BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013704
(438 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 560 bits (1443), Expect = e-160, Method: Compositional matrix adjust.
Identities = 263/293 (89%), Positives = 280/293 (95%)
Query: 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM 183
+LDN LDG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELVF KM
Sbjct: 1 NLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKM 60
Query: 184 GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQ 243
GINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCLFINDLDAGAGRMGGTTQ
Sbjct: 61 GINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQ 120
Query: 244 YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 303
YTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLIRDGRMEK
Sbjct: 121 YTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEK 180
Query: 304 FYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 363
FYWAPTREDRIGVC+GIFRTDNVP ED+VK+VD FPGQSIDFFGALRARVYDDEVRKW+S
Sbjct: 181 FYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVS 240
Query: 364 EVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 416
GIE+IG +L+NS +GPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLADK
Sbjct: 241 GTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADK 293
>pdb|3THG|A Chain A, Crystal Structure Of The Creosote Rubisco Activase
C-Domain
Length = 107
Score = 188 bits (477), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 89/102 (87%), Positives = 96/102 (94%)
Query: 309 TREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIE 368
TREDRIGVC GIFRTDNV +DIVKLVDTFPGQSIDFFGALRARVYDDEVRKW+SEVG++
Sbjct: 6 TREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSEVGVD 65
Query: 369 RIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKR 410
IGK+LVNSKEGPP+FEQPKMT+DKLL YG MLVQEQENVKR
Sbjct: 66 TIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKR 107
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 320
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
II+ N TL L+R GR+++ P + R+ + + + +T E
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFE 377
Query: 330 DIVKLVDTFPGQSI 343
VK+ D F G I
Sbjct: 378 AAVKMSDGFNGADI 391
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 148 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 207
+ FL L KVP + G G GK+ + V + + + M+ E G A +
Sbjct: 29 ERFLQL-GAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARV 87
Query: 208 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 267
R ++EA + C ++I+++DA G+ TT +N TL N V++
Sbjct: 88 RSLFKEA----RARAPCIVYIDEIDA-VGKKRSTTMSGFSNTEEEQTL-----NQLLVEM 137
Query: 268 PGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDR 313
GM + V ++ + N L L+R GR+++ F PT ++R
Sbjct: 138 DGMGTTDH---VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQER 182
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 81/195 (41%), Gaps = 22/195 (11%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
++ P ++G G GK+ A+ + ++A +L GE AKL+ R+A
Sbjct: 212 IRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLV----RDAF 267
Query: 216 DIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 274
+ K+ +FI++LDA G R Q L+N QL G + +
Sbjct: 268 ALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLN--------QLDGFSSDD 319
Query: 275 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGVCSGIFRT----DNVPK 328
RV ++ N L L+R GR+++ + P+ + R + R D++
Sbjct: 320 ---RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW 376
Query: 329 EDIVKLVDTFPGQSI 343
+++ + D F G +
Sbjct: 377 QELARSTDEFNGAQL 391
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 69/169 (40%), Gaps = 19/169 (11%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+ G G GK+ + V + G+N I + EL + GE + +RQ ++ A K
Sbjct: 49 LAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRA----KNSAP 104
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F +++DA R + + ++VN L M E +V I+
Sbjct: 105 CVIFFDEVDALCPRR-SDRETGASVRVVNQLLTE------------MDGLEARQQVFIMA 151
Query: 284 TGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPKED 330
N + ++R GR++K F P DR+ + I + P D
Sbjct: 152 ATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLD 200
