Query 013704
Match_columns 438
No_of_seqs 393 out of 3003
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:33:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013704.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013704hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00020 ribulose bisphosphate 100.0 3.3E-94 7.2E-99 719.0 34.1 410 9-423 2-413 (413)
2 KOG0651 26S proteasome regulat 100.0 1.4E-61 3.1E-66 469.5 9.7 372 1-419 1-387 (388)
3 COG1222 RPT1 ATP-dependent 26S 100.0 3.2E-45 6.9E-50 362.0 18.4 209 154-379 180-397 (406)
4 KOG0733 Nuclear AAA ATPase (VC 100.0 1.1E-42 2.4E-47 360.6 16.7 247 153-426 539-797 (802)
5 KOG0730 AAA+-type ATPase [Post 100.0 1E-40 2.3E-45 350.0 18.6 223 154-415 463-691 (693)
6 KOG0738 AAA+-type ATPase [Post 100.0 8.4E-40 1.8E-44 325.4 17.4 243 155-419 240-490 (491)
7 KOG0736 Peroxisome assembly fa 100.0 1.3E-39 2.7E-44 344.9 18.8 240 154-417 700-951 (953)
8 KOG0733 Nuclear AAA ATPase (VC 100.0 5.1E-39 1.1E-43 333.5 16.7 198 151-364 215-418 (802)
9 KOG0734 AAA+-type ATPase conta 100.0 9E-37 1.9E-41 312.8 14.9 231 154-404 332-572 (752)
10 KOG0727 26S proteasome regulat 100.0 2.2E-36 4.9E-41 287.1 14.3 210 153-379 183-401 (408)
11 KOG0735 AAA+-type ATPase [Post 100.0 4.9E-35 1.1E-39 307.8 16.2 192 155-366 697-894 (952)
12 KOG0731 AAA+-type ATPase conta 100.0 8.3E-35 1.8E-39 313.3 15.9 232 153-403 338-583 (774)
13 KOG0726 26S proteasome regulat 100.0 9.7E-35 2.1E-39 280.4 13.1 208 155-379 215-431 (440)
14 KOG0728 26S proteasome regulat 100.0 3.1E-34 6.7E-39 272.2 16.3 210 153-379 175-393 (404)
15 KOG0739 AAA+-type ATPase [Post 100.0 1.4E-34 3.1E-39 280.0 12.7 259 141-420 148-438 (439)
16 KOG0729 26S proteasome regulat 100.0 2.5E-34 5.4E-39 274.9 12.8 209 154-379 206-423 (435)
17 TIGR01243 CDC48 AAA family ATP 100.0 1.2E-32 2.7E-37 304.5 22.6 239 153-417 481-729 (733)
18 COG0465 HflB ATP-dependent Zn 100.0 4.7E-33 1E-37 295.0 18.1 231 155-404 179-421 (596)
19 KOG0652 26S proteasome regulat 100.0 2.1E-33 4.5E-38 267.9 13.1 197 152-365 198-400 (424)
20 COG1223 Predicted ATPase (AAA+ 100.0 3.2E-32 7E-37 259.7 16.7 183 144-344 133-324 (368)
21 COG0464 SpoVK ATPases of the A 100.0 3.3E-32 7.1E-37 288.6 18.7 188 155-362 272-467 (494)
22 KOG0737 AAA+-type ATPase [Post 100.0 5.6E-32 1.2E-36 269.1 17.8 190 156-365 124-319 (386)
23 CHL00195 ycf46 Ycf46; Provisio 100.0 1.1E-31 2.3E-36 282.9 20.6 183 154-357 254-444 (489)
24 PTZ00454 26S protease regulato 100.0 7.5E-32 1.6E-36 278.2 18.7 208 152-376 172-388 (398)
25 PRK03992 proteasome-activating 100.0 6.8E-31 1.5E-35 271.0 20.0 208 153-377 159-375 (389)
26 CHL00206 ycf2 Ycf2; Provisiona 100.0 4E-31 8.7E-36 301.7 19.1 225 155-404 1626-1905(2281)
27 KOG0741 AAA+-type ATPase [Post 100.0 5.5E-32 1.2E-36 277.5 10.7 195 154-363 251-461 (744)
28 TIGR01241 FtsH_fam ATP-depende 100.0 8.4E-31 1.8E-35 278.1 18.1 232 154-404 83-326 (495)
29 CHL00176 ftsH cell division pr 100.0 2.9E-30 6.3E-35 279.6 17.7 234 154-404 211-453 (638)
30 PTZ00361 26 proteosome regulat 100.0 7.1E-30 1.5E-34 265.7 18.4 208 153-377 211-427 (438)
31 KOG0740 AAA+-type ATPase [Post 100.0 3.5E-30 7.6E-35 263.7 12.6 271 121-419 148-425 (428)
32 TIGR03689 pup_AAA proteasome A 100.0 9.9E-29 2.2E-33 260.6 22.2 188 152-355 209-408 (512)
33 KOG0730 AAA+-type ATPase [Post 100.0 9.3E-29 2E-33 260.3 17.0 218 153-394 212-436 (693)
34 TIGR01242 26Sp45 26S proteasom 100.0 1.5E-28 3.1E-33 251.4 17.5 191 153-360 150-346 (364)
35 PRK10733 hflB ATP-dependent me 100.0 2.7E-28 5.9E-33 265.9 19.2 231 155-404 181-423 (644)
36 KOG0732 AAA+-type ATPase conta 99.9 2.4E-26 5.1E-31 253.8 15.8 191 153-363 293-495 (1080)
37 TIGR01243 CDC48 AAA family ATP 99.9 5E-25 1.1E-29 244.1 18.2 191 153-363 206-402 (733)
38 PF00004 AAA: ATPase family as 99.9 2.6E-23 5.5E-28 179.9 12.2 130 162-308 1-131 (132)
39 KOG0743 AAA+-type ATPase [Post 99.8 8.2E-20 1.8E-24 186.8 17.9 176 148-344 224-410 (457)
40 KOG0744 AAA+-type ATPase [Post 99.8 1.5E-19 3.3E-24 177.5 9.8 204 104-321 120-340 (423)
41 COG0466 Lon ATP-dependent Lon 99.8 6.5E-18 1.4E-22 180.2 14.7 149 159-323 350-510 (782)
42 KOG0742 AAA+-type ATPase [Post 99.8 6E-18 1.3E-22 170.4 12.7 194 129-344 354-582 (630)
43 KOG2004 Mitochondrial ATP-depe 99.7 1.9E-17 4E-22 176.1 16.0 152 155-323 434-598 (906)
44 TIGR02881 spore_V_K stage V sp 99.7 9E-17 2E-21 157.3 18.6 151 157-334 40-206 (261)
45 CHL00181 cbbX CbbX; Provisiona 99.7 4.1E-17 9E-22 162.1 15.9 142 158-325 58-213 (287)
46 TIGR02639 ClpA ATP-dependent C 99.7 8.1E-17 1.7E-21 178.7 17.0 171 158-353 202-405 (731)
47 TIGR02880 cbbX_cfxQ probable R 99.7 2.6E-16 5.7E-21 156.1 17.2 151 158-334 57-223 (284)
48 TIGR00763 lon ATP-dependent pr 99.7 3E-16 6.5E-21 175.1 18.6 163 160-339 348-535 (775)
49 KOG0735 AAA+-type ATPase [Post 99.7 5.4E-16 1.2E-20 164.8 14.9 186 157-359 429-626 (952)
50 PRK11034 clpA ATP-dependent Cl 99.7 1.1E-15 2.4E-20 169.0 16.7 171 158-353 206-409 (758)
51 PF05496 RuvB_N: Holliday junc 99.6 4.5E-15 9.8E-20 141.2 14.2 191 118-342 16-215 (233)
52 KOG0736 Peroxisome assembly fa 99.6 1.2E-14 2.5E-19 156.0 16.7 178 156-353 428-609 (953)
53 COG0464 SpoVK ATPases of the A 99.6 3.1E-14 6.8E-19 151.3 19.7 186 154-361 13-204 (494)
54 CHL00095 clpC Clp protease ATP 99.6 8.1E-14 1.8E-18 156.6 21.4 173 157-355 198-403 (821)
55 PRK10787 DNA-binding ATP-depen 99.6 6E-14 1.3E-18 156.2 19.7 164 159-339 349-536 (784)
56 COG2256 MGS1 ATPase related to 99.6 6.1E-14 1.3E-18 142.1 17.8 125 158-319 47-174 (436)
57 TIGR03345 VI_ClpV1 type VI sec 99.6 2.1E-14 4.5E-19 161.4 15.6 172 159-355 208-412 (852)
58 TIGR03346 chaperone_ClpB ATP-d 99.5 2.7E-14 6E-19 160.9 13.3 173 158-355 193-398 (852)
59 PRK10865 protein disaggregatio 99.5 4.7E-14 1E-18 158.8 14.7 169 159-352 199-400 (857)
60 PRK00080 ruvB Holliday junctio 99.5 2.3E-13 4.9E-18 137.5 15.0 159 157-342 49-216 (328)
61 PRK00149 dnaA chromosomal repl 99.5 2.1E-13 4.5E-18 143.6 15.2 194 121-351 117-325 (450)
62 PRK14086 dnaA chromosomal repl 99.5 2.4E-13 5.3E-18 146.1 15.8 192 121-349 283-489 (617)
63 TIGR00390 hslU ATP-dependent p 99.5 4E-13 8.6E-18 138.5 15.8 156 157-318 45-343 (441)
64 PRK12422 chromosomal replicati 99.5 4.3E-13 9.3E-18 140.9 15.9 196 121-352 106-317 (445)
65 PRK05201 hslU ATP-dependent pr 99.5 4.7E-13 1E-17 138.0 15.1 155 158-318 49-345 (443)
66 TIGR00362 DnaA chromosomal rep 99.5 7.3E-13 1.6E-17 137.6 14.9 191 122-349 106-311 (405)
67 COG2255 RuvB Holliday junction 99.5 1.2E-12 2.7E-17 127.5 15.2 156 157-342 50-217 (332)
68 PRK04195 replication factor C 99.5 8.5E-13 1.9E-17 140.2 15.2 155 157-344 37-197 (482)
69 PRK14956 DNA polymerase III su 99.4 1.8E-12 3.8E-17 136.2 16.7 150 157-340 38-214 (484)
70 TIGR00635 ruvB Holliday juncti 99.4 1.2E-12 2.7E-17 130.2 14.7 157 157-340 28-193 (305)
71 PHA02544 44 clamp loader, smal 99.4 2.5E-12 5.3E-17 128.7 17.0 150 157-340 41-201 (316)
72 TIGR02640 gas_vesic_GvpN gas v 99.4 1.7E-12 3.6E-17 127.5 15.1 146 160-321 22-198 (262)
73 PRK07003 DNA polymerase III su 99.4 6E-12 1.3E-16 137.3 20.6 177 119-340 9-212 (830)
74 PRK13342 recombination factor 99.4 7.5E-12 1.6E-16 130.5 19.5 148 159-344 36-191 (413)
75 PRK12323 DNA polymerase III su 99.4 3.5E-12 7.7E-17 137.4 16.8 178 119-341 9-218 (700)
76 PRK05342 clpX ATP-dependent pr 99.4 3.5E-12 7.6E-17 132.7 16.3 108 159-267 108-218 (412)
77 KOG0989 Replication factor C, 99.4 2.7E-12 5.7E-17 126.3 14.1 151 159-344 57-225 (346)
78 PRK14962 DNA polymerase III su 99.4 5.4E-12 1.2E-16 133.5 16.7 150 157-340 34-210 (472)
79 PRK11034 clpA ATP-dependent Cl 99.4 8.1E-12 1.8E-16 138.5 17.6 145 157-321 485-666 (758)
80 PRK14088 dnaA chromosomal repl 99.4 6.1E-12 1.3E-16 132.2 15.8 192 121-350 100-307 (440)
81 PRK07940 DNA polymerase III su 99.4 4.6E-12 1E-16 131.1 14.0 155 155-345 32-213 (394)
82 TIGR02639 ClpA ATP-dependent C 99.4 1.7E-11 3.8E-16 136.3 19.3 143 156-322 480-663 (731)
83 TIGR02928 orc1/cdc6 family rep 99.4 1.8E-11 4E-16 124.6 17.8 141 157-322 38-213 (365)
84 PRK14949 DNA polymerase III su 99.4 1.5E-11 3.2E-16 136.5 17.5 180 119-337 9-209 (944)
85 PRK14960 DNA polymerase III su 99.4 8.3E-12 1.8E-16 134.8 14.8 150 157-340 35-211 (702)
86 TIGR00382 clpX endopeptidase C 99.3 7.9E-12 1.7E-16 129.8 13.3 127 159-287 116-247 (413)
87 PRK07764 DNA polymerase III su 99.3 6.3E-11 1.4E-15 132.5 21.1 177 119-340 8-213 (824)
88 PRK14961 DNA polymerase III su 99.3 2.1E-11 4.6E-16 125.1 15.6 150 157-340 36-212 (363)
89 PRK07994 DNA polymerase III su 99.3 4.5E-11 9.7E-16 130.1 18.4 165 119-328 9-198 (647)
90 PRK13341 recombination factor 99.3 4.4E-11 9.5E-16 132.2 18.6 147 159-344 52-212 (725)
91 COG0542 clpA ATP-binding subun 99.3 8.3E-11 1.8E-15 129.1 20.3 171 159-355 191-395 (786)
92 PLN03025 replication factor C 99.3 8.1E-12 1.8E-16 125.8 11.5 149 161-344 36-195 (319)
93 PRK14087 dnaA chromosomal repl 99.3 2.1E-11 4.5E-16 128.5 14.9 193 122-349 111-320 (450)
94 PRK00411 cdc6 cell division co 99.3 6.3E-11 1.4E-15 122.0 17.3 161 157-340 53-246 (394)
95 PRK06893 DNA replication initi 99.3 9.7E-12 2.1E-16 119.7 10.5 147 160-342 40-197 (229)
96 cd00009 AAA The AAA+ (ATPases 99.3 2.2E-11 4.8E-16 104.9 10.7 128 158-308 18-150 (151)
97 PRK14958 DNA polymerase III su 99.3 1.9E-11 4.2E-16 130.5 12.6 177 119-340 9-212 (509)
98 PRK08691 DNA polymerase III su 99.3 8.4E-11 1.8E-15 128.0 17.5 150 157-340 36-212 (709)
99 PRK12402 replication factor C 99.3 2.7E-11 5.8E-16 121.7 12.7 156 160-344 37-221 (337)
100 TIGR01650 PD_CobS cobaltochela 99.3 1.3E-11 2.8E-16 124.1 10.3 143 159-321 64-233 (327)
101 PF00308 Bac_DnaA: Bacterial d 99.3 1.6E-11 3.6E-16 117.5 9.6 182 122-340 4-200 (219)
102 PF07728 AAA_5: AAA domain (dy 99.3 1.6E-11 3.4E-16 108.3 8.7 121 161-301 1-139 (139)
103 PRK14957 DNA polymerase III su 99.3 1.6E-10 3.4E-15 124.0 17.8 148 157-338 36-210 (546)
104 PTZ00112 origin recognition co 99.3 9E-11 1.9E-15 129.0 16.1 152 160-336 782-966 (1164)
105 PRK05563 DNA polymerase III su 99.3 8.4E-11 1.8E-15 127.0 15.3 177 119-340 9-212 (559)
106 TIGR02397 dnaX_nterm DNA polym 99.2 6.1E-11 1.3E-15 120.2 13.3 150 157-340 34-210 (355)
107 PRK06645 DNA polymerase III su 99.2 4.8E-11 1E-15 127.0 13.0 150 157-340 41-221 (507)
108 TIGR02902 spore_lonB ATP-depen 99.2 1E-10 2.3E-15 125.6 15.2 162 158-335 85-292 (531)
109 PRK14951 DNA polymerase III su 99.2 5.6E-11 1.2E-15 129.0 13.1 178 118-340 8-217 (618)
110 PRK14970 DNA polymerase III su 99.2 2.5E-10 5.5E-15 116.9 17.3 157 157-344 37-204 (367)
111 PF07724 AAA_2: AAA domain (Cd 99.2 4.7E-12 1E-16 116.8 3.7 125 160-290 4-132 (171)
112 PRK14959 DNA polymerase III su 99.2 1.5E-10 3.2E-15 125.3 15.7 176 118-338 8-210 (624)
113 PRK05642 DNA replication initi 99.2 2.7E-10 5.9E-15 110.1 15.1 174 122-341 15-201 (234)
114 KOG2028 ATPase related to the 99.2 5.8E-11 1.2E-15 119.1 10.5 123 160-319 163-292 (554)
115 TIGR00678 holB DNA polymerase 99.2 1.1E-10 2.3E-15 108.6 11.7 146 157-340 12-183 (188)
116 PRK08084 DNA replication initi 99.2 4E-10 8.6E-15 108.9 16.2 145 160-342 46-203 (235)
117 PRK14969 DNA polymerase III su 99.2 1.8E-10 4E-15 123.6 15.1 148 157-338 36-210 (527)
118 PRK14952 DNA polymerase III su 99.2 3.5E-10 7.5E-15 122.3 17.0 163 120-327 7-196 (584)
119 PRK14963 DNA polymerase III su 99.2 2.6E-10 5.6E-15 121.7 15.8 148 157-338 34-207 (504)
120 PRK14965 DNA polymerase III su 99.2 9E-11 1.9E-15 127.2 12.5 178 118-340 8-212 (576)
121 TIGR03345 VI_ClpV1 type VI sec 99.2 3.6E-10 7.7E-15 127.5 17.5 159 139-321 575-780 (852)
122 PRK14964 DNA polymerase III su 99.2 7.8E-11 1.7E-15 124.8 11.5 150 157-340 33-209 (491)
123 KOG0745 Putative ATP-dependent 99.2 8.5E-11 1.8E-15 120.1 11.1 143 160-306 227-381 (564)
124 PRK06305 DNA polymerase III su 99.2 4.1E-10 9E-15 118.7 16.5 178 118-340 9-214 (451)
125 smart00382 AAA ATPases associa 99.2 2.6E-10 5.6E-15 97.0 12.1 125 159-307 2-144 (148)
126 PRK11331 5-methylcytosine-spec 99.2 1.1E-10 2.5E-15 121.6 11.3 138 159-310 194-359 (459)
127 PRK05896 DNA polymerase III su 99.2 1.8E-10 3.8E-15 124.2 13.1 150 157-340 36-212 (605)
128 TIGR03420 DnaA_homol_Hda DnaA 99.2 5.2E-10 1.1E-14 106.2 14.9 149 157-344 36-197 (226)
129 CHL00095 clpC Clp protease ATP 99.2 5E-10 1.1E-14 126.2 16.8 163 137-322 516-733 (821)
130 KOG1969 DNA replication checkp 99.2 3.7E-10 8.1E-15 121.4 14.7 158 160-340 327-502 (877)
131 PRK07133 DNA polymerase III su 99.2 2.7E-10 5.8E-15 125.0 13.8 156 157-340 38-211 (725)
132 PRK06620 hypothetical protein; 99.2 4.4E-10 9.6E-15 107.3 13.3 149 143-344 27-185 (214)
133 COG1219 ClpX ATP-dependent pro 99.1 1.4E-10 3.1E-15 114.6 9.7 136 160-297 98-245 (408)
134 PRK08727 hypothetical protein; 99.1 2.7E-10 5.9E-15 109.9 11.5 143 160-341 42-197 (233)
135 PRK14953 DNA polymerase III su 99.1 3.9E-10 8.4E-15 119.9 13.7 150 157-340 36-212 (486)
136 PRK06647 DNA polymerase III su 99.1 8.9E-10 1.9E-14 119.0 15.9 178 118-340 8-212 (563)
137 PRK08903 DnaA regulatory inact 99.1 1.1E-09 2.3E-14 104.7 14.6 144 157-344 40-195 (227)
138 PRK14948 DNA polymerase III su 99.1 1.3E-09 2.8E-14 118.9 16.7 156 157-340 36-214 (620)
139 PRK00440 rfc replication facto 99.1 1.1E-09 2.4E-14 109.0 14.6 149 161-344 40-198 (319)
140 TIGR03346 chaperone_ClpB ATP-d 99.1 2.8E-09 6E-14 120.6 18.6 166 136-321 571-776 (852)
141 PRK09111 DNA polymerase III su 99.1 3E-09 6.6E-14 115.5 18.0 156 157-340 44-225 (598)
142 PRK14950 DNA polymerase III su 99.1 4.4E-09 9.4E-14 114.5 19.3 178 118-340 8-213 (585)
143 PRK08116 hypothetical protein; 99.1 7.8E-10 1.7E-14 109.1 11.8 135 117-288 76-221 (268)
144 PRK10865 protein disaggregatio 99.1 5.2E-09 1.1E-13 118.3 19.8 161 138-321 576-779 (857)
145 PRK14955 DNA polymerase III su 99.1 8.2E-10 1.8E-14 114.7 11.6 154 157-338 36-218 (397)
146 PRK14954 DNA polymerase III su 99.1 2E-09 4.3E-14 117.3 14.9 182 118-338 8-218 (620)
147 COG0542 clpA ATP-binding subun 99.1 2E-09 4.3E-14 118.4 14.9 162 138-322 499-706 (786)
148 COG0714 MoxR-like ATPases [Gen 99.1 3.8E-10 8.3E-15 114.2 8.6 144 160-321 44-203 (329)
149 KOG0741 AAA+-type ATPase [Post 99.1 7.1E-10 1.5E-14 115.6 10.5 139 154-312 533-674 (744)
150 PRK12377 putative replication 99.0 8.2E-10 1.8E-14 107.7 10.0 99 159-288 101-206 (248)
151 PHA02244 ATPase-like protein 99.0 8.6E-10 1.9E-14 112.5 10.3 136 159-317 119-269 (383)
152 PRK06835 DNA replication prote 99.0 7E-10 1.5E-14 112.4 9.3 123 135-288 160-289 (329)
153 TIGR02903 spore_lon_C ATP-depe 99.0 7.3E-09 1.6E-13 113.2 17.3 162 158-339 174-385 (615)
154 COG1474 CDC6 Cdc6-related prot 99.0 1.9E-08 4.1E-13 103.5 19.3 177 157-360 40-248 (366)
155 PRK08451 DNA polymerase III su 99.0 5.6E-09 1.2E-13 111.8 15.0 150 157-340 34-210 (535)
156 PRK05707 DNA polymerase III su 99.0 4.8E-09 1E-13 106.4 13.7 135 156-321 19-178 (328)
157 COG0470 HolB ATPase involved i 99.0 2.5E-09 5.5E-14 106.5 11.2 129 157-315 22-175 (325)
158 PRK07952 DNA replication prote 99.0 5.4E-09 1.2E-13 101.8 11.5 113 144-288 85-205 (244)
159 PF07726 AAA_3: ATPase family 98.9 6.8E-10 1.5E-14 97.3 4.4 118 161-301 1-129 (131)
160 PRK06921 hypothetical protein; 98.9 6.1E-09 1.3E-13 102.7 11.4 105 118-233 76-188 (266)
161 COG0593 DnaA ATPase involved i 98.9 5.2E-08 1.1E-12 100.8 18.1 192 119-349 80-287 (408)
162 PRK08181 transposase; Validate 98.9 4.7E-09 1E-13 103.6 9.7 101 158-288 105-209 (269)
163 COG1220 HslU ATP-dependent pro 98.9 1.7E-08 3.6E-13 100.8 13.4 92 221-318 249-346 (444)
164 PRK14971 DNA polymerase III su 98.9 1.4E-08 3E-13 110.9 13.9 148 157-338 37-212 (614)
165 PRK09112 DNA polymerase III su 98.9 9.4E-08 2E-12 97.8 19.0 157 156-341 42-233 (351)
166 PRK13407 bchI magnesium chelat 98.9 9.3E-09 2E-13 104.4 11.1 83 222-320 128-215 (334)
167 PF05673 DUF815: Protein of un 98.9 3E-08 6.5E-13 95.9 13.9 139 156-327 49-213 (249)
168 PRK08939 primosomal protein Dn 98.9 1.4E-08 3E-13 102.1 11.0 69 158-234 155-229 (306)
169 PRK07471 DNA polymerase III su 98.8 4.1E-08 8.8E-13 101.0 14.3 159 156-344 38-237 (365)
170 TIGR02031 BchD-ChlD magnesium 98.8 1.5E-08 3.3E-13 110.2 11.4 144 160-321 17-174 (589)
171 CHL00081 chlI Mg-protoporyphyr 98.8 3.8E-08 8.2E-13 100.4 13.4 85 220-320 142-231 (350)
172 PRK09087 hypothetical protein; 98.8 3E-08 6.6E-13 95.4 11.7 134 160-341 45-188 (226)
173 PRK06964 DNA polymerase III su 98.8 1E-07 2.2E-12 97.2 15.5 156 157-344 19-224 (342)
174 PRK13531 regulatory ATPase Rav 98.8 6.7E-08 1.4E-12 101.9 14.5 135 160-319 40-192 (498)
175 PRK04132 replication factor C 98.8 2.7E-08 5.8E-13 111.3 12.2 145 162-340 567-723 (846)
176 PRK05564 DNA polymerase III su 98.8 1.7E-07 3.7E-12 94.2 17.0 151 156-340 23-182 (313)
177 PF01695 IstB_IS21: IstB-like 98.8 3.2E-09 6.9E-14 98.6 3.9 102 157-288 45-150 (178)
178 TIGR02442 Cob-chelat-sub cobal 98.8 3.1E-08 6.7E-13 108.8 12.1 143 160-320 26-213 (633)
179 PRK06526 transposase; Provisio 98.8 5E-09 1.1E-13 102.6 5.3 103 156-288 95-201 (254)
180 COG2812 DnaX DNA polymerase II 98.8 5.8E-08 1.3E-12 103.1 13.1 158 156-341 35-213 (515)
