
gi|326947198|gb|AEA12304.1| AAA family ATPase, possible cell division control protein cdc48
[Thermoproteus uzoniensis 768-20]
Length = 730
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 89/207 (42%), Gaps = 28/207 (13%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + G N I + E+ S GE K+IR+ +++A +
Sbjct: 492 LFGPPGTGKTLLAKAVATESGANFIAVRGPEIFSKWVGESEKMIREIFQKA----RMAAP 547
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +FI+++DA A G V+ ++V L ++ G+ E V +I
Sbjct: 548 CVVFIDEIDALASARGLGADSFVSERVVAQLL---------AEMDGIRTLEN---VVVIG 595
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP------KEDIVKLVDT 337
N + L+R GR ++ + P + R + + T NVP E++ + +
Sbjct: 596 ATNRPDLVDPALLRPGRFDRIIYVPPPDFRARLDIFLIHTRNVPLAKDVDLEELARRTEG 655
Query: 338 FPGQSIDF------FGALRARVYDDEV 358
+ G I+ F ALR + EV
Sbjct: 656 YSGADIELVVREATFMALREDINAKEV 682
>gi|224062085|ref|XP_002300747.1| predicted protein [Populus trichocarpa]
gi|118483383|gb|ABK93592.1| unknown [Populus trichocarpa]
gi|222842473|gb|EEE80020.1| predicted protein [Populus trichocarpa]
Length = 402
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 173 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 232
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 233 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 278
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P + R+ + +GI + ++ E
Sbjct: 279 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGDIDYE 338
Query: 330 DIVKLVDTFPGQSI 343
+VKL + F G +
Sbjct: 339 AVVKLAEGFNGADL 352
>gi|354545862|emb|CCE42591.1| hypothetical protein CPAR2_202340 [Candida parapsilosis]
Length = 434
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 14/153 (9%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 209 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARLIREMFAYA- 267
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 268 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 316
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
+ II+ N TL L+R GR+++ P
Sbjct: 317 --QTKIIMATNRPDTLDPALLRAGRLDRKIEIP 347
>gi|448434482|ref|ZP_21586282.1| proteasome-activating nucleotidase [Halorubrum tebenquichense DSM
14210]
gi|445685110|gb|ELZ37471.1| proteasome-activating nucleotidase [Halorubrum tebenquichense DSM
14210]
Length = 405
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 14/148 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENQP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
LFI+++DA A + T T + V T+M + L M +E V II
Sbjct: 244 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEVRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
N F L ++R GR ++ P E
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVPKPE 321
>gi|195036578|ref|XP_001989747.1| GH18966 [Drosophila grimshawi]
gi|193893943|gb|EDV92809.1| GH18966 [Drosophila grimshawi]
Length = 398
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + ++M N + + + + GE A+LIR+ + A D +
Sbjct: 181 LYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 236
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T +++ + TLM + + G +V II+
Sbjct: 237 CIIFMDEIDAIGGRR--FSEGTSSDREIQRTLMELLNQMDGFDALG--------QVKIIM 286
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + + + + + E +VKL D
Sbjct: 287 ATNRPDTLDPALLRPGRLDRKLEIPLPNEIARLEILKIHAAPLAKRGEIDYEAVVKLSDL 346
Query: 338 FPGQSI 343
F G +
Sbjct: 347 FNGADL 352
>gi|118486132|gb|ABK94909.1| unknown [Populus trichocarpa]
Length = 399
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 229
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 230 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P + R+ + +GI + ++ E
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGDIDYE 335
Query: 330 DIVKLVDTFPGQSI 343
+VKL + F G +
Sbjct: 336 AVVKLAEGFNGADL 349
>gi|323307308|gb|EGA60588.1| Rpt4p [Saccharomyces cerevisiae FostersO]
Length = 374
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 14/153 (9%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 320
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
II+ N TL L+R GR+++ P
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIP 350
>gi|224080385|ref|XP_002306121.1| predicted protein [Populus trichocarpa]
gi|222849085|gb|EEE86632.1| predicted protein [Populus trichocarpa]
Length = 399
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 229
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 230 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P + R+ + +GI + ++ E
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGDIDYE 335
Query: 330 DIVKLVDTFPGQSI 343
+VKL + F G +
Sbjct: 336 AVVKLAEGFNGADL 349
>gi|413954589|gb|AFW87238.1| hypothetical protein ZEAMMB73_492879 [Zea mays]
Length = 447
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 92/191 (48%), Gaps = 20/191 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 218 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 276
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 277 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 323
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P + R+ V +GI + + E
Sbjct: 324 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQGRMEVLKIHAAGIAKHGEIDYE 383
Query: 330 DIVKLVDTFPG 340
+VKL + F G
Sbjct: 384 AVVKLAEGFNG 394
>gi|448482363|ref|ZP_21605484.1| proteasome-activating nucleotidase [Halorubrum arcis JCM 13916]
gi|445821427|gb|EMA71219.1| proteasome-activating nucleotidase [Halorubrum arcis JCM 13916]
Length = 405
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 14/148 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENQP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
LFI+++DA A + T T + V T+M + L M +E V II
Sbjct: 244 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEVRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
N F L ++R GR ++ P E
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVPKPE 321
>gi|365762926|gb|EHN04458.1| Rpt4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 379
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 74/153 (48%), Gaps = 14/153 (9%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 320
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
II+ N TL L+R GR+++ P
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIP 350
>gi|357467393|ref|XP_003603981.1| 26S proteasome regulatory ATPase subunit S10b [Medicago truncatula]
gi|355493029|gb|AES74232.1| 26S proteasome regulatory ATPase subunit S10b [Medicago truncatula]
Length = 402
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE ++LIR+ + A
Sbjct: 173 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESSRLIREMFGYAR 232
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 233 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 278
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+V II+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 279 LGKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 338
Query: 330 DIVKLVDTFPGQSI 343
+VKL + F G +
Sbjct: 339 AVVKLAEGFNGADL 352
>gi|433638161|ref|YP_007283921.1| 26S proteasome subunit P45 family [Halovivax ruber XH-70]
gi|433289965|gb|AGB15788.1| 26S proteasome subunit P45 family [Halovivax ruber XH-70]
Length = 404
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V K I M+ EL GE AKL+R + ++ ++ +
Sbjct: 187 LYGPPGTGKTMLAKAVANKTDATFIKMAGSELVHKFIGEGAKLVRDLF----EVAREHEP 242
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
LFI+++DA A + T T + V T+M + L M E+ + II
Sbjct: 243 AVLFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGDIRIIA 292
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 293 ATNRFDMLDRAILRPGRFDRLIEVP 317
>gi|356502624|ref|XP_003520118.1| PREDICTED: cell division control protein 48 homolog B-like [Glycine
max]
Length = 606
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 15/181 (8%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P L ++G G GK+ V + G + ++S + +AGE +++R+ + EA+
Sbjct: 45 LKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTVISPHSVHRAHAGESERILREAFSEAS 104
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ GK +FI+++DA R + V TLM+ ++ PT
Sbjct: 105 SHVALGKPSVIFIDEIDALCARRDSKREQDVRVASQLFTLMD-SNKPTF----------S 153
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRM--EKFYWAPTREDRIGVCSGIFRTDNVPKEDIVK 333
P V ++ + N + L R GR E P +DR + T +P + ++
Sbjct: 154 TPGVVVVASTNRVDAIDPALRRSGRFDAEIEVTVPNEDDRFQILK--LYTKMIPLDPVLD 211
Query: 334 L 334
L
Sbjct: 212 L 212
>gi|336477840|ref|YP_004616981.1| AAA ATPase [Methanosalsum zhilinae DSM 4017]
gi|335931221|gb|AEH61762.1| AAA family ATPase, CDC48 subfamily [Methanosalsum zhilinae DSM
4017]
Length = 740
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 81/182 (44%), Gaps = 21/182 (11%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V + N I + ++ S GE K IR+ +++A
Sbjct: 494 IKPPKGILLFGPPGTGKTLIAQAVANESNANFISIKGPQMLSKWVGESEKAIREMFKKAR 553
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQ-YTVNNQMVNATLMNIADNPTNVQLPGMYNQE 274
+ C +F +++D+ A G TT+ V ++VN L +L G+ +
Sbjct: 554 QV----SPCIIFFDEIDSIAAVRGATTEGGKVAERVVNQLL---------TELDGLETLK 600
Query: 275 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTDNVPKEDIV 332
E + +I N + L+R GR ++ AP R RI + N+P ED V
Sbjct: 601 E---IVVIAATNRPDIMDPALLRAGRFDRMVLVGAPNRSGRINIFK--IHAKNIPLEDDV 655
Query: 333 KL 334
L
Sbjct: 656 NL 657
>gi|448427600|ref|ZP_21583915.1| proteasome-activating nucleotidase [Halorubrum terrestre JCM 10247]
gi|445678287|gb|ELZ30781.1| proteasome-activating nucleotidase [Halorubrum terrestre JCM 10247]
Length = 405
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 14/148 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENQP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
LFI+++DA A + T T + V T+M + L M +E V II
Sbjct: 244 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEVRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
N F L ++R GR ++ P E
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVPKPE 321
>gi|448374252|ref|ZP_21558137.1| proteasome-activating nucleotidase [Halovivax asiaticus JCM 14624]
gi|445660929|gb|ELZ13724.1| proteasome-activating nucleotidase [Halovivax asiaticus JCM 14624]
Length = 404
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V K I M+ EL GE AKL+R + ++ ++ +
Sbjct: 187 LYGPPGTGKTMLAKAVANKTDATFIKMAGSELVHKFIGEGAKLVRDLF----EVAREHEP 242
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
LFI+++DA A + T T + V T+M + L M E+ + II
Sbjct: 243 AVLFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGDIRIIA 292
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 293 ATNRFDMLDRAILRPGRFDRLIEVP 317
>gi|254573476|ref|XP_002493847.1| Putative ATPase of the AAA family [Komagataella pastoris GS115]
gi|238033646|emb|CAY71668.1| Putative ATPase of the AAA family [Komagataella pastoris GS115]
gi|328354331|emb|CCA40728.1| Uncharacterized AAA domain-containing protein C16E9.10c
[Komagataella pastoris CBS 7435]
Length = 818
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 132/313 (42%), Gaps = 46/313 (14%)
Query: 37 SLKKVSSKVSQQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTL 96
++K++ S +SQ++ K F + + Y+EEKQ + + I+D +++T + L
Sbjct: 418 AIKRIFSTLSQEQ--EKKF-IEAMYEEEKQ--DEDTMDIDEGITDKTRELTHLSTIQKFL 472
Query: 97 FQAPME-SGTHYAVMS-SYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNL- 153
+ P + A +S +Y+ L +G P K V ++K + L
Sbjct: 473 LKHPHPLTEEQLAPLSITYEDFITALPTIQPTAKREGFATVPDVTWKSVGALSKTRVELH 532
Query: 154 ----PNVKVPLI---LGI--------WGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 198
+K P I +GI WG G GK+ + V + N I + EL +
Sbjct: 533 MAIVQPIKRPEIYEKVGITAPAGVLMWGPPGCGKTLLAKAVANESKANFISIKGPELLNK 592
Query: 199 NAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 258
GE K IRQ + A I C +F ++LDA R + + ++++VN L
Sbjct: 593 YVGESEKAIRQVFSRARASIP----CVIFFDELDALVPRRDASLSES-SSRVVNTLL--- 644
Query: 259 ADNPTNVQLPGMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWA--PTREDRI 314
+L G+ N R I V G N + ++R GR++K + PT ++R+
Sbjct: 645 ------TELDGL-----NDRKGIFVIGATNRPDMIDPAMLRPGRLDKTLYIELPTADERL 693
Query: 315 GVCSGIFRTDNVP 327
+ + R + P
Sbjct: 694 EIMKTVIRVNGTP 706
>gi|387592229|gb|EIJ87253.1| ATPase [Nematocida parisii ERTm3]
gi|387597428|gb|EIJ95048.1| ATPase [Nematocida parisii ERTm1]
Length = 389
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 76/153 (49%), Gaps = 14/153 (9%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V P + ++G G GK+ V A + N + + + + GE +++IR+ + A
Sbjct: 164 VSAPKGVLLYGPPGTGKTLLARAVAATLDSNFLKVVSSAIIEKYIGESSRMIREMFTYA- 222
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA G+ +++ T +++ V TLM + + Q+ G EE
Sbjct: 223 ---KENQPCVIFLDEIDAIGGKR--SSESTSSDREVQRTLMELLN-----QMDGF---EE 269
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
RV +I+ N L L+R GR+++ P
Sbjct: 270 LGRVKVIMATNRPDILDPALLRPGRLDRKIEIP 302
>gi|339234579|ref|XP_003378844.1| 26S protease regulatory subunit S10B [Trichinella spiralis]
gi|316978544|gb|EFV61519.1| 26S protease regulatory subunit S10B [Trichinella spiralis]
Length = 452
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A++IR+ + A D +
Sbjct: 179 LYGPPGTGKTLLARAVASQLECNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 234
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + G +V II+
Sbjct: 235 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------KVKIIM 284
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P R D I + + I + + E +VKL D
Sbjct: 285 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDIIKIHAKPITKKGIIDFESVVKLSDG 344
Query: 338 FPGQSI 343
F G +
Sbjct: 345 FSGADL 350
>gi|241958488|ref|XP_002421963.1| 26S protease subunit, putative [Candida dubliniensis CD36]
gi|223645308|emb|CAX39964.1| 26S protease subunit, putative [Candida dubliniensis CD36]
Length = 429
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 204 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFAYA- 262
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 263 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 311
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEK 303
+ II+ N TL L+R GR+++
Sbjct: 312 --QTKIIMATNRPDTLDPALLRAGRLDR 337
>gi|448497864|ref|ZP_21610607.1| proteasome-activating nucleotidase [Halorubrum coriense DSM 10284]
gi|445699417|gb|ELZ51446.1| proteasome-activating nucleotidase [Halorubrum coriense DSM 10284]
Length = 405
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 14/148 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENQP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
LFI+++DA A + T T + V T+M + L M +E V II
Sbjct: 244 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEVRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
N F L ++R GR ++ P E
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVPKPE 321
>gi|1526426|dbj|BAA11338.1| proteasome subunit p42 [Homo sapiens]
Length = 389
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV + +
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMTM 277
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 338 FPGQSI 343
F G +
Sbjct: 338 FNGADL 343
>gi|409081325|gb|EKM81684.1| hypothetical protein AGABI1DRAFT_111952 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 399
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V A + N + + + + GE A+++R+ + A
Sbjct: 175 IKPPKGVLLYGPPGTGKTLLARAVAATLQTNFLKVVSSAIVDKYIGESARVVREMFGYAR 234
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 235 D----HEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 280
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
R +I+ N TL L+R GR+++ P + R+ + + + + E
Sbjct: 281 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEVPLPNEQARLEILKIHAKPVNKASEIDYE 340
Query: 330 DIVKLVDTFPGQSI 343
IVKL D+F G +
Sbjct: 341 AIVKLSDSFNGADL 354
>gi|332158940|ref|YP_004424219.1| cell division control protein [Pyrococcus sp. NA2]
gi|331034403|gb|AEC52215.1| cell division control protein [Pyrococcus sp. NA2]
Length = 840
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 72/164 (43%), Gaps = 16/164 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 586 LYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKA----RQAAP 641
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A G T V ++++N L ++ G+ EN V +I
Sbjct: 642 AIIFIDEIDAIAPARGTTEGERVTDRIINQLL---------TEMDGLV---ENSGVVVIA 689
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP 327
N L L+R GR ++ P ++R T N+P
Sbjct: 690 ATNRPDILDPALLRPGRFDRLILVPAPDERARFEIFKVHTRNMP 733
>gi|281344564|gb|EFB20148.1| hypothetical protein PANDA_019466 [Ailuropoda melanoleuca]
Length = 389
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESACLIREMFNYARD----HQP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 338 FPGQSI 343
F G +
Sbjct: 338 FNGADL 343
>gi|426196558|gb|EKV46486.1| 26S proteasome regulatory complex ATPase RPT4 [Agaricus bisporus
var. bisporus H97]
Length = 399
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V A + N + + + + GE A+++R+ + A
Sbjct: 175 IKPPKGVLLYGPPGTGKTLLARAVAATLQTNFLKVVSSAIVDKYIGESARVVREMFGYAR 234
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 235 D----HEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 280
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
R +I+ N TL L+R GR+++ P + R+ + + + + E
Sbjct: 281 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEVPLPNEQARLEILKIHAKPVNKASEIDYE 340
Query: 330 DIVKLVDTFPGQSI 343
IVKL D+F G +
Sbjct: 341 AIVKLSDSFNGADL 354
>gi|389592578|ref|XP_003721730.1| putative 26S protease regulatory subunit [Leishmania major strain
Friedlin]
gi|321438263|emb|CBZ12016.1| putative 26S protease regulatory subunit [Leishmania major strain
Friedlin]
Length = 396
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 94/187 (50%), Gaps = 23/187 (12%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + + A + + + A + GE A++IR+ + A ++ +
Sbjct: 179 LYGPPGTGKTLLAKAIAANVDAAFLKIVASSIVDKYIGESARVIREMFAYA----REHEP 234
Query: 224 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282
C +FI+++DA G+ R+ G++ +++ + TLM + + Q+ G ++ +V +I
Sbjct: 235 CIIFIDEVDAIGSKRIEGSS----SDREIQRTLMELLN-----QMDGF---DKLGKVKVI 282
Query: 283 VTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSG-IFRTDNVPKEDIVKLVD 336
+ N TL A L+R GR+++ P R D + + S I + ++ E +VKL +
Sbjct: 283 MATNRPDTLDAALMRPGRLDRKIEIPLPNEAGRLDVLRIHSAKITKKGDIDFESVVKLSE 342
Query: 337 TFPGQSI 343
F G +
Sbjct: 343 GFNGADL 349
>gi|225458173|ref|XP_002281107.1| PREDICTED: 26S protease regulatory subunit S10B homolog B [Vitis
vinifera]
gi|147800891|emb|CAN75568.1| hypothetical protein VITISV_010255 [Vitis vinifera]
gi|302142551|emb|CBI19754.3| unnamed protein product [Vitis vinifera]
Length = 398
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 228
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 334
Query: 330 DIVKLVDTFPGQSI 343
+VKL + F G +
Sbjct: 335 AVVKLAEGFNGADL 348
>gi|313238058|emb|CBY13177.1| unnamed protein product [Oikopleura dioica]
Length = 389
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + G +V +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKMIM 277
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSGIFRTD-NVPKEDIVKLVDT 337
N L L+R GR+++ P R D + + S T + E IVKL DT
Sbjct: 278 ATNRPDVLDPALLRPGRLDRKIEIPLPNEQARLDIMKIHSRPLATHGEIDYEAIVKLSDT 337
Query: 338 FPGQSI 343
F G +
Sbjct: 338 FNGADL 343
>gi|301787789|ref|XP_002929310.1| PREDICTED: 26S protease regulatory subunit 10B-like [Ailuropoda
melanoleuca]
Length = 403
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESACLIREMFNYARD----HQP 241
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 291
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 351
Query: 338 FPGQSI 343
F G +
Sbjct: 352 FNGADL 357
>gi|195442534|ref|XP_002069009.1| GK12331 [Drosophila willistoni]
gi|194165094|gb|EDW79995.1| GK12331 [Drosophila willistoni]
Length = 403
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ +N + + + + GE A+ IR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDVNFLKIVSSAIVDKYIGESARQIREMFAYARD----HQP 241
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + G +V II+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKIIM 291
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P R D + + + + + ++ E IVKL D
Sbjct: 292 ATNRPDTLDPALLRPGRLDRKLEIPLPNETARMDILKIHAAPLAKEGDIDYEAIVKLSDR 351
Query: 338 FPGQSI 343
F G +
Sbjct: 352 FNGADL 357
>gi|448719557|ref|ZP_21703127.1| proteasome-activating nucleotidase [Halobiforma nitratireducens JCM
10879]
gi|445783258|gb|EMA34092.1| proteasome-activating nucleotidase [Halobiforma nitratireducens JCM
10879]
Length = 405
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|402223610|gb|EJU03674.1| 26S proteasome subunit P45 [Dacryopinax sp. DJM-731 SS1]
Length = 399
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V A M N + + + + GE A+L+R+ + A
Sbjct: 175 IKPPKGVLLYGPPGTGKTLLARAVAATMSTNFLKVVSSAIVDKYIGESARLVREMFGYA- 233
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 234 ---REHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 280
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
R +I+ N TL L+R GR+++ P + R+ + +G+ + + +
Sbjct: 281 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHAAGVNKGGEIDFD 340
Query: 330 DIVKLVDTFPGQSI 343
+VKL D F G +
Sbjct: 341 AVVKLSDGFNGADL 354
>gi|224105337|ref|XP_002313775.1| predicted protein [Populus trichocarpa]
gi|222850183|gb|EEE87730.1| predicted protein [Populus trichocarpa]
Length = 392
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 163 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 222
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 223 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 268
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P + R+ + +GI + ++ E
Sbjct: 269 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGDIDYE 328
Query: 330 DIVKLVDTFPGQSI 343
+VKL + F G +
Sbjct: 329 AVVKLAEGFNGADL 342
>gi|148907029|gb|ABR16658.1| unknown [Picea sitchensis]
Length = 398
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIEANFLKVVSSAIIDKYIGESARLIREMFGYAR 228
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P + R+ V +GI + ++ E
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEVLKIHAAGIAKHGDIDYE 334
Query: 330 DIVKLVDTFPGQSI 343
+VKL + F G +
Sbjct: 335 AVVKLAEGFNGADL 348
>gi|333910254|ref|YP_004483987.1| ATPase AAA [Methanotorris igneus Kol 5]
gi|333750843|gb|AEF95922.1| AAA family ATPase, CDC48 subfamily [Methanotorris igneus Kol 5]
Length = 732
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 78/179 (43%), Gaps = 16/179 (8%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
++ P + ++G G GK+ + V + N I + E+ S GE K IR+ +R+A
Sbjct: 483 IRPPRGVLLFGPPGTGKTLLAKAVANESEANFISVKGPEIFSKWVGESEKAIREIFRKA- 541
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ C +F +++D+ A R G V ++VN L +L G+ EE
Sbjct: 542 ---RQTAPCIIFFDEIDSIAPRRGSGHDSGVTEKVVNQLL---------TELDGL---EE 586
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKL 334
V +I N L L+R GR+++ P + + + T +P D V L
Sbjct: 587 PKDVVVIAATNRPDILDPALLRPGRLDRIVLVPAPDKKARLAIFKVHTRKMPLADDVDL 645
>gi|452823572|gb|EME30581.1| AAA-type ATPase [Galdieria sulphuraria]
Length = 699
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 7/165 (4%)
Query: 144 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 203
+H + F L + P + ++G G GK+ + + + G N I + EL + GE
Sbjct: 443 IHHPERFEAL-GLSRPAGVLLYGPPGCGKTLLAKAIARESGANFISIKGPELLNKYVGES 501
Query: 204 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 263
+ +R+ ++ + C +F ++LDA A R GG YT + +++ ++
Sbjct: 502 ERAVRRVFQRG----RASAPCIIFFDELDALAPRRGGFASYTDSESFGSSS--GASERVV 555
Query: 264 NVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
N L + E +V +I N + ++R GR++K + P
Sbjct: 556 NQLLTELDGVEARSQVFVIAATNRPDMIDPAMLRPGRLDKLLFVP 600
>gi|302389778|ref|YP_003825599.1| Vesicle-fusing ATPase [Thermosediminibacter oceani DSM 16646]
gi|302200406|gb|ADL07976.1| Vesicle-fusing ATPase [Thermosediminibacter oceani DSM 16646]
Length = 495
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 91/207 (43%), Gaps = 18/207 (8%)
Query: 148 KNFLNLPNVKVPLILGIW--GGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAK 205
KN+ + + + + GI G G GK+ + + + I S E AG A+
Sbjct: 83 KNYDEVKQMGIRPLRGILLTGAPGTGKTLLAKAASSYIDSAFISASGSEFIEMYAGVGAQ 142
Query: 206 LIRQRYREAADIIKKG--KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 263
+RQ ++ A D+ +K K C +FI++++ AG G T + +Q +N L
Sbjct: 143 RVRQLFKTARDLARKNSKKHCVIFIDEIEVIAGVRGKNTSHMEYDQTLNQLL-------- 194
Query: 264 NVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIF 321
V++ G+ ++++ + +I N L ++R GR ++ P +E R +
Sbjct: 195 -VEMDGLSAKDDDVNILVIGATNRPDILDPAIMRPGRFDRIVKVDLPDKEGRYQILK--L 251
Query: 322 RTDNVPKEDIVKLVDTFPGQSIDFFGA 348
T + P D V L + ++ F GA
Sbjct: 252 HTKDKPLADDVNL-EQIARETFGFSGA 277
>gi|448305307|ref|ZP_21495239.1| proteasome-activating nucleotidase [Natronorubrum sulfidifaciens
JCM 14089]
gi|445589154|gb|ELY43390.1| proteasome-activating nucleotidase [Natronorubrum sulfidifaciens
JCM 14089]
Length = 405
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|448306329|ref|ZP_21496237.1| proteasome-activating nucleotidase [Natronorubrum bangense JCM
10635]
gi|445598388|gb|ELY52447.1| proteasome-activating nucleotidase [Natronorubrum bangense JCM
10635]
Length = 405
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|443475164|ref|ZP_21065122.1| AAA ATPase central domain protein [Pseudanabaena biceps PCC 7429]
gi|443020015|gb|ELS34024.1| AAA ATPase central domain protein [Pseudanabaena biceps PCC 7429]
Length = 549
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 87/201 (43%), Gaps = 30/201 (14%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-MSAGELESGNAGEPAKLIRQRY 211
LPN + L+LGI +G GKS C A + P++ + G L G+ R
Sbjct: 260 LPNPRGVLLLGI---QGTGKSL-CAKAIANLWRLPLLRLDVGRLFGSLVGQSES----RT 311
Query: 212 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 271
R+ + + C L+I+++D G + + + +Q V TL+ +
Sbjct: 312 RQTIQLAEALAPCILWIDEIDKAFGGIANSVGDSGTSQRVLGTLLT-------------W 358
Query: 272 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVC---SGIFRTDNV 326
QE++ V ++ T N+ L L+R GR ++ ++ PT E+R + FR +
Sbjct: 359 MQEKSSPVFVVATANNIHALPPELLRKGRFDELFFINLPTYEERKEIFLLHLKRFRPTEL 418
Query: 327 PKEDIVKLV---DTFPGQSID 344
P DI ++ F G I+
Sbjct: 419 PSFDIERMAAISKEFSGAEIE 439
>gi|403216832|emb|CCK71328.1| hypothetical protein KNAG_0G02720 [Kazachstania naganishii CBS
8797]
Length = 444
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 89/196 (45%), Gaps = 24/196 (12%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 219 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 277
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 278 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLS-----QMDGFDNLGQ 327
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPK----- 328
II+ N TL L+R GR+++ P R+ + T NV K
Sbjct: 328 ---TKIIMATNRPDTLDPALLRPGRLDRKIEINLPNEAGRLEIFK--IHTANVKKHGEFD 382
Query: 329 -EDIVKLVDTFPGQSI 343
+ VK+ D F G I
Sbjct: 383 FDAAVKMSDGFNGADI 398
>gi|260944346|ref|XP_002616471.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238850120|gb|EEQ39584.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 427
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 24/196 (12%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 202 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFSYA- 260
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 261 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 309
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPK----- 328
+ +I+ N TL L+R GR+++ P R+ V T V K
Sbjct: 310 --QTKVIMATNRPDTLDPALLRAGRLDRKIEIGLPNEAGRLEVFK--IHTAKVAKQGEFD 365
Query: 329 -EDIVKLVDTFPGQSI 343
E VK+ D F G I
Sbjct: 366 FEAAVKMSDGFNGADI 381
>gi|401414449|ref|XP_003871722.1| putative 26S protease regulatory subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322487941|emb|CBZ23187.1| putative 26S protease regulatory subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 396
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 94/187 (50%), Gaps = 23/187 (12%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + + A + + + A + GE A++IR+ + A ++ +
Sbjct: 179 LYGPPGTGKTLLAKAIAANVDAAFLKIVASSIVDKYIGESARVIREMFAYA----REHEP 234
Query: 224 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282
C +FI+++DA G+ R+ G++ +++ + TLM + + Q+ G ++ +V +I
Sbjct: 235 CIIFIDEVDAIGSKRIEGSS----SDREIQRTLMELLN-----QMDGF---DKLGKVKVI 282
Query: 283 VTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSG-IFRTDNVPKEDIVKLVD 336
+ N TL A L+R GR+++ P R D + + S I + ++ E +VKL +
Sbjct: 283 MATNRPDTLDAALMRPGRLDRKIEIPLPNESGRLDILRIHSAKITKKGDIDFESVVKLSE 342
Query: 337 TFPGQSI 343
F G +
Sbjct: 343 GFNGADL 349
>gi|358058571|dbj|GAA95534.1| hypothetical protein E5Q_02189 [Mixia osmundae IAM 14324]
Length = 432
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 90/186 (48%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + MG+N + + + + GE ++L+R+ + A K+ +
Sbjct: 214 LYGPPGTGKTLLAKAVASTMGVNFLKVVSSAIVDKYIGESSRLVREMFAYA----KEHEP 269
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + R +I+
Sbjct: 270 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGRTKVIM 319
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P R + I + + ++ + + +VKL +
Sbjct: 320 ATNRPDTLDPALLRPGRLDRKIEIPLPNEIARTEIIKIHAQNVQKSGEIDYDPVVKLSEG 379
Query: 338 FPGQSI 343
F G +
Sbjct: 380 FNGADL 385
>gi|254412421|ref|ZP_05026195.1| ATPase, AAA family protein [Coleofasciculus chthonoplastes PCC
7420]
gi|196180731|gb|EDX75721.1| ATPase, AAA family protein [Coleofasciculus chthonoplastes PCC
7420]
Length = 532
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 75/164 (45%), Gaps = 23/164 (14%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
+PN K L++GI +G GKS + + + + + + G L G GE +RQ +
Sbjct: 267 IPNPKGILLVGI---QGTGKSLSAKTIAHEWRLPLLRLDTGRLFGGIVGESESRVRQMIQ 323
Query: 213 EAADIIKKGKMCCLFINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 271
+ I C L+I+++D G +G G + ++ V TL+ +
Sbjct: 324 ISEAIAP----CVLWIDEIDKAFGNIGAGVDGDSGTSRRVFGTLIT-------------W 366
Query: 272 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 313
QE+ V I+ T N+ L A L+R GR ++ ++ PT +R
Sbjct: 367 MQEKTSPVFIVATANNVQILPAELLRKGRFDEIFFLNLPTEAER 410
>gi|448525868|ref|XP_003869223.1| Rpt4 26S proteasome regulatory subunit [Candida orthopsilosis Co
90-125]
gi|380353576|emb|CCG23087.1| Rpt4 26S proteasome regulatory subunit [Candida orthopsilosis]
Length = 435
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 14/153 (9%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 210 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARLIREMFAYA- 268
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 269 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 317
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
+ II+ N TL L+R GR+++ P
Sbjct: 318 --QTKIIMATNRPDTLDPALLRAGRLDRKIEIP 348
>gi|84996219|ref|XP_952831.1| 26S proteasome ATPase subunit [Theileria annulata strain Ankara]
gi|65303829|emb|CAI76206.1| 26S proteasome ATPase subunit, putative [Theileria annulata]
Length = 448
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 22/239 (9%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + +G N + + A + GE AK+IR+ + A
Sbjct: 223 IKPPKGVLLYGPPGTGKTLLARALANDLGCNFLKVVASAVVDKYIGESAKIIREMFGYAK 282
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +FI+++DA GR +Q T ++ + TLM + L G +E
Sbjct: 283 D----NQPCIIFIDEIDAIGGRR--FSQGTSADREIQRTLMELL-----THLDGF---DE 328
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCSGIFRTDNVP----KE 329
+V II+ N L L+R GR+++ P + RI + + N+
Sbjct: 329 LGQVKIIMATNRPDVLDPALLRPGRIDRKIEIPLPNETARIEILKIHTQKLNIQYPINYN 388
Query: 330 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSK--EGPPTFEQ 386
+I KL D F G + +R +I E + ++L +K EG ++EQ
Sbjct: 389 NICKLCDGFNGADMRNICTEAGINAIRNMRDYIIEEDFFKAARKLTENKKLEGTLSYEQ 447
>gi|255538750|ref|XP_002510440.1| 26S protease regulatory subunit S10b, putative [Ricinus communis]
gi|223551141|gb|EEF52627.1| 26S protease regulatory subunit S10b, putative [Ricinus communis]
Length = 399
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 229
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 230 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 335
Query: 330 DIVKLVDTFPGQSI 343
+VKL + F G +
Sbjct: 336 AVVKLAEGFNGADL 349
>gi|307151949|ref|YP_003887333.1| AAA ATPase [Cyanothece sp. PCC 7822]
gi|306982177|gb|ADN14058.1| AAA ATPase central domain protein [Cyanothece sp. PCC 7822]
Length = 504
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 99/235 (42%), Gaps = 47/235 (20%)
Query: 125 LDNTLDGLYI-APAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM 183
LDN D L AF D+ + LP+ + L++GI +G GKS + +
Sbjct: 233 LDNLKDWLLRRGGAFSDRARAY------GLPHPRGLLLVGI---QGTGKSLTAKAISHHW 283
Query: 184 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM----- 238
+ + + G L G GE R R+ ++ + C L+I+++D +
Sbjct: 284 HLPLLRLDVGRLFGGLVGES----ESRTRQMINLAEALAPCVLWIDEIDKAFAGVDGKGD 339
Query: 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 298
GGTT V T +N + E+ V ++ T N+ + L ++R
Sbjct: 340 GGTTS------RVFGTFIN-------------WLAEKKSPVFVVATANNIAALPPEMLRK 380
Query: 299 GRMEKFYWA--PTREDRIGVCS---GIFRTDNVPKEDIVKLVDTFPGQSIDFFGA 348
GR ++ ++ PT+E+R+ + S R N+ + DI +L P DF GA
Sbjct: 381 GRFDEIFFVGLPTQEERVAIFSVHLSRLRPHNLKQYDINRLAYETP----DFSGA 431
>gi|356510074|ref|XP_003523765.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
isoform 1 [Glycine max]
gi|356518571|ref|XP_003527952.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
isoform 1 [Glycine max]
Length = 398
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 228
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 334
Query: 330 DIVKLVDTFPGQSI 343
+VKL + F G +
Sbjct: 335 AVVKLAEGFNGADL 348
>gi|449515756|ref|XP_004164914.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
[Cucumis sativus]
Length = 398
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 228
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 334
Query: 330 DIVKLVDTFPGQSI 343
+VKL + F G +
Sbjct: 335 AVVKLAEGFNGADL 348
>gi|449469945|ref|XP_004152679.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
[Cucumis sativus]
Length = 398
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 228
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 334
Query: 330 DIVKLVDTFPGQSI 343
+VKL + F G +
Sbjct: 335 AVVKLAEGFNGADL 348
>gi|448457064|ref|ZP_21595638.1| proteasome-activating nucleotidase [Halorubrum lipolyticum DSM
21995]
gi|445811151|gb|EMA61161.1| proteasome-activating nucleotidase [Halorubrum lipolyticum DSM
21995]
Length = 405
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENQP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
LFI+++DA A + T T + V T+M + L M +E V II
Sbjct: 244 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEVRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVP 318
>gi|198415591|ref|XP_002129627.1| PREDICTED: similar to GJ15827 [Ciona intestinalis]
Length = 388
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 171 LYGPPGTGKTLLARAVSSQLDANFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 226
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + G +V +I+
Sbjct: 227 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG--------QVKMIM 276
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + + I + + E +VKL D
Sbjct: 277 ATNRPDTLDPALLRPGRLDRKIRIDLPNEQGRMDILKIHAAPITKHGEIDYEAVVKLSDQ 336
Query: 338 FPGQSI 343
F G +
Sbjct: 337 FNGADL 342
>gi|341583068|ref|YP_004763560.1| cell division protein CDC48 [Thermococcus sp. 4557]
gi|340810726|gb|AEK73883.1| cell division protein CDC48 [Thermococcus sp. 4557]
Length = 795
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 17/171 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 555 LYGPPGTGKTLLAKAVANESEANFIAIKGPEVLSKWVGESEKNIREIFRKA----RQAAP 610
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A R G + V ++++N L M +EN V +I
Sbjct: 611 TVIFIDEIDAIAPRRGTDVNH-VTDRLINQLLTE------------MDGIQENSGVVVIA 657
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKL 334
N + L+R GR ++ P +++ + T NVP + V+L
Sbjct: 658 ATNRPDIIDPALLRPGRFDRLILVPAPDEKARLEIFKVHTRNVPLAEDVRL 708
>gi|428780056|ref|YP_007171842.1| AAA ATPase [Dactylococcopsis salina PCC 8305]
gi|428694335|gb|AFZ50485.1| AAA+ family ATPase [Dactylococcopsis salina PCC 8305]
Length = 610
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 91/218 (41%), Gaps = 40/218 (18%)
Query: 136 PAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 195
P +++K+ + TK L + G G GK+ + + +G+N I + E+
Sbjct: 109 PQWLEKLGLDATKGVL------------LVGPPGTGKTLTAKALAQSLGVNYIALVGSEI 156
Query: 196 ESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGA---GRMGGTTQYTVNNQMVN 252
S GE +R + +AA K C LFI++LD A ++ G + V Q
Sbjct: 157 MSKYYGEAEARMRGMFEKAA----KNAPCILFIDELDTIAPDRAKVEGEVEKRVVGQ--- 209
Query: 253 ATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTR 310
L+++ D TN P V I+ N + L L R GR ++ + P R
Sbjct: 210 --LLSLMDGFTN-----------TPGVVILGATNRPNHLDPALRRPGRFDREVVFGVPDR 256
Query: 311 EDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGA 348
DR + + T +P E+ V L D ++ F GA
Sbjct: 257 GDRAAILRVL--TAKMPLEETVDL-DEIASLAVGFVGA 291
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 17/147 (11%)
Query: 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 216
K P + +WG G GK+ + + ++ G N I + EL + G + +R+ + +A
Sbjct: 389 KAPRGVLLWGEPGTGKTLLAKALASQAGANFISIKGAELLNRWVGASEEAVREVFSKARQ 448
Query: 217 IIKKGKMCCLFINDLDAGAGRMGG-TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ C LFI+++D A G V++++V L I GM + E
Sbjct: 449 VAP----CVLFIDEIDTLAPARGSYQGDSGVSDRVVGQLLTEI---------DGMVDGGE 495
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRME 302
+ ++ N + L L+R GR +
Sbjct: 496 ---LLVVAATNRYQALDPALLRSGRFD 519
>gi|63054416|ref|NP_587809.2| 19S proteasome regulatory subunit Rpt4 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|46397658|sp|O74445.2|PRS10_SCHPO RecName: Full=Probable 26S protease subunit rpt4
gi|157310490|emb|CAA20682.2| 19S proteasome regulatory subunit Rpt4 (predicted)
[Schizosaccharomyces pombe]
Length = 388
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V A +G+N + + + + GE A++IR+ + A
Sbjct: 163 IKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYA- 221
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 222 ---KEHEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 270
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
+ II+ N TL L+R GR+++ P
Sbjct: 271 --QTKIIMATNRPDTLDPALLRPGRLDRKIEIP 301
>gi|326432763|gb|EGD78333.1| hypothetical protein PTSG_09399 [Salpingoeca sp. ATCC 50818]
Length = 864
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 16/150 (10%)
Query: 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 216
K P +L ++G G GK+ + + N I + EL + GE + +RQ + A
Sbjct: 605 KPPGVL-LYGPPGCGKTLLAKALANSCNANFISIKGPELMNKFVGESERAVRQLFTRA-- 661
Query: 217 IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 276
K C +F ++LDA R G + V+ ++VN L V+L G + EE
Sbjct: 662 --KTSSPCVVFFDELDALCPRRGDASSSRVSERIVNQLL---------VELDGFDSGEE- 709
Query: 277 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 306
++ +I N + ++R GR+EK +
Sbjct: 710 -KIFVIGATNRIDIIDPAMLRPGRLEKLVY 738
>gi|255713900|ref|XP_002553232.1| KLTH0D11990p [Lachancea thermotolerans]
gi|238934612|emb|CAR22794.1| KLTH0D11990p [Lachancea thermotolerans CBS 6340]
Length = 433
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 73/148 (49%), Gaps = 14/148 (9%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 208 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 266
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 267 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 316
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEK 303
II+ N TL L+R GR+++
Sbjct: 317 ---TKIIMATNRPDTLDPALLRPGRLDR 341
>gi|339896797|ref|XP_003392195.1| putative 26S protease regulatory subunit [Leishmania infantum
JPCM5]
gi|398009636|ref|XP_003858017.1| 26S protease regulatory subunit, putative [Leishmania donovani]
gi|321398878|emb|CBZ08327.1| putative 26S protease regulatory subunit [Leishmania infantum
JPCM5]
gi|322496221|emb|CBZ31293.1| 26S protease regulatory subunit, putative [Leishmania donovani]
Length = 396
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 94/187 (50%), Gaps = 23/187 (12%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + + A + + + A + GE A++IR+ + A ++ +
Sbjct: 179 LYGPPGTGKTLLAKAIAANVDAAFLKIVASSIVDKYIGESARVIREMFAYA----REHEP 234
Query: 224 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282
C +FI+++DA G+ R+ G++ +++ + TLM + + Q+ G ++ +V +I
Sbjct: 235 CIIFIDEVDAIGSKRIEGSS----SDREIQRTLMELLN-----QMDGF---DKLGKVKVI 282
Query: 283 VTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSG-IFRTDNVPKEDIVKLVD 336
+ N TL A L+R GR+++ P R D + + S I + ++ E +VKL +
Sbjct: 283 MATNRPDTLDAALMRPGRLDRKIEIPLPNEAGRLDILRIHSAKITKKGDIDFESVVKLSE 342
Query: 337 TFPGQSI 343
F G +
Sbjct: 343 GFNGADL 349
>gi|312373685|gb|EFR21384.1| hypothetical protein AND_17121 [Anopheles darlingi]
Length = 392
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 230
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 280
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + + I + ++ E +VKL D
Sbjct: 281 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPIAKHGDIDYEAVVKLSDN 340
Query: 338 FPGQSI 343
F G +
Sbjct: 341 FNGADL 346
>gi|154331635|ref|XP_001561635.1| putative 26S protease regulatory subunit [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134058954|emb|CAM36781.1| putative 26S protease regulatory subunit [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 396
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 90/187 (48%), Gaps = 23/187 (12%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + + A + + + A + GE A++IR+ + A ++ +
Sbjct: 179 LYGPPGTGKTLLAKAIAANVDAAFLKIVASSIVDKYIGESARVIREMFAYA----REHEP 234
Query: 224 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282
C +FI+++DA G+ R+ G++ +++ + TLM + + G +V +I
Sbjct: 235 CIIFIDEVDAIGSKRIEGSS----SDREIQRTLMELLNQMDGFDTLG--------KVKVI 282
Query: 283 VTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSG-IFRTDNVPKEDIVKLVD 336
+ N TL A L+R GR+++ P R D + + S I + ++ E +VKL +
Sbjct: 283 MATNRPDTLDAALMRPGRLDRKIEIPLPNEAGRLDILRIHSAKIAKQGDIDFESVVKLSE 342
Query: 337 TFPGQSI 343
F G +
Sbjct: 343 GFNGADL 349
>gi|70941981|ref|XP_741212.1| 26S proteasome regulatory subunit 7 [Plasmodium chabaudi chabaudi]
gi|56519448|emb|CAH83988.1| 26S proteasome regulatory subunit 7, putative [Plasmodium chabaudi
chabaudi]
Length = 295
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + + I + EL GE A+L+R+ ++ A K K
Sbjct: 76 LYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARLVRELFQMA----KSKKA 131
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C LFI+++DA G G + + + V T++ I + QL G N+ + +I+
Sbjct: 132 CILFIDEVDAIGGSRGDESAH--GDHEVQRTMLEIVN-----QLDGFDNRGN---IKVIM 181
Query: 284 TGNDFSTLYAPLIRDGRMEK 303
N TL + L+R GR+++
Sbjct: 182 ATNRPDTLDSALVRPGRIDR 201
>gi|225428386|ref|XP_002283544.1| PREDICTED: 26S protease regulatory subunit S10B homolog B isoform 1
[Vitis vinifera]
gi|297744432|emb|CBI37694.3| unnamed protein product [Vitis vinifera]
Length = 399
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 229
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 230 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 335
Query: 330 DIVKLVDTFPGQSI 343
+VKL + F G +
Sbjct: 336 AVVKLAEGFNGADL 349
>gi|257387828|ref|YP_003177601.1| ATPase AAA [Halomicrobium mukohataei DSM 12286]
gi|257170135|gb|ACV47894.1| AAA family ATPase, CDC48 subfamily [Halomicrobium mukohataei DSM
12286]
Length = 740
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 87/205 (42%), Gaps = 29/205 (14%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETDANFISVRGPQLLSKWVGESEKAIRQTFRKARQVAP---- 556
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+F ++LD+ A GG T V+ ++VN L +L G+ EE V +I
Sbjct: 557 TVIFFDELDSLAPGRGGETGSNVSERVVNQLL---------TELDGLEEMEE---VMVIG 604
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP------KEDIVKLV 335
N + LIR GR ++ P E R + TD+ P ++ ++
Sbjct: 605 ATNRPDMIDPALIRSGRFDRLVMVGEPGIEGREQILK--IHTDDTPLSPDVSLRELAEMT 662
Query: 336 DTFPGQSIDFFG---ALRARVYDDE 357
D + G ++ G A+ A DD+
Sbjct: 663 DGYVGSDLESIGREAAIEALREDDD 687
>gi|195108917|ref|XP_001999039.1| GI23296 [Drosophila mojavensis]
gi|193915633|gb|EDW14500.1| GI23296 [Drosophila mojavensis]
Length = 393
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + +++ N + + + + GE A+LIR+ + A D +
Sbjct: 176 LYGPPGTGKTLLARAIASQLDANFLKVVSSAIVDKYIGESARLIREMFSYARD----HQP 231
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + G +V II+
Sbjct: 232 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKIIM 281
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P R D + + + + + + E +VKL D
Sbjct: 282 ATNRPDTLDPALLRPGRLDRKLEIPLPNEIARLDILKIHAAPLAKQGEIDYEAVVKLSDM 341
Query: 338 FPGQSI 343
F G +
Sbjct: 342 FNGADL 347
>gi|448476346|ref|ZP_21603510.1| proteasome-activating nucleotidase [Halorubrum aidingense JCM
13560]
gi|445815895|gb|EMA65814.1| proteasome-activating nucleotidase [Halorubrum aidingense JCM
13560]
Length = 405
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENQP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
LFI+++DA A + T T + V T+M + L M +E V II
Sbjct: 244 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEVRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVP 318
>gi|448738116|ref|ZP_21720147.1| proteasome-activating nucleotidase [Halococcus thailandensis JCM
13552]
gi|445802700|gb|EMA53004.1| proteasome-activating nucleotidase [Halococcus thailandensis JCM
13552]
Length = 405
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 84/195 (43%), Gaps = 20/195 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
++ P + + G G GK+ + V + I M+ EL GE A+L+R +
Sbjct: 182 IEPPTGVLLHGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGARLVRDLF---- 237
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ + + +FI+++DA A + T T + V T+M + L M E+
Sbjct: 238 ELASEHEPAVIFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFED 287
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCS-GIFRTDNVPKE 329
+ II N F L ++R GR ++ P RE + + G+ D+V +
Sbjct: 288 RGDISIIAATNRFDMLDRAILRPGRFDRLIEVPKPGPDGREKIFAIHTRGMNLADDVEFD 347
Query: 330 DIVKLVDTFPGQSID 344
++ + D F G I+
Sbjct: 348 ELATMADEFSGAEIE 362
>gi|256374585|ref|YP_003098245.1| Microtubule-severing ATPase [Actinosynnema mirum DSM 43827]
gi|255918888|gb|ACU34399.1| Microtubule-severing ATPase [Actinosynnema mirum DSM 43827]
Length = 734
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 105/248 (42%), Gaps = 30/248 (12%)
Query: 110 MSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVV--VHITKNFLNLPNVKVPLILGIWGG 167
MS+ D + G +LD+ D + A + + + +F L V+ P L ++G
Sbjct: 458 MSTSDTLRTG--GLTLDDVGDMAEVKQALTEAALWPLQYPDSFARL-GVEPPRGLLLYGP 514
Query: 168 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227
G GK+F + +N + + EL GE + +R+ +R AA+ +F
Sbjct: 515 PGCGKTFLVRALAGTGKLNVLSVKGAELMDKFVGESERAVRELFRRAAE----AAPALVF 570
Query: 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 287
++++DA A R G ++ V +++V A L + + E R I++ +
Sbjct: 571 LDEVDALAPRRGQSSDSGVADRVVAALLTEL-------------DGVEPLRDVIVLGATN 617
Query: 288 FSTLYAP-LIRDGRMEKFYWAPT--REDRIGVCSGIFRTDNVP-KEDI--VKLVDTFPGQ 341
L P L+R GR+E+ + P E R+ + R N P ED+ L D G
Sbjct: 618 RPELVDPALLRPGRLERLVYVPPPDAEARVEILRSASR--NTPLAEDVELTALADDLDGY 675
Query: 342 SIDFFGAL 349
S AL
Sbjct: 676 SAADCAAL 683
>gi|227827953|ref|YP_002829733.1| ATPase AAA [Sulfolobus islandicus M.14.25]
gi|229585220|ref|YP_002843722.1| AAA ATPase [Sulfolobus islandicus M.16.27]
gi|238620179|ref|YP_002915005.1| ATPase AAA [Sulfolobus islandicus M.16.4]
gi|385773657|ref|YP_005646223.1| AAA ATPase [Sulfolobus islandicus HVE10/4]
gi|385776292|ref|YP_005648860.1| AAA ATPase [Sulfolobus islandicus REY15A]
gi|227459749|gb|ACP38435.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.14.25]
gi|228020270|gb|ACP55677.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.27]
gi|238381249|gb|ACR42337.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus M.16.4]
gi|323475040|gb|ADX85646.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus REY15A]
gi|323477771|gb|ADX83009.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus HVE10/4]
Length = 759
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 93/212 (43%), Gaps = 28/212 (13%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
++ P + ++G G GK+ + V + G N I + E+ S GE K +R+ +R A
Sbjct: 497 IRPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAVREIFRRA- 555
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ C +F +++D+ A G T V ++VN L ++ G+ +
Sbjct: 556 ---RQTAPCVIFFDEIDSIAPMRGFTHDSGVTERIVNQLLS---------EMDGIQSLN- 602
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCSGIFRT----DNVPKE 329
RV +I N L L+R GR ++ + P ++ RI + +T +V E
Sbjct: 603 --RVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDEKARIEILKIYTKTLPIDSSVNLE 660
Query: 330 DIVKLVDTFPGQSIDFFG------ALRARVYD 355
++ K ++ + G I+ LR + Y+
Sbjct: 661 ELAKKLEGYTGADIEALARETTMKVLRQKYYE 692
>gi|147920787|ref|YP_685407.1| cell division cycle protein 48 [Methanocella arvoryzae MRE50]
gi|110620803|emb|CAJ36081.1| cell division cycle protein 48 [Methanocella arvoryzae MRE50]
Length = 743
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 83/184 (45%), Gaps = 23/184 (12%)
Query: 148 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 207
K F ++ ++ P + ++G G GK+ V + N I + EL S GE K +
Sbjct: 487 KKFKDM-GIRPPKGIVLYGPPGTGKTLLARAVAGESEANFINIRGPELLSKWVGESEKAV 545
Query: 208 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQ--YTVNNQMVNATLMNIADNPTNV 265
R+ +R+A + +F ++LDA A GG + V+ ++VN L
Sbjct: 546 RETFRKARQV----SPSIIFFDELDALAPARGGGGEDGSRVSERVVNQIL---------T 592
Query: 266 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRT 323
+L G+ E V +I N + L+R GR ++ + AP++E RIG+ T
Sbjct: 593 ELDGLVELEG---VVVIGASNRPDIIDPALLRPGRFDRLVYVGAPSKEGRIGILK--IHT 647
Query: 324 DNVP 327
N+P
Sbjct: 648 RNMP 651
>gi|68076831|ref|XP_680335.1| 26S proteasome regulatory subunit 7 [Plasmodium berghei strain
ANKA]
gi|56501247|emb|CAH95167.1| 26S proteasome regulatory subunit 7, putative [Plasmodium berghei]
Length = 420
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + + I + EL GE A+L+R+ ++ A K K
Sbjct: 201 LYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARLVRELFQMA----KSKKA 256
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C LFI+++DA G G + + + V T++ I + QL G N+ + +I+
Sbjct: 257 CILFIDEVDAIGGSRGDESAH--GDHEVQRTMLEIVN-----QLDGFDNRGN---IKVIM 306
Query: 284 TGNDFSTLYAPLIRDGRMEK 303
N TL + L+R GR+++
Sbjct: 307 ATNRPDTLDSALVRPGRIDR 326
>gi|448444786|ref|ZP_21590012.1| proteasome-activating nucleotidase [Halorubrum saccharovorum DSM
1137]
gi|445685754|gb|ELZ38100.1| proteasome-activating nucleotidase [Halorubrum saccharovorum DSM
1137]
Length = 405
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENQP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
LFI+++DA A + T T + V T+M + L M +E V II
Sbjct: 244 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEVRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVP 318
>gi|227830675|ref|YP_002832455.1| AAA ATPase [Sulfolobus islandicus L.S.2.15]
gi|229579582|ref|YP_002837981.1| AAA ATPase [Sulfolobus islandicus Y.G.57.14]
gi|284998202|ref|YP_003419969.1| ATPase AAA [Sulfolobus islandicus L.D.8.5]
gi|227457123|gb|ACP35810.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.S.2.15]
gi|228010297|gb|ACP46059.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
Y.G.57.14]
gi|284446097|gb|ADB87599.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus L.D.8.5]
Length = 759
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 94/212 (44%), Gaps = 28/212 (13%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
++ P + ++G G GK+ + V + G N I + E+ S GE K +R+ +R A
Sbjct: 497 IRPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAVREIFRRA- 555
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ C +F +++D+ A G T V ++VN L ++ G+ Q
Sbjct: 556 ---RQTAPCVIFFDEIDSIAPMRGFTHDSGVTERIVNQLLS---------EMDGI--QSL 601
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCSGIFRT----DNVPKE 329
N RV +I N L L+R GR ++ + P ++ RI + +T +V E
Sbjct: 602 N-RVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDEKARIEILKIYTKTLPIDSSVNLE 660
Query: 330 DIVKLVDTFPGQSIDFFG------ALRARVYD 355
++ K ++ + G I+ LR + Y+
Sbjct: 661 ELAKKLEGYTGADIEALARETTMKVLRQKYYE 692
>gi|347965832|ref|XP_321726.5| AGAP001407-PA [Anopheles gambiae str. PEST]
gi|333470333|gb|EAA01092.5| AGAP001407-PA [Anopheles gambiae str. PEST]
Length = 392
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 230
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 280
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + + I + ++ E +VKL D
Sbjct: 281 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPIAKHGDIDYEAVVKLSDN 340
Query: 338 FPGQSI 343
F G +
Sbjct: 341 FNGADL 346
>gi|229581753|ref|YP_002840152.1| AAA ATPase [Sulfolobus islandicus Y.N.15.51]
gi|228012469|gb|ACP48230.1| AAA family ATPase, CDC48 subfamily [Sulfolobus islandicus
Y.N.15.51]
Length = 759
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 93/212 (43%), Gaps = 28/212 (13%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
++ P + ++G G GK+ + V + G N I + E+ S GE K +R+ +R A
Sbjct: 497 IRPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAVREIFRRA- 555
