BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013704
(438 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1
Length = 435
Score = 782 bits (2020), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 375/438 (85%), Positives = 407/438 (92%), Gaps = 5/438 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA STVGAVN A PL +NGS +R SLVPS+ F G SLKK ++K + S +FK+V+
Sbjct: 1 MAAAYSTVGAVNRA-PLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKAS--SGNFKIVA 57
Query: 60 -EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
E E++QT +D+W GLAYDISDDQQDITRGKGMVDTLFQAPM+SGTHYAVMSSYDYISQ
Sbjct: 58 QEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQ 117
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
GLRQY+LDN +DG YIAPAFMDK+VVHITKNFL+LPN+K+PLILGIWGGKGQGKSFQCEL
Sbjct: 118 GLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCEL 177
Query: 179 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 238
VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM
Sbjct: 178 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 237
Query: 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 298
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRD
Sbjct: 238 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 297
Query: 299 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 358
GRMEKFYWAPTREDRIGVC GIFRTDNVP+EDIVK+VD FPGQSIDFFGALRARVYDDEV
Sbjct: 298 GRMEKFYWAPTREDRIGVCKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEV 357
Query: 359 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
RKW+SEVG++ IGK+LVNSKEGPPTFEQPKMT+DKLL+YG MLV+EQENVKRVQLADKY+
Sbjct: 358 RKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYM 417
Query: 419 SEAALGDANDDAIKNGSF 436
SEAALGDAN DAIK G+F
Sbjct: 418 SEAALGDANQDAIKRGTF 435
>sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic OS=Larrea tridentata GN=RCA1 PE=1 SV=1
Length = 476
Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/440 (85%), Positives = 407/440 (92%), Gaps = 5/440 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGS-SRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA STVGAVN A PL +NGS +R SLVPS+ F G SLKK ++K + S +FK+V+
Sbjct: 1 MAAAYSTVGAVNRA-PLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKAS--SGNFKIVA 57
Query: 60 -EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQ 118
E E++QT +D+W GLAYDISDDQQDITRGKGMVDTLFQAPM+SGTHYAVMSSYDYISQ
Sbjct: 58 QEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQ 117
Query: 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCEL 178
GLRQY+LDN +DG YIAPAFMDK+VVHITKNFL+LPN+K+PLILGIWGGKGQGKSFQCEL
Sbjct: 118 GLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILGIWGGKGQGKSFQCEL 177
Query: 179 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 238
VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM
Sbjct: 178 VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 237
Query: 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 298
GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRD
Sbjct: 238 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRD 297
Query: 299 GRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 358
GRMEKFYWAPTREDRIGVC GIFRTDNV +DIVKLVDTFPGQSIDFFGALRARVY DEV
Sbjct: 298 GRMEKFYWAPTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEV 357
Query: 359 RKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 418
RKW+SEVG++ IGK+LVNSKEGPP+FEQPKMT+DKLL YG MLVQEQENVKRVQLADKY+
Sbjct: 358 RKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYM 417
Query: 419 SEAALGDANDDAIKNGSFYG 438
SEAALGDAN+DAIK G+FYG
Sbjct: 418 SEAALGDANNDAIKRGTFYG 437
>sp|Q40281|RCA_MALDO Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Malus domestica GN=RCA PE=2 SV=1
Length = 437
Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/438 (82%), Positives = 398/438 (90%), Gaps = 1/438 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MA VST+G+VN A P +NGSS + VPSS FLG SLKKV+S+ + ++ S S ++V+
Sbjct: 1 MATAVSTIGSVNRAPP-NLNGSSSSASVPSSTFLGSSLKKVNSRFTNSKVSSGSLRIVAS 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DE+KQT +DRW GLA+D SDDQQDITRGKG VD+LFQAP SGTH+A+MSSY+YIS GL
Sbjct: 60 VDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGL 119
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
RQY+ DN +DG YIAPAFMDK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQCELVF
Sbjct: 120 RQYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLILGIWGGKGQGKSFQCELVF 179
Query: 181 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 240
AKM I+PIMMSAGELESGNAGEPAKLIRQRYREAADII+KGKMC LFINDLDAGAGR+GG
Sbjct: 180 AKMRISPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCALFINDLDAGAGRLGG 239
Query: 241 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 300
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 240 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 299
Query: 301 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360
MEKFYWAPTREDRIGVC GIFR+DNV KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 300 MEKFYWAPTREDRIGVCIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 359
Query: 361 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 420
WI+ VG++ IGK+LVNSKEGPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLADKYLSE
Sbjct: 360 WITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSE 419
Query: 421 AALGDANDDAIKNGSFYG 438
AALGDAN DA+ G+FYG
Sbjct: 420 AALGDANSDAMNTGTFYG 437
>sp|O98997|RCA_VIGRR Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Vigna radiata var. radiata GN=RCA PE=2 SV=2
Length = 439
Score = 748 bits (1931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/441 (81%), Positives = 399/441 (90%), Gaps = 7/441 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKK-VSSKVSQQRILSKSFKVVS 59
MAA VSTVGAVN A+ L +NGS + P+S F G SLKK V+S+V ++ + SFK+V+
Sbjct: 1 MAASVSTVGAVNRAI-LNLNGSGAGASAPTSAFFGTSLKKAVASRVPNSKVTNGSFKIVA 59
Query: 60 ---EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E +E +QT++DRW GLAYDISDDQQDITRGKGMVD LFQAPM++GTHYAVMSSY+Y+
Sbjct: 60 AEKEIEESQQTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYL 119
Query: 117 SQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 176
S GLRQ LDN DG YIAPAF+DK+VVHITKNF+ LPN+KVPLILGIWGGKGQGKSFQC
Sbjct: 120 STGLRQ--LDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILGIWGGKGQGKSFQC 177
Query: 177 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236
ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC LFINDLDAGAG
Sbjct: 178 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLDAGAG 237
Query: 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 296
R+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPIIVTGNDFSTLYAPLI
Sbjct: 238 RLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLI 297
Query: 297 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 356
RDGRMEKFYWAPTR+DR+GVC GIFRTD VP+EDI KLVDTFPGQSIDFFGALRARVYDD
Sbjct: 298 RDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDD 357
Query: 357 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 416
EVRKWIS VG++ GK+LVNSKEGPPTF+QPKM+LDKLL+YG MLVQEQENVKRVQLADK
Sbjct: 358 EVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADK 417
Query: 417 YLSEAALGDANDDAIKNGSFY 437
YL+EAALG+AN+DAIK+GSF+
Sbjct: 418 YLNEAALGNANEDAIKSGSFF 438
>sp|Q40460|RCA1_TOBAC Ribulose bisphosphate carboxylase/oxygenase activase 1,
chloroplastic OS=Nicotiana tabacum PE=1 SV=1