181 TIGR02030 BchI-ChlI magnesium 98.7 2.7E-08 5.9E-13 101.2 8.9 84 220-319 129-217 (337)
182 PRK07399 DNA polymerase III su 98.7 2.4E-07 5.3E-12 93.5 15.4 159 157-344 24-220 (314)
183 TIGR03015 pepcterm_ATPase puta 98.7 9.9E-07 2.1E-11 85.9 17.3 172 159-356 43-245 (269)
184 COG1484 DnaC DNA replication p 98.7 1.3E-07 2.8E-12 92.7 11.0 69 158-234 104-179 (254)
185 PRK06871 DNA polymerase III su 98.7 2E-07 4.3E-12 94.4 12.2 137 156-320 21-178 (325)
186 PRK08058 DNA polymerase III su 98.7 5.4E-07 1.2E-11 91.5 15.4 130 156-318 25-179 (329)
187 smart00350 MCM minichromosome 98.7 2.6E-08 5.7E-13 106.7 6.1 141 160-322 237-401 (509)
188 PRK08769 DNA polymerase III su 98.6 6.8E-07 1.5E-11 90.4 15.6 157 156-344 23-207 (319)
189 PRK09183 transposase/IS protei 98.6 3.2E-08 6.9E-13 97.2 5.7 104 156-288 99-206 (259)
190 PRK07993 DNA polymerase III su 98.6 1.8E-07 3.9E-12 95.2 10.9 155 156-344 21-203 (334)
191 PF00158 Sigma54_activat: Sigm 98.6 8.2E-08 1.8E-12 88.4 6.7 121 158-302 21-155 (168)
192 TIGR00602 rad24 checkpoint pro 98.5 1.1E-06 2.3E-11 96.2 14.1 32 158-189 109-140 (637)
193 smart00763 AAA_PrkA PrkA AAA d 98.5 1.5E-06 3.1E-11 88.9 14.1 72 249-324 250-330 (361)
194 PRK08699 DNA polymerase III su 98.5 6.8E-07 1.5E-11 90.6 11.6 133 157-318 19-182 (325)
195 PF13177 DNA_pol3_delta2: DNA 98.5 4.2E-07 9.1E-12 83.0 9.0 118 156-304 16-156 (162)
196 PRK06090 DNA polymerase III su 98.5 1.9E-06 4.2E-11 87.0 14.4 154 156-344 22-200 (319)
197 PF13401 AAA_22: AAA domain; P 98.5 6.7E-07 1.5E-11 77.2 9.6 75 158-235 3-100 (131)
198 PF05621 TniB: Bacterial TniB 98.5 2.5E-06 5.3E-11 85.1 14.3 204 145-377 47-284 (302)
199 TIGR02974 phageshock_pspF psp 98.5 5E-07 1.1E-11 91.8 9.1 133 159-314 22-176 (329)
200 COG2607 Predicted ATPase (AAA+ 98.5 2.6E-06 5.5E-11 82.0 13.0 151 145-328 71-246 (287)
201 KOG2170 ATPase of the AAA+ sup 98.4 8.3E-07 1.8E-11 87.7 8.0 106 126-235 81-191 (344)
202 PF06309 Torsin: Torsin; Inte 98.4 3.3E-06 7.1E-11 74.0 10.8 90 139-228 33-127 (127)
203 PF12775 AAA_7: P-loop contain 98.4 1.3E-07 2.7E-12 93.7 2.2 143 159-322 33-194 (272)
204 PF13173 AAA_14: AAA domain 98.4 1.9E-06 4.1E-11 75.2 8.8 69 160-234 3-73 (128)
205 PRK11608 pspF phage shock prot 98.3 1.9E-06 4.1E-11 87.4 9.6 133 159-314 29-183 (326)
206 cd01120 RecA-like_NTPases RecA 98.3 3.1E-06 6.6E-11 74.8 9.6 114 162-291 2-140 (165)
207 KOG0991 Replication factor C, 98.3 1.4E-06 3.1E-11 83.4 7.5 135 160-326 49-190 (333)
208 KOG2035 Replication factor C, 98.3 1.7E-05 3.6E-10 77.9 14.9 153 160-340 35-220 (351)
209 PRK15424 propionate catabolism 98.3 3.2E-06 6.9E-11 91.1 10.7 133 158-314 241-405 (538)
210 TIGR01817 nifA Nif-specific re 98.3 3.6E-06 7.7E-11 90.8 11.1 158 159-341 219-413 (534)
211 PRK10820 DNA-binding transcrip 98.3 9.3E-06 2E-10 87.4 14.1 187 122-341 200-422 (520)
212 TIGR00368 Mg chelatase-related 98.3 1.4E-06 3.1E-11 93.0 7.6 130 158-310 210-391 (499)
213 PHA00729 NTP-binding motif con 98.2 1.9E-06 4E-11 82.9 6.7 27 159-185 17-43 (226)
214 PF00910 RNA_helicase: RNA hel 98.2 4.7E-06 1E-10 70.7 8.3 23 162-184 1-23 (107)
215 PF03969 AFG1_ATPase: AFG1-lik 98.2 6.6E-06 1.4E-10 84.6 11.0 31 155-185 58-88 (362)
216 PRK05022 anaerobic nitric oxid 98.2 4.7E-06 1E-10 89.5 10.1 161 158-341 209-405 (509)
217 PRK11388 DNA-binding transcrip 98.2 4.3E-06 9.2E-11 92.1 9.9 158 159-340 348-538 (638)
218 TIGR02329 propionate_PrpR prop 98.2 7.5E-06 1.6E-10 88.1 11.4 109 159-288 235-358 (526)
219 PF03215 Rad17: Rad17 cell cyc 98.2 1.4E-05 3E-10 85.8 13.4 38 155-192 41-78 (519)
220 PTZ00111 DNA replication licen 98.2 1.7E-06 3.7E-11 96.9 6.3 140 159-320 492-656 (915)
221 PF05729 NACHT: NACHT domain 98.2 1.7E-05 3.7E-10 70.5 11.5 142 161-323 2-165 (166)
222 KOG1514 Origin recognition com 98.2 4.7E-05 1E-09 82.6 16.0 171 160-357 423-628 (767)
223 PF12774 AAA_6: Hydrolytic ATP 98.1 1.8E-05 4E-10 76.5 10.8 140 159-317 32-176 (231)
224 KOG1051 Chaperone HSP104 and r 98.1 2.2E-05 4.7E-10 88.2 12.7 112 157-289 589-712 (898)
225 COG1224 TIP49 DNA helicase TIP 98.1 6E-06 1.3E-10 83.4 7.2 60 155-215 61-122 (450)
226 PRK15429 formate hydrogenlyase 98.1 1.2E-05 2.5E-10 89.4 10.0 160 159-341 399-594 (686)
227 COG1221 PspF Transcriptional r 98.1 2.1E-06 4.5E-11 88.9 3.4 133 160-314 102-253 (403)
228 COG3829 RocR Transcriptional r 98.1 7.2E-06 1.6E-10 86.9 7.4 151 121-303 240-403 (560)
229 PF06068 TIP49: TIP49 C-termin 98.1 5.1E-06 1.1E-10 84.7 6.0 56 158-214 49-106 (398)
230 KOG1968 Replication factor C, 98.0 9.1E-06 2E-10 91.5 7.8 156 161-344 359-526 (871)
231 TIGR02237 recomb_radB DNA repa 98.0 3.9E-05 8.4E-10 72.2 11.0 82 155-236 8-111 (209)
232 COG1239 ChlI Mg-chelatase subu 98.0 3.5E-05 7.6E-10 79.6 11.4 148 160-323 39-234 (423)
233 KOG0990 Replication factor C, 98.0 6.6E-06 1.4E-10 82.0 5.4 131 161-323 64-205 (360)
234 PRK09862 putative ATP-dependen 98.0 9.8E-06 2.1E-10 86.6 7.0 132 158-307 209-385 (506)
235 PF00931 NB-ARC: NB-ARC domain 98.0 0.0003 6.5E-09 69.0 17.0 152 157-344 17-198 (287)
236 PF14532 Sigma54_activ_2: Sigm 98.0 1.2E-05 2.7E-10 71.0 6.3 60 159-236 21-83 (138)
237 PRK13406 bchD magnesium chelat 97.9 0.00016 3.4E-09 78.9 14.9 200 160-379 26-255 (584)
238 TIGR02915 PEP_resp_reg putativ 97.9 7.5E-05 1.6E-09 78.3 12.1 158 159-340 162-356 (445)
239 cd01124 KaiC KaiC is a circadi 97.9 8.5E-05 1.8E-09 68.1 11.1 31 162-192 2-35 (187)
240 PRK05917 DNA polymerase III su 97.9 4.3E-05 9.3E-10 76.2 9.6 123 156-306 16-151 (290)
241 PF00493 MCM: MCM2/3/5 family 97.9 7.3E-06 1.6E-10 83.3 4.2 137 158-323 56-223 (331)
242 PRK15115 response regulator Gl 97.9 3.4E-05 7.4E-10 80.9 9.2 157 159-340 157-351 (444)
243 COG1618 Predicted nucleotide k 97.9 9.7E-05 2.1E-09 67.4 10.7 27 157-183 3-29 (179)
244 PRK10923 glnG nitrogen regulat 97.9 7.6E-05 1.6E-09 78.9 11.5 160 159-341 161-356 (469)
245 PF01637 Arch_ATPase: Archaeal 97.9 0.0001 2.3E-09 69.0 11.0 25 159-183 20-44 (234)
246 PF13207 AAA_17: AAA domain; P 97.9 1.6E-05 3.4E-10 68.0 4.2 31 162-192 2-32 (121)
247 PRK09376 rho transcription ter 97.8 4.4E-05 9.5E-10 78.9 7.9 77 160-236 170-270 (416)
248 COG1485 Predicted ATPase [Gene 97.8 8.2E-05 1.8E-09 75.3 9.5 107 156-293 62-177 (367)
249 KOG1970 Checkpoint RAD17-RFC c 97.8 0.00018 3.9E-09 76.4 11.8 56 136-192 78-143 (634)
250 PRK08118 topology modulation p 97.8 6.7E-05 1.5E-09 68.9 7.4 32 161-192 3-34 (167)
251 PRK11823 DNA repair protein Ra 97.8 8.9E-05 1.9E-09 78.5 9.3 79 155-237 76-171 (446)
252 KOG0478 DNA replication licens 97.8 9.6E-05 2.1E-09 80.0 9.5 133 160-311 463-616 (804)
253 PRK09361 radB DNA repair and r 97.8 6.6E-05 1.4E-09 71.6 7.5 40 154-193 18-60 (225)
254 PRK11361 acetoacetate metaboli 97.8 0.00013 2.8E-09 76.6 10.4 132 159-314 166-320 (457)
255 PHA02774 E1; Provisional 97.8 0.00027 5.8E-09 76.2 12.5 126 145-306 422-552 (613)
256 PLN03210 Resistant to P. syrin 97.8 0.00039 8.5E-09 81.7 15.0 31 156-186 204-234 (1153)
257 COG2204 AtoC Response regulato 97.7 6.9E-05 1.5E-09 79.0 7.7 120 159-303 164-298 (464)
258 TIGR01818 ntrC nitrogen regula 97.7 9.5E-05 2.1E-09 77.9 8.6 158 159-340 157-351 (463)
259 KOG2227 Pre-initiation complex 97.7 0.00037 8.1E-09 72.8 12.4 154 145-324 160-341 (529)
260 PRK00131 aroK shikimate kinase 97.7 4E-05 8.6E-10 69.2 4.8 33 158-190 3-35 (175)
261 PRK07132 DNA polymerase III su 97.7 0.00053 1.1E-08 68.9 13.0 130 157-319 16-160 (299)
262 PRK05818 DNA polymerase III su 97.7 0.00039 8.5E-09 68.3 11.4 125 157-310 5-147 (261)
263 cd01128 rho_factor Transcripti 97.7 0.00017 3.7E-09 70.6 8.9 80 157-236 14-117 (249)
264 PF13671 AAA_33: AAA domain; P 97.7 6.8E-05 1.5E-09 65.7 5.4 33 162-196 2-34 (143)
265 TIGR02012 tigrfam_recA protein 97.7 0.00028 6.1E-09 71.5 10.4 84 154-237 50-148 (321)
266 PRK07261 topology modulation p 97.7 0.00013 2.8E-09 67.2 7.3 41 161-201 2-42 (171)
267 PRK06067 flagellar accessory p 97.7 0.00027 5.8E-09 67.9 9.9 81 155-235 21-133 (234)
268 COG1241 MCM2 Predicted ATPase 97.7 0.00014 2.9E-09 80.0 8.6 143 160-322 320-484 (682)
269 cd01121 Sms Sms (bacterial rad 97.6 0.00047 1E-08 71.3 12.0 79 155-237 78-173 (372)
270 PRK10365 transcriptional regul 97.6 0.00069 1.5E-08 70.8 13.5 157 159-340 162-356 (441)
271 PF05707 Zot: Zonular occluden 97.6 7.2E-05 1.6E-09 70.1 5.4 121 161-306 2-142 (193)
272 PF03266 NTPase_1: NTPase; In 97.6 2.9E-05 6.3E-10 71.5 2.7 23 161-183 1-23 (168)
273 PF13191 AAA_16: AAA ATPase do 97.6 0.00015 3.4E-09 65.9 7.0 40 154-193 19-61 (185)
274 PRK13695 putative NTPase; Prov 97.6 0.00034 7.5E-09 64.1 9.2 23 161-183 2-24 (174)
275 PRK07276 DNA polymerase III su 97.6 0.001 2.2E-08 66.6 13.1 133 156-318 21-172 (290)
276 cd00983 recA RecA is a bacter 97.6 0.00048 1E-08 69.9 10.9 84 154-237 50-148 (325)
277 PRK13947 shikimate kinase; Pro 97.5 0.0003 6.5E-09 63.9 8.0 40 161-202 3-42 (171)
278 cd00561 CobA_CobO_BtuR ATP:cor 97.5 0.0007 1.5E-08 61.9 10.2 117 161-305 4-150 (159)
279 TIGR03877 thermo_KaiC_1 KaiC d 97.5 0.00088 1.9E-08 64.7 11.4 82 154-235 16-139 (237)
280 PRK08533 flagellar accessory p 97.5 0.00059 1.3E-08 65.9 10.0 38 155-192 20-60 (230)
281 PRK06762 hypothetical protein; 97.5 0.00023 4.9E-09 64.5 6.7 38 159-196 2-39 (166)
282 PRK04296 thymidine kinase; Pro 97.5 0.00071 1.5E-08 63.3 10.2 71 160-233 3-89 (190)
283 cd01394 radB RadB. The archaea 97.5 0.00094 2E-08 63.3 11.2 40 154-193 14-56 (218)
284 cd00984 DnaB_C DnaB helicase C 97.5 0.001 2.2E-08 63.8 11.5 38 155-192 9-50 (242)
285 PF06745 KaiC: KaiC; InterPro 97.5 0.00042 9.2E-09 66.1 8.8 81 154-234 14-127 (226)
286 TIGR01618 phage_P_loop phage n 97.5 0.0001 2.3E-09 70.8 4.5 23 158-180 11-33 (220)
287 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00063 1.4E-08 65.0 9.7 83 154-236 14-129 (235)
288 cd00227 CPT Chloramphenicol (C 97.5 0.00024 5.2E-09 65.2 6.5 34 160-193 3-36 (175)
289 PHA02624 large T antigen; Prov 97.5 0.001 2.3E-08 72.1 12.0 139 155-316 427-569 (647)
290 KOG1942 DNA helicase, TBP-inte 97.4 0.00014 2.9E-09 72.2 4.5 56 159-215 64-121 (456)
291 PRK03839 putative kinase; Prov 97.4 0.00012 2.6E-09 67.3 4.0 31 161-191 2-32 (180)
292 PLN02200 adenylate kinase fami 97.4 0.00016 3.5E-09 70.1 4.9 41 154-196 38-78 (234)
293 cd00464 SK Shikimate kinase (S 97.4 0.00014 3.1E-09 64.4 4.0 31 161-191 1-31 (154)
294 TIGR02688 conserved hypothetic 97.4 0.0023 5E-08 66.9 13.3 63 156-235 206-273 (449)
295 cd03283 ABC_MutS-like MutS-lik 97.4 0.001 2.2E-08 62.9 9.9 23 160-182 26-48 (199)
296 cd01393 recA_like RecA is a b 97.4 0.0011 2.4E-08 62.8 10.3 40 154-193 14-62 (226)
297 PRK09354 recA recombinase A; P 97.4 0.00056 1.2E-08 70.0 8.5 83 154-237 55-153 (349)
298 cd01131 PilT Pilus retraction 97.4 0.00036 7.7E-09 65.7 6.6 24 161-184 3-26 (198)
299 cd02021 GntK Gluconate kinase 97.4 0.00069 1.5E-08 60.2 8.1 28 162-189 2-29 (150)
300 TIGR00764 lon_rel lon-related 97.4 0.00019 4.1E-09 78.8 5.1 56 160-215 38-103 (608)
301 PRK00625 shikimate kinase; Pro 97.4 0.00018 4E-09 66.5 4.3 31 161-191 2-32 (173)
302 PRK14531 adenylate kinase; Pro 97.4 0.0002 4.2E-09 66.4 4.5 30 160-189 3-32 (183)
303 cd01122 GP4d_helicase GP4d_hel 97.4 0.00096 2.1E-08 65.3 9.5 38 155-192 26-67 (271)
304 TIGR01359 UMP_CMP_kin_fam UMP- 97.4 0.00017 3.7E-09 66.2 3.9 33 162-196 2-34 (183)
305 COG3604 FhlA Transcriptional r 97.3 0.00015 3.2E-09 76.4 3.7 166 157-344 244-444 (550)
306 KOG3347 Predicted nucleotide k 97.3 0.00015 3.3E-09 65.3 3.3 32 160-191 8-39 (176)
307 TIGR03878 thermo_KaiC_2 KaiC d 97.3 0.002 4.3E-08 63.3 11.5 81 155-235 32-144 (259)
308 PRK08233 hypothetical protein; 97.3 0.00087 1.9E-08 61.1 8.3 33 159-191 3-36 (182)
309 PRK14532 adenylate kinase; Pro 97.3 0.0002 4.3E-09 66.3 4.1 34 161-196 2-35 (188)
310 PRK05986 cob(I)alamin adenolsy 97.3 0.0014 3E-08 61.7 9.7 119 160-306 23-171 (191)
311 cd02027 APSK Adenosine 5'-phos 97.3 0.00071 1.5E-08 60.8 7.3 34 162-195 2-38 (149)
312 TIGR01313 therm_gnt_kin carboh 97.3 0.00066 1.4E-08 61.3 7.1 32 162-195 1-32 (163)
313 TIGR00767 rho transcription te 97.3 0.00089 1.9E-08 69.6 8.6 79 158-236 167-269 (415)
314 KOG1051 Chaperone HSP104 and r 97.3 0.0011 2.3E-08 74.9 9.7 137 160-321 209-363 (898)
315 cd02020 CMPK Cytidine monophos 97.3 0.00025 5.5E-09 62.2 3.9 30 162-191 2-31 (147)
316 PRK13948 shikimate kinase; Pro 97.3 0.0006 1.3E-08 63.6 6.4 35 157-191 8-42 (182)
317 PRK05800 cobU adenosylcobinami 97.3 0.0018 4E-08 59.7 9.5 34 161-194 3-36 (170)
318 TIGR00416 sms DNA repair prote 97.2 0.0033 7.2E-08 66.8 12.6 82 155-236 90-184 (454)
319 PRK13949 shikimate kinase; Pro 97.2 0.00029 6.3E-09 64.8 4.0 31 161-191 3-33 (169)
320 KOG0480 DNA replication licens 97.2 0.00036 7.8E-09 75.2 5.1 142 159-322 378-543 (764)
321 cd01428 ADK Adenylate kinase ( 97.2 0.00028 6.1E-09 65.1 3.9 33 162-196 2-34 (194)
322 PTZ00088 adenylate kinase 1; P 97.2 0.00036 7.8E-09 67.5 4.7 38 157-196 4-41 (229)
323 cd03281 ABC_MSH5_euk MutS5 hom 97.2 0.0033 7.1E-08 60.0 11.3 23 159-181 29-51 (213)
324 PF04665 Pox_A32: Poxvirus A32 97.2 0.006 1.3E-07 59.4 13.1 138 156-321 10-170 (241)
325 TIGR03880 KaiC_arch_3 KaiC dom 97.2 0.0025 5.5E-08 60.7 10.4 80 155-234 12-119 (224)
326 TIGR03574 selen_PSTK L-seryl-t 97.2 0.0007 1.5E-08 65.8 6.6 34 162-195 2-38 (249)
327 PRK14527 adenylate kinase; Pro 97.2 0.00031 6.8E-09 65.4 4.0 32 157-188 4-35 (191)
328 PHA02530 pseT polynucleotide k 97.2 0.00098 2.1E-08 66.2 7.8 36 159-195 2-37 (300)
329 PRK06547 hypothetical protein; 97.2 0.00039 8.4E-09 64.3 4.5 41 157-199 13-53 (172)
330 PRK06696 uridine kinase; Valid 97.2 0.00083 1.8E-08 64.3 6.9 41 156-196 19-62 (223)
331 COG0563 Adk Adenylate kinase a 97.2 0.00034 7.4E-09 65.1 4.1 34 161-196 2-35 (178)
332 PRK06217 hypothetical protein; 97.2 0.00038 8.2E-09 64.5 4.1 31 161-191 3-33 (183)
333 PF05272 VirE: Virulence-assoc 97.2 0.0018 3.8E-08 61.3 8.6 30 153-182 46-75 (198)
334 PF14516 AAA_35: AAA-like doma 97.2 0.029 6.4E-07 57.1 18.1 165 159-342 31-233 (331)
335 TIGR00708 cobA cob(I)alamin ad 97.2 0.0028 6.2E-08 58.7 9.6 118 161-306 7-153 (173)
336 PRK14530 adenylate kinase; Pro 97.2 0.00042 9.2E-09 65.8 4.3 29 161-189 5-33 (215)
337 PRK04328 hypothetical protein; 97.1 0.0019 4.1E-08 63.1 8.8 38 155-192 19-59 (249)
338 TIGR02858 spore_III_AA stage I 97.1 0.00077 1.7E-08 66.8 6.1 25 160-184 112-136 (270)
339 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00048 1E-08 63.1 4.4 29 160-188 4-32 (188)
340 COG3854 SpoIIIAA ncharacterize 97.1 0.00099 2.1E-08 64.2 6.4 76 159-234 137-230 (308)
341 COG1102 Cmk Cytidylate kinase 97.1 0.00044 9.5E-09 63.2 3.6 27 162-188 3-29 (179)
342 PRK05537 bifunctional sulfate 97.1 0.0026 5.7E-08 69.3 10.3 69 128-197 362-434 (568)
343 PRK12608 transcription termina 97.1 0.0014 3E-08 67.7 7.6 77 160-236 134-234 (380)
344 TIGR02236 recomb_radA DNA repa 97.1 0.0023 5E-08 64.2 9.1 40 155-194 91-139 (310)
345 PRK05973 replicative DNA helic 97.1 0.0092 2E-07 58.1 12.9 38 155-192 60-100 (237)
346 PRK04040 adenylate kinase; Pro 97.1 0.00061 1.3E-08 63.8 4.5 29 159-187 2-32 (188)
347 cd00544 CobU Adenosylcobinamid 97.1 0.003 6.4E-08 58.3 9.0 73 162-237 2-88 (169)
348 PRK09519 recA DNA recombinatio 97.1 0.0018 3.9E-08 72.5 8.8 84 154-237 55-153 (790)
349 PF00448 SRP54: SRP54-type pro 97.1 0.0017 3.6E-08 61.3 7.4 34 159-192 1-37 (196)
350 TIGR01420 pilT_fam pilus retra 97.1 0.0013 2.8E-08 67.3 7.1 68 160-231 123-204 (343)
351 COG0703 AroK Shikimate kinase 97.0 0.00052 1.1E-08 63.4 3.7 32 160-191 3-34 (172)
352 cd03238 ABC_UvrA The excision 97.0 0.0052 1.1E-07 57.0 10.4 27 156-182 18-44 (176)
353 PRK04301 radA DNA repair and r 97.0 0.0047 1E-07 62.4 10.9 40 155-194 98-146 (317)
354 PRK14528 adenylate kinase; Pro 97.0 0.00065 1.4E-08 63.3 4.3 29 161-189 3-31 (186)
355 PRK03731 aroL shikimate kinase 97.0 0.0007 1.5E-08 61.6 4.4 30 161-190 4-33 (171)
356 PRK13946 shikimate kinase; Pro 97.0 0.00057 1.2E-08 63.4 3.9 34 158-191 9-42 (184)
357 PRK02496 adk adenylate kinase; 97.0 0.00059 1.3E-08 63.0 3.8 29 161-189 3-31 (184)
358 COG4619 ABC-type uncharacteriz 97.0 0.0028 6E-08 58.6 7.9 26 157-182 27-52 (223)
359 TIGR03881 KaiC_arch_4 KaiC dom 97.0 0.0096 2.1E-07 56.8 12.2 38 155-192 16-56 (229)
360 PF06414 Zeta_toxin: Zeta toxi 97.0 0.0026 5.5E-08 59.8 8.0 44 156-199 12-56 (199)
361 TIGR01351 adk adenylate kinase 97.0 0.00063 1.4E-08 64.4 3.8 28 162-189 2-29 (210)
362 PF13245 AAA_19: Part of AAA d 97.0 0.0013 2.7E-08 52.7 4.9 34 160-193 11-51 (76)
363 PRK00279 adk adenylate kinase; 97.0 0.00072 1.6E-08 64.2 4.1 34 161-196 2-35 (215)
364 COG4650 RtcR Sigma54-dependent 97.0 0.0014 3.1E-08 65.1 6.1 74 159-236 208-296 (531)
365 cd00046 DEXDc DEAD-like helica 97.0 0.00086 1.9E-08 56.6 4.1 24 161-184 2-25 (144)
366 PF09848 DUF2075: Uncharacteri 97.0 0.0017 3.6E-08 66.6 6.9 77 161-237 3-98 (352)
367 KOG2383 Predicted ATPase [Gene 97.0 0.0024 5.2E-08 65.8 7.8 27 156-182 111-137 (467)
368 PF01583 APS_kinase: Adenylyls 96.9 0.0039 8.4E-08 56.9 8.3 41 159-199 2-45 (156)