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ C +F +++D+ A G T V ++VN L ++ G+ +
Sbjct: 556 ---RQTAPCVIFFDEIDSIAPMRGFTHDSGVTERIVNQLLS---------EMDGIQSLN- 602
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCSGIFRT----DNVPKE 329
RV +I N L L+R GR ++ + P ++ RI + +T +V E
Sbjct: 603 --RVVVIAATNRPDILDPALLRPGRFDRLIYVPPPDEKARIEILKIYTKTLPIDSSVNLE 660
Query: 330 DIVKLVDTFPGQSIDFFG------ALRARVYD 355
++ K ++ + G I+ LR + Y+
Sbjct: 661 ELAKKLEGYTGADIEALARETTMKVLRQKYYE 692
>gi|229085940|ref|ZP_04218164.1| AAA ATPase central domain protein [Bacillus cereus Rock3-44]
gi|228697376|gb|EEL50137.1| AAA ATPase central domain protein [Bacillus cereus Rock3-44]
Length = 311
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 83/195 (42%), Gaps = 31/195 (15%)
Query: 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 221
L +G G GK+F V ++ N I + + S GE K + + + EA ++
Sbjct: 68 LLFYGPPGCGKTFLARAVAGEIDANFIHLELQAILSMWTGESEKNLHEIFEEA----RRT 123
Query: 222 KMCCLFINDLDAGAG---RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 278
K C LFI++LDA G +MG Q T+ NQ++ V++ G + N
Sbjct: 124 KPCILFIDELDAFGGNRQKMGSHHQRTLVNQLL-------------VEMDG--SNSFNEG 168
Query: 279 VPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKED-----I 331
V II N + L R GR F PT E+R+ + +T + PK + +
Sbjct: 169 VYIIGATNTPWYIDPALRRPGRFNSLVFVAPPTYEERLTILD--LKTKDKPKAELQLDMV 226
Query: 332 VKLVDTFPGQSIDFF 346
K + F G + +
Sbjct: 227 AKYAEHFSGADLTYL 241
>gi|418461396|ref|ZP_13032471.1| AAA+ family ATPase [Saccharomonospora azurea SZMC 14600]
gi|359738499|gb|EHK87384.1| AAA+ family ATPase [Saccharomonospora azurea SZMC 14600]
Length = 741
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 89/202 (44%), Gaps = 23/202 (11%)
Query: 110 MSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVV--VHITKNFLNLPNVKVPLILGIWGG 167
MS+ D ++ G +LD+ D + + + V+ + +F L V P + I+G
Sbjct: 467 MSTTDTLATG--GLTLDDVGDMAEVKQSLTETVLWPLRYPDSFARL-GVAPPRGVLIYGP 523
Query: 168 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227
G GK+F + +N + EL GE + +R+ +R AA+ +F
Sbjct: 524 PGNGKTFLVRALAGTGALNVFSVKGAELMDKWVGESERAVRELFRRAAE----AAPSLIF 579
Query: 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 287
++++DA A R G ++ ++++V A L + + E R ++V +
Sbjct: 580 LDEVDALAPRRGQSSDSGASDRVVAALLTEL-------------DGVEPLRDVVVVGATN 626
Query: 288 FSTLYAP-LIRDGRMEKFYWAP 308
L P L+R GR+E+ + P
Sbjct: 627 RPELVDPALLRPGRLERLVYVP 648
>gi|229173917|ref|ZP_04301455.1| AAA ATPase central domain protein [Bacillus cereus MM3]
gi|228609555|gb|EEK66839.1| AAA ATPase central domain protein [Bacillus cereus MM3]
Length = 331
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 83/195 (42%), Gaps = 31/195 (15%)
Query: 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 221
L +G G GK+F V ++ N I + + S +GE K + + + EA +K
Sbjct: 88 LLFYGPPGCGKTFLARAVAGEINANFIHLELQAILSMWSGEAEKNLHEVFEEA----RKT 143
Query: 222 KMCCLFINDLDAGAG---RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 278
K C LFI++LDA G +MG Q T+ NQ++ V++ G + N
Sbjct: 144 KPCILFIDELDAYGGNRQKMGAHHQRTLVNQLL-------------VEMDG--SNSFNEG 188
Query: 279 VPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKED-----I 331
V II N + L R GR F P E+R+ + +T + P+ + +
Sbjct: 189 VYIIGATNTPWYIDPALRRPGRFNSLVFVAPPNNEERLTILE--LKTKDKPRMELQLDFV 246
Query: 332 VKLVDTFPGQSIDFF 346
K D F G + +
Sbjct: 247 SKYADHFSGADLTYL 261
>gi|345872617|ref|ZP_08824548.1| AAA ATPase central domain protein [Thiorhodococcus drewsii AZ1]
gi|343918280|gb|EGV29046.1| AAA ATPase central domain protein [Thiorhodococcus drewsii AZ1]
Length = 504
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 68/147 (46%), Gaps = 23/147 (15%)
Query: 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 219
L+LG+ GG GKS + V ++G+ + + G L GE K +R+ E AD++
Sbjct: 268 LLLGVQGG---GKSLAAKAVAGRLGVPLLRLDFGALYDKYIGETEKNLRKAL-ETADLMS 323
Query: 220 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 279
C L+I++++ G G+ V +++ L +A E RV
Sbjct: 324 P---CVLWIDEIEKGIA--TGSEDEGVGRRVLGTLLTWMA--------------ERKSRV 364
Query: 280 PIIVTGNDFSTLYAPLIRDGRMEKFYW 306
+ T ND S L LIR GR+++ ++
Sbjct: 365 FLAATANDISRLPPELIRKGRIDELFF 391
>gi|268323248|emb|CBH36836.1| conserved hypothetical protein, AAA ATPase family and CDC48 family
[uncultured archaeon]
Length = 739
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 88/201 (43%), Gaps = 22/201 (10%)
Query: 149 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 208
+ +L N K P + ++G G GK+ + V + N I + EL S GE K +R
Sbjct: 484 DVFSLLNTKPPKGVLLFGPPGTGKTMLVKAVANESDANFISIKGPELLSKWVGESEKAVR 543
Query: 209 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 268
+ +R+A K+ C +F++++D+ A V ++V+ L
Sbjct: 544 EIFRKA----KQSAPCIIFLDEIDSIAPIRSAGLDSHVTERVVSQILTE----------- 588
Query: 269 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFR 322
M EE V II N + L+R GR+++ + +PT+E R + +G
Sbjct: 589 -MDGLEELKDVMIIAATNRPDIIDPALLRPGRLDRLIYIQSPTKEAREAIFKVHLAGKPL 647
Query: 323 TDNVPKEDIVKLVDTFPGQSI 343
+V E++ K+ + + G I
Sbjct: 648 GADVSIEELAKMTEGYVGADI 668
>gi|448467063|ref|ZP_21599341.1| proteasome-activating nucleotidase [Halorubrum kocurii JCM 14978]
gi|445812995|gb|EMA62979.1| proteasome-activating nucleotidase [Halorubrum kocurii JCM 14978]
Length = 404
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 187 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENQP 242
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
LFI+++DA A + T T + V T+M + L M +E V II
Sbjct: 243 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEVRIIA 292
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 293 ATNRFDMLDPAILRPGRFDRLIEVP 317
>gi|297791633|ref|XP_002863701.1| regulatory particle triple-a 4A [Arabidopsis lyrata subsp. lyrata]
gi|297309536|gb|EFH39960.1| regulatory particle triple-a 4A [Arabidopsis lyrata subsp. lyrata]
Length = 400
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 90/188 (47%), Gaps = 20/188 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKCVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 228
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ + C +F++++DA GR ++ T ++ + TLM + + QL G N
Sbjct: 229 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGFDNL-- 276
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P +R D + + +GI + + E
Sbjct: 277 -GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYE 335
Query: 330 DIVKLVDT 337
IVKL +
Sbjct: 336 AIVKLAEV 343
>gi|195432950|ref|XP_002064478.1| GK23803 [Drosophila willistoni]
gi|194160563|gb|EDW75464.1| GK23803 [Drosophila willistoni]
Length = 397
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P E R+ + I + + E IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEEARLEILKIHALIIAKHGEIDYEAIVKLSDN 345
Query: 338 FPGQSI 343
F G +
Sbjct: 346 FNGADL 351
>gi|429190866|ref|YP_007176544.1| 26S proteasome subunit P45 family [Natronobacterium gregoryi SP2]
gi|448327130|ref|ZP_21516466.1| proteasome-activating nucleotidase [Natronobacterium gregoryi SP2]
gi|429135084|gb|AFZ72095.1| 26S proteasome subunit P45 family [Natronobacterium gregoryi SP2]
gi|445609063|gb|ELY62875.1| proteasome-activating nucleotidase [Natronobacterium gregoryi SP2]
Length = 405
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----EVAREHEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|353242842|emb|CCA74450.1| probable RPT4-26S proteasome regulatory subunit [Piriformospora
indica DSM 11827]
Length = 389
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 89/186 (47%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V + + N + + + + GE A+LIR+ + A ++ +
Sbjct: 172 LYGPPGTGKTLLARAVASTLQTNFLKVVSSAIVDKYIGESARLIREMFGYA----REHEP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGRVKLIM 277
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + + ++ ++ E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEILKIHARSVNKSGDIDYEAIVKLSDG 337
Query: 338 FPGQSI 343
F G +
Sbjct: 338 FNGADL 343
>gi|409730008|ref|ZP_11271619.1| proteasome-activating nucleotidase [Halococcus hamelinensis 100A6]
gi|448722313|ref|ZP_21704851.1| proteasome-activating nucleotidase [Halococcus hamelinensis 100A6]
gi|445790024|gb|EMA40697.1| proteasome-activating nucleotidase [Halococcus hamelinensis 100A6]
Length = 405
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 84/195 (43%), Gaps = 20/195 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
++ P + + G G GK+ + V + I M+ EL GE A+L+R +
Sbjct: 182 IEPPTGVLLHGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGARLVRDLF---- 237
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ + + +FI+++DA A + T T + V T+M + L M EE
Sbjct: 238 ELASEHEPAVIFIDEIDAVAAKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFEE 287
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCS-GIFRTDNVPKE 329
V II N + L ++R GR ++ P RE + + G+ D+V E
Sbjct: 288 RGDVSIIAATNRYDMLDRAILRPGRFDRLIEVPKPDIEGREQIFAIHTRGMNLADDVDFE 347
Query: 330 DIVKLVDTFPGQSID 344
+ ++ + F G I+
Sbjct: 348 ALAEMAEEFSGAEIE 362
>gi|254585551|ref|XP_002498343.1| ZYRO0G08008p [Zygosaccharomyces rouxii]
gi|238941237|emb|CAR29410.1| ZYRO0G08008p [Zygosaccharomyces rouxii]
Length = 826
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 23/183 (12%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+ P + +WG G GK+ + V + N I + EL + GE + IRQ + A
Sbjct: 547 ISAPAGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFTRA- 605
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ C +F ++LDA R T + ++++VN L +L G+
Sbjct: 606 ---RASVPCVIFFDELDALVPRRDSTLSES-SSRVVNTLL---------TELDGL----- 647
Query: 276 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKEDI 331
N R I V G N + ++R GR++K F P E+++ + + RT+ P
Sbjct: 648 NDRRGIFVVGATNRPDMIDPAMLRPGRLDKTLFIELPNAEEKLDILKTLVRTNGTPMSSD 707
Query: 332 VKL 334
V L
Sbjct: 708 VDL 710
Score = 44.7 bits (104), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 23/198 (11%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V+ P + + G G GK+ + ++ + + +SA + SG +GE K IR + EA
Sbjct: 223 VEPPRGVLLHGPPGCGKTSIANALAGELQVPFLSISAPSVVSGMSGESEKKIRDLFDEAR 282
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ C +F +++DA + G Q + ++V A L+ D N E+
Sbjct: 283 SLAP----CLMFFDEIDAITPKRDGGAQREMERRIV-AQLLTSMDE---------LNMEK 328
Query: 276 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTDNVPKE-D 330
P+IV G N +L A L R GR ++ P R+ + + + + E D
Sbjct: 329 TGGKPVIVIGATNRPDSLDAALRRAGRFDREICLNVPNELSRVHILKKLAQNLKIDGEID 388
Query: 331 IVKLVDTFPGQSIDFFGA 348
+KL PG F GA
Sbjct: 389 FIKLAKLTPG----FVGA 402
>gi|29825445|gb|AAO92283.1| 26S proteasome regulatory subunit [Dermacentor variabilis]
Length = 402
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 185 LYGPPGTGKTLLARAVASQIEANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 240
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 241 CVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKIIM 290
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P R D + + + I + V E +VKL D
Sbjct: 291 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDIVKIHATPITKHGEVDWEAVVKLSDG 350
Query: 338 FPGQSI 343
F G +
Sbjct: 351 FNGADL 356
>gi|359484119|ref|XP_002267202.2| PREDICTED: cell division control protein 48 homolog B-like [Vitis
vinifera]
Length = 605
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 12/163 (7%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P L ++G G GK+ V + G + +S + +AGE +++R+ + EA+
Sbjct: 47 LKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTTISPHTVHRAHAGESERILREAFSEAS 106
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
GK +FI+++DA R + + TLM+ ++ P + +
Sbjct: 107 SHAVSGKPSVIFIDEIDALCPRRSSRREQDIRLASQLFTLMD-SNKPLSASV-------- 157
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRM--EKFYWAPTREDRIGV 316
P+V ++ + N + L R GR E PT E+R +
Sbjct: 158 -PQVVVVASTNRVDAIDPALRRSGRFDAEVEVTTPTEEERFQI 199
>gi|346472533|gb|AEO36111.1| hypothetical protein [Amblyomma maculatum]
Length = 361
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 144 LYGPPGTGKTLLARAVASQIEANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 199
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 200 CVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKIIM 249
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P R D + + + I + V E +VKL D
Sbjct: 250 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDIVKIHAAPITKHGEVDWEAVVKLSDG 309
Query: 338 FPGQSI 343
F G +
Sbjct: 310 FNGADL 315
>gi|226371786|gb|ACO51518.1| LP16188p [Drosophila melanogaster]
Length = 406
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 189 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 244
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 245 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 294
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 295 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 354
Query: 338 FPGQSI 343
F G +
Sbjct: 355 FNGADL 360
>gi|242008303|ref|XP_002424946.1| 26S protease regulatory subunit S10B, putative [Pediculus humanus
corporis]
gi|212508560|gb|EEB12208.1| 26S protease regulatory subunit S10B, putative [Pediculus humanus
corporis]
Length = 395
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 178 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 233
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 234 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKIIM 283
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 284 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAMPITKHGEIDYEAIVKLSDG 343
Query: 338 FPGQSI 343
F G +
Sbjct: 344 FNGADL 349
>gi|440493762|gb|ELQ76191.1| 26S proteasome regulatory complex, ATPase RPT4 [Trachipleistophora
hominis]
Length = 324
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 75/149 (50%), Gaps = 14/149 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + A M ++ + + A L GE +++IR+ ++ A ++
Sbjct: 107 LYGPPGTGKTLLARAIAATMDVSFLKVVASSLIEKYIGESSRMIREMFQYA----RERTP 162
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +FI+++DA G+ +T+ + +++ V TLM + + QL G + + +V +I+
Sbjct: 163 CIIFIDEIDAIGGKR--STESSSSDREVQRTLMELLN-----QLDGFKSLD---KVKVIM 212
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTRED 312
N L L+R GR+++ P D
Sbjct: 213 ATNRPDILDPALLRPGRLDRKIEIPLPND 241
>gi|356564312|ref|XP_003550399.1| PREDICTED: proteasome-activating nucleotidase-like [Glycine max]
Length = 833
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 604 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 663
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 664 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 709
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 710 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 769
Query: 330 DIVKLVDTFPGQSI 343
+VKL + F G +
Sbjct: 770 AVVKLAEGFNGADL 783
>gi|410671645|ref|YP_006924016.1| Proteasome-activating nucleotidase [Methanolobus psychrophilus R15]
gi|409170773|gb|AFV24648.1| Proteasome-activating nucleotidase [Methanolobus psychrophilus R15]
Length = 412
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 70/317 (22%), Positives = 134/317 (42%), Gaps = 46/317 (14%)
Query: 17 LKINGSS-RFSLVPSSVFLGKSLKKVSSKVSQQ--RILSKSFKVVSEYDEEKQTSQDRWA 73
LK+N + R L+ +S+ L + SSK+ +Q ++ + S + EK + R
Sbjct: 41 LKVNNENMRAKLLEASMMANTYLDE-SSKLKKQIEQLTRPPLFIASVMEVEKDMALIRQH 99
Query: 74 GLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLY 133
G ++Q+ +T+ + T FQ +++G V +++ +S R + + L
Sbjct: 100 G------NNQEVVTK----IPTHFQGEIQAGMRVCVNAAFSIVSIISRAADVRAQVMELI 149
Query: 134 IAPAF-------MDKVVVHITKNFLNLP----------NVKVPLILGIWGGKGQGKSFQC 176
+P +D V+ + ++ + LP ++ P + ++G G GK+
Sbjct: 150 TSPGIDYDMIGGLDDVLKEVIES-VELPLTEPELFERIGIEPPTGVLLYGAPGTGKTLIA 208
Query: 177 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236
+ V ++ I MS +L GE A+L++ ++ A D LFI+++DA G
Sbjct: 209 KAVASRAQATFIRMSGSDLIQKFVGEGARLVKDVFQMARD----KAPTILFIDEIDAVGG 264
Query: 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 296
T T + VN T++ + L M + V II N L L+
Sbjct: 265 MR--THDGTTGSAEVNRTMLQL--------LAEMDGFDATNNVKIIAATNRIDLLDPALL 314
Query: 297 RDGRMEKFYWAPTREDR 313
R GR ++ P +++
Sbjct: 315 RPGRFDRVIEVPLPDEK 331
>gi|449469943|ref|XP_004152678.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
[Cucumis sativus]
gi|449515750|ref|XP_004164911.1| PREDICTED: 26S protease regulatory subunit S10B homolog B-like
[Cucumis sativus]
Length = 398
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 228
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P +R + + + +GI + + E
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRTEILKIHAAGIAKHGEIDYE 334
Query: 330 DIVKLVDTFPGQSI 343
+VKL + F G +
Sbjct: 335 AVVKLAEGFNGADL 348
>gi|381163299|ref|ZP_09872529.1| AAA+ family ATPase [Saccharomonospora azurea NA-128]
gi|379255204|gb|EHY89130.1| AAA+ family ATPase [Saccharomonospora azurea NA-128]
Length = 767
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 89/202 (44%), Gaps = 23/202 (11%)
Query: 110 MSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVV--VHITKNFLNLPNVKVPLILGIWGG 167
MS+ D ++ G +LD+ D + + + V+ + +F L V P + I+G
Sbjct: 493 MSTTDTLATG--GLTLDDVGDMAEVKQSLTETVLWPLRYPDSFARL-GVAPPRGVLIYGP 549
Query: 168 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227
G GK+F + +N + EL GE + +R+ +R AA+ +F
Sbjct: 550 PGNGKTFLVRALAGTGALNVFSVKGAELMDKWVGESERAVRELFRRAAE----AAPSLIF 605
Query: 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 287
++++DA A R G ++ ++++V A L + + E R ++V +
Sbjct: 606 LDEVDALAPRRGQSSDSGASDRVVAALLTEL-------------DGVEPLRDVVVVGATN 652
Query: 288 FSTLYAP-LIRDGRMEKFYWAP 308
L P L+R GR+E+ + P
Sbjct: 653 RPELVDPALLRPGRLERLVYVP 674
>gi|222478623|ref|YP_002564860.1| proteasome-activating nucleotidase [Halorubrum lacusprofundi ATCC
49239]
gi|222451525|gb|ACM55790.1| 26S proteasome subunit P45 family [Halorubrum lacusprofundi ATCC
49239]
Length = 405
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENQP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
LFI+++DA A + T T + V T+M + L M +E V II
Sbjct: 244 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEVRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVP 318
>gi|228991900|ref|ZP_04151836.1| AAA ATPase central domain protein [Bacillus pseudomycoides DSM
12442]
gi|228998014|ref|ZP_04157615.1| AAA ATPase central domain protein [Bacillus mycoides Rock3-17]
gi|229005571|ref|ZP_04163281.1| AAA ATPase central domain protein [Bacillus mycoides Rock1-4]
gi|228755671|gb|EEM05006.1| AAA ATPase central domain protein [Bacillus mycoides Rock1-4]
gi|228761747|gb|EEM10692.1| AAA ATPase central domain protein [Bacillus mycoides Rock3-17]
gi|228767629|gb|EEM16256.1| AAA ATPase central domain protein [Bacillus pseudomycoides DSM
12442]
Length = 318
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/195 (26%), Positives = 83/195 (42%), Gaps = 31/195 (15%)
Query: 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 221
L +G G GK+F V ++ N I + + S GE K + + + EA ++
Sbjct: 75 LLFYGPPGCGKTFLARAVAGEIDANFIHLELQAILSMWTGESEKNLHEIFEEA----RRT 130
Query: 222 KMCCLFINDLDAGAG---RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 278
K C LFI++LDA G +MG Q T+ NQ++ V++ G + N
Sbjct: 131 KPCILFIDELDAFGGNRQKMGSHHQRTLVNQLL-------------VEMDG--SNSFNEG 175
Query: 279 VPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKED-----I 331
V II N + L R GR F PT E+R+ + +T + PK + +
Sbjct: 176 VYIIGATNTPWYIDPALRRPGRFNSLVFVAPPTYEERLTILD--LKTKDKPKTELQLDLV 233
Query: 332 VKLVDTFPGQSIDFF 346
K + F G + +
Sbjct: 234 AKYAEHFSGADLTYL 248
>gi|313127103|ref|YP_004037373.1| proteasome-activating nucleotidase [Halogeometricum borinquense DSM
11551]
gi|448288429|ref|ZP_21479628.1| proteasome-activating nucleotidase [Halogeometricum borinquense DSM
11551]
gi|312293468|gb|ADQ67928.1| Proteasome-activating nucleotidase [Halogeometricum borinquense DSM
11551]
gi|445569580|gb|ELY24152.1| proteasome-activating nucleotidase [Halogeometricum borinquense DSM
11551]
Length = 405
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 244 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFEERGDIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVP 318
>gi|395504310|ref|XP_003756498.1| PREDICTED: 26S protease regulatory subunit 10B [Sarcophilus
harrisii]
Length = 387
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 85/182 (46%), Gaps = 20/182 (10%)
Query: 168 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227
+G GK+ V +++ N + + + + GE A+LIR+ + A D + C +F
Sbjct: 174 EGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQPCIIF 229
Query: 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 287
++++DA GR ++ T ++ + TLM + + Q+ G + RV +I+ N
Sbjct: 230 MDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIMATNR 279
Query: 288 FSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDTFPGQ 341
TL L+R GR+++ P + R+ + I + + E IVKL D F G
Sbjct: 280 PDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGA 339
Query: 342 SI 343
+
Sbjct: 340 DL 341
>gi|291000420|ref|XP_002682777.1| cell division cycle protein 48 [Naegleria gruberi]
gi|284096405|gb|EFC50033.1| cell division cycle protein 48 [Naegleria gruberi]
Length = 776
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 90/197 (45%), Gaps = 10/197 (5%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V+VP + I+G G GKS + + N I + ++ S GE ++ I+Q + A
Sbjct: 543 VQVPKGMLIYGPNGVGKSTLAMCIARECKANFISVQCPDILSKVVGESSRAIKQLFVTA- 601
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE- 274
+ C LF + D+ A + + +++M++ L+ + + + + + E
Sbjct: 602 ---RNCAPCILFFDQFDSIARSRNDESGGSSSDKMLSTLLIEMDGVHQHYKKTSLADDEM 658
Query: 275 -ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCSGIFRTDNVPKEDI 331
+N + I+ N L + ++R GR+++ + P E RI + + +T+ +P +D
Sbjct: 659 AQNDNIFILAATNRIDLLDSAVLRPGRIDQHIYLPLPDEESRIEIL--LLKTNGMPIKDS 716
Query: 332 VKLVDTFPGQSIDFFGA 348
+D ++ F GA
Sbjct: 717 ENCIDEMAKRTSGFSGA 733
>gi|195059036|ref|XP_001995550.1| GH17814 [Drosophila grimshawi]
gi|193896336|gb|EDV95202.1| GH17814 [Drosophila grimshawi]
Length = 397
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 345
Query: 338 FPGQSI 343
F G +
Sbjct: 346 FNGADL 351
>gi|257388390|ref|YP_003178163.1| Vesicle-fusing ATPase [Halomicrobium mukohataei DSM 12286]
gi|257170697|gb|ACV48456.1| Vesicle-fusing ATPase [Halomicrobium mukohataei DSM 12286]
Length = 703
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 69/145 (47%), Gaps = 18/145 (12%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + + G+N I ++ EL GE + +R+ + A ++
Sbjct: 491 LYGPPGTGKTLLARAIAGESGVNFIHVNGPELLDRYVGESEESVREMFERA----RQTAP 546
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+F++++DA AG+ G + + V+ ++V+ L +L G+ ENP + ++
Sbjct: 547 SIVFLDEIDAVAGQRGESNE--VSERVVSQLL---------TELDGIT---ENPNLVVLA 592
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N TL L+R GR E+ P
Sbjct: 593 ATNRRETLDDALLRPGRFEQHVEVP 617
>gi|375102754|ref|ZP_09749017.1| AAA+ family ATPase [Saccharomonospora cyanea NA-134]
gi|374663486|gb|EHR63364.1| AAA+ family ATPase [Saccharomonospora cyanea NA-134]
Length = 747
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 89/202 (44%), Gaps = 23/202 (11%)
Query: 110 MSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVV--VHITKNFLNLPNVKVPLILGIWGG 167
MS+ D ++ G +LD+ D + + + V+ + +F L V P + I+G
Sbjct: 473 MSTTDTLATG--GITLDDVGDMAQVKQSLTETVLWPLRYPDSFARL-GVAPPRGVLIYGP 529
Query: 168 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227
G GK+F + +N + EL GE + +R+ +R AA+ +F
Sbjct: 530 PGNGKTFLVRALAGTGALNVFSVKGAELLDKWVGESERAVRELFRRAAE----AAPSLIF 585
Query: 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 287
++++DA A R G ++ ++++V A L + + E R ++V +
Sbjct: 586 LDEVDALAPRRGQSSDSGASDRVVAALLTEL-------------DGVEPMRDVVVVGATN 632
Query: 288 FSTLYAP-LIRDGRMEKFYWAP 308
L P L+R GR+E+ + P
Sbjct: 633 RPELVDPALLRPGRLERLIYVP 654
>gi|356551904|ref|XP_003544312.1| PREDICTED: 26S protease regulatory subunit 10B homolog A-like
isoform 1 [Glycine max]
Length = 399
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIEANFLKVVSSAIIDKYIGESARLIREMFGYAR 229
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 230 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 335
Query: 330 DIVKLVDTFPGQSI 343
+VKL + F G +
Sbjct: 336 AVVKLAEGFNGADL 349
>gi|396460518|ref|XP_003834871.1| similar to AAA family ATPase/60S ribosome export protein Rix7
[Leptosphaeria maculans JN3]
gi|312211421|emb|CBX91506.1| similar to AAA family ATPase/60S ribosome export protein Rix7
[Leptosphaeria maculans JN3]
Length = 729
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 75/171 (43%), Gaps = 23/171 (13%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+ P + +WG G GK+ + V A+ N I + EL + GE + +RQ + A
Sbjct: 499 ISAPTGVLLWGPPGCGKTLLAKAVAAESKANFISVKGPELLNKYVGESERALRQLFMRAR 558
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ C +F +++DA R T + + ++VN L +L G+
Sbjct: 559 SSVP----CVIFFDEIDALVPRR-STELHEASARVVNTLL---------TELDGL----- 599
Query: 276 NPR--VPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 322
NPR + +I N + ++R GR+E + P E+R+G+ + +
Sbjct: 600 NPRQGIYLIAATNRPEMIDEAMLRPGRLETLLYVELPKPEERVGILKALIQ 650
>gi|297839427|ref|XP_002887595.1| hypothetical protein ARALYDRAFT_895413 [Arabidopsis lyrata subsp.
lyrata]
gi|297333436|gb|EFH63854.1| hypothetical protein ARALYDRAFT_895413 [Arabidopsis lyrata subsp.
lyrata]
Length = 364
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 90/191 (47%), Gaps = 19/191 (9%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
VK+P + ++G G GK+ + + + + + + L S G+ + L+R+ +R A
Sbjct: 134 VKLPKGVLLYGPPGTGKTLLARAIASNIDSTFMTVVSSALLSKYLGDSSLLVREMFRYAR 193
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR G+++ V + L+ + QL G E
Sbjct: 194 D----HQPCIIFMDEIDA-IGRRRGSSEGEVKTSECDRVLIELLS-----QLDGF---NE 240
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+V +I+ N L L+R GR++K P + R+ + SGI + ++ +
Sbjct: 241 LDKVKVIMATNRPDVLDPALLRPGRIDKKIEIPLPNGDSRMRILKIHASGITKHGDIDYD 300
Query: 330 DIVKLVDTFPG 340
+VKL + F G
Sbjct: 301 KVVKLSEGFNG 311
>gi|28175479|gb|AAH43044.1| Psmc6 protein [Mus musculus]
Length = 390
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 87/188 (46%), Gaps = 24/188 (12%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 173 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 228
Query: 224 CCLFINDLDAGAGRMGGT--TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 281
C +F++++DA +GG ++ T ++ + TLM + + Q+ G RV +
Sbjct: 229 CIIFMDEIDA----IGGPRFSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKM 276
Query: 282 IVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLV 335
I+ N TL L+R GR+++ P + R+ + I + + E IVKL
Sbjct: 277 IMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLS 336
Query: 336 DTFPGQSI 343
D F G +
Sbjct: 337 DGFNGADL 344
>gi|156363865|ref|XP_001626260.1| predicted protein [Nematostella vectensis]
gi|156213130|gb|EDO34160.1| predicted protein [Nematostella vectensis]
Length = 391
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 174 LFGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFGYARD----HEP 229
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + + G +V +I+
Sbjct: 230 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDVLG--------QVKMIM 279
Query: 284 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + S I + + E +VKL D
Sbjct: 280 ATNRPDTLDPALLRPGRLDRKIEIALPNEQARMDILKIHSSRITKHGEIDYEAVVKLSDG 339
Query: 338 FPGQSI 343
F G +
Sbjct: 340 FNGADL 345
>gi|6434958|gb|AAF08391.1|AF145310_1 26S proteasome regulatory complex subunit p42D [Drosophila
melanogaster]
Length = 390
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 173 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 228
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 229 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 278
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 279 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 338
Query: 338 FPGQSI 343
F G +
Sbjct: 339 FNGADL 344
>gi|297742735|emb|CBI35369.3| unnamed protein product [Vitis vinifera]
Length = 3499
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 12/163 (7%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P L ++G G GK+ V + G + +S + +AGE +++R+ + EA+
Sbjct: 47 LKWPRGLLLYGPPGTGKTSLVRAVVRECGAHLTTISPHTVHRAHAGESERILREAFSEAS 106
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
GK +FI+++DA R + + TLM+ ++ P + +
Sbjct: 107 SHAVSGKPSVIFIDEIDALCPRRSSRREQDIRLASQLFTLMD-SNKPLSASV-------- 157
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRM--EKFYWAPTREDRIGV 316
P+V ++ + N + L R GR E PT E+R +
Sbjct: 158 -PQVVVVASTNRVDAIDPALRRSGRFDAEVEVTTPTEEERFQI 199
>gi|386763913|ref|NP_572308.3| regulatory particle triple-A ATPase 4 [Drosophila melanogaster]
gi|383293243|gb|AAF46146.3| regulatory particle triple-A ATPase 4 [Drosophila melanogaster]
Length = 397
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 345
Query: 338 FPGQSI 343
F G +
Sbjct: 346 FNGADL 351
>gi|367009390|ref|XP_003679196.1| hypothetical protein TDEL_0A06530 [Torulaspora delbrueckii]
gi|359746853|emb|CCE89985.1| hypothetical protein TDEL_0A06530 [Torulaspora delbrueckii]
Length = 435
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V A +G N I A + GE A++IR+ + A K+ +
Sbjct: 218 LYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA----KEHEP 273
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + Q+ G N + +I+
Sbjct: 274 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQT---KVIM 323
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N TL L+R GR+++ P
Sbjct: 324 ATNRPDTLDPALLRPGRLDRKIEIP 348
>gi|389860481|ref|YP_006362720.1| AAA ATPase [Thermogladius cellulolyticus 1633]
gi|388525384|gb|AFK50582.1| AAA family ATPase, CDC48 subfamily [Thermogladius cellulolyticus
1633]
Length = 739
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 100/245 (40%), Gaps = 35/245 (14%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + G N I + E+ S GE K +R+ +R A +
Sbjct: 502 LYGPPGTGKTLLAKAVATESGANFIAIRGPEVLSKWVGESEKAVREVFRRARQVAP---- 557
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F +++D+ A G V +++VN L +L G+ +V +I
Sbjct: 558 CVVFFDEIDSIAPARGARYDSGVTDRIVNQLL---------TELDGIQPLR---KVVVIA 605
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP------KEDIVKLVDT 337
N L L+R GR ++ + P + + + T VP E++ +L +
Sbjct: 606 ATNRPDILDPALLRPGRFDRLVYVPPPDYKARLEIFKVHTRRVPLASDVNLEELARLTEG 665
Query: 338 FPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFE--QPKMTLDKLL 395
+ G I VR+ + ER+ R V K E +P +T +++
Sbjct: 666 YTGADIAAV-----------VREAVMLALRERLEARPVEMKYFLKALEVVKPSLTKEQIE 714
Query: 396 EYGRM 400
EY R+
Sbjct: 715 EYERL 719
>gi|194896198|ref|XP_001978432.1| GG17681 [Drosophila erecta]
gi|190650081|gb|EDV47359.1| GG17681 [Drosophila erecta]
Length = 397
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 345
Query: 338 FPGQSI 343
F G +
Sbjct: 346 FNGADL 351
>gi|195469930|ref|XP_002099889.1| GE16469 [Drosophila yakuba]
gi|194187413|gb|EDX00997.1| GE16469 [Drosophila yakuba]
Length = 397
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 345
Query: 338 FPGQSI 343
F G +
Sbjct: 346 FNGADL 351
>gi|390961725|ref|YP_006425559.1| cell division protein containing CDC48 domain 1 [Thermococcus sp.
CL1]
gi|390520033|gb|AFL95765.1| cell division protein containing CDC48 domain 1 [Thermococcus sp.
CL1]
Length = 795
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 82/185 (44%), Gaps = 18/185 (9%)
Query: 150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 209
FL L + P + ++G G GK+ + V + N I + E+ S GE K IR+
Sbjct: 542 FLGL-GITPPKGILLYGPPGTGKTLLAKAVANESEANFIAIKGPEVLSKWVGESEKNIRE 600
Query: 210 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 269
+R+A ++ +FI+++DA A R G T V ++++N L
Sbjct: 601 IFRKA----RQAAPTVIFIDEIDAIAPRRG-TDVNRVTDRLINQLLTE------------ 643
Query: 270 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 329
M +EN V +I N + L+R GR ++ P +++ + T NVP
Sbjct: 644 MDGIQENSGVVVIGATNRPDIIDPALLRPGRFDRLILVPAPDEKARLEIFKVHTRNVPLA 703
Query: 330 DIVKL 334
+ VKL
Sbjct: 704 EDVKL 708
>gi|195390540|ref|XP_002053926.1| GJ24151 [Drosophila virilis]
gi|194152012|gb|EDW67446.1| GJ24151 [Drosophila virilis]
Length = 399
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + +++ N + + + + GE A+LIR+ + A D +
Sbjct: 182 LYGPPGTGKTLLARAIASQLDANFLKVVSSAIVDKYIGESARLIREMFSYARD----HQP 237
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + G +V II+
Sbjct: 238 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKIIM 287
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P R D + + + + + + E +VKL D
Sbjct: 288 ATNRPDTLDPALLRPGRLDRKLEIPLPNEIARLDILKIHAAPLSKQGEIDYEAVVKLSDM 347
Query: 338 FPGQSI 343
F G +
Sbjct: 348 FNGADL 353
>gi|110669061|ref|YP_658872.1| AAA-type ATPase (transitional ATPase homolog) [Haloquadratum
walsbyi DSM 16790]
gi|385804649|ref|YP_005841049.1| AAA ATPase [Haloquadratum walsbyi C23]
gi|109626808|emb|CAJ53276.1| AAA-type ATPase (CDC48 subfamily) [Haloquadratum walsbyi DSM 16790]
gi|339730141|emb|CCC41459.1| AAA-type ATPase (CDC48 subfamily) [Haloquadratum walsbyi C23]
Length = 742
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLIAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SP 556
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+F ++LD+ A GG T V+ ++VN L +L G+ EEN V ++
Sbjct: 557 TVIFFDELDSLAPSRGGGTGNNVSERVVNQLL---------TELDGL---EENGNVMVVA 604
Query: 284 TGNDFSTLYAPLIRDGRMEKF 304
N + LIR GR ++
Sbjct: 605 ATNRPDMIDPALIRSGRFDRL 625
>gi|442753613|gb|JAA68966.1| Putative 26s proteasome regulatory complex atpase rpt4 [Ixodes
ricinus]
Length = 404
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V ++ N + + + + GE A+LIR+ + A D +
Sbjct: 187 LYGPPGTGKTLLARAVATQIDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 242
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V II+
Sbjct: 243 CVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKIIM 292
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P R D + + + I + V E +VKL D
Sbjct: 293 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLDIVKIHAAPITKHGEVDWEAVVKLSDG 352
Query: 338 FPGQSI 343
F G +
Sbjct: 353 FNGADL 358
>gi|378725904|gb|EHY52363.1| 26S protease subunit rpt4 [Exophiala dermatitidis NIH/UT8656]
Length = 393
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLDTNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P + R+ + +G+ N+ E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHAAGVVTEGNIDFE 333
Query: 330 DIVKLVDTFPGQSI 343
+VK+ D G +
Sbjct: 334 SVVKMSDGLNGADL 347
>gi|229060841|ref|ZP_04198196.1| AAA ATPase central domain protein [Bacillus cereus AH603]
gi|228718488|gb|EEL70120.1| AAA ATPase central domain protein [Bacillus cereus AH603]
Length = 308
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 84/195 (43%), Gaps = 31/195 (15%)
Query: 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 221
L +G G GK+F V ++ N I + + S +GE K + + + EA +K
Sbjct: 68 LLFYGPPGCGKTFLARAVAGEIHANFIHLELQAILSMWSGEAEKNLHEVFEEA----RKT 123
Query: 222 KMCCLFINDLDAGAG---RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 278
K C LFI++LDA G +MG Q T+ NQ++ V++ G + N
Sbjct: 124 KPCILFIDELDAYGGNRQKMGAHHQRTLVNQLL-------------VEMDG--SNSFNEG 168
Query: 279 VPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKED-----I 331
V II N + L R GR F P +E+R+ + +T + P+ + +
Sbjct: 169 VYIIGATNTPWYIDPALRRPGRFNSLVFVAPPNKEERLTILE--LKTKDKPRMELQLDFV 226
Query: 332 VKLVDTFPGQSIDFF 346
K + F G + +
Sbjct: 227 SKYAEHFSGADLTYL 241
>gi|195133630|ref|XP_002011242.1| GI16424 [Drosophila mojavensis]
gi|193907217|gb|EDW06084.1| GI16424 [Drosophila mojavensis]
Length = 397
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 345
Query: 338 FPGQSI 343
F G +
Sbjct: 346 FNGADL 351
>gi|194763525|ref|XP_001963883.1| GF21021 [Drosophila ananassae]
gi|190618808|gb|EDV34332.1| GF21021 [Drosophila ananassae]
Length = 397
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 345
Query: 338 FPGQSI 343
F G +
Sbjct: 346 FNGADL 351
>gi|83315300|ref|XP_730734.1| 26S proteasome subunit P45 [Plasmodium yoelii yoelii 17XNL]
gi|23490548|gb|EAA22299.1| 26S proteasome subunit P45 family, putative [Plasmodium yoelii
yoelii]
Length = 475
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + + I + EL GE A+L+R+ ++ A K K
Sbjct: 231 LYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARLVRELFQMA----KSKKA 286
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C LFI+++DA G G + + + V T++ I + QL G N+ + +I+
Sbjct: 287 CILFIDEVDAIGGSRGDESAH--GDHEVQRTMLEIVN-----QLDGFDNRGN---IKVIM 336
Query: 284 TGNDFSTLYAPLIRDGRMEK 303
N TL + L+R GR+++
Sbjct: 337 ATNRPDTLDSALVRPGRIDR 356
>gi|448373709|ref|ZP_21557738.1| Vesicle-fusing ATPase [Halovivax asiaticus JCM 14624]
gi|445661424|gb|ELZ14209.1| Vesicle-fusing ATPase [Halovivax asiaticus JCM 14624]
Length = 690
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 18/154 (11%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 214
N P + ++G G GK+ + + +N + + E+ GE K IR+ + A
Sbjct: 467 NTDPPAGVLLYGPPGTGKTLLARALAGETDVNFVQVDGPEVLDRYVGESEKAIRKLFERA 526
Query: 215 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 274
++ +FI+++DA GR G + + V ++V+ L +L GM
Sbjct: 527 ----RQSAPSIIFIDEIDALVGRRGES--HEVTERVVSQLL---------TELDGMR--- 568
Query: 275 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
ENP + ++ N L L+R GR++ P
Sbjct: 569 ENPNLVVLAATNRMDDLDPALLRPGRLDTHVLVP 602
>gi|15922918|ref|NP_378587.1| cell division control protein [Sulfolobus tokodaii str. 7]
gi|342306740|dbj|BAK54829.1| ATPase [Sulfolobus tokodaii str. 7]
Length = 700
Score = 48.9 bits (115), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 20/177 (11%)
Query: 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 216
++P + ++G G GK+ V + G N I ++ EL S GE + IR+ +++A
Sbjct: 463 EIPSGILLYGPPGTGKTMLARAVAHESGANFIAINGPELMSMWVGETERAIREVFKKA-- 520
Query: 217 IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 276
++ +F +++DA A G V +++V+ L ++ G+ + E
Sbjct: 521 --RQSSPTIIFFDEIDAIAVARGADPN-KVTDRIVSQLL---------TEMDGISKRRE- 567
Query: 277 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCSGIFRTDNVPKEDI 331
+V II N + L+R GR+EK + P + RI + S + +N P E+I
Sbjct: 568 -KVVIIAATNRPDIIDPALLRPGRLEKLIYVPPPDYQTRIALFSRLI--NNRPHEEI 621
>gi|116788974|gb|ABK25069.1| unknown [Picea sitchensis]
Length = 398
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 228
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARMEILKIHAAGIAKHGEIDYE 334
Query: 330 DIVKLVDTFPGQSI 343
+VKL + F G +
Sbjct: 335 AVVKLAEGFNGADL 348
>gi|255714923|ref|XP_002553743.1| KLTH0E06006p [Lachancea thermotolerans]
gi|238935125|emb|CAR23306.1| KLTH0E06006p [Lachancea thermotolerans CBS 6340]
Length = 819
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 23/176 (13%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+ P + +WG G GK+ + V + N I + EL + GE + IRQ + A
Sbjct: 553 ISAPAGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFSRA- 611
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ C +F ++LDA R + + ++++VN L +L G+
Sbjct: 612 ---RASVPCVIFFDELDALVPRRDASLSES-SSRVVNTLL---------TELDGL----- 653
Query: 276 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVP 327
N R I V G N + A ++R GR++K F P E+++ + + RT+ P
Sbjct: 654 NDRRGIFVIGATNRPDMIDAAMLRPGRLDKTLFIELPNFEEKLDIIKTLARTNGTP 709
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 93/225 (41%), Gaps = 34/225 (15%)
Query: 139 MDKVVVHITKNFLNLP----------NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPI 188
MD VV + + + LP V+ P + + G G GK+ + ++ + I
Sbjct: 207 MDDVVAQLME-LIGLPILHPEIFASTGVEPPRGVLLHGPPGCGKTSIANALAGELQVPFI 265
Query: 189 MMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNN 248
+SA + SG +GE K IR + EA + C +F +++DA + G Q +
Sbjct: 266 SISAPSVVSGMSGESEKKIRDLFEEAKSLAP----CLVFFDEIDAITPKRDGGAQREMER 321
Query: 249 QMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW 306
++V A L+ D + + G P+I+ G N +L A L R GR ++
Sbjct: 322 RIV-AQLLTSMDELSFEKTGGK---------PVIIIGATNRPDSLDAALRRAGRFDREIC 371
Query: 307 --APTREDRIGVCSGIFRTDNVPKE-DIVKLVDTFPGQSIDFFGA 348
P R+ + + T + D +KL PG F GA
Sbjct: 372 LNVPNEISRLHILKKMSSTLKIDGSIDFLKLAKLTPG----FVGA 412
>gi|148508161|gb|ABQ75952.1| AAA-type ATPase [uncultured haloarchaeon]
Length = 752
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 511 LYGPPGTGKTLIAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SP 566
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+F ++LD+ A GG T V+ ++VN L +L G+ EEN V ++
Sbjct: 567 TVIFFDELDSLAPSRGGGTGNNVSERVVNQLL---------TELDGL---EENGNVMVVA 614
Query: 284 TGNDFSTLYAPLIRDGRMEKF 304
N + LIR GR ++
Sbjct: 615 ATNRPDMIDPALIRSGRFDRL 635
>gi|390600180|gb|EIN09575.1| 26S proteasome regulatory complex ATPase RPT4 [Punctularia
strigosozonata HHB-11173 SS5]
Length = 448
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V A + N + + + + GE A+++R+ + A
Sbjct: 175 IKPPKGVLLYGPPGTGKTLLARAVAATLQTNFLKVVSSAIVDKYIGESARVVREMFGYAR 234
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 235 D----HEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 280
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
RV +I+ N TL L+R GR+++ P + R+ + + + ++ + E
Sbjct: 281 LGRVKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPVNKSGEIDYE 340
Query: 330 DIVKLVDTFPGQSI 343
IVKL D F G +
Sbjct: 341 AIVKLSDGFNGADL 354
>gi|389852490|ref|YP_006354724.1| cell division control protein 48, aaa family [Pyrococcus sp. ST04]
gi|388249796|gb|AFK22649.1| putative cell division control protein 48, aaa family [Pyrococcus
sp. ST04]
Length = 837
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 16/150 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + + + N I + E+ S GE K IR+ +R+A ++
Sbjct: 584 LYGPPGTGKTLLAKAIATESQANFIAIRGPEVLSKWVGESEKRIREIFRKA----RQAAP 639
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A G T V ++++N L M +EN V +I
Sbjct: 640 SIIFIDEIDAIAPARGTTEGERVTDRLINQLLTE------------MDGIQENSGVVVIA 687
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTREDR 313
N L L+R GR ++ P +++
Sbjct: 688 ATNRPDILDPALLRPGRFDRLILVPAPDEK 717
>gi|414076388|ref|YP_006995706.1| AAA ATPase [Anabaena sp. 90]
gi|413969804|gb|AFW93893.1| AAA ATPase [Anabaena sp. 90]
Length = 529
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 76/164 (46%), Gaps = 23/164 (14%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
+PN K L++GI +G GKS + + + + + + G L G GE IRQ +
Sbjct: 264 IPNPKGVLLVGI---QGTGKSLSAKTIAHEWRLPLLRLDVGRLFGGIVGESENRIRQMIQ 320
Query: 213 EAADIIKKGKMCCLFINDLDAGAGRM-GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 271
A I C L+++++D G + GT + ++ V TL+ +
Sbjct: 321 LAEAI----SPCVLWMDEIDKAFGNINSGTDGDSGTSRRVFGTLIT-------------W 363
Query: 272 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 313
QE+ V ++ T N+ L A L+R GR ++ ++ PT ++R
Sbjct: 364 MQEKTSPVFMVATANNVQILPAELLRKGRFDEIFFLNLPTEKER 407
>gi|159903815|ref|YP_001551159.1| ATPase AAA [Prochlorococcus marinus str. MIT 9211]
gi|159888991|gb|ABX09205.1| ATPase of the AAA+ family [Prochlorococcus marinus str. MIT 9211]
Length = 492
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 82/202 (40%), Gaps = 35/202 (17%)
Query: 155 NVKVPLILGIW--GGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
N +PL G+ G +G GKS + + + + + G L +G G R+ R
Sbjct: 254 NFGLPLPRGVLLIGPQGTGKSLTAKAIAHSWSMPLLRLDVGRLFAGLVGASEARTRETIR 313
Query: 213 EAADIIKKGKMCCLFINDLDAGAG----RMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 268
A + C L+I+++D G G GGT+Q + N +
Sbjct: 314 RAEAMAP----CVLWIDEIDKGFGGDARSDGGTSQRVLANVLT----------------- 352
Query: 269 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIF---RT 323
+ E+ V ++ T N L L+R GR ++ + PT ++R+ + + R
Sbjct: 353 --WMAEKTSAVFVVATANGVDRLPGELLRKGRFDEIFLLDLPTTQERLSILNLHLNQRRP 410
Query: 324 D-NVPKEDIVKLVDTFPGQSID 344
D +P + IV D F G ++
Sbjct: 411 DLEIPLQSIVSRTDGFSGAELE 432
>gi|363749395|ref|XP_003644915.1| hypothetical protein Ecym_2365 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888548|gb|AET38098.1| Hypothetical protein Ecym_2365 [Eremothecium cymbalariae
DBVPG#7215]
Length = 427
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V A +G N I A + GE A++IR+ + A K+ +
Sbjct: 210 LYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA----KEHEP 265
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + Q+ G N + +I+
Sbjct: 266 CIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQT---KVIM 315
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P R+ + + + +T E VK+ D
Sbjct: 316 ATNRPDTLDPALLRPGRLDRKIEISLPNEAGRLEIFKIHTAKVKKTGEFDFEATVKMSDG 375
Query: 338 FPGQSI 343
F G I
Sbjct: 376 FNGADI 381
>gi|344232542|gb|EGV64421.1| 26S proteasome subunit P45 [Candida tenuis ATCC 10573]
gi|344232543|gb|EGV64422.1| hypothetical protein CANTEDRAFT_114256 [Candida tenuis ATCC 10573]
Length = 414
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 24/196 (12%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 189 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFSYA- 247
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 248 ---REHSPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 296
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPK----- 328
+ +I+ N TL L+R GR+++ P R+ + T N+ K
Sbjct: 297 --QTKVIMATNRPDTLDPALLRPGRLDRKIEIGLPNEAGRLEIFK--IHTANIAKHGEFD 352
Query: 329 -EDIVKLVDTFPGQSI 343
E V++ D F G I
Sbjct: 353 FEAAVRMSDGFNGADI 368
>gi|195442532|ref|XP_002069008.1| GK12330 [Drosophila willistoni]
gi|194165093|gb|EDW79994.1| GK12330 [Drosophila willistoni]
Length = 408
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + +++ +N + + + + GE A+ IR+ + A D +
Sbjct: 191 LYGPPGTGKTLLARAIASQLDVNFLKIVSSAIVDKYIGESARQIREMFAYARD----HQP 246
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + G +V II+
Sbjct: 247 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKIIM 296
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P R D + + + + + + E IVKL D
Sbjct: 297 ATNRPDTLDPALLRPGRLDRKLEIPLPNEMARMDILKIHAAPLVKKGEIDYEAIVKLSDQ 356
Query: 338 FPGQSI 343
F G +
Sbjct: 357 FNGADL 362
>gi|125981363|ref|XP_001354688.1| GA17461 [Drosophila pseudoobscura pseudoobscura]
gi|195164937|ref|XP_002023302.1| GL20276 [Drosophila persimilis]
gi|54642999|gb|EAL31743.1| GA17461 [Drosophila pseudoobscura pseudoobscura]
gi|194105407|gb|EDW27450.1| GL20276 [Drosophila persimilis]
Length = 397
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALTIAKHGEIDYEAIVKLSDN 345
Query: 338 FPGQSI 343
F G +
Sbjct: 346 FNGADL 351
>gi|300867943|ref|ZP_07112583.1| ATPase, AAA family protein [Oscillatoria sp. PCC 6506]
gi|300334080|emb|CBN57761.1| ATPase, AAA family protein [Oscillatoria sp. PCC 6506]
Length = 527
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 21/155 (13%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
+PN K L++GI +G GKS + + + + + M G+L G GE IRQ
Sbjct: 282 IPNPKGVLLVGI---QGSGKSLAAKSIAHEWHLPLLRMDTGKLFGGIVGESESRIRQMIE 338
Query: 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQY-TVNNQMVNATLMNIADNPTNVQLPGMY 271
A I C L+I+ +D G + T+ + ++ V ++L+N +
Sbjct: 339 LAEAIAP----CVLWIDQIDLAFGNINSATERDSGTSRRVFSSLIN-------------W 381
Query: 272 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 306
QE+ V I+ T N+ L L+R G+ ++ ++
Sbjct: 382 MQEKTSSVFIVATANNVRMLPIELLRKGKFDEIFF 416
>gi|358335648|dbj|GAA54299.1| 26S proteasome regulatory subunit T4, partial [Clonorchis sinensis]
Length = 595
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 378 LYGPPGTGKTLLARAVASQLDANFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 433
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + G +V +I+
Sbjct: 434 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKMIM 483
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P R D + + S I + + E +VKL D
Sbjct: 484 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARMDIMKIHSAPIAKHGEIDWEAVVKLSDG 543
Query: 338 FPGQSI 343
F G +
Sbjct: 544 FNGADL 549
>gi|402855921|ref|XP_003892557.1| PREDICTED: 26S protease regulatory subunit 10B-like [Papio anubis]
Length = 418
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ + + + + + GE A+LI RE + + +
Sbjct: 201 LYGPPGTGKTLLARAVASQLDCSFLKVVSSSIVDKYIGESARLI----REMCNYARDHQP 256
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM++ + Q+ G RV +I+
Sbjct: 257 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMDLLN-----QMDGFDTLH---RVKMIM 306
Query: 284 TGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIGVCSG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ R D + + +G I + + E IVKL D
Sbjct: 307 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQVRLDTLKIHAGPITKHGEIDYEAIVKLSDG 366
Query: 338 FPGQSI 343
F G +
Sbjct: 367 FNGADL 372
>gi|215259685|gb|ACJ64334.1| 26S proteasome regulatory complex ATPase RPT4 [Culex tarsalis]
Length = 323
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 90/186 (48%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 109 LYGPPGTGKTSLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 164
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 165 CIIFMDEIDALGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 214
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P R + + + +G I + ++ E +VKL D
Sbjct: 215 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAGPIAKHGDIDYEAVVKLSDN 274
Query: 338 FPGQSI 343
F G +
Sbjct: 275 FNGADL 280
>gi|221060773|ref|XP_002261956.1| 26S proteasome regulatory subunit [Plasmodium knowlesi strain H]
gi|193811106|emb|CAQ41834.1| 26S proteasome regulatory subunit, putative [Plasmodium knowlesi
strain H]
Length = 393
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + GE A++IR+ + A
Sbjct: 168 IKTPKGVLLYGPPGTGKTLLARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFTYA- 226
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR +Q T ++ + TLM + ++ L G EE
Sbjct: 227 ---KEHQPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLNH-----LDGF---EE 273
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
V II+ N L LIR GR+++ P + RI + + + + ++ E
Sbjct: 274 LGNVKIIMATNRPDVLDPALIRPGRLDRKIEIPLPNETARIEILKIHANKMTKLGDIDYE 333
Query: 330 DIVKLVDTFPGQSI 343
+ +L D F G +
Sbjct: 334 SVCRLCDGFNGADL 347
>gi|398410121|ref|XP_003856514.1| hypothetical protein MYCGRDRAFT_84010 [Zymoseptoria tritici IPO323]
gi|339476399|gb|EGP91490.1| hypothetical protein MYCGRDRAFT_84010 [Zymoseptoria tritici IPO323]
Length = 690
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 28/173 (16%)
Query: 139 MDKVVVHITKNFL-------NLPNVKVPLILGIW--GGKGQGKSFQCELVFAKMGINPIM 189
MD ++ +T+ + + P+ GI G G GK+ C A++ + I
Sbjct: 130 MDTMIKQMTRQLVMPIGRAAKFHEARYPMPKGILLHGPPGCGKTMLCRAYAAELKVPFIE 189
Query: 190 MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 249
+ + SG +GE K +R+++ EA K+ C LFI+++DA A + T+Q + +
Sbjct: 190 ILGPSIVSGMSGESEKAVREKFDEA----KRNAPCLLFIDEIDAIAPKR-DTSQSQMEKR 244
Query: 250 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGR 300
+V L++ M + +++P P+IV N +L L R GR
Sbjct: 245 IVAQLLVS------------MDDLQKDPSKPVIVLAATNRPDSLDPALRRGGR 285
>gi|212224263|ref|YP_002307499.1| CDC48/VCP [Thermococcus onnurineus NA1]
gi|212009220|gb|ACJ16602.1| Hypothetical CDC48/VCP [Thermococcus onnurineus NA1]
Length = 797
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 80/183 (43%), Gaps = 19/183 (10%)
Query: 150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 209
FL L + P + ++G G GK+ + V + N I + E+ S GE K IR+
Sbjct: 543 FLGL-GITPPKGILLYGPPGTGKTLLAKAVATESEANFIAIRGPEVLSKWVGESEKNIRE 601
Query: 210 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 269
+R+A ++ +FI+++DA A R G T V ++++N L
Sbjct: 602 IFRKA----RQAAPTVIFIDEIDAIAPRRG-TDVNRVTDRLINQLLTE------------ 644
Query: 270 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP-K 328
M EN V +I N + L+R GR ++ P +++ + T NVP
Sbjct: 645 MDGIAENSGVVVIAATNRPDIIDPALLRPGRFDRLILVPAPDEKARLEIFKVHTRNVPLA 704
Query: 329 EDI 331
EDI
Sbjct: 705 EDI 707
>gi|389586002|dbj|GAB68731.1| 26S proteasome regulatory subunit [Plasmodium cynomolgi strain B]
Length = 393
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + GE A++IR+ + A
Sbjct: 168 IKTPKGVLLYGPPGTGKTLLARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFTYA- 226
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR +Q T ++ + TLM + ++ L G EE
Sbjct: 227 ---KEHQPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLNH-----LDGF---EE 273
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
V II+ N L LIR GR+++ P + RI + + + + ++ E
Sbjct: 274 LGNVKIIMATNRPDVLDPALIRPGRLDRKIEIPLPNETARIEILKIHANKMTKLGDIDYE 333
Query: 330 DIVKLVDTFPGQSI 343
+ +L D F G +
Sbjct: 334 SVCRLCDGFNGADL 347
>gi|345004569|ref|YP_004807422.1| proteasome-activating nucleotidase [halophilic archaeon DL31]
gi|344320195|gb|AEN05049.1| Proteasome-activating nucleotidase [halophilic archaeon DL31]
Length = 404
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+ G G GK+ + V A+ + I M+ EL GE AKL+R + ++ + +
Sbjct: 187 LHGPPGTGKTLLAKAVAAETNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARDNEP 242
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 243 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGDIRIIA 292
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 293 ATNRFDMLDEAILRPGRFDRLIEVP 317
>gi|219116749|ref|XP_002179169.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409060|gb|EEC48992.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 421
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 91/193 (47%), Gaps = 24/193 (12%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + + + A + GE A++IR+ + A
Sbjct: 196 IKAPKGVLLYGPPGTGKTLLARALASNISATFLKVVASAIVDKYIGESARIIREMFGFAR 255
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGT--TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 273
D + C +F++++DA +GG+ ++ T ++ + TLM + + Q+ G