>pdb|1ZIX|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
Mutant (E36d, R105h, C123s, G211d, K234n)- 1.8 A
Length = 236
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 4/104 (3%)
Query: 101 MESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVV----VHITKNFLNLPNV 156
+E+ HYA Y GL YSL L L A ++D+ V V + K +P V
Sbjct: 100 LEAAIHYARHQPYSNGKVGLVGYSLGGALAFLVAAKGYVDRAVGYYGVGLEKQLNKVPEV 159
Query: 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 200
K P + + G + +L+ G NP++ E+G++
Sbjct: 160 KHPALFHMGGQDHFVPAPSRQLITEGFGANPLLQVHWYEEAGHS 203
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 90/197 (45%), Gaps = 26/197 (13%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V + + + EL G+ +L RQ ++ A
Sbjct: 213 IKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAG 272
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNN---QMVNATLMNIADNPTNVQLPGMYN 272
+ +FI+++DA GT +Y N+ + + T++ + + QL G +
Sbjct: 273 E----NAPSIVFIDEIDAI-----GTKRYDSNSGGEREIQRTMLELLN-----QLDGFDD 318
Query: 273 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAP---TREDRIGV-CSGIFRTDNV 326
+ + V +I+ N TL LIR GR+++ + P T++ +G+ S + +++V
Sbjct: 319 RGD---VKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV 375
Query: 327 PKEDIVKLVDTFPGQSI 343
E +V D G I
Sbjct: 376 NLETLVTTKDDLSGADI 392
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 14/150 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V I ++ E GE +++R +R A ++
Sbjct: 211 LYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLA----RENAP 266
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++D+ A + T +++ V L+ + Q+ G ++Q N V +I+
Sbjct: 267 SIIFIDEVDSIATKRFDAQ--TGSDREVQRILIELL-----TQMDG-FDQSTN--VKVIM 316
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTREDR 313
N TL L+R GR+++ P+ DR
Sbjct: 317 ATNRADTLDPALLRPGRLDRKIEFPSLRDR 346
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 22/149 (14%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY---REAADIIKK 220
++G G GK+ V I +S EL GE ++++R+ + RE A I
Sbjct: 187 LYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSI-- 244
Query: 221 GKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 279
+F++++D+ G+ R+ G+ Q L+N QL G E + +
Sbjct: 245 -----IFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLN--------QLDGF---ETSKNI 288
Query: 280 PIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
II+ N L L+R GR+++ P
Sbjct: 289 KIIMATNRLDILDPALLRPGRIDRKIEFP 317
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 28/147 (19%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V + I + EL GE A+++R+ + ++ + K
Sbjct: 248 LYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELF----EMARTKKA 303
Query: 224 CCLFINDLDA-GAGRM----GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 278
C +F +++DA G R GG + V T++ + QL G +PR
Sbjct: 304 CIIFFDEIDAVGGARFDDGAGGDNE-------VQRTMLELI-----TQLDGF-----DPR 346
Query: 279 --VPIIVTGNDFSTLYAPLIRDGRMEK 303
+ ++ N +TL L+R GR+++
Sbjct: 347 GNIKVMFATNRPNTLDPALLRPGRIDR 373
>pdb|2BWJ|A Chain A, Structure Of Adenylate Kinase 5
pdb|2BWJ|B Chain B, Structure Of Adenylate Kinase 5
pdb|2BWJ|C Chain C, Structure Of Adenylate Kinase 5
pdb|2BWJ|D Chain D, Structure Of Adenylate Kinase 5
pdb|2BWJ|E Chain E, Structure Of Adenylate Kinase 5
pdb|2BWJ|F Chain F, Structure Of Adenylate Kinase 5
Length = 199
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 12/66 (18%)
Query: 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL---ESGNAGEPAKLIRQRYREAADI 217
I+ I GG G GK QCE + K G +S GEL E + E +KLIR DI
Sbjct: 14 IIFIIGGPGSGKGTQCEKLVEKYGFT--HLSTGELLREELASESERSKLIR-------DI 64
Query: 218 IKKGKM 223
+++G +
Sbjct: 65 MERGDL 70
>pdb|1ZI6|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
(c123s) Mutant- 1.7 A
Length = 236
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 101 MESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVV----VHITKNFLNLPNV 156
+E+ YA Y GL YSL L L A ++D+ V V + K +P V
Sbjct: 100 LEAAIRYARHQPYSNGKVGLVGYSLGGALAFLVAAKGYVDRAVGYYGVGLEKQLNKVPEV 159
Query: 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 200
K P + + G + +L+ G NP++ E+G++
Sbjct: 160 KHPALFHMGGQDHFVPAPSRQLITEGFGANPLLQVHWYEEAGHS 203
>pdb|1ZI9|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