Length = 442
Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/441 (80%), Positives = 391/441 (88%), Gaps = 5/441 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSK-VSQQRILSKSFKVVS 59
MA VST+GAVN PL +N S + VPS+ F GK+LKKV K VS ++ +KS ++V+
Sbjct: 1 MATSVSTIGAVNKT-PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRIVA 59
Query: 60 E---YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E D +KQT DRW GL D SDDQQDITRGKGMVD+LFQAP +GTH+AV+ SY+Y+
Sbjct: 60 EQIDVDPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYV 119
Query: 117 SQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 176
SQGLRQY+LDN LDG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQC
Sbjct: 120 SQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 179
Query: 177 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236
ELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCLFINDLDAGAG
Sbjct: 180 ELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 239
Query: 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 296
RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLI
Sbjct: 240 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLI 299
Query: 297 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 356
RDGRMEKFYWAPTREDRIGVC+GIFRTDNVP ED+VK+VD FPGQSIDFFGALRARVYDD
Sbjct: 300 RDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDD 359
Query: 357 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 416
EVRKW+S GIE+IG +L+NS +GPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLADK
Sbjct: 360 EVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADK 419
Query: 417 YLSEAALGDANDDAIKNGSFY 437
YL EAALGDAN DAI NGSF+
Sbjct: 420 YLKEAALGDANADAINNGSFF 440
>sp|P10896|RCA_ARATH Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Arabidopsis thaliana GN=RCA PE=1 SV=2
Length = 474
Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/439 (79%), Positives = 387/439 (88%), Gaps = 3/439 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSL-VPSSVFLGKSLKKVSSKVSQQRILSKSFKVVS 59
MAA VSTVGA+N A PL +NGS ++ P+S FLGK + VS + + SFKV++
Sbjct: 1 MAAAVSTVGAINRA-PLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
E+KQT DRW GLAYD SDDQQDITRGKGMVD++FQAPM +GTH+AV+SSY+Y+SQG
Sbjct: 60 -VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQG 118
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
LRQY+LDN +DG YIAPAFMDK+VVHITKNFL LPN+KVPLILGIWGGKGQGKSFQCELV
Sbjct: 119 LRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQCELV 178
Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAD+IKKGKMCCLFINDLDAGAGRMG
Sbjct: 179 MAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIKKGKMCCLFINDLDAGAGRMG 238
Query: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 299
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EEN RVPII TGNDFSTLYAPLIRDG
Sbjct: 239 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDG 298
Query: 300 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 359
RMEKFYWAPTREDRIGVC GIFRTD + EDIV LVD FPGQSIDFFGALRARVYDDEVR
Sbjct: 299 RMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVR 358
Query: 360 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 419
K++ +G+E+IGKRLVNS+EGPP FEQP+MT +KL+EYG MLV EQENVKRVQLA+ YLS
Sbjct: 359 KFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLS 418
Query: 420 EAALGDANDDAIKNGSFYG 438
+AALGDAN DAI G+FYG
Sbjct: 419 QAALGDANADAIGRGTFYG 437
>sp|Q40565|RCA2_TOBAC Ribulose bisphosphate carboxylase/oxygenase activase 2,
chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1
Length = 439
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/440 (78%), Positives = 386/440 (87%), Gaps = 5/440 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSK-VSQQRILSKSFKVVS 59
MA VST+GA N A PL +N S + VPS+ F GK+LKKV K VS ++ ++S ++ +
Sbjct: 1 MATSVSTIGAANKA-PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNRSLRIAA 59
Query: 60 E---YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E D +KQT DRW GL D SDDQQDI RGKGMVD+LFQAP +GTH+AV+ SY+Y+
Sbjct: 60 EEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYV 119
Query: 117 SQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 176
SQGLRQY++DNTLDG YIAP+FMDK+VVHITKNFL LPN+KVPLILG+WGGKGQGKSFQC
Sbjct: 120 SQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILGVWGGKGQGKSFQC 179
Query: 177 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236
ELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG +CCLFINDLDAGAG
Sbjct: 180 ELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNICCLFINDLDAGAG 239
Query: 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 296
RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLI
Sbjct: 240 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLI 299
Query: 297 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 356
RDGRMEKFYWAPTREDRIGVC GIFRTDNVP+E ++K+VDTFPGQSIDFFGALRARVYDD
Sbjct: 300 RDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDD 359
Query: 357 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 416
EVRKW+S GIE IG +L+NS +GPPTFEQPKMT++KLLEYG MLVQEQENVKRVQLA+
Sbjct: 360 EVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAET 419
Query: 417 YLSEAALGDANDDAIKNGSF 436
YL EAALGDAN DAI G+F
Sbjct: 420 YLKEAALGDANADAINTGNF 439
>sp|O64981|RCA_PHAVU Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1
Length = 441
Score = 726 bits (1873), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/441 (79%), Positives = 395/441 (89%), Gaps = 5/441 (1%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKV-SSKVSQQRILSKSFKVVS 59
MAA +STVGAVN L L +NGS + PSS F G SLKKV SS+V ++ S SFK+V+
Sbjct: 1 MAASLSTVGAVNRTL-LNLNGSGGGASGPSSAFFGTSLKKVISSRVPNSKLTSGSFKIVA 59
Query: 60 ---EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYI 116
E +E +QT DRW GLAYD+SDDQQDITRGKG+VD+LFQAPM++GTHYAV+SS+ Y+
Sbjct: 60 ADKEIEETQQTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYL 119
Query: 117 SQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQC 176
S GLRQY+ DN DG YIAPAF+DK+VVHI KNF+ LPN+KVPLILG+WGGKGQGKSFQC
Sbjct: 120 SAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILGVWGGKGQGKSFQC 179
Query: 177 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236
ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA+D+IKKGKMC LFINDLDAGAG
Sbjct: 180 ELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMCVLFINDLDAGAG 239
Query: 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 296
R+GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+E+N RVPIIVTGNDFSTLYAPLI
Sbjct: 240 RLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLI 299
Query: 297 RDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 356
RDGRMEKFYWAPTREDRIGVC GIFRTD VP++DIV+LVD PGQSIDFFGALRARVYDD
Sbjct: 300 RDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDD 359
Query: 357 EVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 416
EVRKWIS VG++ +GK+LVNSKEGPPTF+QPKMTLDKLL Y MLVQEQENVKRVQLAD+
Sbjct: 360 EVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQ 419
Query: 417 YLSEAALGDANDDAIKNGSFY 437
YL+EAALG+AN+DAIK+GSF+
Sbjct: 420 YLNEAALGNANEDAIKSGSFF 440
>sp|P93431|RCA_ORYSJ Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2
Length = 466
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/410 (83%), Positives = 374/410 (91%), Gaps = 4/410 (0%)
Query: 33 FLGKSLKK-VSSKVSQQRILSK--SFKVVS-EYDEEKQTSQDRWAGLAYDISDDQQDITR 88
FLGK LKK V+S V+ S FKV++ E DE KQT QDRW GLAYDISDDQQDITR