Sbjct: 256 D----HEPCVIFMDEIDA----IGGSRFSEGTSADREIQRTLMELLN-----QMDGF--- 299
Query: 274 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVP 327
EE +V +++ N L L+R GR+++ P R+ + SGI + ++
Sbjct: 300 EEQGQVKMVMATNRPDILDPALLRPGRLDRKIEIPEPNESQRLEILKIHASGITKRGDID 359
Query: 328 KEDIVKLVDTFPG 340
E +VKL D G
Sbjct: 360 FESVVKLADGLNG 372
>gi|385804130|ref|YP_005840530.1| AAA ATPase [Haloquadratum walsbyi C23]
gi|339729622|emb|CCC40894.1| AAA-type ATPase (CDC48 subfamily) [Haloquadratum walsbyi C23]
Length = 765
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 94/214 (43%), Gaps = 33/214 (15%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 214
N P ++G G GK+ + + IN + ++ EL GE K +R+ + A
Sbjct: 521 NTDPPTGALLYGPPGTGKTLLARAIAGEAEINFVEVAGPELLDRYVGESEKAVREVFERA 580
Query: 215 ADIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 273
++ +F +++DA A R GG T V +++V+ L + D T+
Sbjct: 581 ----RQAAPAIIFFDEIDAVAANRAGGGTDSGVGDRVVSQLLTEL-DRITD--------- 626
Query: 274 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED---RIGV----CSGIFRTDNV 326
+P + ++ N T+ + L+R GR+E P R D R + +G DN+
Sbjct: 627 --HPNLVVLAATNRRDTIDSALLRPGRLESHIAVP-RPDAAARRAILEIHLAGKPLADNI 683
Query: 327 PKEDIVKLVDTFPGQSIDFFGA-LRARVYDDEVR 359
++++V G++ + GA + A V D VR
Sbjct: 684 DRDELV-------GKTAGYVGADIEAMVRDASVR 710
>gi|260803780|ref|XP_002596767.1| hypothetical protein BRAFLDRAFT_114160 [Branchiostoma floridae]
gi|229282027|gb|EEN52779.1| hypothetical protein BRAFLDRAFT_114160 [Branchiostoma floridae]
Length = 392
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 175 LYGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARLIREMFGYAKD----HQP 230
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 231 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DRLGKVKMIM 280
Query: 284 TGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIGVCSG-IFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ R D + + SG + + + E IVKL D
Sbjct: 281 ATNRPDTLDPALLRPGRLDRKIQIDLPNEQARMDILKIHSGPMTKHGEIDYEAIVKLSDG 340
Query: 338 FPGQSI 343
F G +
Sbjct: 341 FNGADL 346
>gi|300790371|ref|YP_003770662.1| ATPase [Amycolatopsis mediterranei U32]
gi|384153901|ref|YP_005536717.1| ATPase [Amycolatopsis mediterranei S699]
gi|399542249|ref|YP_006554911.1| ATPase [Amycolatopsis mediterranei S699]
gi|299799885|gb|ADJ50260.1| ATPase [Amycolatopsis mediterranei U32]
gi|340532055|gb|AEK47260.1| ATPase [Amycolatopsis mediterranei S699]
gi|398323019|gb|AFO81966.1| ATPase [Amycolatopsis mediterranei S699]
Length = 755
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 105/246 (42%), Gaps = 26/246 (10%)
Query: 110 MSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVV--VHITKNFLNLPNVKVPLILGIWGG 167
MS+ D ++ G +LD+ + L + + + V+ + +F L V+ P + ++G
Sbjct: 478 MSTSDNLATG--GLTLDDVGNMLDVKQSLTEAVLWPLRYPDSFARL-GVEPPRGVLLYGP 534
Query: 168 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227
G GK+F + +N + EL GE + +R+ +R AA+ +F
Sbjct: 535 PGGGKTFLVRALAGTGALNVFAVKGAELMDKWVGESERAVRELFRRAAE----AAPALIF 590
Query: 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 287
++++DA A R G ++ V +++V A L +L G+ E +++ +
Sbjct: 591 LDEIDALAPRRGQSSDSGVADRVVAALL---------TELDGVEPMREV----VVLGATN 637
Query: 288 FSTLYAP-LIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE---DIVKLVDTFPGQSI 343
L P L+R GR+E+ + P + + N P D+V + T G S
Sbjct: 638 RPELVDPALLRPGRLERRVYVPPPDAEARAAILAASSKNTPLAGDVDLVAVASTLDGYSA 697
Query: 344 DFFGAL 349
AL
Sbjct: 698 ADCAAL 703
>gi|381159205|ref|ZP_09868438.1| AAA+ family ATPase [Thiorhodovibrio sp. 970]
gi|380880563|gb|EIC22654.1| AAA+ family ATPase [Thiorhodovibrio sp. 970]
Length = 490
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 88/212 (41%), Gaps = 29/212 (13%)
Query: 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYRE 213
PN + P + + G +G GKS + V + G+ + + G L + GE + +R+ +
Sbjct: 258 PNAERPRGIMLLGVQGGGKSLAAKAVAGRFGVPLLRLDFGALYNKYIGETERNLRESLKT 317
Query: 214 AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 273
A + C L++++++ G GG++ +++ L +A+ V L
Sbjct: 318 AEVMAP----CVLWLDEIEKGLA--GGSSDEGTGQRIIGTLLTWMAERKAAVFL------ 365
Query: 274 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-----APTRED--RIGVCSGIFRTDNV 326
+ T ND L L+R GR ++ ++ A R + RI + D+
Sbjct: 366 --------VATSNDIKQLPPELVRKGRFDEIFFVDLPDAEVRREIFRIHLAKRNLNPDDF 417
Query: 327 PKEDIVKLVDTFPGQSID--FFGALRARVYDD 356
+ + L D F G I+ AL A DD
Sbjct: 418 DLDQLAALSDGFSGAGIEQAVVSALYAARADD 449
>gi|386001528|ref|YP_005919827.1| proteasome-activating nucleotidase [Methanosaeta harundinacea 6Ac]
gi|357209584|gb|AET64204.1| Proteasome-activating nucleotidase [Methanosaeta harundinacea 6Ac]
Length = 406
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 19/183 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + + + EL GE A+++R+ + ++ +
Sbjct: 184 LYGPPGTGKTLLAKAVASSTEATFLRVVGSELVQKYIGEGARMVRELF----ELAQNKAP 239
Query: 224 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282
+F+++LDA G+ RM G T ++ V TLM + L M + V +I
Sbjct: 240 AIIFVDELDAIGSRRMDGATS---GDREVQRTLMQL--------LAEMDGFDPRGEVKLI 288
Query: 283 VTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNV-PKEDIVKLVDTFP 339
N L L+R GR ++ + P+RE R + S + N+ P D+ ++ D
Sbjct: 289 AATNRLDMLDPALLRPGRFDRLIYVPLPSRESRYSILSIHTASMNLHPDVDLRRIADGAE 348
Query: 340 GQS 342
G S
Sbjct: 349 GAS 351
>gi|160331227|ref|XP_001712321.1| prsS6 [Hemiselmis andersenii]
gi|159765768|gb|ABW97996.1| prsS6 [Hemiselmis andersenii]
Length = 375
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 80/181 (44%), Gaps = 22/181 (12%)
Query: 146 ITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAK 205
I KNF + +P + ++G G GK+ + V K + I + E GE K
Sbjct: 149 INKNFYEKIGIDLPKGVMLFGPPGTGKTLVVKAVALKTKASFIKTAGSEFVQKYLGEGPK 208
Query: 206 LIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 265
++R ++ I +K +FI+++DA A R T ++ V LM + +
Sbjct: 209 MVRDLFK----IARKNSPSIVFIDEIDAIATRRFDAQ--TGADREVQRILMELLN----- 257
Query: 266 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK---FYWAPTREDRIGVCSGIFR 322
Q+ G EEN V +I+ N TL L+R GR+++ F RE R IF+
Sbjct: 258 QMDGF---EENKNVRVIMATNRIDTLDPALLRPGRIDRKIGFPLPNRREKRF-----IFQ 309
Query: 323 T 323
T
Sbjct: 310 T 310
>gi|15227690|ref|NP_178463.1| cell division control protein 48-B [Arabidopsis thaliana]
gi|28201774|sp|Q9ZPR1.1|CD48B_ARATH RecName: Full=Cell division control protein 48 homolog B;
Short=AtCDC48b
gi|4406773|gb|AAD20084.1| putative AAA-type ATPase [Arabidopsis thaliana]
gi|17064734|gb|AAL32521.1| putative AAA-type ATPase [Arabidopsis thaliana]
gi|30725416|gb|AAP37730.1| At2g03670 [Arabidopsis thaliana]
gi|330250640|gb|AEC05734.1| cell division control protein 48-B [Arabidopsis thaliana]
Length = 603
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 13/163 (7%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P L ++G G GK+ V + + I++S + +AGE K++R+ + EA+
Sbjct: 53 LKWPRGLLLYGPPGTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEKVLREAFAEAS 112
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K +FI+++D R + V TLM+ ++ P++
Sbjct: 113 SHAVSDKPSVIFIDEIDVLCPRRDARREQDVRIASQLFTLMD-SNKPSS----------S 161
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGV 316
PRV ++ + N + L R GR + P EDR+ +
Sbjct: 162 APRVVVVASTNRVDAIDPALRRAGRFDALVEVSTPNEEDRLKI 204
>gi|159116259|ref|XP_001708351.1| 26S protease regulatory subunit 7 [Giardia lamblia ATCC 50803]
gi|157436462|gb|EDO80677.1| 26S protease regulatory subunit 7 [Giardia lamblia ATCC 50803]
Length = 401
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/231 (25%), Positives = 102/231 (44%), Gaps = 25/231 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GKS C+ + +GI+ I +L GE A+L+R + A
Sbjct: 169 IKPPKSILLYGAPGTGKSLICKCLANSLGISYIKCVGSQLIRKYIGESARLVRDLFAYA- 227
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K K C L I+++DA A + + T N++ V+ L+ + ++ G +E
Sbjct: 228 ---KLKKPCLLMIDEVDAIATKR--SDDGTHNDREVDRALLQLL-----TEIDGFTGLDE 277
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGR----MEKFYWAPT-REDRIGVCS-GIFRTDNVPKE 329
+ + I+ N L L+R GR +E PT R + + + S G+ ++V
Sbjct: 278 S--IKIVFCTNRPEALDPALMRPGRCDVKIEIRLPDPTGRYEILKIHSKGLSLGEDVDFA 335
Query: 330 DIVKLVDTFPGQSIDF------FGALRARVYDDEVRKWISEVGIERIGKRL 374
IVK D F G + GALRA + ++ V + R K +
Sbjct: 336 GIVKSTDGFNGADLRNVITEAGLGALRAERGEIHQEDLLAAVAVIRSNKSI 386
>gi|378729074|gb|EHY55533.1| adenosinetriphosphatase [Exophiala dermatitidis NIH/UT8656]
Length = 814
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
Query: 138 FMDKVVVHITK-NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196
F D +V+ +T+ V+ P + I G G GK+ A++G+N I +SA +
Sbjct: 213 FEDLLVLPMTRPEIYTSSKVQPPRGVLIHGPPGCGKTMIANAFAAELGVNFISISAPSIV 272
Query: 197 SGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233
SG +GE K +R + EA K+ C +FI+++DA
Sbjct: 273 SGMSGESEKALRDHFDEA----KRAAPCLIFIDEIDA 305
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 18/155 (11%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+WG G GK+ + N I + EL + GE + +RQ + A +
Sbjct: 583 LWGPPGCGKTLLAKACANSSHANFISVKGPELLNKYVGESERAVRQVFNRARSSVP---- 638
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+F ++LDA R GT + ++VN L +L G+ N E + +I
Sbjct: 639 VIIFFDELDALVPRRDGTMS-EASARVVNTLL---------TELDGVGNSREG--IYVIA 686
Query: 284 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV 316
N + ++R GR+E F P E+R+ +
Sbjct: 687 ATNRPDIIDPAMLRPGRLETLLFVGLPNAEERVDI 721
>gi|126140372|ref|XP_001386708.1| 26S protease subunit RPT4 (26S protease subunit SUG2) (Proteasomal
cap subunit) [Scheffersomyces stipitis CBS 6054]
gi|126093992|gb|ABN68679.1| 26S protease subunit RPT4 (26S protease subunit SUG2) (Proteasomal
cap subunit) [Scheffersomyces stipitis CBS 6054]
Length = 416
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A+LIR+ + A
Sbjct: 191 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASAIVDKYIGESARLIREMFAYA- 249
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 250 ---REHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG------ 298
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEK 303
+ +I+ N TL L+R GR+++
Sbjct: 299 --QTKVIMATNRPDTLDPALLRAGRLDR 324
>gi|433638558|ref|YP_007284318.1| AAA+ family ATPase [Halovivax ruber XH-70]
gi|433290362|gb|AGB16185.1| AAA+ family ATPase [Halovivax ruber XH-70]
Length = 727
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 18/154 (11%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 214
N P + ++G G GK+ + + +N + + E+ GE K IR+ + A
Sbjct: 504 NTDPPAGVLLYGPPGTGKTLLARALAGETDVNFVQVDGPEVLDRYVGESEKAIRKLFERA 563
Query: 215 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 274
++ +FI+++DA GR G + + V ++V+ L +L GM
Sbjct: 564 ----RQSAPSIIFIDEIDALVGRRGES--HEVTERVVSQLL---------TELDGMR--- 605
Query: 275 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
ENP + ++ N L L+R GR++ P
Sbjct: 606 ENPNLVVLAATNRMDDLDPALLRPGRLDTHVLVP 639
>gi|449548337|gb|EMD39304.1| 26S proteasome regulatory complex ATPase RPT4 [Ceriporiopsis
subvermispora B]
Length = 399
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V A + N + + + + GE A+++R+ + A D +
Sbjct: 183 LYGPPGTGKTLLARAVAATLQTNFLKVVSSAIVDKYIGESARVVREMFGYARD----HEP 238
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + R II+
Sbjct: 239 CVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGRTKIIM 288
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + + + ++ + E IVKL D
Sbjct: 289 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPVNKSGEIDYEAIVKLSDG 348
Query: 338 FPGQSI 343
F G +
Sbjct: 349 FNGADL 354
>gi|388858178|emb|CCF48246.1| probable RPT4-26S proteasome regulatory subunit [Ustilago hordei]
Length = 408
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 183 IKPPKGVLLYGPPGTGKTLLARAVASTLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 241
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 242 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 290
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P + R+ + + + + + E
Sbjct: 291 --KTKIIMATNRPDTLDPALMRPGRIDRKIEIPLPNEQSRLEILKIHTKPVAKKEELDYE 348
Query: 330 DIVKLVDTFPGQSI 343
IVKL D F G +
Sbjct: 349 AIVKLSDGFNGADL 362
>gi|110668654|ref|YP_658465.1| AAA-type ATPase (transitional ATPase homolog) [Haloquadratum
walsbyi DSM 16790]
gi|109626401|emb|CAJ52861.1| AAA-type ATPase (CDC48 subfamily) [Haloquadratum walsbyi DSM 16790]
Length = 765
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 94/214 (43%), Gaps = 33/214 (15%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 214
N P ++G G GK+ + + IN + ++ EL GE K +R+ + A
Sbjct: 521 NTDPPTGALLYGPPGTGKTLLARAIAGEAEINFVEVAGPELLDRYVGESEKAVREVFERA 580
Query: 215 ADIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 273
++ +F +++DA A R GG T V +++V+ L + D T+
Sbjct: 581 ----RQAAPAIIFFDEIDAVAANRAGGGTDSGVGDRVVSQLLTEL-DRITD--------- 626
Query: 274 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED---RIGV----CSGIFRTDNV 326
+P + ++ N T+ + L+R GR+E P R D R + +G DN+
Sbjct: 627 --HPNLVVLAATNRRDTIDSALLRPGRLESHIAVP-RPDAAARRAILEIHLAGKPLADNI 683
Query: 327 PKEDIVKLVDTFPGQSIDFFGA-LRARVYDDEVR 359
++++V G++ + GA + A V D VR
Sbjct: 684 DRDELV-------GKTAGYVGADIEAMVRDASVR 710
>gi|21362836|sp|Q9HRW6.2|PAN1_HALSA RecName: Full=Proteasome-activating nucleotidase 1; Short=PAN 1;
AltName: Full=Proteasomal ATPase 1; AltName:
Full=Proteasome regulatory ATPase 1; AltName:
Full=Proteasome regulatory particle 1
Length = 407
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 16/159 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+ G G GK+ + V ++ + I M+ EL GE AKL+R ++ A D +
Sbjct: 188 LHGPPGTGKTLMAKAVASQTDASFIKMAGSELVHKFIGEGAKLVRDLFQVARD----HEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 244 AVVFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGDIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFR 322
N F L ++R GR ++ P +G IFR
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP--HPNVGGREKIFR 330
>gi|336476337|ref|YP_004615478.1| AAA ATPase [Methanosalsum zhilinae DSM 4017]
gi|335929718|gb|AEH60259.1| AAA family ATPase, CDC48 subfamily [Methanosalsum zhilinae DSM
4017]
Length = 744
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 88/196 (44%), Gaps = 21/196 (10%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 214
N K P + ++G G GK+ + V ++ N I + EL S GE + +R+ +R+A
Sbjct: 479 NTKPPRGIMLFGPPGTGKTLLAKAVASESEANFISIKGPELLSKYVGESERAVRETFRKA 538
Query: 215 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 274
K+ +F +++D+ A R G ++ V+ ++V+ L +L G+ E
Sbjct: 539 ----KQSAPTVVFFDEVDSIAPRRGMSSDSHVSERVVSQIL---------TELDGV---E 582
Query: 275 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTDNVPKEDIV 332
E V I+ N + L+R GR ++ + +P ++ R + S P D V
Sbjct: 583 ELKDVVIVAATNRPDIVDPALLRPGRFDRLIYVRSPDKKSREKIFS--IHLKGKPLSDDV 640
Query: 333 KLVDTFPGQSIDFFGA 348
+ G + D+ GA
Sbjct: 641 D-ISELAGMTEDYVGA 655
>gi|354567825|ref|ZP_08986992.1| AAA ATPase central domain protein [Fischerella sp. JSC-11]
gi|353541499|gb|EHC10966.1| AAA ATPase central domain protein [Fischerella sp. JSC-11]
Length = 504
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 30/201 (14%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
LP+ + L++GI +G GKS + + + + + G L +G GE R R
Sbjct: 256 LPHPRGLLLVGI---QGTGKSLTAKAIAHHWHLPLLRLDVGRLFAGLVGES----ESRTR 308
Query: 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 272
+ + + C L+I+++D +G +++ + +A
Sbjct: 309 QMIQVAEALAPCVLWIDEIDKAFSGLGSKGDAGTTSRVFGTFITWLA------------- 355
Query: 273 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR---IGVCSGIFRTDNVP 327
E+ V ++ T ND L ++R GR ++ ++ PT+E+R V R N+
Sbjct: 356 -EKTSPVFVVSTANDIQALPPEMLRKGRFDEIFFVGLPTQEERKAIFNVHLSRLRAHNIK 414
Query: 328 KEDIVKLVDTFPGQSIDFFGA 348
DI +L P DF GA
Sbjct: 415 SYDIDRLAYETP----DFSGA 431
>gi|145343062|ref|XP_001416285.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576510|gb|ABO94578.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 366
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 112/267 (41%), Gaps = 34/267 (12%)
Query: 148 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 207
K F P +++P + ++G G GKS + G+ I + EL S GE +
Sbjct: 93 KIFSQCP-LRLPTGVLLYGPPGSGKSAMAKAAIVNAGLRSITIKGPELFSKYYGESEATL 151
Query: 208 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA--TLMNIADNPTNV 265
R+ ++ A D C LF ++ ++ A R GGT V ++MVN TL++ ++
Sbjct: 152 RKLFKRAED----AAPCALFFDEFESLAPRRGGTDG-GVTDRMVNQFLTLLDGVES---- 202
Query: 266 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE--DRIGVCSGIFRT 323
L G++ +I + + L+R GR++ + P + R + + R
Sbjct: 203 -LVGVF---------VICATSRPDVVDPALLRPGRLDHLLYLPMPDAIARAKIVRTLTRE 252
Query: 324 DNV-PKEDIVKL-----VDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNS 377
V P D+V + +++F G + F + A V V K + +ER V
Sbjct: 253 IKVAPGVDLVAIAESERMESFSGADLAAFVSECANVAATRVLKTYT-AAVER--GEDVAE 309
Query: 378 KEGPPTFEQPKMTLDKLLEYGRMLVQE 404
PPT E P ++ L L QE
Sbjct: 310 PNAPPTIE-PHDVVEALKRSRASLSQE 335
>gi|375097417|ref|ZP_09743682.1| AAA+ family ATPase [Saccharomonospora marina XMU15]
gi|374658150|gb|EHR52983.1| AAA+ family ATPase [Saccharomonospora marina XMU15]
Length = 744
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 87/200 (43%), Gaps = 23/200 (11%)
Query: 110 MSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVV--VHITKNFLNLPNVKVPLILGIWGG 167
MSS D ++ G SLD+ D + + + V+ + +F L V P + I+G
Sbjct: 469 MSSSDTLATG--GLSLDDVGDMAEVKQSLTETVLWPLRYPDSFARL-GVAPPRGVLIYGP 525
Query: 168 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227
G GK+F + +N + EL GE + +R+ +R AA+ +F
Sbjct: 526 PGNGKTFLVRALAGTGALNVFAVKGAELMDKWVGESERAVRELFRRAAE----AAPSLIF 581
Query: 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 287
++++DA A R G + V +++V A L + + E R +++ +
Sbjct: 582 LDEVDALAPRRGQSADSGVADRVVAALLTEL-------------DGVEPVRDVVVLGATN 628
Query: 288 FSTLYAP-LIRDGRMEKFYW 306
L P L+R GR+E+ +
Sbjct: 629 RPELVDPALLRPGRLERLVY 648
>gi|322368342|ref|ZP_08042911.1| proteasome-activating nucleotidase [Haladaptatus paucihalophilus
DX253]
gi|320552358|gb|EFW94003.1| proteasome-activating nucleotidase [Haladaptatus paucihalophilus
DX253]
Length = 407
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+ G G GK+ + V + I M+ EL GE AKL+R + AA + +
Sbjct: 190 LHGPPGTGKTMLAKAVANRTDATFIKMAGSELVQKFIGEGAKLVRDLFSLAA----EREP 245
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A R T T + V T+M + L M E+ + II
Sbjct: 246 AVIFIDEIDAVASRR--TDSKTSGDAEVQRTMMQL--------LSEMDGFEDRGNIRIIA 295
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L + ++R GR ++ P
Sbjct: 296 ATNRFDMLDSAILRPGRFDRLIEVP 320
>gi|171684681|ref|XP_001907282.1| hypothetical protein [Podospora anserina S mat+]
gi|170942301|emb|CAP67953.1| unnamed protein product [Podospora anserina S mat+]
Length = 390
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + A + GE A+LIR+ + A
Sbjct: 165 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVASAIVDKYIGESARLIREMFGYA- 223
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 224 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 272
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P + R+ + +G+ + + E
Sbjct: 273 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHAAGVAKEGEIDFE 330
Query: 330 DIVKLVDTFPGQSI 343
+VK+ D G +
Sbjct: 331 SVVKMSDGLNGADL 344
>gi|448590085|ref|ZP_21650144.1| proteasome-activating nucleotidase [Haloferax elongans ATCC
BAA-1513]
gi|445735200|gb|ELZ86753.1| proteasome-activating nucleotidase [Haloferax elongans ATCC
BAA-1513]
Length = 405
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 244 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGNIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPT-REDRIGVCSGIFR-----TDNVPKEDIVKLVDT 337
N F L ++R GR ++ P ED + I +D+V E++ +L +
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVPKPNEDGREIIFKIHTRKMNVSDDVDFEELAELAEN 353
Query: 338 FPGQSI 343
G I
Sbjct: 354 ASGADI 359
>gi|322371776|ref|ZP_08046319.1| proteasome-activating nucleotidase [Haladaptatus paucihalophilus
DX253]
gi|320548661|gb|EFW90332.1| proteasome-activating nucleotidase [Haladaptatus paucihalophilus
DX253]
Length = 405
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARQHEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
LFI+++DA A + T T + V T+M + L M E+ + II
Sbjct: 244 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFEDRGEIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|169235453|ref|YP_001688653.1| proteasome-activating nucleotidase [Halobacterium salinarum R1]
gi|167726519|emb|CAP13304.1| proteasome-activating nucleotidase [Halobacterium salinarum R1]
Length = 406
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 16/159 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+ G G GK+ + V ++ + I M+ EL GE AKL+R ++ A D +
Sbjct: 187 LHGPPGTGKTLMAKAVASQTDASFIKMAGSELVHKFIGEGAKLVRDLFQVARD----HEP 242
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 243 AVVFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGDIRIIA 292
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFR 322
N F L ++R GR ++ P +G IFR
Sbjct: 293 ATNRFDMLDRAILRPGRFDRLIEVP--HPNVGGREKIFR 329
>gi|332158080|ref|YP_004423359.1| cell division protein CDC48 [Pyrococcus sp. NA2]
gi|331033543|gb|AEC51355.1| cell division protein CDC48 [Pyrococcus sp. NA2]
Length = 795
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 71/164 (43%), Gaps = 17/164 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 555 LYGPPGTGKTLLAKAVATESEANFIAVRGPEILSKWVGESEKNIREIFRKA----RQAAP 610
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A R GT V ++++N L M +EN V +I
Sbjct: 611 TVIFIDEIDAIAPRR-GTDVNRVTDRIINQLLTE------------MDGIQENTGVVVIA 657
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP 327
N L L+R GR ++ P ++R T N+P
Sbjct: 658 ATNRPDILDPALLRPGRFDRLILVPAPDERARFEIFKVHTRNMP 701
>gi|88807547|ref|ZP_01123059.1| hypothetical protein WH7805_13388 [Synechococcus sp. WH 7805]
gi|88788761|gb|EAR19916.1| hypothetical protein WH7805_13388 [Synechococcus sp. WH 7805]
Length = 499
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 89/198 (44%), Gaps = 33/198 (16%)
Query: 158 VPLILGIW--GGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+PL G+ G +G GKS + + + + G L SG G A R R
Sbjct: 258 LPLPRGVLLVGPQGTGKSLTARAIAHSWSMPLLRLDVGRLFSGLVG--ASEARTR----- 310
Query: 216 DIIKKGKM---CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 272
D+I + + C L+I+++D G G++GG+ T +Q V AT++ +
Sbjct: 311 DMILRAEAMAPCVLWIDEIDKGFGQVGGSDGGT--SQRVLATVLT-------------WM 355
Query: 273 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTD----NV 326
E+ V ++ T N L L+R GR ++ + P+R++R G+ + + ++
Sbjct: 356 AEKRSAVFVVATANGVERLPPELLRKGRFDEIFLLDLPSRDERCGILTLHLQRRRPQLDL 415
Query: 327 PKEDIVKLVDTFPGQSID 344
P +V +++ G ++
Sbjct: 416 PLSTVVDRTESYSGAELE 433
>gi|427729404|ref|YP_007075641.1| AAA ATPase [Nostoc sp. PCC 7524]
gi|427365323|gb|AFY48044.1| AAA+ family ATPase [Nostoc sp. PCC 7524]
Length = 503
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 30/201 (14%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
LP+ + L++GI +G GKS + + + + + G L +G GE R R
Sbjct: 256 LPHPRGLLLVGI---QGTGKSLTAKAIAHHWHLPLLRLDVGRLFAGLVGES----ESRTR 308
Query: 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 272
+ + + C L+I+++D +G +++ + +A
Sbjct: 309 QMIQVAEALAPCVLWIDEIDKAFSGLGSKGDAGTTSRVFGTFITWLA------------- 355
Query: 273 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR---IGVCSGIFRTDNVP 327
E+ V ++ T ND L ++R GR ++ ++ PT+E+R V R N+
Sbjct: 356 -EKTSPVFVVATANDIQALPPEMLRKGRFDEIFFVGLPTQEERKAIFNVHLSRLRPHNLK 414
Query: 328 KEDIVKLVDTFPGQSIDFFGA 348
DI +L P DF GA
Sbjct: 415 NYDIERLAYETP----DFSGA 431
>gi|326676750|ref|XP_003200668.1| PREDICTED: peroxisome biogenesis factor 1-like [Danio rerio]
Length = 1237
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 101/222 (45%), Gaps = 28/222 (12%)
Query: 150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 209
F +LP + +L ++G G GK+ V + G+N I + EL S G + +R
Sbjct: 822 FSSLPLRQCSGVL-LYGAPGTGKTLLAGAVAKESGMNFISIKGPELLSKYIGASEQAVRD 880
Query: 210 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQ-LP 268
++ A ++ K C LF ++ D+ A R G V +++VN L + V+ L
Sbjct: 881 VFQRA----QQAKPCILFFDEFDSLAPRRGHDN-TGVTDRVVNQLLTQL----DGVEGLT 931
Query: 269 GMYNQEENPRVPIIVTGNDFSTLYAP-LIRDGRMEKFYWAPT--REDRIGVCSGIFRTDN 325
G+Y ++ + L P L+R GR++K + P R R+ + + T +
Sbjct: 932 GVY----------VLAASSRPDLIDPALLRPGRLDKSLYCPPPDRAARLEILRAL--THS 979
Query: 326 VPKEDIVKLVDTFPGQSIDFFGA-LRARVYDDEVRKWISEVG 366
VP V L D G + F GA L+A +Y+ ++ S +G
Sbjct: 980 VPLAADVDL-DQIAGATELFTGADLKALLYNAQLEAIHSSLG 1020
>gi|169849566|ref|XP_001831486.1| ATPase [Coprinopsis cinerea okayama7#130]
gi|116507438|gb|EAU90333.1| ATPase [Coprinopsis cinerea okayama7#130]
Length = 396
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V A + N + + + + GE A+++R+ + A
Sbjct: 172 IKPPKGVLLYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARVVREMFGYA- 230
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 231 ---REHEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 277
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVPKE 329
R +I+ N TL L+R GR+++ P R + + + +G + + + E
Sbjct: 278 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHTGPVNKNGEIDYE 337
Query: 330 DIVKLVDTFPGQSI 343
+VKL D F G +
Sbjct: 338 AVVKLSDGFNGADL 351
>gi|15789738|ref|NP_279562.1| proteasome-activating nucleotidase [Halobacterium sp. NRC-1]
gi|10580114|gb|AAG19042.1| ATP-dependent 26S proteinase regulatory subunit 4 homolog
[Halobacterium sp. NRC-1]
Length = 368
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 16/159 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+ G G GK+ + V ++ + I M+ EL GE AKL+R ++ A D +
Sbjct: 149 LHGPPGTGKTLMAKAVASQTDASFIKMAGSELVHKFIGEGAKLVRDLFQVARD----HEP 204
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 205 AVVFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGDIRIIA 254
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFR 322
N F L ++R GR ++ P +G IFR
Sbjct: 255 ATNRFDMLDRAILRPGRFDRLIEVP--HPNVGGREKIFR 291
>gi|383864588|ref|XP_003707760.1| PREDICTED: peroxisome biogenesis factor 1-like [Megachile
rotundata]
Length = 1019
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 77/170 (45%), Gaps = 19/170 (11%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + + + G+N I + EL S G + +R + A + K
Sbjct: 769 LYGMPGTGKTMLAKAIANECGVNLISVKGPELLSKYIGASEESVRNMFERAL----RAKP 824
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C LF ++ D+ A R G + V +++VN L Q+ G+ ++E V ++
Sbjct: 825 CVLFFDEFDSLAPRRGHDST-GVTDRVVNQLL---------TQMDGVEDRE---GVAVVA 871
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCSGIFRTDNVPKEDI 331
+ L + L+R GR++K + P DR + + + + + ED+
Sbjct: 872 ASSRPDLLDSALLRPGRLDKALYCPLPDEADREEILAVLCKAQKIDHEDL 921
>gi|325182391|emb|CCA16844.1| cell division cycle protein 48 putative [Albugo laibachii Nc14]
Length = 854
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 83/188 (44%), Gaps = 26/188 (13%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GKS +++ A+ +N + + + E+ S G+ + IRQ + A +
Sbjct: 617 LYGPSGCGKSLLAKVLAARANVNFVSIKSSEIMSKYFGDSEQAIRQVFARA----RSASP 672
Query: 224 CCLFINDLDAGAGRMGGTTQY-----------TVNNQMVNATLMNIADNPTNVQLPGMYN 272
LF ++ DA A + G Q +V N+++ +T +N D + + G
Sbjct: 673 SILFFDEFDAVACKRFGEAQTKGSDAAAFDGSSVYNRIL-STFLNEMDGIGHAKRSGYQA 731
Query: 273 Q--EENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFR--TDNV 326
Q E +V +I N L LIR GR++K F P +DR I R T +
Sbjct: 732 QKTENRKQVLVIAATNRVDALDQALIRPGRIDKKVFLHYPDLQDR----KAILRLCTARM 787
Query: 327 PKEDIVKL 334
P +D V L
Sbjct: 788 PLKDDVDL 795
>gi|448349621|ref|ZP_21538453.1| proteasome-activating nucleotidase [Natrialba taiwanensis DSM
12281]
gi|448365819|ref|ZP_21554073.1| proteasome-activating nucleotidase [Natrialba aegyptia DSM 13077]
gi|445639414|gb|ELY92525.1| proteasome-activating nucleotidase [Natrialba taiwanensis DSM
12281]
gi|445654428|gb|ELZ07279.1| proteasome-activating nucleotidase [Natrialba aegyptia DSM 13077]
Length = 405
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M E+ + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGEIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|307181554|gb|EFN69115.1| Peroxisome biogenesis factor 1 [Camponotus floridanus]
Length = 326
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 93/202 (46%), Gaps = 25/202 (12%)
Query: 150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 209
F N P +K+ + ++G G GK+ + + + G+N I + EL S G + +R
Sbjct: 120 FKNAP-IKLQSGVLLYGMPGTGKTMLAKAIAGECGVNLISIKGPELLSKYIGVSEESVRN 178
Query: 210 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 269
+ A ++ K C LF ++ D+ A R G + V +++VN L QL G
Sbjct: 179 VFERA----RRAKPCVLFFDEFDSLAPRRGHDST-GVTDRVVNQLL---------TQLDG 224
Query: 270 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE--DRIGVCSGIFRTDNVP 327
+ ++E V ++ + L L+R GR++K P + +R + + + + N+
Sbjct: 225 VEDRE---GVAVVAASSRPDLLDPALLRPGRLDKCLHCPLPDMLEREAIFAVLCDSQNID 281
Query: 328 K-----EDIVKLVDTFPGQSID 344
K +++ +L D F G I+
Sbjct: 282 KAKLDLKELSQLSDGFTGADIN 303
>gi|339627940|ref|YP_004719583.1| Vesicle-fusing ATPase [Sulfobacillus acidophilus TPY]
gi|379007573|ref|YP_005257024.1| Microtubule-severing ATPase [Sulfobacillus acidophilus DSM 10332]
gi|339285729|gb|AEJ39840.1| Vesicle-fusing ATPase [Sulfobacillus acidophilus TPY]
gi|361053835|gb|AEW05352.1| Microtubule-severing ATPase [Sulfobacillus acidophilus DSM 10332]
Length = 488
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 17/153 (11%)
Query: 200 AGEPAKLIRQRYREAADIIKKG--KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN 257
AG A+ +RQ +R+A + K+ + +FI++++ AGR G + +Q +N L
Sbjct: 139 AGVGAQRVRQLFRDARSLAKREGRQSAIIFIDEIEVMAGRRGQHQSHLEYDQTLNQLL-- 196
Query: 258 IADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIG 315
V++ GM E+ R+ +I N L L+R GR ++ P RE R
Sbjct: 197 -------VEMDGMATH-EDVRILVIAATNRADLLDPALMRPGRFDRLVRVDLPDREGREA 248
Query: 316 VCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGA 348
+ + T N P D V L ++ F GA
Sbjct: 249 ILA--LHTQNKPMADDVDLA-VLARETYGFSGA 278
>gi|167520500|ref|XP_001744589.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776920|gb|EDQ90538.1| predicted protein [Monosiga brevicollis MX1]
Length = 388
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 163 IKPPKGCLLYGPPGTGKTLLARAVASNVDANFLKVVSSAIVDKYIGESARLIREMFGYAR 222
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + + G
Sbjct: 223 D----HEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDVLG------ 270
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+V +I+ N TL L+R GR+++ P + R+ + I + ++ E
Sbjct: 271 --KVKMIMATNRPDTLDPALMRPGRLDRKIEIGLPNEQARLDILKIHAQPIAKAGDIDYE 328
Query: 330 DIVKLVDTFPGQSI 343
+VKL D F G +
Sbjct: 329 AVVKLSDGFNGADL 342
>gi|448419856|ref|ZP_21580700.1| proteasome-activating nucleotidase [Halosarcina pallida JCM 14848]
gi|445674770|gb|ELZ27307.1| proteasome-activating nucleotidase [Halosarcina pallida JCM 14848]
Length = 405
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
LFI+++DA A + T T + V T+M + L M +E + II
Sbjct: 244 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGDIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVP 318
>gi|66359630|ref|XP_626993.1| 26S proteasome regulatory subunit S10b like AAA+ ATpase
[Cryptosporidium parvum Iowa II]
gi|46228795|gb|EAK89665.1| 26S proteasome regulatory subunit S10b like AAA+ ATpase
[Cryptosporidium parvum Iowa II]
Length = 406
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 20/191 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + M N + + A + GE A++IR+ + A
Sbjct: 181 IKTPKGVLLYGPPGTGKTLLARAMASSMNCNFMKVVASAIVDKYIGESARVIREMFGYAK 240
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA G+ +Q T ++ + TLM + + QL G +E
Sbjct: 241 D----HQPCVIFMDEIDAIGGKR--FSQGTSADREIQRTLMELLN-----QLDGF---DE 286
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
V II+ N L L+R GR+++ P R+ + S + + + +
Sbjct: 287 LGAVKIIMATNRPDVLDPALLRPGRLDRKVEIPLPNETSRVEILKIHSSKLAKQGEIDFD 346
Query: 330 DIVKLVDTFPG 340
I KL D F G
Sbjct: 347 AICKLCDGFNG 357
>gi|448363225|ref|ZP_21551828.1| proteasome-activating nucleotidase [Natrialba asiatica DSM 12278]
gi|445647194|gb|ELZ00174.1| proteasome-activating nucleotidase [Natrialba asiatica DSM 12278]
Length = 405
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M E+ + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGEIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|399575289|ref|ZP_10769047.1| proteasome-activating nucleotidase [Halogranum salarium B-1]
gi|399239557|gb|EJN60483.1| proteasome-activating nucleotidase [Halogranum salarium B-1]
Length = 401
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 184 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 239
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
LFI+++DA A + T T + V T+M + L M +E + II
Sbjct: 240 AVLFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGEIRIIA 289
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 290 ATNRFDMLDPAILRPGRFDRLIEVP 314
>gi|336274034|ref|XP_003351771.1| hypothetical protein SMAC_00315 [Sordaria macrospora k-hell]
gi|380096051|emb|CCC06098.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 368
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 143 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 201
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 202 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 250
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P + R+ + SG+ ++ E
Sbjct: 251 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHASGVVIEGDIDYE 308
Query: 330 DIVKLVDTFPGQSI 343
+VK+ D G +
Sbjct: 309 SVVKMSDGLNGADL 322
>gi|195398707|ref|XP_002057962.1| GJ15827 [Drosophila virilis]
gi|194150386|gb|EDW66070.1| GJ15827 [Drosophila virilis]
Length = 397
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEMDYEAIVKLSDN 345
Query: 338 FPGQSI 343
F G +
Sbjct: 346 FNGADL 351
>gi|336252474|ref|YP_004595581.1| AAA family ATPase [Halopiger xanaduensis SH-6]
gi|335336463|gb|AEH35702.1| AAA family ATPase, CDC48 subfamily [Halopiger xanaduensis SH-6]
Length = 743
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 17/150 (11%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V P + ++G G GK+ + V + N I + +L S GE K IRQ +R+A
Sbjct: 493 VDPPAGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKAR 552
Query: 216 DIIKKGKMCCLFINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 274
+ +F ++LDA A GR GG T V+ ++VN L +L G+ + E
Sbjct: 553 QV----SPTVIFFDELDALAPGRGGGETGSNVSERVVNQLL---------TELDGLEDME 599
Query: 275 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 304
+ V +I N + L+R GR ++
Sbjct: 600 D---VMVIGATNRPDMIDPALLRSGRFDRL 626
>gi|300711801|ref|YP_003737615.1| proteasome-activating nucleotidase [Halalkalicoccus jeotgali B3]
gi|448295487|ref|ZP_21485553.1| proteasome-activating nucleotidase [Halalkalicoccus jeotgali B3]
gi|299125484|gb|ADJ15823.1| proteasome-activating nucleotidase [Halalkalicoccus jeotgali B3]
gi|445583944|gb|ELY38270.1| proteasome-activating nucleotidase [Halalkalicoccus jeotgali B3]
Length = 403
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R + ++ + +
Sbjct: 187 LYGPPGTGKTMLAKAVANETDATFIKMAGSELVHKFIGEGAKLVRDLF----EVARSHEP 242
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
LFI+++DA A + T T + V T+M + L M E+ V II
Sbjct: 243 AVLFIDEIDAIASKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGEVRIIA 292
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 293 ATNRFDMLDRAILRPGRFDRLIEVP 317
>gi|383856518|ref|XP_003703755.1| PREDICTED: 26S protease regulatory subunit 10B-like [Megachile
rotundata]
Length = 393
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 176 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 231
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 232 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 281
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + + I + + E +VKL D
Sbjct: 282 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPISKHGEIDYEAVVKLSDG 341
Query: 338 FPGQSI 343
F G +
Sbjct: 342 FNGADL 347
>gi|354611822|ref|ZP_09029778.1| Proteasome-activating nucleotidase [Halobacterium sp. DL1]
gi|353196642|gb|EHB62144.1| Proteasome-activating nucleotidase [Halobacterium sp. DL1]
Length = 405
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+ G G GK+ + V A+ I M+ EL GE AKL+R ++ A D +
Sbjct: 187 LHGPPGTGKTLMAKAVAAQTDATFIKMAGSELVHKFIGEGAKLVRDLFQVARD----HEP 242
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 243 AVVFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGDIRIIA 292
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 293 ATNRFDMLDRAILRPGRFDRLIEVP 317
>gi|396081648|gb|AFN83263.1| 26S proteasome regulatory subunit 10 [Encephalitozoon romaleae
SJ-2008]
Length = 391
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 79/153 (51%), Gaps = 14/153 (9%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V+ P + ++G G GK+ +V A M +N + + + L GE +++IR+ + A
Sbjct: 166 VRAPKGVLLYGPPGTGKTLLARIVAATMDVNFLKVVSSALIEKYIGESSRMIREMFAYA- 224
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ C +F++++DA G+ + + + +++ V TLM + + QL G +N+ +
Sbjct: 225 ---RRKAPCIIFMDEIDAIGGKR--SRESSSSDREVQRTLMELLN-----QLDG-FNELD 273
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
N V +I+ N L L+R GR+++ P
Sbjct: 274 N--VKVIMATNRPDILDPALLRPGRLDRKIEIP 304
>gi|448359787|ref|ZP_21548436.1| proteasome-activating nucleotidase [Natrialba chahannaoensis JCM
10990]
gi|445641854|gb|ELY94926.1| proteasome-activating nucleotidase [Natrialba chahannaoensis JCM
10990]
Length = 405
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M E+ + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGEIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|448301595|ref|ZP_21491586.1| proteasome-activating nucleotidase [Natronorubrum tibetense GA33]
gi|445583511|gb|ELY37841.1| proteasome-activating nucleotidase [Natronorubrum tibetense GA33]
Length = 405
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M E+ + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGEIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|443316084|ref|ZP_21045544.1| AAA+ family ATPase [Leptolyngbya sp. PCC 6406]
gi|442784315|gb|ELR94195.1| AAA+ family ATPase [Leptolyngbya sp. PCC 6406]
Length = 508
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 96/230 (41%), Gaps = 37/230 (16%)
Query: 125 LDNTLDGLYI-APAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM 183
LDN D L AF DK + LP+ + L++GI +G GKS + +
Sbjct: 233 LDNLKDWLLRRGQAFSDKARQY------GLPHPRGLLLVGI---QGTGKSLTAKAIAHHW 283
Query: 184 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQ 243
+ + + G L +G GE R R+ I + C L+I+++D + G
Sbjct: 284 HLPLLRLDVGRLFAGLVGESES----RTRQMIQISEALAPCILWIDEIDKAFAAVDGRGD 339
Query: 244 YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 303
+N++ + +A E+ V ++ T N+ TL ++R GR ++
Sbjct: 340 GGTSNRVFGTFVTWLA--------------EKTSPVFVVATANNIQTLPPEMLRRGRFDE 385
Query: 304 FYWA--PTREDRIGVCS---GIFRTDNVPKEDIVKLVDTFPGQSIDFFGA 348
++ P++E+R + + R N+ D+ +L P DF GA
Sbjct: 386 IFFVGLPSQEERCAIFNVHLSRLRAHNLQSYDLPRLAYETP----DFSGA 431
>gi|156547510|ref|XP_001603936.1| PREDICTED: 26S protease regulatory subunit 10B [Nasonia
vitripennis]
Length = 393
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 176 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 231
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 232 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 281
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + + I + + E +VKL D
Sbjct: 282 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHANPIAKHGEIDYEAVVKLSDG 341
Query: 338 FPGQSI 343
F G +
Sbjct: 342 FNGADL 347
>gi|289582097|ref|YP_003480563.1| 26S proteasome subunit P45 family [Natrialba magadii ATCC 43099]
gi|448282489|ref|ZP_21473775.1| proteasome-activating nucleotidase [Natrialba magadii ATCC 43099]
gi|289531650|gb|ADD06001.1| 26S proteasome subunit P45 family [Natrialba magadii ATCC 43099]
gi|445576031|gb|ELY30490.1| proteasome-activating nucleotidase [Natrialba magadii ATCC 43099]
Length = 405
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M E+ + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGEIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|448726013|ref|ZP_21708440.1| proteasome-activating nucleotidase [Halococcus morrhuae DSM 1307]
gi|445797032|gb|EMA47516.1| proteasome-activating nucleotidase [Halococcus morrhuae DSM 1307]
Length = 403
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+ G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 187 LHGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----EVAREHEP 242
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M EE V II
Sbjct: 243 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFEERGEVRIIA 292
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 293 ATNRFDMLDRAILRPGRFDRLIEVP 317
>gi|315045474|ref|XP_003172112.1| 26S protease regulatory subunit S10B [Arthroderma gypseum CBS
118893]
gi|311342498|gb|EFR01701.1| 26S protease regulatory subunit S10B [Arthroderma gypseum CBS
118893]
Length = 393
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLDTNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P + R+ V SG+ + E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEVLKIHASGVSMEGEIDFE 333
Query: 330 DIVKLVDTFPGQSI 343
IVK+ D G +
Sbjct: 334 TIVKMSDGLNGADL 347
>gi|124485689|ref|YP_001030305.1| proteasome-activating nucleotidase [Methanocorpusculum labreanum Z]
gi|124363230|gb|ABN07038.1| 26S proteasome subunit P45 family [Methanocorpusculum labreanum Z]
Length = 429
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 12/147 (8%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V G+ + M+ EL GE A+L+R + A D+ +K
Sbjct: 205 LYGPPGTGKTLIAKAVANNAGVPFLRMAGSELVHKYIGEGAQLVRDLFEMARDLAEKNNG 264
Query: 224 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282
+FI+++DA G+ R T T + V TLM + ++ G +N N R I+
Sbjct: 265 VVVFIDEIDAVGSMR---TNDGTSGSAEVQRTLMQLL-----AEMDG-FNNRGNIR--IM 313
Query: 283 VTGNDFSTLYAPLIRDGRMEKFYWAPT 309
N L A L+R GR ++ P
Sbjct: 314 AATNRPDMLDAALLRPGRFDRLIKIPA 340
>gi|448739676|ref|ZP_21721688.1| proteasome-activating nucleotidase [Halococcus thailandensis JCM
13552]
gi|445799295|gb|EMA49676.1| proteasome-activating nucleotidase [Halococcus thailandensis JCM
13552]
Length = 403
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+ G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 187 LHGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----EVAREHEP 242
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M EE V II
Sbjct: 243 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFEERGEVRIIA 292
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 293 ATNRFDMLDRAILRPGRFDRLIEVP 317
>gi|164424303|ref|XP_958860.2| hypothetical protein NCU07367 [Neurospora crassa OR74A]
gi|157070458|gb|EAA29624.2| hypothetical protein NCU07367 [Neurospora crassa OR74A]
gi|336464029|gb|EGO52269.1| hypothetical protein NEUTE1DRAFT_118706 [Neurospora tetrasperma
FGSC 2508]
gi|350296111|gb|EGZ77088.1| 26S proteasome subunit P45 [Neurospora tetrasperma FGSC 2509]
Length = 390
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 165 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 223
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 224 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 272
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P + R+ + SG+ ++ E
Sbjct: 273 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHASGVVIEGDIDYE 330
Query: 330 DIVKLVDTFPGQSI 343
+VK+ D G +
Sbjct: 331 SVVKMSDGLNGADL 344
>gi|435846218|ref|YP_007308468.1| Proteasome-activating nucleotidase [Natronococcus occultus SP4]
gi|433672486|gb|AGB36678.1| Proteasome-activating nucleotidase [Natronococcus occultus SP4]
Length = 405
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M E+ + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGEIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|388258720|ref|ZP_10135895.1| putative ATPase [Cellvibrio sp. BR]
gi|387937479|gb|EIK44035.1| putative ATPase [Cellvibrio sp. BR]
Length = 493
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 81/194 (41%), Gaps = 34/194 (17%)
Query: 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 219
L+LG+ GG GKS + V G+ + M G L + GE + REA +
Sbjct: 271 LLLGVQGG---GKSLAAKAVAGLWGLPLMRMDVGALYNKFHGETER----NLREALKLAD 323
Query: 220 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 279
C L++++++ G + G + Q + TL+ + E RV
Sbjct: 324 AMSPCVLWLDEIEKGMAQDGNDNGVS---QRLLGTLLT-------------WMAERRSRV 367
Query: 280 PIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIF------RTDNVPKEDIVK 333
I+ T ND S L LIR GR+++ ++ E V IF R + + D+++
Sbjct: 368 FIVATSNDISRLPPELIRKGRLDEIFFVDLPE--AAVRQDIFAIHLRKRGCDAQQFDLLR 425
Query: 334 LVDT---FPGQSID 344
L D F G I+
Sbjct: 426 LADASDGFSGSEIE 439
>gi|448355430|ref|ZP_21544182.1| proteasome-activating nucleotidase [Natrialba hulunbeirensis JCM
10989]
gi|445635583|gb|ELY88751.1| proteasome-activating nucleotidase [Natrialba hulunbeirensis JCM
10989]
Length = 405
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M E+ + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGEIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|344338327|ref|ZP_08769259.1| AAA ATPase central domain protein [Thiocapsa marina 5811]
gi|343801609|gb|EGV19551.1| AAA ATPase central domain protein [Thiocapsa marina 5811]
Length = 534
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 23/147 (15%)
Query: 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 219
L+LG+ GG GKS + V + G+ + + G L GE K +R+ AD++
Sbjct: 271 LLLGVQGG---GKSLAAKAVAGRFGVPLLRLDFGALYDKYIGETEKNLRKAL-ATADVMS 326
Query: 220 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 279
C L+I++++ G G V +++ L +A E N RV
Sbjct: 327 P---CVLWIDEIEKGVA--TGAEDDGVGRRVLGTLLTWMA--------------ERNSRV 367
Query: 280 PIIVTGNDFSTLYAPLIRDGRMEKFYW 306
+ T ND S L LIR GR+++ ++
Sbjct: 368 FLTATANDISRLPPELIRKGRIDELFF 394
>gi|296805197|ref|XP_002843423.1| 26S protease regulatory subunit S10B [Arthroderma otae CBS 113480]
gi|238844725|gb|EEQ34387.1| 26S protease regulatory subunit S10B [Arthroderma otae CBS 113480]
Length = 393
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLDTNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P + R+ V SG+ + E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEVLKIHASGVSMEGEIDFE 333
Query: 330 DIVKLVDTFPGQSI 343
IVK+ D G +
Sbjct: 334 TIVKMSDGLNGADL 347
>gi|195447510|ref|XP_002071246.1| GK25687 [Drosophila willistoni]
gi|194167331|gb|EDW82232.1| GK25687 [Drosophila willistoni]
Length = 397
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 286 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALIIAKHGEIDYEAIVKLSDN 345
Query: 338 FPGQSI 343
F G +
Sbjct: 346 FNGADL 351
>gi|124512870|ref|XP_001349791.1| 26S proteasome regulatory subunit, putative [Plasmodium falciparum
3D7]
gi|23615208|emb|CAD52198.1| 26S proteasome regulatory subunit, putative [Plasmodium falciparum
3D7]
Length = 393
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + GE A++IR+ + A
Sbjct: 168 IKTPKGVLLYGPPGTGKTLLARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFNYA- 226
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR +Q T ++ + TLM + ++ L G EE
Sbjct: 227 ---KEHQPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLNH-----LDGF---EE 273
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
V II+ N L L+R GR+++ P + RI + + + + ++ E
Sbjct: 274 LGNVKIIMATNRPDVLDPALVRPGRLDRKIEIPLPNETARIEILKIHANKMTKLGDIDYE 333
Query: 330 DIVKLVDTFPGQSI 343
+ +L D F G +
Sbjct: 334 SVCRLCDGFNGADL 347
>gi|67603252|ref|XP_666536.1| 26S proteasome regulatory subunit [Cryptosporidium hominis TU502]
gi|54657551|gb|EAL36305.1| 26S proteasome regulatory subunit [Cryptosporidium hominis]
Length = 391
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 20/191 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + M N + + A + GE A++IR+ + A
Sbjct: 166 IKTPKGVLLYGPPGTGKTLLARAMASSMNCNFMKVVASAIVDKYIGESARVIREMFGYAK 225
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA G+ +Q T ++ + TLM + + QL G +E
Sbjct: 226 D----HQPCVIFMDEIDAIGGKR--FSQGTSADREIQRTLMELLN-----QLDGF---DE 271
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
V II+ N L L+R GR+++ P R+ + S + + + +
Sbjct: 272 LGAVKIIMATNRPDVLDPALLRPGRLDRKVEIPLPNETSRVEILKIHSSKLAKQGEIDFD 331
Query: 330 DIVKLVDTFPG 340
I KL D F G
Sbjct: 332 AICKLCDGFNG 342
>gi|448319916|ref|ZP_21509404.1| proteasome-activating nucleotidase [Natronococcus amylolyticus DSM
10524]
gi|445606322|gb|ELY60226.1| proteasome-activating nucleotidase [Natronococcus amylolyticus DSM
10524]
Length = 405
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M E+ + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGEIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|435850742|ref|YP_007312328.1| AAA family ATPase, CDC48 subfamily [Methanomethylovorans hollandica
DSM 15978]
gi|433661372|gb|AGB48798.1| AAA family ATPase, CDC48 subfamily [Methanomethylovorans hollandica
DSM 15978]
Length = 743
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 69/161 (42%), Gaps = 18/161 (11%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 214
N P + ++G G GK+ + V ++ N I + EL S GE K +R+ +R+A
Sbjct: 479 NTTPPRGILLFGPPGTGKTMLAKAVASESEANFISIKGPELLSKYVGESEKAVRETFRKA 538
Query: 215 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 274
K+ +F +++DA A G +T V ++V+ L I E
Sbjct: 539 ----KQAAPTVIFFDEIDAMAPERGASTDAHVTERVVSQILTEID------------GVE 582
Query: 275 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR 313
E V +I N + L+R GR ++ + P +E R
Sbjct: 583 ELKDVVVIAATNRPDIIDPALLRPGRFDRLIYVKPPEKEGR 623
>gi|302501592|ref|XP_003012788.1| hypothetical protein ARB_01039 [Arthroderma benhamiae CBS 112371]
gi|327304381|ref|XP_003236882.1| 26S protease regulatory subunit S10B [Trichophyton rubrum CBS
118892]
gi|291176348|gb|EFE32148.1| hypothetical protein ARB_01039 [Arthroderma benhamiae CBS 112371]
gi|326459880|gb|EGD85333.1| 26S protease regulatory subunit S10B [Trichophyton rubrum CBS
118892]
gi|326472718|gb|EGD96727.1| 26S proteasome regulatory subunit [Trichophyton tonsurans CBS
112818]
gi|326482035|gb|EGE06045.1| 26S protease regulatory subunit S10B [Trichophyton equinum CBS
127.97]
Length = 393
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLDTNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P + R+ V SG+ + E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEVLKIHASGVSMEGEIDFE 333
Query: 330 DIVKLVDTFPGQSI 343
IVK+ D G +
Sbjct: 334 TIVKMSDGLNGADL 347
>gi|403225149|gb|AFR24761.1| ATPase AAA family [uncultured Pelagomonas]
Length = 493
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 83/196 (42%), Gaps = 27/196 (13%)
Query: 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADI 217
VP L + G +G GKS + + + + + G L +G GE +R+ R A +
Sbjct: 258 VPRGLLLVGVQGTGKSLTAKAIAHDWQLPLLRLDFGRLFAGIVGESESRVREMIRVAEAL 317
Query: 218 IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 277
C ++I+++D + G N+++ AT + + E+
Sbjct: 318 ----SPCIVWIDEIDKSFNQSEGKGDSGTTNRVL-ATFLT-------------WLSEKTS 359
Query: 278 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR---IGVCSGIFRTDNVPKEDIV 332
+V ++ T N+F L LIR GR ++ ++ P +R V R D+V D+
Sbjct: 360 QVFVVATANNFEVLPLELIRKGRFDEIFFVGLPVESERKQIFEVLLSQLRPDSVQNYDL- 418
Query: 333 KLVDTFPGQSIDFFGA 348
+ ++IDF GA
Sbjct: 419 ---QSLSKKAIDFSGA 431
>gi|423402042|ref|ZP_17379215.1| hypothetical protein ICW_02440 [Bacillus cereus BAG2X1-2]
gi|423477266|ref|ZP_17453981.1| hypothetical protein IEO_02724 [Bacillus cereus BAG6X1-1]
gi|401651941|gb|EJS69501.1| hypothetical protein ICW_02440 [Bacillus cereus BAG2X1-2]
gi|402430893|gb|EJV62966.1| hypothetical protein IEO_02724 [Bacillus cereus BAG6X1-1]
Length = 314
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 83/195 (42%), Gaps = 31/195 (15%)
Query: 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 221
L +G G GK+F V ++ N I + + S +GE K + + + EA +K
Sbjct: 71 LLFYGPPGCGKTFLARAVAGEINANFIHLELQAILSMWSGEAEKNLHEVFEEA----RKT 126
Query: 222 KMCCLFINDLDAGAG---RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 278
K C LFI++LDA G +MG Q T+ NQ++ V++ G + N
Sbjct: 127 KPCILFIDELDAYGGNRQKMGAHHQRTLVNQLL-------------VEMDG--SNSFNEG 171
Query: 279 VPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKED-----I 331
V II N + L R GR F P E+R+ + +T + P+ + +
Sbjct: 172 VYIIGATNTPWYIDPALRRPGRFNSLVFVAPPNNEERLTILE--LKTKDKPRMELQLDFV 229
Query: 332 VKLVDTFPGQSIDFF 346
K + F G + +
Sbjct: 230 SKYAEHFSGADLTYL 244
>gi|423458721|ref|ZP_17435518.1| hypothetical protein IEI_01861 [Bacillus cereus BAG5X2-1]
gi|401145884|gb|EJQ53405.1| hypothetical protein IEI_01861 [Bacillus cereus BAG5X2-1]
Length = 314
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 83/195 (42%), Gaps = 31/195 (15%)
Query: 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 221
L +G G GK+F V ++ N I + + S +GE K + + + EA +K
Sbjct: 71 LLFYGPPGCGKTFLARAVAGEINANFIHLELQAILSMWSGEAEKNLHEVFEEA----RKT 126
Query: 222 KMCCLFINDLDAGAG---RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 278
K C LFI++LDA G +MG Q T+ NQ++ V++ G + N
Sbjct: 127 KPCILFIDELDAYGGNRQKMGAHHQRTLVNQLL-------------VEMDG--SNSFNEG 171
Query: 279 VPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKED-----I 331
V II N + L R GR F P E+R+ + +T + P+ + +
Sbjct: 172 VYIIGATNTPWYIDPALRRPGRFNSLVFVAPPNNEERLTILE--LKTKDKPRMELQLDFV 229
Query: 332 VKLVDTFPGQSIDFF 346
K + F G + +
Sbjct: 230 SKYAEHFSGADLTYL 244
>gi|336368315|gb|EGN96658.1| hypothetical protein SERLA73DRAFT_75535 [Serpula lacrymans var.