369 PRK05057 aroK shikimate kinase 96.9 0.00099 2.1E-08 61.3 4.5 34 159-192 4-37 (172)
370 COG1936 Predicted nucleotide k 96.9 0.00073 1.6E-08 62.3 3.3 30 161-191 2-31 (180)
371 PRK14722 flhF flagellar biosyn 96.9 0.001 2.3E-08 68.7 4.8 27 156-182 134-160 (374)
372 PRK15455 PrkA family serine pr 96.9 0.0024 5.2E-08 69.1 7.6 35 158-192 102-137 (644)
373 PRK08154 anaerobic benzoate ca 96.9 0.0018 3.9E-08 65.2 6.4 57 134-191 108-165 (309)
374 COG5271 MDN1 AAA ATPase contai 96.9 0.0034 7.4E-08 73.8 9.0 150 157-323 1541-1705(4600)
375 cd03115 SRP The signal recogni 96.9 0.0049 1.1E-07 56.2 8.6 33 161-193 2-37 (173)
376 TIGR02238 recomb_DMC1 meiotic 96.9 0.0086 1.9E-07 60.6 11.1 83 155-237 92-206 (313)
377 PLN03187 meiotic recombination 96.9 0.011 2.5E-07 60.5 12.0 82 155-237 122-236 (344)
378 smart00534 MUTSac ATPase domai 96.9 0.0092 2E-07 55.4 10.5 20 162-181 2-21 (185)
379 PRK01184 hypothetical protein; 96.9 0.0011 2.3E-08 61.2 4.1 30 160-190 2-31 (184)
380 PRK14974 cell division protein 96.9 0.0093 2E-07 60.9 11.3 37 157-193 138-177 (336)
381 PF08433 KTI12: Chromatin asso 96.9 0.0027 5.9E-08 62.9 7.2 73 162-235 4-83 (270)
382 COG4088 Predicted nucleotide k 96.9 0.0011 2.4E-08 62.9 4.2 25 161-185 3-27 (261)
383 PF00406 ADK: Adenylate kinase 96.8 0.00088 1.9E-08 59.9 3.3 31 164-196 1-31 (151)
384 TIGR01425 SRP54_euk signal rec 96.8 0.0089 1.9E-07 62.9 11.2 37 157-193 98-137 (429)
385 COG1373 Predicted ATPase (AAA+ 96.8 0.016 3.5E-07 60.5 13.0 68 161-234 39-106 (398)
386 PF13481 AAA_25: AAA domain; P 96.8 0.0033 7.2E-08 58.0 7.1 24 160-183 33-56 (193)
387 PRK00771 signal recognition pa 96.8 0.0095 2.1E-07 63.0 11.3 38 157-194 93-133 (437)
388 PF01078 Mg_chelatase: Magnesi 96.8 0.00092 2E-08 63.5 3.3 25 159-183 22-46 (206)
389 PLN02674 adenylate kinase 96.8 0.0013 2.7E-08 64.3 4.3 38 157-196 29-66 (244)
390 PRK09302 circadian clock prote 96.8 0.0077 1.7E-07 64.7 10.8 82 155-236 27-144 (509)
391 COG3283 TyrR Transcriptional r 96.8 0.0022 4.8E-08 65.3 6.1 98 162-288 230-344 (511)
392 COG3284 AcoR Transcriptional a 96.8 0.0016 3.5E-08 70.3 5.5 168 160-346 337-530 (606)
393 cd03216 ABC_Carb_Monos_I This 96.8 0.0063 1.4E-07 55.3 8.6 28 156-183 23-50 (163)
394 cd00267 ABC_ATPase ABC (ATP-bi 96.8 0.0068 1.5E-07 54.4 8.8 28 157-184 23-50 (157)
395 PRK04182 cytidylate kinase; Pr 96.8 0.0013 2.8E-08 59.8 4.1 29 161-189 2-30 (180)
396 cd01130 VirB11-like_ATPase Typ 96.8 0.0041 8.9E-08 57.8 7.5 69 159-231 25-109 (186)
397 PF13238 AAA_18: AAA domain; P 96.8 0.0011 2.5E-08 56.3 3.5 22 162-183 1-22 (129)
398 cd03243 ABC_MutS_homologs The 96.8 0.0091 2E-07 56.1 9.9 23 159-181 29-51 (202)
399 PF13086 AAA_11: AAA domain; P 96.8 0.0011 2.3E-08 62.1 3.5 23 161-183 19-41 (236)
400 PRK14737 gmk guanylate kinase; 96.7 0.0028 6.1E-08 59.2 6.0 26 158-183 3-28 (186)
401 TIGR00455 apsK adenylylsulfate 96.7 0.0077 1.7E-07 55.6 8.9 40 157-196 16-58 (184)
402 PRK05541 adenylylsulfate kinas 96.7 0.0018 3.9E-08 59.3 4.5 28 157-184 5-32 (176)
403 PLN02459 probable adenylate ki 96.7 0.002 4.4E-08 63.4 5.1 38 157-196 27-64 (261)
404 PRK10867 signal recognition pa 96.7 0.013 2.8E-07 61.9 11.4 37 157-193 98-138 (433)
405 PF13604 AAA_30: AAA domain; P 96.7 0.0055 1.2E-07 57.6 7.8 34 160-193 19-55 (196)
406 TIGR00150 HI0065_YjeE ATPase, 96.7 0.0038 8.2E-08 55.5 6.3 30 157-186 20-49 (133)
407 TIGR02525 plasmid_TraJ plasmid 96.7 0.0036 7.9E-08 64.8 7.1 68 161-232 151-235 (372)
408 TIGR00064 ftsY signal recognit 96.7 0.0078 1.7E-07 59.7 9.2 38 156-193 69-109 (272)
409 COG1066 Sms Predicted ATP-depe 96.7 0.011 2.4E-07 61.4 10.3 101 156-260 90-207 (456)
410 TIGR02782 TrbB_P P-type conjug 96.7 0.0028 6.2E-08 63.6 6.0 70 159-232 132-214 (299)
411 cd02019 NK Nucleoside/nucleoti 96.7 0.0028 6E-08 49.4 4.7 31 162-192 2-33 (69)
412 PRK14526 adenylate kinase; Pro 96.7 0.0017 3.6E-08 62.1 4.0 34 161-196 2-35 (211)
413 COG5245 DYN1 Dynein, heavy cha 96.7 0.0052 1.1E-07 71.7 8.4 172 158-352 1493-1689(3164)
414 PF07693 KAP_NTPase: KAP famil 96.7 0.021 4.6E-07 57.0 12.2 35 152-186 13-47 (325)
415 TIGR02173 cyt_kin_arch cytidyl 96.7 0.0018 4E-08 58.3 4.1 29 161-189 2-30 (171)
416 KOG2543 Origin recognition com 96.7 0.037 8.1E-07 57.0 13.8 93 143-235 14-128 (438)
417 PRK04841 transcriptional regul 96.7 0.032 6.9E-07 63.5 15.0 34 158-192 31-64 (903)
418 cd03284 ABC_MutS1 MutS1 homolo 96.7 0.012 2.6E-07 56.2 9.8 22 160-181 31-52 (216)
419 PF13521 AAA_28: AAA domain; P 96.6 0.0016 3.5E-08 58.9 3.5 26 162-188 2-27 (163)
420 PRK13764 ATPase; Provisional 96.6 0.0028 6E-08 69.3 5.9 26 159-184 257-282 (602)
421 PRK12339 2-phosphoglycerate ki 96.6 0.0021 4.6E-08 60.7 4.4 30 158-187 2-31 (197)
422 cd01125 repA Hexameric Replica 96.6 0.015 3.3E-07 56.0 10.5 21 162-182 4-24 (239)
423 PTZ00035 Rad51 protein; Provis 96.6 0.018 3.8E-07 58.9 11.3 82 155-237 114-228 (337)
424 cd03282 ABC_MSH4_euk MutS4 hom 96.6 0.019 4E-07 54.5 10.7 25 158-182 28-52 (204)
425 PRK03846 adenylylsulfate kinas 96.6 0.0081 1.8E-07 56.3 8.2 39 157-195 22-63 (198)
426 COG1116 TauB ABC-type nitrate/ 96.6 0.0054 1.2E-07 59.7 7.0 26 157-182 27-52 (248)
427 cd03222 ABC_RNaseL_inhibitor T 96.6 0.0082 1.8E-07 55.7 8.0 77 156-235 22-102 (177)
428 PRK05480 uridine/cytidine kina 96.6 0.0033 7.2E-08 59.2 5.5 38 157-194 4-42 (209)
429 PF13479 AAA_24: AAA domain 96.6 0.0043 9.3E-08 59.1 6.2 71 158-234 2-80 (213)
430 PRK13900 type IV secretion sys 96.6 0.0043 9.3E-08 63.3 6.6 71 158-232 159-245 (332)
431 PRK13975 thymidylate kinase; P 96.6 0.0038 8.3E-08 57.8 5.7 28 160-187 3-30 (196)
432 PF00437 T2SE: Type II/IV secr 96.6 0.0037 8E-08 61.3 5.7 71 158-232 126-207 (270)
433 PRK12338 hypothetical protein; 96.6 0.0025 5.4E-08 64.5 4.5 31 158-188 3-33 (319)
434 cd03280 ABC_MutS2 MutS2 homolo 96.6 0.016 3.6E-07 54.3 9.9 22 160-181 29-50 (200)
435 KOG0477 DNA replication licens 96.5 0.0013 2.8E-08 70.8 2.5 129 160-316 483-643 (854)
436 PF08423 Rad51: Rad51; InterP 96.5 0.0066 1.4E-07 59.6 7.3 83 155-237 34-148 (256)
437 PLN03186 DNA repair protein RA 96.5 0.013 2.8E-07 60.0 9.7 83 155-237 119-233 (342)
438 PF01443 Viral_helicase1: Vira 96.5 0.00088 1.9E-08 63.6 1.1 22 162-183 1-22 (234)
439 cd03227 ABC_Class2 ABC-type Cl 96.5 0.014 3E-07 53.0 8.7 24 159-182 21-44 (162)
440 PRK00889 adenylylsulfate kinas 96.5 0.004 8.6E-08 56.9 5.1 36 158-193 3-41 (175)
441 TIGR02788 VirB11 P-type DNA tr 96.5 0.005 1.1E-07 62.0 6.1 72 157-232 142-228 (308)
442 PRK14529 adenylate kinase; Pro 96.5 0.0024 5.2E-08 61.6 3.6 35 161-197 2-36 (223)
443 PRK13833 conjugal transfer pro 96.5 0.0046 9.9E-08 62.8 5.8 70 159-232 144-225 (323)
444 TIGR01526 nadR_NMN_Atrans nico 96.5 0.0059 1.3E-07 62.1 6.6 34 160-193 163-196 (325)
445 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.4 0.008 1.7E-07 53.6 6.6 75 156-235 23-101 (144)
446 TIGR03499 FlhF flagellar biosy 96.4 0.01 2.2E-07 59.1 7.9 38 157-194 192-234 (282)
447 TIGR02239 recomb_RAD51 DNA rep 96.4 0.014 3.1E-07 59.1 9.0 83 155-237 92-206 (316)
448 TIGR00959 ffh signal recogniti 96.4 0.028 6.1E-07 59.3 11.5 37 157-193 97-137 (428)
449 cd03287 ABC_MSH3_euk MutS3 hom 96.4 0.026 5.7E-07 54.3 10.3 24 158-181 30-53 (222)
450 cd03247 ABCC_cytochrome_bd The 96.4 0.015 3.3E-07 53.4 8.4 28 156-183 25-52 (178)
451 PRK13894 conjugal transfer ATP 96.4 0.0057 1.2E-07 62.0 5.9 70 159-232 148-229 (319)
452 PF01745 IPT: Isopentenyl tran 96.4 0.005 1.1E-07 58.8 4.9 38 161-198 3-40 (233)
453 TIGR02655 circ_KaiC circadian 96.3 0.017 3.7E-07 61.9 9.6 38 155-192 17-58 (484)
454 COG2274 SunT ABC-type bacterio 96.3 0.0037 8E-08 69.7 4.7 23 160-182 500-522 (709)
455 PF05970 PIF1: PIF1-like helic 96.3 0.0041 9E-08 64.1 4.7 29 157-185 20-48 (364)
456 PRK04220 2-phosphoglycerate ki 96.3 0.0047 1E-07 62.0 4.9 33 155-187 88-120 (301)
457 cd03228 ABCC_MRP_Like The MRP 96.3 0.016 3.5E-07 52.9 8.0 28 156-183 25-52 (171)
458 TIGR02655 circ_KaiC circadian 96.3 0.018 3.9E-07 61.7 9.6 82 155-236 259-367 (484)
459 COG0194 Gmk Guanylate kinase [ 96.3 0.014 3E-07 54.6 7.5 25 159-183 4-28 (191)
460 KOG2228 Origin recognition com 96.3 0.0098 2.1E-07 60.3 6.9 139 159-321 49-219 (408)
461 KOG0482 DNA replication licens 96.3 0.00048 1E-08 72.5 -2.4 146 157-320 373-538 (721)
462 PRK10416 signal recognition pa 96.3 0.019 4.1E-07 58.2 9.0 37 157-193 112-151 (318)
463 PRK13851 type IV secretion sys 96.3 0.0069 1.5E-07 62.1 5.8 71 158-232 161-246 (344)
464 PRK05439 pantothenate kinase; 96.2 0.0072 1.6E-07 61.1 5.7 50 146-195 73-127 (311)
465 COG0606 Predicted ATPase with 96.2 0.0023 5.1E-08 67.3 2.1 47 135-182 175-221 (490)
466 cd02022 DPCK Dephospho-coenzym 96.2 0.0048 1E-07 57.0 3.9 32 162-196 2-33 (179)
467 cd01129 PulE-GspE PulE/GspE Th 96.2 0.0084 1.8E-07 59.2 5.9 73 160-232 81-159 (264)
468 TIGR00554 panK_bact pantothena 96.2 0.0079 1.7E-07 60.2 5.6 38 147-184 50-87 (290)
469 PRK13808 adenylate kinase; Pro 96.2 0.0046 1E-07 63.0 3.9 33 162-196 3-35 (333)
470 PRK08099 bifunctional DNA-bind 96.2 0.01 2.2E-07 62.1 6.5 31 159-189 219-249 (399)
471 cd00071 GMPK Guanosine monopho 96.2 0.022 4.8E-07 50.4 7.8 25 162-186 2-26 (137)
472 PF01580 FtsK_SpoIIIE: FtsK/Sp 96.1 0.012 2.5E-07 55.3 6.3 33 161-193 40-79 (205)
473 PRK10078 ribose 1,5-bisphospho 96.1 0.0051 1.1E-07 57.0 3.7 28 160-187 3-30 (186)
474 cd02028 UMPK_like Uridine mono 96.1 0.0066 1.4E-07 56.3 4.5 35 162-196 2-39 (179)
475 PF09439 SRPRB: Signal recogni 96.1 0.011 2.5E-07 55.1 5.9 24 159-182 3-26 (181)
476 PRK08356 hypothetical protein; 96.1 0.0063 1.4E-07 56.9 4.3 32 160-194 6-37 (195)
477 COG4178 ABC-type uncharacteriz 96.1 0.021 4.5E-07 62.3 8.6 27 156-182 416-442 (604)
478 PRK09302 circadian clock prote 96.1 0.035 7.5E-07 59.7 10.4 82 155-236 269-377 (509)
479 cd03230 ABC_DR_subfamily_A Thi 96.1 0.02 4.3E-07 52.4 7.4 27 157-183 24-50 (173)
480 PF00485 PRK: Phosphoribulokin 96.1 0.0057 1.2E-07 57.1 3.9 24 161-184 1-24 (194)
481 COG0529 CysC Adenylylsulfate k 96.1 0.024 5.2E-07 52.7 7.8 60 156-215 20-89 (197)
482 PLN02199 shikimate kinase 96.1 0.0067 1.5E-07 60.8 4.4 33 159-191 102-134 (303)
483 PRK00091 miaA tRNA delta(2)-is 96.1 0.0069 1.5E-07 61.2 4.6 34 159-192 4-37 (307)
484 PF03796 DnaB_C: DnaB-like hel 96.0 0.067 1.5E-06 52.2 11.4 38 155-192 15-56 (259)
485 TIGR00750 lao LAO/AO transport 96.0 0.031 6.7E-07 56.0 9.2 29 155-183 30-58 (300)
486 PTZ00202 tuzin; Provisional 96.0 0.04 8.7E-07 58.2 10.0 44 150-193 277-320 (550)
487 COG2804 PulE Type II secretory 96.0 0.019 4.2E-07 61.0 7.8 75 157-231 255-336 (500)
488 PRK14730 coaE dephospho-CoA ki 96.0 0.0072 1.6E-07 56.9 4.2 34 161-196 3-36 (195)
489 PRK00300 gmk guanylate kinase; 96.0 0.007 1.5E-07 56.6 4.1 27 158-184 4-30 (205)
490 TIGR00665 DnaB replicative DNA 96.0 0.052 1.1E-06 57.1 11.0 38 155-192 191-232 (434)
491 TIGR00235 udk uridine kinase. 96.0 0.0065 1.4E-07 57.3 3.8 28 158-185 5-32 (207)
492 cd02024 NRK1 Nicotinamide ribo 96.0 0.0064 1.4E-07 57.1 3.6 27 162-188 2-29 (187)
493 TIGR02322 phosphon_PhnN phosph 96.0 0.0059 1.3E-07 55.9 3.4 25 161-185 3-27 (179)
494 PF12780 AAA_8: P-loop contain 96.0 0.043 9.4E-07 54.3 9.7 87 138-232 12-99 (268)
495 smart00072 GuKc Guanylate kina 96.0 0.018 3.8E-07 53.4 6.6 25 159-183 2-26 (184)
496 cd03246 ABCC_Protease_Secretio 96.0 0.046 9.9E-07 50.0 9.2 27 157-183 26-52 (173)
497 PLN02165 adenylate isopentenyl 95.9 0.0075 1.6E-07 61.4 4.2 33 159-191 43-75 (334)
498 PRK14733 coaE dephospho-CoA ki 95.9 0.0083 1.8E-07 57.1 4.3 32 158-189 5-36 (204)
499 PRK12723 flagellar biosynthesi 95.9 0.033 7.2E-07 58.0 9.1 37 157-193 172-215 (388)
500 TIGR00017 cmk cytidylate kinas 95.9 0.0086 1.9E-07 57.4 4.4 29 160-188 3-31 (217)
No 1
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=3.3e-94 Score=719.02 Aligned_cols=410 Identities=74% Similarity=1.135 Sum_probs=389.1
Q ss_pred ccccccccccccCCCCccccCcccccccccccccccccccccccceeEEEeehhhhhhhhhhcccccccccccccccccC
Q 013704 9 GAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITR 88 (438)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (438)
+++++ .++++++++++++.|.++|||..+++.......+.......+.+++.+++||+++|+|+++++|++++||+|++
T Consensus 2 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 80 (413)
T PLN00020 2 GAVNR-ASLSLSAVASGASSPPSSAFLGSKVKVSSRRTSSARKSKSSVPVSEEDESKQSEQSSWRGLAQDISGDDYDITR 80 (413)
T ss_pred ccccc-cccccCCCccCCCCCCchhcccccccccccccccccccccccccccccccccccccchhccccccccchhhhhh
Confidence 56676 88999999999999999999999999865555555566667788899999999999999999999999999999
Q ss_pred CCcchhhccccccCCCchhhhhcccccchhhhhccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCC
Q 013704 89 GKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGK 168 (438)
Q Consensus 89 ~~~~~d~lf~~~~~~g~~~~i~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPP 168 (438)
|+||||+||++++|+|+|.+|+++++|+ .+.++|+|+.++||++|+|+|++..|++|||+..+++++|+++||||||
T Consensus 81 g~g~vd~lf~~~~~~g~~~~i~~~~~~~---~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPP 157 (413)
T PLN00020 81 GKGMVDSLFQGPFGLGTDSDIASSYDYL---QRTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGK 157 (413)
T ss_pred cCCchhhhhcCCccCCcchhhhhhhHHH---hhhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCC
Confidence 9999999999999999999999999887 6777889999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHH-HhCCceeEEeccccccccCCCCCccccch
Q 013704 169 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII-KKGKMCCLFINDLDAGAGRMGGTTQYTVN 247 (438)
Q Consensus 169 GtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~-~~~~p~ILfIDEiD~l~~~r~~~~~~~~~ 247 (438)
|||||++|++||+++|++|+.+++++|.++|+||++++||++|+.|.+.+ ++.+||||||||||+++++++ .++.+++
T Consensus 158 GcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~-~~~~tv~ 236 (413)
T PLN00020 158 GQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFG-TTQYTVN 236 (413)
T ss_pred CCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCC-CCCcchH
Confidence 99999999999999999999999999999999999999999999998777 478999999999999999987 4788899
Q ss_pred hHHHHHHHHHhhcCCCccccCCcc-ccCCCCCceEEEecCCCCCCCccccCCCcceEEEecCCHHHHHHHHHhhhCCCCC
Q 013704 248 NQMVNATLMNIADNPTNVQLPGMY-NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNV 326 (438)
Q Consensus 248 ~~~v~~~Ll~Lld~~~~v~ldg~~-~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~lP~~e~R~~Il~~~l~~~~v 326 (438)
+|+++++||+++|+|++|+++|.| ..+...+|+||+|||+|+.||+||+|+||||++|++|+.++|.+||+.++++.++
T Consensus 237 ~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i~lPd~e~R~eIL~~~~r~~~l 316 (413)
T PLN00020 237 NQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVVHGIFRDDGV 316 (413)
T ss_pred HHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCceeCCCCHHHHHHHHHHHhccCCC
Confidence 999999999999999999999998 5567789999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHHHhHHhHHHHHHHHhcCCCCCCCCCCccccHHHHHHHHhhhhhhHH
Q 013704 327 PKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQE 406 (438)
Q Consensus 327 ~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~i~~~~~e~i~~~~~~~~~~~p~f~~~~~~~~~ll~~~~~lv~eq~ 406 (438)
+..++.++++.|+|++||||||+|+++|++++++||.+.|+++++++++++++++|+|++|.++++.|+++|+++++||+
T Consensus 317 ~~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~~g~~~~~~~l~~~~~~~p~f~~~~~t~~~l~~~g~~l~~eq~ 396 (413)
T PLN00020 317 SREDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAEVGVENLGKKLVNSKKGPPTFEPPKMTLEKLLEYGNMLVREQE 396 (413)
T ss_pred CHHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccC
Q 013704 407 NVKRVQLADKYLSEAAL 423 (438)
Q Consensus 407 ~v~~~~l~~~y~~~~~l 423 (438)
+|++++|+++||+++++
T Consensus 397 ~v~~~~l~~~y~~~~~~ 413 (413)
T PLN00020 397 NVKRVQLSDEYLKNAAL 413 (413)
T ss_pred HHHHHHHHHHHHHhccC
Confidence 99999999999999875
No 2
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-61 Score=469.47 Aligned_cols=372 Identities=26% Similarity=0.342 Sum_probs=324.5
Q ss_pred CcceeeecccccccccccccCCCCcc-ccC--ccccccccccccccccccc-ccccceeEEEeehhh----hhhhhhhcc
Q 013704 1 MAAVVSTVGAVNNALPLKINGSSRFS-LVP--SSVFLGKSLKKVSSKVSQQ-RILSKSFKVVSEYDE----EKQTSQDRW 72 (438)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~ 72 (438)
|++..+++++.++ .||..|+|++++ ..+ .+.|+++..-|+..-..+- ++-.+.++|.....+ -|+|+..||
T Consensus 1 ~~~~~~~al~~~r-~~L~~~~~~~~~lka~~~~~r~l~k~~~ksend~kslqsvg~~~gevlk~l~~~~~iVK~s~Gpry 79 (388)
T KOG0651|consen 1 MMAERNKALAEYR-KPLLSHRSISSALKALRENSRFLGKKYDKSENDLKSLQSVGQIIGEVLKQLEDEKFIVKASSGPRY 79 (388)
T ss_pred CchHHHHHHHHhh-hhhhhccchhhHHHhHHHHHHHHhhhcCcccchHHHhhhcCchhHHHHhhccccceEeecCCCCcE
Confidence 5667788888888 899999999887 455 7888988777664333222 222234555543222 389999999
Q ss_pred cccccccccccccccCCCcchhhccccccCCCchhhhhcccccchhhhhccccccccCCCCCChhhHHHHHHHHHHhhhc
Q 013704 73 AGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLN 152 (438)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~d~lf~~~~~~g~~~~i~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~ 152 (438)
- ..|+.|.|+++|++|++|+.++|+-+++.+.+.++...|+|.++..|+++|+++.+.+|+.|+|+|++.+|+.++++.