(e36d, C123s) Mutant- 1.5 A
Length = 236
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 101 MESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVV----VHITKNFLNLPNV 156
+E+ YA Y GL YSL L L A ++D+ V V + K +P V
Sbjct: 100 LEAAIRYARHQPYSNGKVGLVGYSLGGALAFLVAAKGYVDRAVGYYGVGLEKQLNKVPEV 159
Query: 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 200
K P + + G + +L+ G NP++ E+G++
Sbjct: 160 KHPALFHMGGQDHFVPAPSRQLITEGFGANPLLQVHWYEEAGHS 203
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GKS+ + V + +S+ +L S GE KL++Q + A ++ K
Sbjct: 65 LYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA----RENKP 120
Query: 224 CCLFINDLDAGAGRMG 239
+FI+++DA G G
Sbjct: 121 SIIFIDEVDALTGTRG 136
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
VK P + ++G G GK+ V + G +++ E+ S AGE +R+ + EA
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA- 293
Query: 216 DIIKKGKMCCLFINDLDAGA---GRMGGTTQYTVNNQMVNATLMN 257
+K +FI++LDA A + G + + +Q++ TLM+
Sbjct: 294 ---EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLL--TLMD 333
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 77/187 (41%), Gaps = 24/187 (12%)
Query: 165 WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC 224
+G G GK+ + + + N I + EL + GE +R+ + +A ++ C
Sbjct: 517 YGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA----RQAAPC 572
Query: 225 CLFINDLD--AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282
LF ++LD A A ++++N L ++ GM ++ V II
Sbjct: 573 VLFFDELDSIAKARGGNIGDGGGAADRVINQIL---------TEMDGMSTKKN---VFII 620
Query: 283 VTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCSGIFRTDNVPK----EDIVKLVD 336
N + ++R GR+++ + P ++ R+ + R V K E + K+ +
Sbjct: 621 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTN 680
Query: 337 TFPGQSI 343
F G +
Sbjct: 681 GFSGADL 687
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
VK P + ++G G GK+ V + G +++ E+ S AGE +R+ + EA
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA- 293
Query: 216 DIIKKGKMCCLFINDLDAGA---GRMGGTTQYTVNNQMVNATLMN 257
+K +FI++LDA A + G + + +Q++ TLM+
Sbjct: 294 ---EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLL--TLMD 333
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 77/187 (41%), Gaps = 24/187 (12%)
Query: 165 WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMC 224
+G G GK+ + + + N I + EL + GE +R+ + +A ++ C
Sbjct: 517 YGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA----RQAAPC 572
Query: 225 CLFINDLD--AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282
LF ++LD A A ++++N L ++ GM ++ V II
Sbjct: 573 VLFFDELDSIAKARGGNIGDGGGAADRVINQIL---------TEMDGMSTKKN---VFII 620
Query: 283 VTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCSGIFRTDNVPK----EDIVKLVD 336
N + ++R GR+++ + P ++ R+ + R V K E + K+ +
Sbjct: 621 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTN 680
Query: 337 TFPGQSI 343
F G +
Sbjct: 681 GFSGADL 687
>pdb|1ZIC|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
(c123s, R206a) Mutant- 1.7 A
Length = 236
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 101 MESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVV----VHITKNFLNLPNV 156
+E+ YA Y GL YSL L L A ++D+ V V + K +P V
Sbjct: 100 LEAAIRYARHQPYSNGKVGLVGYSLGGALAFLVAAKGYVDRAVGYYGVGLEKQLNKVPEV 159
Query: 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 200
K P + + G + +L+ G NP++ E+G++
Sbjct: 160 KHPALFHMGGQDHFVPAPSRQLITEGFGANPLLQVHWYEEAGHS 203
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
VK P + ++G G GK+ V + G +++ E+ S AGE +R+ + EA
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA- 293
Query: 216 DIIKKGKMCCLFINDLDAGA---GRMGGTTQYTVNNQMVNATLMN 257
+K +FI++LDA A + G + + +Q++ TLM+
Sbjct: 294 ---EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLL--TLMD 333
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GKS+ + V + +S+ +L S GE KL++Q + A ++ K
Sbjct: 56 LYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA----RENKP 111
Query: 224 CCLFINDLDAGAGRMG 239
+FI+ +DA G G
Sbjct: 112 SIIFIDQVDALTGTRG 127
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
VK P + ++G G GK+ V + G +++ E+ S AGE +R+ + EA
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA- 293
Query: 216 DIIKKGKMCCLFINDLDAGA---GRMGGTTQYTVNNQMVNATLMN 257