lacrymans S7.3]
gi|336381126|gb|EGO22278.1| hypothetical protein SERLADRAFT_409838 [Serpula lacrymans var.
lacrymans S7.9]
Length = 399
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V A + N + + + + GE A+++R+ + A
Sbjct: 175 IKAPKGVLLYGPPGTGKTLLARAVAATLHTNFLKVVSSAIVDKYIGESARVVREMFGYAR 234
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 235 D----HEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG------ 282
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+ +I+ N TL L+R GR+++ P + R+ + + + + + E
Sbjct: 283 --KTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPVNKGGEIDYE 340
Query: 330 DIVKLVDTFPGQSI 343
IVKL D F G +
Sbjct: 341 AIVKLSDAFNGADL 354
>gi|401826861|ref|XP_003887523.1| ATP-dependent 26S proteasome regulatory subunit [Encephalitozoon
hellem ATCC 50504]
gi|392998529|gb|AFM98542.1| ATP-dependent 26S proteasome regulatory subunit [Encephalitozoon
hellem ATCC 50504]
Length = 391
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 79/153 (51%), Gaps = 14/153 (9%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V+ P + ++G G GK+ +V A M +N + + + L GE +++IR+ + A
Sbjct: 166 VRAPKGVLLYGPPGTGKTLLARIVAATMDVNFLKVVSSALIEKYIGESSRMIREMFAYA- 224
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ C +F++++DA G+ + + + +++ V TLM + + QL G +N+ +
Sbjct: 225 ---RRKAPCIIFMDEIDAIGGKR--SRESSSSDREVQRTLMELLN-----QLDG-FNELD 273
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
N V +I+ N L L+R GR+++ P
Sbjct: 274 N--VKVIMATNRPDILDPALLRPGRLDRKIEIP 304
>gi|334120952|ref|ZP_08495028.1| AAA ATPase central domain protein [Microcoleus vaginatus FGP-2]
gi|333455671|gb|EGK84314.1| AAA ATPase central domain protein [Microcoleus vaginatus FGP-2]
Length = 545
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 23/164 (14%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
+PN K L++GI +G GKS + + ++ + + + G L G GE +RQ +
Sbjct: 282 IPNPKGVLLVGI---QGTGKSLSAKTIASEWRLPLLRLDTGRLFGGVVGESESRVRQMIQ 338
Query: 213 EAADIIKKGKMCCLFINDLDAGAGRM-GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 271
A I C L+I+++D G + G+ + ++ V +L+ +
Sbjct: 339 LAEAIAP----CVLWIDEIDKAFGNIISGSDGDSGTSRRVFGSLIT-------------W 381
Query: 272 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 313
QE+ V I+ T N+ L A L+R GR ++ ++ P+ +R
Sbjct: 382 MQEKTSPVFIVATANNVRILPAELLRKGRFDEIFFLNLPSESER 425
>gi|292655013|ref|YP_003534910.1| proteasome-activating nucleotidase A [Haloferax volcanii DS2]
gi|433423638|ref|ZP_20406268.1| proteasome-activating nucleotidase [Haloferax sp. BAB2207]
gi|448542666|ref|ZP_21624751.1| proteasome-activating nucleotidase [Haloferax sp. ATCC BAA-646]
gi|448549986|ref|ZP_21628591.1| proteasome-activating nucleotidase [Haloferax sp. ATCC BAA-645]
gi|448572170|ref|ZP_21640163.1| proteasome-activating nucleotidase [Haloferax lucentense DSM 14919]
gi|448596896|ref|ZP_21654034.1| proteasome-activating nucleotidase [Haloferax alexandrinus JCM
10717]
gi|291372419|gb|ADE04646.1| proteasome-activating nucleotidase A [Haloferax volcanii DS2]
gi|432198308|gb|ELK54605.1| proteasome-activating nucleotidase [Haloferax sp. BAB2207]
gi|445706946|gb|ELZ58815.1| proteasome-activating nucleotidase [Haloferax sp. ATCC BAA-646]
gi|445713034|gb|ELZ64815.1| proteasome-activating nucleotidase [Haloferax sp. ATCC BAA-645]
gi|445720762|gb|ELZ72433.1| proteasome-activating nucleotidase [Haloferax lucentense DSM 14919]
gi|445740777|gb|ELZ92282.1| proteasome-activating nucleotidase [Haloferax alexandrinus JCM
10717]
Length = 405
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 244 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGNIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVP 318
>gi|156102603|ref|XP_001616994.1| 26S proteasome regulatory subunit [Plasmodium vivax Sal-1]
gi|148805868|gb|EDL47267.1| 26S proteasome regulatory subunit, putative [Plasmodium vivax]
Length = 393
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + GE A++IR+ + A
Sbjct: 168 IKTPKGVLLYGPPGTGKTLLARAMASNINCNFMRIVVSAIVDKYIGESARIIREMFTYA- 226
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR +Q T ++ + TLM + ++ L G EE
Sbjct: 227 ---KEHQPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLNH-----LDGF---EE 273
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
V II+ N L LIR GR+++ P + RI + + + + + E
Sbjct: 274 LGNVKIIMATNRPDVLDPALIRPGRLDRKIEIPLPNETARIEILKIHANKMTKLGEIDYE 333
Query: 330 DIVKLVDTFPGQSI 343
+ +L D F G +
Sbjct: 334 SVCRLCDGFNGADL 347
>gi|443897510|dbj|GAC74850.1| 26S proteasome regulatory complex [Pseudozyma antarctica T-34]
Length = 408
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 183 IKPPKGVLLYGPPGTGKTLLARAVASTLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 241
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 242 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 290
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+ +I+ N TL L+R GR+++ P + R+ + + + + + E
Sbjct: 291 --KTKVIMATNRPDTLDPALMRPGRIDRKIEIPLPNEQSRLEILKIHTKPVAKKEELDYE 348
Query: 330 DIVKLVDTFPGQSI 343
IVKL D F G +
Sbjct: 349 AIVKLSDGFNGADL 362
>gi|336121896|ref|YP_004576671.1| proteasome-activating nucleotidase [Methanothermococcus okinawensis
IH1]
gi|334856417|gb|AEH06893.1| Proteasome-activating nucleotidase [Methanothermococcus okinawensis
IH1]
Length = 408
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 77/179 (43%), Gaps = 16/179 (8%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + + I + EL GE AKL++ ++ A K+
Sbjct: 188 LYGPPGTGKTLLAKAVAHETNASFIKIVGSELVKKFIGEGAKLVKDVFKLA----KEKAP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +FI+++DA A R T T ++ V TLM + L M E V II
Sbjct: 244 CIIFIDEIDAVASRR--TESLTGGDREVQRTLMQL--------LAEMDGFESKGDVKIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPG 340
N L ++R GR ++ AP+ E R+ + + N+ D+ K+ G
Sbjct: 294 ATNRPDILDPAILRPGRFDRIIEVPAPSEEGRLEILKIHTKNMNLKHVDLKKIAKMTEG 352
>gi|24745880|dbj|BAC23035.1| 26S proteasome AAA-ATPase subunit RPT4a [Solanum tuberosum]
gi|76160929|gb|ABA40428.1| 26S proteasome AAA-ATPase subunit RPT4a-like protein [Solanum
tuberosum]
Length = 398
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 90/191 (47%), Gaps = 20/191 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYAR 228
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 274
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P + R+ + +GI + + E
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYE 334
Query: 330 DIVKLVDTFPG 340
+KL + F G
Sbjct: 335 AAIKLAEGFNG 345
>gi|435848784|ref|YP_007311034.1| AAA family ATPase, CDC48 subfamily [Natronococcus occultus SP4]
gi|433675052|gb|AGB39244.1| AAA family ATPase, CDC48 subfamily [Natronococcus occultus SP4]
Length = 742
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 131/334 (39%), Gaps = 79/334 (23%)
Query: 87 TRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ-----GLRQYSLDNTLDGLYIAPAFMDK 141
TRG + D + A M TH V + + +++ LR+Y + LD I P+ +D+
Sbjct: 370 TRGMPLSDDVDLAHMADETHGFVGADIESLTKEAAMKALRRYLPEIDLDEEDIPPSLIDR 429
Query: 142 VVVH---------------ITKNFLNLP-------------------NVKVPL------- 160
++V + + + LP +V+ PL
Sbjct: 430 MIVKREDFRGALNEVEPSAMREVLVELPKISWDDVGGLQTAKDQVQESVEWPLNNPERFD 489
Query: 161 ILGI--------WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
LGI +G G GK+ + V + N I + +L S GE K IRQ +R
Sbjct: 490 RLGIDPPAGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFR 549
Query: 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 272
+A + +F ++LDA A GG T V+ ++VN L +L G+
Sbjct: 550 KARQV----SPTVIFFDELDALAPGRGGETGSNVSERVVNQLL---------TELDGL-- 594
Query: 273 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNV 326
EE V +I N + L+R GR ++ P E R + G +V
Sbjct: 595 -EEMENVMVIGATNRPDMIDPALLRSGRFDRLVMIGEPDVEGRERILDIHTQGTPMAADV 653
Query: 327 PKEDIVKLVDTFPG---QSIDFFGALRARVYDDE 357
++I ++ D + G +SI A+ A D+E
Sbjct: 654 NLQEIAEITDGYVGSDLESIAREAAIEALREDEE 687
>gi|448561286|ref|ZP_21634638.1| proteasome-activating nucleotidase [Haloferax prahovense DSM 18310]
gi|448582081|ref|ZP_21645585.1| proteasome-activating nucleotidase [Haloferax gibbonsii ATCC 33959]
gi|448605891|ref|ZP_21658484.1| proteasome-activating nucleotidase [Haloferax sulfurifontis ATCC
BAA-897]
gi|448625274|ref|ZP_21671041.1| proteasome-activating nucleotidase [Haloferax denitrificans ATCC
35960]
gi|445721518|gb|ELZ73186.1| proteasome-activating nucleotidase [Haloferax prahovense DSM 18310]
gi|445731729|gb|ELZ83312.1| proteasome-activating nucleotidase [Haloferax gibbonsii ATCC 33959]
gi|445741214|gb|ELZ92718.1| proteasome-activating nucleotidase [Haloferax sulfurifontis ATCC
BAA-897]
gi|445749036|gb|EMA00482.1| proteasome-activating nucleotidase [Haloferax denitrificans ATCC
35960]
Length = 405
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 244 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGNIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVP 318
>gi|302425218|sp|D4GUJ7.2|PAN1_HALVD RecName: Full=Proteasome-activating nucleotidase 1; Short=PAN 1;
AltName: Full=Proteasomal ATPase 1; AltName:
Full=Proteasome regulatory ATPase 1; AltName:
Full=Proteasome regulatory particle 1
gi|54694989|gb|AAV38126.1| proteasome-activating nucleotidase A [Haloferax volcanii DS2]
Length = 406
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 189 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 244
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 245 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGNIRIIA 294
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 295 ATNRFDMLDPAILRPGRFDRLIEVP 319
>gi|343425001|emb|CBQ68538.1| probable RPT4-26S proteasome regulatory subunit [Sporisorium
reilianum SRZ2]
Length = 408
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 183 IKPPKGVLLYGPPGTGKTLLARAVASTLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 241
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 242 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 290
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+ +I+ N TL L+R GR+++ P + R+ + + + + + E
Sbjct: 291 --KTKVIMATNRPDTLDPALMRPGRIDRKIEIPLPNEQSRLEILKIHTKPVAKKEELDYE 348
Query: 330 DIVKLVDTFPGQSI 343
IVKL D F G +
Sbjct: 349 AIVKLSDGFNGADL 362
>gi|221060877|ref|XP_002262008.1| 26S proteasome regulatory subunit 7 [Plasmodium knowlesi strain H]
gi|193811158|emb|CAQ41886.1| 26S proteasome regulatory subunit 7, putative [Plasmodium knowlesi
strain H]
Length = 441
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + + I + EL GE A+++R+ ++ A K K
Sbjct: 201 LYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARMVRELFQMA----KSKKA 256
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C LFI+++DA G G + + + V T++ I + QL G N+ + +++
Sbjct: 257 CILFIDEVDAIGGSRGDESAH--GDHEVQRTMLEIVN-----QLDGFDNRGN---IKVLM 306
Query: 284 TGNDFSTLYAPLIRDGRMEK 303
N TL + L+R GR+++
Sbjct: 307 ATNRPDTLDSALVRPGRIDR 326
>gi|383318674|ref|YP_005379515.1| AAA ATPase [Methanocella conradii HZ254]
gi|379320044|gb|AFC98996.1| AAA family ATPase, CDC48 subfamily [Methanocella conradii HZ254]
Length = 740
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 76/166 (45%), Gaps = 16/166 (9%)
Query: 148 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 207
K+ + + + P + ++G G GK+ + V + N I + E+ S GE K +
Sbjct: 476 KDVFEVTHTRAPKGILVFGPPGTGKTLLAKAVANESEANFISVKGPEVLSKWVGESEKAV 535
Query: 208 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 267
R+ +R+A ++ +F +++DA A GG+ V ++V+ L +L
Sbjct: 536 RETFRKA----RQSAPTIIFFDEIDAIAPTRGGSFDSHVTERVVSQLL---------TEL 582
Query: 268 PGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 313
G+ EE V ++ N + L+R GR+++ + P ++R
Sbjct: 583 DGL---EELHSVVVMAATNRPDMVDTALLRPGRLDRLLYIPPPDER 625
>gi|340721035|ref|XP_003398932.1| PREDICTED: peroxisome biogenesis protein 1-like [Bombus terrestris]
Length = 1028
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 19/165 (11%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + + + G+N I + EL S G + +R + A + K
Sbjct: 778 LYGMPGTGKTMLAKAIANECGVNLISVKGPELLSKYIGVSEESVRNVFERAL----RAKP 833
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C LF ++ D+ A R G + V +++VN L Q+ G+ ++E V ++
Sbjct: 834 CVLFFDEFDSLAPRRGHDST-GVTDRVVNQLL---------TQMDGVEDRE---GVAVVA 880
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNV 326
+ L L+R GR++K + P DR + + RT N+
Sbjct: 881 ASSRPDLLDPALLRPGRLDKALYCPLPNEVDREEILIALCRTQNI 925
>gi|367020878|ref|XP_003659724.1| hypothetical protein MYCTH_2076503 [Myceliophthora thermophila ATCC
42464]
gi|347006991|gb|AEO54479.1| hypothetical protein MYCTH_2076503 [Myceliophthora thermophila ATCC
42464]
Length = 391
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P + R+ + +G+ + + E
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHAAGVAKEGEIDFE 331
Query: 330 DIVKLVDTFPGQSI 343
IVK+ D G +
Sbjct: 332 SIVKMSDGLNGADL 345
>gi|88602110|ref|YP_502288.1| ATPase AAA [Methanospirillum hungatei JF-1]
gi|88187572|gb|ABD40569.1| AAA family ATPase, CDC48 subfamily [Methanospirillum hungatei JF-1]
Length = 801
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 97/229 (42%), Gaps = 27/229 (11%)
Query: 129 LDGLYIAPAFMDKVV---VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI 185
++GL ++K++ VH F L +K P + ++G G GK+ + V AK +
Sbjct: 456 VEGLDAEKHEIEKIIEWPVHRRDAFEKL-KIKPPKGILLFGPPGTGKTLLAKAVAAKSRM 514
Query: 186 NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYT 245
N I + EL S GE K +R+ +R+A ++ +F +++DA + G Q
Sbjct: 515 NFISVKGPELLSKWVGESEKQVREAFRKA----RQSAPSIIFFDEIDALVQQRG---QQH 567
Query: 246 VNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 305
N+++ + L I L M EE V I+ N L L+R GR+EK
Sbjct: 568 TNSRVGESVLSQI--------LTEMDGVEELSGVVIMAATNRPDLLDPALLRPGRLEKHI 619
Query: 306 W--APTREDRIGVCS------GIFRTDNVPKEDIVKLVDTFPGQSIDFF 346
+ P R + G +N+ + I + + F G I F
Sbjct: 620 YIKPPNLNGRKAILKIYLRDLGTLLDENIDYDAIAREMRYFVGADIHAF 668
>gi|357509249|ref|XP_003624913.1| Cell division control protein-like protein [Medicago truncatula]
gi|124361206|gb|ABN09178.1| AAA ATPase, central region [Medicago truncatula]
gi|355499928|gb|AES81131.1| Cell division control protein-like protein [Medicago truncatula]
Length = 560
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 76/176 (43%), Gaps = 15/176 (8%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P L ++G G GK+ + + G N ++S + S AGE + +R+ + EA+
Sbjct: 51 LKFPRGLLLYGPPGTGKTSLVRAIVEECGANLTIISPNTVNSALAGESERNLREAFSEAS 110
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
GK +FI+++D R + V TLM+ ++ T+
Sbjct: 111 SHAALGKSSVIFIDEIDGLCPRRDSIRELDVRIASQLCTLMD-SNKATS----------S 159
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGR--MEKFYWAPTREDRIGVCSGIFRTDNVPKE 329
NP V ++ + N + L R GR +E P E+R+ + T +P++
Sbjct: 160 NPGVVVVASTNRVDAIDPALRRYGRFDIETEVTVPNEEERLQILE--LYTRKIPRD 213
>gi|448616093|ref|ZP_21664803.1| proteasome-activating nucleotidase [Haloferax mediterranei ATCC
33500]
gi|445750748|gb|EMA02185.1| proteasome-activating nucleotidase [Haloferax mediterranei ATCC
33500]
Length = 405
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 244 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGNIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVP 318
>gi|448613304|ref|ZP_21663184.1| proteasome-activating nucleotidase [Haloferax mucosum ATCC
BAA-1512]
gi|445740201|gb|ELZ91707.1| proteasome-activating nucleotidase [Haloferax mucosum ATCC
BAA-1512]
Length = 405
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 244 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGNIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDPAILRPGRFDRLIEVP 318
>gi|403223916|dbj|BAM42046.1| metallopeptidase [Theileria orientalis strain Shintoku]
Length = 680
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 17/152 (11%)
Query: 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 216
K+P + + G G GK+ + ++ G+ I S E E G A+ IR ++ A
Sbjct: 228 KLPKGILLAGRPGTGKTLLARALASEAGVPFIHASGSEFEEMFVGVGARRIRDLFKTAKT 287
Query: 217 IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 276
I C +FI++LDA + T T M + N V+L G QE
Sbjct: 288 IAP----CIVFIDELDAVGSKRTSTDHNT----------MRMTLNQLLVELDGFAKQEG- 332
Query: 277 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
+ ++ N +L L+R GR++K + P
Sbjct: 333 --IVVLCATNFPESLDPALVRPGRLDKTVYIP 362
>gi|384567624|ref|ZP_10014728.1| AAA+ family ATPase [Saccharomonospora glauca K62]
gi|384523478|gb|EIF00674.1| AAA+ family ATPase [Saccharomonospora glauca K62]
Length = 748
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 89/202 (44%), Gaps = 23/202 (11%)
Query: 110 MSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVV--VHITKNFLNLPNVKVPLILGIWGG 167
MS+ D ++ G +LD+ D + + + V+ + +F L + P + ++G
Sbjct: 474 MSTTDTLATG--GITLDDVGDMAEVKQSLTEAVLWPLRYPDSFARL-GIAPPRGVLLYGP 530
Query: 168 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227
G GK+F + +N + EL GE + +R+ +R AA+ +F
Sbjct: 531 PGNGKTFLVRALAGTGALNVFSVKGAELLDKWVGESERAVRELFRRAAE----AAPALIF 586
Query: 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 287
++++DA A R G ++ ++++V A L + + E R ++V +
Sbjct: 587 LDEVDALAPRRGQSSDSGASDRVVAALLTEL-------------DGVEPLRDVVVVGATN 633
Query: 288 FSTLYAP-LIRDGRMEKFYWAP 308
L P L+R GR+E+ + P
Sbjct: 634 RPELVDPALLRPGRLERLIYVP 655
>gi|254387365|ref|ZP_05002615.1| ATPase [Streptomyces sp. Mg1]
gi|194346160|gb|EDX27126.1| ATPase [Streptomyces sp. Mg1]
Length = 521
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 84/205 (40%), Gaps = 34/205 (16%)
Query: 151 LNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 210
L +++ P + + G G GKS + + A+ + + G + GE R
Sbjct: 261 LRATDLRPPRGVLLVGVPGCGKSLSAKAIAAQWQLPLYRLDMGSIHGKYLGESEG----R 316
Query: 211 YREAADIIKKGKMCCLFINDLD---AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 267
+REA + + C L+I++++ AGAG G Q + +
Sbjct: 317 FREALETADRVAPCVLWIDEIEKGLAGAGDGTGVPQRIIGQFL----------------- 359
Query: 268 PGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-----APTREDRIGVCSGIFR 322
+ QE R ++ T ND +L L+R GR ++ ++ A RE+ IG+ +
Sbjct: 360 --FWLQESQSRSFVVATANDVRSLPPELLRKGRFDELFFVDLPDAQDREEIIGIYYRRYL 417
Query: 323 TDNVPKEDIVKLVDT---FPGQSID 344
+ E + +LVD F G I+
Sbjct: 418 KTDPDPEQLARLVDLSEGFAGSDIE 442
>gi|448734331|ref|ZP_21716557.1| proteasome-activating nucleotidase [Halococcus salifodinae DSM
8989]
gi|445800379|gb|EMA50734.1| proteasome-activating nucleotidase [Halococcus salifodinae DSM
8989]
Length = 404
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+ G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 187 LHGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----EVAREHEP 242
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 243 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 292
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 293 ATNRFDMLDRAILRPGRFDRLIEVP 317
>gi|448323197|ref|ZP_21512661.1| ATPase AAA [Natronococcus amylolyticus DSM 10524]
gi|445600383|gb|ELY54396.1| ATPase AAA [Natronococcus amylolyticus DSM 10524]
Length = 742
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 108/272 (39%), Gaps = 70/272 (25%)
Query: 87 TRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ-----GLRQYSLDNTLDGLYIAPAFMDK 141
TRG + D + A M TH V + + +++ LR+Y + LD I P+ +D+
Sbjct: 370 TRGMPLSDDVDLAHMADETHGFVGADIESLTKEAAMKALRRYLPEIDLDEEDIPPSLIDR 429
Query: 142 VVVH---------------ITKNFLNLP-------------------NVKVPL------- 160
++V + + + LP +V+ PL
Sbjct: 430 MIVKRQDFRGALNEVEPSAMREVLVELPKISWDDVGGLQDAQEQVQESVEWPLNNPDRFE 489
Query: 161 ILGI--------WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
LGI +G G GK+ + V + N I + +L S GE K IRQ +R
Sbjct: 490 RLGIDPPAGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFR 549
Query: 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 272
+A ++ +F ++LDA A GG T V+ ++VN L +L G+
Sbjct: 550 KA----RQVSPTVIFFDELDALAPGRGGETGSNVSERVVNQLL---------TELDGL-- 594
Query: 273 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 304
EE V +I N + L+R GR ++
Sbjct: 595 -EEMENVMVIGATNRPDMIDPALLRSGRFDRL 625
>gi|385802942|ref|YP_005839342.1| proteasome-activating nucleotidase [Haloquadratum walsbyi C23]
gi|339728434|emb|CCC39586.1| proteasome-activating nucleotidase [Haloquadratum walsbyi C23]
Length = 405
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 36/194 (18%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M +E V II
Sbjct: 244 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGDVRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP--------------TREDRIGVCSGIFRTDNVPKE 329
N F L ++R GR ++ P TRE + +DNV E
Sbjct: 294 ATNRFDMLDEAILRPGRFDRLIEVPKPGIEGRKIIFQIHTREMNV--------SDNVEFE 345
Query: 330 DIVKLVDTFPGQSI 343
+ ++ D G I
Sbjct: 346 QLAEMADDASGADI 359
>gi|308470578|ref|XP_003097522.1| CRE-RPT-4 protein [Caenorhabditis remanei]
gi|308240039|gb|EFO83991.1| CRE-RPT-4 protein [Caenorhabditis remanei]
Length = 492
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 99/218 (45%), Gaps = 29/218 (13%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A++IR+ + A D +
Sbjct: 275 LFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 330
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + QL G + +V +I+
Sbjct: 331 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DSLGKVKVIM 380
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + + I + + E +VKL D
Sbjct: 381 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDG 440
Query: 338 FPGQSID-------FFG--ALRARVYDDEVRKWISEVG 366
F + F A R V D++ K + +VG
Sbjct: 441 FSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKVG 478
>gi|154151138|ref|YP_001404756.1| ATPase AAA [Methanoregula boonei 6A8]
gi|153999690|gb|ABS56113.1| AAA family ATPase, CDC48 subfamily [Methanoregula boonei 6A8]
Length = 801
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 21/172 (12%)
Query: 143 VVHITKNFLNLPNV------KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196
++ I + L P + K P + ++G G GK+ + + +K +N I + EL
Sbjct: 466 LIKIIEGRLRYPKIFEKLDYKPPRGILLFGPPGTGKTLLAKGIASKRQLNFISVKGPELL 525
Query: 197 SGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLM 256
S G+ K +R+ +R+A ++ C +F +++DA + G T + V + +
Sbjct: 526 SKGVGDSEKHVREAFRKA----RQSAPCIIFFDEIDALFPKRGTVADNTHVTESVLSQFL 581
Query: 257 NIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
+L G+ EE V +I N L L+R GR+EK + P
Sbjct: 582 T--------ELDGI---EELKEVFVIGATNRPDLLDPALLRPGRLEKHLYIP 622
>gi|71987372|ref|NP_001022114.1| Protein RPT-4, isoform b [Caenorhabditis elegans]
gi|373218667|emb|CCD62358.1| Protein RPT-4, isoform b [Caenorhabditis elegans]
Length = 398
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 100/218 (45%), Gaps = 29/218 (13%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A++IR+ + A D +
Sbjct: 181 LFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 236
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + QL G + +V +I+
Sbjct: 237 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DSLGKVKVIM 286
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + + I + + E +VKL D
Sbjct: 287 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDG 346
Query: 338 FPGQSIDFFG------ALRAR---VYDDEVRKWISEVG 366
F + A+RA V D++ K + +VG
Sbjct: 347 FSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKVG 384
>gi|409357579|ref|ZP_11235957.1| ATP-dependent zinc metalloprotease FtsH 2 [Dietzia alimentaria 72]
Length = 743
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 87/194 (44%), Gaps = 25/194 (12%)
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVV--VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCE 177
L +LD+ D + + A + V+ + ++F L V+ P + ++G G GK+F
Sbjct: 475 LGAITLDDVGDMVEVRQALTETVLWPLQHRESFERL-GVQPPRGVLLYGPPGCGKTFIVR 533
Query: 178 LVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 237
+ A + M+ GEL G K +R +R A D +F++++DA A R
Sbjct: 534 ALAASGRLTVHMVKGGELMDKWVGSSEKAVRDLFRRARD----SAPSLVFLDEIDALAPR 589
Query: 238 MGGTTQYTVNNQMVNATLMNI--ADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP- 294
G ++ V +++V A L + A+ NV + G N+ E L P
Sbjct: 590 RGQSSDSGVGDRVVAALLTELDGAEPLDNVVVLGATNRPE---------------LIDPA 634
Query: 295 LIRDGRMEKFYWAP 308
L+R GR+E+ + P
Sbjct: 635 LLRPGRLERLVFVP 648
>gi|71987364|ref|NP_001022113.1| Protein RPT-4, isoform a [Caenorhabditis elegans]
gi|21264496|sp|O17071.2|PRS10_CAEEL RecName: Full=Probable 26S protease regulatory subunit 10B;
AltName: Full=26S proteasome AAA-ATPase subunit rpt-4;
AltName: Full=Proteasome regulatory particle ATPase-like
protein 4
gi|373218666|emb|CCD62357.1| Protein RPT-4, isoform a [Caenorhabditis elegans]
Length = 406
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 99/218 (45%), Gaps = 29/218 (13%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A++IR+ + A D +
Sbjct: 189 LFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 244
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + QL G + +V +I+
Sbjct: 245 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DSLGKVKVIM 294
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + + I + + E +VKL D
Sbjct: 295 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDG 354
Query: 338 FPGQSID-------FFG--ALRARVYDDEVRKWISEVG 366
F + F A R V D++ K + +VG
Sbjct: 355 FSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKVG 392
>gi|389586053|dbj|GAB68782.1| 26S proteasome ATPase subunit [Plasmodium cynomolgi strain B]
Length = 420
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + + I + EL GE A+++R+ ++ A K K
Sbjct: 201 LYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARMVRELFQMA----KSKKA 256
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C LFI+++DA G G + + + V T++ I + QL G N+ + +++
Sbjct: 257 CILFIDEVDAIGGSRGDESAH--GDHEVQRTMLEIVN-----QLDGFDNRGN---IKVLM 306
Query: 284 TGNDFSTLYAPLIRDGRMEK 303
N TL + L+R GR+++
Sbjct: 307 ATNRPDTLDSALVRPGRIDR 326
>gi|383625075|ref|ZP_09949481.1| ATPase AAA [Halobiforma lacisalsi AJ5]
Length = 743
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 17/150 (11%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V P + ++G G GK+ + V + N I + +L S GE K IRQ +R+A
Sbjct: 493 VAPPAGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKA- 551
Query: 216 DIIKKGKMCCLFINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 274
++ +F ++LDA A GR GG T V+ ++VN L +L G+ E
Sbjct: 552 ---RQVSPTVIFFDELDALAPGRGGGETGSNVSERVVNQLL---------TELDGLEEME 599
Query: 275 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 304
+ V +I N + L+R GR ++
Sbjct: 600 D---VMVIGATNRPDMIDPALLRSGRFDRL 626
>gi|407465786|ref|YP_006776668.1| ATPase AAA [Candidatus Nitrosopumilus sp. AR2]
gi|407048974|gb|AFS83726.1| ATPase AAA [Candidatus Nitrosopumilus sp. AR2]
Length = 710
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 85/203 (41%), Gaps = 24/203 (11%)
Query: 148 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 207
K+ + +V+ P + + G G GK+ + + N I + EL S GE K +
Sbjct: 473 KDAYDFVDVESPKGILLHGPPGTGKTLIAKALAKMTESNFISIKGPELLSKWVGESEKGV 532
Query: 208 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 267
R+ +R+A ++ C +F++++DA R G + V +V+ L I
Sbjct: 533 REIFRKA----RQAAPCIIFLDEVDALVPRRGSGSDSHVTENVVSQILTEID-------- 580
Query: 268 PGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR-------IGVCSGI 320
G+ EE V II N + L+R GR ++ P +++ I
Sbjct: 581 -GL---EELHNVLIIGATNRLDIVDEALLRPGRFDRIIKVPNPDEKGRQHIFEIHTKKKP 636
Query: 321 FRTDNVPKEDIVKLVDTFPGQSI 343
+D V +IVKL D F G I
Sbjct: 637 LASD-VKISEIVKLTDDFSGAEI 658
>gi|389846288|ref|YP_006348527.1| proteasome-activating nucleotidase [Haloferax mediterranei ATCC
33500]
gi|388243594|gb|AFK18540.1| proteasome-activating nucleotidase [Haloferax mediterranei ATCC
33500]
Length = 401
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 184 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 239
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 240 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGNIRIIA 289
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 290 ATNRFDMLDPAILRPGRFDRLIEVP 314
>gi|169600986|ref|XP_001793915.1| hypothetical protein SNOG_03347 [Phaeosphaeria nodorum SN15]
gi|160705850|gb|EAT88552.2| hypothetical protein SNOG_03347 [Phaeosphaeria nodorum SN15]
Length = 393
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P + R+ + S + + E
Sbjct: 276 --QTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEIMKIHASSVVTDGEIDFE 333
Query: 330 DIVKLVDTFPGQSI 343
IVK+ D F G +
Sbjct: 334 SIVKMSDGFNGADL 347
>gi|170591993|ref|XP_001900754.1| 26S proteasome regulatory chain 4 [Brugia malayi]
gi|158591906|gb|EDP30509.1| 26S proteasome regulatory chain 4, putative [Brugia malayi]
Length = 727
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 17/149 (11%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ-RYREAADIIKKGK 222
++G G GK+ + V I ++ +L N+G+ +KL+RQ +RE I ++
Sbjct: 507 LYGEPGTGKTLLAKAVAHSTSATFIRVTGADLIQKNSGDGSKLVRQYSFRELFRIARESV 566
Query: 223 MCCLFINDLDAGAGRMGGTTQYTVN---NQMVNATLMNIADNPTNVQLPGMYNQEENPRV 279
C +FI+++DA GT +Y + V T++ + + QL G E V
Sbjct: 567 PCIIFIDEIDA-----VGTKRYDTTCGGEREVQRTMLELLN-----QLDGF---ESRGDV 613
Query: 280 PIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
+I+ N L LIR GR+++ P
Sbjct: 614 KVIMATNRIDVLDPALIRPGRIDRKIELP 642
>gi|448292770|ref|ZP_21483091.1| proteasome-activating nucleotidase [Haloferax volcanii DS2]
gi|445571745|gb|ELY26288.1| proteasome-activating nucleotidase [Haloferax volcanii DS2]
Length = 435
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 218 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 273
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 274 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGNIRIIA 323
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 324 ATNRFDMLDPAILRPGRFDRLIEVP 348
>gi|443924537|gb|ELU43537.1| ATPase [Rhizoctonia solani AG-1 IA]
Length = 442
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 85/186 (45%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V A + N + + + + GE A+L+R+ + A K+ +
Sbjct: 172 LYGPPGTGKTLLARAVAATLSTNFLKVVSSAIVDKYIGESARLVREMFGYA----KEHEP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + G + +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDTLG--------KTKLIM 277
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + + + ++ + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHAAPVNKSGEIDYEAIVKLSDG 337
Query: 338 FPGQSI 343
F G +
Sbjct: 338 FNGADL 343
>gi|341038686|gb|EGS23678.1| 26S protease subunit RPT4 (26S protease subunit SUG2)-like protein
[Chaetomium thermophilum var. thermophilum DSM 1495]
Length = 391
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P + R+ + + + + + E
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHSASVAKEGEIDFE 331
Query: 330 DIVKLVDTFPGQSI 343
IVK+ D F G +
Sbjct: 332 SIVKMSDGFNGADL 345
>gi|110667503|ref|YP_657314.1| proteasome-activating nucleotidase [Haloquadratum walsbyi DSM
16790]
gi|109625250|emb|CAJ51672.1| proteasome-activating nucleotidase [Haloquadratum walsbyi DSM
16790]
Length = 405
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 80/194 (41%), Gaps = 36/194 (18%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M +E V II
Sbjct: 244 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGDVRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP--------------TREDRIGVCSGIFRTDNVPKE 329
N F L ++R GR ++ P TRE + +DNV E
Sbjct: 294 ATNRFDMLDEAILRPGRFDRLIEVPKPGIEGRKIIFQIHTREMNV--------SDNVEFE 345
Query: 330 DIVKLVDTFPGQSI 343
+ ++ D G I
Sbjct: 346 QLAEMADDASGADI 359
>gi|162606466|ref|XP_001713263.1| 26S proteasome AAA-ATPase subunit [Guillardia theta]
gi|12580729|emb|CAC27047.1| 26S proteasome AAA-ATPase subunit [Guillardia theta]
Length = 391
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + + +K N I ++ EL GE +L+R ++ A K
Sbjct: 175 LYGEPGTGKTLLAKAIASKTKANFIKITGSELVQKFLGEGPRLVRDLFKTA----HKLSP 230
Query: 224 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282
C +F++++DA G R T ++ + V T++ + + QL G N + II
Sbjct: 231 CIIFMDEIDAIGTIR---TDSHSEGEKEVQRTMLELLN-----QLDGFTT---NQNIKII 279
Query: 283 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 313
+ N TL LIR GR+++ +DR
Sbjct: 280 MATNRIDTLDPALIRPGRIDRKIEFSLPDDR 310
>gi|352681678|ref|YP_004892202.1| AAA family ATPase [Thermoproteus tenax Kra 1]
gi|350274477|emb|CCC81122.1| AAA family ATPase, possible cell division control protein cdc48
[Thermoproteus tenax Kra 1]
Length = 730
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 93/217 (42%), Gaps = 32/217 (14%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
++ P + ++G G GK+ + V + G N I + E+ S GE K++R+ +++A
Sbjct: 484 LRAPKGILLFGPPGTGKTLLAKAVATESGANFIAVRGPEIFSKWVGESEKMVREIFQKA- 542
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ C +FI+++DA A G V ++V L ++ G+ E
Sbjct: 543 ---RMAAPCVVFIDEIDALASARGLGADSFVTERVVAQML---------AEMDGIRTLEN 590
Query: 276 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP------ 327
I+V G N + L+R GR ++ + P + + + + T NVP
Sbjct: 591 -----IVVIGATNRPDLVDPALLRPGRFDRIIYVPPPDFKARLEIFLIHTRNVPLAKDVD 645
Query: 328 KEDIVKLVDTFPGQSIDF------FGALRARVYDDEV 358
E++ + + + G I+ F ALR + EV
Sbjct: 646 LEELARRTEGYSGADIELVVREATFLALREDINAKEV 682
>gi|336254270|ref|YP_004597377.1| proteasome-activating nucleotidase [Halopiger xanaduensis SH-6]
gi|335338259|gb|AEH37498.1| Proteasome-activating nucleotidase [Halopiger xanaduensis SH-6]
Length = 405
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M E+ + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGDIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|192361342|ref|YP_001983115.1| putative ATPase [Cellvibrio japonicus Ueda107]
gi|190687507|gb|ACE85185.1| probable ATPase [Cellvibrio japonicus Ueda107]
Length = 507
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 65/150 (43%), Gaps = 29/150 (19%)
Query: 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 219
L+LG+ GG GKS + V G+ + M G L + GE + REA +
Sbjct: 285 LLLGVQGG---GKSLAAKAVAGLWGLPLMRMDVGSLYNKYHGETER----NLREALKLAD 337
Query: 220 KGKMCCLFINDLDAGA---GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 276
C L++++++ G G GG +Q + TL+ + E
Sbjct: 338 AMSPCVLWLDEIEKGMAQDGNDGGVSQRLL------GTLLT-------------WMAERT 378
Query: 277 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 306
RV I+ T ND S L LIR GR+++ ++
Sbjct: 379 TRVFIVATSNDISRLPPELIRKGRLDEIFF 408
>gi|448697529|ref|ZP_21698569.1| ATPase AAA [Halobiforma lacisalsi AJ5]
gi|445781482|gb|EMA32338.1| ATPase AAA [Halobiforma lacisalsi AJ5]
Length = 743
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 17/150 (11%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V P + ++G G GK+ + V + N I + +L S GE K IRQ +R+A
Sbjct: 493 VDPPAGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKA- 551
Query: 216 DIIKKGKMCCLFINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 274
++ +F ++LDA A GR GG T V+ ++VN L +L G+ E
Sbjct: 552 ---RQVSPTVIFFDELDALAPGRGGGETGSNVSERVVNQLL---------TELDGLEEME 599
Query: 275 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 304
+ V +I N + L+R GR ++
Sbjct: 600 D---VMVIGATNRPDMIDPALLRSGRFDRL 626
>gi|401015370|gb|AFP89349.1| ribulose-1,5-bisphosphate carboxylase/oxygenase activase, partial
[Prunus persica]
Length = 23
Score = 47.4 bits (111), Expect = 0.013, Method: Composition-based stats.