T Consensus 80 v-vg~~~~~D~~~i~~G~rv~ldittltIm~~lprevd~vy~m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf 158 (388)
T KOG0651|consen 80 V-VGCRRSVDKEKIARGTRVVLDITTLTIMRGLPREVDLVYNMSHEDPRNISFENVGGLFYQIRELREVIELPLTNPELF 158 (388)
T ss_pred E-EEcccccchhhhccCceeeeeeeeeehhcccchHHHHHHHhhhcCccccCHHHhCChHHHHHHHHhheEeeccCchhc
Confidence 7 999999999999999999999999999988888888889999999999999999999999999999999999999999
Q ss_pred CC-CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccc
Q 013704 153 LP-NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDL 231 (438)
Q Consensus 153 ~~-~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEi 231 (438)
.+ |+++|+|+|||||||||||++|++||+.+|++|+.++++.+.++|.||+.++||+.|+.|+ .+.|||||+|||
T Consensus 159 ~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~----~~~pciifmdei 234 (388)
T KOG0651|consen 159 LRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAR----EVIPCIIFMDEI 234 (388)
T ss_pred cccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHh----hhCceEEeehhh
Confidence 87 9999999999999999999999999999999999999999999999999999999999998 899999999999
Q ss_pred cccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCC
Q 013704 232 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 309 (438)
Q Consensus 232 D~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~ 309 (438)
|++.+++. +++++++|+++.|||+|++ ||+|+ ....+|++|+|||+|++|||||+||||+|++|| +|+
T Consensus 235 DAigGRr~--se~Ts~dreiqrTLMeLln-----qmdgf---d~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpn 304 (388)
T KOG0651|consen 235 DAIGGRRF--SEGTSSDREIQRTLMELLN-----QMDGF---DTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPN 304 (388)
T ss_pred hhhccEEe--ccccchhHHHHHHHHHHHH-----hhccc---hhcccccEEEecCCccccchhhcCCccccceeccCCcc
Confidence 99999985 7999999999999999999 99999 888999999999999999999999999999999 589
Q ss_pred HHHHHHHHHhhhC----CCCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHHHhHHhHHHHHHHHhcCCCCCCCCC
Q 013704 310 REDRIGVCSGIFR----TDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFE 385 (438)
Q Consensus 310 ~e~R~~Il~~~l~----~~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~i~~~~~e~i~~~~~~~~~~~p~f~ 385 (438)
...|..|++..-. ...++.+.+.+++++|.|+++. ..|. ..|.|.
T Consensus 305 e~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~r---n~~t----------------------------Eag~Fa 353 (388)
T KOG0651|consen 305 EQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLR---NVCT----------------------------EAGMFA 353 (388)
T ss_pred hhhceeeEeeccccccccccccHHHHHHHHhccChHHHh---hhcc----------------------------cccccc
Confidence 9999998763332 2456677777777777777644 1111 235799
Q ss_pred CccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhc
Q 013704 386 QPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 419 (438)
Q Consensus 386 ~~~~~~~~ll~~~~~lv~eq~~v~~~~l~~~y~~ 419 (438)
.|..+.+.++|.+..+|++|..+++.+++.+|++
T Consensus 354 ~~~~~~~vl~Ed~~k~vrk~~~~kkle~~~~Y~~ 387 (388)
T KOG0651|consen 354 IPEERDEVLHEDFMKLVRKQADAKKLELSLDYKK 387 (388)
T ss_pred cchhhHHHhHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 9999999999999999999999999999999974
No 3
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-45 Score=362.00 Aligned_cols=209 Identities=22% Similarity=0.321 Sum_probs=191.5
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~ 233 (438)
-|+++|+|+|||||||||||+||+|+|++.++.|+.+.+++|..+|+|+..+++|++|+.|+ .++||||||||||+
T Consensus 180 ~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lAr----ekaPsIIFiDEIDA 255 (406)
T COG1222 180 LGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAR----EKAPSIIFIDEIDA 255 (406)
T ss_pred cCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHh----hcCCeEEEEechhh
Confidence 48999999999999999999999999999999999999999999999999999999999888 99999999999999
Q ss_pred cccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCHH
Q 013704 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 311 (438)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e 311 (438)
++.+|.+ ..+..++.|+.|+++|+. ||||+ ....+|-||+|||+++.|||||+||||||+.|+ +|+.+
T Consensus 256 Ig~kR~d--~~t~gDrEVQRTmleLL~-----qlDGF---D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~ 325 (406)
T COG1222 256 IGAKRFD--SGTSGDREVQRTMLELLN-----QLDGF---DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEE 325 (406)
T ss_pred hhccccc--CCCCchHHHHHHHHHHHH-----hccCC---CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHH
Confidence 9999874 445678999999999999 99999 889999999999999999999999999999999 59999
Q ss_pred HHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHH---HHhHHhHHHHHHHHhcCCC
Q 013704 312 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK---WISEVGIERIGKRLVNSKE 379 (438)
Q Consensus 312 ~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~---~i~~~~~e~i~~~~~~~~~ 379 (438)
.|.+||+.+..+ ++++++.++.++++++||+|. ++|..+-+-|+|+ .+++.++.....+++....
T Consensus 326 gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlk---aictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~~~~ 397 (406)
T COG1222 326 GRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLK---AICTEAGMFAIRERRDEVTMEDFLKAVEKVVKKKK 397 (406)
T ss_pred HHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHH---HHHHHHhHHHHHhccCeecHHHHHHHHHHHHhccc
Confidence 999999966654 789999999999999999999 8888888888765 5566688888888876554
No 4
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-42 Score=360.65 Aligned_cols=247 Identities=23% Similarity=0.337 Sum_probs=206.9
Q ss_pred CCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 013704 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (438)
Q Consensus 153 ~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (438)
..|+..|.|+|||||||||||+||+|+|++.|++|+.+.+++|.++|+||+++.+|++|.+|+ .++||||||||+|
T Consensus 539 ~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR----~saPCVIFFDEiD 614 (802)
T KOG0733|consen 539 ALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRAR----ASAPCVIFFDEID 614 (802)
T ss_pred HhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhh----cCCCeEEEecchh
Confidence 458899999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred ccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCH
Q 013704 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 310 (438)
Q Consensus 233 ~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~ 310 (438)
+++++|+. ....+..|.|+++|. +|||. +.+.+|.||++||||+.||||++||||||+.++ +|+.
T Consensus 615 aL~p~R~~-~~s~~s~RvvNqLLt---------ElDGl---~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~ 681 (802)
T KOG0733|consen 615 ALVPRRSD-EGSSVSSRVVNQLLT---------ELDGL---EERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNA 681 (802)
T ss_pred hcCcccCC-CCchhHHHHHHHHHH---------Hhccc---ccccceEEEeecCCCcccchhhcCCCccCceeeecCCCH
Confidence 99999874 334556677776664 47888 888999999999999999999999999999999 6999
Q ss_pred HHHHHHHHhhhCC------CCCCHHHHHHHHc--cCCcchhHHHHHHHHhhhhHHHHHHHhHHhHH--HHHHHHhcCCCC
Q 013704 311 EDRIGVCSGIFRT------DNVPKEDIVKLVD--TFPGQSIDFFGALRARVYDDEVRKWISEVGIE--RIGKRLVNSKEG 380 (438)
Q Consensus 311 e~R~~Il~~~l~~------~~v~~~~la~l~~--~~sgadi~~~~al~~~~~~~air~~i~~~~~e--~i~~~~~~~~~~ 380 (438)
++|.+||+.+.+. .+|+++.|+..++ +|+|+||. +|++.+...++++.+.+.+.. ++..+.
T Consensus 682 ~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLa---aLvreAsi~AL~~~~~~~~~~~~~~~~~~------ 752 (802)
T KOG0733|consen 682 EERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLA---ALVREASILALRESLFEIDSSEDDVTVRS------ 752 (802)
T ss_pred HHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHH---HHHHHHHHHHHHHHHhhccccCcccceee------
Confidence 9999999988882 6788999999877 99999999 999999988888877643211 111000
Q ss_pred CCCCCCccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccccCCCC
Q 013704 381 PPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALGDA 426 (438)
Q Consensus 381 ~p~f~~~~~~~~~ll~~~~~lv~eq~~v~~~~l~~~y~~~~~l~~~ 426 (438)
.+.......++..+...++.|.+++..+|.+|...|--..+..|+
T Consensus 753 -~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~L~~~~~~~ 797 (802)
T KOG0733|consen 753 -STIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRSLSTATPDV 797 (802)
T ss_pred -eeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhcccccCCcc
Confidence 001111224667778888999999999999999998645555543
No 5
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-40 Score=350.03 Aligned_cols=223 Identities=22% Similarity=0.356 Sum_probs=192.3
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~ 233 (438)
.|+.+|+|||||||||||||++|+++|++.+++|+.+++++|.++|+|++|+.||++|++|+ +..||||||||||+
T Consensus 463 ~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR----~~aP~IiFfDEiDs 538 (693)
T KOG0730|consen 463 FGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKAR----QVAPCIIFFDEIDA 538 (693)
T ss_pred hcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHh----hcCCeEEehhhHHh
Confidence 47899999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred cccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCHH
Q 013704 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 311 (438)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e 311 (438)
+++.|++. ..++.+|.+++ |++ +|||+ +...+|.||++||+|+.||+||+||||||+.++ +|+.+
T Consensus 539 i~~~R~g~-~~~v~~RVlsq-LLt--------EmDG~---e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~ 605 (693)
T KOG0730|consen 539 LAGSRGGS-SSGVTDRVLSQ-LLT--------EMDGL---EALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLE 605 (693)
T ss_pred HhhccCCC-ccchHHHHHHH-HHH--------Hcccc---cccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHH
Confidence 99998753 33555665554 444 68898 778999999999999999999999999999999 69999
Q ss_pred HHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHHHhHHhHHHHHHHHhcCCCCCCCCCCc
Q 013704 312 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQP 387 (438)
Q Consensus 312 ~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~i~~~~~e~i~~~~~~~~~~~p~f~~~ 387 (438)
.|.+|++..+++ ++++++.|++.+++|||++|. ++|++++.-++++-+.. -...
T Consensus 606 aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~---~lCq~A~~~a~~e~i~a-------------------~~i~ 663 (693)
T KOG0730|consen 606 ARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIV---AVCQEAALLALRESIEA-------------------TEIT 663 (693)
T ss_pred HHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHH---HHHHHHHHHHHHHhccc-------------------cccc
Confidence 999999988875 567888999999999999999 99999998888876652 1112
Q ss_pred cccHHHHHHHHhhhhhhHHHHHHHHHHH
Q 013704 388 KMTLDKLLEYGRMLVQEQENVKRVQLAD 415 (438)
Q Consensus 388 ~~~~~~ll~~~~~lv~eq~~v~~~~l~~ 415 (438)
...++..++..++.+...+..+|..++.
T Consensus 664 ~~hf~~al~~~r~s~~~~~~~~Ye~fa~ 691 (693)
T KOG0730|consen 664 WQHFEEALKAVRPSLTSELLEKYEDFAA 691 (693)
T ss_pred HHHHHHHHHhhcccCCHHHHHHHHHHhh
Confidence 3345566777777777777777776553
No 6
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-40 Score=325.44 Aligned_cols=243 Identities=22% Similarity=0.290 Sum_probs=207.6
Q ss_pred CCCCC-cEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 013704 155 NVKVP-LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (438)
Q Consensus 155 ~~~~p-~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~ 233 (438)
|+..| +|+|++||||||||+||+|||.+++..|+.|+++.|.++|.|++++++|-+|+-|+ .++|++|||||||+
T Consensus 240 GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemAR----fyAPStIFiDEIDs 315 (491)
T KOG0738|consen 240 GIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMAR----FYAPSTIFIDEIDS 315 (491)
T ss_pred hcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHH----HhCCceeehhhHHH
Confidence 55555 99999999999999999999999999999999999999999999999999999888 99999999999999
Q ss_pred cccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCC-CCceEEEecCCCCCCCccccCCCcceEEEe--cCCH
Q 013704 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN-PRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 310 (438)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~-~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~ 310 (438)
++.+|++.++ ....+++.+.|+- ||||+-..... ..|+|+++||.||.||+||+| ||++.|+ +|+.
T Consensus 316 lcs~RG~s~E-HEaSRRvKsELLv--------QmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~ 384 (491)
T KOG0738|consen 316 LCSQRGGSSE-HEASRRVKSELLV--------QMDGVQGTLENSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDA 384 (491)
T ss_pred HHhcCCCccc-hhHHHHHHHHHHH--------HhhccccccccceeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCH
Confidence 9999987544 4445666666664 78887333222 448889999999999999999 9999999 6999
Q ss_pred HHHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHHHhHHhHHHHHHHHhcCCCCCCCCCC
Q 013704 311 EDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQ 386 (438)
Q Consensus 311 e~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~i~~~~~e~i~~~~~~~~~~~p~f~~ 386 (438)
+.|.++++..+.. +++++++|++.+++|+|+||. .+|..+.+.++|+.+.....+.+.. +.. ..|..+.
T Consensus 385 ~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~---nvCreAsm~~mRR~i~g~~~~ei~~--lak--E~~~~pv 457 (491)
T KOG0738|consen 385 EARSALIKILLRSVELDDPVNLEDLAERSEGYSGADIT---NVCREASMMAMRRKIAGLTPREIRQ--LAK--EEPKMPV 457 (491)
T ss_pred HHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHH---HHHHHHHHHHHHHHHhcCCcHHhhh--hhh--hcccccc
Confidence 9999999988875 678899999999999999999 9999999999999998876655532 111 1233334
Q ss_pred ccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhc
Q 013704 387 PKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 419 (438)
Q Consensus 387 ~~~~~~~ll~~~~~lv~eq~~v~~~~l~~~y~~ 419 (438)
.+.+++..+...+++++..+..++.+|.++|.+
T Consensus 458 ~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 458 TNEDFEEALRKVRPSVSAADLEKYEKWMDEFGS 490 (491)
T ss_pred chhhHHHHHHHcCcCCCHHHHHHHHHHHHHhcC
Confidence 567899999999999999999999999999953
No 7
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-39 Score=344.89 Aligned_cols=240 Identities=20% Similarity=0.331 Sum_probs=199.2
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~ 233 (438)
.|.++..|||||||||||||.+|+|+|.++.++|+.|.+++|.+.|+|++|+++|++|++|+ ..+||||||||+|+
T Consensus 700 sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR----~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 700 SGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERAR----SAAPCVIFFDELDS 775 (953)
T ss_pred ccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhh----ccCCeEEEeccccc
Confidence 47788899999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred cccCCCCC-ccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEec---CC
Q 013704 234 GAGRMGGT-TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA---PT 309 (438)
Q Consensus 234 l~~~r~~~-~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~l---P~ 309 (438)
+++.|+.+ ..+.+.+|+|.+.|.+ +||+.. .....|+||+|||||+.|||+|+||||||+.+++ -+
T Consensus 776 lAP~RG~sGDSGGVMDRVVSQLLAE---------LDgls~-~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d 845 (953)
T KOG0736|consen 776 LAPNRGRSGDSGGVMDRVVSQLLAE---------LDGLSD-SSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNED 845 (953)
T ss_pred cCccCCCCCCccccHHHHHHHHHHH---------hhcccC-CCCCceEEEecCCCccccChhhcCCCccceeEEecCCcc
Confidence 99998753 3455667777766655 566622 3678999999999999999999999999999995 46
Q ss_pred HHHHHHHHHhhhCC----CCCCHHHHHHHHc-cCCcchhHHHHHHHHhhhhHHHHHHHhHHhHHHHHHHHhcCCCCCCCC
Q 013704 310 REDRIGVCSGIFRT----DNVPKEDIVKLVD-TFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTF 384 (438)
Q Consensus 310 ~e~R~~Il~~~l~~----~~v~~~~la~l~~-~~sgadi~~~~al~~~~~~~air~~i~~~~~e~i~~~~~~~~~~~p~f 384 (438)
.+.+..|+++..++ .+|++.+|++.+. .|+|||+= +||+.+...|+++.+...+...+.. .+.. =
T Consensus 846 ~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlY---sLCSdA~l~AikR~i~~ie~g~~~~-----~e~~--~ 915 (953)
T KOG0736|consen 846 AESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLY---SLCSDAMLAAIKRTIHDIESGTISE-----EEQE--S 915 (953)
T ss_pred HHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHH---HHHHHHHHHHHHHHHHHhhhccccc-----cccC--C
Confidence 77888999876664 6788888888774 79999865 9999999999999887754322221 1111 1
Q ss_pred CCccccHHHHHHHHh---hhhhhHHHHHHHHHHHHH
Q 013704 385 EQPKMTLDKLLEYGR---MLVQEQENVKRVQLADKY 417 (438)
Q Consensus 385 ~~~~~~~~~ll~~~~---~lv~eq~~v~~~~l~~~y 417 (438)
....++.++++++.+ +.++|||+..|..+..+|
T Consensus 916 ~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~f 951 (953)
T KOG0736|consen 916 SSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQF 951 (953)
T ss_pred ceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhh
Confidence 234567788877766 569999999999999887
No 8
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-39 Score=333.53 Aligned_cols=198 Identities=24% Similarity=0.340 Sum_probs=173.4
Q ss_pred hcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecc
Q 013704 151 LNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 230 (438)
Q Consensus 151 l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDE 230 (438)
+...|..+|+|+|||||||||||+||++||.++++||+.++++++.+++.|++++.||++|+.|. ...|||+||||
T Consensus 215 ~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~----~~aPcivFiDe 290 (802)
T KOG0733|consen 215 FSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAK----SNAPCIVFIDE 290 (802)
T ss_pred HhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHh----ccCCeEEEeec
Confidence 34568999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred ccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cC
Q 013704 231 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--AP 308 (438)
Q Consensus 231 iD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP 308 (438)
||++.++|.. .+.++..|+| ++|+..+|++.+.. .....|.||+|||||+.||++|+|+||||+.|. +|
T Consensus 291 IDAI~pkRe~-aqreMErRiV-aQLlt~mD~l~~~~-------~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP 361 (802)
T KOG0733|consen 291 IDAITPKREE-AQREMERRIV-AQLLTSMDELSNEK-------TKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVP 361 (802)
T ss_pred ccccccchhh-HHHHHHHHHH-HHHHHhhhcccccc-------cCCCCeEEEecCCCCcccCHHHhccccccceeeecCC
Confidence 9999999875 5555655555 55666555332222 224779999999999999999999999999999 59
Q ss_pred CHHHHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHHHhH
Q 013704 309 TREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISE 364 (438)
Q Consensus 309 ~~e~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~i~~ 364 (438)
++.+|.+||+.+.+. .+++...|++++.||.|+|+. |||..+..-+|++.+.+
T Consensus 362 ~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~---AL~~~Aa~vAikR~ld~ 418 (802)
T KOG0733|consen 362 SETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLM---ALCREAAFVAIKRILDQ 418 (802)
T ss_pred chHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHH---HHHHHHHHHHHHHHhhc
Confidence 999999999987764 577888999999999999999 99999999999987664
No 9
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-37 Score=312.83 Aligned_cols=231 Identities=20% Similarity=0.262 Sum_probs=185.9
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~ 233 (438)
.|.+.|+||||.||||||||+||+|||.+.++||++++++++...|+|...+.+|++|..|+ ..+||||||||||+
T Consensus 332 LGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk----~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 332 LGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAK----ARAPCIIFIDEIDA 407 (752)
T ss_pred ccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHHH----hcCCeEEEEechhh
Confidence 36799999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred cccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCHH
Q 013704 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 311 (438)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e 311 (438)
+.++|....+. ..+|.+++.|. +|||+ ..+..|+||++||.|+.||+||.||||||+.+. .|+..
T Consensus 408 vG~kR~~~~~~-y~kqTlNQLLv---------EmDGF---~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~ 474 (752)
T KOG0734|consen 408 VGGKRNPSDQH-YAKQTLNQLLV---------EMDGF---KQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVR 474 (752)
T ss_pred hcccCCccHHH-HHHHHHHHHHH---------HhcCc---CcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcc
Confidence 99988754443 55566666553 68999 778899999999999999999999999999999 58999
Q ss_pred HHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHHHhH---HhHHHHHHHHhcCCCCCCCC
Q 013704 312 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISE---VGIERIGKRLVNSKEGPPTF 384 (438)
Q Consensus 312 ~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~i~~---~~~e~i~~~~~~~~~~~p~f 384 (438)
.|.+||+.++.+ .+||++-|++=+.+|+|+||+ .+...++..+..+-... .++|-.-.+++=..+...-|
T Consensus 475 GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLa---NlVNqAAlkAa~dga~~VtM~~LE~akDrIlMG~ERks~~ 551 (752)
T KOG0734|consen 475 GRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLA---NLVNQAALKAAVDGAEMVTMKHLEFAKDRILMGPERKSMV 551 (752)
T ss_pred cHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHH---HHHHHHHHHHHhcCcccccHHHHhhhhhheeecccccccc
Confidence 999999987765 688999999999999999999 55555444443332222 23444444444332222222
Q ss_pred -CCccccHHHHHHHHhhhhhh
Q 013704 385 -EQPKMTLDKLLEYGRMLVQE 404 (438)
Q Consensus 385 -~~~~~~~~~ll~~~~~lv~e 404 (438)
.....++.+.+|.||++|.-
T Consensus 552 i~~eak~~TAyHE~GHAivA~ 572 (752)
T KOG0734|consen 552 IDEEAKKITAYHEGGHAIVAL 572 (752)
T ss_pred cChhhhhhhhhhccCceEEEe
Confidence 23345577889999988653
No 10
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-36 Score=287.09 Aligned_cols=210 Identities=25% Similarity=0.333 Sum_probs=185.9
Q ss_pred CCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 013704 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (438)
Q Consensus 153 ~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (438)
.-|+.+|+|+|||||||||||+|++++|+...+.||++.++++..+|.|+..+++|.+|+.|+ .+.|+||||||+|
T Consensus 183 qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlak----enapsiifideid 258 (408)
T KOG0727|consen 183 QIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAK----ENAPSIIFIDEID 258 (408)
T ss_pred HhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHh----ccCCcEEEeehhh
Confidence 458999999999999999999999999999999999999999999999999999999999887 9999999999999
Q ss_pred ccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCH
Q 013704 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 310 (438)
Q Consensus 233 ~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~ 310 (438)
+++.+|.+ ..+..++.|+..|++|++ ||||+ ....+|.||++||+.++|||||+||||+|+.|+ +|++
T Consensus 259 aiatkrfd--aqtgadrevqril~elln-----qmdgf---dq~~nvkvimatnradtldpallrpgrldrkiefplpdr 328 (408)
T KOG0727|consen 259 AIATKRFD--AQTGADREVQRILIELLN-----QMDGF---DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 328 (408)
T ss_pred hHhhhhcc--ccccccHHHHHHHHHHHH-----hccCc---CcccceEEEEecCcccccCHhhcCCccccccccCCCCch
Confidence 99998774 346678899999999999 99999 888999999999999999999999999999999 4788
Q ss_pred HHHHHHHHhhh----CCCCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHH---HHhHHhHHHHHHHHhcCCC
Q 013704 311 EDRIGVCSGIF----RTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK---WISEVGIERIGKRLVNSKE 379 (438)
Q Consensus 311 e~R~~Il~~~l----~~~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~---~i~~~~~e~i~~~~~~~~~ 379 (438)
.++.-++..+. ..++++++++...-+..+|++|. ++|..+-+.++|+ .+.+.++|..-+..++...
T Consensus 329 rqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~---aicqeagm~avr~nryvvl~kd~e~ay~~~vk~~~ 401 (408)
T KOG0727|consen 329 RQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADIN---AICQEAGMLAVRENRYVVLQKDFEKAYKTVVKKDE 401 (408)
T ss_pred hhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHH---HHHHHHhHHHHHhcceeeeHHHHHHHHHhhcCCcc
Confidence 88877776544 45778889999999999999999 9999999998875 3445577777666665443
No 11
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-35 Score=307.77 Aligned_cols=192 Identities=21% Similarity=0.344 Sum_probs=175.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l 234 (438)
..+.+.|||||||||||||+||.++|..++..||.+.+++|.++|.|.++.++|.+|.+|. ..+||||||||+|++
T Consensus 697 plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~----~a~PCiLFFDEfdSi 772 (952)
T KOG0735|consen 697 PLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQ----SAKPCILFFDEFDSI 772 (952)
T ss_pred CcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhh----ccCCeEEEecccccc
Confidence 4677899999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred ccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCHHH
Q 013704 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 312 (438)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e~ 312 (438)
+++|+. ..-.+.+|.|+++|.+ |||. +...+|.|+++|.||+.|||||+||||+|+.++ +|+..+
T Consensus 773 APkRGh-DsTGVTDRVVNQlLTe---------lDG~---Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~e 839 (952)
T KOG0735|consen 773 APKRGH-DSTGVTDRVVNQLLTE---------LDGA---EGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPE 839 (952)
T ss_pred CcccCC-CCCCchHHHHHHHHHh---------hccc---cccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHH
Confidence 999984 3446778888877754 7777 667999999999999999999999999999999 899999
Q ss_pred HHHHHHhhh----CCCCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHHHhHHh
Q 013704 313 RIGVCSGIF----RTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVG 366 (438)
Q Consensus 313 R~~Il~~~l----~~~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~i~~~~ 366 (438)
|++|++.+- ...+++++.++..+++|+|||+. +|+..+...++++++.+.+
T Consensus 840 Rl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq---~ll~~A~l~avh~~l~~~~ 894 (952)
T KOG0735|consen 840 RLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQ---SLLYNAQLAAVHEILKRED 894 (952)
T ss_pred HHHHHHHHhhccCCccccchHHHhhhcCCCchhhHH---HHHHHHHHHHHHHHHHhcC
Confidence 999998554 45789999999999999999999 8999999999999998865
No 12
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.3e-35 Score=313.25 Aligned_cols=232 Identities=22% Similarity=0.271 Sum_probs=190.7
Q ss_pred CCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 013704 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (438)
Q Consensus 153 ~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (438)
..|.+.|+|+||+||||||||+||+|+|.+.|+||+.++++++...++|....++|.+|..|+ .++|||+||||||
T Consensus 338 ~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~~asrvr~lf~~ar----~~aP~iifideid 413 (774)
T KOG0731|consen 338 ELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGVGASRVRDLFPLAR----KNAPSIIFIDEID 413 (774)
T ss_pred HcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhcccchHHHHHHHHHhh----ccCCeEEEecccc
Confidence 348999999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred ccccCCCC---CccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--c
Q 013704 233 AGAGRMGG---TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--A 307 (438)
Q Consensus 233 ~l~~~r~~---~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--l 307 (438)
++...|++ ....+...+.+++.| |+|||+ .....|+|+++||+++.||+||+||||||+.+. +
T Consensus 414 a~~~~r~G~~~~~~~~e~e~tlnQll---------~emDgf---~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~ 481 (774)
T KOG0731|consen 414 AVGRKRGGKGTGGGQDEREQTLNQLL---------VEMDGF---ETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDL 481 (774)
T ss_pred cccccccccccCCCChHHHHHHHHHH---------HHhcCC---cCCCcEEEEeccCCccccCHHhcCCCccccceeccC
Confidence 99988852 122233344444444 368999 667899999999999999999999999999999 5
Q ss_pred CCHHHHHHHHHhhhCCC-----CCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHH---HHhHHhHHHHHHHHhcCCC
Q 013704 308 PTREDRIGVCSGIFRTD-----NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK---WISEVGIERIGKRLVNSKE 379 (438)
Q Consensus 308 P~~e~R~~Il~~~l~~~-----~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~---~i~~~~~e~i~~~~~~~~~ 379 (438)
|+...|.+|++.++.+. ++++..++.++.+|+|+||. .+|..+...++|+ .+...+++...++++..-+
T Consensus 482 p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~---n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G~~ 558 (774)
T KOG0731|consen 482 PDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLA---NLCNEAALLAARKGLREIGTKDLEYAIERVIAGME 558 (774)
T ss_pred CchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHH---hhhhHHHHHHHHhccCccchhhHHHHHHHHhcccc
Confidence 99999999999777653 44555699999999999999 7788887777775 4455577788887776655
Q ss_pred CCCCCCC-ccccHHHHHHHHhhhhh
Q 013704 380 GPPTFEQ-PKMTLDKLLEYGRMLVQ 403 (438)
Q Consensus 380 ~~p~f~~-~~~~~~~ll~~~~~lv~ 403 (438)
+.+.... .+...-+.+++||.++.