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSNINRFKVMAKELDEGKQTDQDRWKGLAYDISDDQQDITR 78
Query: 89 GKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITK 148
GKG VD+LFQAP GTH AV+SSY+Y+SQGLR Y DNT+ G YIAPAFMDK+VVHI+K
Sbjct: 79 GKGFVDSLFQAPTGDGTHEAVLSSYEYLSQGLRTYDFDNTMGGFYIAPAFMDKLVVHISK 138
Query: 149 NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 208
NF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR
Sbjct: 139 NFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIR 198
Query: 209 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 268
QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP
Sbjct: 199 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 258
Query: 269 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK 328
GMYN+E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVC GIFRTDNVP
Sbjct: 259 GMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDNVPD 318
Query: 329 EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPK 388
EDIVK+VD+FPGQSIDFFGALRARVYDDEVRKW+S+ G+E IGKRLVNS+EGPP FEQPK
Sbjct: 319 EDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPK 378
Query: 389 MTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
MT++KL+EYG MLV+EQENVKRVQLA++YLSEAALGDAN DA+K GSFYG
Sbjct: 379 MTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 428
>sp|O49074|RCA_SOLPN Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Solanum pennellii PE=2 SV=1
Length = 459
Score = 718 bits (1854), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/435 (78%), Positives = 385/435 (88%), Gaps = 4/435 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSK-VSQQRILSKSFKVVS 59
MAA VST+GA + A PL +N S + VPS+ F GKSLKKV +K VS ++ +++ +VV+
Sbjct: 1 MAASVSTIGAASKA-PLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVSSPKVSNRNLRVVA 59
Query: 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQG 119
+ E +T +DRW GL + SDDQQDI RGKG+VD+LFQAP +GTH+A+M+SY+Y+SQ
Sbjct: 60 Q--EVDETKEDRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQA 117
Query: 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELV 179
L+ Y LDN LDG YIAPAFMDK+VVHITKNFL LPN+KVPLILG+WGGKGQGKSFQCELV
Sbjct: 118 LKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGVWGGKGQGKSFQCELV 177
Query: 180 FAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239
F KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+II+KG MCCLFINDLDAGAGRMG
Sbjct: 178 FRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMG 237
Query: 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 299
GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN++EN RVPIIVTGNDFSTLYAPLIRDG
Sbjct: 238 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDG 297
Query: 300 RMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 359
RMEKFYWAPTREDRIGVC GIFRTDNVP+E +VK+VD+FPGQSIDFFGALRARVYDDEVR
Sbjct: 298 RMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVR 357
Query: 360 KWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 419
KW+S GIE IG++L+NS++GPPTFEQPKMTL+KLLEYG MLVQEQENVKRVQLA+ YL
Sbjct: 358 KWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLK 417
Query: 420 EAALGDANDDAIKNG 434
EAALGDAN DAI G
Sbjct: 418 EAALGDANADAINTG 432
>sp|Q42450|RCAB_HORVU Ribulose bisphosphate carboxylase/oxygenase activase B,
chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1
Length = 425
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/411 (81%), Positives = 371/411 (90%), Gaps = 6/411 (1%)
Query: 31 SVFLGKSLKKVSSKVSQQRILSKSFKVVS---EYDEEKQTSQDRWAGLAYDISDDQQDIT 87
++FLGK +K ++ S+ +V++ E D+ KQT DRW GLAYDISDDQQDIT
Sbjct: 17 TIFLGKKVKNYYH--GGNKMKSRVVRVMAAKKELDQGKQTDADRWKGLAYDISDDQQDIT 74
Query: 88 RGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHIT 147
RGKG+VD+LFQAPM GTH A++SSY+YISQGLR+Y DNT+DGLYIAPAFMDK++VH+
Sbjct: 75 RGKGIVDSLFQAPMGDGTHEAILSSYEYISQGLRKYDFDNTMDGLYIAPAFMDKLIVHLA 134
Query: 148 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 207
KNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN GEPAKLI
Sbjct: 135 KNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN-GEPAKLI 193
Query: 208 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 267
RQRYREAADII KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQL
Sbjct: 194 RQRYREAADIINKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQL 253
Query: 268 PGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVP 327
PGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFRTDNVP
Sbjct: 254 PGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVP 313
Query: 328 KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQP 387
E +V+LVDTFPGQSIDFFGALRARVYDDEVRKW+ E+G+E I KRLVNS+EGPPTF+QP
Sbjct: 314 DEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQP 373
Query: 388 KMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
KMT++KL+EYG MLVQEQENVKRVQLADKYLSEAALG ANDDA+K G+FYG
Sbjct: 374 KMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 424
>sp|Q01587|RCA_CUCSA Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Cucumis sativus PE=2 SV=1
Length = 413
Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/413 (80%), Positives = 369/413 (89%), Gaps = 4/413 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MAA VST+GAVN +N S+ LVP+S FLG LK VSS+ + ++++ +FK+V+E
Sbjct: 1 MAATVSTIGAVNRT---TLNNSNYGGLVPNSAFLGSRLK-VSSRFTTSKMVTGNFKIVAE 56
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
DEEKQT +D+W GLA+D SDDQQDITRGKG+ D LFQAPM +GTH AV+SSY+YIS GL
Sbjct: 57 QDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGL 116
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
R YS DN +DG YIAPAFMDK+ VHI KNFL LPN+KVPLILG+WGGKGQGKSFQCELVF
Sbjct: 117 RDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILGVWGGKGQGKSFQCELVF 176
Query: 181 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 240
AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR+GG
Sbjct: 177 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRLGG 236
Query: 241 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 300
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+EENPRVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 237 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGR 296
Query: 301 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360
M+KFYWAPTREDRIG+C+GIFRTD VP EDIVKLVDTFPGQSIDFFGALRARVYDDEVRK
Sbjct: 297 MDKFYWAPTREDRIGICTGIFRTDGVPFEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 356
Query: 361 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQL 413
W VG+ERIG+ LVNSKE PPTF+QPKMT++KLLEYG MLV EQENVKRV+L
Sbjct: 357 WAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409
>sp|Q9ZT00|RCA_MAIZE Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Zea mays GN=RCA1 PE=2 SV=3
Length = 433
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/414 (80%), Positives = 368/414 (88%), Gaps = 7/414 (1%)
Query: 31 SVFLGKSLKK--VSSKVSQQRILSKS---FKVVS--EYDEEKQTSQDRWAGLAYDISDDQ 83
S FLGK L K VS+ V+ S S FK ++ E DE KQT +DRW GLAYDISDDQ
Sbjct: 19 SSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYDISDDQ 78
Query: 84 QDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVV 143
QDITRGKG+VD LFQAPM GTH AV+SSYDYISQG + Y+ DN +DG YIA FMDK+V
Sbjct: 79 QDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKSYNFDNMMDGFYIAKGFMDKLV 138
Query: 144 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 203