Identities = 22/23 (95%), Positives = 23/23 (100%)
Query: 182 KMGINPIMMSAGELESGNAGEPA 204
KMGI+PIMMSAGELESGNAGEPA
Sbjct: 1 KMGISPIMMSAGELESGNAGEPA 23
>gi|156102703|ref|XP_001617044.1| 26S proteasome ATPase subunit [Plasmodium vivax Sal-1]
gi|148805918|gb|EDL47317.1| 26S proteasome ATPase subunit, putative [Plasmodium vivax]
Length = 420
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + + I + EL GE A+++R+ ++ A K K
Sbjct: 201 LYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARMVRELFQMA----KSKKA 256
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C LFI+++DA G G + + + V T++ I + QL G N+ + +++
Sbjct: 257 CILFIDEVDAIGGSRGDESAH--GDHEVQRTMLEIVN-----QLDGFDNRGN---IKVLM 306
Query: 284 TGNDFSTLYAPLIRDGRMEK 303
N TL + L+R GR+++
Sbjct: 307 ATNRPDTLDSALVRPGRIDR 326
>gi|448729351|ref|ZP_21711668.1| proteasome-activating nucleotidase [Halococcus saccharolyticus DSM
5350]
gi|445795298|gb|EMA45827.1| proteasome-activating nucleotidase [Halococcus saccharolyticus DSM
5350]
Length = 404
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+ G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 187 LHGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----EVAREHEP 242
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M EE + II
Sbjct: 243 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFEERGEIRIIA 292
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 293 ATNRFDMLDRAILRPGRFDRLIEVP 317
>gi|409728090|ref|ZP_11270965.1| proteasome-activating nucleotidase [Halococcus hamelinensis 100A6]
gi|448724264|ref|ZP_21706772.1| proteasome-activating nucleotidase [Halococcus hamelinensis 100A6]
gi|445785934|gb|EMA36715.1| proteasome-activating nucleotidase [Halococcus hamelinensis 100A6]
Length = 406
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+ G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 188 LHGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----EVAREHEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M EE V II
Sbjct: 244 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFEERGEVRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|432329094|ref|YP_007247238.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum sp. MAR08-339]
gi|432135803|gb|AGB05072.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum sp. MAR08-339]
Length = 738
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 85/185 (45%), Gaps = 17/185 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + N I + E+ S GE K IR+ +++A K+
Sbjct: 504 LYGPPGTGKTLLAKAVATESEANFISIKGPEVMSKWVGESEKAIREIFKKA----KQSSP 559
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++D+ A R G V ++VN L ++ D T ++ V +I
Sbjct: 560 CIVFLDEIDSIAPRRGYYAGSGVTERIVNQLLTSM-DGLTKME-----------GVVVIA 607
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSI 343
N + L+R GR+++ + P +++ + T N+P + V L + G++
Sbjct: 608 ATNRPDIVDPALLRPGRIDRIVYIPPPDEKARLEILKVHTRNMPLSEDVSL-EKIAGETE 666
Query: 344 DFFGA 348
+ GA
Sbjct: 667 FYTGA 671
>gi|452821838|gb|EME28864.1| AAA-type ATPase [Galdieria sulphuraria]
Length = 406
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 75/153 (49%), Gaps = 14/153 (9%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + M + + + A + GE A++IR+ ++ A
Sbjct: 176 IKTPKGVLLYGPPGTGKTLLARAIASNMDCSFLKVVASAIVDKYIGESARIIREMFQYA- 234
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 235 ---KAHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 281
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
+V +++ N L L+R GR+++ P
Sbjct: 282 IGKVKLVMATNRPDVLDPALLRPGRLDRKIEIP 314
>gi|70606569|ref|YP_255439.1| SAV protein-like [Sulfolobus acidocaldarius DSM 639]
gi|449066788|ref|YP_007433870.1| SAV protein-like protein [Sulfolobus acidocaldarius N8]
gi|449069061|ref|YP_007436142.1| SAV protein-like protein [Sulfolobus acidocaldarius Ron12/I]
gi|30088847|gb|AAP13472.1| AAA family ATPase [Sulfolobus acidocaldarius]
gi|68567217|gb|AAY80146.1| SAV protein-like [Sulfolobus acidocaldarius DSM 639]
gi|449035296|gb|AGE70722.1| SAV protein-like protein [Sulfolobus acidocaldarius N8]
gi|449037569|gb|AGE72994.1| SAV protein-like protein [Sulfolobus acidocaldarius Ron12/I]
Length = 773
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 16/182 (8%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 214
+++ P + ++G G GK+ + V + G N I + E+ S GE K IR+ +R+A
Sbjct: 499 SIEPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA 558
Query: 215 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 274
++ +F +++D+ A G +T V ++VN L ++ G+ E
Sbjct: 559 ----RQAAPTVIFFDEIDSIAPIRGLSTDSGVTERIVNQLL---------AEMDGIEKLE 605
Query: 275 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKL 334
V +I N L L+R GR ++ + P + T NVP + V L
Sbjct: 606 N---VVVIAATNRPDILDPALLRPGRFDRLIYVPPPDKTARFEILKVHTKNVPLAEDVSL 662
Query: 335 VD 336
D
Sbjct: 663 ED 664
>gi|374635878|ref|ZP_09707467.1| AAA family ATPase, CDC48 subfamily [Methanotorris formicicus
Mc-S-70]
gi|373560840|gb|EHP87090.1| AAA family ATPase, CDC48 subfamily [Methanotorris formicicus
Mc-S-70]
Length = 732
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 79/179 (44%), Gaps = 16/179 (8%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
++ P + ++G G GK+ + V + N I + E+ S GE K IR+ +R+A
Sbjct: 483 IRPPRGVLLFGPPGTGKTLLAKAVANESEANFISVKGPEIFSKWVGESEKAIREIFRKA- 541
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ +F +++D+ A R G V ++VN L +L G+ EE
Sbjct: 542 ---RQTAPTVIFFDEIDSIAPRRGSGHDSGVTEKVVNQLL---------TELDGL---EE 586
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKL 334
V +I N L L+R GR+++ + P + + + T N+P + V L
Sbjct: 587 PKDVVVIAATNRPDILDPALLRPGRLDRIVFVPAPDKKTRLSIFKVHTKNMPLAEDVDL 645
>gi|332030866|gb|EGI70502.1| 26S protease regulatory subunit S10B [Acromyrmex echinatior]
Length = 393
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 176 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 231
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 232 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 281
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E +VKL D
Sbjct: 282 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALPIAKHGEIDYEAVVKLSDG 341
Query: 338 FPGQSI 343
F G +
Sbjct: 342 FNGADL 347
>gi|402086352|gb|EJT81250.1| 26S protease subunit rpt4 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 390
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 165 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 223
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 224 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 272
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P + R+ + +G+ +V E
Sbjct: 273 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHAAGVVTEGDVDFE 330
Query: 330 DIVKLVDTFPGQSI 343
+VK+ D G +
Sbjct: 331 SVVKMSDGLNGADL 344
>gi|268534030|ref|XP_002632145.1| C. briggsae CBR-RPT-4 protein [Caenorhabditis briggsae]
Length = 398
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 100/218 (45%), Gaps = 29/218 (13%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A++IR+ + A D +
Sbjct: 181 LFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 236
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + QL G + +V +I+
Sbjct: 237 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DSLGKVKVIM 286
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + + I + + E +VKL D
Sbjct: 287 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDG 346
Query: 338 FPGQSIDFFG------ALRAR---VYDDEVRKWISEVG 366
F + A+RA V D++ K + +VG
Sbjct: 347 FSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKVG 384
>gi|395326665|gb|EJF59072.1| 26S proteasome subunit P45 [Dichomitus squalens LYAD-421 SS1]
Length = 400
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V A + N + + + + GE A+++R+ + A
Sbjct: 176 IKPPKGVLLYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARVVREMFGYA- 234
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 235 ---REHEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 281
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
R +I+ N TL L+R GR+++ P + R+ + + ++ + E
Sbjct: 282 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHSQPVNKSGEIDYE 341
Query: 330 DIVKLVDTFPGQSI 343
IVKL D F G +
Sbjct: 342 AIVKLSDGFNGADL 355
>gi|429193621|ref|YP_007179299.1| AAA ATPase [Natronobacterium gregoryi SP2]
gi|448326640|ref|ZP_21515988.1| ATPase AAA [Natronobacterium gregoryi SP2]
gi|429137839|gb|AFZ74850.1| AAA family ATPase, CDC48 subfamily [Natronobacterium gregoryi SP2]
gi|445610829|gb|ELY64597.1| ATPase AAA [Natronobacterium gregoryi SP2]
Length = 743
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 17/142 (11%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SP 556
Query: 224 CCLFINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282
+F ++LDA A GR GG T V+ ++VN L +L G+ E+ V +I
Sbjct: 557 TVIFFDELDALAPGRGGGETGSNVSERVVNQLL---------TELDGLEEMED---VMVI 604
Query: 283 VTGNDFSTLYAPLIRDGRMEKF 304
N + L+R GR ++
Sbjct: 605 GATNRPDMIDPALLRSGRFDRL 626
>gi|17945503|gb|AAL48804.1| RE23388p [Drosophila melanogaster]
Length = 397
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 180 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 235
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 236 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 285
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 337
N +L L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 286 ATNRPDSLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEIDYEAIVKLSDN 345
Query: 338 FPGQSI 343
F G +
Sbjct: 346 FNGADL 351
>gi|406862559|gb|EKD15609.1| 26S protease regulatory subunit s10b [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 390
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 165 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 223
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 224 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 272
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P + R+ + +G+ +V E
Sbjct: 273 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEIMKIHAAGVVTEGDVDFE 330
Query: 330 DIVKLVDTFPGQSI 343
+VK+ D G +
Sbjct: 331 SVVKMSDGLNGADL 344
>gi|50307971|ref|XP_453984.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643119|emb|CAG99071.1| KLLA0E00837p [Kluyveromyces lactis]
Length = 814
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 80/183 (43%), Gaps = 23/183 (12%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+ P + +WG G GK+ + V + N I + EL + GE + IRQ + A
Sbjct: 545 ISAPAGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFNRA- 603
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ C +F ++LDA R + + ++++VN L +L G+
Sbjct: 604 ---RASVPCIIFFDELDALVPRRDASLSES-SSRVVNTLL---------TELDGL----- 645
Query: 276 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKEDI 331
N R I V G N + ++R GR++K F P E+++ + + R++ P D
Sbjct: 646 NDRRGIFVVGATNRPDMIDPAMLRPGRLDKTLFIELPNFEEKVDIMRTLIRSNGTPIADD 705
Query: 332 VKL 334
V +
Sbjct: 706 VDI 708
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 23/198 (11%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V+ P + + G G GK+ + ++ + I +SA + SG +GE K IR+ + EA
Sbjct: 230 VEPPRGVLLHGPPGCGKTSIANALAGELQVPFISISAPSVVSGMSGESEKKIRELFDEAK 289
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ C +F +++DA + G Q + ++V A L+ D + ++ G
Sbjct: 290 SLAP----CLVFFDEIDAITPKRDGGAQREMERRIV-AQLLTSMDELSFEKMEGK----- 339
Query: 276 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTDNVPKE-D 330
P+IV G N +L A L R GR ++ P R + + + + E D
Sbjct: 340 ----PVIVIGATNRPDSLDAALRRAGRFDREICLNVPNETSRYFILKKMASSLKIDGEID 395
Query: 331 IVKLVDTFPGQSIDFFGA 348
+KL PG F GA
Sbjct: 396 FIKLAKLTPG----FVGA 409
>gi|341893757|gb|EGT49692.1| CBN-RPT-4 protein [Caenorhabditis brenneri]
Length = 398
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 100/218 (45%), Gaps = 29/218 (13%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A++IR+ + A D +
Sbjct: 181 LFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 236
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + QL G + +V +I+
Sbjct: 237 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DSLGKVKVIM 286
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + + I + + E +VKL D
Sbjct: 287 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDG 346
Query: 338 FPGQSIDFFG------ALRAR---VYDDEVRKWISEVG 366
F + A+RA V D++ K + +VG
Sbjct: 347 FSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKVG 384
>gi|307207117|gb|EFN84926.1| 26S protease regulatory subunit S10B [Harpegnathos saltator]
Length = 393
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 176 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 231
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 232 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 281
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E +VKL D
Sbjct: 282 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALPIAKHGEIDYEAVVKLSDG 341
Query: 338 FPGQSI 343
F G +
Sbjct: 342 FNGADL 347
>gi|428320723|ref|YP_007118605.1| AAA ATPase central domain protein [Oscillatoria nigro-viridis PCC
7112]
gi|428244403|gb|AFZ10189.1| AAA ATPase central domain protein [Oscillatoria nigro-viridis PCC
7112]
Length = 545
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 23/164 (14%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
+PN K L++GI +G GKS + + + + + + G L G GE +RQ +
Sbjct: 282 IPNPKGVLLVGI---QGTGKSLSAKTIACEWRLPLLRLDTGRLFGGVVGESESRVRQMIQ 338
Query: 213 EAADIIKKGKMCCLFINDLDAGAGRM-GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 271
A I C L+I+++D G + G+ + ++ V +L+ +
Sbjct: 339 LAEAIAP----CVLWIDEIDKAFGNIISGSDGDSGTSRRVFGSLIT-------------W 381
Query: 272 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 313
QE+ V I+ T N+ L A L+R GR ++ ++ P+ +R
Sbjct: 382 MQEKTSPVFIVATANNVRILPAELLRKGRFDEIFFLNLPSESER 425
>gi|392559623|gb|EIW52807.1| AAA-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 1055
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 87/202 (43%), Gaps = 33/202 (16%)
Query: 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 221
L ++G G GK+ V + G+N I + EL + G K +R + A+
Sbjct: 730 LLLYGYPGCGKTLLASAVAKECGLNFISIKGPELLNKYIGASEKSVRDLFERAS----AA 785
Query: 222 KMCCLFINDLDAGAGRMG----GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 277
K C LF ++ D+ A + G G T VN + T M+ A+ L G+Y
Sbjct: 786 KPCVLFFDEFDSIAPKRGHDSTGVTDRVVNQML---TQMDGAEG-----LDGVYVLAATS 837
Query: 278 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNV-PKEDIVKL 334
R +I + L+R GR++K P+ EDRI + + R + P D+ +L
Sbjct: 838 RPDLIDSA---------LLRPGRLDKSLLCDMPSLEDRIEILDALRRKVAIAPSVDLAEL 888
Query: 335 VDTFPGQSIDFFGA-LRARVYD 355
G F GA L+A VY+
Sbjct: 889 AHETEG----FSGADLQALVYN 906
>gi|433602302|ref|YP_007034671.1| Microtubule-severing ATPase [Saccharothrix espanaensis DSM 44229]
gi|407880155|emb|CCH27798.1| Microtubule-severing ATPase [Saccharothrix espanaensis DSM 44229]
Length = 745
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 88/202 (43%), Gaps = 23/202 (11%)
Query: 110 MSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVV--VHITKNFLNLPNVKVPLILGIWGG 167
MS+ D + G +LD+ D + A + + + +F L V P L ++G
Sbjct: 469 MSTSDTLRTG--GLTLDDVGDMTEVKQALTEAALWPLQYPDSFARL-GVAPPRGLLLYGP 525
Query: 168 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227
G GK+F + +N + + EL GE + +R+ +R AA+ +F
Sbjct: 526 PGCGKTFLVRALAGSGRLNVLSVKGAELMDKFVGESERAVRELFRRAAE----AAPALVF 581
Query: 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 287
++++DA A R G ++ V +++V A L + + E R +++ +
Sbjct: 582 LDEVDALAPRRGQSSDSGVGDRVVAALLTEL-------------DGVEPLRDVVVLGATN 628
Query: 288 FSTLYAP-LIRDGRMEKFYWAP 308
L P L+R GR+E+ + P
Sbjct: 629 RPELIDPALLRPGRLERLVYVP 650
>gi|448704017|ref|ZP_21700557.1| ATPase AAA [Halobiforma nitratireducens JCM 10879]
gi|445796633|gb|EMA47134.1| ATPase AAA [Halobiforma nitratireducens JCM 10879]
Length = 743
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 17/142 (11%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SP 556
Query: 224 CCLFINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282
+F ++LDA A GR GG T V+ ++VN L +L G+ E+ V +I
Sbjct: 557 TVIFFDELDALAPGRGGGETGSNVSERVVNQLL---------TELDGLEEMED---VMVI 604
Query: 283 VTGNDFSTLYAPLIRDGRMEKF 304
N + L+R GR ++
Sbjct: 605 GATNRPDMIDPALLRSGRFDRL 626
>gi|310600|gb|AAA72002.1| ATPase [Sulfolobus acidocaldarius]
Length = 780
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 18/174 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + G N I + E+ S GE K IR+ +R+A ++
Sbjct: 526 LFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAP 581
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI-ADNPTNVQLPGMYNQEENPRVPII 282
+F +++D+ A G +T V ++VN L + P N +V II
Sbjct: 582 TVIFFDEIDSIAPIRGLSTDSGVTERIVNQLLAEMDGIVPLN-------------KVVII 628
Query: 283 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVD 336
N L L+R GR ++ + P + T NVP + V L D
Sbjct: 629 AATNRPDILDPALLRPGRFDRLIYVPPPDKTARFEILKVHTKNVPLAEDVSLED 682
>gi|320033057|gb|EFW15006.1| AAA family ATPase [Coccidioides posadasii str. Silveira]
Length = 749
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 18/143 (12%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G K+ + + + G+N + + E+ S GE + +R+ +R+A + +
Sbjct: 524 LYGPPGCSKTLTVKALATEAGLNFLAVKGAEILSMYVGESERALREIFRKA----RAARP 579
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+F +++DA AGR G +Q +N V TL+N ++ G+ EE V ++
Sbjct: 580 SIIFFDEIDAIAGRRGPGSQSGIN---VLTTLLN--------EMDGI---EELKNVLVVA 625
Query: 284 TGNDFSTLYAPLIRDGRMEKFYW 306
N TL L+R GR++ +
Sbjct: 626 ATNKPETLDPALMRPGRLDNILY 648
>gi|440797367|gb|ELR18455.1| 26S proteasome AAAATPase subunit RPT4a, putative [Acanthamoeba
castellanii str. Neff]
Length = 391
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + + + + GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAMAHNVEAKFMKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ + C +F++++DA GR +Q T ++ + TLM + + GM
Sbjct: 225 ---REHQPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLNQMDGFDELGM----- 274
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCS-GIFRTDNVPKE 329
V II+ N L L+R GR+++ P R D I + S I + ++ E
Sbjct: 275 ---VKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNESARLDIIKIHSESITKHGDIDFE 331
Query: 330 DIVKLVDTFPGQSI 343
+VKL D F G +
Sbjct: 332 SVVKLSDGFNGADL 345
>gi|195589664|ref|XP_002084570.1| GD14340 [Drosophila simulans]
gi|194196579|gb|EDX10155.1| GD14340 [Drosophila simulans]
Length = 398
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + ++M N + + + + GE A+LIR+ + A D +
Sbjct: 181 LYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIREMFAYARD----HQP 236
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + G +V +I+
Sbjct: 237 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKMIM 286
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P R D + + + + + E +VKL D
Sbjct: 287 ATNRPDTLDPALLRPGRLDRKLEIPLPNEVARMDILKIHAEPLNKRGEIDYEAVVKLSDL 346
Query: 338 FPGQSI 343
F G +
Sbjct: 347 FNGADL 352
>gi|154151004|ref|YP_001404622.1| proteasome-activating nucleotidase [Methanoregula boonei 6A8]
gi|166199290|sp|A7I8B8.1|PAN_METB6 RecName: Full=Proteasome-activating nucleotidase; Short=PAN;
AltName: Full=Proteasomal ATPase; AltName:
Full=Proteasome regulatory ATPase; AltName:
Full=Proteasome regulatory particle
gi|153999556|gb|ABS55979.1| 26S proteasome subunit P45 family [Methanoregula boonei 6A8]
Length = 436
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 18/163 (11%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + + + + EL GE A+L+R+ + D+ KK
Sbjct: 217 LYGPPGTGKTLLAKAVAHETNAHFMRVVGSELVQKYIGEGARLVRELF----DLAKKKAP 272
Query: 224 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282
+FI+++DA GA R T T ++ V TLM + L GM E V II
Sbjct: 273 TIIFIDEIDAVGASR---TEANTSGDREVQRTLMQL--------LAGMDGFETRGDVKII 321
Query: 283 VTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCSGIFRT 323
N L L+R GR ++ P E R+ + RT
Sbjct: 322 GATNRIDILDKALLRPGRFDRIIEIPLPDEEGRLSILKVHTRT 364
>gi|18977335|ref|NP_578692.1| cell division protein CDC48 [Pyrococcus furiosus DSM 3638]
gi|397651469|ref|YP_006492050.1| cell division protein CDC48 [Pyrococcus furiosus COM1]
gi|18893012|gb|AAL81087.1| cell division control protein 48, aaa family [Pyrococcus furiosus
DSM 3638]
gi|393189060|gb|AFN03758.1| cell division protein CDC48 [Pyrococcus furiosus COM1]
Length = 837
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 16/171 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 583 LYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKA----RQAAP 638
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A GG V ++++N L M +EN V +I
Sbjct: 639 AIIFIDEIDAIAPARGGYEGERVTDRLINQLLTE------------MDGIQENSGVVVIG 686
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKL 334
N + L+R GR ++ P +++ + T +P D V L
Sbjct: 687 ATNRPDIIDPALLRPGRFDRLILVPAPDEKARLEIFKVHTRGMPLADDVDL 737
>gi|73920780|sp|Q07590.2|SAV_SULAC RecName: Full=Protein SAV
Length = 780
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 18/174 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + G N I + E+ S GE K IR+ +R+A ++
Sbjct: 526 LFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAP 581
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI-ADNPTNVQLPGMYNQEENPRVPII 282
+F +++D+ A G +T V ++VN L + P N +V II
Sbjct: 582 TVIFFDEIDSIAPIRGLSTDSGVTERIVNQLLAEMDGIVPLN-------------KVVII 628
Query: 283 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVD 336
N L L+R GR ++ + P + T NVP + V L D
Sbjct: 629 AATNRPDILDPALLRPGRFDRLIYVPPPDKTARFEILKVHTKNVPLAEDVSLED 682
>gi|443922351|gb|ELU41808.1| AAA domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 410
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 77/184 (41%), Gaps = 12/184 (6%)
Query: 123 YSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAK 182
++ +T+ ++ A + H + L +K P + ++G G GK+ +
Sbjct: 230 WTSKSTVPSIWCATLDQLGLACHSRHVMVFLAGLKPPKGILLYGPPGTGKTHLARAIARS 289
Query: 183 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM---G 239
+ + +S EL S GE +R + EA +K C + ++++DA + G
Sbjct: 290 TNASLVAVSGAELASAYHGETEARLRAVFAEA----RKQSPCIIVLDEVDAMCPQREEGG 345
Query: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 299
G TV + ++ AD+ N + Q PR+ ++ T N + + L R G
Sbjct: 346 GVEARTVATLLTELDGIDTADHGGNA-----HEQRRQPRIVVVATTNRPNAIDPALRRPG 400
Query: 300 RMEK 303
R ++
Sbjct: 401 RFDR 404
>gi|374632948|ref|ZP_09705315.1| AAA family ATPase, CDC48 subfamily [Metallosphaera yellowstonensis
MK1]
gi|373524432|gb|EHP69309.1| AAA family ATPase, CDC48 subfamily [Metallosphaera yellowstonensis
MK1]
Length = 768
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 16/160 (10%)
Query: 149 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 208
++ + V+ P + ++G G GK+ + V + G N I + E+ S GE K IR
Sbjct: 488 DYYEMAGVEPPRGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEVLSKWVGESEKAIR 547
Query: 209 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 268
+ +R+A + +F +++DA A G + V ++VN L ++
Sbjct: 548 EIFRKA----RMYAPSVIFFDEIDAIAPIRGLSPDSGVTERLVNQLL---------AEMD 594
Query: 269 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
G+ N + V I+ N L L+R GR EK + P
Sbjct: 595 GIENLDN---VVIVAATNRPDILDPALLRPGRFEKLMYVP 631
>gi|355572388|ref|ZP_09043532.1| Proteasome-activating nucleotidase [Methanolinea tarda NOBI-1]
gi|354824762|gb|EHF09004.1| Proteasome-activating nucleotidase [Methanolinea tarda NOBI-1]
Length = 412
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 16/146 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+ G G GK+ V + + + + EL GE A+L+R+ + D+ KK
Sbjct: 192 LHGPPGTGKTLLARAVAHETNAHFLRVVGSELVQKYIGEGARLVRELF----DLAKKKAP 247
Query: 224 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282
+FI+++DA GA R TT ++ V TLM + L GM E V II
Sbjct: 248 TIIFIDEIDAVGASRTESTTS---GDREVQRTLMQL--------LAGMDGFERRGDVKII 296
Query: 283 VTGNDFSTLYAPLIRDGRMEKFYWAP 308
N L L+R GR ++ P
Sbjct: 297 GATNRIDILDRALLRPGRFDRIIEIP 322
>gi|195326985|ref|XP_002030203.1| GM25309 [Drosophila sechellia]
gi|194119146|gb|EDW41189.1| GM25309 [Drosophila sechellia]
Length = 398
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + ++M N + + + + GE A+LIR+ + A D +
Sbjct: 181 LYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIREMFAYARD----HQP 236
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + G +V +I+
Sbjct: 237 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKMIM 286
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P R D + + + + + E +VKL D
Sbjct: 287 ATNRPDTLDPALLRPGRLDRKLEIPLPNEVARMDILKIHAEPLNKRGEIDYEAVVKLSDL 346
Query: 338 FPGQSI 343
F G +
Sbjct: 347 FNGADL 352
>gi|119179544|ref|XP_001241347.1| hypothetical protein CIMG_08510 [Coccidioides immitis RS]
gi|392866735|gb|EAS30090.2| AAA family ATPase [Coccidioides immitis RS]
Length = 749
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 18/143 (12%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G K+ + + + G+N + + E+ S GE + +R+ +R+A + +
Sbjct: 524 LYGPPGCSKTLTVKALATEAGLNFLAVKGAEILSMYVGESERALREIFRKA----RAARP 579
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+F +++DA AGR G +Q +N V TL+N ++ G+ EE V ++
Sbjct: 580 SIIFFDEIDAIAGRRGPGSQSGIN---VLTTLLN--------EMDGI---EELKNVLVVA 625
Query: 284 TGNDFSTLYAPLIRDGRMEKFYW 306
N TL L+R GR++ +
Sbjct: 626 ATNKPETLDPALMRPGRLDNILY 648
>gi|448315080|ref|ZP_21504733.1| ATPase AAA [Natronococcus jeotgali DSM 18795]
gi|445612339|gb|ELY66065.1| ATPase AAA [Natronococcus jeotgali DSM 18795]
Length = 742
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 107/272 (39%), Gaps = 70/272 (25%)
Query: 87 TRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ-----GLRQYSLDNTLDGLYIAPAFMDK 141
TRG + D + A M TH V + + +++ LR+Y + LD I P+ +D+
Sbjct: 370 TRGMPLSDDVDLAHMADETHGFVGADIESLTKEAAMKALRRYLPEIDLDEEDIPPSLIDR 429
Query: 142 VVVH---------------ITKNFLNLP-------------------NVKVPL------- 160
++V + + + LP +V+ PL
Sbjct: 430 MIVKREDFRGALNEVEPSAMREVLVELPKISWDDVGGLHTAKEQVQESVEWPLNNPERFE 489
Query: 161 ILGI--------WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
LGI +G G GK+ + V + N I + +L S GE K IRQ +R
Sbjct: 490 RLGIDPPAGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFR 549
Query: 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 272
+A + +F ++LDA A GG T V+ ++VN L +L G+
Sbjct: 550 KARQV----SPTVIFFDELDALAPGRGGETGSNVSERVVNQLL---------TELDGL-- 594
Query: 273 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 304
EE V +I N + L+R GR ++
Sbjct: 595 -EEMENVMVIGATNRPDMIDPALLRSGRFDRL 625
>gi|449066850|ref|YP_007433932.1| ATP-dependent Zn protease [Sulfolobus acidocaldarius N8]
gi|449069122|ref|YP_007436203.1| ATP-dependent Zn protease [Sulfolobus acidocaldarius Ron12/I]
gi|449035358|gb|AGE70784.1| ATP-dependent Zn protease [Sulfolobus acidocaldarius N8]
gi|449037630|gb|AGE73055.1| ATP-dependent Zn protease [Sulfolobus acidocaldarius Ron12/I]
Length = 773
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 18/174 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + G N I + E+ S GE K IR+ +R+A ++
Sbjct: 519 LFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAP 574
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI-ADNPTNVQLPGMYNQEENPRVPII 282
+F +++D+ A G +T V ++VN L + P N +V II
Sbjct: 575 TVIFFDEIDSIAPIRGLSTDSGVTERIVNQLLAEMDGIVPLN-------------KVVII 621
Query: 283 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVD 336
N L L+R GR ++ + P + T NVP + V L D
Sbjct: 622 AATNRPDILDPALLRPGRFDRLIYVPPPDKTARFEILKVHTKNVPLAEDVSLED 675
>gi|70606628|ref|YP_255498.1| ATP-dependent Zn protease [Sulfolobus acidocaldarius DSM 639]
gi|68567276|gb|AAY80205.1| ATP-dependent Zn protease [Sulfolobus acidocaldarius DSM 639]
Length = 747
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 18/174 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + G N I + E+ S GE K IR+ +R+A ++
Sbjct: 493 LFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAP 548
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI-ADNPTNVQLPGMYNQEENPRVPII 282
+F +++D+ A G +T V ++VN L + P N +V II
Sbjct: 549 TVIFFDEIDSIAPIRGLSTDSGVTERIVNQLLAEMDGIVPLN-------------KVVII 595
Query: 283 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVD 336
N L L+R GR ++ + P + T NVP + V L D
Sbjct: 596 AATNRPDILDPALLRPGRFDRLIYVPPPDKTARFEILKVHTKNVPLAEDVSLED 649
>gi|307190651|gb|EFN74615.1| 26S protease regulatory subunit S10B [Camponotus floridanus]
Length = 389
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFNYARD----HQP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G + +V +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DSLGQVKMIM 277
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E +VKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALPIAKHGEIDYEAVVKLSDG 337
Query: 338 FPGQSI 343
F G +
Sbjct: 338 FNGADL 343
>gi|296005359|ref|XP_001349843.2| 26S proteasome regulatory subunit 7, putative [Plasmodium
falciparum 3D7]
gi|225631944|emb|CAD52250.2| 26S proteasome regulatory subunit 7, putative [Plasmodium
falciparum 3D7]
Length = 420
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + + I + EL GE A+++R+ ++ A K K
Sbjct: 201 LYGPPGTGKTLTARAIANRTDACFICVIGSELVQKYVGEGARMVRELFQMA----KSKKA 256
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C LFI+++DA G G + + + V T++ I + QL G N+ + +++
Sbjct: 257 CILFIDEVDAIGGSRGDESAH--GDHEVQRTMLEIVN-----QLDGFDNRGN---IKVLM 306
Query: 284 TGNDFSTLYAPLIRDGRMEK 303
N TL + L+R GR+++
Sbjct: 307 ATNRPDTLDSALVRPGRIDR 326
>gi|156840873|ref|XP_001643814.1| hypothetical protein Kpol_1044p15 [Vanderwaltozyma polyspora DSM
70294]
gi|156114440|gb|EDO15956.1| hypothetical protein Kpol_1044p15 [Vanderwaltozyma polyspora DSM
70294]
Length = 839
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 81/183 (44%), Gaps = 23/183 (12%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+ P + +WG G GK+ + V + N I + EL + GE + IRQ + A
Sbjct: 572 ISAPAGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERSIRQVFTRA- 630
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ C +F ++LDA R T+ ++++VN L +L G+
Sbjct: 631 ---RASVPCVIFFDELDALVPRR-DTSLSESSSRVVNTLL---------TELDGL----- 672
Query: 276 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKEDI 331
N R I V G N + ++R GR++K F P ++++ + + R++ P D
Sbjct: 673 NDRRGIFVIGATNRPDMIDPAMLRPGRLDKTLFIELPNEDEKLDIIKTLTRSNGTPLADD 732
Query: 332 VKL 334
V+L
Sbjct: 733 VEL 735
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 23/198 (11%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V+ P + + G G GK+ + ++ + I +SA + SG +GE K IR + EA
Sbjct: 241 VEPPRGVLLHGPPGCGKTSIANALAGELQVPFISISAPSVVSGMSGESEKKIRDLFDEAK 300
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
I C +F +++DA + G Q + ++V A L+ D + E+
Sbjct: 301 AIAP----CLMFFDEIDAITPKRDGGAQREMERRIV-AQLLTSMDE---------LSMEK 346
Query: 276 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTDNVPKE-D 330
P+IV G N +L A L R GR ++ P R+ + + + E D
Sbjct: 347 TGGKPVIVIGATNRPDSLDAALRRAGRFDREICLNVPNEVSRLHILKKMSENLKIDGEID 406
Query: 331 IVKLVDTFPGQSIDFFGA 348
+L PG F GA
Sbjct: 407 FAQLAKLTPG----FVGA 420
>gi|340502234|gb|EGR28943.1| vesicular transport protein cdc48, putative [Ichthyophthirius
multifiliis]
Length = 670
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 92/226 (40%), Gaps = 36/226 (15%)
Query: 116 ISQGLRQYSLDNTLDGLYIAPAF-------MDKVVVHITKNFLNLP----------NVKV 158
I + L++ +G I P+ +D + +T N + LP N+
Sbjct: 374 IEKALKEIQPTGKREGFAIIPSVTWDDIGALDDLKKELTNNII-LPILQPQKFEVFNISN 432
Query: 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII 218
P + ++G G GK+ + V N I + EL + GE K +RQ + A
Sbjct: 433 PSGVLMYGPPGCGKTLLAKAVANASKANFISVKGPELLNKYVGESEKSVRQVFSRA---- 488
Query: 219 KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 278
K C +F +++DA + G + V ++VN+ L +L G E +
Sbjct: 489 KTSAPCIIFFDEIDALVPKRGSDSTNQVTERVVNSLL---------AELDGF---EGRKQ 536
Query: 279 VPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 322
V +I N + L+R GR++K + P E++I + + +
Sbjct: 537 VFVIAATNRPDIIDPALLRGGRLDKLLYVPLPANEEKILILEALLK 582
>gi|443475189|ref|ZP_21065146.1| AAA ATPase central domain protein [Pseudanabaena biceps PCC 7429]
gi|443019976|gb|ELS33990.1| AAA ATPase central domain protein [Pseudanabaena biceps PCC 7429]
Length = 498
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 82/201 (40%), Gaps = 30/201 (14%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
LP+ + L+ GI +G GKS + + + + + G L +G GE R R
Sbjct: 257 LPHPRGLLLAGI---QGTGKSLTAKAISHHWHLPLLRLDVGRLFAGLVGES----ESRTR 309
Query: 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 272
+ + + C L+I+++D G N++ L +A
Sbjct: 310 QMIQLAEALSPCVLWIDEIDKAFAGTDGRGDSGTTNRVFGTFLTWMA------------- 356
Query: 273 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR---IGVCSGIFRTDNVP 327
E+ V ++ T N+ TL L+R GR ++ ++ P++E+R V +R N
Sbjct: 357 -EKTSPVFVVATANNIRTLPPELLRKGRFDEVFFVGLPSQEERSQIFAVHLSKYRPHNTR 415
Query: 328 KEDIVKLVDTFPGQSIDFFGA 348
DI +L P DF GA
Sbjct: 416 AYDIDRLAYETP----DFSGA 432
>gi|24663015|ref|NP_648525.1| Rpt4R [Drosophila melanogaster]
gi|7294649|gb|AAF49987.1| Rpt4R [Drosophila melanogaster]
gi|19527781|gb|AAL90005.1| AT06668p [Drosophila melanogaster]
gi|220960210|gb|ACL92641.1| CG7257-PA [synthetic construct]
Length = 398
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + ++M N + + + + GE A+LIR+ + A D +
Sbjct: 181 LYGPPGTGKTLLARAIASQMDANFLKVVSSAIVDKYIGESARLIREMFAYARD----HQP 236
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + G +V +I+
Sbjct: 237 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------QVKMIM 286
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P R D + + + + + E +VKL D
Sbjct: 287 ATNRPDTLDPALLRPGRLDRKLEIPLPNEVARMDILKIHAEPLNKRGEIDYEAVVKLSDL 346
Query: 338 FPGQSI 343
F G +
Sbjct: 347 FNGADL 352
>gi|149238059|ref|XP_001524906.1| ribosome biogenesis ATPase RIX7 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451503|gb|EDK45759.1| ribosome biogenesis ATPase RIX7 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 832
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 23/183 (12%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+ P + +WG G GK+ + V + N I + EL + GE K +RQ ++ A
Sbjct: 555 ITAPSGVLMWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESEKAVRQVFQRA- 613
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ C +F ++LDA R + + ++++VN L +L G+
Sbjct: 614 ---RASTPCIIFFDELDALVPRRDNSMSES-SSRVVNTLL---------TELDGL----- 655
Query: 276 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKEDI 331
N R + V G N + ++R GR++K + PT ++R + I R + P ++
Sbjct: 656 NDRKGVFVIGATNRPDMIDPAMLRPGRLDKTLYIQLPTPDERFEILKTIVRANQSPIDND 715
Query: 332 VKL 334
V L
Sbjct: 716 VNL 718
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 73/150 (48%), Gaps = 16/150 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V+ P + ++G G GK+ + ++ + I +SA + SG +GE K +R + EA
Sbjct: 226 VEPPRGVLLYGPPGCGKTTVANALAGELKVPFINISAPSIVSGMSGESEKKLRDLFEEAK 285
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ C +F++++DA + G Q + ++V A L+ + D +++ N+
Sbjct: 286 SVAP----CIIFMDEIDAITPKRDGGAQREMERRIV-AQLLTLMD---ELRMENTNNK-- 335
Query: 276 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK 303
P+IV G N +L + L R GR ++
Sbjct: 336 ----PVIVIGATNRPDSLDSALRRAGRFDR 361
>gi|448580267|ref|ZP_21644930.1| proteasome-activating nucleotidase, partial [Haloferax larsenii JCM
13917]
gi|445722482|gb|ELZ74144.1| proteasome-activating nucleotidase, partial [Haloferax larsenii JCM
13917]
Length = 250
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 33 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 88
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 89 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGNIRIIA 138
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 139 ATNRFDMLDPAILRPGRFDRLIEVP 163
>gi|448318822|ref|ZP_21508334.1| proteasome-activating nucleotidase [Natronococcus jeotgali DSM
18795]
gi|445598003|gb|ELY52073.1| proteasome-activating nucleotidase [Natronococcus jeotgali DSM
18795]
Length = 405
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + I M+ EL GE AKL+R ++ + ++ +
Sbjct: 188 LYGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLFK----VAREHEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M E+ + II
Sbjct: 244 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFEDRGDIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP 318
>gi|260947222|ref|XP_002617908.1| hypothetical protein CLUG_01367 [Clavispora lusitaniae ATCC 42720]
gi|238847780|gb|EEQ37244.1| hypothetical protein CLUG_01367 [Clavispora lusitaniae ATCC 42720]
Length = 809
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 23/176 (13%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+ P + +WG G GK+ + V + N I + EL + GE K +RQ ++ A
Sbjct: 541 ISAPAGVLMWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESEKAVRQVFQRA- 599
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ C +F ++LDA R T+ + ++ V TL+ +L G+
Sbjct: 600 ---RASAPCIIFFDELDALVPRR--TSSLSESSARVVNTLLT--------ELDGL----- 641
Query: 276 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP 327
N R I V G N + ++R GR++K + PT E+R+ + + + + P
Sbjct: 642 NDRQGIFVVGATNRPDMIDPAMLRPGRLDKTLYIELPTAEERLEILRTLVKANKTP 697
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 16/150 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V+ P + ++G G GK+ + ++ + I +SA + SG +GE K +R+ + EA
Sbjct: 215 VEPPRGVLLYGPPGCGKTTIANALAGELQVPFINISAPSVVSGMSGESEKKLREIFEEAR 274
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ C +F++++DA + G Q + ++V A L+ + D T + G
Sbjct: 275 SLAP----CIIFMDEIDAITPKRDGGAQREMERRIV-AQLLTLMDELTLDKTDGK----- 324
Query: 276 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK 303
P++V G N +L + L R GR ++
Sbjct: 325 ----PVVVLGATNRPDSLDSALRRAGRFDR 350
>gi|260435291|ref|ZP_05789261.1| putative Cell division protease FtsH family protein [Synechococcus
sp. WH 8109]
gi|260413165|gb|EEX06461.1| putative Cell division protease FtsH family protein [Synechococcus
sp. WH 8109]
Length = 599
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 109/278 (39%), Gaps = 50/278 (17%)
Query: 149 NFLNLPNV------KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 202
FLN P K+P + + G G GK+ + + + G+ ++A E G
Sbjct: 170 TFLNQPEAFIRLGAKIPRGVLLIGPPGTGKTLLAKAIAGEAGVPFFSIAASEFVELFVGV 229
Query: 203 PAKLIRQRYREAADIIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMN 257
A +R +R+A K+ C +FI+++DA GAG GG + Q +N L
Sbjct: 230 GASRVRDLFRQA----KEKSPCIVFIDEIDAVGRQRGAGIGGGNDE---REQTLNQLLTE 282
Query: 258 IADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIG 315
M EEN V ++ N L A L+R GR ++ P R R
Sbjct: 283 ------------MDGFEENSGVILLAATNRADVLDAALLRPGRFDRRIDVGLPDRRGREA 330
Query: 316 VCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGA-----------LRARVYDDEVRKWISE 364
+ + RT P +D V L D + ++ F GA L AR + ++ E
Sbjct: 331 ILAVHARTR--PLDDSVSLSD-WASRTPGFSGADLANLLNEAAILTARQNMLSIGQFQLE 387
Query: 365 VGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLV 402
+ERI L N P + K L E G LV
Sbjct: 388 GALERITMGLSNR----PLQDSAKKRLIAYHEVGHALV 421
>gi|115389152|ref|XP_001212081.1| 26S protease regulatory subunit S10B [Aspergillus terreus NIH2624]
gi|114194477|gb|EAU36177.1| 26S protease regulatory subunit S10B [Aspergillus terreus NIH2624]
Length = 393
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + M N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSMETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRTD-NVPKE 329
+ II+ N TL L+R GR+++ P R + + + S + D + E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHSSTVQLDGEIDFE 333
Query: 330 DIVKLVDTFPGQSI 343
+VK+ D G +
Sbjct: 334 SVVKMSDGLNGADL 347
>gi|448350148|ref|ZP_21538967.1| ATPase AAA [Natrialba taiwanensis DSM 12281]
gi|445637655|gb|ELY90803.1| ATPase AAA [Natrialba taiwanensis DSM 12281]
Length = 742
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SP 556
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+F ++LDA A GG T V+ ++VN L +L G+ + E+ V +I
Sbjct: 557 TVIFFDELDALAPGRGGETGSNVSERVVNQLL---------TELDGLEDMED---VMVIG 604
Query: 284 TGNDFSTLYAPLIRDGRMEKF 304
N + L+R GR ++
Sbjct: 605 ATNRPDMIDPALLRSGRFDRL 625
>gi|427706264|ref|YP_007048641.1| AAA ATPase [Nostoc sp. PCC 7107]
gi|427358769|gb|AFY41491.1| AAA ATPase central domain protein [Nostoc sp. PCC 7107]
Length = 504
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 82/201 (40%), Gaps = 30/201 (14%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
LP+ + L++GI +G GKS + + + + + G L G GE R R
Sbjct: 256 LPHPRGLLLVGI---QGTGKSLTAKAIAHHWHLPLLRLDVGRLFGGLVGES----ESRTR 308
Query: 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 272
+ + + C L+I+++D +G +++ + +A
Sbjct: 309 QMIQVAEALAPCVLWIDEIDKAFSGLGSKGDAGTTSRVFGTFITWLA------------- 355
Query: 273 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR---IGVCSGIFRTDNVP 327
E+ V ++ T ND L ++R GR ++ ++ PT+E+R V R N+
Sbjct: 356 -EKTSPVFVVATANDIQALPPEMLRKGRFDEIFFVGLPTQEERKAIFNVHLSRLRPHNLK 414
Query: 328 KEDIVKLVDTFPGQSIDFFGA 348
DI +L P DF GA
Sbjct: 415 SYDIDRLAYETP----DFSGA 431
>gi|303320901|ref|XP_003070445.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240110141|gb|EER28300.1| ATPase, AAA family protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 749
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 18/143 (12%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G K+ + + + G+N + + E+ S GE + +R+ +R+A + +
Sbjct: 524 LYGPPGCSKTLTVKALATEAGLNFLAVKGAEILSMYVGESERALREIFRKA----RAARP 579
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+F +++DA AGR G +Q +N V TL+N ++ G+ EE V ++
Sbjct: 580 SIIFFDEIDAIAGRRGPGSQSGIN---VLTTLLN--------EMDGI---EELKNVLVVA 625
Query: 284 TGNDFSTLYAPLIRDGRMEKFYW 306
N TL L+R GR++ +
Sbjct: 626 ATNKPETLDPALMRPGRLDNILY 648
>gi|119510147|ref|ZP_01629286.1| hypothetical protein N9414_00785 [Nodularia spumigena CCY9414]
gi|119465208|gb|EAW46106.1| hypothetical protein N9414_00785 [Nodularia spumigena CCY9414]
Length = 504
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 30/201 (14%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
LP+ + ++LGI +G GKS + + + + + G L G GE R R
Sbjct: 257 LPHPRGLMLLGI---QGTGKSLTAKAIAHHWHLPLLRLDVGRLFGGLVGES----ESRTR 309
Query: 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 272
+ + + C L+I+++D G +G +++ + +A
Sbjct: 310 QMIQVAEALAPCVLWIDEIDKGFSGLGAKGDAGTASRVFGTFITWLA------------- 356
Query: 273 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR---IGVCSGIFRTDNVP 327
E+ V ++ T ND L ++R GR ++ ++ PT+++R V R N+
Sbjct: 357 -EKTSPVFVVSTANDIQALPPEMLRKGRFDEIFFVGLPTQDERKAIFNVHLSRLRPHNLK 415
Query: 328 KEDIVKLVDTFPGQSIDFFGA 348
DI +L P DF GA
Sbjct: 416 SYDIDRLAYETP----DFSGA 432
>gi|300711240|ref|YP_003737054.1| cell division control protein 48 [Halalkalicoccus jeotgali B3]
gi|448296658|ref|ZP_21486712.1| cell division control protein 48 [Halalkalicoccus jeotgali B3]
gi|299124923|gb|ADJ15262.1| cell division control protein 48 [Halalkalicoccus jeotgali B3]
gi|445580951|gb|ELY35317.1| cell division control protein 48 [Halalkalicoccus jeotgali B3]
Length = 701
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 22/147 (14%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + ++ G+N I ++ EL GE K +R+ + A ++
Sbjct: 485 LYGPPGTGKTLLARAIASESGVNFIHVAGPELLDRYVGESEKAVRKVFERA----RQTAP 540
Query: 224 CCLFINDLDAGAGRMGGTTQYT--VNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 281
+F +++DA A GG + T V +Q++ L +ADNP V L +E
Sbjct: 541 SIVFFDEIDALAAERGGGHEVTERVVSQLLT-ELDGLADNPNLVVLAATNRKE------- 592
Query: 282 IVTGNDFSTLYAPLIRDGRMEKFYWAP 308
L LIR GR+E P
Sbjct: 593 --------ALDRALIRPGRLETHIEVP 611
>gi|448369971|ref|ZP_21556424.1| ATPase AAA [Natrialba aegyptia DSM 13077]
gi|445650411|gb|ELZ03335.1| ATPase AAA [Natrialba aegyptia DSM 13077]
Length = 742
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SP 556
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+F ++LDA A GG T V+ ++VN L +L G+ + E+ V +I
Sbjct: 557 TVIFFDELDALAPGRGGETGSNVSERVVNQLL---------TELDGLEDMED---VMVIG 604
Query: 284 TGNDFSTLYAPLIRDGRMEKF 304
N + L+R GR ++
Sbjct: 605 ATNRPDMIDPALLRSGRFDRL 625
>gi|448362336|ref|ZP_21550947.1| ATPase AAA [Natrialba asiatica DSM 12278]
gi|445648857|gb|ELZ01805.1| ATPase AAA [Natrialba asiatica DSM 12278]
Length = 742
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SP 556
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+F ++LDA A GG T V+ ++VN L +L G+ + E+ V +I
Sbjct: 557 TVIFFDELDALAPGRGGETGSNVSERVVNQLL---------TELDGLEDMED---VMVIG 604
Query: 284 TGNDFSTLYAPLIRDGRMEKF 304
N + L+R GR ++
Sbjct: 605 ATNRPDMIDPALLRSGRFDRL 625
>gi|294495131|ref|YP_003541624.1| proteasome-activating nucleotidase [Methanohalophilus mahii DSM
5219]
gi|292666130|gb|ADE35979.1| Proteasome-activating nucleotidase [Methanohalophilus mahii DSM
5219]
Length = 408
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 14/150 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V ++ + I MS +L GE A+L++ ++ A D
Sbjct: 192 MYGDPGTGKTLIAKAVASRAHASFIRMSGSDLVQKFIGEGARLVKDVFQMARD----KSP 247
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C LFI+++DA G T T + VN T++ + L M E +V II
Sbjct: 248 CILFIDEIDAVGGMR--THDGTTGSAEVNRTMLQL--------LSEMDGFEPRGQVKIIA 297
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTREDR 313
N L L+R GR ++ P +++
Sbjct: 298 ATNRIDLLDPALLRPGRFDRVIEIPIPDEK 327
>gi|388501068|gb|AFK38600.1| unknown [Lotus japonicus]
Length = 400
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 93/196 (47%), Gaps = 24/196 (12%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 171 IKPPRGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYAR 230
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGT--TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 273
D + C +F++++DA +GG ++ T ++ + TLM + + QL G
Sbjct: 231 D----HQPCIIFMDEIDA----IGGLRFSEGTSADREIQRTLMELLN-----QLDGF--- 274
Query: 274 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVP 327
++ +V +I+ N L L+R GR+++ P + R+ + +GI + +
Sbjct: 275 DQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEID 334
Query: 328 KEDIVKLVDTFPGQSI 343
E +VKL + F G +
Sbjct: 335 YEAVVKLAEGFNGADL 350
>gi|255316594|ref|ZP_05358177.1| ATP-dependent metallopeptidase HflB [Clostridium difficile
QCD-76w55]
gi|384359090|ref|YP_006196945.1| putative cell division protease FtsH-like protein [Clostridium
difficile BI1]
Length = 577
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 19/156 (12%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + G+ ++ + G AK +R+ + EA KK
Sbjct: 181 LYGPPGTGKTLIAKAVAGEAGVPFFSINGSDFIELYVGLGAKRVRELFEEA----KKKAP 236
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
LFI+++D+ G+ G + + + Q +NA L ++ G E + I+
Sbjct: 237 AILFIDEIDSIGGKRGCSGENSEQRQTINALL---------AEIDGFDGSE---GIFILC 284
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP---TREDRIGV 316
N L LIR GR +K P T EDR+ +
Sbjct: 285 ATNRLEDLDGALIRPGRFDKHISIPLPETSEDRLNI 320
>gi|383830124|ref|ZP_09985213.1| AAA+ family ATPase [Saccharomonospora xinjiangensis XJ-54]
gi|383462777|gb|EID54867.1| AAA+ family ATPase [Saccharomonospora xinjiangensis XJ-54]
Length = 747
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 98/230 (42%), Gaps = 27/230 (11%)
Query: 110 MSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVV--VHITKNFLNLPNVKVPLILGIWGG 167
MS+ D ++ G +LD+ D + + + V+ + +F L V P + I+G
Sbjct: 473 MSTTDTLATG--GLTLDDVGDMADVKQSLTEAVLWPLRYPDSFARL-GVAPPRGVLIYGP 529
Query: 168 KGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227
G GK+F + +N + EL GE + +R+ +R+AA+ +F
Sbjct: 530 PGNGKTFLVRALAGTGALNVFSVKGAELMDKWVGESERAVRELFRKAAE----AAPSLIF 585
Query: 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 287
++++DA R G ++ ++++V A L + + E R ++V +
Sbjct: 586 LDEVDALVPRRGQSSDSGASDRVVAALLTEL-------------DGVEPLRDVVVVGATN 632
Query: 288 FSTLYAP-LIRDGRMEKFYWAPT--REDRIGVCSGIFRTDNVPKEDIVKL 334
L P L+R GR+E+ + P E R + R N P D V L
Sbjct: 633 RPELVDPALLRPGRLERLIYVPPPDAEARAQILRASAR--NTPLADDVDL 680
>gi|302842074|ref|XP_002952581.1| hypothetical protein VOLCADRAFT_105558 [Volvox carteri f.
nagariensis]
gi|300262220|gb|EFJ46428.1| hypothetical protein VOLCADRAFT_105558 [Volvox carteri f.
nagariensis]
Length = 1909
Score = 47.0 bits (110), Expect = 0.018, Method: Composition-based stats.
Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 19/161 (11%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + G N I + EL + GE + +RQ + A +
Sbjct: 791 LYGPPGCGKTLVAKAVANESGANFISIKGPELLNKYVGESERAVRQLFARA----RAAHP 846
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C LF +++DA A R G T NNQ A+ N L M + + ++
Sbjct: 847 CVLFFDEMDALAPRRG-----TDNNQA--------AERVVNQLLTEMDGVDSRQGIFMVA 893
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 322
N + L+R GR++K + P DRI + + R
Sbjct: 894 ATNRPDMIDPALLRPGRLDKVLYVPLPPPRDRISILRALVR 934
>gi|391347147|ref|XP_003747826.1| PREDICTED: nuclear valosin-containing protein [Metaseiulus
occidentalis]
Length = 708
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 75/193 (38%), Gaps = 34/193 (17%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+ G G GK+ + V + GIN I + EL + GE K IRQ ++ A +
Sbjct: 484 MHGPPGCGKTLIAKAVANESGINFISVKGPELLNMYVGESEKAIRQVFQRA----RASAP 539
Query: 224 CCLFINDLDAGAGRM-----GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 278
C +F ++LDA R GG+T VN + M E +
Sbjct: 540 CVIFFDELDALCPRRSESGDGGSTSRVVNQLLTE-----------------MDGLEARKQ 582
Query: 279 VPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKED------ 330
V ++ N + ++R GR++ P R+DR + + + PK +
Sbjct: 583 VFVLAATNRPDIIDKAMLRPGRLDHIIHVGLPNRDDREDILRALTKNSTKPKIEGISLAA 642
Query: 331 IVKLVDTFPGQSI 343
I L + F G +
Sbjct: 643 IADLTEAFSGAEL 655
>gi|380494809|emb|CCF32871.1| 26S protease subunit rpt4 [Colletotrichum higginsianum]
Length = 391
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 86/194 (44%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P R+ + SG+ + E
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIALPNEVGRLEILKIHASGVVTEGEIDFE 331
Query: 330 DIVKLVDTFPGQSI 343
+VK+ D G +
Sbjct: 332 SVVKMSDGLNGADL 345
>gi|45184711|ref|NP_982429.1| AAL113Wp [Ashbya gossypii ATCC 10895]
gi|44980057|gb|AAS50253.1| AAL113Wp [Ashbya gossypii ATCC 10895]
gi|374105627|gb|AEY94538.1| FAAL113Wp [Ashbya gossypii FDAG1]
Length = 432
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 73/148 (49%), Gaps = 14/148 (9%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
++ P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 207 IQSPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 265
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N
Sbjct: 266 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNL-- 313
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEK 303
+ +I+ N TL L+R GR+++
Sbjct: 314 -GQTKVIMATNRPDTLDPALLRPGRLDR 340
>gi|259488300|tpe|CBF87639.1| TPA: AAA family ATPase/60S ribosome export protein Rix7, putative
(AFU_orthologue; AFUA_1G09210) [Aspergillus nidulans
FGSC A4]
Length = 729
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 18/167 (10%)
Query: 140 DKVVVHITKNFLNLP-NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 198
D V++ +T+ + L NV+ P + + G G GK+ A++G+ I +SA + SG
Sbjct: 179 DLVILPMTRPQVYLASNVQPPRGVLLHGPPGCGKTMIANAFAAELGVPFISISAPSIVSG 238
Query: 199 NAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 258
+GE K +R+ + EA K+ C +FI+++DA + +Q + ++V A L+
Sbjct: 239 MSGESEKALREHFEEA----KRLAPCLIFIDEIDAITPKR-ENSQREMEKRIV-AQLLTC 292
Query: 259 ADNPTNVQLPGMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGRMEK 303
D+ E+ P+IV N +L A L R GR +K
Sbjct: 293 MDD---------LALEKTDGKPVIVLAATNRPDSLDAALRRGGRFDK 330
Score = 41.6 bits (96), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 85/204 (41%), Gaps = 20/204 (9%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+ P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 500 ITAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAVRQVFVRAR 559
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
I C +F ++LDA R T + ++VN L + ++ Q G+Y
Sbjct: 560 SSIP----CVIFFDELDALVPRRDDTLS-EASARVVNTLLTELDGLGSSRQ--GIY---- 608
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP-KEDIV 332
+I N + ++R GR+E + P+ +R+ + + R + ED+
Sbjct: 609 -----VIAATNRPDIIDPAMLRPGRLETLLFVNLPSPLERVEILQTLVRRLPIEFNEDLR 663
Query: 333 KLVDTFPGQS-IDFFGALRARVYD 355
+L + G S D LR Y+
Sbjct: 664 RLAEECEGFSGADLTSLLRRAGYN 687
>gi|220907834|ref|YP_002483145.1| ATPase AAA [Cyanothece sp. PCC 7425]
gi|219864445|gb|ACL44784.1| AAA ATPase central domain protein [Cyanothece sp. PCC 7425]
Length = 515
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 27/173 (15%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
+PN K L++GI +G GKS + + + + + + G L G GE +RQ +
Sbjct: 250 IPNPKGVLLVGI---QGTGKSLSAKTIAHEWRLPLLRLDTGRLFGGIVGESESRVRQMIQ 306
Query: 213 EAADIIKKGKMCCLFINDLDAGAGRM-GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 271
A + C L+I+++D G + G + ++ V +L+ +
Sbjct: 307 LAEAMAP----CVLWIDEIDKAFGNLTSGADGDSGTSRRVFGSLIT-------------W 349
Query: 272 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFR 322
QE+ V I+ T N+ L A L+R GR ++ ++ PT +R IFR
Sbjct: 350 MQEKTSPVFIVATANNVQILPAELLRKGRFDEIFFLNLPTESER----QDIFR 398
>gi|315231037|ref|YP_004071473.1| cell division FtsH-like protein [Thermococcus barophilus MP]
gi|315184065|gb|ADT84250.1| cell division FtsH-like protein [Thermococcus barophilus MP]
Length = 796
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 17/150 (11%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 556 LYGPPGTGKTLLAKAVATESEANFIGIRGPEVLSKWVGESEKNIREIFRKA----RQAAP 611
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A R G T V ++++N L M EEN V +I
Sbjct: 612 TVIFIDEIDAIAPRRG-TDVNRVTDRLINQLLTE------------MDGIEENSGVVVIA 658
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTREDR 313
N L L+R GR ++ P +++
Sbjct: 659 ATNRPDILDPALLRPGRFDRLILVPAPDEK 688
>gi|367042920|ref|XP_003651840.1| hypothetical protein THITE_2112577 [Thielavia terrestris NRRL 8126]
gi|346999102|gb|AEO65504.1| hypothetical protein THITE_2112577 [Thielavia terrestris NRRL 8126]
Length = 391
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P + R+ + +G+ + + E
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHAAGVAKEGEIDFE 331
Query: 330 DIVKLVDTFPGQSI 343
+VK+ D G +
Sbjct: 332 SVVKMSDGLNGADL 345
>gi|388851908|emb|CCF54502.1| related to RIX7-AAA-type ATPase required for biogenesis and nuclear
export of 60S ribosomal subunits [Ustilago hordei]
Length = 883
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 17/149 (11%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
VK P + + G G GK+ V ++G+ + +SA + SG +GE K IR + EAA
Sbjct: 185 VKPPRGVLLHGPPGCGKTMLAGAVAGELGVPFLSISAPSVVSGTSGESEKTIRDTFDEAA 244
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
I C LFI+++DA + T Q + ++V L ++ D + E+
Sbjct: 245 SIAP----CILFIDEIDAITPKR-ETAQREMERRIVAQLLTSLDD----------LSWEK 289
Query: 276 NPRVPIIVTG--NDFSTLYAPLIRDGRME 302
P+++ G N +L + L R GR +
Sbjct: 290 TDGKPVMIIGATNRPDSLDSALRRAGRFD 318
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 21/173 (12%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+WG G GK+ + V + N I + EL + GE K +RQ + A +
Sbjct: 604 LWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESEKAVRQVFARA----RTSSP 659
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F ++LDA R + + ++++VN L + T VQ Y +I
Sbjct: 660 CVIFFDELDALVPRRDDSLSES-SSRVVNTLLTELDGLETRVQ---TY---------VIA 706
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDIVKL 334
N + + R GR++K + P ++R+ + I T P D V L
Sbjct: 707 ATNRPDMIDPAMCRPGRLDKLLYVDLPKPDERLEILKTI--TSKTPLSDEVDL 757
>gi|145255749|ref|XP_001399076.1| 26S protease subunit rpt4 [Aspergillus niger CBS 513.88]
gi|134084670|emb|CAK43348.1| unnamed protein product [Aspergillus niger]
gi|350630839|gb|EHA19211.1| hypothetical protein ASPNIDRAFT_212230 [Aspergillus niger ATCC
1015]
gi|358373476|dbj|GAA90074.1| 26S protease regulatory subunit S10B [Aspergillus kawachii IFO
4308]
Length = 393
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + M N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSMETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRTD-NVPKE 329
+ II+ N TL L+R GR+++ P R + + + S + D + E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHSSTVQLDGEIDFE 333
Query: 330 DIVKLVDTFPGQSI 343
+VK+ D G +
Sbjct: 334 SVVKMSDGLNGADL 347
>gi|310790858|gb|EFQ26391.1| 26S proteasome subunit P45 family protein [Glomerella graminicola
M1.001]
Length = 391
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 86/194 (44%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P R+ + SG+ + E
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIALPNEVGRLEILKIHASGVVTEGEIDFE 331
Query: 330 DIVKLVDTFPGQSI 343
+VK+ D G +
Sbjct: 332 SVVKMSDGLNGADL 345
>gi|261201460|ref|XP_002627130.1| 26S protease regulatory subunit S10B [Ajellomyces dermatitidis
SLH14081]
gi|239592189|gb|EEQ74770.1| 26S protease regulatory subunit S10B [Ajellomyces dermatitidis
SLH14081]
gi|327348334|gb|EGE77191.1| proteasome regulatory particle subunit Rpt4 [Ajellomyces
dermatitidis ATCC 18188]
Length = 392
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 167 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 225
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 226 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 274
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P + R+ + SG+ + E
Sbjct: 275 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHASGVAIEGEIDFE 332
Query: 330 DIVKLVDTFPGQSI 343
IVK+ D G +
Sbjct: 333 SIVKMSDGLNGADL 346
>gi|220909462|ref|YP_002484773.1| ATPase AAA [Cyanothece sp. PCC 7425]
gi|219866073|gb|ACL46412.1| AAA ATPase central domain protein [Cyanothece sp. PCC 7425]
Length = 537
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 102/233 (43%), Gaps = 36/233 (15%)
Query: 137 AFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196
AF D+ +N+ +PN K L++GI +G GKS + + + + + + G L
Sbjct: 262 AFTDE-----ARNY-GIPNPKGVLLVGI---QGTGKSLSAKTISHEWRLPLLRLDTGRLF 312
Query: 197 SGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM-GGTTQYTVNNQMVNATL 255
G GE +RQ + A + C L+I+++D G + G + ++ V +L
Sbjct: 313 GGIVGESESRVRQMIQLAEAMAP----CVLWIDEIDKAFGNITSGADGDSGTSRRVFGSL 368
Query: 256 MNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT---R 310
+ + QE+ V I+ T N+ L A L+R GR ++ ++ PT R
Sbjct: 369 IT-------------WMQEKTSPVFIVATANNVQILPAELLRKGRFDEIFFLNLPTESER 415
Query: 311 EDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 363
+D V R + + D+ L QS +F GA +V +D + + S
Sbjct: 416 QDIFRVHLQRLRPSRLREFDLSLLAR----QSQNFSGAEIEQVINDAMHQAFS 464
>gi|289191993|ref|YP_003457934.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22]
gi|288938443|gb|ADC69198.1| AAA ATPase central domain protein [Methanocaldococcus sp. FS406-22]
Length = 371
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 111/241 (46%), Gaps = 38/241 (15%)
Query: 159 PLILGIWGGK--------GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 210
P + G W K G GK+ + + + I++ A EL + G+ +K+IR+
Sbjct: 146 PKLFGEWAPKNVLFYGPPGTGKTLMARALATETNSSFILVKAPELIGEHVGDASKMIREL 205
Query: 211 YREAADIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 269
Y+ A++ C +FI++LDA G R + + V +++VNA L +L G
Sbjct: 206 YQRASE----NAPCIVFIDELDAIGLSREYQSLRGDV-SEVVNALL---------TELDG 251
Query: 270 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF-YWAPTREDRIGVCSGIFRTDNVP- 327
+ +EN V I N+ + L P IR E+ + P E+R+ + + +P
Sbjct: 252 I---KENEGVVTIAATNNPAML-DPAIRSRFEEEIEFKLPNDEERLKIMELYAKKMPIPV 307
Query: 328 KEDIVKLVDT---FPGQSID---FFGALRARVYDDEVRKWISEVGIERIGKRLV-NSKEG 380
K ++ + V+ F G+ I AL + +D R +IS+ +E K++V N +E
Sbjct: 308 KANLKEFVEKTKGFSGRDIKEKFLKPALHKAILED--RDYISKEDLEWALKKIVSNRREA 365
Query: 381 P 381
P
Sbjct: 366 P 366
>gi|239611652|gb|EEQ88639.1| 26S protease regulatory subunit S10B [Ajellomyces dermatitidis
ER-3]
Length = 392
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 167 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 225
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 226 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 274
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P + R+ + SG+ + E
Sbjct: 275 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHASGVAIEGEIDFE 332
Query: 330 DIVKLVDTFPGQSI 343
IVK+ D G +
Sbjct: 333 SIVKMSDGLNGADL 346
>gi|67521818|ref|XP_658970.1| hypothetical protein AN1366.2 [Aspergillus nidulans FGSC A4]
gi|40746393|gb|EAA65549.1| hypothetical protein AN1366.2 [Aspergillus nidulans FGSC A4]
Length = 628
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 18/167 (10%)
Query: 140 DKVVVHITKNFLNLP-NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 198
D V++ +T+ + L NV+ P + + G G GK+ A++G+ I +SA + SG
Sbjct: 78 DLVILPMTRPQVYLASNVQPPRGVLLHGPPGCGKTMIANAFAAELGVPFISISAPSIVSG 137
Query: 199 NAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 258
+GE K +R+ + EA K+ C +FI+++DA + +Q + ++V A L+
Sbjct: 138 MSGESEKALREHFEEA----KRLAPCLIFIDEIDAITPKR-ENSQREMEKRIV-AQLLTC 191
Query: 259 ADNPTNVQLPGMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGRMEK 303
D+ E+ P+IV N +L A L R GR +K
Sbjct: 192 MDD---------LALEKTDGKPVIVLAATNRPDSLDAALRRGGRFDK 229
Score = 41.2 bits (95), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 85/204 (41%), Gaps = 20/204 (9%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+ P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 399 ITAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAVRQVFVRAR 458
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
I C +F ++LDA R T + ++VN L + ++ Q G+Y
Sbjct: 459 SSIP----CVIFFDELDALVPRRDDTLS-EASARVVNTLLTELDGLGSSRQ--GIY---- 507
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP-KEDIV 332
+I N + ++R GR+E + P+ +R+ + + R + ED+
Sbjct: 508 -----VIAATNRPDIIDPAMLRPGRLETLLFVNLPSPLERVEILQTLVRRLPIEFNEDLR 562
Query: 333 KLVDTFPGQS-IDFFGALRARVYD 355
+L + G S D LR Y+
Sbjct: 563 RLAEECEGFSGADLTSLLRRAGYN 586
>gi|428300919|ref|YP_007139225.1| AAA ATPase [Calothrix sp. PCC 6303]
gi|428237463|gb|AFZ03253.1| AAA ATPase central domain protein [Calothrix sp. PCC 6303]
Length = 502
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 83/201 (41%), Gaps = 30/201 (14%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
LP+ + L++GI +G GKS + + + + + G L +G GE R R
Sbjct: 256 LPHPRGLLLVGI---QGTGKSLSAKAIAHNWHLPLLRLDVGRLFAGLVGES----ESRTR 308
Query: 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 272
+ + + C L+I+++D +G N++ + +A
Sbjct: 309 QMIQVAEALAPCILWIDEIDKSFAGLGSKGDAGTTNRVFGTFITWLA------------- 355
Query: 273 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS---GIFRTDNVP 327
E+ V ++ T ND L ++R GR ++ ++ PT+ +R + R+ N+
Sbjct: 356 -EKTSPVFVVATANDIQALPPEMLRKGRFDEIFFIGLPTQVERKAIFEVHLSRLRSHNLK 414
Query: 328 KEDIVKLVDTFPGQSIDFFGA 348
DI +L P DF GA
Sbjct: 415 NYDIDRLAYETP----DFSGA 431
>gi|429855222|gb|ELA30190.1| 26s protease regulatory subunit s10b [Colletotrichum
gloeosporioides Nara gc5]
Length = 391
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 86/194 (44%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P R+ + SG+ + E
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIALPNEVGRLEILKIHASGVVTEGEIDFE 331
Query: 330 DIVKLVDTFPGQSI 343
+VK+ D G +
Sbjct: 332 SVVKMSDGLNGADL 345
>gi|328352696|emb|CCA39094.1| peroxin-1 [Komagataella pastoris CBS 7435]
Length = 1131
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 110/256 (42%), Gaps = 39/256 (15%)
Query: 115 YISQGLRQYSLDNT------LDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGI--WG 166
YI Q LR L + + GL A + + + + TK + + L GI +G
Sbjct: 755 YIPQSLRGVKLQKSDVRWDDIGGLRDAKSILLETLEWPTKYAPIFSSCPLRLRSGILLYG 814
Query: 167 GKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL 226
G GK+ V A+ G+N I + E+ + G + +R+ + A + K C L
Sbjct: 815 YPGCGKTLLASAVAAQCGLNFISIKGPEILNKYIGASEQSVRELFERA----QAAKPCIL 870
Query: 227 FINDLDAGAGRMG----GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282
F ++ D+ A + G G T V NQM+ T M+ A+ L G+Y R +I
Sbjct: 871 FFDEFDSIAPKRGHDSTGVTDRVV-NQML--TQMDGAEG-----LDGVYVLAATSRPDLI 922
Query: 283 VTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPG 340
+ L+R GR++K P +DR+ + + R NV K V L + G
Sbjct: 923 DSA---------LLRPGRLDKSVICDMPDFDDRLDILQSVTRNMNVSKS--VNL-SSVAG 970
Query: 341 QSIDFFGA-LRARVYD 355
+ F GA L+A Y+
Sbjct: 971 ECSGFSGADLQALAYN 986
>gi|242093540|ref|XP_002437260.1| hypothetical protein SORBIDRAFT_10g023770 [Sorghum bicolor]
gi|241915483|gb|EER88627.1| hypothetical protein SORBIDRAFT_10g023770 [Sorghum bicolor]
Length = 398
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 227
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ + C +F++++DA GR ++ T ++ + TLM + + QL G +E
Sbjct: 228 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DE 274
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P + R+ V GI + + E
Sbjct: 275 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQGRMEVLKIHAVGIAKHGEIDYE 334
Query: 330 DIVKLVDTFPGQSI 343
++ L + F G +
Sbjct: 335 AVINLAEGFNGADL 348
>gi|154279056|ref|XP_001540341.1| 26S protease regulatory subunit S10B [Ajellomyces capsulatus NAm1]
gi|150412284|gb|EDN07671.1| 26S protease regulatory subunit S10B [Ajellomyces capsulatus NAm1]
Length = 392
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 167 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 225
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 226 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 274
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P + R+ + SG+ + E
Sbjct: 275 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHASGVAIEGEIDFE 332
Query: 330 DIVKLVDTFPGQSI 343
IVK+ D G +
Sbjct: 333 SIVKMSDGLNGADL 346
>gi|226467157|emb|CAX76059.1| Tat-binding protein 10 [Schistosoma japonicum]
gi|226467161|emb|CAX76061.1| Tat-binding protein 10 [Schistosoma japonicum]
gi|226467163|emb|CAX76062.1| Tat-binding protein 10 [Schistosoma japonicum]
Length = 430
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 114/265 (43%), Gaps = 50/265 (18%)
Query: 130 DGLYIAPAFMDKVVVHITKNFLNLPNVKVPLI---LGI--------WGGKGQGKSFQCEL 178
D Y +DK + I K + LP VK P + LGI +G G GK+
Sbjct: 169 DSTYEMIGGLDKQIKEI-KEVIELP-VKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 226
Query: 179 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRY---REAADIIKKGKMCCLFINDLDA-G 234
V I +S EL GE A+++R+ + RE A I +F++++D+ G
Sbjct: 227 VAHHTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSI-------IFMDEVDSIG 279
Query: 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 294
+ R+ T Q L+N QL G E + +I+ N L +
Sbjct: 280 STRLESGTGGDSEVQRTMLELLN--------QLDGF---EPKQNIKVIMATNRIDILDSA 328
Query: 295 LIRDGRMEKF--YWAPTREDRIGVCSGIFRTDNVPKE-DIVKLVDTFPGQSIDFFGALRA 351
L+R GR+++ + AP E R+ + R N+ ++ D+ KL ++ PG S GA
Sbjct: 329 LLRPGRIDRKIEFPAPNEEARLDILRIHSRKMNLTRDIDLRKLAESMPGAS----GA--- 381
Query: 352 RVYDDEVRKWISEVGIERIGKRLVN 376
EV+ +E G+ + +R V+
Sbjct: 382 -----EVKGVCTEAGMYALRERRVH 401
>gi|350416782|ref|XP_003491100.1| PREDICTED: peroxisome biogenesis protein 1-like [Bombus impatiens]
Length = 1028
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 19/165 (11%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + + + G+N I + EL S G + +R + A + K
Sbjct: 778 LYGMPGTGKTMLAKAIANECGVNLISVKGPELLSKYVGVSEESVRNVFERAL----RAKP 833
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C LF ++ D+ A R G + V +++VN L Q+ G+ ++E V ++
Sbjct: 834 CVLFFDEFDSLAPRRGHDST-GVTDRVVNQLL---------TQMDGVEDRE---GVAVVA 880
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNV 326
+ L L+R GR++K + P DR + + +T N+
Sbjct: 881 ASSRPDLLDPALLRPGRLDKALYCPLPNEVDREEILIALCKTQNI 925
>gi|341896869|gb|EGT52804.1| hypothetical protein CAEBREN_04435 [Caenorhabditis brenneri]
Length = 268
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 99/218 (45%), Gaps = 29/218 (13%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A++IR+ + A D +
Sbjct: 51 LFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 106
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + QL G + +V +I+
Sbjct: 107 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DSLGKVKVIM 156
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + + I + + E +VKL D
Sbjct: 157 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDG 216
Query: 338 FPGQSID-------FFG--ALRARVYDDEVRKWISEVG 366
F + F A R V D++ K + +VG
Sbjct: 217 FSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKVG 254
>gi|254572355|ref|XP_002493287.1| Peroxisome biosynthesis protein PAS1 [Komagataella pastoris GS115]
gi|238033085|emb|CAY71108.1| Peroxisome biosynthesis protein PAS1 [Komagataella pastoris GS115]
Length = 1121
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 110/256 (42%), Gaps = 39/256 (15%)
Query: 115 YISQGLRQYSLDNT------LDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGI--WG 166
YI Q LR L + + GL A + + + + TK + + L GI +G
Sbjct: 745 YIPQSLRGVKLQKSDVRWDDIGGLRDAKSILLETLEWPTKYAPIFSSCPLRLRSGILLYG 804
Query: 167 GKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL 226
G GK+ V A+ G+N I + E+ + G + +R+ + A + K C L
Sbjct: 805 YPGCGKTLLASAVAAQCGLNFISIKGPEILNKYIGASEQSVRELFERA----QAAKPCIL 860
Query: 227 FINDLDAGAGRMG----GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282
F ++ D+ A + G G T V NQM+ T M+ A+ L G+Y R +I
Sbjct: 861 FFDEFDSIAPKRGHDSTGVTDRVV-NQML--TQMDGAEG-----LDGVYVLAATSRPDLI 912
Query: 283 VTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPG 340
+ L+R GR++K P +DR+ + + R NV K V L + G
Sbjct: 913 DSA---------LLRPGRLDKSVICDMPDFDDRLDILQSVTRNMNVSKS--VNL-SSVAG 960
Query: 341 QSIDFFGA-LRARVYD 355
+ F GA L+A Y+
Sbjct: 961 ECSGFSGADLQALAYN 976
>gi|357491483|ref|XP_003616029.1| Cell division protease ftsH-like protein [Medicago truncatula]
gi|355517364|gb|AES98987.1| Cell division protease ftsH-like protein [Medicago truncatula]
Length = 689
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 71/315 (22%), Positives = 140/315 (44%), Gaps = 43/315 (13%)
Query: 36 KSLKKVSSKVSQQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDT 95
K+L KV ++S+ L + +S +++++S A L ++ + +D G+++T
Sbjct: 155 KALVKVG-RLSESEFLKTLLRAISNSAKKEESSIGGIAALT-NVGEPTRD-----GILET 207
Query: 96 LFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHIT--KNFLNL 153
AP + ++++ + + L + + + G+ A A ++++V ++ K+F L
Sbjct: 208 T-SAPTD------MVAALEEVQPSLETSTKLSDMKGVGEAKAELEEIVDYLKDPKHFTRL 260
Query: 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYRE 213
K+P + I G G GK+ + + + S E E G A+ +R +
Sbjct: 261 GG-KLPKGILIVGPPGTGKTMLARAIAGEAEVPFFSTSGREFEEMVVGVGAQRVRDLFAA 319
Query: 214 AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 273
A KK C +FI+++DA G++ N+QM M + N V+L G+
Sbjct: 320 A----KKRLPCIIFIDEIDAFGGKLNS------NDQM----YMKLTLNQMLVELDGL--- 362
Query: 274 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVC----SGIFRTDNVP 327
++N + +I + L+R GR ++ P E R + S + + DNV
Sbjct: 363 KQNEGIIVIGATKSHKLIDEALLRHGRFDRLVVVRKPDEEGRREILEYHMSKVLKADNV- 421
Query: 328 KEDIVKLVDTFPGQS 342
D++K+ PG S
Sbjct: 422 --DLMKIAQFTPGFS 434
>gi|225562323|gb|EEH10602.1| 26S protease regulatory subunit [Ajellomyces capsulatus G186AR]
gi|325089508|gb|EGC42818.1| 26S protease regulatory subunit S10B [Ajellomyces capsulatus H88]
Length = 392
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 167 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 225
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 226 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 274
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P + R+ + SG+ + E
Sbjct: 275 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHASGVAIEGEIDFE 332
Query: 330 DIVKLVDTFPGQSI 343
IVK+ D G +
Sbjct: 333 SIVKMSDGLNGADL 346
>gi|365986426|ref|XP_003670045.1| hypothetical protein NDAI_0D04890 [Naumovozyma dairenensis CBS 421]
gi|343768814|emb|CCD24802.1| hypothetical protein NDAI_0D04890 [Naumovozyma dairenensis CBS 421]
Length = 870
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 87/198 (43%), Gaps = 24/198 (12%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+ P + +WG G GK+ + V + N I + EL + GE + IRQ + A
Sbjct: 597 ISAPAGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFTRA- 655
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ C +F ++LDA R T+ ++++VN L +L G+
Sbjct: 656 ---RASVPCVIFFDELDALVPRR-DTSLSESSSRVVNTLL---------TELDGL----- 697
Query: 276 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKEDI 331
N R I V G N + ++R GR++K F P ++++ + + + R++ P D
Sbjct: 698 NDRRGIFVVGATNRPDMIDPAMLRPGRLDKTLFIELPNYDEKLDIITTLARSNGTPLADD 757
Query: 332 VKLVDTFPGQSI-DFFGA 348
V+ + + +F GA
Sbjct: 758 VQFSEIIKDERCRNFSGA 775
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 23/198 (11%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V+ P + + G G GK+ + ++ + I +SA + SG +GE K IR+ + EA
Sbjct: 255 VEPPRGVLLHGPPGCGKTSIANALAGELKVPFISISAPSVVSGMSGESEKKIRELFEEA- 313
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K C +F +++DA + G Q + ++V A L+ D T Q G
Sbjct: 314 ---KALAPCLMFFDEIDAITPKRDGGAQREMERRIV-AQLLTSMDELTMEQTNGK----- 364
Query: 276 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTDNVPKE-D 330
P+IV G N +L A L R GR ++ P R+ + + + + D
Sbjct: 365 ----PVIVIGATNRPDSLDAALRRAGRFDREICLNVPNEVSRLHILKKMSQNLKIDGSID 420
Query: 331 IVKLVDTFPGQSIDFFGA 348
+KL PG F GA
Sbjct: 421 FLKLAKLTPG----FVGA 434
>gi|335438252|ref|ZP_08561000.1| proteasome-activating nucleotidase [Halorhabdus tiamatea SARL4B]
gi|334892446|gb|EGM30679.1| proteasome-activating nucleotidase [Halorhabdus tiamatea SARL4B]
Length = 403
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+ G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 187 LHGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----ELARQHEP 242
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
LFI+++DA A + T T + V T+M + L M +E + II
Sbjct: 243 SVLFIDEIDAIAAKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEIRIIA 292
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 293 ATNRFDMLDRAILRPGRFDRLIEVP 317
>gi|392564744|gb|EIW57922.1| AAA-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 707
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 93/216 (43%), Gaps = 34/216 (15%)
Query: 98 QAPMESGTHYAVMS---SYDYISQGLRQYSL---DNTLDG---LYIAPAFMDKVVVHITK 148
+AP E G+ A +S S DY R L D ++ L P ++ +H
Sbjct: 33 RAPGEEGSKRAKLSGSISKDYAPPTTRLSDLGGVDQCVEKMLELVAMPLCHPEIYLHT-- 90
Query: 149 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 208
V+ P + + G G GK+ + ++G+ I +SA + SG +GE K +R
Sbjct: 91 ------GVQPPRGVLLHGPPGCGKTMLAHAIAGELGVPFINISAPSVVSGMSGESEKTLR 144
Query: 209 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 268
+ EA K+ C LFI+++DA + + Q + ++V L + D
Sbjct: 145 DTFDEA----KRVAPCLLFIDEIDAITPKR-ESAQREMERRIVAQFLTCMDD-------- 191
Query: 269 GMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGRME 302
+ E+N P+IV G N +L A L R GR +
Sbjct: 192 --MSWEKNDNKPVIVIGATNRPDSLDAALRRAGRFD 225
Score = 38.1 bits (87), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 74/176 (42%), Gaps = 24/176 (13%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+WG G GK+ + V + N I + EL + GE + +RQ + A +
Sbjct: 441 LWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESERAVRQVFSRA----RASSP 496
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F ++LDA R + + + ++VN L +L G+ ++ V +I
Sbjct: 497 CVIFFDELDALVPRRDDSMSES-SARVVNTLL---------TELDGLDARKS---VYVIA 543
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRT-----DNVPKEDIV 332
N + + R GR++K + P+ +R + + RT DN +D +
Sbjct: 544 ATNRPDMIDPAMCRPGRLDKLLYVDLPSSVERAEIIRKMTRTVPLGDDNASAQDAI 599
>gi|328773002|gb|EGF83039.1| hypothetical protein BATDEDRAFT_33940 [Batrachochytrium
dendrobatidis JAM81]
Length = 402
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 86/189 (45%), Gaps = 20/189 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V A + N + + + + GE A+LIR+ + A
Sbjct: 177 IKPPKGVLLYGPPGTGKTLLARAVAATLECNFLKVVSSAIVDKYIGESARLIREMFGYA- 235
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 236 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 284
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+ +I+ N TL L+R GR+++ P + R+ V S I + + E
Sbjct: 285 --QTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQGRLEVIKIHASTITKHGEIDYE 342
Query: 330 DIVKLVDTF 338
IVKL + F
Sbjct: 343 AIVKLSEGF 351
>gi|256016691|emb|CAR63641.1| putative 26S proteasome regulatory chain 4 [Angiostrongylus
cantonensis]
Length = 435
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 73/151 (48%), Gaps = 16/151 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V I + +L N+G+ AKL+R+ ++ A K+
Sbjct: 219 LYGEPGTGKTLLAKAVANSTSATFIRATGADLVQKNSGDGAKLVRELFKMA----KESAP 274
Query: 224 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282
C +F++++DA G R +++ Q V TL+ + + QL G E V +I
Sbjct: 275 CIVFLDEIDAVGTKRFDTSSR---GEQEVQRTLLELLN-----QLDGF---ESRGDVKVI 323
Query: 283 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 313
+ N +L + L+R GR+++ P +++
Sbjct: 324 LATNRIDSLDSALLRPGRIDRKIELPKPDEK 354
>gi|71019677|ref|XP_760069.1| hypothetical protein UM03922.1 [Ustilago maydis 521]
gi|46099715|gb|EAK84948.1| hypothetical protein UM03922.1 [Ustilago maydis 521]
Length = 288
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 63 IKPPKGVLLYGPPGTGKTLLARAVASTLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 121
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 122 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 170
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKE 329
+ +I+ N TL L+R GR+++ P + R+ + + + + + E
Sbjct: 171 --KTKVIMATNRPDTLDPALMRPGRIDRKIEIPLPNEQSRLEILKIHTRPVAKKEELDYE 228
Query: 330 DIVKLVDTFPGQSI 343
IVKL D F G +
Sbjct: 229 AIVKLSDGFNGADL 242
>gi|348513282|ref|XP_003444171.1| PREDICTED: peroxisome biogenesis factor 1 [Oreochromis niloticus]
Length = 1221
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 90/207 (43%), Gaps = 25/207 (12%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V G+N I + EL S G K +R ++ A + K
Sbjct: 843 LYGAPGTGKTLLARAVSKDSGMNFISIKGPELLSKYIGASEKGVRDVFQRA----QAAKP 898
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C LF ++ DA A R G + V +++VN L + D +Q G+Y ++
Sbjct: 899 CILFFDEFDALAPRRGHDST-GVTDRVVNQLLTQL-DGVEGLQ--GVY----------VL 944
Query: 284 TGNDFSTLYAP-LIRDGRMEKFYWAPTR--EDRIGVCSGIFRTDNVPKEDIVKLVDTFPG 340
L P L+R GR++K + P E R+ + + T VP V L +
Sbjct: 945 AATSRPDLIDPALLRPGRLDKSLYCPPPDLEARVEILKAL--TAGVPLAPDVDL-EQLAA 1001
Query: 341 QSIDFFGA-LRARVYDDEVRKWISEVG 366
+ F GA L+A +Y+ ++ + +G
Sbjct: 1002 ATAQFTGADLKALLYNAQLEAVHNSIG 1028
>gi|427417138|ref|ZP_18907321.1| AAA+ family ATPase [Leptolyngbya sp. PCC 7375]
gi|425759851|gb|EKV00704.1| AAA+ family ATPase [Leptolyngbya sp. PCC 7375]
Length = 511
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 86/200 (43%), Gaps = 27/200 (13%)
Query: 151 LNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 210
LNL K LI+GI +G GKS + + + I + + AG L G K
Sbjct: 276 LNLTPPKGILIVGI---QGCGKSLAAKTIAREWQIPLLKLDAGRLYDKYVGGSEK----N 328
Query: 211 YREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM 270
+R+A + +K L+I++++ MGGT + + +
Sbjct: 329 FRQAVSLAEKMAPAVLWIDEIEKT---MGGTQSMDTDGGLSRRLFGSFL----------T 375
Query: 271 YNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS-GIFRTDNVP 327
+ QE++ V ++ T ND S L L+R GR ++ ++ P +DRI + + + R P
Sbjct: 376 WLQEKSQEVFVVATANDISQLPPELLRKGRFDEIFFVDLPDAQDRIKILTIHLNRHHQTP 435
Query: 328 ----KEDIVKLVDTFPGQSI 343
++V+ + F G I
Sbjct: 436 GNFNMAELVQATEGFSGAEI 455
>gi|257051455|ref|YP_003129288.1| proteasome-activating nucleotidase [Halorhabdus utahensis DSM
12940]
gi|256690218|gb|ACV10555.1| 26S proteasome subunit P45 family [Halorhabdus utahensis DSM 12940]
Length = 403
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+ G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 187 LHGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----ELARQHEP 242
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
LFI+++DA A + T T + V T+M + L M +E + II
Sbjct: 243 SVLFIDEIDAIAAKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGEIRIIA 292
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 293 ATNRFDMLDRAILRPGRFDRLIEVP 317
>gi|221059143|ref|XP_002260217.1| peptidase [Plasmodium knowlesi strain H]
gi|193810290|emb|CAQ41484.1| peptidase, putative [Plasmodium knowlesi strain H]
Length = 702
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 17/152 (11%)
Query: 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 216
K+P + + G G GK+ + + + I S E E G A+ IR+ ++ A
Sbjct: 281 KLPKGILLSGEPGTGKTLIARAIAGEANVPFIQASGSEFEEMFVGVGARRIRELFQAA-- 338
Query: 217 IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 276
KK C +FI+++DA G+ + +N V TL N V+L G E+N
Sbjct: 339 --KKHAPCIVFIDEIDA-----VGSKRSNRDNSAVRMTL-----NQLLVELDGF---EQN 383
Query: 277 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
+ +I N +L L+R GR++K P
Sbjct: 384 EGIVVICATNFPQSLDKALVRPGRLDKTIVVP 415
>gi|343427180|emb|CBQ70708.1| related to RIX7-AAA-type ATPase required for biogenesis and nuclear
export of 60S ribosomal subunits [Sporisorium reilianum
SRZ2]
Length = 878
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
VK P + + G G GK+ V ++G+ + +SA + SG +GE K IR + EAA
Sbjct: 191 VKPPRGVLLHGPPGCGKTMLAGAVAGELGVPFLSISAPSVVSGTSGESEKTIRDTFDEAA 250
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 260
I C LFI+++DA + T Q + ++V L ++ D
Sbjct: 251 SIAP----CILFIDEIDAITPKR-ETAQREMERRIVAQLLTSLDD 290
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 72/173 (41%), Gaps = 21/173 (12%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+WG G GK+ + V + N I + EL + GE K +RQ + A +
Sbjct: 600 LWGPPGCGKTLLAKAVANESHANFISVKGPELLNKYVGESEKAVRQVFARA----RTSSP 655
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F ++LDA R + + ++++VN L + + VQ Y +I
Sbjct: 656 CVIFFDELDALVPRRDDSLSES-SSRVVNTLLTELDGLESRVQ---TY---------VIA 702
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDIVKL 334
N + + R GR++K + P ++R+ + I T P D V L
Sbjct: 703 ATNRPDMIDPAMCRPGRLDKLLYVDLPKPDERLEILKTI--TSKTPLSDDVDL 753
>gi|448312022|ref|ZP_21501775.1| ATPase AAA [Natronolimnobius innermongolicus JCM 12255]
gi|445603643|gb|ELY57605.1| ATPase AAA [Natronolimnobius innermongolicus JCM 12255]
Length = 743
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + N I + +L S GE K IRQ +R+A ++
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKA----RQVSP 556
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+F ++LDA A GG T V+ ++VN L +L G+ EE V +I
Sbjct: 557 TVIFFDELDALAPGRGGETGSNVSERVVNQLL---------TELDGL---EEMENVMVIG 604
Query: 284 TGNDFSTLYAPLIRDGRMEKF 304
N + L+R GR ++
Sbjct: 605 ATNRPDMIDPALLRSGRFDRL 625
>gi|121709954|ref|XP_001272593.1| proteasome regulatory particle subunit Rpt4, putative [Aspergillus
clavatus NRRL 1]
gi|119400743|gb|EAW11167.1| proteasome regulatory particle subunit Rpt4, putative [Aspergillus
clavatus NRRL 1]
Length = 393
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + M N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSMETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRTD-NVPKE 329
+ II+ N TL L+R GR+++ P R + I + S + + ++ E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEIIKIHSSTVQLEGDIDFE 333
Query: 330 DIVKLVDTFPGQSI 343
+VK+ D G +
Sbjct: 334 SVVKMSDGLNGADL 347
>gi|448409675|ref|ZP_21574802.1| proteasome-activating nucleotidase [Halosimplex carlsbadense 2-9-1]
gi|445672446|gb|ELZ25018.1| proteasome-activating nucleotidase [Halosimplex carlsbadense 2-9-1]
Length = 433
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 14/144 (9%)
Query: 165 WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC 224
G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 218 HGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----ELARQHEPS 273
Query: 225 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVT 284
LFI+++DA A + T T + V T+M + L M E+ V II
Sbjct: 274 VLFIDEIDAIAAKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFEDRGEVRIIAA 323
Query: 285 GNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 324 TNRFDMLDRAILRPGRFDRLIEVP 347
>gi|330835721|ref|YP_004410449.1| AAA family ATPase [Metallosphaera cuprina Ar-4]
gi|329567860|gb|AEB95965.1| AAA family ATPase, CDC48 subfamily protein [Metallosphaera cuprina
Ar-4]
Length = 768
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 16/160 (10%)
Query: 149 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 208
++ V+ P + ++G G GK+ + V + G N I + E+ S GE + IR
Sbjct: 488 DYYETAGVEPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEVLSKWVGESERAIR 547
Query: 209 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 268
+ +R+A + +F +++DA A G ++ V ++VN L ++
Sbjct: 548 EIFRKA----RMYAPSVIFFDEIDAVAPMRGISSDSGVTERLVNQLL---------AEMD 594
Query: 269 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
G+ N + V I+ N L L+R GR EK + P
Sbjct: 595 GIENLDN---VVIVAATNRPDILDPALLRPGRFEKLVYVP 631
>gi|256048950|ref|XP_002569488.1| 26S protease regulatory subunit [Schistosoma mansoni]
gi|353231858|emb|CCD79213.1| putative 26s protease regulatory subunit [Schistosoma mansoni]
Length = 431
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 114/265 (43%), Gaps = 50/265 (18%)
Query: 130 DGLYIAPAFMDKVVVHITKNFLNLPNVKVPLI---LGI--------WGGKGQGKSFQCEL 178
D Y +DK + I K + LP VK P + LGI +G G GK+
Sbjct: 169 DSTYEMIGGLDKQIKEI-KEVIELP-VKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 226
Query: 179 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRY---REAADIIKKGKMCCLFINDLDA-G 234
V I +S EL GE A+++R+ + RE A I +F++++D+ G
Sbjct: 227 VAHHTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSI-------IFMDEVDSIG 279
Query: 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 294
+ R+ T Q L+N QL G E + +I+ N L +
Sbjct: 280 STRLESGTGGDSEVQRTMLELLN--------QLDGF---EPKQNIKVIMATNRIDILDSA 328
Query: 295 LIRDGRMEKF--YWAPTREDRIGVCSGIFRTDNVPKE-DIVKLVDTFPGQSIDFFGALRA 351
L+R GR+++ + AP E R+ + R N+ ++ D+ KL ++ PG S GA
Sbjct: 329 LLRPGRIDRKIEFPAPNEEARLDILKIHSRKMNLTRDIDLRKLAESMPGAS----GA--- 381
Query: 352 RVYDDEVRKWISEVGIERIGKRLVN 376
EV+ +E G+ + +R V+
Sbjct: 382 -----EVKGVCTEAGMYALRERRVH 401
>gi|189193421|ref|XP_001933049.1| 26S protease regulatory subunit S10B [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|330906098|ref|XP_003295352.1| hypothetical protein PTT_00527 [Pyrenophora teres f. teres 0-1]
gi|187978613|gb|EDU45239.1| 26S protease regulatory subunit S10B [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|311333431|gb|EFQ96552.1| hypothetical protein PTT_00527 [Pyrenophora teres f. teres 0-1]
Length = 393
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRTD-NVPKE 329
+ II+ N TL L+R GR+++ P R + + + S TD + E
Sbjct: 276 --QTKIIMATNRPDTLDPALLRAGRLDRKLEIPLPNEVGRLEILKIHSASVVTDGEIDFE 333
Query: 330 DIVKLVDTFPGQSI 343
IVK+ D G +
Sbjct: 334 SIVKMSDGMNGADL 347
>gi|71005554|ref|XP_757443.1| hypothetical protein UM01296.1 [Ustilago maydis 521]
gi|46096926|gb|EAK82159.1| hypothetical protein UM01296.1 [Ustilago maydis 521]
Length = 878
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 5/105 (4%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
VK P + + G G GK+ V ++G+ + +SA + SG +GE K IR + EAA
Sbjct: 182 VKPPRGVLLHGPPGCGKTMLAGAVAGELGVPFLSISAPSVVSGTSGESEKTIRDTFDEAA 241
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 260
I C LFI+++DA + T Q + ++V L ++ D
Sbjct: 242 SIAP----CILFIDEIDAITPKR-ETAQREMERRIVAQLLTSLDD 281
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 21/173 (12%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+WG G GK+ + V + N I + EL + GE K +RQ + A +
Sbjct: 599 LWGPPGCGKTLLAKAVANESRANFISVKGPELLNKYVGESEKAVRQVFARA----RTSSP 654
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F ++LDA R + + ++++VN L + + VQ Y +I
Sbjct: 655 CVIFFDELDALVPRRDDSLSES-SSRVVNTLLTELDGLESRVQ---TY---------VIA 701
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDIVKL 334
N + + R GR++K + P ++R + I T P D V L
Sbjct: 702 ATNRPDMIDPAMCRPGRLDKLLYVDLPKPDERYEILKTI--TSKTPLSDEVNL 752
>gi|448726352|ref|ZP_21708759.1| AAA family ATPase, partial [Halococcus morrhuae DSM 1307]
gi|445795172|gb|EMA45703.1| AAA family ATPase, partial [Halococcus morrhuae DSM 1307]
Length = 276
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 85/197 (43%), Gaps = 26/197 (13%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
++ P + ++G G GK+ + V + N I + +L S GE K IRQ +++A
Sbjct: 28 IEPPAGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFKKAR 87
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ +F ++LD+ A GG V+ ++VN L +L G+ E+
Sbjct: 88 QV----SPTVIFFDELDSLAPSRGGDVGSNVSERVVNQLL---------TELDGL---ED 131
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP------ 327
V +I N + LIR GR ++ P+ E R + S TD+ P
Sbjct: 132 MKNVMVIAATNRPDMIDPALIRSGRFDRLVMVGQPSIEGRERILS--IHTDDTPLAADVS 189
Query: 328 KEDIVKLVDTFPGQSID 344
+I ++ D + G ++
Sbjct: 190 LREIAEITDGYVGSDLE 206
>gi|390342478|ref|XP_785648.3| PREDICTED: nuclear valosin-containing protein [Strongylocentrotus
purpuratus]
Length = 976
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 76/171 (44%), Gaps = 19/171 (11%)
Query: 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII 218
P IL + G G GK+ + + + GIN I + EL + GE + +RQ ++ A
Sbjct: 692 PGIL-LAGPPGCGKTLLAKAIANESGINFISVKGPELMNMYVGESERAVRQCFQRA---- 746
Query: 219 KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 278
+ C +F ++LDA R + + ++VN L ++ G+ E +
Sbjct: 747 RNSSPCVIFFDELDALCPRRSDVSDSGSSARVVNQLL---------TEMDGL---EARKQ 794
Query: 279 VPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP 327
V I+ N + ++R GRM+K + P+ +DRI + I + P
Sbjct: 795 VFIMGATNRPDIIDPAVLRPGRMDKILYVGIPSNQDRIAILRTITKNGCKP 845
>gi|428776831|ref|YP_007168618.1| AAA ATPase [Halothece sp. PCC 7418]
gi|428691110|gb|AFZ44404.1| AAA ATPase central domain protein [Halothece sp. PCC 7418]
Length = 515
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 27/173 (15%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
+P K L++GI +G GKS + + + + + + G L G GE R R
Sbjct: 250 IPTPKGLLLVGI---QGTGKSLSAKTIAHEWRVPLLKLDTGRLFGGIVGES----ESRVR 302
Query: 213 EAADIIKKGKMCCLFINDLDAGAGRM-GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 271
+ + + C L+I+++D G + G + + +Q V +L+ +
Sbjct: 303 QMIQLSEAMSPCILWIDEIDKAFGSINSGVSGDSGTSQRVFGSLIT-------------W 349
Query: 272 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 322
QE+ V I+ T N+ L A L+R GR ++ ++ PT ++R IFR
Sbjct: 350 MQEKTQPVFIVATANNVEVLPAELLRKGRFDETFFINLPTEKER----KAIFR 398
>gi|1172019|sp|P46463.1|PEX1_PICPA RecName: Full=Peroxisome biosynthesis protein PAS1; AltName:
Full=Peroxin-1
gi|537420|emb|CAA85450.1| PAS1 [Komagataella pastoris]
Length = 1157
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 110/256 (42%), Gaps = 39/256 (15%)
Query: 115 YISQGLRQYSLDNT------LDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGI--WG 166
YI Q LR L + + GL A + + + + TK + + L GI +G
Sbjct: 781 YIPQSLRGVKLQKSDVRWDDIGGLRDAKSILLETLEWPTKYAPIFSSCPLRLRSGILLYG 840
Query: 167 GKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL 226
G GK+ V A+ G+N I + E+ + G + +R+ + A + K C L
Sbjct: 841 YPGCGKTLLASAVAAQCGLNFISIKGPEILNKYIGPSEQSVRELFERA----QAAKPCIL 896
Query: 227 FINDLDAGAGRMG----GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282
F ++ D+ A + G G T V NQM+ T M+ A+ L G+Y R +I
Sbjct: 897 FFDEFDSIAPKRGHDSTGVTDRVV-NQML--TQMDGAEG-----LDGVYVLAATSRPDLI 948
Query: 283 VTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPG 340
+ L+R GR++K P +DR+ + + R NV K V L + G
Sbjct: 949 DSA---------LLRPGRLDKSVICDMPDFDDRLDILQSVTRNMNVSKS--VNL-SSVAG 996
Query: 341 QSIDFFGA-LRARVYD 355
+ F GA L+A Y+
Sbjct: 997 ECSGFSGADLQALAYN 1012
>gi|224138416|ref|XP_002326597.1| predicted protein [Populus trichocarpa]
gi|222833919|gb|EEE72396.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 73/163 (44%), Gaps = 12/163 (7%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P L ++G G GK+ V + G + I++S + +AGE +++R+ + +A
Sbjct: 71 LKWPTGLLLYGPPGTGKTSLVRAVVRECGAHLIVISPHFVHRAHAGESERVLREAFSDAL 130
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
GK +FI+++DA R + V LM+ A+ P++
Sbjct: 131 SHAVAGKPSVIFIDEIDALCHRRDSRREQDVRVASQLFALMD-ANKPSSTS--------- 180
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRM--EKFYWAPTREDRIGV 316
+ +V +I + N + L R GR E PT E+R+ +
Sbjct: 181 SAQVVVIASTNRVDAIDPALRRSGRFDAEIEVTTPTEEERLQI 223
>gi|428164756|gb|EKX33771.1| hypothetical protein GUITHDRAFT_81158 [Guillardia theta CCMP2712]
Length = 655
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 86/197 (43%), Gaps = 29/197 (14%)
Query: 143 VVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 202
++H K +L + P + ++G G GK+ + V + G N I + EL + GE
Sbjct: 378 ILHPQK--FSLLGLSAPTGVLLYGPPGCGKTLVAKAVARESGANFISVKGPELLNKFVGE 435
Query: 203 PAKLIRQRYREAADIIKKGKMCCLFINDLDA---GAGRMGGTTQYTVNNQMVNATLMNIA 259
+ +RQ ++ A+ C +F ++LDA G GG V NQ++
Sbjct: 436 SERAVRQLFQRAS----ASAPCVVFFDELDALCPKRGGEGGVASERVVNQLLT------- 484
Query: 260 DNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVC 317
++ G+ + V +I N + A ++R GR++K + P +R+ +
Sbjct: 485 ------EMDGLNARRS---VFVIAATNRPDMIDAAMLRPGRLDKLLYVRLPKHPERLAIL 535
Query: 318 SGIFRTDNVPKEDIVKL 334
I R +P ++ VKL
Sbjct: 536 RTIAR--KMPIDETVKL 550
>gi|254168540|ref|ZP_04875384.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
gi|197622595|gb|EDY35166.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
Length = 727
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 16/154 (10%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 214
VK+P + ++G G GK+ + V + N I + E S GE K +R+ +R+A
Sbjct: 485 KVKIPKGILLYGPPGTGKTLLAKAVATESEANFISVKGPEFLSKWVGESEKAVREVFRKA 544
Query: 215 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 274
++ +FI+++DA A G V ++V+ L M E
Sbjct: 545 ----RQAAPAVIFIDEIDAIAPMRGRDIGSHVTERVVSQILTE------------MDGLE 588
Query: 275 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
E V +I N L L+R GR ++ + P
Sbjct: 589 ELHNVTVIAATNRPDILDPALLRPGRFDRIVYVP 622
>gi|392565358|gb|EIW58535.1| ATPase [Trametes versicolor FP-101664 SS1]
Length = 400
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V A + N + + + + GE A+++R+ + A
Sbjct: 176 IKPPKGVLLYGPPGTGKTLLARAVAATLNTNFLKVVSSAIVDKYIGESARVVREMFGYA- 234
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 235 ---REHEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 281
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
R +I+ N TL L+R GR+++ P + R+ + + ++ + E
Sbjct: 282 LGRTKLIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHSQPVNKSGEMDYE 341
Query: 330 DIVKLVDTFPGQSI 343
IVKL D F G +
Sbjct: 342 AIVKLSDGFNGADL 355
>gi|428220693|ref|YP_007104863.1| AAA ATPase [Synechococcus sp. PCC 7502]
gi|427994033|gb|AFY72728.1| AAA+ family ATPase [Synechococcus sp. PCC 7502]
Length = 523
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 23/164 (14%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