T Consensus 559 ~~~~~~~~~~~~~~a~~eagha~~g 583 (774)
T KOG0731|consen 559 KKSRVLSLEEKKTVAYHEAGHAVVG 583 (774)
T ss_pred ccchhcCHhhhhhhhhhhccchhhh
Confidence 4443332 33445667888887765
No 13
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-35 Score=280.44 Aligned_cols=208 Identities=20% Similarity=0.316 Sum_probs=182.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l 234 (438)
|+++|+|++|||+||||||+||+|+|++..+.|+++.+++|..+|.|+..+++|++|+-|. .++|+|+||||||++
T Consensus 215 GikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~----e~apSIvFiDEIdAi 290 (440)
T KOG0726|consen 215 GIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAE----EHAPSIVFIDEIDAI 290 (440)
T ss_pred CCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHH----hcCCceEEeehhhhh
Confidence 8999999999999999999999999999999999999999999999999999999999887 999999999999999
Q ss_pred ccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCHHH
Q 013704 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 312 (438)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e~ 312 (438)
..+|.+. .+...|.++.++++|++ |+||+ ..+..|-||++||+.+.|||||+||||.|+.|+ +|+...
T Consensus 291 GtKRyds--~SggerEiQrtmLELLN-----QldGF---dsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~T 360 (440)
T KOG0726|consen 291 GTKRYDS--NSGGEREIQRTMLELLN-----QLDGF---DSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKT 360 (440)
T ss_pred ccccccC--CCccHHHHHHHHHHHHH-----hccCc---cccCCeEEEEecccccccCHhhcCCCccccccccCCCchhh
Confidence 9988743 34456889999999999 99999 788999999999999999999999999999999 489999
Q ss_pred HHHHHHhh----hCCCCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHHHhH---HhHHHHHHHHhcCCC
Q 013704 313 RIGVCSGI----FRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISE---VGIERIGKRLVNSKE 379 (438)
Q Consensus 313 R~~Il~~~----l~~~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~i~~---~~~e~i~~~~~~~~~ 379 (438)
+..||..+ ....+++++++..--+.++|+||. |+|..+-.-++|+.-.. .++....++++-.++
T Consensus 361 kkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIk---AictEaGllAlRerRm~vt~~DF~ka~e~V~~~K~ 431 (440)
T KOG0726|consen 361 KKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIK---AICTEAGLLALRERRMKVTMEDFKKAKEKVLYKKK 431 (440)
T ss_pred hceeEEEeecccchhccccHHHHhhcccccccccHH---HHHHHHhHHHHHHHHhhccHHHHHHHHHHHHHhcc
Confidence 99999744 345788899999999999999999 88888777776654433 366666666665443
No 14
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-34 Score=272.25 Aligned_cols=210 Identities=18% Similarity=0.277 Sum_probs=184.1
Q ss_pred CCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 013704 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (438)
Q Consensus 153 ~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (438)
..|+..|+|+|||||||||||+||+++|....+.|+++++++|..+|.|+..+.+|++|--|+ .++|+|||.||||
T Consensus 175 aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmar----ehapsiifmdeid 250 (404)
T KOG0728|consen 175 ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEID 250 (404)
T ss_pred hcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHH----hcCCceEeeeccc
Confidence 458999999999999999999999999999999999999999999999999999999999888 9999999999999
Q ss_pred ccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEec--CCH
Q 013704 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTR 310 (438)
Q Consensus 233 ~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~l--P~~ 310 (438)
++...|..+ ....+..|+.++++|++ |+||+ +...++.||++||+.+-|||||+||||.|+.|++ |+.
T Consensus 251 sigs~r~e~--~~ggdsevqrtmlelln-----qldgf---eatknikvimatnridild~allrpgridrkiefp~p~e 320 (404)
T KOG0728|consen 251 SIGSSRVES--GSGGDSEVQRTMLELLN-----QLDGF---EATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNE 320 (404)
T ss_pred ccccccccC--CCCccHHHHHHHHHHHH-----hcccc---ccccceEEEEeccccccccHhhcCCCcccccccCCCCCH
Confidence 998876532 22356788899999999 99999 8889999999999999999999999999999995 899
Q ss_pred HHHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHH---HHhHHhHHHHHHHHhcCCC
Q 013704 311 EDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK---WISEVGIERIGKRLVNSKE 379 (438)
Q Consensus 311 e~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~---~i~~~~~e~i~~~~~~~~~ 379 (438)
+.|.+|++.+-++ .++++..+++...+.+|+++. ++|..+-+-++|+ .+++.++|-...++++...
T Consensus 321 ~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk---~vcteagm~alrerrvhvtqedfemav~kvm~k~~ 393 (404)
T KOG0728|consen 321 EARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVK---GVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDS 393 (404)
T ss_pred HHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhh---hhhhhhhHHHHHHhhccccHHHHHHHHHHHHhccc
Confidence 9999999865554 688999999999999999998 6676665555544 5566788888777775543
No 15
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-34 Score=280.03 Aligned_cols=259 Identities=20% Similarity=0.292 Sum_probs=196.1
Q ss_pred HHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHh
Q 013704 141 KVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 220 (438)
Q Consensus 141 ~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~ 220 (438)
.+++.+.-..+-..+.++-+||||||||||||++||+++|.+.+..|+.++.++|.++|.|+++++++++|+.|+ .
T Consensus 148 AVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemAR----e 223 (439)
T KOG0739|consen 148 AVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMAR----E 223 (439)
T ss_pred heeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHH----h
Confidence 333333333333445556699999999999999999999999999999999999999999999999999999888 9
Q ss_pred CCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCc
Q 013704 221 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 300 (438)
Q Consensus 221 ~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GR 300 (438)
++|+||||||||+++++|++ ++.+...|+-..+| |||.|+ -.....|.|+++||-||.||.|++| |
T Consensus 224 ~kPSIIFiDEiDslcg~r~e-nEseasRRIKTEfL---------VQMqGV--G~d~~gvLVLgATNiPw~LDsAIRR--R 289 (439)
T KOG0739|consen 224 NKPSIIFIDEIDSLCGSRSE-NESEASRRIKTEFL---------VQMQGV--GNDNDGVLVLGATNIPWVLDSAIRR--R 289 (439)
T ss_pred cCCcEEEeehhhhhccCCCC-CchHHHHHHHHHHH---------Hhhhcc--ccCCCceEEEecCCCchhHHHHHHH--H
Confidence 99999999999999998874 33333344444444 478887 3556899999999999999999999 9
Q ss_pred ceEEEe--cCCHHHHHHHHHhhhCCC-----CCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHHHhHHhHHHH---
Q 013704 301 MEKFYW--APTREDRIGVCSGIFRTD-----NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERI--- 370 (438)
Q Consensus 301 fd~~i~--lP~~e~R~~Il~~~l~~~-----~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~i~~~~~e~i--- 370 (438)
|++.|+ +|+...|..+++.++.+. .-+...++..+++|+|+||. .+.+.+.++.||+.-....+..+
T Consensus 290 FekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDis---ivVrDalmePvRkvqsAthFk~v~~~ 366 (439)
T KOG0739|consen 290 FEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDIS---IVVRDALMEPVRKVQSATHFKKVSGP 366 (439)
T ss_pred hhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceE---EEehhhhhhhHHHhhhhhhhhccCCC
Confidence 999999 599999999999888763 23455789999999999998 55566677777765544322211
Q ss_pred -----HHHHhcC-CCCCC-------------CCCCccccHHHHHH---HHhhhhhhHHHHHHHHHHHHHhcc
Q 013704 371 -----GKRLVNS-KEGPP-------------TFEQPKMTLDKLLE---YGRMLVQEQENVKRVQLADKYLSE 420 (438)
Q Consensus 371 -----~~~~~~~-~~~~p-------------~f~~~~~~~~~ll~---~~~~lv~eq~~v~~~~l~~~y~~~ 420 (438)
+..++.. ..+.| ....|.++..+++. ..++-|++.++.+-.++.+.|..+
T Consensus 367 s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFGqE 438 (439)
T KOG0739|consen 367 SNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFGQE 438 (439)
T ss_pred CChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhccC
Confidence 1122211 11111 23346666666654 455779999999999999988654
No 16
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-34 Score=274.91 Aligned_cols=209 Identities=21% Similarity=0.293 Sum_probs=179.9
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~ 233 (438)
.|+.+|+|+|||||||||||+.|+++|+..++-||++-+++|..+|+|+..+++|++|+.|+ ..+-|||||||||+
T Consensus 206 lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~mar----tkkaciiffdeida 281 (435)
T KOG0729|consen 206 LGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMAR----TKKACIIFFDEIDA 281 (435)
T ss_pred cCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhc----ccceEEEEeecccc
Confidence 48999999999999999999999999999999999999999999999999999999999887 88999999999999
Q ss_pred cccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCHH
Q 013704 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 311 (438)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e 311 (438)
+.+.|.+. +...+..|+.++++|+. |+||+ ..+.++.|+++||+|+.|||||+||||+|+.++ +|+.+
T Consensus 282 iggarfdd--g~ggdnevqrtmleli~-----qldgf---dprgnikvlmatnrpdtldpallrpgrldrkvef~lpdle 351 (435)
T KOG0729|consen 282 IGGARFDD--GAGGDNEVQRTMLELIN-----QLDGF---DPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLE 351 (435)
T ss_pred ccCccccC--CCCCcHHHHHHHHHHHH-----hccCC---CCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCccc
Confidence 99876632 22345688899999998 99999 889999999999999999999999999999999 69999
Q ss_pred HHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHH---HHHHhHHhHHHHHHHHhcCCC
Q 013704 312 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV---RKWISEVGIERIGKRLVNSKE 379 (438)
Q Consensus 312 ~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~ai---r~~i~~~~~e~i~~~~~~~~~ 379 (438)
.|..|++.+.+. .++-.+.++.++....|++|. .+|..+-+-+| |+..++.++-..+.++++...
T Consensus 352 grt~i~kihaksmsverdir~ellarlcpnstgaeir---svcteagmfairarrk~atekdfl~av~kvvkgy~ 423 (435)
T KOG0729|consen 352 GRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIR---SVCTEAGMFAIRARRKVATEKDFLDAVNKVVKGYA 423 (435)
T ss_pred ccceeEEEeccccccccchhHHHHHhhCCCCcchHHH---HHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 999999877665 456678899999999999998 55555444433 555566666666666665443
No 17
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.2e-32 Score=304.48 Aligned_cols=239 Identities=23% Similarity=0.366 Sum_probs=192.8
Q ss_pred CCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 013704 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (438)
Q Consensus 153 ~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (438)
..+..+|+|+|||||||||||++|+++|++++.+|+.++++++.++|+|++++.++.+|+.|+ ...||||||||+|
T Consensus 481 ~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~----~~~p~iifiDEid 556 (733)
T TIGR01243 481 KMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKAR----QAAPAIIFFDEID 556 (733)
T ss_pred hcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHH----hcCCEEEEEEChh
Confidence 346788999999999999999999999999999999999999999999999999999999998 8999999999999
Q ss_pred ccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCH
Q 013704 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 310 (438)
Q Consensus 233 ~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~ 310 (438)
++++.++.........+.++ .|+. +++|. ....+++||+|||+++.||++++||||||+.++ +|+.
T Consensus 557 ~l~~~r~~~~~~~~~~~~~~-~lL~--------~ldg~---~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~ 624 (733)
T TIGR01243 557 AIAPARGARFDTSVTDRIVN-QLLT--------EMDGI---QELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDE 624 (733)
T ss_pred hhhccCCCCCCccHHHHHHH-HHHH--------Hhhcc---cCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCH
Confidence 99988764333333344444 4444 35555 456789999999999999999999999999999 5999
Q ss_pred HHHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHHHhHHhHHHHHHHHhcCCCCCCCC-C
Q 013704 311 EDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTF-E 385 (438)
Q Consensus 311 e~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~i~~~~~e~i~~~~~~~~~~~p~f-~ 385 (438)
++|.+||+.+.+. .+++++.+++.+++|+|+||. ++|..+...++++.+.....+.+.. . .+.+ .
T Consensus 625 ~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~---~~~~~A~~~a~~~~~~~~~~~~~~~----~---~~~~~~ 694 (733)
T TIGR01243 625 EARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIE---AVCREAAMAALRESIGSPAKEKLEV----G---EEEFLK 694 (733)
T ss_pred HHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHHhhhccchhhhc----c---cccccc
Confidence 9999999877664 457788999999999999999 8999999999888766432211111 0 0001 1
Q ss_pred Ccccc---HHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 013704 386 QPKMT---LDKLLEYGRMLVQEQENVKRVQLADKY 417 (438)
Q Consensus 386 ~~~~~---~~~ll~~~~~lv~eq~~v~~~~l~~~y 417 (438)
.+.++ ++..++..++.+.+++...|.++..+|
T Consensus 695 ~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~~~ 729 (733)
T TIGR01243 695 DLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKEL 729 (733)
T ss_pred cCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 12333 555567777889999999999999988
No 18
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-33 Score=295.01 Aligned_cols=231 Identities=23% Similarity=0.304 Sum_probs=196.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l 234 (438)
|.+.|+|+||+||||||||+||+++|.+.++||+.+|++++...++|-....+|.+|.+|+ +++|||+||||||++
T Consensus 179 GakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAk----k~aP~IIFIDEiDAv 254 (596)
T COG0465 179 GAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAK----KNAPCIIFIDEIDAV 254 (596)
T ss_pred ccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhh----ccCCCeEEEehhhhc
Confidence 5699999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred ccCCCCC--ccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCH
Q 013704 235 AGRMGGT--TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 310 (438)
Q Consensus 235 ~~~r~~~--~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~ 310 (438)
...|+.. .......|.++++| |+|||+ .....|.||++||+|+.||+||+||||||+.+. .|+.
T Consensus 255 Gr~Rg~g~GggnderEQTLNQlL---------vEmDGF---~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi 322 (596)
T COG0465 255 GRQRGAGLGGGNDEREQTLNQLL---------VEMDGF---GGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDI 322 (596)
T ss_pred ccccCCCCCCCchHHHHHHHHHH---------hhhccC---CCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcch
Confidence 8877532 12222334444444 379999 567899999999999999999999999999999 5999
Q ss_pred HHHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHH---HHHhHHhHHHHHHHHhcCCCCCC-
Q 013704 311 EDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR---KWISEVGIERIGKRLVNSKEGPP- 382 (438)
Q Consensus 311 e~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air---~~i~~~~~e~i~~~~~~~~~~~p- 382 (438)
..|.+|++.+.++ .++++..+++.+.+|+|+|+. .+...+..-+.| .++...+++....+++...++.+
T Consensus 323 ~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~---nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~ 399 (596)
T COG0465 323 KGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLA---NLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSR 399 (596)
T ss_pred hhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHh---hhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCc
Confidence 9999999966654 567888999999999999998 555555544444 46677789999999998776655
Q ss_pred CCCCccccHHHHHHHHhhhhhh
Q 013704 383 TFEQPKMTLDKLLEYGRMLVQE 404 (438)
Q Consensus 383 ~f~~~~~~~~~ll~~~~~lv~e 404 (438)
.+.+.+....+.+|+||.++..
T Consensus 400 vise~ek~~~AYhEaghalv~~ 421 (596)
T COG0465 400 VISEAEKKITAYHEAGHALVGL 421 (596)
T ss_pred ccChhhhcchHHHHHHHHHHHH
Confidence 5778888899999999988654
No 19
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-33 Score=267.95 Aligned_cols=197 Identities=23% Similarity=0.331 Sum_probs=178.3
Q ss_pred cCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccc
Q 013704 152 NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDL 231 (438)
Q Consensus 152 ~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEi 231 (438)
...|+++|+|+|+|||||||||++|+++|.+.+..|+.+-++.|...|.|+..+++|..|..|. ..+|+||||||+
T Consensus 198 ~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAK----EkaP~IIFIDEl 273 (424)
T KOG0652|consen 198 ENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAK----EKAPTIIFIDEL 273 (424)
T ss_pred HhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhh----ccCCeEEEEech
Confidence 3458999999999999999999999999999999999999999999999999999999999887 899999999999
Q ss_pred cccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEec--CC
Q 013704 232 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 309 (438)
Q Consensus 232 D~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~l--P~ 309 (438)
|++..+|.++ ....++.|+.++++|++ |+||+ ....+|.||++||+.+-|||||+|.||+|+.|++ |+
T Consensus 274 DAIGtKRfDS--ek~GDREVQRTMLELLN-----QLDGF---ss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pn 343 (424)
T KOG0652|consen 274 DAIGTKRFDS--EKAGDREVQRTMLELLN-----QLDGF---SSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPN 343 (424)
T ss_pred hhhccccccc--cccccHHHHHHHHHHHH-----hhcCC---CCccceEEEeecccccccCHHHhhcccccccccCCCCC
Confidence 9999887742 34457899999999999 99999 7789999999999999999999999999999994 99
Q ss_pred HHHHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHHHhHH
Q 013704 310 REDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV 365 (438)
Q Consensus 310 ~e~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~i~~~ 365 (438)
.+.|..|++.+-++ ++++.++++.-++.|.|+-.. |+|-.+-+-++|+-..+.
T Consensus 344 e~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcK---AVcVEAGMiALRr~atev 400 (424)
T KOG0652|consen 344 EEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCK---AVCVEAGMIALRRGATEV 400 (424)
T ss_pred hHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhhe---eeehhhhHHHHhcccccc
Confidence 99999999866554 678899999999999999988 888888888888765554
No 20
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=3.2e-32 Score=259.65 Aligned_cols=183 Identities=23% Similarity=0.300 Sum_probs=155.3
Q ss_pred HHHHHhhhcCC---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHh
Q 013704 144 VHITKNFLNLP---NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 220 (438)
Q Consensus 144 ~~i~k~~l~~~---~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~ 220 (438)
..+...||..| +.=.|+++|||||||||||++|+++|++...|++.+.+.+|...++|+..+.|+++|++|+ +
T Consensus 133 crli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~----~ 208 (368)
T COG1223 133 CRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERAR----K 208 (368)
T ss_pred HHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHH----h
Confidence 34444566544 4456899999999999999999999999999999999999999999999999999999998 8
Q ss_pred CCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCc
Q 013704 221 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 300 (438)
Q Consensus 221 ~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GR 300 (438)
.+|||+||||+|+++-.|.-+.-..--...|+++|.+ |||. ..+.+|..|++||+|+.||+|+++ |
T Consensus 209 ~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTe---------lDgi---~eneGVvtIaaTN~p~~LD~aiRs--R 274 (368)
T COG1223 209 AAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTE---------LDGI---KENEGVVTIAATNRPELLDPAIRS--R 274 (368)
T ss_pred cCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHh---------ccCc---ccCCceEEEeecCChhhcCHHHHh--h
Confidence 9999999999999976544222222234566666654 6777 678999999999999999999999 9
Q ss_pred ceEEEe--cCCHHHHHHHHHhhhCCC----CCCHHHHHHHHccCCcchhH
Q 013704 301 MEKFYW--APTREDRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSID 344 (438)
Q Consensus 301 fd~~i~--lP~~e~R~~Il~~~l~~~----~v~~~~la~l~~~~sgadi~ 344 (438)
|+..|+ +|+.++|+.|++.+.++. +.+++.+++.+.++||.||.
T Consensus 275 FEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdik 324 (368)
T COG1223 275 FEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIK 324 (368)
T ss_pred hhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHH
Confidence 999998 699999999999988874 34466899999999999996
No 21
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-32 Score=288.63 Aligned_cols=188 Identities=24% Similarity=0.382 Sum_probs=164.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l 234 (438)
+..+|+|+|||||||||||++|+++|++++.+|+.+..+++.++|+|+++++|+++|..|+ +.+||||||||+|++
T Consensus 272 ~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~----~~~p~iiFiDEiDs~ 347 (494)
T COG0464 272 GLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKAR----KLAPSIIFIDEIDSL 347 (494)
T ss_pred CCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHH----cCCCcEEEEEchhhh
Confidence 6788999999999999999999999999999999999999999999999999999999998 899999999999999
Q ss_pred ccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCHHH
Q 013704 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 312 (438)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e~ 312 (438)
++.|+... .....+.+ +.|+. +++|. +...+|.||+|||+|+.||++++|+||||+.++ +|+.++
T Consensus 348 ~~~r~~~~-~~~~~r~~-~~lL~--------~~d~~---e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 348 ASGRGPSE-DGSGRRVV-GQLLT--------ELDGI---EKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred hccCCCCC-chHHHHHH-HHHHH--------HhcCC---CccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 99886422 22223444 44544 45555 677889999999999999999999999999999 599999
Q ss_pred HHHHHHhhhCC------CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHHH
Q 013704 313 RIGVCSGIFRT------DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 362 (438)
Q Consensus 313 R~~Il~~~l~~------~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~i 362 (438)
|.+|++.++.. .+++.+.+++++++|+|+||. ++|..+...++++..
T Consensus 415 r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~---~i~~ea~~~~~~~~~ 467 (494)
T COG0464 415 RLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIA---ALVREAALEALREAR 467 (494)
T ss_pred HHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHH---HHHHHHHHHHHHHhc
Confidence 99999988873 367788899999999999999 889998888888874
No 22
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=5.6e-32 Score=269.15 Aligned_cols=190 Identities=22% Similarity=0.366 Sum_probs=169.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccc
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 235 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~ 235 (438)
.++|+|||||||||||||++|+++|++.|.+|+.++.+.+.++|.|+.+++++.+|.-|. +.+||||||||+|+++
T Consensus 124 l~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvFslAs----Kl~P~iIFIDEvds~L 199 (386)
T KOG0737|consen 124 LRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLAS----KLQPSIIFIDEVDSFL 199 (386)
T ss_pred ccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHHHHhhhh----hcCcceeehhhHHHHH
Confidence 578999999999999999999999999999999999999999999999999999999998 9999999999999999
Q ss_pred cCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCHHHH
Q 013704 236 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 313 (438)
Q Consensus 236 ~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e~R 313 (438)
+.| . +.+....+++.+.+|.+.| |. +.....+|+|++|||+|..||+|++| ||.+.++ +|+.++|
T Consensus 200 ~~R-~-s~dHEa~a~mK~eFM~~WD--------Gl-~s~~~~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR 266 (386)
T KOG0737|consen 200 GQR-R-STDHEATAMMKNEFMALWD--------GL-SSKDSERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQR 266 (386)
T ss_pred hhc-c-cchHHHHHHHHHHHHHHhc--------cc-cCCCCceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhH
Confidence 888 3 3344455666677777555 44 33455679999999999999999999 9999999 6999999
Q ss_pred HHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHHHhHH
Q 013704 314 IGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV 365 (438)
Q Consensus 314 ~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~i~~~ 365 (438)
.+|++-++++ .++++..++.+++||+|.||. .+|..+....+|+++...