+K +FI++LDA A + G + + +Q++ TLM+
Sbjct: 294 ---EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLL--TLMD 333
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
VK P + ++G G GK+ V + G +++ E+ S AGE +R+ + EA
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA- 293
Query: 216 DIIKKGKMCCLFINDLDAGA---GRMGGTTQYTVNNQMVNATLMN 257
+K +FI++LDA A + G + + +Q++ TLM+
Sbjct: 294 ---EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLL--TLMD 333
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
VK P + ++G G GK+ V + G +++ E+ S AGE +R+ + EA
Sbjct: 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEA- 293
Query: 216 DIIKKGKMCCLFINDLDAGA---GRMGGTTQYTVNNQMVNATLMN 257
+K +FI++LDA A + G + + +Q++ TLM+
Sbjct: 294 ---EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLL--TLMD 333
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GKS+ + V + +S+ +L S GE KL++Q + A ++ K
Sbjct: 74 LYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA----RENKP 129
Query: 224 CCLFINDLDAGAGRMG 239
+FI+ +DA G G
Sbjct: 130 SIIFIDQVDALTGTRG 145
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GKS+ + V + +S+ +L S GE KL++Q + A ++ K
Sbjct: 89 LYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMA----RENKP 144
Query: 224 CCLFINDLDAGAGRMG 239
+FI+ +DA G G
Sbjct: 145 SIIFIDQVDALTGTRG 160
>pdb|1ZI8|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
Mutant(E36d, C123s, A134s, S208g, A229v, K234r)- 1.4 A
Length = 236
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 101 MESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVV----VHITKNFLNLPNV 156
+E+ YA Y GL YSL L L + ++D+ V V + K +P V
Sbjct: 100 LEAAIRYARHQPYSNGKVGLVGYSLGGALAFLVASKGYVDRAVGYYGVGLEKQLNKVPEV 159
Query: 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 200
K P + + G + +L+ G NP++ E+G++
Sbjct: 160 KHPALFHMGGQDHFVPAPSRQLITEGFGANPLLQVHWYEEAGHS 203
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 24/152 (15%)
Query: 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD 216
K+P + + G G GK+ + + + + +S + G A +R + +A
Sbjct: 43 KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQA-- 100
Query: 217 IIKKGKMCCLFINDLDA-----GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 271
KK C +FI+++DA GAG GG + Q +N L+ M
Sbjct: 101 --KKAAPCIIFIDEIDAVGRQRGAGLGGGHDE---REQTLNQMLVE------------MD 143
Query: 272 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 303
E N + +I N L L+R GR ++
Sbjct: 144 GFEGNEGIIVIAATNRPDVLDPALLRPGRFDR 175
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 77/188 (40%), Gaps = 24/188 (12%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+G G GK+ + + + N I + EL + GE +R+ + +A ++
Sbjct: 54 FYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKA----RQAAP 109
Query: 224 CCLFINDLD--AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 281
C LF ++LD A A ++++N L ++ GM ++ V I
Sbjct: 110 CVLFFDELDSIAKARGGNIGDGGGAADRVINQIL---------TEMDGMSTKK---NVFI 157
Query: 282 IVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGVCSGIFRTDNVPK----EDIVKLV 335
I N + ++R GR+++ + P ++ R+ + R V K E + K+
Sbjct: 158 IGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMT 217
Query: 336 DTFPGQSI 343
+ F G +
Sbjct: 218 NGFSGADL 225
>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
Conformation
Length = 196
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 195
PL++ + GG G GK QC + K G +SAGEL
Sbjct: 3 PLVVFVLGGPGAGKGTQCARIVEKYGYT--HLSAGEL 37
>pdb|2JEO|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1
pdb|2UVQ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1 In
Complex With Adp
Length = 245
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 24/124 (19%)
Query: 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII 218
P ++G+ GG GKS CE + +G N + QR R+ I+
Sbjct: 25 PFLIGVSGGTASGKSTVCEKIMELLGQNE-------------------VEQRQRKVV-IL 64
Query: 219 KKGKMCCLFINDLDAGA--GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 276
+ + + + A A G+ +N +++ TL NI + T V++P Y+ +
Sbjct: 65 SQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKT-VEVP-TYDFVTH 122
Query: 277 PRVP 280
R+P
Sbjct: 123 SRLP 126
>pdb|1Z83|A Chain A, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|B Chain B, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|1Z83|C Chain C, Crystal Structure Of Human Ak1a In Complex With Ap5a