+PN K L++GI +G GKS + + + + + + +G L G GE R R
Sbjct: 266 IPNPKGVLLVGI---QGTGKSLSAKTIAHEWRLPLLRLDSGRLFGGIVGES----ESRVR 318
Query: 213 EAADIIKKGKMCCLFINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 271
+ +++ C L+I+++D G + + + ++ V A+L+ +
Sbjct: 319 QMIQLVEAIAPCVLWIDEIDKAFGNIHLNSDSDSGTSRRVFASLIT-------------W 365
Query: 272 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR 313
QE+ V I+ T N+ L A L+R GR ++ ++ PT +R
Sbjct: 366 MQEKTTPVFIVATANNVQILPAELLRKGRFDEIFFVNLPTITER 409
>gi|290987216|ref|XP_002676319.1| proteasome subunit [Naegleria gruberi]
gi|284089920|gb|EFC43575.1| proteasome subunit [Naegleria gruberi]
Length = 394
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + A + GE A++IR+ + A
Sbjct: 169 IKAPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVASAIVDKYIGESARIIREMFGYAR 228
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA G+ ++ T ++ + TLM + + QL G +N +
Sbjct: 229 D----HQPCIIFMDEIDAIGGKR--FSEGTSADREIQRTLMELLN-----QLDG-FN--D 274
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS----GIFRTDNVPKE 329
+V I+ N L L+R GR+++ P + R+ + I + + E
Sbjct: 275 VGQVKFIMATNRPDVLDTALMRPGRLDRKIEISLPNEQGRLSILKIHSRSITKHGEIDYE 334
Query: 330 DIVKLVDTFPGQSI 343
IVKL D F G +
Sbjct: 335 AIVKLSDGFNGADL 348
>gi|210076057|ref|XP_505704.2| YALI0F21329p [Yarrowia lipolytica]
gi|199424971|emb|CAG78513.2| YALI0F21329p [Yarrowia lipolytica CLIB122]
Length = 845
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 72/260 (27%), Positives = 111/260 (42%), Gaps = 46/260 (17%)
Query: 139 MDKVVVHITKNFL---NLPNV------KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 189
++KV+ ITK+ L P V +P + + G G GK+ + K + +
Sbjct: 213 IEKVIEQITKSVLVPLTHPEVYKTTGLTMPRGVLLHGPPGCGKTVLANAIANKAQVPFMS 272
Query: 190 MSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 249
+SA + SG +GE K IR+ + EA I C LFI+++DA + G + + +
Sbjct: 273 ISAPSVVSGMSGESEKKIREIFEEARAIAP----CLLFIDEIDAVTPKREGGGR-GMETR 327
Query: 250 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGRM--EKFY 305
+V L I D N E+N P+IV G N + L R GR E
Sbjct: 328 IVAQLLTCIDD----------LNPEKNDFRPVIVLGATNRPDAIDPALRRPGRFDEEIAM 377
Query: 306 WAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDF-FGALRARVY-DDEVRKWIS 363
P R+ R + I R +KL D IDF A+R Y +++ ++
Sbjct: 378 AVPDRKSRELILKAITRP--------LKLND-----DIDFELLAMRTPGYVAADLKALVT 424
Query: 364 EVG---IERIGKRLVNSKEG 380
G +ER K+LV +KE
Sbjct: 425 AAGSMALERAFKQLVENKEA 444
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 23/163 (14%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+WG G GK+ + V ++ N I + EL + GE + IRQ + AA
Sbjct: 607 LWGPPGCGKTLLAKAVASETAANFISVRGPELLNKYVGESERAIRQVFERAA----LSSP 662
Query: 224 CCLFINDLDAGAGRM--GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 281
C +F ++ D+ A R GG+ ++++VN L +L G+ E V +
Sbjct: 663 CIIFFDEFDSLAPRRDDGGSEH---SSRLVNTLL---------TELNGLT---ERRGVYV 707
Query: 282 IVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFR 322
I N + ++R GR++K F P +R + S + R
Sbjct: 708 IAATNRPDIIDPAMVRPGRLDKTLFVGLPDENERFEILSKVCR 750
>gi|19074441|ref|NP_585947.1| 26S PROTEASOME REGULATORY SUBUNIT 10 [Encephalitozoon cuniculi
GB-M1]
gi|19069083|emb|CAD25551.1| 26S PROTEASOME REGULATORY SUBUNIT 10 [Encephalitozoon cuniculi
GB-M1]
Length = 390
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V P + ++G G GK+ +V A M +N + + + L GE +++IR+ + A
Sbjct: 165 VHAPKGVLLYGPPGTGKTLLARIVAATMDVNFLKVVSSALIEKYIGESSRMIREMFAYA- 223
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ C +F++++DA G+ + + + +++ V TLM + + QL G +E
Sbjct: 224 ---RRKAPCIIFMDEIDAIGGKR--SRESSSSDREVQRTLMELLN-----QLDGF---KE 270
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRT-DNVPKE 329
V +I+ N L L+R GR+++ P R++ + + S + + + + +
Sbjct: 271 LDSVKVIMATNRPDILDPALLRPGRLDRKIEIPLPNEQGRKEILKIHSRLMNSIEEIDYD 330
Query: 330 DIVKLVDTFPGQSI 343
+VKL F G +
Sbjct: 331 SLVKLTSGFNGADL 344
>gi|407921499|gb|EKG14641.1| ATPase AAA+ type core [Macrophomina phaseolina MS6]
Length = 394
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 86/194 (44%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 227
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 228 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 276
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P R+ + G+ + E
Sbjct: 277 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIALPNEVGRLEILKIHAGGVQTEGEIDFE 334
Query: 330 DIVKLVDTFPGQSI 343
IVK+ D F G +
Sbjct: 335 SIVKMSDGFNGADL 348
>gi|315425454|dbj|BAJ47117.1| AAA family ATPase [Candidatus Caldiarchaeum subterraneum]
gi|343484290|dbj|BAJ49944.1| AAA family ATPase [Candidatus Caldiarchaeum subterraneum]
Length = 726
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 16/153 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
++ P + ++G G GK+ + V + N I + E+ S GE K +R+ +R+A
Sbjct: 489 IRPPRGILLYGPPGTGKTLLAKAVATESQANFISVKGPEVLSKWVGESEKAVREIFRKA- 547
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ C +F ++LD+ A R G T V +++VN L ++ GM + +
Sbjct: 548 ---RETAPCIIFFDELDSIAPRRGIHTDAGVTDRIVNQLL---------TEMDGMQSLKG 595
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
V ++ N L L+R GR ++ + P
Sbjct: 596 ---VVVLGATNRPDILDPALLRPGRFDRVLYVP 625
>gi|297297857|ref|XP_001099493.2| PREDICTED: 26S protease regulatory subunit S10B-like, partial
[Macaca mulatta]
Length = 352
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 69/140 (49%), Gaps = 14/140 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 186 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 241
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 242 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 291
Query: 284 TGNDFSTLYAPLIRDGRMEK 303
N TL L+R GR+++
Sbjct: 292 ATNRPDTLDPALLRPGRLDR 311
>gi|254166928|ref|ZP_04873782.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
gi|289596082|ref|YP_003482778.1| ATPase AAA [Aciduliprofundum boonei T469]
gi|197624538|gb|EDY37099.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
gi|289533869|gb|ADD08216.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum boonei T469]
Length = 727
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 16/154 (10%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 214
VK+P + ++G G GK+ + V + N I + E S GE K +R+ +R+A
Sbjct: 485 KVKIPKGILLYGPPGTGKTLLAKAVATESEANFISVKGPEFLSKWVGESEKAVREVFRKA 544
Query: 215 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 274
++ +FI+++DA A G V ++V+ L M E
Sbjct: 545 ----RQAAPAVIFIDEIDAIAPMRGRDIGSHVTERVVSQILTE------------MDGLE 588
Query: 275 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
E V +I N L L+R GR ++ + P
Sbjct: 589 ELHNVTVIAATNRPDILDPALLRPGRFDRIVYVP 622
>gi|124087412|ref|XP_001346845.1| AAA ATPase, cell division control protein [Paramecium tetraurelia
strain d4-2]
gi|145474957|ref|XP_001423501.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|50057234|emb|CAH03218.1| AAA ATPase, cell division control protein, putative [Paramecium
tetraurelia]
gi|124390561|emb|CAK56103.1| unnamed protein product [Paramecium tetraurelia]
Length = 632
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 79/190 (41%), Gaps = 21/190 (11%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V+ P + +WG G GK+ + V N I + E+ + GE K IR + A
Sbjct: 404 VRPPAGVLLWGPPGCGKTLLAKAVANASRANFIAVKGPEILNKYVGESEKAIRGLFTRA- 462
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ + C +F +++DA G V ++VN L +L G E+
Sbjct: 463 ---RASQPCIIFFDEIDAICPVRGNEGGGQVTERVVNQLL---------TELDGF---ED 507
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRTDNVPKED 330
+V II N L ++R GR++K + P RED + + D+V ++
Sbjct: 508 RKQVFIIAASNRPDILDPAILRPGRIDKPLYVPLPDESGREDILRTLAKKSPIDDVDFKE 567
Query: 331 IVKLVDTFPG 340
+ K + F G
Sbjct: 568 LAKRCENFTG 577
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 94/225 (41%), Gaps = 44/225 (19%)
Query: 164 IWGGKGQGKSFQ----CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 219
+ G G GK++ C ++ + +N M + E+ + +GE K IRQ +++AA
Sbjct: 150 LTGATGCGKTYLAKAICRDLYQQFKLNIFMKNGAEIVASLSGESEKNIRQLFQQAA---- 205
Query: 220 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 279
+ +FI+D+D AG + N QM + Q+ G +Q N V
Sbjct: 206 QEAPSLVFIDDIDVIAG-----DRDKANKQMEKRVV---------TQIMGSLDQLPN-NV 250
Query: 280 PIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKEDIV-KLVD 336
+I T + L L R GR +K PT E R EDI+ KL+
Sbjct: 251 FLIATTSHPDQLDPALRRSGRFDKEIMITVPTDEQR---------------EDILKKLIK 295
Query: 337 TFPGQSIDFFGALRAR--VYDDEVRKWISEVGIERIGKRLVNSKE 379
+IDF+ R ++ E +E + KRL++S+E
Sbjct: 296 PLKVNNIDFYSLSRRTPGYVASDLFSLSKEAAVEAV-KRLISSEE 339
>gi|331219784|ref|XP_003322568.1| 26S protease subunit rpt4 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|309301558|gb|EFP78149.1| 26S protease subunit rpt4 [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 393
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V + N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLAKAVANTLSTNFLKVVSSAIVDKYIGESARLIREMFAYA- 226
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 275
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P + R+ + + I + + E
Sbjct: 276 --QTKIIMATNRPDTLDPALMRPGRLDRKIEIPLPNEVARMEILKIHATPIQKQGEIDYE 333
Query: 330 DIVKLVDTFPGQSI 343
IVKL + F G +
Sbjct: 334 SIVKLAEGFNGADL 347
>gi|257387362|ref|YP_003177135.1| proteasome-activating nucleotidase [Halomicrobium mukohataei DSM
12286]
gi|257169669|gb|ACV47428.1| 26S proteasome subunit P45 family [Halomicrobium mukohataei DSM
12286]
Length = 406
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+ G G GK+ + V + I M+ EL GE A+L+R + AAD +
Sbjct: 190 LHGPPGTGKTMLAKAVANETDATFIKMAGSELVRKFIGEGARLVRDLFELAAD----REP 245
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 246 AVIFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LSEMDGFDERGEIRIIA 295
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 296 ATNRFDMLDRAILRPGRFDRLIEVP 320
>gi|66809637|ref|XP_638541.1| 26S protease regulatory subunit S10B [Dictyostelium discoideum AX4]
gi|74996881|sp|Q54PJ1.1|PRS10_DICDI RecName: Full=26S protease regulatory subunit 10B; AltName:
Full=26S proteasome AAA-ATPase subunit RPT4; AltName:
Full=Proteasome 26S subunit ATPase 6
gi|60467149|gb|EAL65185.1| 26S protease regulatory subunit S10B [Dictyostelium discoideum AX4]
Length = 393
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 88/189 (46%), Gaps = 20/189 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A++IR+ + A
Sbjct: 168 IKAPKGVLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIREMFGYAR 227
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 228 D----HQPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DT 273
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
+V II+ N L L+R GR+++ P + R+ V + I + +V E
Sbjct: 274 LSKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHAANITKHGDVDYE 333
Query: 330 DIVKLVDTF 338
I KL D F
Sbjct: 334 AIAKLADGF 342
>gi|399578914|ref|ZP_10772658.1| ATPase AAA [Halogranum salarium B-1]
gi|399235940|gb|EJN56880.1| ATPase AAA [Halogranum salarium B-1]
Length = 270
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 21/152 (13%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 214
N+ P + + G G GK+ + ++G + +SAG+++S E + + Q +REA
Sbjct: 66 NISPPNGILLHGPPGTGKTHFARAIAGELGHPYLELSAGDIKSRWINESTEKVNQLFREA 125
Query: 215 ADIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 273
A + C +FI+++DA AGR + + + Q+VN L ++ D
Sbjct: 126 AQFDR----CVIFIDEIDALLAGR--DSDLHREHAQVVNEFLAHLDD------------- 166
Query: 274 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 305
E+P +I N L R GR ++ Y
Sbjct: 167 -EDPNFLVIAATNRVDLLDEAATRRGRFDQQY 197
>gi|121702141|ref|XP_001269335.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Aspergillus clavatus NRRL 1]
gi|119397478|gb|EAW07909.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Aspergillus clavatus NRRL 1]
Length = 738
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 13/149 (8%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 214
NV+ P + + G G GK+ A++GI I +SA + SG +GE K +R+ + EA
Sbjct: 202 NVQPPRGVLLHGPPGCGKTMIANAFAAELGIPFIPISAPSIVSGMSGESEKALREHFEEA 261
Query: 215 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 274
K+ C +FI+++DA + + Q + ++V A L+ D+ ++
Sbjct: 262 ----KRIAPCLIFIDEIDAITPKR-ESAQREMEKRIV-AQLLTCMDDLA-------LDKT 308
Query: 275 ENPRVPIIVTGNDFSTLYAPLIRDGRMEK 303
+ V ++ N +L A L R GR +K
Sbjct: 309 DGKPVIVLAATNRPDSLDAALRRGGRFDK 337
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 83/200 (41%), Gaps = 19/200 (9%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+ P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 509 ITAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKFVGESERAVRQVFVRAR 568
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ C +F ++LDA R T + ++VN L +L G+ + +
Sbjct: 569 SSVP----CVIFFDELDALVPRRDDTLS-EASARVVNTLL---------TELDGLGSSRQ 614
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP-KEDIV 332
+ +I N + ++R GR+E + P+ +R + + R + ED+
Sbjct: 615 G--IFVIAATNRPDIIDPAMLRPGRLETLLFVNLPSPLERADILQTLVRKLPIEFNEDLR 672
Query: 333 KLVDTFPGQSIDFFGALRAR 352
+L + G S G+L R
Sbjct: 673 RLAEECEGFSGADLGSLLRR 692
>gi|116192555|ref|XP_001222090.1| hypothetical protein CHGG_05995 [Chaetomium globosum CBS 148.51]
gi|88181908|gb|EAQ89376.1| hypothetical protein CHGG_05995 [Chaetomium globosum CBS 148.51]
Length = 391
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P + R+ + +G+ + + E
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHAAGVSKDGEIDFE 331
Query: 330 DIVKLVDTFPGQSI 343
+VK+ D G +
Sbjct: 332 SVVKMSDGLNGADL 345
>gi|226467155|emb|CAX76058.1| Tat-binding protein 10 [Schistosoma japonicum]
Length = 398
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 70/265 (26%), Positives = 114/265 (43%), Gaps = 50/265 (18%)
Query: 130 DGLYIAPAFMDKVVVHITKNFLNLPNVKVPLI---LGI--------WGGKGQGKSFQCEL 178
D Y +DK + I K + LP VK P + LGI +G G GK+
Sbjct: 137 DSTYEMIGGLDKQIKEI-KEVIELP-VKHPELFDALGIAQPKGVLLYGPPGTGKTLLARA 194
Query: 179 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRY---REAADIIKKGKMCCLFINDLDA-G 234
V I +S EL GE A+++R+ + RE A I +F++++D+ G
Sbjct: 195 VAHHTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSI-------IFMDEVDSIG 247
Query: 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 294
+ R+ T Q L+N QL G E + +I+ N L +
Sbjct: 248 STRLESGTGGDSEVQRTMLELLN--------QLDGF---EPKQNIKVIMATNRIDILDSA 296
Query: 295 LIRDGRMEKF--YWAPTREDRIGVCSGIFRTDNVPKE-DIVKLVDTFPGQSIDFFGALRA 351
L+R GR+++ + AP E R+ + R N+ ++ D+ KL ++ PG S GA
Sbjct: 297 LLRPGRIDRKIEFPAPNEEARLDILRIHSRKMNLTRDIDLRKLAESMPGAS----GA--- 349
Query: 352 RVYDDEVRKWISEVGIERIGKRLVN 376
EV+ +E G+ + +R V+
Sbjct: 350 -----EVKGVCTEAGMYALRERRVH 369
>gi|448298419|ref|ZP_21488448.1| ATPase AAA [Natronorubrum tibetense GA33]
gi|445591615|gb|ELY45816.1| ATPase AAA [Natronorubrum tibetense GA33]
Length = 743
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 16/141 (11%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SP 556
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+F ++LDA A GG T V+ ++VN L +L G+ EE V +I
Sbjct: 557 TVIFFDELDALAPGRGGETGSNVSERVVNQLL---------TELDGL---EEMENVMVIG 604
Query: 284 TGNDFSTLYAPLIRDGRMEKF 304
N + L+R GR ++
Sbjct: 605 ATNRPDMIDPALLRSGRFDRL 625
>gi|86609273|ref|YP_478035.1| ATPase AAA [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557815|gb|ABD02772.1| ATPase, AAA family [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 513
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 27/166 (16%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
LPN K L++GI +G GKS + + + + + + AG L +G GE +RQ +
Sbjct: 256 LPNPKGVLLVGI---QGTGKSLSAKTIANEWRLPLLRLDAGRLFAGIVGESESRVRQMIQ 312
Query: 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG--- 269
A + C L+I+++D G N T D+ T+ ++ G
Sbjct: 313 LAEAMAP----CVLWIDEIDKAFG---------------NITSSADGDSGTSRRVFGSLI 353
Query: 270 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 313
+ QE+ V I+ T N+ L L+R GR ++ ++ PT +R
Sbjct: 354 TWMQEKTSPVFIVATANNVPLLPPELLRKGRFDEIFFLNLPTHAER 399
>gi|284165453|ref|YP_003403732.1| ATPase AAA [Haloterrigena turkmenica DSM 5511]
gi|284015108|gb|ADB61059.1| AAA family ATPase, CDC48 subfamily [Haloterrigena turkmenica DSM
5511]
Length = 743
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + N I + +L S GE K IRQ +R+A ++
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKA----RQVSP 556
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+F ++LDA A GG T V+ ++VN L +L G+ EE V +I
Sbjct: 557 TVIFFDELDALAPGRGGETGSNVSERVVNQLL---------TELDGL---EEMENVMVIG 604
Query: 284 TGNDFSTLYAPLIRDGRMEKF 304
N + L+R GR ++
Sbjct: 605 ATNRPDMIDPALLRSGRFDRL 625
>gi|399217513|emb|CCF74400.1| unnamed protein product [Babesia microti strain RI]
Length = 419
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 98/225 (43%), Gaps = 36/225 (16%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V + I + EL GE A+++R+ ++ A + K
Sbjct: 200 LYGPPGTGKTLTARAVANRTDACFICVIGSELVQKYVGEGARMVRELFQMA----RSKKA 255
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C LFI+++DA G G + + + V T++ I + QL G ++ N + +++
Sbjct: 256 CILFIDEVDAIGGSRGSESAH--GDHEVQRTMLEIVN-----QLDG-FDARGN--IKVLM 305
Query: 284 TGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCSGIFRT----DNVPKEDIVKLVDT 337
N TL L+R GR+++ + P E RI + RT N+ E + +L
Sbjct: 306 ATNRPDTLDPALLRPGRIDRKVEFGLPDLEGRIHIFKIHARTMSMDKNIRYEMLARLCPN 365
Query: 338 FPGQSIDFFG------ALRARVYDDEVRKWISE----VGIERIGK 372
G + A+RAR RK ISE IER+ K
Sbjct: 366 STGADLRSVCTEAGMFAIRAR------RKSISERDLIEAIERVIK 404
>gi|337283587|ref|YP_004623061.1| cell division protein CDC48 [Pyrococcus yayanosii CH1]
gi|334899521|gb|AEH23789.1| cell division protein CDC48 [Pyrococcus yayanosii CH1]
Length = 796
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 21/166 (12%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 556 LYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKA----RQAAP 611
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A R GT V ++++N L ++ G+ EN V +I
Sbjct: 612 TVIFIDEIDAIAPRR-GTDVNRVTDRIINQLL---------TEMDGIV---ENSGVVVIA 658
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFR--TDNVP 327
N + L+R GR ++ P ++R + IFR T N+P
Sbjct: 659 ATNRPDIIDPALLRPGRFDRLILVPAPDERARLE--IFRVHTRNMP 702
>gi|449330096|gb|AGE96360.1| 26S proteasome regulatory subunit 10 [Encephalitozoon cuniculi]
Length = 390
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V P + ++G G GK+ +V A M +N + + + L GE +++IR+ + A
Sbjct: 165 VHAPKGVLLYGPPGTGKTLLARIVAATMDVNFLKVVSSALIEKYIGESSRMIREMFAYA- 223
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ C +F++++DA G+ + + + +++ V TLM + + QL G +E
Sbjct: 224 ---RRKAPCIIFMDEIDAIGGKR--SRESSSSDREVQRTLMELLN-----QLDGF---KE 270
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRT-DNVPKE 329
V +I+ N L L+R GR+++ P R++ + + S + + + + +
Sbjct: 271 LDSVKVIMATNRPDILDPALLRPGRLDRKIEIPLPNEQGRKEILKIHSRLMNSIEEIDYD 330
Query: 330 DIVKLVDTFPGQSI 343
+VKL F G +
Sbjct: 331 SLVKLTSGFNGADL 344
>gi|448358955|ref|ZP_21547627.1| ATPase AAA [Natrialba chahannaoensis JCM 10990]
gi|445644243|gb|ELY97260.1| ATPase AAA [Natrialba chahannaoensis JCM 10990]
Length = 742
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 16/141 (11%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SP 556
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+F ++LDA A GG T V+ ++VN L +L G+ E+ V +I
Sbjct: 557 TVIFFDELDALAPGRGGETGSNVSERVVNQLL---------TELDGLEEMED---VMVIG 604
Query: 284 TGNDFSTLYAPLIRDGRMEKF 304
N + L+R GR ++
Sbjct: 605 ATNRPDMIDPALLRSGRFDRL 625
>gi|428779319|ref|YP_007171105.1| AAA ATPase [Dactylococcopsis salina PCC 8305]
gi|428693598|gb|AFZ49748.1| AAA+ family ATPase [Dactylococcopsis salina PCC 8305]
Length = 545
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 27/173 (15%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
+P K L++GI +G GKS + + + + + + G L G GE R R
Sbjct: 280 IPTPKGLLLVGI---QGTGKSLSAKTIAHEWRVPLLRLDTGRLFGGIVGES----ESRVR 332
Query: 213 EAADIIKKGKMCCLFINDLDAGAGRM-GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 271
+ + + C L+I+++D G + G + + +Q V +L+ +
Sbjct: 333 QMIQLSEAMSPCILWIDEIDKAFGSINSGVSGDSGTSQRVFGSLIT-------------W 379
Query: 272 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 322
QE+ V I+ T N+ L A L+R GR ++ ++ PT ++R IFR
Sbjct: 380 MQEKTQPVFIVATANNVEVLPAELLRKGRFDETFFINLPTEKER----KAIFR 428
>gi|313225098|emb|CBY20891.1| unnamed protein product [Oikopleura dioica]
gi|313245882|emb|CBY34867.1| unnamed protein product [Oikopleura dioica]
Length = 749
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 108/265 (40%), Gaps = 41/265 (15%)
Query: 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 216
++P + + G G GK+ + V + S+ E AG+ AK IR+ +
Sbjct: 332 RMPKGVLLTGPPGTGKTMLAKAVANDCNVPFYYKSSSEFVQSLAGKGAKDIREMF----S 387
Query: 217 IIKKGKMCCLFINDLDA-----GAGRMGGTTQY--TVNNQMVNATLMNIADNPTNVQLPG 269
I +K + C +FI++LDA G GG + T+N +V M +DN T
Sbjct: 388 IARKNQPCIVFIDELDAIGKAQGMSAGGGAAEKDNTLNQLLVEMDGMTGSDNDT------ 441
Query: 270 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK-----FYWAPTREDRIGVCSGIFRTD 324
+ ++ N+ ++L L+R GR ++ R D V +T+
Sbjct: 442 ---------IVLMAATNNPTSLDEALVRPGRFDRKIQCDLPATDGRRDIFMVHLKTIKTE 492
Query: 325 NVPK---EDIVKLVDTFPGQSI----DFFGALRARVYDDEVRKWISEVGIERIGKRLVNS 377
PK E + KL F G I + L AR D ++ E I+RI + +
Sbjct: 493 KPPKVYAEMLAKLTPGFSGAQIANVVNEAALLAAREQSDLIKSSHFEAAIDRI---MSGT 549
Query: 378 KEGPPTFEQPKMTLDKLLEYGRMLV 402
++ T + T+ LE G+ +V
Sbjct: 550 RKDNNTMKAETKTILAALEAGKCVV 574
>gi|428305577|ref|YP_007142402.1| AAA ATPase [Crinalium epipsammum PCC 9333]
gi|428247112|gb|AFZ12892.1| AAA ATPase central domain protein [Crinalium epipsammum PCC 9333]
Length = 544
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 23/164 (14%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
+PN K L++GI +G GKS + + ++ + + + +G L G GE +RQ +
Sbjct: 279 IPNPKGVLLVGI---QGTGKSLSAKTIASEWRLPLLRLDSGRLFGGIVGESESRVRQMIQ 335
Query: 213 EAADIIKKGKMCCLFINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 271
A + C L+I+++D G + G + ++ V +L+ +
Sbjct: 336 LAEAMAP----CVLWIDEIDKAFGNISSGVDGDSGTSRRVFGSLIT-------------W 378
Query: 272 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 313
QE+ V I+ T N+ L A L+R GR ++ ++ PT +R
Sbjct: 379 MQEKTSPVFIVATANNVQILPAELLRKGRFDEIFFLNLPTEIER 422
>gi|126659176|ref|ZP_01730315.1| ATPase, AAA family protein [Cyanothece sp. CCY0110]
gi|126619583|gb|EAZ90313.1| ATPase, AAA family protein [Cyanothece sp. CCY0110]
Length = 530
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 23/164 (14%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
+PN K L+ GI +G GKS + + + + + + G L G GE +RQ +
Sbjct: 270 IPNPKGVLLAGI---QGTGKSLSAKTIAHEWRLPLLRLDTGRLFGGIVGESESRVRQMIQ 326
Query: 213 EAADIIKKGKMCCLFINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 271
A I C L+I+++D G + G + ++ V +L+ +
Sbjct: 327 IAEAIAP----CVLWIDEIDKAFGNISSGVDGDSGTSRRVFGSLIT-------------W 369
Query: 272 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 313
QE+ V I+ T N+ L A L+R GR ++ ++ PT ++R
Sbjct: 370 MQEKTSPVFIVATANNVKILPAELLRKGRFDEIFFLNLPTAKER 413
>gi|336477419|ref|YP_004616560.1| 26S proteasome subunit P45 family protein [Methanosalsum zhilinae
DSM 4017]
gi|335930800|gb|AEH61341.1| 26S proteasome subunit P45 family [Methanosalsum zhilinae DSM 4017]
Length = 410
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + + ++ I MS +L GE A+L+R ++ A D
Sbjct: 194 LYGAPGTGKTLIAKAIASQANATFIRMSGSDLVQKFVGEGARLVRDVFQMARD----KSP 249
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
LFI+++DA G T T + VN T++ + L M + V II
Sbjct: 250 SILFIDEIDAVGGMR--THDGTTGSAEVNRTMLQL--------LAEMDGFDPTGDVKIIA 299
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCS-GIFRTDNVPKEDIVKLVDT 337
N L L+R GR ++ P R D + + + + D+V + + KL D
Sbjct: 300 ATNRIDLLDPALLRPGRFDRIIEVPLPDESGRSDILKIHTRHMSLGDDVDFDRLAKLTDG 359
Query: 338 FPGQSI 343
F G +
Sbjct: 360 FSGADL 365
>gi|307109493|gb|EFN57731.1| hypothetical protein CHLNCDRAFT_56078 [Chlorella variabilis]
Length = 399
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 92/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + + N + + A + GE A++IR+ + A
Sbjct: 167 IKPPTGVLLYGPPGTGKTLLAKAIASNIEANFLKVVASGVVDKYIGESARVIREMFGYA- 225
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ + C +F++++DA G+ ++ T ++ V TLM + QL G E+
Sbjct: 226 ---REHQPCIIFMDEIDAIGGKR--FSEGTSADREVQRTLMELLS-----QLDGF---EK 272
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+V ++ N L L+R GR+++ P + R+ + S I + ++ E
Sbjct: 273 LGKVKLVAATNRPDVLDPALMRPGRLDRKIEIPLPNEQARMEILKIHASKITKHGDIDYE 332
Query: 330 DIVKLVDTFPGQSI 343
+VKL D F G +
Sbjct: 333 AVVKLGDNFNGADL 346
>gi|77993700|gb|ABB13463.1| 26S proteasome subunit RPT6, partial [Schistosoma mansoni]
Length = 382
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 25/186 (13%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY---REAADIIKK 220
++G G GK+ V I +S EL GE A+++R+ + RE A I
Sbjct: 164 LYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSI-- 221
Query: 221 GKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 279
+F++++D+ G+ R+ T Q L+N QL G E +
Sbjct: 222 -----IFMDEVDSIGSTRLESGTGGDSEVQRTMLELLN--------QLDGF---EPKQNI 265
Query: 280 PIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCSGIFRTDNVPKE-DIVKLVD 336
+I+ N L + L+R GR+++ + AP E R+ + R N+ ++ D+ KL +
Sbjct: 266 KVIMATNRIDILDSALLRPGRIDRKIEFPAPNEEARLDILKIHSRKMNLTRDIDLRKLAE 325
Query: 337 TFPGQS 342
+ PG S
Sbjct: 326 SMPGAS 331
>gi|427738561|ref|YP_007058105.1| AAA ATPase [Rivularia sp. PCC 7116]
gi|427373602|gb|AFY57558.1| AAA+ family ATPase [Rivularia sp. PCC 7116]
Length = 540
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 87/201 (43%), Gaps = 29/201 (14%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
+PN K L++GI +G GKS + + + + + + G L G GE R R
Sbjct: 276 IPNPKGALLVGI---QGTGKSLSAKTIAHEWRLPLLRLDTGRLFGGIVGES----ESRVR 328
Query: 213 EAADIIKKGKMCCLFINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 271
+ + + C L+++++D G + G + ++ V +L+ +
Sbjct: 329 QMIQLTEAMAPCVLWMDEIDKAFGNISSGVDGDSGTSRRVFGSLIT-------------W 375
Query: 272 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT---REDRIGVCSGIFRTDNV 326
QE+ V I+ T N+ L A L+R GR ++ ++ PT R+D + V R + V
Sbjct: 376 MQEKTSPVFIVATANNVQILPAELLRKGRFDEIFFLNLPTEAERQDILKVHIQKLRPNRV 435
Query: 327 PKEDIVKL---VDTFPGQSID 344
D+ L + F G I+
Sbjct: 436 RDFDLTLLASRTENFSGAEIE 456
>gi|148688744|gb|EDL20691.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6, isoform
CRA_a [Mus musculus]
Length = 212
Score = 46.6 bits (109), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 20/179 (11%)
Query: 171 GKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 230
GK+ V +++ N + + + + GE A+LIR+ + A D + C +F+++
Sbjct: 3 GKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQPCIIFMDE 58
Query: 231 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 290
+DA GR ++ T ++ + TLM + + Q+ G + RV +I+ N T
Sbjct: 59 IDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DTLHRVKMIMATNRPDT 108
Query: 291 LYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDTFPGQSI 343
L L+R GR+++ P + R+ + I + + E IVKL D F G +
Sbjct: 109 LDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADL 167
>gi|300175375|emb|CBK20686.2| unnamed protein product [Blastocystis hominis]
Length = 422
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 63/260 (24%), Positives = 116/260 (44%), Gaps = 48/260 (18%)
Query: 78 DISDDQQDITRGKGMVDTLFQAP-------MESGTHYAVMSSYDYISQGLRQYSLDNTLD 130
+I DD I KG+++ L +E G V S+ ++ G+ Q + ++++D
Sbjct: 96 EIVDDDHVIISIKGILEYLVGVASFVDRDLLEPGVSVFVTSTSMFVV-GIVQENTNSSVD 154
Query: 131 GLYI--APAF-------MDKVVVHITKNFLNLP----------NVKVPLILGIWGGKGQG 171
+ + APA +D+ ++ I K + LP VK P + ++G G G
Sbjct: 155 VMRVEKAPAETYADIGGLDEQILEI-KESVELPLTHPELYDEIGVKPPKGVILYGEPGTG 213
Query: 172 KSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDL 231
K+ + V K + + EL AGE KL+R +R A D+ +FI+++
Sbjct: 214 KTLLAKAVANKTSATFLRLVGSELVQKYAGEGPKLVRDIFRTARDMAP----SIVFIDEI 269
Query: 232 DAGAGRMGGTTQYTVNN---QMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 288
D+ GT +Y ++ + V T++ + + QL G ++ + V +I+ N
Sbjct: 270 DS-----IGTKRYDADSSGAREVQRTMLELLN-----QLDGFDDRGD---VKVIMATNRI 316
Query: 289 STLYAPLIRDGRMEKFYWAP 308
TL L+R GR+++ P
Sbjct: 317 ETLDPALLRPGRIDRKIKLP 336
>gi|396457806|ref|XP_003833516.1| similar to 26S protease regulatory subunit S10b [Leptosphaeria
maculans JN3]
gi|312210064|emb|CBX90151.1| similar to 26S protease regulatory subunit S10b [Leptosphaeria
maculans JN3]
Length = 393
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRTD-NVPKE 329
+ II+ N TL L+R GR+++ P R + + + S TD + E
Sbjct: 276 --QTKIIMATNRPDTLDPALLRAGRLDRKLEIPLPNEVGRLEILKIHSASVVTDGEIDFE 333
Query: 330 DIVKLVDTFPGQSI 343
IVK+ D G +
Sbjct: 334 SIVKMSDGMNGADL 347
>gi|302414582|ref|XP_003005123.1| 26S protease regulatory subunit S10B [Verticillium albo-atrum
VaMs.102]
gi|261356192|gb|EEY18620.1| 26S protease regulatory subunit S10B [Verticillium albo-atrum
VaMs.102]
Length = 361
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKIVSSAIVDKYIGESARLIREMFGYA- 224
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P + R+ + +G+ + E
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHAAGVITDGEIDFE 331
Query: 330 DIVKLVDTFPGQSI 343
+VK+ D G +
Sbjct: 332 SVVKMSDGLNGADL 345
>gi|14520611|ref|NP_126086.1| cell division protein CDC48 [Pyrococcus abyssi GE5]
gi|5457827|emb|CAB49317.1| Cdc48 cell division control protein 48, AAA family [Pyrococcus
abyssi GE5]
gi|380741139|tpe|CCE69773.1| TPA: cell division protein CDC48 [Pyrococcus abyssi GE5]
Length = 795
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 17/150 (11%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 555 LYGPPGTGKTLLAKAVATESQANFIAVRGPEILSKWVGESEKNIREIFRKA----RQAAP 610
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A R GT V ++++N L M +EN V +I
Sbjct: 611 TVIFIDEIDAIAPRR-GTDVNRVTDRIINQLLTE------------MDGIQENAGVVVIA 657
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTREDR 313
N L L+R GR ++ P +++
Sbjct: 658 ATNRPDILDPALLRPGRFDRLILVPAPDEK 687
>gi|158337877|ref|YP_001519053.1| hypothetical protein AM1_4763 [Acaryochloris marina MBIC11017]
gi|158308118|gb|ABW29735.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
Length = 507
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 86/201 (42%), Gaps = 30/201 (14%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
LP+ + L++GI +G GKS + + + + + G L +G GE R R
Sbjct: 256 LPHPRGLLLVGI---QGTGKSLTAKAIAHHWHLPLLRLDVGRLFAGLVGESES----RTR 308
Query: 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 272
+ + + C L+I+++D + G +++ + +A
Sbjct: 309 QMIQLSEALAPCILWIDEIDKAFAGIDGRGDSGTTSRVFGTFITWLA------------- 355
Query: 273 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS---GIFRTDNVP 327
E+ V ++ T N+ +L ++R GR ++ ++ PT+E+R + S R N+
Sbjct: 356 -EKTSPVFVVATANNIQSLPPEMLRKGRFDEIFFVGLPTKEEREAIFSVHLSRLRPHNLN 414
Query: 328 KEDIVKLVDTFPGQSIDFFGA 348
+ D+ +L P DF GA
Sbjct: 415 QYDLQRLAYETP----DFSGA 431
>gi|255727749|ref|XP_002548800.1| protein AFG2 [Candida tropicalis MYA-3404]
gi|240133116|gb|EER32672.1| protein AFG2 [Candida tropicalis MYA-3404]
Length = 770
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 91/200 (45%), Gaps = 21/200 (10%)
Query: 147 TKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKL 206
+++F NL V P + ++G G K+ + + + G+N + + E+ + GE +
Sbjct: 528 SQSFANL-GVSSPKGVLLYGPPGCSKTLTAKALATESGLNFLAVKGPEIFNKYVGESERT 586
Query: 207 IRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQ 266
IR+ +R+A + +F +++DA AG G + T + ++ +L+N D
Sbjct: 587 IREIFRKA----RAASPSIIFFDEIDAIAGDRDGDSSTTAASNVL-TSLLNEID------ 635
Query: 267 LPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTD 324
EE V I+ N + + L+R GR+++ + P E R+ + R
Sbjct: 636 -----GVEELKGVVIVGATNKPTEIDPALLRPGRLDRHIYVAPPDYEARLQILQKCTRNF 690
Query: 325 NVPKEDI--VKLVDTFPGQS 342
N+ K+++ KL D G S
Sbjct: 691 NLDKDEVALTKLADLTEGCS 710
>gi|238488034|ref|XP_002375255.1| proteasome regulatory particle subunit Rpt4, putative [Aspergillus
flavus NRRL3357]
gi|220700134|gb|EED56473.1| proteasome regulatory particle subunit Rpt4, putative [Aspergillus
flavus NRRL3357]
Length = 413
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + M N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSMETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRTD-NVPKE 329
+ II+ N TL L+R GR+++ P R + + + S + + ++ E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHSSTVQLEGDIDFE 333
Query: 330 DIVKLVDTFPGQSI 343
+VK+ D G +
Sbjct: 334 SVVKMSDGLNGADL 347
>gi|340546049|gb|AEK51823.1| proteasome 26S ATPase subunit 6 [Alligator mississippiensis]
gi|402697414|gb|AFQ90895.1| proteasome 26S subunit ATPase 6, partial [Chrysemys picta]
gi|402697420|gb|AFQ90898.1| proteasome 26S subunit ATPase 6, partial [Testudo hermanni]
Length = 217
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 69/140 (49%), Gaps = 14/140 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 76 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 131
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 132 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 181
Query: 284 TGNDFSTLYAPLIRDGRMEK 303
N TL L+R GR+++
Sbjct: 182 ATNRPDTLDPALLRPGRLDR 201
>gi|300710268|ref|YP_003736082.1| AAA family ATPase [Halalkalicoccus jeotgali B3]
gi|448294593|ref|ZP_21484672.1| AAA family ATPase [Halalkalicoccus jeotgali B3]
gi|299123951|gb|ADJ14290.1| AAA family ATPase, CDC48 subfamily protein [Halalkalicoccus
jeotgali B3]
gi|445586270|gb|ELY40552.1| AAA family ATPase [Halalkalicoccus jeotgali B3]
Length = 741
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 67/297 (22%), Positives = 113/297 (38%), Gaps = 74/297 (24%)
Query: 87 TRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ-----GLRQYSLDNTLDGLYIAPAFMDK 141
TRG + D + + + TH V + + +++ LR+Y + LD + P +D+
Sbjct: 370 TRGMPLSDDVSLSELADDTHGFVGADIESLTKEAAMRALRRYLPEINLDEEEVPPELIDR 429
Query: 142 VVVH---------------ITKNFLNLP-------------------NVKVPLI------ 161
++V + + + LP +V+ PL
Sbjct: 430 MIVKRGDFRGALGEVEPSAMREVLVELPKISWNDVGGLEDAIGDIKESVEWPLTNPERFD 489
Query: 162 -LGI--------WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
LGI +G G GK+ + V + N I + +L S GE K IRQ +R
Sbjct: 490 RLGIDPPAGVLLYGPPGTGKTLMAKAVANETNANFISIRGPQLLSKWVGESEKAIRQTFR 549
Query: 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 272
+A + +F ++LD+ A GG V+ ++VN L +L G+
Sbjct: 550 KARQV----SPTVIFFDELDSLAPARGGEVGSNVSERVVNQLL---------TELDGL-- 594
Query: 273 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP 327
EE V +I N + LIR GR ++ P E R + T ++P
Sbjct: 595 -EEMENVMVIAATNRPDMIDPALIRSGRFDRLVMVGQPGEEGRKEILE--IHTQDIP 648
>gi|82540809|ref|XP_724694.1| ATP-dependent metalloprotease FtsH [Plasmodium yoelii yoelii 17XNL]
gi|23479426|gb|EAA16259.1| ATP-dependent metalloprotease FtsH, putative [Plasmodium yoelii
yoelii]
Length = 703
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 17/152 (11%)
Query: 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 216
K+P + + G G GK+ + + + I S E E G A+ IR+ ++ A
Sbjct: 282 KLPKGILLSGEPGTGKTLIARAIAGEANVPFIQASGSEFEEMFVGVGARRIRELFQTA-- 339
Query: 217 IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 276
KK C +FI+++DA G+ + +N V TL N V+L G E+N
Sbjct: 340 --KKHAPCIVFIDEIDA-----VGSKRSNRDNSAVRMTL-----NQLLVELDGF---EQN 384
Query: 277 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
+ +I N +L L+R GR++K P
Sbjct: 385 EGIVVICATNFPQSLDKALVRPGRLDKTIVVP 416
>gi|410084383|ref|XP_003959768.1| hypothetical protein KAFR_0L00260 [Kazachstania africana CBS 2517]
gi|372466361|emb|CCF60633.1| hypothetical protein KAFR_0L00260 [Kazachstania africana CBS 2517]
Length = 794
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 23/183 (12%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+ P + +WG G GK+ + V + N I + EL + GE + IRQ + A
Sbjct: 523 INAPAGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFARAR 582
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
I C +F ++LDA R T+ ++++VN L +L G+
Sbjct: 583 ASIP----CIIFFDELDALVPRR-DTSLSESSSRVVNTLL---------TELDGL----- 623
Query: 276 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKEDI 331
N R I V G N + ++R GR++K F P E+++ + + R++ P +
Sbjct: 624 NDRRGIFVVGATNRPDMIDPAMLRPGRLDKTLFIELPNAEEKLDIFKTLIRSNGTPIAND 683
Query: 332 VKL 334
V L
Sbjct: 684 VDL 686
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 16/142 (11%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+ G G GK+ + ++ + I +SA + SG +GE K +R ++EA I
Sbjct: 222 LHGPPGCGKTTIANALAGELNVPFINISAPSIVSGMSGESEKKLRDVFQEAKSIAP---- 277
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F +++DA + G Q + ++V A L+ D T G P+IV
Sbjct: 278 CLIFFDEIDAITPKRDGGAQREMEKRIV-AQLLTSMDELTMEHTDGK---------PVIV 327
Query: 284 TG--NDFSTLYAPLIRDGRMEK 303
G N L + L R GR ++
Sbjct: 328 IGATNRPDALDSALRRAGRFDR 349
>gi|295672730|ref|XP_002796911.1| 26S protease regulatory subunit [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226282283|gb|EEH37849.1| 26S protease regulatory subunit [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 354
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P + R+ + SG+ + E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHASGVAIEGEIDFE 333
Query: 330 DIVKLVDTFPGQSI 343
IVK+ D G +
Sbjct: 334 SIVKMSDGLNGADL 347
>gi|289579864|ref|YP_003478330.1| ATPase AAA [Natrialba magadii ATCC 43099]
gi|448281105|ref|ZP_21472413.1| ATPase AAA [Natrialba magadii ATCC 43099]
gi|289529417|gb|ADD03768.1| AAA family ATPase, CDC48 subfamily [Natrialba magadii ATCC 43099]
gi|445579429|gb|ELY33823.1| ATPase AAA [Natrialba magadii ATCC 43099]
Length = 742
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 16/141 (11%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SP 556
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+F ++LDA A GG T V+ ++VN L +L G+ E+ V +I
Sbjct: 557 TVIFFDELDALAPGRGGETGSNVSERVVNQLL---------TELDGLEEMED---VMVIG 604
Query: 284 TGNDFSTLYAPLIRDGRMEKF 304
N + L+R GR ++
Sbjct: 605 ATNRPDMIDPALLRSGRFDRL 625
>gi|359462169|ref|ZP_09250732.1| hypothetical protein ACCM5_25806 [Acaryochloris sp. CCMEE 5410]
Length = 507
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 86/201 (42%), Gaps = 30/201 (14%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
LP+ + L++GI +G GKS + + + + + G L +G GE R R
Sbjct: 256 LPHPRGLLLVGI---QGTGKSLTAKAIAHHWHLPLLRLDVGRLFAGLVGESES----RTR 308
Query: 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 272
+ + + C L+I+++D + G +++ + +A
Sbjct: 309 QMIQLSEALAPCILWIDEIDKAFAGIDGRGDSGTTSRVFGTFITWLA------------- 355
Query: 273 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS---GIFRTDNVP 327
E+ V ++ T N+ +L ++R GR ++ ++ PT+E+R + S R N+
Sbjct: 356 -EKTSPVFVVATANNIQSLPPEMLRKGRFDEIFFVGLPTKEEREAIFSVHLSRLRPHNLN 414
Query: 328 KEDIVKLVDTFPGQSIDFFGA 348
+ D+ +L P DF GA
Sbjct: 415 QYDLQRLAYETP----DFSGA 431
>gi|452206535|ref|YP_007486657.1| proteasome-activating nucleotidase [Natronomonas moolapensis
8.8.11]
gi|452082635|emb|CCQ35898.1| proteasome-activating nucleotidase [Natronomonas moolapensis
8.8.11]
Length = 404
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+ G G GK+ + V + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 187 LHGPPGTGKTMLAKAVANQTDATFIKMAGSELVHKFIGEGAKLVRDLF----ELARQQEP 242
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M E+ ++ II
Sbjct: 243 AVVFIDEIDAIAAKR--TESKTSGDAEVQRTMMQL--------LAEMDGFEDRGQISIIA 292
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 293 ATNRFDMLDRAILRPGRFDRLIEVP 317
>gi|448352560|ref|ZP_21541343.1| ATPase AAA [Natrialba hulunbeirensis JCM 10989]
gi|445642622|gb|ELY95689.1| ATPase AAA [Natrialba hulunbeirensis JCM 10989]
Length = 742
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 16/141 (11%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + N I + +L S GE K IRQ +R+A +
Sbjct: 501 LYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKARQV----SP 556
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+F ++LDA A GG T V+ ++VN L +L G+ E+ V +I
Sbjct: 557 TVIFFDELDALAPGRGGETGSNVSERVVNQLL---------TELDGLEEMED---VMVIG 604
Query: 284 TGNDFSTLYAPLIRDGRMEKF 304
N + L+R GR ++
Sbjct: 605 ATNRPDMIDPALLRSGRFDRL 625
>gi|301122253|ref|XP_002908853.1| 26S protease regulatory subunit S10B [Phytophthora infestans T30-4]
gi|262099615|gb|EEY57667.1| 26S protease regulatory subunit S10B [Phytophthora infestans T30-4]
Length = 394
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 91/193 (47%), Gaps = 24/193 (12%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + + A + GE A++IR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARALACNINATFLKVVASAIVDKYIGESARVIREMFGYAR 228
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGT--TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 273
D + C +F++++DA +GG+ ++ T ++ + TLM + + QL G
Sbjct: 229 D----HQPCVIFMDEIDA----IGGSRYSEGTSADREIQRTLMELLN-----QLDGF--- 272
Query: 274 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVP 327
+ +V +++ N L L+R GR+++ P +R D + + SG I + +
Sbjct: 273 DALGQVKMVMATNRPDILDPALLRPGRLDRKIEIPLPNEASRMDILKIHSGPITKKGEID 332
Query: 328 KEDIVKLVDTFPG 340
E IVKL D F G
Sbjct: 333 YESIVKLTDGFNG 345
>gi|448410689|ref|ZP_21575394.1| cell division control protein 48/AAA family ATPase [Halosimplex
carlsbadense 2-9-1]
gi|445671725|gb|ELZ24312.1| cell division control protein 48/AAA family ATPase [Halosimplex
carlsbadense 2-9-1]
Length = 729
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 20/155 (12%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 214
N P + + G G GK+ V + G+N I ++ EL GE K +R+ +
Sbjct: 504 NTDPPSGVLLHGPPGTGKTLLARAVAGESGVNFIRVAGPELMDRYVGESEKAVREVF--- 560
Query: 215 ADIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 273
D ++ +F +++D GRM G V ++V+ L M +
Sbjct: 561 -DRARQTAPAIVFFDEIDGIAGGRMDGN---EVTERVVSQLLTE------------MDSA 604
Query: 274 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
ENP V +I N L L+R GR+E+ P
Sbjct: 605 AENPNVVVIAATNRRDMLDDALLRPGRLEQHVEVP 639
>gi|146302995|ref|YP_001190311.1| AAA ATPase [Metallosphaera sedula DSM 5348]
gi|145701245|gb|ABP94387.1| AAA family ATPase, CDC48 subfamily [Metallosphaera sedula DSM 5348]
Length = 768
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 16/160 (10%)
Query: 149 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 208
++ V+ P + ++G G GK+ + V + G N I + E+ S GE + IR
Sbjct: 488 DYYETAGVEPPKGILLFGPPGTGKTMLAKAVATESGANFIAVRGPEVLSKWVGESERAIR 547
Query: 209 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 268
+ +R+A + +F +++DA A G ++ V ++VN L ++
Sbjct: 548 EIFRKA----RMYAPSVIFFDEIDAIAPMRGISSDSGVTERLVNQLL---------AEMD 594
Query: 269 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
G+ N + V I+ N L L+R GR EK + P
Sbjct: 595 GIENLDN---VVIVAATNRPDILDPALLRPGRFEKLMYVP 631
>gi|219669145|ref|YP_002459580.1| microtubule-severing ATPase [Desulfitobacterium hafniense DCB-2]
gi|219539405|gb|ACL21144.1| Microtubule-severing ATPase [Desulfitobacterium hafniense DCB-2]
Length = 493
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 73/165 (44%), Gaps = 16/165 (9%)
Query: 188 IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK--MCCLFINDLDAGAGRMGGTTQYT 245
+ +S E AG A+ +R+ +++A + KK K +FI+++D + G +
Sbjct: 127 LAISGSEFVEMYAGVGAERVRKLFKKARESAKKEKKDRAIIFIDEMDILGAKRGSNVSHH 186
Query: 246 VNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFY 305
+Q +N L V++ G+ N E+ ++ +I N L L+R GR ++
Sbjct: 187 EYDQTLNQLL---------VEMDGLGNSEQGTQILLIAATNRAEALDPALLRPGRFDRLV 237
Query: 306 WA--PTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGA 348
P +E R+ + T N P V L + ++ +F GA
Sbjct: 238 KVDLPDKEGRLAILK--IHTKNKPLASCVDL-EQIAQETYNFSGA 279
>gi|452980453|gb|EME80214.1| hypothetical protein MYCFIDRAFT_156006 [Pseudocercospora fijiensis
CIRAD86]
Length = 391
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 224
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 225 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 273
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P + R+ V S + + + E
Sbjct: 274 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEAGRLEVLKIHASSVQKEGEIDFE 331
Query: 330 DIVKLVDTFPGQSI 343
+VK+ D G +
Sbjct: 332 SVVKMSDGLNGADL 345
>gi|432330935|ref|YP_007249078.1| 26S proteasome subunit P45 family [Methanoregula formicicum SMSP]
gi|432137644|gb|AGB02571.1| 26S proteasome subunit P45 family [Methanoregula formicicum SMSP]
Length = 436
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 16/146 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+ G G GK+ + V + + + + EL GE A+L+R+ + D+ KK
Sbjct: 217 LHGPPGTGKTLLAKAVAHETNAHFMRVVGSELVQKYIGEGARLVRELF----DLAKKKAP 272
Query: 224 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282
+FI+++DA GA R T T ++ V TLM + L GM E V II
Sbjct: 273 TIIFIDEIDAVGASR---TEANTSGDREVQRTLMQL--------LAGMDGFENRGDVKII 321
Query: 283 VTGNDFSTLYAPLIRDGRMEKFYWAP 308
N L L+R GR ++ P
Sbjct: 322 GATNRIDILDKALLRPGRFDRIIEIP 347
>gi|296410824|ref|XP_002835135.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295627910|emb|CAZ79256.1| unnamed protein product [Tuber melanosporum]
Length = 386
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 87/194 (44%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 161 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 219
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 220 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 268
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P + R+ + + + + + E
Sbjct: 269 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHAASVSKEGEIDYE 326
Query: 330 DIVKLVDTFPGQSI 343
IVK+ D G +
Sbjct: 327 SIVKMSDQLNGADL 340
>gi|159472777|ref|XP_001694521.1| predicted protein [Chlamydomonas reinhardtii]
gi|158276745|gb|EDP02516.1| predicted protein [Chlamydomonas reinhardtii]
Length = 580
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 62/145 (42%), Gaps = 17/145 (11%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + G N I + EL + GE + +RQ + A +
Sbjct: 352 LYGPPGCGKTLVAKAVANESGANFISIKGPELLNKYVGESERAVRQLFARA----RAAHP 407
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C LF ++LDA A R G T NNQ A+ N L M + + I+
Sbjct: 408 CVLFFDELDALAPRRG-----TDNNQA--------AERVVNQLLTEMDGVDSRQGLFIVA 454
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N + L+R GR+EK + P
Sbjct: 455 ATNRPDMIDPALLRPGRLEKVLYVP 479
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 12/90 (13%)
Query: 152 NLPNVKVPLILGI--------WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 203
+LP+V+V LG+ G G GK+ + + G+ + +SA E+ SG +GE
Sbjct: 1 HLPHVQVYAWLGVEPPRGVLLHGPPGCGKTALANAIANECGVPFLRVSAPEIVSGMSGES 60