VH++KNF+ LPN+KVPLILGIWGGKGQGKSFQCELVFAKMGI PIMMSAGELESGNAGEP
Sbjct: 139 VHLSKNFMTLPNIKVPLILGIWGGKGQGKSFQCELVFAKMGITPIMMSAGELESGNAGEP 198
Query: 204 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 263
AKLIRQRYREA+D+IKKGKM CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT
Sbjct: 199 AKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT 258
Query: 264 NVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRT 323
NVQLPGMYN+E+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFRT
Sbjct: 259 NVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRT 318
Query: 324 DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPT 383
D V +E +V+LVDTFPGQSIDFFGALRARVYDDEVR+W+SE G+E I ++LVNSKEGPPT
Sbjct: 319 DGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGVENIARKLVNSKEGPPT 378
Query: 384 FEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFY 437
FEQPK+T++KLLEYG MLV EQENVKRVQLADKYL+EAALG+AN+DA+K GSF+
Sbjct: 379 FEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432
>sp|Q40073|RCAA_HORVU Ribulose bisphosphate carboxylase/oxygenase activase A,
chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1
Length = 464
Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/409 (80%), Positives = 368/409 (89%), Gaps = 3/409 (0%)
Query: 33 FLGKSLKK-VSSKVSQQRILSKS--FKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRG 89
FLGK LKK V+S V+ SK+ F V++ + +++ + D+W GLAYDISDDQQDITRG
Sbjct: 19 FLGKKLKKQVTSAVNYHGKSSKANRFTVMAAENIDEKRNTDKWKGLAYDISDDQQDITRG 78
Query: 90 KGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKN 149
KG+VD+LFQAP GTH AV+SSY+Y+SQGLR+Y DNT+ G YIAPAFMDK+VVH++KN
Sbjct: 79 KGIVDSLFQAPTGHGTHEAVLSSYEYVSQGLRKYDFDNTMGGFYIAPAFMDKLVVHLSKN 138
Query: 150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 209
F+ LPN+K+PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ
Sbjct: 139 FMTLPNIKIPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ 198
Query: 210 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 269
RYREAAD+IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD PTNVQLPG
Sbjct: 199 RYREAADMIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPG 258
Query: 270 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKE 329
MYN+ ENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVC GIF+TDNV E
Sbjct: 259 MYNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDE 318
Query: 330 DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 389
+VK+VDTFPGQSIDFFGALRARVYDDEVRKW+ GIE IGKRLVNS++GP TFEQPKM
Sbjct: 319 SVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKM 378
Query: 390 TLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDANDDAIKNGSFYG 438
T++KLLEYG MLVQEQ+NVKRVQLAD Y+S+AALGDAN DA+K GSFYG
Sbjct: 379 TVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427
>sp|P10871|RCA_SPIOL Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Spinacia oleracea PE=1 SV=2
Length = 472
Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/438 (75%), Positives = 375/438 (85%), Gaps = 3/438 (0%)
Query: 1 MAAVVSTVGAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSE 60
MA VSTVGA A PL +NGSS + VP+S FLG SLKK ++ + S V +
Sbjct: 1 MATAVSTVGAATRA-PLNLNGSSAGASVPTSGFLGSSLKKHTNVRFPSSSRTTSMTVKAA 59
Query: 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGL 120
+EEK T D+WA LA D SDDQ DI RGKGMVD+LFQAP ++GTH + SS++Y SQGL
Sbjct: 60 ENEEKNT--DKWAHLAKDFSDDQLDIRRGKGMVDSLFQAPADAGTHVPIQSSFEYESQGL 117
Query: 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVF 180
R+Y +DN L YIAPAFMDK+VVHITKNFLNLPN+K+PLILG+WGGKGQGKSFQCELVF
Sbjct: 118 RKYDIDNMLGDFYIAPAFMDKLVVHITKNFLNLPNIKIPLILGVWGGKGQGKSFQCELVF 177
Query: 181 AKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG 240
AK+GINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC LFINDL+ GAGRMGG
Sbjct: 178 AKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGG 237
Query: 241 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 300
TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN+++N RVPIIVTGNDFSTLYAPLIRDGR
Sbjct: 238 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGR 297
Query: 301 MEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360
MEKFYWAPTREDRIGVC+GIF+TD VP E +VKLVD FPGQSIDFFGALRARVY DEVRK
Sbjct: 298 MEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRK 357
Query: 361 WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSE 420
W++ VG++ +GK+LVNSK+GPP FEQP+MTL KL+EYG MLVQEQENVKRVQLAD+Y+S
Sbjct: 358 WVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSS 417
Query: 421 AALGDANDDAIKNGSFYG 438
AALGDAN DAI G+F+G
Sbjct: 418 AALGDANKDAIDRGTFFG 435
>sp|P23489|RCA_CHLRE Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
OS=Chlamydomonas reinhardtii PE=2 SV=1
Length = 408
Score = 524 bits (1350), Expect = e-148, Method: Compositional matrix adjust.
Identities = 255/384 (66%), Positives = 307/384 (79%), Gaps = 10/384 (2%)
Query: 43 SKVSQQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPME 102
++V+ + + +VV+ KQ + R D SDDQQDITRG+ MVD LFQ
Sbjct: 18 ARVATRSVRRAQLQVVAP--SRKQMGRWRSIDAGVDASDDQQDITRGREMVDDLFQGGFG 75
Query: 103 SG-THYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLI 161
+G TH AV+SS +Y+SQ + S +N DG YI+PAF+DK+ +HI KNF++LP +KVPLI
Sbjct: 76 AGGTHNAVLSSQEYLSQS--RASFNNIEDGFYISPAFLDKMTIHIAKNFMDLPKIKVPLI 133
Query: 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 221
LGIWGGKGQGK+FQC L + K+GI PI+MSAGELESGNAGEPAKLIR RYREA+DIIKKG
Sbjct: 134 LGIWGGKGQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKG 193
Query: 222 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 281
+MC LFINDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPTNVQLPG+Y EE PRVPI
Sbjct: 194 RMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPI 253
Query: 282 IVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQ 341
+ TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV + ++ LVDTFPGQ
Sbjct: 254 VCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQ 313
Query: 342 SIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLD--KLLEYGR 399
SIDFFGALRARVYDD VR+WI++ G+++IG++LVN+++ PK+++D L++YG+
Sbjct: 314 SIDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQ---KVAMPKVSMDLNVLIKYGK 370
Query: 400 MLVQEQENVKRVQLADKYLSEAAL 423
LV EQENVKRVQLAD YLS A L
Sbjct: 371 SLVDEQENVKRVQLADAYLSGAEL 394
>sp|Q06721|RCA_ANASC Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena
sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1
Length = 415
Score = 393 bits (1009), Expect = e-108, Method: Compositional matrix adjust.
Identities = 182/286 (63%), Positives = 225/286 (78%), Gaps = 1/286 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YIAP F+DK+ VHITKNFLNLP V+VPLILGI G KG+GK+FQCEL F KMG+ ++S
Sbjct: 4 YIAPRFLDKLAVHITKNFLNLPGVRVPLILGIHGRKGEGKTFQCELAFEKMGVEVTLISG 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPHRD 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
+++G+ GIF D + + D+ KLVD+FP QSIDFF ALR+R+YD+++R +I +VG E +
Sbjct: 184 EKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVS 243
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
R+VNS EGPP F++P TL L+E +V EQ+ ++ QL D+Y
Sbjct: 244 LRVVNSLEGPPAFKKPDFTLSHLIESANFMVAEQKRIETSQLVDEY 289
>sp|P58555|RCA_NOSS1 Ribulose bisphosphate carboxylase/oxygenase activase OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=rca PE=3 SV=1
Length = 414
Score = 391 bits (1004), Expect = e-108, Method: Compositional matrix adjust.