pdb|2C95|A Chain A, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
pdb|2C95|B Chain B, Structure Of Adenylate Kinase 1 In Complex With P1,P4-Di
(Adenosine)tetraphosphate
Length = 196
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 12/69 (17%)
Query: 161 ILGIWGGKGQGKSFQCELVFAKMGINPIM---MSAGELESGNAGEPAKLIRQRYREAADI 217
I+ + GG G GK QCE + K G + + E+ SG+A R ++ ++I
Sbjct: 11 IIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSA---------RGKKLSEI 61
Query: 218 IKKGKMCCL 226
++KG++ L
Sbjct: 62 MEKGQLVPL 70
>pdb|1XRJ|A Chain A, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
pdb|1XRJ|B Chain B, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
Length = 261
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPI 188
PN P ++G+ GG GKS C + +G N +
Sbjct: 15 PNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEV 49
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 13/90 (14%)
Query: 153 LPNVKVPLILGI---------WGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 203
LP+++ L G+ +G G GK+ + V A+ +SA L S GE
Sbjct: 133 LPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEG 192
Query: 204 AKLIRQRYREAADIIKKGKMCCLFINDLDA 233
KL+R + A ++ + +FI+ +D+
Sbjct: 193 EKLVRALFAVAREL----QPSIIFIDQVDS 218
>pdb|3ADK|A Chain A, Refined Structure Of Porcine Cytosolic Adenylate Kinase At
2.1 Angstroms Resolution
Length = 195
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 12/75 (16%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM---MSAGELESGNAGEPAKLIRQRY 211
+K I+ + GG G GK QCE + K G + + E+ SG+A R
Sbjct: 5 KLKKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSA---------RG 55
Query: 212 REAADIIKKGKMCCL 226
+ ++I++KG++ L
Sbjct: 56 KMLSEIMEKGQLVPL 70
>pdb|1UDW|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UDW|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UEI|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEI|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEJ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UEJ|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UFQ|A Chain A, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|B Chain B, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|C Chain C, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|D Chain D, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UJ2|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
pdb|1UJ2|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
Length = 252
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPI 188
PN P ++G+ GG GKS C + +G N +
Sbjct: 17 PNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEV 51
>pdb|3TQC|A Chain A, Structure Of The Pantothenate Kinase (Coaa) From Coxiella
Burnetii
pdb|3TQC|B Chain B, Structure Of The Pantothenate Kinase (Coaa) From Coxiella
Burnetii
Length = 321
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 147 TKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINP------IMMSAGELESGNA 200
T FL P KVP I+GI G GKS ++ A + P ++ + G L S
Sbjct: 80 TYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAK 139
Query: 201 GEPAKLIRQR-YREAADI 217
E L++++ + E+ D+
Sbjct: 140 LEKQGLMKRKGFPESYDM 157
>pdb|2ZR0|A Chain A, Msreca-Q196e Mutant
pdb|2ZR9|A Chain A, Msreca Q196e Datp Form Iv
pdb|2ZRA|A Chain A, Msreca Q196e Atpgs
pdb|2ZRB|A Chain A, Msreca Q196e Form Ii'
Length = 349
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 193 GELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVN 252
GE+ + G A+L+ Q R+ + +FIN+L G M G+ + T + +
Sbjct: 159 GEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALK 218
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,716,442
Number of Sequences: 62578
Number of extensions: 552277
Number of successful extensions: 1198
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 1157
Number of HSP's gapped (non-prelim): 75
length of query: 438
length of database: 14,973,337
effective HSP length: 102
effective length of query: 336
effective length of database: 8,590,381
effective search space: 2886368016
effective search space used: 2886368016
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)