Query: 204 AKLIRQRYREAADIIKKGKMCCLFINDLDA 233
+RQ + EA ++ C +FI+++DA
Sbjct: 61 EAKLRQLFNEARELAP----CIVFIDEIDA 86
>gi|383318695|ref|YP_005379536.1| proteasome-activating nucleotidase [Methanocella conradii HZ254]
gi|379320065|gb|AFC99017.1| Proteasome-activating nucleotidase [Methanocella conradii HZ254]
Length = 410
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 64/153 (41%), Gaps = 14/153 (9%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
++ P + ++G G GK+ + V I MS EL GE A+L+R ++ A
Sbjct: 184 IEAPRGVLLYGPPGTGKTLLAKAVAHASKATFIRMSGSELVHKFIGEGAQLVRDLFQMAR 243
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D +FI++LDA GR T T + VN T+M + L M E
Sbjct: 244 D----KAPSIIFIDELDAVGGRR--THDGTTGSAEVNRTMMQL--------LSEMDGFSE 289
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
V I+ N L ++R GR ++ P
Sbjct: 290 RGNVRIMAATNRIDMLDPAILRPGRFDRIIEIP 322
>gi|443709650|gb|ELU04242.1| hypothetical protein CAPTEDRAFT_149757 [Capitella teleta]
Length = 393
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 84/186 (45%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 176 LYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFGYARD----HQP 231
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + G +V +I+
Sbjct: 232 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDALG--------KVKMIM 281
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E +VKL D
Sbjct: 282 ATNRPDTLDPALLRPGRLDRKIEISLPNEQARMEIMKIHAGPIAKHGEIDWEAVVKLSDD 341
Query: 338 FPGQSI 343
F G +
Sbjct: 342 FNGADL 347
>gi|403341369|gb|EJY69989.1| ATPase, AAA family protein [Oxytricha trifallax]
Length = 648
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 91/224 (40%), Gaps = 26/224 (11%)
Query: 151 LNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 210
L N+K P + ++G G K+ + + + G+N I + EL S G+ K IR+
Sbjct: 403 FQLMNLKPPAGILLYGPPGCSKTMIAKALATESGLNFIAIKGPELFSKYVGDTEKAIREI 462
Query: 211 YREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM 270
+R+A + +F +++DA A + G +++D L M
Sbjct: 463 FRKA----RLSSPSIIFFDEIDAMATQRGNDE-------------TSVSDRALCQLLNEM 505
Query: 271 YNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTD 324
E +V ++ N + L+R GR ++ + P RE + + G + ++D
Sbjct: 506 DGVESRAQVIVVAATNRLDIIDTALLRPGRFDRLIYVPLPSQQAREQILRINVGKMQKSD 565
Query: 325 NVPKEDIVKLVDTFPGQSIDFF---GALRARVYDDEVRKWISEV 365
++ E + + D G I L+A D + K E+
Sbjct: 566 DIDYEKLARETDGMSGAEIALICREAGLKALTQDMNIEKEDGEL 609
>gi|367006109|ref|XP_003687786.1| hypothetical protein TPHA_0K02220 [Tetrapisispora phaffii CBS 4417]
gi|357526091|emb|CCE65352.1| hypothetical protein TPHA_0K02220 [Tetrapisispora phaffii CBS 4417]
Length = 820
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 81/183 (44%), Gaps = 23/183 (12%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+ P + +WG G GK+ + V + N I + EL + GE + IRQ + A
Sbjct: 554 ISAPAGVLLWGPPGCGKTLLAKAVANESRANFISIKGPELLNKYVGESERAIRQVFTRA- 612
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ C +F ++LDA R + + ++++VN L +L G+
Sbjct: 613 ---RASVPCVIFFDELDALVPRRDASLSES-SSRVVNTLL---------TELDGL----- 654
Query: 276 NPRVPIIVTG--NDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKEDI 331
N R I V G N + ++R GR++K F P ++++ + + I + + P +D
Sbjct: 655 NDRNGIFVIGATNRPDMIDPAMLRPGRLDKTLFIELPNFQEKLDIINTITKVNGTPLDDS 714
Query: 332 VKL 334
V L
Sbjct: 715 VNL 717
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 89/204 (43%), Gaps = 24/204 (11%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V+ P + + G G GK+ + ++ + I +SA + SG +GE K IR+ + EA
Sbjct: 225 VEPPRGVLLHGPPGCGKTSIANALAGELQVPFISISAPSVVSGMSGESEKKIRELFDEAK 284
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ C +F +++DA + G Q + ++V A L+ D + E+
Sbjct: 285 SLAP----CLMFFDEIDAITPKRDGGAQREMERRIV-AQLLTAMDE---------LSMEK 330
Query: 276 NPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTDNVPKE-D 330
P+IV G N +L A L R GR ++ P R+ + + + E D
Sbjct: 331 TGGKPVIVIGATNRPDSLDAALRRAGRFDREICLNVPNEVSRLHILKKMSEHLKIKGEID 390
Query: 331 IVKLVDTFPGQSIDFFGA-LRARV 353
+KL PG F GA L+A V
Sbjct: 391 YLKLAKLTPG----FVGADLKALV 410
>gi|71028972|ref|XP_764129.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351083|gb|EAN31846.1| hypothetical protein, conserved [Theileria parva]
Length = 680
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 17/152 (11%)
Query: 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 216
K+P + + G G GK+ + ++ G+ I S E E G A+ IR ++ A
Sbjct: 240 KLPKGILLAGSPGTGKTLIARALASEAGVPFIHASGSEFEEMFVGVGARRIRDLFKTAKS 299
Query: 217 IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 276
I C +FI++LDA G+ + ++++ V TL N V+L G E
Sbjct: 300 I----SPCIVFIDELDA-----VGSRRSSMDHNSVRMTL-----NQLLVELDGFAKHEG- 344
Query: 277 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
+ ++ N +L L+R GR++K + P
Sbjct: 345 --IVVLCATNFPESLDPALVRPGRLDKTVYIP 374
>gi|301756719|ref|XP_002914210.1| PREDICTED: 26S protease regulatory subunit 10B-like [Ailuropoda
melanoleuca]
gi|281347245|gb|EFB22829.1| hypothetical protein PANDA_002073 [Ailuropoda melanoleuca]
Length = 389
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 84/186 (45%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNLLKVVSSSIVDKYIGESACLIREMFNYARD----HQP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F+++++A GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEINAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPTTKHGEIDYEAIVKLSDG 337
Query: 338 FPGQSI 343
F G +
Sbjct: 338 FNGADL 343
>gi|258577759|ref|XP_002543061.1| ATPase [Uncinocarpus reesii 1704]
gi|237903327|gb|EEP77728.1| ATPase [Uncinocarpus reesii 1704]
Length = 751
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 18/143 (12%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G K+ + + + G+N + + E+ S GE + +R+ +R+A + +
Sbjct: 524 LYGPPGCSKTLTVKALATEAGLNFLAVKGAEVLSMYVGESERALREIFRKA----RAARP 579
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+F +++DA AGR G Q VN V TL+N D EE V ++
Sbjct: 580 SIIFFDEIDAIAGRRGPGQQSGVN---VLTTLLNEMD-----------GIEELKNVLVVA 625
Query: 284 TGNDFSTLYAPLIRDGRMEKFYW 306
N TL L+R GR++ +
Sbjct: 626 ATNKPDTLDPALMRPGRLDNILY 648
>gi|218246552|ref|YP_002371923.1| ATPase AAA [Cyanothece sp. PCC 8801]
gi|257059591|ref|YP_003137479.1| AAA ATPase [Cyanothece sp. PCC 8802]
gi|218167030|gb|ACK65767.1| AAA ATPase central domain protein [Cyanothece sp. PCC 8801]
gi|256589757|gb|ACV00644.1| AAA ATPase central domain protein [Cyanothece sp. PCC 8802]
Length = 504
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 30/201 (14%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
LP+ + L++GI +G GKS + + + + + G L G GE R R
Sbjct: 256 LPHPRGLLLVGI---QGTGKSLTAKAISHHWHLPLLRLDVGRLFGGLVGES----ESRTR 308
Query: 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 272
+ + + C L+I+++D G + G +++ + +A
Sbjct: 309 QMISLAEALSPCVLWIDEIDKAFGGVDGKGDSGTTSRVFGTFITWLA------------- 355
Query: 273 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR---IGVCSGIFRTDNVP 327
E+ V ++ T N+ L ++R GR ++ ++ PT+E+R V R N+
Sbjct: 356 -EKQSPVFVVATANNIQALPPEMLRKGRFDEIFFVGLPTQEEREAIFNVHLSRLRPHNLK 414
Query: 328 KEDIVKLVDTFPGQSIDFFGA 348
DI +L P DF GA
Sbjct: 415 SYDIKRLAYETP----DFSGA 431
>gi|156087018|ref|XP_001610916.1| 26S protease regulatory subunit 7 [Babesia bovis T2Bo]
gi|154798169|gb|EDO07348.1| 26S protease regulatory subunit 7, putative [Babesia bovis]
Length = 425
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V + I + EL GE A+L+R+ ++ A + K
Sbjct: 206 LYGPPGTGKTLTARAVANRTDACFICVIGSELVQKYVGEGARLVRELFQMA----RSKKA 261
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C LFI+++DA G G + + + V T++ I + QL G ++ N + +I+
Sbjct: 262 CILFIDEVDAIGGSRGDESAH--GDHEVQRTMLEIVN-----QLDG-FDARGN--IKVIM 311
Query: 284 TGNDFSTLYAPLIRDGRMEK 303
N TL L+R GR+++
Sbjct: 312 ATNRPDTLDPALLRPGRIDR 331
>gi|83314741|ref|XP_730492.1| 26s protease regulatory subunit s10b [Plasmodium yoelii yoelii
17XNL]
gi|23490230|gb|EAA22057.1| 26s protease regulatory subunit s10b (p44) (conserved atpase domain
protein 44). [thirteen-lined ground squirrel]
[Plasmodium yoelii yoelii]
Length = 393
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + GE A++IR+ + A
Sbjct: 168 IKTPKGVLLYGPPGTGKTLLARAMASNINCNFMRIVVSSIVDKYIGESARIIREMFTYA- 226
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR +Q T ++ + TLM + ++ L G EE
Sbjct: 227 ---KEHQPCIIFMDEIDAIGGRR--FSQGTSADREIQRTLMELLNH-----LDGF---EE 273
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
V II+ N L L+R GR+++ P
Sbjct: 274 LGNVKIIMATNRPDVLDPALVRPGRLDRKIEIP 306
>gi|358342186|dbj|GAA49709.1| 26S proteasome regulatory subunit T6, partial [Clonorchis sinensis]
Length = 666
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 115/265 (43%), Gaps = 50/265 (18%)
Query: 130 DGLYIAPAFMDKVVVHITKNFLNLPNVKVPLI---LGI--------WGGKGQGKSFQCEL 178
D Y +DK + I K + LP VK P + LGI +G G GK+
Sbjct: 165 DSTYEMIGGLDKQIKEI-KEVIELP-VKHPELFEALGIAQPKGVLLYGPPGTGKTLLARA 222
Query: 179 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRY---REAADIIKKGKMCCLFINDLDA-G 234
V I +S EL GE A+++R+ + RE A I +F++++D+ G
Sbjct: 223 VAHHTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSI-------IFMDEVDSIG 275
Query: 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 294
+ R+ ++ Q L+N QL G E + +I+ N L +
Sbjct: 276 STRVESSSGGDSEVQRTMLELLN--------QLDGF---EPKQNIKVIMATNRIDILDSA 324
Query: 295 LIRDGRMEKF--YWAPTREDRIGVCSGIFRTDNVPKE-DIVKLVDTFPGQSIDFFGALRA 351
L+R GR+++ + AP E R+ + R N+ ++ D+ KL ++ PG S GA
Sbjct: 325 LLRPGRIDRKIEFPAPNEEARLDILKIHSRKMNLTRDIDLRKLAESMPGAS----GA--- 377
Query: 352 RVYDDEVRKWISEVGIERIGKRLVN 376
EV+ +E G+ + +R V+
Sbjct: 378 -----EVKGVCTEAGMYALRERRVH 397
>gi|432328549|ref|YP_007246693.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum sp. MAR08-339]
gi|432135258|gb|AGB04527.1| AAA family ATPase, CDC48 subfamily [Aciduliprofundum sp. MAR08-339]
Length = 728
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 65/155 (41%), Gaps = 16/155 (10%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 214
VK+P + ++G G GK+ + V + N I + E S GE K +R+ +R+A
Sbjct: 486 KVKIPKGILLYGPPGTGKTLLAKAVATESEANFISVKGPEFLSKWVGESEKAVREVFRKA 545
Query: 215 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 274
++ +FI+++DA A G V ++V+ L M E
Sbjct: 546 ----RQAAPAVIFIDEIDAVAPVRGMDLGTRVTERVVSQLLTE------------MDGLE 589
Query: 275 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 309
E V +I N L L+R GR ++ + P
Sbjct: 590 ELHNVTVIAATNRPDMLDPALLRPGRFDRLIYVPV 624
>gi|320164654|gb|EFW41553.1| proteasome 26S subunit [Capsaspora owczarzaki ATCC 30864]
Length = 391
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + + + + + + GE A+LIR+ + A
Sbjct: 166 IKPPKGVLLYGPPGTGKTLLARAVASNIEASFLKVVSSSIVDKYIGESARLIREMFGYAR 225
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + + G
Sbjct: 226 D----HQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDVLG------ 273
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCS-GIFRTDNVPKE 329
+V +I+ N TL L+R GR+++ P R D + + S I + + +
Sbjct: 274 --KVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARMDILKIHSAAITKHGEIDWD 331
Query: 330 DIVKLVDTFPGQSI 343
++KL D F G +
Sbjct: 332 AVIKLSDGFNGADL 345
>gi|517390|emb|CAA56097.1| cdcH [Halobacterium salinarum]
Length = 742
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 16/149 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V+ P + ++G G GK+ + V + N I + +L S GE K IRQ +R+A
Sbjct: 493 VEPPAGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKAR 552
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ +F ++LD+ A G T V+ ++VN L +L G+ EE
Sbjct: 553 QVAP----TVIFFDELDSLAPGRGQTGGNNVSERVVNQLL---------TELDGLEEMEE 599
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKF 304
V +I N + LIR GR ++
Sbjct: 600 ---VMVIAATNRPDIIDPALIRSGRFDRL 625
>gi|390357797|ref|XP_797089.3| PREDICTED: peroxisome biogenesis factor 1-like [Strongylocentrotus
purpuratus]
Length = 1533
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 88/203 (43%), Gaps = 29/203 (14%)
Query: 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 221
L ++G G GK+ +V + G+N I + EL S G + +R + A
Sbjct: 1057 LLLYGPPGTGKTLLGGVVAKECGLNFISIKGPELLSKYIGASEQSVRDLFTRAM----SA 1112
Query: 222 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 281
K C LF ++ D+ A R G + V +++VN L QL G+ E V +
Sbjct: 1113 KPCILFFDEFDSLAPRRGHDST-GVTDRVVNQLL---------TQLDGVEGLE---GVYV 1159
Query: 282 IVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRT----DNVPKEDIVKLV 335
I + + L+R GR++K F PT E+R+ + + R NV I K +
Sbjct: 1160 IGATSRPDLIDPALLRPGRLDKCLFCPIPTAEERVEILQALARKMTLRSNVDLAAIAKKL 1219
Query: 336 DTFPGQSIDFFGALRARVYDDEV 358
D F G L+A +Y+ ++
Sbjct: 1220 DHFTG------ADLKALLYNAQL 1236
>gi|1478008|gb|AAB36380.1| gibberellin A-binding protein, GABP=47 kda
ribulose-1,5-bisphosphate carboxylase/oxygenase activase
homolog [Oryza sativa=rice, leaves, Peptide, 56 aa]
Length = 56
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/21 (100%), Positives = 21/21 (100%)
Query: 196 ESGNAGEPAKLIRQRYREAAD 216
ESGNAGEPAKLIRQRYREAAD
Sbjct: 23 ESGNAGEPAKLIRQRYREAAD 43
Score = 38.5 bits (88), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/22 (77%), Positives = 18/22 (81%)
Query: 60 EYDEEKQTSQDRWAGLAYDISD 81
E DE KQT QDRW GLAYDIS+
Sbjct: 2 ELDEGKQTDQDRWKGLAYDISE 23
>gi|330466003|ref|YP_004403746.1| ATPase central domain-containing protein [Verrucosispora maris
AB-18-032]
gi|328808974|gb|AEB43146.1| ATPase central domain-containing protein [Verrucosispora maris
AB-18-032]
Length = 548
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 25/167 (14%)
Query: 152 NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY 211
LP + LI G+ G GKS + + A G+ + + G + +G G + +R
Sbjct: 273 GLPAPRGVLITGV---PGCGKSLTAKAIAAAWGLPLLRLDIGRVFAGLVGSSEQNMRTAI 329
Query: 212 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 271
R A + C L+I++++ G GGT + ++ + L +
Sbjct: 330 RTA----EASAPCVLWIDEIEKGFA--GGTGDSGTSTRVFGSFLT--------------W 369
Query: 272 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV 316
QE+ V +I T N+ L L+R GR ++ ++ PTR +R +
Sbjct: 370 MQEKKQSVFVIATANNIEALPPELLRKGRFDEIFFVDLPTRAERASI 416
>gi|302681813|ref|XP_003030588.1| hypothetical protein SCHCODRAFT_57861 [Schizophyllum commune H4-8]
gi|300104279|gb|EFI95685.1| hypothetical protein SCHCODRAFT_57861 [Schizophyllum commune H4-8]
Length = 1042
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 89/202 (44%), Gaps = 33/202 (16%)
Query: 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 221
L ++G G GK+ V + G+N I + E+ + G K +R+ + A +
Sbjct: 728 LLLYGYPGCGKTLLASAVAKECGLNFISVKGPEILNKYIGASEKSVRELFERA----QAA 783
Query: 222 KMCCLFINDLDAGAGRMG----GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 277
K C LF ++ D+ A + G G T VN + T M+ A+ L G+Y
Sbjct: 784 KPCVLFFDEFDSIAPKRGHDSTGVTDRVVNQML---TQMDGAEG-----LEGVYVLAATS 835
Query: 278 RVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNV-PKEDIVKL 334
R +I + L+R GR++K F PT E+R + S + R + P+ D+
Sbjct: 836 RPDLIDSA---------LLRPGRLDKSVFCNMPTAEERKDILSAVARKVALAPEVDLQHA 886
Query: 335 VDTFPGQSIDFFGA-LRARVYD 355
+ G F GA L+A +Y+
Sbjct: 887 AEATEG----FSGADLQALLYN 904
>gi|209882419|ref|XP_002142646.1| 26S proteasome regulatory subunit 7 [Cryptosporidium muris RN66]
gi|209558252|gb|EEA08297.1| 26S proteasome regulatory subunit 7, putative [Cryptosporidium
muris RN66]
Length = 431
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V + I + EL GE A+++R+ +R A + K
Sbjct: 212 LYGPPGTGKTLTARAVANRTDACFICVIGSELVQKYVGEGARMVRELFRLA----RSKKA 267
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C LFI+++DA G G + + + V T++ I + QL G ++ N + +++
Sbjct: 268 CILFIDEVDAIGGARGEESAH--GDHEVQRTMLEIVN-----QLDG-FDARGN--IKVLM 317
Query: 284 TGNDFSTLYAPLIRDGRMEK 303
N TL L+R GR+++
Sbjct: 318 ATNRPDTLDPALLRPGRLDR 337
>gi|422314849|ref|ZP_16396300.1| hypothetical protein FPOG_00580 [Fusobacterium periodonticum D10]
gi|404593275|gb|EKA94845.1| hypothetical protein FPOG_00580 [Fusobacterium periodonticum D10]
Length = 523
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 74/177 (41%), Gaps = 20/177 (11%)
Query: 148 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 207
K+ L ++ P + + G G GKS + + A + + ++ G+
Sbjct: 259 KDLLRSKGLRSPRGILLVGVPGCGKSLSAKAISASWKLPLYRLDFATVQGSYVGQS---- 314
Query: 208 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 267
Q+ ++A + C L+I++++ G G + V+ +MV L
Sbjct: 315 EQQLKDALTTAENVSPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF----------- 363
Query: 268 PGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 322
+ QE +V ++ T ND S L + L+R GR ++ ++ PT E+R + R
Sbjct: 364 ---WLQESKKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTAEERYDIIKMYMR 417
>gi|348676254|gb|EGZ16072.1| hypothetical protein PHYSODRAFT_354854 [Phytophthora sojae]
Length = 394
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 91/193 (47%), Gaps = 24/193 (12%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + + A + GE A++IR+ + A
Sbjct: 169 IKPPKGVLLYGPPGTGKTLLARALACNINATFLKVVASAIVDKYIGESARVIREMFGYAR 228
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGT--TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ 273
D + C +F++++DA +GG+ ++ T ++ + TLM + + QL G
Sbjct: 229 D----HQPCVIFMDEIDA----IGGSRYSEGTSADREIQRTLMELLN-----QLDGF--- 272
Query: 274 EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSG-IFRTDNVP 327
+ +V +++ N L L+R GR+++ P +R D + + SG I + +
Sbjct: 273 DALGQVKMVMATNRPDILDPALLRPGRLDRKIEIPLPNEASRMDILKIHSGPITKKGEID 332
Query: 328 KEDIVKLVDTFPG 340
E IVKL D F G
Sbjct: 333 YESIVKLTDGFNG 345
>gi|281204612|gb|EFA78807.1| 26S protease regulatory subunit S10B [Polysphondylium pallidum
PN500]
Length = 493
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 88/189 (46%), Gaps = 20/189 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A++IR+ + A
Sbjct: 167 IKPPKGVLLYGPPGTGKTLLARAIASNLDANFLKVVSSAIVDKYIGESARVIREMFGYAR 226
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 227 D----HQPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLQ- 274
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
+V II+ N L L+R GR+++ P + R+ V S I + ++ E
Sbjct: 275 --KVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHASSITKHGDIDFE 332
Query: 330 DIVKLVDTF 338
I KL D F
Sbjct: 333 AISKLADGF 341
>gi|15790615|ref|NP_280439.1| cell division cycle protein [Halobacterium sp. NRC-1]
gi|169236353|ref|YP_001689553.1| AAA-type ATPase (transitional ATPase homolog) [Halobacterium
salinarum R1]
gi|12229754|sp|Q9HPF0.1|CDCH_HALSA RecName: Full=Protein CdcH
gi|10581137|gb|AAG19919.1| cell division cycle protein [Halobacterium sp. NRC-1]
gi|167727419|emb|CAP14207.1| AAA-type ATPase (CDC48 subfamily) [Halobacterium salinarum R1]
Length = 742
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 16/149 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V+ P + ++G G GK+ + V + N I + +L S GE K IRQ +R+A
Sbjct: 493 VEPPAGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKAR 552
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ +F ++LD+ A G T V+ ++VN L +L G+ EE
Sbjct: 553 QVAP----TVIFFDELDSLAPGRGQTGGNNVSERVVNQLL---------TELDGLEEMEE 599
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKF 304
V +I N + LIR GR ++
Sbjct: 600 ---VMVIAATNRPDIIDPALIRSGRFDRL 625
>gi|186682012|ref|YP_001865208.1| ATPase [Nostoc punctiforme PCC 73102]
gi|186464464|gb|ACC80265.1| AAA ATPase, central domain protein [Nostoc punctiforme PCC 73102]
Length = 503
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 84/201 (41%), Gaps = 30/201 (14%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
LP+ + +++GI +G GKS + + + + + G L G GE R R
Sbjct: 256 LPHPRGLMLVGI---QGTGKSLTAKAIAHHWHLPLLRLDVGRLFGGLVGES----ESRTR 308
Query: 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 272
+ + + C L+I+++D +G ++ V T +N +
Sbjct: 309 QMIQVAEALAPCILWIDEIDKAFAGLGSKGDAGTASR-VFGTFIN-------------WL 354
Query: 273 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS---GIFRTDNVP 327
E++ V ++ T ND L ++R GR ++ ++ PT+E+R + R N+
Sbjct: 355 AEKSSPVFVVATANDIQALPPEMLRKGRFDEIFFVGLPTQEERKAIYDVHLSRLRPHNLK 414
Query: 328 KEDIVKLVDTFPGQSIDFFGA 348
DI +L P DF GA
Sbjct: 415 SYDIERLAYETP----DFSGA 431
>gi|94734052|emb|CAK10965.1| proteasome (prosome, macropain) 26S subunit, ATPase, 6 [Danio
rerio]
Length = 269
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 69/140 (49%), Gaps = 14/140 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 142 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 197
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 198 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 247
Query: 284 TGNDFSTLYAPLIRDGRMEK 303
N TL L+R GR+++
Sbjct: 248 ATNRPDTLDPALLRPGRLDR 267
>gi|14521559|ref|NP_127035.1| cell division control protein [Pyrococcus abyssi GE5]
gi|5458778|emb|CAB50265.1| ATPase of the AAA+ family [Pyrococcus abyssi GE5]
gi|380742169|tpe|CCE70803.1| TPA: cell division control protein [Pyrococcus abyssi GE5]
Length = 840
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 67/150 (44%), Gaps = 16/150 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 586 LYGPPGTGKTLLAKAVATESQANFIAIRGPEVLSKWVGESEKRIREIFRKA----RQASP 641
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A G V ++++N L ++ G+ EN V +I
Sbjct: 642 AIIFIDEIDAIAPARGTAEGEKVTDRIINQLL---------TEMDGLV---ENSGVVVIA 689
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTREDR 313
N L L+R GR ++ P +++
Sbjct: 690 ATNRPDILDPALLRPGRFDRLILVPAPDEK 719
>gi|347738276|ref|ZP_08869829.1| ATP-dependent Zn protease [Azospirillum amazonense Y2]
gi|346918743|gb|EGY00588.1| ATP-dependent Zn protease [Azospirillum amazonense Y2]
Length = 745
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 23/143 (16%)
Query: 166 GGKGQGKSFQCELVFAKMGINPIMMSAGELES-GNAGEPAKLIRQRYREAADIIKKGKMC 224
G G GK+ Q + A+ GI I S G +S G+ G+ + + + +AA + K+C
Sbjct: 344 GPPGVGKTQQLITLAARSGIPLISTSHGRWQSAGHQGDMLAAMARTFEDAA----RQKLC 399
Query: 225 CLFINDLDA--GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282
+F+++LDA GR G + + N+Q++N + + D R II
Sbjct: 400 LVFVDELDAFLARGRGGNPSHESYNHQVMN-FFLELLDGAAG-------------RTGII 445
Query: 283 VTG--NDFSTLYAPLIRDGRMEK 303
V G N L LIR GRME+
Sbjct: 446 VVGACNFVERLDPALIRPGRMER 468
>gi|340383794|ref|XP_003390401.1| PREDICTED: 26S protease regulatory subunit 10B-like [Amphimedon
queenslandica]
Length = 401
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P ++G G GK+ V ++ N + + + + GE A+LIR+ + A
Sbjct: 176 IKAPKGCLLYGPPGTGKTLLARAVAKQLDANFLKVVSSAIVDKYIGESARLIREMFAYAK 235
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA G+ ++ T ++ + TLM + + Q+ G +
Sbjct: 236 D----HQPCIIFMDEIDAIGGKR--FSEGTSADREIQRTLMELLN-----QMDGF---DS 281
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P R D + + S I + V E
Sbjct: 282 LGQVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQARLDILKIHASPITKMGEVDYE 341
Query: 330 DIVKLVDTFPGQSI 343
+VKL + F G +
Sbjct: 342 AVVKLSEDFNGADL 355
>gi|156084860|ref|XP_001609913.1| 26S proteasome AAA-ATPase subunit RPT4a [Babesia bovis T2Bo]
gi|154797165|gb|EDO06345.1| 26S proteasome AAA-ATPase subunit RPT4a, putative [Babesia bovis]
Length = 404
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 111/245 (45%), Gaps = 34/245 (13%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
VK P + ++G G GK+ + + + M + + + A + GE A++IR+ + A
Sbjct: 179 VKPPKGVLLYGPPGTGKTLMAKALASSMDCHFLKVVASAVVDKYIGESARIIREMFGYAK 238
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA G+ +Q T ++ + TLM + L G +E
Sbjct: 239 D----HQPCIIFMDEIDAIGGKR--FSQGTSADREIQRTLMELL-----THLDGF---DE 284
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 329
+V II+ N L L+R GR+++ P +R D + + S + + ++
Sbjct: 285 LGQVKIIMATNRPDVLDPALMRPGRIDRKIEIPLPNESSRVDILKIHSSKLNKKGDIDYV 344
Query: 330 DIVKLVDTFPGQSIDFFG------ALRARVYDDEVRKWISEVGIERIGKRLVNSK--EGP 381
I +L D F G + A+RA +R ++ E + ++L +K EG
Sbjct: 345 AICRLCDGFNGADMRNVCTEAGIFAIRA------MRDYVVEEDFFKAARKLTETKKLEGT 398
Query: 382 PTFEQ 386
T+E+
Sbjct: 399 LTYEK 403
>gi|169769649|ref|XP_001819294.1| 26S protease subunit rpt4 [Aspergillus oryzae RIB40]
gi|83767153|dbj|BAE57292.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391863488|gb|EIT72796.1| 26S proteasome regulatory complex, ATPase RPT4 [Aspergillus oryzae
3.042]
Length = 393
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + M N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSMETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRTD-NVPKE 329
+ II+ N TL L+R GR+++ P R + + + S + + ++ E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHSSTVQLEGDIDFE 333
Query: 330 DIVKLVDTFPGQSI 343
+VK+ D G +
Sbjct: 334 SVVKMSDGLNGADL 347
>gi|70995044|ref|XP_752288.1| AAA family ATPase/60S ribosome export protein Rix7 [Aspergillus
fumigatus Af293]
gi|66849923|gb|EAL90250.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Aspergillus fumigatus Af293]
gi|159131044|gb|EDP56157.1| AAA family ATPase/60S ribosome export protein Rix7, putative
[Aspergillus fumigatus A1163]
Length = 784
Score = 46.2 bits (108), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 72/149 (48%), Gaps = 13/149 (8%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 214
NV+ P + + G G GK+ A++G+ I +SA + SG +GE K +R+ + EA
Sbjct: 250 NVQPPRGVLLHGPPGCGKTMIANAFAAELGVPFIPISAPSIVSGMSGESEKALREHFEEA 309
Query: 215 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 274
K+ C +FI+++DA + + Q + ++V A L+ D+ ++
Sbjct: 310 ----KRLAPCLIFIDEIDAITPKR-ESAQREMEKRIV-AQLLTCMDD-------LALDKT 356
Query: 275 ENPRVPIIVTGNDFSTLYAPLIRDGRMEK 303
+ V ++ N +L A L R GR +K
Sbjct: 357 DGKPVIVLAATNRPDSLDAALRRGGRFDK 385
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 82/200 (41%), Gaps = 19/200 (9%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+ P + +WG G GK+ + V + N I + EL + GE + +RQ + A
Sbjct: 555 ITAPTGVLLWGPPGCGKTLLAKAVANESRANFISVKGPELLNKFVGESERAVRQVFVRAR 614
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ C +F ++LDA R + ++VN L + ++ Q G+Y
Sbjct: 615 SSVP----CIIFFDELDALVPRRDDALS-EASARVVNTLLTELDGLGSSRQ--GIY---- 663
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVP-KEDIV 332
+I N + ++R GR+E + P +R+ + + R + ED+
Sbjct: 664 -----VIAATNRPDIIDPAMLRPGRLETLLYVSLPNPLERVEILKTLVRKLPIEFNEDMR 718
Query: 333 KLVDTFPGQSIDFFGALRAR 352
+L + G S G+L R
Sbjct: 719 RLAEECEGFSGADLGSLLRR 738
>gi|345006630|ref|YP_004809483.1| adenosinetriphosphatase [halophilic archaeon DL31]
gi|344322256|gb|AEN07110.1| Adenosinetriphosphatase [halophilic archaeon DL31]
Length = 756
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 61/157 (38%), Gaps = 22/157 (14%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 214
N P + + G G GK+ + + G+N + ++ EL GE K +R+ + A
Sbjct: 529 NTTPPTGVLLHGSPGTGKTLLARAIAGESGVNFLQVAGPELLDRYVGESEKAVRELFERA 588
Query: 215 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN---IADNPTNVQLPGMY 271
++ +F ++LDA G GG V ++V+ L +ADNP V L
Sbjct: 589 ----RQAAPSIVFFDELDAIGGERGGGNDSGVGERVVSQLLTELDRVADNPGIVTLAAT- 643
Query: 272 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
N + L+R GR E P
Sbjct: 644 --------------NRKGAIDPALLRPGRFESHVRVP 666
>gi|354610211|ref|ZP_09028167.1| 26S proteasome subunit P45 family [Halobacterium sp. DL1]
gi|353195031|gb|EHB60533.1| 26S proteasome subunit P45 family [Halobacterium sp. DL1]
Length = 411
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V+ P + + G G GK+ + V + I M+ EL GE ++L+R + E A
Sbjct: 183 VEPPSGVLLHGPPGTGKTMLAKAVANQTDATFIKMAGSELVRKFIGEGSRLVRDLF-ELA 241
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + + +FI+++DA A + T T + V T+M + L M +E
Sbjct: 242 D---QNEPAIIFIDEIDAVAAKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDE 288
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSGIFR-TDNVPKE 329
V II N F L + ++R GR ++ P RE + + +G ++V
Sbjct: 289 RGDVRIIAATNRFDMLDSAILRPGRFDRLIEVPHPEVEARERILEIHAGEMNVAEDVDFS 348
Query: 330 DIVKLVDTFPGQSI 343
D+ + D F G +
Sbjct: 349 DLAEQTDGFSGAQL 362
>gi|5669047|gb|AAD46145.1| 19S proteasome regulatory complex subunit S6A [Arabidopsis
thaliana]
Length = 424
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 81/195 (41%), Gaps = 22/195 (11%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V+ P + ++G G GK+ A+ + ++ +L G+ AKL+R ++
Sbjct: 202 VRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQ--- 258
Query: 216 DIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 274
+ K+ C +FI+++DA G R Q L+N QL G + E
Sbjct: 259 -LAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN--------QLDGFSSDE 309
Query: 275 ENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPK---- 328
R+ +I N L L+R GR+++ + PT E R + R NV
Sbjct: 310 ---RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVHF 366
Query: 329 EDIVKLVDTFPGQSI 343
E++ + D F G +
Sbjct: 367 EELARSTDDFHGAQL 381
>gi|346979381|gb|EGY22833.1| 26S protease subunit RPT4 [Verticillium dahliae VdLs.17]
Length = 373
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 83/186 (44%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V + + N + + + + GE A+LIR+ + A K+ +
Sbjct: 156 LYGPPGTGKTLLARAVASSLETNFLKIVSSAIVDKYIGESARLIREMFGYA----KEHEP 211
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + G + II+
Sbjct: 212 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG--------KTKIIM 261
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + +G+ + E +VK+ D
Sbjct: 262 ATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHAAGVITDGEIDFESVVKMSDG 321
Query: 338 FPGQSI 343
G +
Sbjct: 322 LNGADL 327
>gi|448730944|ref|ZP_21713247.1| proteasome-activating nucleotidase [Halococcus saccharolyticus DSM
5350]
gi|445792538|gb|EMA43139.1| proteasome-activating nucleotidase [Halococcus saccharolyticus DSM
5350]
Length = 405
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 91/225 (40%), Gaps = 24/225 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
++ P + + G G GK+ + V I M+ EL GE A+L+R +
Sbjct: 182 IEPPTGVLLHGPPGTGKTMLAKAVANGTDATFIKMAGSELVRKFIGEGARLVRDLF---- 237
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ + + +FI++LDA A + T T + V T+M + L M +E
Sbjct: 238 ELANEHEPAVIFIDELDAVAAKR--TDSKTSGDAEVQRTMMQL--------LNEMDGFDE 287
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCS-GIFRTDNVPKE 329
V II N F L ++R GR ++ P RE + + G D+V E
Sbjct: 288 RGDVSIIAATNRFDMLDPAILRPGRFDRLIEVPEPDAEGREQIFQIHTRGTTLADDVDFE 347
Query: 330 DIVKLVDTFPGQSIDFF----GALRARVYDDEVRKWISEVGIERI 370
++ +L G I+ G R EVR E +E+I
Sbjct: 348 ELAELTAGRSGAEIESLATEAGMFAIRDDRTEVRMADFEAALEKI 392
>gi|14591590|ref|NP_143672.1| cell division control [Pyrococcus horikoshii OT3]
gi|3258278|dbj|BAA30961.1| 798aa long hypothetical transitional endoplasmic reticulum ATPase
[Pyrococcus horikoshii OT3]
Length = 798
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 21/173 (12%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 558 LYGPPGTGKTLLAKAVATESEANFIAVRGPEVLSKWVGESEKNIREIFRKA----RQAAP 613
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A R GT V ++++N L M +EN V +I
Sbjct: 614 TVIFIDEIDAIAPRR-GTDVNRVTDRLINQLLTE------------MDGIQENTGVVVIA 660
Query: 284 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTDNVPKEDIVKL 334
N L L+R GR ++ AP E R + T ++P D V L
Sbjct: 661 ATNRPDILDPALLRPGRFDRLILVPAPDEEARFEIFK--VHTRSMPLADDVDL 711
>gi|14590568|ref|NP_142636.1| cell division control [Pyrococcus horikoshii OT3]
gi|3257095|dbj|BAA29778.1| 840aa long hypothetical cell division control protein (transitional
endoplasmic reticulum ATPase) [Pyrococcus horikoshii
OT3]
Length = 840
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 20/173 (11%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 586 LYGPPGTGKTLLAKAVATESEANFIAVRGPEVLSKWVGESEKRIREIFRKA----RQAAP 641
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A G + V ++++N L ++ G+ EN V +I
Sbjct: 642 AIIFIDEIDAIAPARGTSEGEKVTDRIINQLL---------TEMDGLV---ENSGVVVIA 689
Query: 284 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTDNVPKEDIVKL 334
N L L+R GR ++ AP E R + T ++P D V L
Sbjct: 690 ATNRPDILDPALLRPGRFDRLILVPAPDEEARFEIFK--VHTRSMPLADDVDL 740
>gi|448329681|ref|ZP_21518978.1| AAA family ATPase, CDC48 subfamily protein [Natrinema versiforme
JCM 10478]
gi|445613605|gb|ELY67301.1| AAA family ATPase, CDC48 subfamily protein [Natrinema versiforme
JCM 10478]
Length = 743
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 16/149 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V P + ++G G GK+ + V + N I + +L S GE K IRQ +R+A
Sbjct: 493 VDPPAGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKAR 552
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ +F ++LDA A GG T V+ ++VN L +L G+ EE
Sbjct: 553 QV----SPTVIFFDELDALAPGRGGETGSNVSERVVNQLL---------TELDGL---EE 596
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKF 304
V +I N + L+R GR ++
Sbjct: 597 MGNVMVIGATNRPDMIDPALLRSGRFDRL 625
>gi|282162923|ref|YP_003355308.1| proteasome-activating nucleotidase [Methanocella paludicola SANAE]
gi|282155237|dbj|BAI60325.1| proteasome-activating nucleotidase [Methanocella paludicola SANAE]
Length = 395
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 14/158 (8%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
++ P + ++G G GK+ + V I MS EL GE A+L+R ++ A
Sbjct: 169 IEAPRGVLLYGPPGTGKTLLAKAVAHASKSTFIRMSGSELVHKFIGEGAQLVRDLFQMAR 228
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D +FI++LDA GR T T + VN T+M + L M +
Sbjct: 229 D----KAPSIIFIDELDAVGGRR--THDGTTGSAEVNRTMMQL--------LSEMDGFTD 274
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 313
V I+ N L ++R GR ++ P +D+
Sbjct: 275 RGNVRIMAATNRIDMLDPAILRPGRFDRIIEIPLPDDK 312
>gi|340754488|ref|ZP_08691240.1| hypothetical protein FSAG_02050 [Fusobacterium sp. 2_1_31]
gi|229423993|gb|EEO39040.1| hypothetical protein FSAG_02050 [Fusobacterium sp. 2_1_31]
Length = 523
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 74/177 (41%), Gaps = 20/177 (11%)
Query: 148 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 207
K+ L ++ P + + G G GKS + + A + + ++ G+
Sbjct: 259 KDLLRSKGLRSPRGILLVGVPGCGKSLSAKAISASWKLPLYRLDFATVQGSYVGQS---- 314
Query: 208 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 267
Q+ ++A + C L+I++++ G G + V+ +MV L
Sbjct: 315 EQQLKDALTTAENVSPCILWIDEIEKGLSGAGSSNDGGVSTRMVGQFLF----------- 363
Query: 268 PGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 322
+ QE +V ++ T ND S L + L+R GR ++ ++ PT E+R + R
Sbjct: 364 ---WLQESKKQVFVVATANDVSMLPSELLRRGRFDELFFIDLPTAEERYDIIKMYMR 417
>gi|448593337|ref|ZP_21652335.1| proteasome-activating nucleotidase [Haloferax elongans ATCC
BAA-1513]
gi|445730245|gb|ELZ81835.1| proteasome-activating nucleotidase [Haloferax elongans ATCC
BAA-1513]
Length = 412
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + + I M+ EL GE A+L+R ++ AA + +
Sbjct: 191 LYGPPGTGKTMLAKAVANETNASFIKMAGSELVQKFIGEGARLVRDLFKLAA----EREP 246
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M ++ + II
Sbjct: 247 VIIFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDDRGEIRIIA 296
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 297 ATNRFDMLDEAILRPGRFDRLIEVP 321
>gi|302348206|ref|YP_003815844.1| Cell division control protein 48, AAA family [Acidilobus
saccharovorans 345-15]
gi|302328618|gb|ADL18813.1| Cell division control protein 48, AAA family [Acidilobus
saccharovorans 345-15]
Length = 740
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 76/173 (43%), Gaps = 16/173 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + G N I + E+ S GE K IR+ +++A ++
Sbjct: 502 LFGPPGTGKTMLAKAVATESGANFIAIRGPEVLSKWVGESEKAIREIFKKA----RQYAP 557
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+F +++++ A G V ++V+ L I D TN++ V +I
Sbjct: 558 AVVFFDEIESIASLRGTEEDSNVGERIVSQLLTEI-DGITNLE-----------NVVVIA 605
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVD 336
N + L+R GR EK + P +++ + T NVP + V L +
Sbjct: 606 ATNRPDLVDPALLRPGRFEKLIYVPPPDEKGRLEILKIHTRNVPLAEDVDLAE 658
>gi|259484776|tpe|CBF81287.1| TPA: hypothetical protein similar to PSMC6 subunit (Broad)
[Aspergillus nidulans FGSC A4]
Length = 393
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 88/194 (45%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + M N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSMETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT-----REDRIGVCSGIFRTD-NVPKE 329
+ II+ N TL L+R GR+++ P R + + + S + + ++ E
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHSSTVQMEGDIDFE 333
Query: 330 DIVKLVDTFPGQSI 343
+VK+ D G +
Sbjct: 334 SVVKMSDGLNGADL 347
>gi|21226549|ref|NP_632471.1| cell division control protein [Methanosarcina mazei Go1]
gi|452209052|ref|YP_007489166.1| Cell division protein FtsH [Methanosarcina mazei Tuc01]
gi|20904821|gb|AAM30143.1| Cell division control protein [Methanosarcina mazei Go1]
gi|452098954|gb|AGF95894.1| Cell division protein FtsH [Methanosarcina mazei Tuc01]
Length = 792
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 24/191 (12%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V + N I + E+ S GE K IR+ +++A
Sbjct: 546 IKAPKGILLYGPPGTGKTLIAQAVAKESNANFISVKGPEMFSKWLGESEKAIRETFKKAR 605
Query: 216 DIIKKGKMCCLFINDLDAGAGRMG-GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 274
+ C +F +++D+ AG G +T + +++N L ++ G+ +
Sbjct: 606 QV----SPCVVFFDEIDSIAGMQGMESTDSRTSERVLNQLL---------TEMDGLETLK 652
Query: 275 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTDNVP-KEDI 331
+ V II N + L ++R GR ++ + AP R+ R+ + T N P ED+
Sbjct: 653 D---VVIIAATNRPNLLDPAILRPGRFDRLVYVGAPDRKGRLRIFK--IHTQNTPLAEDV 707
Query: 332 --VKLVDTFPG 340
L DT G
Sbjct: 708 NLENLADTTEG 718
>gi|76802726|ref|YP_330821.1| AAA-type ATPase (transitional ATPase homolog) [Natronomonas
pharaonis DSM 2160]
gi|76558591|emb|CAI50183.1| AAA-type ATPase (CDC48 subfamily) [Natronomonas pharaonis DSM 2160]
Length = 702
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 22/156 (14%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 214
N P + ++G G GK+ + + +N + ++ EL GE K +R+ +
Sbjct: 478 NTDPPTGILLYGPPGTGKTLLARALAGESDVNFVSVAGPELLDKYVGESEKAVREVF--- 534
Query: 215 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYT--VNNQMVNATLMNIADNPTNVQLPGMYN 272
D ++ +F +++DA AG G ++ T V +Q++ A L +ADNP V
Sbjct: 535 -DRARQAAPAIVFFDEIDALAGVRGDASEATERVVSQLL-AELDGLADNPNMV------- 585
Query: 273 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
++ N + L L+R GR+E P
Sbjct: 586 --------VLAATNRKAALDPALLRPGRLETHVEVP 613
>gi|389853179|ref|YP_006355413.1| cell division protein CDC48 [Pyrococcus sp. ST04]
gi|388250485|gb|AFK23338.1| cell division protein CDC48 [Pyrococcus sp. ST04]
Length = 796
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 17/171 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + N I + E+ S GE K IR+ +R+A ++
Sbjct: 556 LYGPPGTGKTLLAKAVATESEANFIAVRGPEILSKWVGESEKNIREIFRKA----RQAAP 611
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A R GT V ++++N L ++ G+ EN V +I
Sbjct: 612 TVIFIDEIDAIAPRR-GTDVNRVTDRIINQLL---------TEMDGLV---ENSGVVVIA 658
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKL 334
N + L+R GR ++ P +++ + T N+P + V L
Sbjct: 659 ATNRPDIIDPALLRPGRFDRLILVPAPDEKARLEIFKVHTRNMPLAEDVSL 709
>gi|346324585|gb|EGX94182.1| ribosome biogenesis ATPase RIX7 [Cordyceps militaris CM01]
Length = 732
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 79/194 (40%), Gaps = 25/194 (12%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+WG G GK+ + V + + I+++ EL + GE + +R+ + A +
Sbjct: 493 LWGPPGCGKTLVAQAVANEAHASFILINGPELLNKYVGESERAVRELFARA----RSSTP 548
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C LF ++ D+ A G + + ++VN L + + G+Y II
Sbjct: 549 CILFFDEFDSIAPSRNGGSGSEASTRVVNTLLTELDGAQARL---GVY---------IIA 596
Query: 284 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQ 341
T N + ++R GR+ + F P+ R+ + I+RT + E P +
Sbjct: 597 TTNRPDMIDEAMLRPGRLSQHIFIDLPSATQRVDILRTIYRTRHKAAEGDAHAAGLAPLE 656
Query: 342 SI-------DFFGA 348
I DF GA
Sbjct: 657 GIARDERCRDFSGA 670
>gi|225680854|gb|EEH19138.1| 26S protease regulatory subunit S10B [Paracoccidioides brasiliensis
Pb03]
Length = 382
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + + N + + + + GE A+LIR+ + A
Sbjct: 157 IKPPKGVLLYGPPGTGKTLLARAVASSLETNFLKVVSSAIVDKYIGESARLIREMFGYA- 215
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + QL G +
Sbjct: 216 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DY 262
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
+ II+ N TL L+R GR+++ P + R+ + SG+ + E
Sbjct: 263 LGKTKIIMATNRPDTLDPALLRAGRLDRKIEIPLPNEVGRLEILKIHASGVAIEGEIDFE 322
Query: 330 DIVKLVDTFPGQSI 343
IVK+ D G +
Sbjct: 323 SIVKMSDGLNGADL 336
>gi|94499450|ref|ZP_01305987.1| ATPase of the AAA+ class [Bermanella marisrubri]
gi|94428204|gb|EAT13177.1| ATPase of the AAA+ class [Oceanobacter sp. RED65]
Length = 490
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 84/202 (41%), Gaps = 24/202 (11%)
Query: 149 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 208
+FL+ P L + G +G GKS + + + + + G L + GE K
Sbjct: 253 SFLHENESMRPKGLLLLGVQGSGKSLAAKAIAGSWQLPLLRLDMGALYNKFFGETEK--- 309
Query: 209 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 268
REA ++ + C L++++++ G G V+ +++ L +A+ P V +
Sbjct: 310 -NLREALNLAQLMSPCVLWLDEIEKGLG--TDQNDSGVSQRILGTLLTWMAERPEPVFM- 365
Query: 269 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNV 326
+ T ND L A ++R GR ++ ++ P E R + + N+
Sbjct: 366 -------------VATANDIQKLPAEMVRKGRFDEVFFVDLPKEESRQAIFEIHLKKRNI 412
Query: 327 PKEDIVKLVDTFPGQSIDFFGA 348
E + +DT QS F GA
Sbjct: 413 DPESVE--LDTCIMQSEGFSGA 432
>gi|70991445|ref|XP_750571.1| proteasome regulatory particle subunit Rpt4 [Aspergillus fumigatus
Af293]
gi|66848204|gb|EAL88533.1| proteasome regulatory particle subunit Rpt4, putative [Aspergillus
fumigatus Af293]
gi|159124127|gb|EDP49245.1| proteasome regulatory particle subunit Rpt4, putative [Aspergillus
fumigatus A1163]
Length = 393
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 14/153 (9%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V + M N + + + + GE A+LIR+ + A
Sbjct: 168 IKPPKGVLLYGPPGTGKTLLARAVASSMETNFLKVVSSAIVDKYIGESARLIREMFGYA- 226
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 227 ---KEHEPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQLDGFDYLG------ 275
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
+ II+ N TL L+R GR+++ P
Sbjct: 276 --KTKIIMATNRPDTLDPALLRAGRLDRKIEIP 306
>gi|448633745|ref|ZP_21674244.1| cell division control protein 48 [Haloarcula vallismortis ATCC
29715]
gi|445750436|gb|EMA01874.1| cell division control protein 48 [Haloarcula vallismortis ATCC
29715]
Length = 757
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 98/228 (42%), Gaps = 22/228 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + N I + EL + GE K +R+ + +A ++
Sbjct: 505 MYGPPGTGKTLLAKAVANEAQSNFISVKGPELLNKFVGESEKGVREVFSKA----RENAP 560
Query: 224 CCLFINDLDAGAG-RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282
+F +++D+ AG R GGTT V ++V+ L +L G+ EE V ++
Sbjct: 561 TVVFFDEIDSIAGERGGGTTDSGVGERVVSQLL---------TELDGI---EEMENVVVV 608
Query: 283 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQS 342
T N + L+R GR+++ P ++ T N P D V L D ++
Sbjct: 609 ATTNRPDLIDDALLRPGRLDRHVHVPVPDEDARRAIFQVHTRNKPLADGVDL-DELARRT 667
Query: 343 IDFFGALRARVYDD----EVRKWISEVGIERIGKRLVNSKEGPPTFEQ 386
+ GA V + R++I+ V E IG + N + FE
Sbjct: 668 DGYVGADIEAVAREASMAATREFINSVDPEEIGDSVSNVRVTMDHFEH 715
>gi|443327948|ref|ZP_21056554.1| AAA+ family ATPase [Xenococcus sp. PCC 7305]
gi|442792452|gb|ELS01933.1| AAA+ family ATPase [Xenococcus sp. PCC 7305]
Length = 498
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 90/205 (43%), Gaps = 38/205 (18%)
Query: 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 212
LPN + L+ GI +G GKS + + + + + G L +G GE R R
Sbjct: 256 LPNPRGLLLAGI---QGTGKSLTAKAIAHNWHLPLLRLDVGRLFAGLVGES----ESRTR 308
Query: 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY- 271
+ ++ + C L+I+++D GG+ Q D+ T ++ G +
Sbjct: 309 QMINLAEALAPCILWIDEIDKAFA--GGSAQ---------------GDSGTTSRVFGTFI 351
Query: 272 ---NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDR---IGVCSGIFRT 323
++++P V ++ T N+ TL ++R GR ++ ++ P++E+R V G R
Sbjct: 352 TWLAEKQSP-VFVVATANNIQTLPPEMLRKGRFDEIFFVGLPSQEEREAIFQVHLGKLRP 410
Query: 324 DNVPKEDIVKLVDTFPGQSIDFFGA 348
N+ D +L P +F GA
Sbjct: 411 HNLKNYDFKRLAYETP----EFSGA 431
>gi|399217078|emb|CCF73765.1| unnamed protein product [Babesia microti strain RI]
Length = 688
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 79/189 (41%), Gaps = 25/189 (13%)
Query: 126 DNTLDGLYIAPAFMDKVVVHITKNFLNLPN------VKVPLILGIWGGKGQGKSFQCELV 179
D T D + MD++V + +L P K+P + + G G GK+ +
Sbjct: 196 DTTFDDVKGCDEVMDEIVEIV--EYLKHPEKFERLGAKLPKGILLCGPPGTGKTLIARAI 253
Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239
+ + I S E E G A+ IR ++ A I C +FI++LDA
Sbjct: 254 AGEAKVPFIHTSGSEFEEMFVGVGARRIRDLFKTARQIAP----CIIFIDELDA-----V 304
Query: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 299
G+ + T ++ V TL N V+L G ++N + +I N +L L R G
Sbjct: 305 GSKRSTTDHNTVRMTL-----NQLLVELDGF---KKNEGIVVICATNFPESLDKALTRPG 356
Query: 300 RMEKFYWAP 308
R++K P
Sbjct: 357 RLDKTIHIP 365
>gi|357132328|ref|XP_003567782.1| PREDICTED: ATP-dependent zinc metalloprotease FTSH 5,
mitochondrial-like [Brachypodium distachyon]
Length = 712
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 55/206 (26%), Positives = 90/206 (43%), Gaps = 32/206 (15%)
Query: 116 ISQGLR-----QYSLDNT-----LDGLYIAPAFMDKVVVHIT--KNFLNLPNVKVPLILG 163
IS+GLR Q SLD++ + G+ A A ++++V ++ K F L K+P +
Sbjct: 199 ISKGLRLNEELQPSLDSSTKFSDVKGVDEAKAELEEIVHYLRDPKRFTRLGG-KLPKGVL 257
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+ G G GK+ + + G+ S E E G A+ +R + A KK
Sbjct: 258 LVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVGARRVRDLFSAA----KKRSP 313
Query: 224 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282
C +FI+++DA G R QY M + N V+L G ++N + +I
Sbjct: 314 CIIFIDEIDAIGGSRNPKDQQY-----------MKMTLNQLLVELDGF---KQNDGIIVI 359
Query: 283 VTGNDFSTLYAPLIRDGRMEKFYWAP 308
N +L L+R GR ++ P
Sbjct: 360 AATNFPQSLDKALVRPGRFDRHIVVP 385
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,883,642,262
Number of Sequences: 23463169
Number of extensions: 301025211
Number of successful extensions: 738915
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 314
Number of HSP's successfully gapped in prelim test: 4484
Number of HSP's that attempted gapping in prelim test: 734657
Number of HSP's gapped (non-prelim): 5556
length of query: 438
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 292
effective length of database: 8,933,572,693
effective search space: 2608603226356
effective search space used: 2608603226356
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 78 (34.7 bits)