Identities = 184/286 (64%), Positives = 225/286 (78%), Gaps = 1/286 (0%)
Query: 133 YIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192
YIAP F+DK+ VHITKNFLN+P V+VPLILGI G KG+GK+FQCEL F KMGI ++S
Sbjct: 4 YIAPRFLDKLAVHITKNFLNIPGVRVPLILGIHGRKGEGKTFQCELAFEKMGIEVTLISG 63
Query: 193 GELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251
GELES +AG+PA+LIR RYRE A++IK +GKMC L INDLDAGAGR TQYTVN Q+V
Sbjct: 64 GELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLV 123
Query: 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRE 311
NATLMNIADNPT+VQLPG Y+ RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+
Sbjct: 124 NATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRD 183
Query: 312 DRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG 371
D++G+ GIF D + + +I +LVDTFP QSIDFF ALR+R+YD ++R +I +VG ERI
Sbjct: 184 DKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFERIS 243
Query: 372 KRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKY 417
R+VNS E PP F++P +L L+E G +++ EQ+ V QL D+Y
Sbjct: 244 LRVVNSLEAPPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEY 289
>sp|P85086|RCA_ARAHY Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
(Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1
Length = 140
Score = 203 bits (516), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 135/277 (48%), Positives = 138/277 (49%), Gaps = 137/277 (49%)
Query: 74 GLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLY 133
GLAYDISDDQQDITRG MVD+LFQAPM GTHYAVMSSY+YISQGLR
Sbjct: 1 GLAYDISDDQQDITRG--MVDSLFQAPMNDGTHYAVMSSYEYISQGLR------------ 46
Query: 134 IAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 193
VPLILGIWGGK MGINPIMMSAG
Sbjct: 47 ------------------------VPLILGIWGGK--------------MGINPIMMSAG 68
Query: 194 ELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 253
ELESGNAGEPA KMCCLFINDLDAGAG
Sbjct: 69 ELESGNAGEPA-----------------KMCCLFINDLDAGAG----------------- 94
Query: 254 TLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDR 313
RVPIIVTGNDFSTLYAPLI R
Sbjct: 95 ------------------------RVPIIVTGNDFSTLYAPLI----------------R 114
Query: 314 IGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALR 350
IGVC+GIFR LVDTFPGQSIDFFGALR
Sbjct: 115 IGVCTGIFR-----------LVDTFPGQSIDFFGALR 140
>sp|P85111|RCA_VITSX Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
(Fragments) OS=Vitis sp. PE=1 SV=1
Length = 62
Score = 78.6 bits (192), Expect = 9e-14, Method: Composition-based stats.
Identities = 40/61 (65%), Positives = 42/61 (68%), Gaps = 17/61 (27%)
Query: 182 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGT 241
+MGINPIMMSAGELESGNAGEPA KMCCLFINDLDAGAGR+G
Sbjct: 15 RMGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAGRIGVC 57
Query: 242 T 242
T
Sbjct: 58 T 58
Score = 35.4 bits (80), Expect = 0.78, Method: Composition-based stats.
Identities = 15/15 (100%), Positives = 15/15 (100%)
Query: 74 GLAYDISDDQQDITR 88
GLAYDISDDQQDITR
Sbjct: 1 GLAYDISDDQQDITR 15
>sp|O28972|Y1297_ARCFU Cell division cycle protein 48 homolog AF_1297 OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=AF_1297 PE=3 SV=1
Length = 733
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 89/196 (45%), Gaps = 22/196 (11%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 214
N+K P + ++G G GK+ + V + N I + EL S GE K +R+ +R+A
Sbjct: 485 NIKPPRGILLFGPPGTGKTLLAKAVANESNANFISVKGPELLSKWVGESEKHVREMFRKA 544
Query: 215 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 274
+ C +F +++D+ A R GG V ++V+ L +L G+ E
Sbjct: 545 RQVAP----CVIFFDEIDSLAPRRGGIGDSHVTERVVSQLL---------TELDGL---E 588
Query: 275 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFR----TDNVPK 328
E V +I N + L+R GR+E+ + P ++ R+ + R D+V
Sbjct: 589 ELKDVVVIAATNRPDMIDPALLRPGRLERHIYIPPPDKKARVEIFKIHLRGKPLADDVNI 648
Query: 329 EDIVKLVDTFPGQSID 344
E++ + + + G I+
Sbjct: 649 EELAEKTEGYSGADIE 664
>sp|Q58556|Y1156_METJA Cell division cycle protein 48 homolog MJ1156 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1156 PE=3 SV=1
Length = 903
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 18/159 (11%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V+ P + ++G G GK+ + V + G N I + E+ S GE K IR+ +R+A
Sbjct: 483 VRPPKGVLLFGPPGTGKTLLAKAVANESGANFISVKGPEIFSKWVGESEKAIREIFRKA- 541
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ C +F +++DA A + G V +++VN L +L GM E
Sbjct: 542 ---RQSAPCIIFFDEIDAIAPKRGRDLSSAVTDKVVNQLL---------TELDGM----E 585
Query: 276 NPRVPIIVTGNDFSTLYAP-LIRDGRMEKFYWAPTREDR 313
P+ +++ + + P L+R GR+++ P +++
Sbjct: 586 EPKDVVVIAATNRPDIIDPALLRPGRLDRVILVPVPDEK 624
>sp|P84562|RCA_POPEU Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic
(Fragments) OS=Populus euphratica PE=1 SV=1
Length = 32
Score = 53.1 bits (126), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/60 (48%), Positives = 31/60 (51%), Gaps = 28/60 (46%)
Query: 334 LVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDK 393
LVDTFPGQSIDFFGALR EGPPTFEQP MT++K
Sbjct: 1 LVDTFPGQSIDFFGALR----------------------------EGPPTFEQPAMTIEK 32
>sp|P62335|PRS10_SPETR 26S protease regulatory subunit 10B OS=Spermophilus
tridecemlineatus GN=PSMC6 PE=2 SV=1
Length = 389
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 338 FPGQSI 343
F G +
Sbjct: 338 FNGADL 343
>sp|P62334|PRS10_MOUSE 26S protease regulatory subunit 10B OS=Mus musculus GN=Psmc6 PE=1
SV=1
Length = 389
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 338 FPGQSI 343
F G +
Sbjct: 338 FNGADL 343
>sp|P62333|PRS10_HUMAN 26S protease regulatory subunit 10B OS=Homo sapiens GN=PSMC6 PE=1
SV=1
Length = 389
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 338 FPGQSI 343
F G +
Sbjct: 338 FNGADL 343
>sp|Q9SEI3|PS10A_ARATH 26S protease regulatory subunit 10B homolog A OS=Arabidopsis
thaliana GN=RPT4A PE=2 SV=1
Length = 399
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 228
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ + C +F++++DA GR ++ T ++ + TLM + + QL G N
Sbjct: 229 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGFDNL-- 276
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGV-CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P +R D + + +GI + + E
Sbjct: 277 -GKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYE 335
Query: 330 DIVKLVDTFPGQSI 343
IVKL + F G +
Sbjct: 336 AIVKLAEGFNGADL 349
>sp|Q2KIW6|PRS10_BOVIN 26S protease regulatory subunit 10B OS=Bos taurus GN=PSMC6 PE=2