T Consensus 267 ~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLk---elC~~Aa~~~ire~~~~~ 319 (386)
T KOG0737|consen 267 RKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLK---ELCRLAALRPIRELLVSE 319 (386)
T ss_pred HHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHH---HHHHHHhHhHHHHHHHhc
Confidence 9999999986 567788999999999999999 899999999999998873
No 23
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.98 E-value=1.1e-31 Score=282.90 Aligned_cols=183 Identities=21% Similarity=0.311 Sum_probs=154.7
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~ 233 (438)
.|...|+|+|||||||||||++|+++|++++.+++.++++.+.++|+|+++.+++++|+.|. ..+||||||||||+
T Consensus 254 ~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~----~~~P~IL~IDEID~ 329 (489)
T CHL00195 254 YGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAE----ALSPCILWIDEIDK 329 (489)
T ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHH----hcCCcEEEehhhhh
Confidence 47788999999999999999999999999999999999999999999999999999999887 88999999999999
Q ss_pred cccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCHH
Q 013704 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 311 (438)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e 311 (438)
++..+......... ..+..+|+..++ ....+|+||+|||+++.||++++|+||||+.++ +|+.+
T Consensus 330 ~~~~~~~~~d~~~~-~rvl~~lL~~l~-------------~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~ 395 (489)
T CHL00195 330 AFSNSESKGDSGTT-NRVLATFITWLS-------------EKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLE 395 (489)
T ss_pred hhccccCCCCchHH-HHHHHHHHHHHh-------------cCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHH
Confidence 98764332222233 344455555333 446789999999999999999999999999999 59999
Q ss_pred HHHHHHHhhhCCC------CCCHHHHHHHHccCCcchhHHHHHHHHhhhhHH
Q 013704 312 DRIGVCSGIFRTD------NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDE 357 (438)
Q Consensus 312 ~R~~Il~~~l~~~------~v~~~~la~l~~~~sgadi~~~~al~~~~~~~a 357 (438)
+|.+||+.++.+. +.+.+.+++.+++|+|+||. +++..+...+
T Consensus 396 eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~---~lv~eA~~~A 444 (489)
T CHL00195 396 EREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIE---QSIIEAMYIA 444 (489)
T ss_pred HHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHH---HHHHHHHHHH
Confidence 9999999887652 56678999999999999999 6666655444
No 24
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.98 E-value=7.5e-32 Score=278.19 Aligned_cols=208 Identities=23% Similarity=0.307 Sum_probs=171.6
Q ss_pred cCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccc
Q 013704 152 NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDL 231 (438)
Q Consensus 152 ~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEi 231 (438)
...|+.+|+|+|||||||||||++|+++|++++.+++.+.++.+..+|.|++++.++++|..|. ..+||||||||+
T Consensus 172 ~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~----~~~P~ILfIDEI 247 (398)
T PTZ00454 172 EQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLAR----ENAPSIIFIDEV 247 (398)
T ss_pred HhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHH----hcCCeEEEEECH
Confidence 3457889999999999999999999999999999999999999999999999999999999887 899999999999
Q ss_pred cccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCC
Q 013704 232 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 309 (438)
Q Consensus 232 D~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~ 309 (438)
|+++.++.+.. +..++.+...+.+++. +++|+ ....++.||+|||+++.||++++|+||||+.++ +|+
T Consensus 248 D~i~~~r~~~~--~~~d~~~~r~l~~LL~-----~ld~~---~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~ 317 (398)
T PTZ00454 248 DSIATKRFDAQ--TGADREVQRILLELLN-----QMDGF---DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 317 (398)
T ss_pred hhhcccccccc--CCccHHHHHHHHHHHH-----Hhhcc---CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcC
Confidence 99988764211 1122344455555555 56665 445789999999999999999999999999999 599
Q ss_pred HHHHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHH---HhHHhHHHHHHHHhc
Q 013704 310 REDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW---ISEVGIERIGKRLVN 376 (438)
Q Consensus 310 ~e~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~---i~~~~~e~i~~~~~~ 376 (438)
.++|..||+.++.+ .+++.+.++..+++|+|+||. ++|..+...++++. +...+++...++++.
T Consensus 318 ~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~---~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 318 RRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIA---AICQEAGMQAVRKNRYVILPKDFEKGYKTVVR 388 (398)
T ss_pred HHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHcCCCccCHHHHHHHHHHHHh
Confidence 99999999988765 456788999999999999999 89999888888763 344455555555443
No 25
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=6.8e-31 Score=270.97 Aligned_cols=208 Identities=22% Similarity=0.327 Sum_probs=173.0
Q ss_pred CCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 013704 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (438)
Q Consensus 153 ~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (438)
..|+.+|+++|||||||||||++|+++|++++.+|+.++++++.++|.|++++.++.+|+.|. ...||||||||+|
T Consensus 159 ~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~IlfiDEiD 234 (389)
T PRK03992 159 EVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAR----EKAPSIIFIDEID 234 (389)
T ss_pred hcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHH----hcCCeEEEEechh
Confidence 457889999999999999999999999999999999999999999999999999999999887 8899999999999
Q ss_pred ccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCH
Q 013704 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 310 (438)
Q Consensus 233 ~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~ 310 (438)
++++.+.+.. ......+..++.+++. ++++. ....++.||+|||+++.||++++||||||+.++ .|+.
T Consensus 235 ~l~~~r~~~~--~~~~~~~~~~l~~lL~-----~ld~~---~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~ 304 (389)
T PRK03992 235 AIAAKRTDSG--TSGDREVQRTLMQLLA-----EMDGF---DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDE 304 (389)
T ss_pred hhhcccccCC--CCccHHHHHHHHHHHH-----hcccc---CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCH
Confidence 9988765322 1223344555666555 56665 445689999999999999999999999999998 5999
Q ss_pred HHHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHH---HHhHHhHHHHHHHHhcC
Q 013704 311 EDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK---WISEVGIERIGKRLVNS 377 (438)
Q Consensus 311 e~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~---~i~~~~~e~i~~~~~~~ 377 (438)
++|.+||+.++.. .+++.+.++..+++|+|+||. ++|.++...++++ .+...+++....++...
T Consensus 305 ~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~---~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~ 375 (389)
T PRK03992 305 EGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLK---AICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGK 375 (389)
T ss_pred HHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhcc
Confidence 9999999988765 357788999999999999999 8899888888775 34455666665555433
No 26
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.97 E-value=4e-31 Score=301.67 Aligned_cols=225 Identities=11% Similarity=0.065 Sum_probs=169.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCC----------CC-----------------------
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN----------AG----------------------- 201 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~----------~G----------------------- 201 (438)
|.++|+||||+||||||||+||+++|.++++||+.++++++.+++ +|
T Consensus 1626 Gl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~ 1705 (2281)
T CHL00206 1626 ALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMM 1705 (2281)
T ss_pred CCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhc
Confidence 678999999999999999999999999999999999999988654 12
Q ss_pred --------ChHH--HHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCcc
Q 013704 202 --------EPAK--LIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 271 (438)
Q Consensus 202 --------e~~~--~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~ 271 (438)
+.+. .|+.+|+.|+ +.+||||||||||+++.+.. .....+.|++ .|+|..
T Consensus 1706 n~~~~~m~~~e~~~rIr~lFelAR----k~SPCIIFIDEIDaL~~~ds--------~~ltL~qLLn--------eLDg~~ 1765 (2281)
T CHL00206 1706 NALTMDMMPKIDRFYITLQFELAK----AMSPCIIWIPNIHDLNVNES--------NYLSLGLLVN--------SLSRDC 1765 (2281)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHH----HCCCeEEEEEchhhcCCCcc--------ceehHHHHHH--------Hhcccc
Confidence 2222 3788899887 89999999999999986521 1122345555 344431
Q ss_pred ccCCCCCceEEEecCCCCCCCccccCCCcceEEEec--CCHHHHHHHHHhhh-------CCCCCCHHHHHHHHccCCcch
Q 013704 272 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIF-------RTDNVPKEDIVKLVDTFPGQS 342 (438)
Q Consensus 272 ~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~l--P~~e~R~~Il~~~l-------~~~~v~~~~la~l~~~~sgad 342 (438)
......+|+||||||+|+.|||||+||||||+.+.+ |+..+|.+++..++ ....++.+.++..+.||+|||
T Consensus 1766 ~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGAD 1845 (2281)
T CHL00206 1766 ERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARD 1845 (2281)
T ss_pred ccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHH
Confidence 113457899999999999999999999999999994 88888888776432 223467889999999999999
Q ss_pred hHHHHHHHHhhhhHHHHH---HHhHHhHHHHHHHHhcCCCCCCCCCCccccHHHHHHHHhhhhhh
Q 013704 343 IDFFGALRARVYDDEVRK---WISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQE 404 (438)
Q Consensus 343 i~~~~al~~~~~~~air~---~i~~~~~e~i~~~~~~~~~~~p~f~~~~~~~~~ll~~~~~lv~e 404 (438)
|. +|+.+|..-++++ .|...+++....+++...+......+.. --..++.||++++.
T Consensus 1846 La---nLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~~~~~~~~--~ia~yEiGhAvvq~ 1905 (2281)
T CHL00206 1846 LV---ALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQVRSVQDH--GILFYQIGRAVAQN 1905 (2281)
T ss_pred HH---HHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhcccCcchh--hhhhhHHhHHHHHH
Confidence 99 9999998888876 3555566666666654433222222222 23568999988754
No 27
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.5e-32 Score=277.53 Aligned_cols=195 Identities=17% Similarity=0.304 Sum_probs=165.8
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC-ceEEEeccccccCCCCChHHHHHHHHHHHHHHHH----hCCceeEEe
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGI-NPIMMSAGELESGNAGEPAKLIRQRYREAADIIK----KGKMCCLFI 228 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~-~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~----~~~p~ILfI 228 (438)
.|++--+|||||||||||||++||.|.+.+++ ++-.++++++.++|+|++|+++|++|..|.+.-+ ...-.||+|
T Consensus 251 lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIF 330 (744)
T KOG0741|consen 251 LGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIF 330 (744)
T ss_pred cCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEe
Confidence 47777899999999999999999999999986 6788999999999999999999999999987666 344469999
Q ss_pred ccccccccCCCCCcc-ccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe-
Q 013704 229 NDLDAGAGRMGGTTQ-YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW- 306 (438)
Q Consensus 229 DEiD~l~~~r~~~~~-~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~- 306 (438)
||||++|.+|++... ..+.++.|+++|. .|||+ +...++.||+.|||.+.||+||+|||||+..++
T Consensus 331 DEiDAICKqRGS~~g~TGVhD~VVNQLLs---------KmDGV---eqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEI 398 (744)
T KOG0741|consen 331 DEIDAICKQRGSMAGSTGVHDTVVNQLLS---------KMDGV---EQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEI 398 (744)
T ss_pred hhhHHHHHhcCCCCCCCCccHHHHHHHHH---------hcccH---HhhhcEEEEeccCchhhHHHHhcCCCceEEEEEE
Confidence 999999999886544 3456777776664 58888 888999999999999999999999999999888
Q ss_pred -cCCHHHHHHHHHhhhC--------CCCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHHHh
Q 013704 307 -APTREDRIGVCSGIFR--------TDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 363 (438)
Q Consensus 307 -lP~~e~R~~Il~~~l~--------~~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~i~ 363 (438)
+|+++.|++|++.+.+ ..++++++++.+++.|+||.|+ .+...+..-++-+.+.
T Consensus 399 sLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEle---glVksA~S~A~nR~vk 461 (744)
T KOG0741|consen 399 SLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELE---GLVKSAQSFAMNRHVK 461 (744)
T ss_pred eCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHH---HHHHHHHHHHHHhhhc
Confidence 7999999999985443 3789999999999999999999 5555555555555443
No 28
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=8.4e-31 Score=278.09 Aligned_cols=232 Identities=22% Similarity=0.289 Sum_probs=179.7
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~ 233 (438)
.+...|+|+|||||||||||++|+++|++++.+++.++++++.+.+.|..++.++.+|+.|. ...||||||||+|+
T Consensus 83 ~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~----~~~p~Il~iDEid~ 158 (495)
T TIGR01241 83 LGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAK----KNAPCIIFIDEIDA 158 (495)
T ss_pred cCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHH----hcCCCEEEEechhh
Confidence 46788999999999999999999999999999999999999999999999999999999987 88999999999999
Q ss_pred cccCCCCCcc--ccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCC
Q 013704 234 GAGRMGGTTQ--YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 309 (438)
Q Consensus 234 l~~~r~~~~~--~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~ 309 (438)
++..+..... .....+.++. |+. +++++ ....+++||+|||+++.||++++||||||+.++ +|+
T Consensus 159 l~~~r~~~~~~~~~~~~~~~~~-lL~--------~~d~~---~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd 226 (495)
T TIGR01241 159 VGRQRGAGLGGGNDEREQTLNQ-LLV--------EMDGF---GTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPD 226 (495)
T ss_pred hhhccccCcCCccHHHHHHHHH-HHh--------hhccc---cCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCC
Confidence 9987653211 1122233333 333 45555 445679999999999999999999999999999 599
Q ss_pred HHHHHHHHHhhhCCC----CCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHH---HHhHHhHHHHHHHHhcCCCC-C
Q 013704 310 REDRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK---WISEVGIERIGKRLVNSKEG-P 381 (438)
Q Consensus 310 ~e~R~~Il~~~l~~~----~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~---~i~~~~~e~i~~~~~~~~~~-~ 381 (438)
.++|.+||+.++... +++.+.++..+.+|+|+||. +++.++...++++ .+...+++....++....+. .
T Consensus 227 ~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~---~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~~~~~~~ 303 (495)
T TIGR01241 227 IKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLA---NLLNEAALLAARKNKTEITMNDIEEAIDRVIAGPEKKS 303 (495)
T ss_pred HHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHH---HHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhccccccc
Confidence 999999999887653 45677899999999999999 7777776666554 35555666666665533221 1
Q ss_pred CCCCCccccHHHHHHHHhhhhhh
Q 013704 382 PTFEQPKMTLDKLLEYGRMLVQE 404 (438)
Q Consensus 382 p~f~~~~~~~~~ll~~~~~lv~e 404 (438)
+.+.+......+.+|+||.++..
T Consensus 304 ~~~~~~~~~~~A~hEaGhAlv~~ 326 (495)
T TIGR01241 304 RVISEKEKKLVAYHEAGHALVGL 326 (495)
T ss_pred ccccHHHHHHHHHHHHhHHHHHH
Confidence 22222333456778999987653
No 29
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=2.9e-30 Score=279.61 Aligned_cols=234 Identities=23% Similarity=0.315 Sum_probs=182.3
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~ 233 (438)
.+.+.|+++||+||||||||++|+++|++++.+++.++++++...+.|.....++.+|+.|. .+.||||||||+|+
T Consensus 211 ~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~----~~~P~ILfIDEID~ 286 (638)
T CHL00176 211 VGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAK----ENSPCIVFIDEIDA 286 (638)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHh----cCCCcEEEEecchh
Confidence 36678999999999999999999999999999999999999988899988889999999987 89999999999999
Q ss_pred cccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCHH
Q 013704 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 311 (438)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e 311 (438)
++.+++..... .+....++|.+++. .++|+ ....++.||+|||+++.||++|+||||||+.+. +|+.+
T Consensus 287 l~~~r~~~~~~--~~~e~~~~L~~LL~-----~~dg~---~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~ 356 (638)
T CHL00176 287 VGRQRGAGIGG--GNDEREQTLNQLLT-----EMDGF---KGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDRE 356 (638)
T ss_pred hhhcccCCCCC--CcHHHHHHHHHHHh-----hhccc---cCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHH
Confidence 98776432111 11222233444443 55665 445789999999999999999999999999998 59999
Q ss_pred HHHHHHHhhhCCC----CCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHH---HhHHhHHHHHHHHhcCCCCCCCC
Q 013704 312 DRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW---ISEVGIERIGKRLVNSKEGPPTF 384 (438)
Q Consensus 312 ~R~~Il~~~l~~~----~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~---i~~~~~e~i~~~~~~~~~~~p~f 384 (438)
+|.+||+.++... +++...++..+.+|+|+||. .++.++...+.|+- +...+++....+++...++.+..
T Consensus 357 ~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~---~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g~~~~~~~ 433 (638)
T CHL00176 357 GRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLA---NLLNEAAILTARRKKATITMKEIDTAIDRVIAGLEGTPLE 433 (638)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHH---HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhhhccCccc
Confidence 9999999888753 34456788888999999999 66766665555443 45557777777766544443333
Q ss_pred CCccccHHHHHHHHhhhhhh
Q 013704 385 EQPKMTLDKLLEYGRMLVQE 404 (438)
Q Consensus 385 ~~~~~~~~~ll~~~~~lv~e 404 (438)
.......-+.+|+||+++..
T Consensus 434 ~~~~~~~vA~hEaGhA~v~~ 453 (638)
T CHL00176 434 DSKNKRLIAYHEVGHAIVGT 453 (638)
T ss_pred cHHHHHHHHHHhhhhHHHHh
Confidence 33445677889999998764
No 30
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=7.1e-30 Score=265.66 Aligned_cols=208 Identities=19% Similarity=0.313 Sum_probs=173.0
Q ss_pred CCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 013704 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (438)
Q Consensus 153 ~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (438)
..++.+|.++|||||||||||++|+++|++++.+|+.+.++++.++|.|+.+..++.+|+.|. .+.||||||||+|
T Consensus 211 ~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~----~~~P~ILfIDEID 286 (438)
T PTZ00361 211 DIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAE----ENAPSIVFIDEID 286 (438)
T ss_pred hcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHH----hCCCcEEeHHHHH
Confidence 347889999999999999999999999999999999999999999999999999999999887 8899999999999
Q ss_pred ccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCH
Q 013704 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 310 (438)
Q Consensus 233 ~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~ 310 (438)
+++.++... .....+.+..++++++. +++|+ ....++.||+|||+++.||++++|+||||+.|+ .|+.
T Consensus 287 ~l~~kR~~~--~sgg~~e~qr~ll~LL~-----~Ldg~---~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~ 356 (438)
T PTZ00361 287 AIGTKRYDA--TSGGEKEIQRTMLELLN-----QLDGF---DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDE 356 (438)
T ss_pred HHhccCCCC--CCcccHHHHHHHHHHHH-----HHhhh---cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCH
Confidence 999876431 11222344455555555 56665 445689999999999999999999999999999 4999
Q ss_pred HHHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHH---HhHHhHHHHHHHHhcC
Q 013704 311 EDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW---ISEVGIERIGKRLVNS 377 (438)
Q Consensus 311 e~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~---i~~~~~e~i~~~~~~~ 377 (438)
++|.+||+.++.+ .+++.++++..+++|+|+||. ++|..+...++++. +...+++...++++..
T Consensus 357 ~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~---~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 357 KTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIK---AICTEAGLLALRERRMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred HHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHH---HHHHHHHHHHHHhcCCccCHHHHHHHHHHHHhh
Confidence 9999999977754 467788999999999999999 88888888887763 5555776666665543
No 31
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.5e-30 Score=263.69 Aligned_cols=271 Identities=18% Similarity=0.210 Sum_probs=203.3
Q ss_pred hccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCC
Q 013704 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 200 (438)
Q Consensus 121 r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~ 200 (438)
++..|+.+.+.......+.+.+++...+.-+-..-..+++++||.||||+|||+|++|||.+.++.|+.++++.|.++|+
T Consensus 148 ~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~ 227 (428)
T KOG0740|consen 148 RNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYV 227 (428)
T ss_pred CcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhcc
Confidence 33444555443333333333333333333222222455699999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCce
Q 013704 201 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVP 280 (438)
Q Consensus 201 Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~ 280 (438)
|+.++++|.+|.-|+ ..+|+|+||||+|+++..|.+ .....+.+....+|++ ++|. .....++|.
T Consensus 228 Ge~eK~vralf~vAr----~~qPsvifidEidslls~Rs~-~e~e~srr~ktefLiq---------~~~~-~s~~~drvl 292 (428)
T KOG0740|consen 228 GESEKLVRALFKVAR----SLQPSVIFIDEIDSLLSKRSD-NEHESSRRLKTEFLLQ---------FDGK-NSAPDDRVL 292 (428)
T ss_pred ChHHHHHHHHHHHHH----hcCCeEEEechhHHHHhhcCC-cccccchhhhhHHHhh---------hccc-cCCCCCeEE
Confidence 999999999999888 999999999999999998854 4555666777777765 3443 224457999
Q ss_pred EEEecCCCCCCCccccCCCcceEEEe--cCCHHHHHHHHHhhhCCCC-----CCHHHHHHHHccCCcchhHHHHHHHHhh
Q 013704 281 IIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTDN-----VPKEDIVKLVDTFPGQSIDFFGALRARV 353 (438)
Q Consensus 281 VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e~R~~Il~~~l~~~~-----v~~~~la~l~~~~sgadi~~~~al~~~~ 353 (438)
||+|||+|+.+|.+++| ||.++++ +|+.+.|..+|+.++.... .+.+.+++++++|+|.||. ++|..+
T Consensus 293 vigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~---~l~kea 367 (428)
T KOG0740|consen 293 VIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDIT---ALCKEA 367 (428)
T ss_pred EEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHH---HHHHHh
Confidence 99999999999999999 9999999 5999999999999887652 3355799999999999999 999998
Q ss_pred hhHHHHHHHhHHhHHHHHHHHhcCCCCCCCCCCccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhc
Q 013704 354 YDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLS 419 (438)
Q Consensus 354 ~~~air~~i~~~~~e~i~~~~~~~~~~~p~f~~~~~~~~~ll~~~~~lv~eq~~v~~~~l~~~y~~ 419 (438)
.+..+|..-....++. +.....+|.+.+ +.+...+..++++..+.+.++..+..+|..
T Consensus 368 ~~~p~r~~~~~~~~~~-----~~~~~~r~i~~~---df~~a~~~i~~~~s~~~l~~~~~~~~~fg~ 425 (428)
T KOG0740|consen 368 AMGPLRELGGTTDLEF-----IDADKIRPITYP---DFKNAFKNIKPSVSLEGLEKYEKWDKEFGS 425 (428)
T ss_pred hcCchhhcccchhhhh-----cchhccCCCCcc---hHHHHHHhhccccCccccchhHHHhhhhcc
Confidence 8777665433211111 122222333322 456677888899999999999999888743
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.96 E-value=9.9e-29 Score=260.61 Aligned_cols=188 Identities=21% Similarity=0.281 Sum_probs=149.2
Q ss_pred cCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc----------eEEEeccccccCCCCChHHHHHHHHHHHHHHHHhC
Q 013704 152 NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 221 (438)
Q Consensus 152 ~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~----------~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~ 221 (438)
...++++|+|+|||||||||||++|+++|++++.+ |+.++.+++.++|.|++++.++.+|+.|+..+..+
T Consensus 209 ~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g 288 (512)
T TIGR03689 209 REYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDG 288 (512)
T ss_pred HhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcC
Confidence 34578899999999999999999999999998654 56677888999999999999999999998666677
Q ss_pred CceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcc
Q 013704 222 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM 301 (438)
Q Consensus 222 ~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRf 301 (438)
.||||||||+|+++.+++........ +.+...|++ .++|+ ....+++||+|||+++.||+||+|||||
T Consensus 289 ~p~IIfIDEiD~L~~~R~~~~s~d~e-~~il~~LL~--------~LDgl---~~~~~ViVI~ATN~~d~LDpALlRpGRf 356 (512)
T TIGR03689 289 RPVIVFFDEMDSIFRTRGSGVSSDVE-TTVVPQLLS--------ELDGV---ESLDNVIVIGASNREDMIDPAILRPGRL 356 (512)
T ss_pred CCceEEEehhhhhhcccCCCccchHH-HHHHHHHHH--------Hhccc---ccCCceEEEeccCChhhCCHhhcCcccc
Confidence 89999999999999876533222333 333345555 45555 4457899999999999999999999999
Q ss_pred eEEEe--cCCHHHHHHHHHhhhCCCCCCHHHHHHHHccCCcchhHHHHHHHHhhhh
Q 013704 302 EKFYW--APTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYD 355 (438)
Q Consensus 302 d~~i~--lP~~e~R~~Il~~~l~~~~v~~~~la~l~~~~sgadi~~~~al~~~~~~ 355 (438)
|..|+ .|+.++|.+||+.++... +..+.......++.++++. +++.++..
T Consensus 357 D~~I~~~~Pd~e~r~~Il~~~l~~~-l~l~~~l~~~~g~~~a~~~---al~~~av~ 408 (512)
T TIGR03689 357 DVKIRIERPDAEAAADIFSKYLTDS-LPLDADLAEFDGDREATAA---ALIQRAVD 408 (512)
T ss_pred ceEEEeCCCCHHHHHHHHHHHhhcc-CCchHHHHHhcCCCHHHHH---HHHHHHHH
Confidence 99988 599999999999988653 2223323446888888888 66666543
No 33
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.3e-29 Score=260.25 Aligned_cols=218 Identities=23% Similarity=0.304 Sum_probs=180.1
Q ss_pred CCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCC-ceeEEeccc
Q 013704 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK-MCCLFINDL 231 (438)
Q Consensus 153 ~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~-p~ILfIDEi 231 (438)
..++++|+|+|+|||||||||++++++|++.++.++.++++++.+++.|++++++|+.|++|. +++ |+||||||+
T Consensus 212 s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~----k~~~psii~IdEl 287 (693)
T KOG0730|consen 212 SIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEAL----KFQVPSIIFIDEL 287 (693)
T ss_pred hcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHh----ccCCCeeEeHHhH
Confidence 358899999999999999999999999999999999999999999999999999999999998 888 999999999
Q ss_pred cccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCC
Q 013704 232 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 309 (438)
Q Consensus 232 D~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~ 309 (438)
|++++++.. ... ..+++.+.|+.|+| |+ ....+++||+|||+|+.||++++| ||||+.+. +|+
T Consensus 288 d~l~p~r~~-~~~--~e~Rv~sqlltL~d--------g~---~~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~ 352 (693)
T KOG0730|consen 288 DALCPKREG-ADD--VESRVVSQLLTLLD--------GL---KPDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPG 352 (693)
T ss_pred hhhCCcccc-cch--HHHHHHHHHHHHHh--------hC---cCcCcEEEEEecCCccccChhhhc-CCCcceeeecCCC
Confidence 999998764 222 45677788888777 23 356899999999999999999999 99999999 599
Q ss_pred HHHHHHHHHhhhCCC----CCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHHHhHHhHHHHHHHHhcCCCCCCCCC
Q 013704 310 REDRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFE 385 (438)
Q Consensus 310 ~e~R~~Il~~~l~~~----~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~i~~~~~e~i~~~~~~~~~~~p~f~ 385 (438)
..+|.+|++.+.+.. ++++++++..+.+|.|+|+. ++|..+...++|+ +..+++.....+.-+....+..+
T Consensus 353 ~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~---~l~~ea~~~~~r~--~~~~~~~A~~~i~psa~Re~~ve 427 (693)
T KOG0730|consen 353 SDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLA---ALCREASLQATRR--TLEIFQEALMGIRPSALREILVE 427 (693)
T ss_pred chhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHH---HHHHHHHHHHhhh--hHHHHHHHHhcCCchhhhheecc
Confidence 999999999877653 45677899999999999999 9999999999998 22222222111111111123356
Q ss_pred CccccHHHH
Q 013704 386 QPKMTLDKL 394 (438)
Q Consensus 386 ~~~~~~~~l 394 (438)
.|+.+++++
T Consensus 428 ~p~v~W~dI 436 (693)
T KOG0730|consen 428 MPNVSWDDI 436 (693)
T ss_pred CCCCChhhc
Confidence 688888876
No 34
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=1.5e-28 Score=251.44 Aligned_cols=191 Identities=24% Similarity=0.342 Sum_probs=159.9
Q ss_pred CCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 013704 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (438)
Q Consensus 153 ~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (438)
..+..+|+|+|||||||||||++|+++|++++.+++.+.++++...|.|+....++.+|+.+. ...|+||||||+|
T Consensus 150 ~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~il~iDEiD 225 (364)
T TIGR01242 150 EVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAK----EKAPSIIFIDEID 225 (364)
T ss_pred hcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHH----hcCCcEEEhhhhh
Confidence 457788999999999999999999999999999999999999999999999999999999887 8899999999999
Q ss_pred ccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCH
Q 013704 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 310 (438)
Q Consensus 233 ~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~ 310 (438)
.++.++.+.. ......+..++.+++. ++++. ....++.||+|||+++.+|++++|+||||+.++ .|+.