SV=1
Length = 389
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 86/186 (46%), Gaps = 20/186 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A+LIR+ + A D +
Sbjct: 172 LYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARD----HQP 227
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + Q+ G RV +I+
Sbjct: 228 CIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGFDTLH---RVKMIM 277
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + I + + E IVKL D
Sbjct: 278 ATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDG 337
Query: 338 FPGQSI 343
F G +
Sbjct: 338 FNGADL 343
>sp|P53549|PRS10_YEAST 26S protease subunit RPT4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPT4 PE=1 SV=4
Length = 437
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 90/194 (46%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + V A +G N I A + GE A++IR+ + A
Sbjct: 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYA- 270
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + Q+ G N +
Sbjct: 271 ---KEHEPCIIFMDEVDAIGGRR--FSEGTSADREIQRTLMELL-----TQMDGFDNLGQ 320
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
II+ N TL L+R GR+++ P + R+ + + + +T E
Sbjct: 321 ---TKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFE 377
Query: 330 DIVKLVDTFPGQSI 343
VK+ D F G I
Sbjct: 378 AAVKMSDGFNGADI 391
>sp|Q9MAK9|PS10B_ARATH 26S protease regulatory subunit S10B homolog B OS=Arabidopsis
thaliana GN=RPT4B PE=2 SV=1
Length = 399
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 93/194 (47%), Gaps = 20/194 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A+LIR+ + A
Sbjct: 170 IKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYA- 228
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ + C +F++++DA GR ++ T ++ + TLM + + QL G ++
Sbjct: 229 ---REHQPCIIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DQ 275
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKE 329
+V +I+ N L L+R GR+++ P + R+ + SGI + + E
Sbjct: 276 LGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYE 335
Query: 330 DIVKLVDTFPGQSI 343
IVKL + F G +
Sbjct: 336 AIVKLGEGFNGADL 349
>sp|O74445|PRS10_SCHPO Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpt4 PE=3 SV=2
Length = 388
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%), Gaps = 14/153 (9%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ V A +G+N + + + + GE A++IR+ + A
Sbjct: 163 IKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYA- 221
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K+ + C +F++++DA GR ++ T ++ + TLM + + G
Sbjct: 222 ---KEHEPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLNQMDGFDYLG------ 270
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
+ II+ N TL L+R GR+++ P
Sbjct: 271 --QTKIIMATNRPDTLDPALLRPGRLDRKIEIP 301
>sp|Q9ZPR1|CD48B_ARATH Cell division control protein 48 homolog B OS=Arabidopsis thaliana
GN=CDC48B PE=2 SV=1
Length = 603
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 13/163 (7%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P L ++G G GK+ V + + I++S + +AGE K++R+ + EA+
Sbjct: 53 LKWPRGLLLYGPPGTGKTSLVRAVVQECDAHLIVLSPHSVHRAHAGESEKVLREAFAEAS 112
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
K +FI+++D R + V TLM+ ++ P++
Sbjct: 113 SHAVSDKPSVIFIDEIDVLCPRRDARREQDVRIASQLFTLMD-SNKPSS----------S 161
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKF--YWAPTREDRIGV 316
PRV ++ + N + L R GR + P EDR+ +
Sbjct: 162 APRVVVVASTNRVDAIDPALRRAGRFDALVEVSTPNEEDRLKI 204
>sp|Q9HRW6|PAN1_HALSA Proteasome-activating nucleotidase 1 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=pan1 PE=3
SV=2
Length = 407
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 16/159 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+ G G GK+ + V ++ + I M+ EL GE AKL+R ++ A D +
Sbjct: 188 LHGPPGTGKTLMAKAVASQTDASFIKMAGSELVHKFIGEGAKLVRDLFQVARD----HEP 243
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 244 AVVFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDERGDIRIIA 293
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFR 322
N F L ++R GR ++ P +G IFR
Sbjct: 294 ATNRFDMLDRAILRPGRFDRLIEVP--HPNVGGREKIFR 330
>sp|D4GUJ7|PAN1_HALVD Proteasome-activating nucleotidase 1 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=pan1 PE=2 SV=2
Length = 406
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + + I M+ EL GE AKL+R + ++ ++ +
Sbjct: 189 LYGPPGTGKTMLAKAVANQTNASFIKMAGSELVHKFIGEGAKLVRDLF----EVARENEP 244
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M +E + II
Sbjct: 245 AVIFIDEIDAIASKR--TDSKTSGDAEVQRTMMQL--------LAEMDGFDERGNIRIIA 294
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 295 ATNRFDMLDPAILRPGRFDRLIEVP 319
>sp|O17071|PRS10_CAEEL Probable 26S protease regulatory subunit 10B OS=Caenorhabditis
elegans GN=rpt-4 PE=1 SV=2
Length = 406
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 99/218 (45%), Gaps = 29/218 (13%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ V +++ N + + + + GE A++IR+ + A D +
Sbjct: 189 LFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARD----HQP 244
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
C +F++++DA GR ++ T ++ + TLM + + QL G + +V +I+
Sbjct: 245 CIVFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QLDGF---DSLGKVKVIM 294
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGV----CSGIFRTDNVPKEDIVKLVDT 337
N TL L+R GR+++ P + R+ + + I + + E +VKL D
Sbjct: 295 ATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDG 354
Query: 338 FPGQSID-------FFG--ALRARVYDDEVRKWISEVG 366
F + F A R V D++ K + +VG
Sbjct: 355 FSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKVG 392
>sp|A7I8B8|PAN_METB6 Proteasome-activating nucleotidase OS=Methanoregula boonei (strain
6A8) GN=pan PE=3 SV=1
Length = 436
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 71/163 (43%), Gaps = 18/163 (11%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + + + + EL GE A+L+R+ + D+ KK
Sbjct: 217 LYGPPGTGKTLLAKAVAHETNAHFMRVVGSELVQKYIGEGARLVRELF----DLAKKKAP 272
Query: 224 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282
+FI+++DA GA R T T ++ V TLM + L GM E V II
Sbjct: 273 TIIFIDEIDAVGASR---TEANTSGDREVQRTLMQL--------LAGMDGFETRGDVKII 321
Query: 283 VTGNDFSTLYAPLIRDGRMEKFYWAPT--REDRIGVCSGIFRT 323
N L L+R GR ++ P E R+ + RT
Sbjct: 322 GATNRIDILDKALLRPGRFDRIIEIPLPDEEGRLSILKVHTRT 364
>sp|Q07590|SAV_SULAC Protein SAV OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM
639 / JCM 8929 / NBRC 15157 / NCIMB 11770) GN=sav PE=3
SV=2
Length = 780
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 73/174 (41%), Gaps = 18/174 (10%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + G N I + E+ S GE K IR+ +R+A ++
Sbjct: 526 LFGPPGTGKTMLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKA----RQAAP 581
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI-ADNPTNVQLPGMYNQEENPRVPII 282
+F +++D+ A G +T V ++VN L + P N +V II
Sbjct: 582 TVIFFDEIDSIAPIRGLSTDSGVTERIVNQLLAEMDGIVPLN-------------KVVII 628
Query: 283 VTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVD 336
N L L+R GR ++ + P + T NVP + V L D
Sbjct: 629 AATNRPDILDPALLRPGRFDRLIYVPPPDKTARFEILKVHTKNVPLAEDVSLED 682
>sp|P46463|PEX1_PICPA Peroxisome biosynthesis protein PAS1 OS=Komagataella pastoris GN=PEX1
PE=3 SV=1
Length = 1157
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 110/256 (42%), Gaps = 39/256 (15%)
Query: 115 YISQGLRQYSLDNT------LDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGI--WG 166
YI Q LR L + + GL A + + + + TK + + L GI +G
Sbjct: 781 YIPQSLRGVKLQKSDVRWDDIGGLRDAKSILLETLEWPTKYAPIFSSCPLRLRSGILLYG 840
Query: 167 GKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL 226
G GK+ V A+ G+N I + E+ + G + +R+ + A + K C L
Sbjct: 841 YPGCGKTLLASAVAAQCGLNFISIKGPEILNKYIGPSEQSVRELFERA----QAAKPCIL 896
Query: 227 FINDLDAGAGRMG----GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282
F ++ D+ A + G G T V NQM+ T M+ A+ L G+Y R +I
Sbjct: 897 FFDEFDSIAPKRGHDSTGVTDRVV-NQML--TQMDGAEG-----LDGVYVLAATSRPDLI 948
Query: 283 VTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPG 340
+ L+R GR++K P +DR+ + + R NV K V L + G
Sbjct: 949 DSA---------LLRPGRLDKSVICDMPDFDDRLDILQSVTRNMNVSKS--VNL-SSVAG 996
Query: 341 QSIDFFGA-LRARVYD 355
+ F GA L+A Y+
Sbjct: 997 ECSGFSGADLQALAYN 1012
>sp|Q54PJ1|PRS10_DICDI 26S protease regulatory subunit 10B OS=Dictyostelium discoideum
GN=psmC6 PE=1 SV=1
Length = 393
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 88/189 (46%), Gaps = 20/189 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
+K P + ++G G GK+ + + + N + + + + GE A++IR+ + A
Sbjct: 168 IKAPKGVLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIREMFGYAR 227
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
D + C +F++++DA GR ++ T ++ + TLM + + Q+ G +
Sbjct: 228 D----HQPCVIFMDEIDAIGGRR--FSEGTSADREIQRTLMELLN-----QMDGF---DT 273
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED--RIGV----CSGIFRTDNVPKE 329
+V II+ N L L+R GR+++ P + R+ V + I + +V E
Sbjct: 274 LSKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHAANITKHGDVDYE 333
Query: 330 DIVKLVDTF 338
I KL D F
Sbjct: 334 AIAKLADGF 342
>sp|Q9HPF0|CDCH_HALSA Protein CdcH OS=Halobacterium salinarum (strain ATCC 700922 / JCM
11081 / NRC-1) GN=cdcH PE=3 SV=1
Length = 742
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 66/149 (44%), Gaps = 16/149 (10%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V+ P + ++G G GK+ + V + N I + +L S GE K IRQ +R+A
Sbjct: 493 VEPPAGVLLYGPPGTGKTLMAKAVANETNANFISVRGPQLLSKWVGESEKAIRQTFRKAR 552
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
+ +F ++LD+ A G T V+ ++VN L +L G+ EE
Sbjct: 553 QVAP----TVIFFDELDSLAPGRGQTGGNNVSERVVNQLL---------TELDGLEEMEE 599
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKF 304
V +I N + LIR GR ++
Sbjct: 600 ---VMVIAATNRPDIIDPALIRSGRFDRL 625
>sp|Q9SEI2|PS6AA_ARATH 26S protease regulatory subunit 6A homolog A OS=Arabidopsis
thaliana GN=RPT5A PE=2 SV=1
Length = 424
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 81/195 (41%), Gaps = 22/195 (11%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V+ P + ++G G GK+ A+ + ++ +L G+ AKL+R ++
Sbjct: 202 VRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQ--- 258
Query: 216 DIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 274
+ K+ C +FI+++DA G R Q L+N QL G + E
Sbjct: 259 -LAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN--------QLDGFSSDE 309
Query: 275 ENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPK---- 328
R+ +I N L L+R GR+++ + PT E R + R NV
Sbjct: 310 ---RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNF 366
Query: 329 EDIVKLVDTFPGQSI 343
E++ + D F G +
Sbjct: 367 EELARSTDDFNGAQL 381
>sp|O23894|PRS6A_BRACM 26S protease regulatory subunit 6A homolog OS=Brassica campestris
GN=TBP1 PE=2 SV=1
Length = 424
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 81/195 (41%), Gaps = 22/195 (11%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V+ P + ++G G GK+ A+ + ++ +L G+ AKL+R ++
Sbjct: 202 VRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQ--- 258
Query: 216 DIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 274
+ K+ C +FI+++DA G R Q L+N QL G + E
Sbjct: 259 -LAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLN--------QLDGFSSDE 309
Query: 275 ENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRTDNVPK---- 328
R+ +I N L L+R GR+++ + PT E R + R NV
Sbjct: 310 ---RIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNF 366
Query: 329 EDIVKLVDTFPGQSI 343
E++ + D F G +
Sbjct: 367 EELARSTDDFNGAQL 381
>sp|Q6B952|YCF46_GRATL Uncharacterized AAA domain-containing protein ycf46 OS=Gracilaria
tenuistipitata var. liui GN=ycf46 PE=3 SV=1
Length = 491
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 102/230 (44%), Gaps = 28/230 (12%)
Query: 123 YSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAK 182
YS DN + GL + +++K +K N + VP + + G +G GKS + + +
Sbjct: 226 YSFDN-VGGLNVLKDWLNKRSKAFSKQAKNY-GLTVPKGILLIGIQGTGKSLIAKAISGQ 283
Query: 183 MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTT 242
+ + + G++ + G+ + +R + A ++ C L+I+++D R+ T
Sbjct: 284 WNLPLLKLDMGKIFASLVGQSEERMRHMIKTA----EQSSPCILWIDEIDKCFTRLNNYT 339
Query: 243 QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME 302
N ++++ L ++ E+ V +I T N +L + L+R GR +
Sbjct: 340 DSGTNGRVLSTMLTWLS--------------EKKKPVFVIATANQVLSLPSELLRKGRFD 385
Query: 303 KFYW--APTREDR---IGVCSGIFRTDNVPKEDI---VKLVDTFPGQSID 344
+ ++ P+ E+R + FR + K DI KL D F G I+
Sbjct: 386 EIFFLNLPSLEEREKIFQIHLMKFRPLSWRKYDIKYLSKLTDQFSGAEIE 435
>sp|Q5UT56|PAN2_HALVD Proteasome-activating nucleotidase 2 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=pan2 PE=2 SV=1
Length = 412
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 65/145 (44%), Gaps = 14/145 (9%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + V + + I M+ EL GE A+L+R ++ AA + +