T Consensus 226 ~l~~~~~~~~--~~~~~~~~~~l~~ll~-----~ld~~---~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~ 295 (364)
T TIGR01242 226 AIAAKRTDSG--TSGDREVQRTLMQLLA-----ELDGF---DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDF 295 (364)
T ss_pred hhccccccCC--CCccHHHHHHHHHHHH-----HhhCC---CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCH
Confidence 9987654321 1223344455555554 45554 345689999999999999999999999999988 5999
Q ss_pred HHHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHH
Q 013704 311 EDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360 (438)
Q Consensus 311 e~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~ 360 (438)
++|.+||+.+... .+++.+.++..+++|+|+||. ++|..+...++++
T Consensus 296 ~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~---~l~~~A~~~a~~~ 346 (364)
T TIGR01242 296 EGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLK---AICTEAGMFAIRE 346 (364)
T ss_pred HHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHh
Confidence 9999999977754 346788999999999999999 7888877777665
No 35
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=2.7e-28 Score=265.89 Aligned_cols=231 Identities=19% Similarity=0.277 Sum_probs=181.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l 234 (438)
+...|+|+||+||||||||++++++|++++.+|+.++++++...+.|.....++.+|..|. ...||||||||+|++
T Consensus 181 ~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~----~~~P~IifIDEiD~l 256 (644)
T PRK10733 181 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAK----KAAPCIIFIDEIDAV 256 (644)
T ss_pred CCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHH----hcCCcEEEehhHhhh
Confidence 4577899999999999999999999999999999999999999999999999999999887 889999999999999
Q ss_pred ccCCCCCcc--ccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCH
Q 013704 235 AGRMGGTTQ--YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 310 (438)
Q Consensus 235 ~~~r~~~~~--~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~ 310 (438)
+.+++.... .....+.++++|. +|+|+ ....+++||+|||+++.||++++||||||+.++ +|+.
T Consensus 257 ~~~r~~~~~g~~~~~~~~ln~lL~---------~mdg~---~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~ 324 (644)
T PRK10733 257 GRQRGAGLGGGHDEREQTLNQMLV---------EMDGF---EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 324 (644)
T ss_pred hhccCCCCCCCchHHHHHHHHHHH---------hhhcc---cCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCH
Confidence 887653211 1122334444332 46666 446789999999999999999999999999999 5999
Q ss_pred HHHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHH---HhHHhHHHHHHHHhcCCCC-CC
Q 013704 311 EDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW---ISEVGIERIGKRLVNSKEG-PP 382 (438)
Q Consensus 311 e~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~---i~~~~~e~i~~~~~~~~~~-~p 382 (438)
++|.+||+.++.. .+++...++..+.+|+|+||. +++..+...++|+- +...+++....++.-.... ..
T Consensus 325 ~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~---~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~g~~~~~~ 401 (644)
T PRK10733 325 RGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLA---NLVNEAALFAARGNKRVVSMVEFEKAKDKIMMGAERRSM 401 (644)
T ss_pred HHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHH---HHHHHHHHHHHHcCCCcccHHHHHHHHHHHhcccccccc
Confidence 9999999988875 356677899999999999999 88888887777643 4444666665555432221 11
Q ss_pred CCCCccccHHHHHHHHhhhhhh
Q 013704 383 TFEQPKMTLDKLLEYGRMLVQE 404 (438)
Q Consensus 383 ~f~~~~~~~~~ll~~~~~lv~e 404 (438)
.....+....+.+|+||+++..
T Consensus 402 ~~~~~~~~~~a~he~gha~~~~ 423 (644)
T PRK10733 402 VMTEAQKESTAYHEAGHAIIGR 423 (644)
T ss_pred cccHHHHHHHHHHHHHHHHHHH
Confidence 2222344566789999998763
No 36
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.4e-26 Score=253.77 Aligned_cols=191 Identities=19% Similarity=0.260 Sum_probs=162.5
Q ss_pred CCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEE
Q 013704 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227 (438)
Q Consensus 153 ~~~~~~p~glLL~GPPGtGKT~lA~aIA~~l-----g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILf 227 (438)
..++.+|+|+|+|||||||||+.|+++|..+ .+.|+.-.+.+..++|+|+.++.++.+|++|. +.+|+|+|
T Consensus 293 ~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~----k~qPSIIf 368 (1080)
T KOG0732|consen 293 NFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQ----KTQPSIIF 368 (1080)
T ss_pred hcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHHh----ccCceEEe
Confidence 4579999999999999999999999999995 45778888899999999999999999999998 99999999
Q ss_pred eccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe-
Q 013704 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW- 306 (438)
Q Consensus 228 IDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~- 306 (438)
+||||-+++.|.. -|..... -+..+|+.| |||+ ..++.|.||+|||+++.+|+||+||||||+.+|
T Consensus 369 fdeIdGlapvrSs-kqEqih~-SIvSTLLaL--------mdGl---dsRgqVvvigATnRpda~dpaLRRPgrfdref~f 435 (1080)
T KOG0732|consen 369 FDEIDGLAPVRSS-KQEQIHA-SIVSTLLAL--------MDGL---DSRGQVVVIGATNRPDAIDPALRRPGRFDREFYF 435 (1080)
T ss_pred ccccccccccccc-hHHHhhh-hHHHHHHHh--------ccCC---CCCCceEEEcccCCccccchhhcCCcccceeEee
Confidence 9999999998753 2333333 344677774 4577 778999999999999999999999999999999
Q ss_pred -cCCHHHHHHHHHhhhCC--CCCC---HHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHHHh
Q 013704 307 -APTREDRIGVCSGIFRT--DNVP---KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 363 (438)
Q Consensus 307 -lP~~e~R~~Il~~~l~~--~~v~---~~~la~l~~~~sgadi~~~~al~~~~~~~air~~i~ 363 (438)
+|+.++|.+|+.....+ ..+. ++.+++.+.+|.|+||. +||..+...++++-..
T Consensus 436 ~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlk---aLCTeAal~~~~r~~P 495 (1080)
T KOG0732|consen 436 PLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLK---ALCTEAALIALRRSFP 495 (1080)
T ss_pred eCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHH---HHHHHHhhhhhccccC
Confidence 69999999999866654 3344 34688999999999988 9999998888776443
No 37
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=5e-25 Score=244.06 Aligned_cols=191 Identities=23% Similarity=0.342 Sum_probs=161.7
Q ss_pred CCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 013704 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (438)
Q Consensus 153 ~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (438)
..++.+|+++|||||||||||++|+++|++++.+++.++++++.+++.|+.+..++.+|+.|. ...|+||||||+|
T Consensus 206 ~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~----~~~p~il~iDEid 281 (733)
T TIGR01243 206 HLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAE----ENAPSIIFIDEID 281 (733)
T ss_pred hcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHH----hcCCcEEEeehhh
Confidence 457788999999999999999999999999999999999999999999999999999999887 8899999999999
Q ss_pred ccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCH
Q 013704 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 310 (438)
Q Consensus 233 ~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~ 310 (438)
.+++.+.. .. ....+.+.+.|+++++ +. .....+.||+|||+++.||++++|+|||+..++ +|+.
T Consensus 282 ~l~~~r~~-~~-~~~~~~~~~~Ll~~ld--------~l---~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~ 348 (733)
T TIGR01243 282 AIAPKREE-VT-GEVEKRVVAQLLTLMD--------GL---KGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDK 348 (733)
T ss_pred hhcccccC-Cc-chHHHHHHHHHHHHhh--------cc---ccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCH
Confidence 99987653 12 2223455566777555 22 334678999999999999999999999999888 5999
Q ss_pred HHHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHHHh
Q 013704 311 EDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 363 (438)
Q Consensus 311 e~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~i~ 363 (438)
++|.+||+.+... .+++.+.++..+.+|+|+++. +++..+...++++.+.
T Consensus 349 ~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~---~l~~~a~~~al~r~~~ 402 (733)
T TIGR01243 349 RARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLA---ALAKEAAMAALRRFIR 402 (733)
T ss_pred HHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHH---HHHHHHHHHHHHHHhh
Confidence 9999999977654 356678899999999999998 7888888777777654
No 38
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.90 E-value=2.6e-23 Score=179.89 Aligned_cols=130 Identities=26% Similarity=0.386 Sum_probs=112.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCC-ceeEEeccccccccCCCC
Q 013704 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK-MCCLFINDLDAGAGRMGG 240 (438)
Q Consensus 162 lLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~-p~ILfIDEiD~l~~~r~~ 240 (438)
|||+||||||||++|+.+|+.++.+++.++++++.+.+.++..+.++.+|+.+. ... |+||||||+|.+.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~vl~iDe~d~l~~~~-- 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAK----KSAKPCVLFIDEIDKLFPKS-- 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHH----HTSTSEEEEEETGGGTSHHC--
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccccccccccccccccccccccc----ccccceeeeeccchhccccc--
Confidence 699999999999999999999999999999999999999999999999999986 665 9999999999999876
Q ss_pred CccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEecC
Q 013704 241 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 308 (438)
Q Consensus 241 ~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~lP 308 (438)
........+.+.+.|++.+++ ......+++||+|||+++.++++++| +||++.+++|
T Consensus 75 ~~~~~~~~~~~~~~L~~~l~~----------~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~ 131 (132)
T PF00004_consen 75 QPSSSSFEQRLLNQLLSLLDN----------PSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFP 131 (132)
T ss_dssp STSSSHHHHHHHHHHHHHHHT----------TTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-
T ss_pred ccccccccccccceeeecccc----------cccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcC
Confidence 234455667777888887772 12234679999999999999999998 8999999876
No 39
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=8.2e-20 Score=186.79 Aligned_cols=176 Identities=18% Similarity=0.198 Sum_probs=130.2
Q ss_pred HhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEE
Q 013704 148 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227 (438)
Q Consensus 148 k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILf 227 (438)
+.|...-|..-.+|-|||||||||||++..|+|++++..++.+..+++.. . .. ++.+... ....+||+
T Consensus 224 k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~----n-~d-Lr~LL~~------t~~kSIiv 291 (457)
T KOG0743|consen 224 KDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL----D-SD-LRHLLLA------TPNKSILL 291 (457)
T ss_pred chHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC----c-HH-HHHHHHh------CCCCcEEE
Confidence 34445557666799999999999999999999999999999988776542 2 22 5666553 56779999
Q ss_pred eccccccccCCCCCcc---ccc--hhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcce
Q 013704 228 INDLDAGAGRMGGTTQ---YTV--NNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME 302 (438)
Q Consensus 228 IDEiD~l~~~r~~~~~---~~~--~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd 302 (438)
|+|||+-+.-+....+ ... ..+...+-|+| .+||.|..+. ...+||.|||+++.|||||+||||||
T Consensus 292 IEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLN--------fiDGlwSscg-~ERIivFTTNh~EkLDPALlRpGRmD 362 (457)
T KOG0743|consen 292 IEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLN--------FLDGLWSSCG-DERIIVFTTNHKEKLDPALLRPGRMD 362 (457)
T ss_pred EeecccccccccccccccccccCCcceeehHHhhh--------hhccccccCC-CceEEEEecCChhhcCHhhcCCCcce
Confidence 9999998653221111 111 12345555666 6679998665 55678899999999999999999999
Q ss_pred EEEec--CCHHHHHHHHHhhhCCC--CCCHHHHHHHHccC--CcchhH
Q 013704 303 KFYWA--PTREDRIGVCSGIFRTD--NVPKEDIVKLVDTF--PGQSID 344 (438)
Q Consensus 303 ~~i~l--P~~e~R~~Il~~~l~~~--~v~~~~la~l~~~~--sgadi~ 344 (438)
..|++ .+.++-..+.+.++.-. ..=.+++.++.++- +.|++.
T Consensus 363 mhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~~tPA~V~ 410 (457)
T KOG0743|consen 363 MHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETEVTPAQVA 410 (457)
T ss_pred eEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCccCHHHHH
Confidence 99995 79999999999999874 33356777777765 444443
No 40
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.5e-19 Score=177.52 Aligned_cols=204 Identities=16% Similarity=0.267 Sum_probs=145.7
Q ss_pred CchhhhhcccccchhhhhccccccccCCCCCChhhHHHHHHHHH--HhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHH
Q 013704 104 GTHYAVMSSYDYISQGLRQYSLDNTLDGLYIAPAFMDKVVVHIT--KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFA 181 (438)
Q Consensus 104 g~~~~i~~~~~~~~~~~r~~~~~~~~~~~~i~~~~~d~~~~~i~--k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~ 181 (438)
|++.=+.++.-|.+...-.=-|++++.+..+..+++.-+..... .......-+...+-||||||||||||+||+++|.
T Consensus 120 ~~esii~an~w~LPa~eF~glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQ 199 (423)
T KOG0744|consen 120 GKESIIAANHWYLPAAEFDGLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQ 199 (423)
T ss_pred chhhhhhhhheeccchhhhhhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHH
Confidence 44444444444555322222346666665555555443222111 1111112245568899999999999999999999
Q ss_pred HhCC---------ceEEEeccccccCCCCChHHHHHHHHHHHHHHHH-hCCceeEEeccccccccCCCC---Cccccchh
Q 013704 182 KMGI---------NPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGG---TTQYTVNN 248 (438)
Q Consensus 182 ~lg~---------~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~-~~~p~ILfIDEiD~l~~~r~~---~~~~~~~~ 248 (438)
++.+ .++.+++..|.++|.+|+++++.++|++..++++ .....+++|||+++++..|.. .++.+-.-
T Consensus 200 kLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaI 279 (423)
T KOG0744|consen 200 KLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAI 279 (423)
T ss_pred hheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHH
Confidence 9643 4688999999999999999999999999998887 566678889999999765422 12223334
Q ss_pred HHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEec--CCHHHHHHHHHhhh
Q 013704 249 QMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIF 321 (438)
Q Consensus 249 ~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~l--P~~e~R~~Il~~~l 321 (438)
|.|++.|.+|.. . ...++|.+++|+|-.+.||-|+.. |-|...++ |+.+.|.+|++..+
T Consensus 280 RvVNalLTQlDr---------l---K~~~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 280 RVVNALLTQLDR---------L---KRYPNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCI 340 (423)
T ss_pred HHHHHHHHHHHH---------h---ccCCCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHH
Confidence 677766665433 3 667999999999999999999999 99999884 99999999998554
No 41
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=6.5e-18 Score=180.24 Aligned_cols=149 Identities=21% Similarity=0.300 Sum_probs=125.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEecccccc---------CCCCChHHHHHHHHHHHHHHHHhCCceeEEec
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------GNAGEPAKLIRQRYREAADIIKKGKMCCLFIN 229 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s---------~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfID 229 (438)
..+++|+||||+|||+|++.||+.+|..|++++.+.+.+ -|+|.....|-+..++| .-...+++||
T Consensus 350 GpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka-----~~~NPv~LLD 424 (782)
T COG0466 350 GPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKA-----GVKNPVFLLD 424 (782)
T ss_pred CcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHh-----CCcCCeEEee
Confidence 368999999999999999999999999999999987764 38887777777777777 4556688899
Q ss_pred cccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCC--CCCceEEEecCCCCCCCccccCCCcceEEEe-
Q 013704 230 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE--NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW- 306 (438)
Q Consensus 230 EiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~--~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~- 306 (438)
|||++.....|.. .+.|++.+|++.|..+...|.+.. .++|++|+|+|..++||.||+. ||+.+-.
T Consensus 425 EIDKm~ss~rGDP---------aSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RMEiI~ls 493 (782)
T COG0466 425 EIDKMGSSFRGDP---------ASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RMEVIRLS 493 (782)
T ss_pred chhhccCCCCCCh---------HHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhc--ceeeeeec
Confidence 9999987744323 378999999999999999988754 4899999999999999999999 9965444
Q ss_pred cCCHHHHHHHHHhhhCC
Q 013704 307 APTREDRIGVCSGIFRT 323 (438)
Q Consensus 307 lP~~e~R~~Il~~~l~~ 323 (438)
=.+.++.++|-+.++-.
T Consensus 494 gYt~~EKl~IAk~~LiP 510 (782)
T COG0466 494 GYTEDEKLEIAKRHLIP 510 (782)
T ss_pred CCChHHHHHHHHHhcch
Confidence 37899999999877753
No 42
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=6e-18 Score=170.40 Aligned_cols=194 Identities=18% Similarity=0.259 Sum_probs=137.9
Q ss_pred cCCCCCChhhHHHHHHHHHHhhhcCC-CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHH
Q 013704 129 LDGLYIAPAFMDKVVVHITKNFLNLP-NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 207 (438)
Q Consensus 129 ~~~~~i~~~~~d~~~~~i~k~~l~~~-~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~i 207 (438)
.++..++|.+- +-+.+++..-.+.. +..+-++||||||||||||+.|+-||...|+.+-.|.++++. ..-.+....|
T Consensus 354 l~~ViL~psLe-~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA-PlG~qaVTki 431 (630)
T KOG0742|consen 354 LEGVILHPSLE-KRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA-PLGAQAVTKI 431 (630)
T ss_pred cCCeecCHHHH-HHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc-ccchHHHHHH
Confidence 34445556543 33344443332222 233448999999999999999999999999999999998875 2323556789
Q ss_pred HHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchh-HHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecC
Q 013704 208 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNN-QMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN 286 (438)
Q Consensus 208 r~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~-~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN 286 (438)
+++|+.|. +..+.-+|||||.|+++..|.. +..+... ..++++|.. .-.....+.++++||
T Consensus 432 H~lFDWak---kS~rGLllFIDEADAFLceRnk-tymSEaqRsaLNAlLfR--------------TGdqSrdivLvlAtN 493 (630)
T KOG0742|consen 432 HKLFDWAK---KSRRGLLLFIDEADAFLCERNK-TYMSEAQRSALNALLFR--------------TGDQSRDIVLVLATN 493 (630)
T ss_pred HHHHHHHh---hcccceEEEehhhHHHHHHhch-hhhcHHHHHHHHHHHHH--------------hcccccceEEEeccC
Confidence 99999886 2455669999999999887653 3333333 344444433 113456777888999
Q ss_pred CCCCCCccccCCCcceEEEe--cCCHHHHHHHHHhhhCC--------C-------------------CCC----HHHHHH
Q 013704 287 DFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRT--------D-------------------NVP----KEDIVK 333 (438)
Q Consensus 287 ~~~~Ld~aLlR~GRfd~~i~--lP~~e~R~~Il~~~l~~--------~-------------------~v~----~~~la~ 333 (438)
+|..+|.++-. |+|..++ +|..++|..|+..|+.+ . +.+ +.+.++
T Consensus 494 rpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAk 571 (630)
T KOG0742|consen 494 RPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAK 571 (630)
T ss_pred CccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHH
Confidence 99999999999 9999999 69999999999866542 0 001 235788
Q ss_pred HHccCCcchhH
Q 013704 334 LVDTFPGQSID 344 (438)
Q Consensus 334 l~~~~sgadi~ 344 (438)
.+++|+|..|.
T Consensus 572 kTeGfSGREia 582 (630)
T KOG0742|consen 572 KTEGFSGREIA 582 (630)
T ss_pred hccCCcHHHHH
Confidence 88999999887
No 43
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.9e-17 Score=176.06 Aligned_cols=152 Identities=20% Similarity=0.237 Sum_probs=123.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEecccccc---------CCCCChHHHHHHHHHHHHHHHHhCCcee
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------GNAGEPAKLIRQRYREAADIIKKGKMCC 225 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s---------~~~Ge~~~~ir~~f~~A~~~~~~~~p~I 225 (438)
+.-..++++|+||||+|||++++.||..+|..|+++|.+.+.+ -|+|.....|-+..+.. .-...+
T Consensus 434 gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v-----~t~NPl 508 (906)
T KOG2004|consen 434 GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKV-----KTENPL 508 (906)
T ss_pred ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhh-----CCCCce
Confidence 4445678999999999999999999999999999999877654 37887666666666655 344557
Q ss_pred EEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccC--CCCCceEEEecCCCCCCCccccCCCcceE
Q 013704 226 LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE--ENPRVPIIVTGNDFSTLYAPLIRDGRMEK 303 (438)
Q Consensus 226 LfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~--~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~ 303 (438)
++|||+|++.....|. -.+.|++++|++.|..+-..|... +.++|.+|||+|..+.||+||+. ||+.
T Consensus 509 iLiDEvDKlG~g~qGD---------PasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RMEv 577 (906)
T KOG2004|consen 509 ILIDEVDKLGSGHQGD---------PASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RMEV 577 (906)
T ss_pred EEeehhhhhCCCCCCC---------hHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhh--hhhe
Confidence 7899999998432222 237899999999999988888754 45899999999999999999999 9965
Q ss_pred EEec--CCHHHHHHHHHhhhCC
Q 013704 304 FYWA--PTREDRIGVCSGIFRT 323 (438)
Q Consensus 304 ~i~l--P~~e~R~~Il~~~l~~ 323 (438)
|.+ ...++..+|.+.++-.
T Consensus 578 -IelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 578 -IELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred -eeccCccHHHHHHHHHHhhhh
Confidence 555 6788999999988754
No 44
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.74 E-value=9e-17 Score=157.28 Aligned_cols=151 Identities=19% Similarity=0.149 Sum_probs=110.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---C----CceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEec
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM---G----INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIN 229 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l---g----~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfID 229 (438)
..+.+++|+||||||||++|+++|+.+ + .+++.++++++.+.|+|+.+..++++|+.|. ++|||||
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~-------~~VL~ID 112 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKAL-------GGVLFID 112 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhcc-------CCEEEEe
Confidence 345689999999999999999999874 2 3678899999999999999999999998653 6899999
Q ss_pred cccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCC-----CCCCccccCCCcceEE
Q 013704 230 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-----STLYAPLIRDGRMEKF 304 (438)
Q Consensus 230 EiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~-----~~Ld~aLlR~GRfd~~ 304 (438)
|+|.+.... +.. ..+....+|+..++ ....++.+|++++.. ..++|+|++ ||+..
T Consensus 113 E~~~L~~~~----~~~-~~~~~i~~Ll~~~e-------------~~~~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~ 172 (261)
T TIGR02881 113 EAYSLARGG----EKD-FGKEAIDTLVKGME-------------DNRNEFVLILAGYSDEMDYFLSLNPGLRS--RFPIS 172 (261)
T ss_pred chhhhccCC----ccc-hHHHHHHHHHHHHh-------------ccCCCEEEEecCCcchhHHHHhcChHHHh--ccceE
Confidence 999996321 111 12344456666444 334556666665432 247889999 99887
Q ss_pred Eec--CCHHHHHHHHHhhhCCCC--CCHHHHHHH
Q 013704 305 YWA--PTREDRIGVCSGIFRTDN--VPKEDIVKL 334 (438)
Q Consensus 305 i~l--P~~e~R~~Il~~~l~~~~--v~~~~la~l 334 (438)
+.+ ++.+++.+|++.++...+ ++.+.+..+
T Consensus 173 i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l 206 (261)
T TIGR02881 173 IDFPDYTVEELMEIAERMVKEREYKLTEEAKWKL 206 (261)
T ss_pred EEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHH
Confidence 876 578999999998887544 444444444
No 45
>CHL00181 cbbX CbbX; Provisional
Probab=99.74 E-value=4.1e-17 Score=162.12 Aligned_cols=142 Identities=14% Similarity=0.131 Sum_probs=108.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---C----CceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecc
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM---G----INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 230 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l---g----~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDE 230 (438)
++.++||+||||||||++|+++|+.+ | .+++.++.+++.+.|.|+++..++.+|++|. ++||||||
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~-------ggVLfIDE 130 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAM-------GGVLFIDE 130 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHcc-------CCEEEEEc
Confidence 44679999999999999999999984 2 2588999999999999998888888887553 68999999
Q ss_pred ccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC-----CCCccccCCCcceEEE
Q 013704 231 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGRMEKFY 305 (438)
Q Consensus 231 iD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~-----~Ld~aLlR~GRfd~~i 305 (438)
+|.+...+.. .. ..+.+..+|+.+++ ....++.||++++... .++|+|++ ||+..+
T Consensus 131 ~~~l~~~~~~---~~-~~~e~~~~L~~~me-------------~~~~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i 191 (287)
T CHL00181 131 AYYLYKPDNE---RD-YGSEAIEILLQVME-------------NQRDDLVVIFAGYKDRMDKFYESNPGLSS--RIANHV 191 (287)
T ss_pred cchhccCCCc---cc-hHHHHHHHHHHHHh-------------cCCCCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceE
Confidence 9998754321 11 23456677777665 3346677888876322 34689999 999988
Q ss_pred ec--CCHHHHHHHHHhhhCCCC
Q 013704 306 WA--PTREDRIGVCSGIFRTDN 325 (438)
Q Consensus 306 ~l--P~~e~R~~Il~~~l~~~~ 325 (438)
++ ++.+++.+|++.++....