Sbjct: 191 LYGPPGTGKTMLAKAVANETNASFIKMAGSELVQKFIGEGARLVRDLFKLAA----EREP 246
Query: 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283
+FI+++DA A + T T + V T+M + L M ++ + II
Sbjct: 247 VVVFIDEIDAVASKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDDRGDIRIIA 296
Query: 284 TGNDFSTLYAPLIRDGRMEKFYWAP 308
N F L ++R GR ++ P
Sbjct: 297 ATNRFDMLDEAILRPGRFDRLIEVP 321
>sp|O14126|PRS6A_SCHPO 26S protease regulatory subunit 6A OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tbp1 PE=3 SV=1
Length = 438
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 86/192 (44%), Gaps = 22/192 (11%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
VK P ++G G GK+ A+ + ++A +L G+ AKL+ R+A
Sbjct: 216 VKPPKGCLMFGPPGTGKTLLARACAAQSNATFLKLAAPQLVQMFIGDGAKLV----RDAF 271
Query: 216 DIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 274
+ K+ +FI++LDA G R ++ V T++ + + QL G + +
Sbjct: 272 ALAKEKSPAIIFIDELDAIGTKRFDSE---KAGDREVQRTMLELLN-----QLDGFSSDD 323
Query: 275 ENPRVPIIVTGNDFSTLYAPLIRDGRMEK--FYWAPTREDRIGVCSGIFRT----DNVPK 328
RV +I N TL L+R GR+++ + P E R+G+ R D++
Sbjct: 324 ---RVKVIAATNRVDTLDPALLRSGRLDRKLEFPLPNEEARVGILRIHSRKMAIDDDINW 380
Query: 329 EDIVKLVDTFPG 340
E++ + D + G
Sbjct: 381 EELARSTDEYNG 392
>sp|Q54CS8|PEX6_DICDI Peroxisomal biogenesis factor 6 OS=Dictyostelium discoideum GN=pex6
PE=3 SV=1
Length = 1201
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 87/181 (48%), Gaps = 21/181 (11%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
++G G GK+ + + + +N + + EL + GE K IR+ + +A ++ K
Sbjct: 957 LFGPPGTGKTLLAKAIATECSLNFLSVKGPELINMYIGESEKNIREIFNKA----RQAKP 1012
Query: 224 CCLFINDLDAGA-GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282
C +F ++LD+ A R G V +++V+ L +L GM +++ V II
Sbjct: 1013 CVIFFDELDSLAPSRGNGADSGGVMDRVVSQLL---------AELDGM---QKSSDVFII 1060
Query: 283 VTGNDFSTLYAPLIRDGRMEKFYW---APTREDRIGVCSGIFRTDNVPKE-DIVKLVDTF 338
N L + L+R GR+++ + + +E++ + + R N+ + D+ K+V+
Sbjct: 1061 GATNRPDLLDSSLMRPGRLDRLLYLGISSEKENQFKILQALTRKFNLADDVDLRKVVENC 1120
Query: 339 P 339
P
Sbjct: 1121 P 1121
>sp|B8GGN4|PAN_METPE Proteasome-activating nucleotidase OS=Methanosphaerula palustris
(strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3
SV=1
Length = 412
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 22/180 (12%)
Query: 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223
+ G G GK+ V + + + + EL GE A+L+R+ + ++ KK
Sbjct: 192 LHGPPGTGKTLLARAVAHQTEAHFLRVVGSELVQKYIGEGARLVRELF----ELAKKKSP 247
Query: 224 CCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282
+FI+++DA GA R T T ++ V+ TLM + ++ G N+ + V II
Sbjct: 248 SIIFIDEIDAIGASR---TESNTSGDREVHRTLMQLL-----AEMDGFSNRGD---VRII 296
Query: 283 VTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGV----CSGIFRTDNVPKEDIVKLVD 336
N L L+R GR ++ AP E R+ + C+G+ V DI D
Sbjct: 297 GATNRIDILDRALLRPGRFDRIIEIPAPDIEGRVSILNIHCAGMNIDKKVDIRDIATRTD 356
>sp|Q58889|PRS2_METJA Putative 26S protease regulatory subunit homolog MJ1494
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1494
PE=3 SV=2
Length = 371
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 111/241 (46%), Gaps = 38/241 (15%)
Query: 159 PLILGIWGGK--------GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR 210
P + G W K G GK+ + + + I++ A EL + G+ +K+IR+
Sbjct: 146 PKLFGEWAPKNVLFYGPPGTGKTLMARALATETNSSFILVKAPELIGEHVGDASKMIREL 205
Query: 211 YREAADIIKKGKMCCLFINDLDA-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG 269
Y+ A++ C +FI++LDA G R + + V +++VNA L +L G
Sbjct: 206 YQRASE----SAPCIVFIDELDAIGLSREYQSLRGDV-SEVVNALL---------TELDG 251
Query: 270 MYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF-YWAPTREDRIGVCSGIFRTDNVP- 327
+ +EN V I N+ + L P IR E+ + P E+R+ + + +P
Sbjct: 252 I---KENEGVVTIAATNNPAML-DPAIRSRFEEEIEFKLPNDEERLKIMELYAKKMPLPV 307
Query: 328 KEDIVKLVDT---FPGQSID---FFGALRARVYDDEVRKWISEVGIERIGKRLV-NSKEG 380
K ++ + V+ F G+ I AL + +D R ++S+ +E K+++ N +E
Sbjct: 308 KANLKEFVEKTKGFSGRDIKEKFLKPALHRAILED--RDYVSKEDLEWALKKILGNRREA 365
Query: 381 P 381
P
Sbjct: 366 P 366
>sp|Q9HNP9|PAN2_HALSA Proteasome-activating nucleotidase 2 OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=pan2 PE=3
SV=1
Length = 411
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 95/237 (40%), Gaps = 33/237 (13%)
Query: 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA 215
V+ P + + G G GK+ + V + + I M+ EL GE ++L+R +
Sbjct: 183 VEPPSGVLLHGPPGTGKTMLAKAVANQTDASFIKMAGSELVRKFIGEGSRLVRDLF---- 238
Query: 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275
++ ++ +FI+++DA A + T T + V T+M + L M +E
Sbjct: 239 ELAEQKDPAIIFIDEIDAVAAKR--TDSKTSGDAEVQRTMMQL--------LSEMDGFDE 288
Query: 276 NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-----TREDRIGVCSGIFR-TDNVPKE 329
+ II N F L + ++R GR ++ P RE + + +G D+V
Sbjct: 289 RGDIRIIAATNRFDMLDSAILRPGRFDRLIEVPNPNPDARERILEIHAGEMNVADSVDFS 348
Query: 330 DIVKLVDTFPGQSI-------------DFFGALRARVYDDEVRKWISEVGIERIGKR 373
D+ F G + D + + +DD K ++E E G R
Sbjct: 349 DLAADTAEFSGAQLASLATEAGMFAIRDDRDEVHRQDFDDAYEKLVAEGDTESSGPR 405
>sp|Q8SR13|PRS6A_ENCCU 26S protease regulatory subunit 6A OS=Encephalitozoon cuniculi
(strain GB-M1) GN=RPT5 PE=1 SV=1
Length = 401
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 71/154 (46%), Gaps = 14/154 (9%)
Query: 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA 214
N+K P + ++G G GK+ +K + ++ +L G+ A+L+ R+A
Sbjct: 178 NIKPPKGVLMYGPPGTGKTLMARACASKTNATFLKLAGPQLVQMYIGDGARLV----RDA 233
Query: 215 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 274
+ K+ K +FI+++DA + + Q ++ V T++ + + QL G + E
Sbjct: 234 FALAKERKPTIIFIDEIDAIGAKRSDSDQ--TGDREVQRTMLELLN-----QLDGFSSSE 286
Query: 275 ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308
E V II N L L+R GR+++ P
Sbjct: 287 E---VKIIAATNRVDILDPALLRSGRLDRKIEFP 317
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 164,235,210
Number of Sequences: 539616
Number of extensions: 7244806
Number of successful extensions: 19031
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 329
Number of HSP's that attempted gapping in prelim test: 18708
Number of HSP's gapped (non-prelim): 494
length of query: 438
length of database: 191,569,459
effective HSP length: 120
effective length of query: 318
effective length of database: 126,815,539
effective search space: 40327341402
effective search space used: 40327341402
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)