T Consensus 192 ~F~~~t~~el~~I~~~~l~~~~ 213 (287)
T CHL00181 192 DFPDYTPEELLQIAKIMLEEQQ 213 (287)
T ss_pred EcCCcCHHHHHHHHHHHHHHhc
Confidence 85 789999999999987643
No 46
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.72 E-value=8.1e-17 Score=178.65 Aligned_cols=171 Identities=18% Similarity=0.195 Sum_probs=126.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEEeccccc--cCCCCChHHHHHHHHHHHHHHHHhCCcee
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCC 225 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l----------g~~~i~vs~~~l~--s~~~Ge~~~~ir~~f~~A~~~~~~~~p~I 225 (438)
...+++|+||||||||++++++|+.+ +..++.++.+.+. .+|.|+.++.++++|+++. ...++|
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~----~~~~~I 277 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIE----KEPNAI 277 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHh----ccCCeE
Confidence 45678999999999999999999997 7778888888877 5789999999999999886 678999
Q ss_pred EEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCC-----CCCCCccccCCCc
Q 013704 226 LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND-----FSTLYAPLIRDGR 300 (438)
Q Consensus 226 LfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~-----~~~Ld~aLlR~GR 300 (438)
|||||+|.+.+.... ..++ ..+...|...+. ...+.+|++||. ...+|++|.| |
T Consensus 278 LfiDEih~l~~~g~~-~~~~---~~~~~~L~~~l~---------------~g~i~~IgaTt~~e~~~~~~~d~al~r--R 336 (731)
T TIGR02639 278 LFIDEIHTIVGAGAT-SGGS---MDASNLLKPALS---------------SGKLRCIGSTTYEEYKNHFEKDRALSR--R 336 (731)
T ss_pred EEEecHHHHhccCCC-CCcc---HHHHHHHHHHHh---------------CCCeEEEEecCHHHHHHHhhhhHHHHH--h
Confidence 999999999875321 1111 123334444332 467889998886 3468999999 9
Q ss_pred ceEEEe-cCCHHHHHHHHHhhhCC----C--CCCHHH---HHHHHccC------CcchhHHHHHHHHhh
Q 013704 301 MEKFYW-APTREDRIGVCSGIFRT----D--NVPKED---IVKLVDTF------PGQSIDFFGALRARV 353 (438)
Q Consensus 301 fd~~i~-lP~~e~R~~Il~~~l~~----~--~v~~~~---la~l~~~~------sgadi~~~~al~~~~ 353 (438)
|..+.. .|+.+++.+|++.+... . .++.+. ++.++.+| |+..|+++...++++
T Consensus 337 f~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~ 405 (731)
T TIGR02639 337 FQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASF 405 (731)
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhh
Confidence 975433 59999999999955432 2 355554 45556554 666788776666654
No 47
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.71 E-value=2.6e-16 Score=156.14 Aligned_cols=151 Identities=12% Similarity=0.115 Sum_probs=113.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC-------CceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecc
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMG-------INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 230 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg-------~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDE 230 (438)
+..+++|+||||||||++|+++|+.+. -+++.++++++.+.|.|+++..++.+|+.|. +++|||||
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~-------~gvL~iDE 129 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAM-------GGVLFIDE 129 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHcc-------CcEEEEec
Confidence 346899999999999999999998852 2688999999999999998888888888654 69999999
Q ss_pred ccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCC--CC---CCCccccCCCcceEEE
Q 013704 231 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND--FS---TLYAPLIRDGRMEKFY 305 (438)
Q Consensus 231 iD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~--~~---~Ld~aLlR~GRfd~~i 305 (438)
++.+.+.+.. ....+.+...|+++++ ....++.||++++. .+ .++|+|++ ||+..+
T Consensus 130 i~~L~~~~~~----~~~~~~~~~~Ll~~le-------------~~~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i 190 (284)
T TIGR02880 130 AYYLYRPDNE----RDYGQEAIEILLQVME-------------NQRDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHV 190 (284)
T ss_pred hhhhccCCCc----cchHHHHHHHHHHHHh-------------cCCCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEE
Confidence 9998654321 1123456667777665 33467788887753 23 24799999 999888
Q ss_pred ec--CCHHHHHHHHHhhhCCCC--CCHHHHHHH
Q 013704 306 WA--PTREDRIGVCSGIFRTDN--VPKEDIVKL 334 (438)
Q Consensus 306 ~l--P~~e~R~~Il~~~l~~~~--v~~~~la~l 334 (438)
.+ ++.+++.+|++.++.... ++.+.+..+
T Consensus 191 ~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L 223 (284)
T TIGR02880 191 DFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAF 223 (284)
T ss_pred EeCCcCHHHHHHHHHHHHHHhccccCHHHHHHH
Confidence 85 689999999998887643 444444333
No 48
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.70 E-value=3e-16 Score=175.10 Aligned_cols=163 Identities=20% Similarity=0.280 Sum_probs=119.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccc---------cCCCCChHHHHHHHHHHHHHHHHhCCceeEEecc
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE---------SGNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 230 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~---------s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDE 230 (438)
.++||+||||||||++|++||+.++.+++.++.+.+. ..|.|.....+.+.|..+. ...| ||||||
T Consensus 348 ~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~----~~~~-villDE 422 (775)
T TIGR00763 348 PILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAK----TKNP-LFLLDE 422 (775)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhC----cCCC-EEEEec
Confidence 4799999999999999999999999999999876542 3577877777777787663 4444 899999
Q ss_pred ccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCcccc--CCCCCceEEEecCCCCCCCccccCCCcceEEEec-
Q 013704 231 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ--EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA- 307 (438)
Q Consensus 231 iD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~--~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~l- 307 (438)
||++.+...+ ...+.|++++|++.+-.+-..|.. ...+++++|+|||.++.|+++|++ ||+ .+.+
T Consensus 423 idk~~~~~~~---------~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~ 490 (775)
T TIGR00763 423 IDKIGSSFRG---------DPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELS 490 (775)
T ss_pred hhhcCCccCC---------CHHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecC
Confidence 9999864321 123678888875333222212111 223689999999999999999999 996 4554
Q ss_pred -CCHHHHHHHHHhhhC----------C--CCCCHHHHHHHHccCC
Q 013704 308 -PTREDRIGVCSGIFR----------T--DNVPKEDIVKLVDTFP 339 (438)
Q Consensus 308 -P~~e~R~~Il~~~l~----------~--~~v~~~~la~l~~~~s 339 (438)
|+.+++.+|++.++. . ..++.+.+..+++.|.
T Consensus 491 ~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~ 535 (775)
T TIGR00763 491 GYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYT 535 (775)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcC
Confidence 789999999987652 1 2355667777777765
No 49
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=5.4e-16 Score=164.80 Aligned_cols=186 Identities=17% Similarity=0.192 Sum_probs=143.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC----CceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg----~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (438)
-.+..|||+||+|||||.|+++++++.. +++..++|+.+...-.....+.++.+|.++. +++|+||++|++|
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~----~~~PSiIvLDdld 504 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEAL----WYAPSIIVLDDLD 504 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHH----hhCCcEEEEcchh
Confidence 4467899999999999999999999954 5677899998874443334445556666665 9999999999999
Q ss_pred ccccC-CCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEec--CC
Q 013704 233 AGAGR-MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 309 (438)
Q Consensus 233 ~l~~~-r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~l--P~ 309 (438)
.+++. ...++|..+..+++..+|.++++ + |. ..+..+.+|+|.+....|++-|..+++|+..+.+ |+
T Consensus 505 ~l~~~s~~e~~q~~~~~~rla~flnqvi~-----~----y~-~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~ 574 (952)
T KOG0735|consen 505 CLASASSNENGQDGVVSERLAAFLNQVIK-----I----YL-KRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPA 574 (952)
T ss_pred hhhccCcccCCcchHHHHHHHHHHHHHHH-----H----HH-ccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcc
Confidence 99983 33456777777888888877666 1 22 4456689999999999999999999999998885 89
Q ss_pred HHHHHHHHHhhhCCCCC-----CHHHHHHHHccCCcchhHHHHHHHHhhhhHHHH
Q 013704 310 REDRIGVCSGIFRTDNV-----PKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 359 (438)
Q Consensus 310 ~e~R~~Il~~~l~~~~v-----~~~~la~l~~~~sgadi~~~~al~~~~~~~air 359 (438)
..+|.+||+.++.+... +++-++..++||...|+. .+..|+..++.+
T Consensus 575 ~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~---ifVeRai~~a~l 626 (952)
T KOG0735|consen 575 VTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLV---IFVERAIHEAFL 626 (952)
T ss_pred hhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHH---HHHHHHHHHHHH
Confidence 99999999988876331 234488899999999998 334454444443
No 50
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.66 E-value=1.1e-15 Score=168.98 Aligned_cols=171 Identities=17% Similarity=0.227 Sum_probs=122.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEEeccccc--cCCCCChHHHHHHHHHHHHHHHHhCCcee
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCC 225 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l----------g~~~i~vs~~~l~--s~~~Ge~~~~ir~~f~~A~~~~~~~~p~I 225 (438)
.+..+||+||||||||++|+++|... +..++.++.+.+. .+|.|+.+..++.+|+.+. ...++|
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~----~~~~~I 281 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLE----QDTNSI 281 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHH----hcCCCE
Confidence 34667999999999999999999873 4555666655555 4678999999999998776 778999
Q ss_pred EEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC-----CCCccccCCCc
Q 013704 226 LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGR 300 (438)
Q Consensus 226 LfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~-----~Ld~aLlR~GR 300 (438)
|||||+|.+++.+... . ....+.++|..++. ..++.+|++||..+ .+|++|.| |
T Consensus 282 LfIDEIh~L~g~g~~~-~---g~~d~~nlLkp~L~---------------~g~i~vIgATt~~E~~~~~~~D~AL~r--R 340 (758)
T PRK11034 282 LFIDEIHTIIGAGAAS-G---GQVDAANLIKPLLS---------------SGKIRVIGSTTYQEFSNIFEKDRALAR--R 340 (758)
T ss_pred EEeccHHHHhccCCCC-C---cHHHHHHHHHHHHh---------------CCCeEEEecCChHHHHHHhhccHHHHh--h
Confidence 9999999998764311 1 11233444544443 57799999998764 57999999 9
Q ss_pred ceEEEe-cCCHHHHHHHHHhhhC----CCCCC--HHHH---HHHHcc------CCcchhHHHHHHHHhh
Q 013704 301 MEKFYW-APTREDRIGVCSGIFR----TDNVP--KEDI---VKLVDT------FPGQSIDFFGALRARV 353 (438)
Q Consensus 301 fd~~i~-lP~~e~R~~Il~~~l~----~~~v~--~~~l---a~l~~~------~sgadi~~~~al~~~~ 353 (438)
|+.+.. .|+.+++..|++.+.. ..++. .+.+ ..++.+ +|+..|+++...|+++
T Consensus 341 Fq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlldea~a~~ 409 (758)
T PRK11034 341 FQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARA 409 (758)
T ss_pred CcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHHHHHhh
Confidence 975333 5999999999996543 23444 3433 334444 4567788777666654
No 51
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.63 E-value=4.5e-15 Score=141.24 Aligned_cols=191 Identities=15% Similarity=0.163 Sum_probs=110.0
Q ss_pred hhhhccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEecccccc
Q 013704 118 QGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 197 (438)
Q Consensus 118 ~~~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s 197 (438)
..+|.-+|++++|-.++-... ++....++. ......++|||||||+|||+||+.||++++.++...+++.+..
T Consensus 16 ~~lRP~~L~efiGQ~~l~~~l--~i~i~aa~~-----r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k 88 (233)
T PF05496_consen 16 ERLRPKSLDEFIGQEHLKGNL--KILIRAAKK-----RGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK 88 (233)
T ss_dssp HHTS-SSCCCS-S-HHHHHHH--HHHHHHHHC-----TTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S
T ss_pred HhcCCCCHHHccCcHHHHhhh--HHHHHHHHh-----cCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh
Confidence 455555667777753332211 111122221 1234568999999999999999999999999999988865431
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCc-cccCCcc----c
Q 013704 198 GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTN-VQLPGMY----N 272 (438)
Q Consensus 198 ~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~-v~ldg~~----~ 272 (438)
..-+..++.. -....|||||||+.+-. .+...|+..+++-.- +-++... .
T Consensus 89 ------~~dl~~il~~------l~~~~ILFIDEIHRlnk-------------~~qe~LlpamEd~~idiiiG~g~~ar~~ 143 (233)
T PF05496_consen 89 ------AGDLAAILTN------LKEGDILFIDEIHRLNK-------------AQQEILLPAMEDGKIDIIIGKGPNARSI 143 (233)
T ss_dssp ------CHHHHHHHHT--------TT-EEEECTCCC--H-------------HHHHHHHHHHHCSEEEEEBSSSSS-BEE
T ss_pred ------HHHHHHHHHh------cCCCcEEEEechhhccH-------------HHHHHHHHHhccCeEEEEecccccccee
Confidence 1223333332 24578999999998843 344566665553322 1111110 0
Q ss_pred cCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCHHHHHHHHHhhhCCC--CCCHHHHHHHHccCCcch
Q 013704 273 QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTD--NVPKEDIVKLVDTFPGQS 342 (438)
Q Consensus 273 ~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e~R~~Il~~~l~~~--~v~~~~la~l~~~~sgad 342 (438)
.-..++..+|+||++...|.+||+. ||..... ..+.++-.+|++...... +++.+...+++.+.-|.+
T Consensus 144 ~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtP 215 (233)
T PF05496_consen 144 RINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTP 215 (233)
T ss_dssp EEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSH
T ss_pred eccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCCh
Confidence 1123567899999999999999999 8888765 589999999998655544 455556666777666655
No 52
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=1.2e-14 Score=156.01 Aligned_cols=178 Identities=16% Similarity=0.166 Sum_probs=143.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccc
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 235 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~ 235 (438)
.+....+||+|+||||||++++++|.++|++++.++|.++.+...+.++..+...|.+|+ .+.|+||||-++|.+.
T Consensus 428 ~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~----~~~pavifl~~~dvl~ 503 (953)
T KOG0736|consen 428 LTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRAR----RCSPAVLFLRNLDVLG 503 (953)
T ss_pred cccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHh----hcCceEEEEeccceee
Confidence 455678999999999999999999999999999999999999999999999999999998 9999999999999998
Q ss_pred cCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEecCCHHHHHH
Q 013704 236 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIG 315 (438)
Q Consensus 236 ~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~lP~~e~R~~ 315 (438)
...++ ....++.+.+..++. .+-+ .....+++||+||+..+.|++.+++..+|+..+..|+.++|.+
T Consensus 504 id~dg-----ged~rl~~~i~~~ls------~e~~--~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~ 570 (953)
T KOG0736|consen 504 IDQDG-----GEDARLLKVIRHLLS------NEDF--KFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLE 570 (953)
T ss_pred ecCCC-----chhHHHHHHHHHHHh------cccc--cCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHH
Confidence 55432 233344444433322 1111 1356889999999999999999999777766666899999999
Q ss_pred HHHhhhCCCCCC----HHHHHHHHccCCcchhHHHHHHHHhh
Q 013704 316 VCSGIFRTDNVP----KEDIVKLVDTFPGQSIDFFGALRARV 353 (438)
Q Consensus 316 Il~~~l~~~~v~----~~~la~l~~~~sgadi~~~~al~~~~ 353 (438)
|++.+.....++ ...++..+.+|+-.++. ++..+.
T Consensus 571 iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~---~l~~~~ 609 (953)
T KOG0736|consen 571 ILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLE---ALVAHS 609 (953)
T ss_pred HHHHHHhccccchHHHHHHHHHhcCCCCHHHHH---HHhcCc
Confidence 999988775554 45678888888888877 555555
No 53
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3.1e-14 Score=151.34 Aligned_cols=186 Identities=22% Similarity=0.256 Sum_probs=154.1
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~ 233 (438)
.+..+|.+++++||||||||.+++++|.+ +..+..++++...+++.|+.+..++..|..+. ...|+++++||+|.
T Consensus 13 ~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~~ii~~d~~~~ 87 (494)
T COG0464 13 LGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAE----KLAPSIIFIDEIDA 87 (494)
T ss_pred hCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHH----HhCCCeEeechhhh
Confidence 36788999999999999999999999999 77778889999999999999999999999998 88899999999999
Q ss_pred cccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCHH
Q 013704 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 311 (438)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e 311 (438)
+.+.+.. ....+. +.+...++.+.+ +. .... +.+++.||++..++++++++|||++.+. .|+..
T Consensus 88 ~~~~~~~-~~~~~~-~~v~~~l~~~~d--------~~---~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (494)
T COG0464 88 LAPKRSS-DQGEVE-RRVVAQLLALMD--------GL---KRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEA 153 (494)
T ss_pred cccCccc-cccchh-hHHHHHHHHhcc--------cc---cCCc-eEEEeecCCccccChhHhCccccceeeecCCCCHH
Confidence 9998764 333333 444455555343 33 2345 8888899999999999999999999999 59999
Q ss_pred HHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHH
Q 013704 312 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 361 (438)
Q Consensus 312 ~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~ 361 (438)
.|.+|+...... ...+.+.++..+.+|.++++. .++..+...++++.
T Consensus 154 ~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~l~~~~~~~~~~r~ 204 (494)
T COG0464 154 GRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLG---ALAKEAALRELRRA 204 (494)
T ss_pred HHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHH---HHHHHHHHHHHHhh
Confidence 998888754433 456788999999999999999 77877777777665
No 54
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.58 E-value=8.1e-14 Score=156.58 Aligned_cols=173 Identities=18% Similarity=0.214 Sum_probs=127.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEEeccccc--cCCCCChHHHHHHHHHHHHHHHHhCCce
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMC 224 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l----------g~~~i~vs~~~l~--s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ 224 (438)
+.+.+++|+||||||||++|+.+|..+ +.+++.++.+.+. .+|.|+.+..++.+++++. ...++
T Consensus 198 ~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~----~~~~~ 273 (821)
T CHL00095 198 RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQ----ENNNI 273 (821)
T ss_pred cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHH----hcCCe
Confidence 456689999999999999999999985 4778889988776 5789999999999999886 67899
Q ss_pred eEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC-----CCCccccCCC
Q 013704 225 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDG 299 (438)
Q Consensus 225 ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~-----~Ld~aLlR~G 299 (438)
||||||+|.+.+.... .... .+...|...+. ...+.+|++|+..+ ..|++|.|
T Consensus 274 ILfiDEih~l~~~g~~--~g~~---~~a~lLkp~l~---------------rg~l~~IgaTt~~ey~~~ie~D~aL~r-- 331 (821)
T CHL00095 274 ILVIDEVHTLIGAGAA--EGAI---DAANILKPALA---------------RGELQCIGATTLDEYRKHIEKDPALER-- 331 (821)
T ss_pred EEEEecHHHHhcCCCC--CCcc---cHHHHhHHHHh---------------CCCcEEEEeCCHHHHHHHHhcCHHHHh--
Confidence 9999999999876431 1111 22333433222 56789999888653 57999999
Q ss_pred cceEEEe-cCCHHHHHHHHHhhhC------CCCCCHHH---HHHHHccC------CcchhHHHHHHHHhhhh
Q 013704 300 RMEKFYW-APTREDRIGVCSGIFR------TDNVPKED---IVKLVDTF------PGQSIDFFGALRARVYD 355 (438)
Q Consensus 300 Rfd~~i~-lP~~e~R~~Il~~~l~------~~~v~~~~---la~l~~~~------sgadi~~~~al~~~~~~ 355 (438)
||..+.. .|+.++..+|++.+.. ...++.+. ++.++.+| |+..|+++...++++..
T Consensus 332 Rf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a~~~~ 403 (821)
T CHL00095 332 RFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGSRVRL 403 (821)
T ss_pred cceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHHHHHh
Confidence 9976544 5999999999875432 22355553 55666664 66788888777776543
No 55
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.58 E-value=6e-14 Score=156.21 Aligned_cols=164 Identities=20% Similarity=0.291 Sum_probs=121.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEecccccc---------CCCCChHHHHHHHHHHHHHHHHhCCceeEEec
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------GNAGEPAKLIRQRYREAADIIKKGKMCCLFIN 229 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s---------~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfID 229 (438)
...++|+||||||||++++.+|+.++.+++.++.+...+ .|.|.....+.+.+..+ .....|||||
T Consensus 349 g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~-----~~~~~villD 423 (784)
T PRK10787 349 GPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKV-----GVKNPLFLLD 423 (784)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhc-----CCCCCEEEEE
Confidence 347999999999999999999999999999988765432 35666555555556544 3345589999
Q ss_pred cccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCcccc--CCCCCceEEEecCCCCCCCccccCCCcceEEEe-
Q 013704 230 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ--EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW- 306 (438)
Q Consensus 230 EiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~--~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~- 306 (438)
|+|++.....+ .....|++++|+.++..+...|.. .+.+++.+|+|+|.. .|++||+. ||+.+.+
T Consensus 424 Eidk~~~~~~g---------~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~ii~~~ 491 (784)
T PRK10787 424 EIDKMSSDMRG---------DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLD--RMEVIRLS 491 (784)
T ss_pred ChhhcccccCC---------CHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhc--ceeeeecC
Confidence 99999765322 134789999997777776665553 355899999999998 59999999 9975444
Q ss_pred cCCHHHHHHHHHhhhCC------------CCCCHHHHHHHHccCC
Q 013704 307 APTREDRIGVCSGIFRT------------DNVPKEDIVKLVDTFP 339 (438)
Q Consensus 307 lP~~e~R~~Il~~~l~~------------~~v~~~~la~l~~~~s 339 (438)
-++.++..+|.+.++.. ..++.+.+..++++|+
T Consensus 492 ~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt 536 (784)
T PRK10787 492 GYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYT 536 (784)
T ss_pred CCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCC
Confidence 37899999999877641 1344556666776664
No 56
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.58 E-value=6.1e-14 Score=142.06 Aligned_cols=125 Identities=21% Similarity=0.205 Sum_probs=97.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccC
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 237 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~ 237 (438)
....++||||||||||++|+.||...+..|..+++..- .-+-+|+++++|+.....++..|||||||+.+-..
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~-------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~ 119 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS-------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA 119 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc-------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh
Confidence 34679999999999999999999999999999997632 25789999999976665677899999999987543
Q ss_pred CCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEec--CCCCCCCccccCCCcceEEEec-CCHHHHH
Q 013704 238 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWA-PTREDRI 314 (438)
Q Consensus 238 r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TT--N~~~~Ld~aLlR~GRfd~~i~l-P~~e~R~ 314 (438)
| +..|+-.++ ...+.+|+|| |..-.|.+||++ |.-.+..- -+.++..
T Consensus 120 -----Q--------QD~lLp~vE---------------~G~iilIGATTENPsF~ln~ALlS--R~~vf~lk~L~~~di~ 169 (436)
T COG2256 120 -----Q--------QDALLPHVE---------------NGTIILIGATTENPSFELNPALLS--RARVFELKPLSSEDIK 169 (436)
T ss_pred -----h--------hhhhhhhhc---------------CCeEEEEeccCCCCCeeecHHHhh--hhheeeeecCCHHHHH
Confidence 2 244555443 5678888844 677789999999 77554443 5788888
Q ss_pred HHHHh
Q 013704 315 GVCSG 319 (438)
Q Consensus 315 ~Il~~ 319 (438)
++++.
T Consensus 170 ~~l~r 174 (436)
T COG2256 170 KLLKR 174 (436)
T ss_pred HHHHH
Confidence 88876
No 57
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.58 E-value=2.1e-14 Score=161.37 Aligned_cols=172 Identities=19% Similarity=0.211 Sum_probs=124.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEEeccccc--cCCCCChHHHHHHHHHHHHHHHHhCCceeE
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCCL 226 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l----------g~~~i~vs~~~l~--s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL 226 (438)
..+++|+||||||||++++.+|..+ +..++.++.+.+. .+|.|+.+..++.+++++. +...++||
T Consensus 208 ~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~---~~~~~~IL 284 (852)
T TIGR03345 208 QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVK---ASPQPIIL 284 (852)
T ss_pred cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHH---hcCCCeEE
Confidence 4578999999999999999999985 2457777777765 3689999999999999875 13578999
Q ss_pred EeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCC-----CCCCCccccCCCcc
Q 013704 227 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND-----FSTLYAPLIRDGRM 301 (438)
Q Consensus 227 fIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~-----~~~Ld~aLlR~GRf 301 (438)
||||++.+.+.++...+ +.+.+.|...+. .+.+.+|+||+. .-.+|+||+| ||
T Consensus 285 fIDEih~l~~~g~~~~~-----~d~~n~Lkp~l~---------------~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf 342 (852)
T TIGR03345 285 FIDEAHTLIGAGGQAGQ-----GDAANLLKPALA---------------RGELRTIAATTWAEYKKYFEKDPALTR--RF 342 (852)
T ss_pred EEeChHHhccCCCcccc-----ccHHHHhhHHhh---------------CCCeEEEEecCHHHHhhhhhccHHHHH--hC
Confidence 99999999876432112 112233433222 577899998875 3458999999 99
Q ss_pred eEEEe-cCCHHHHHHHHHhhhCC----CC--CCHHH---HHHHHccC------CcchhHHHHHHHHhhhh
Q 013704 302 EKFYW-APTREDRIGVCSGIFRT----DN--VPKED---IVKLVDTF------PGQSIDFFGALRARVYD 355 (438)
Q Consensus 302 d~~i~-lP~~e~R~~Il~~~l~~----~~--v~~~~---la~l~~~~------sgadi~~~~al~~~~~~ 355 (438)
..+.. .|+.+++..||+.+... .+ ++.+. ++.++++| |+..|+++...|+++..
T Consensus 343 ~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~ 412 (852)
T TIGR03345 343 QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVAL 412 (852)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHHHHHHHHH
Confidence 65433 59999999998755432 23 34443 55666654 78889988877776553
No 58
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.55 E-value=2.7e-14 Score=160.86 Aligned_cols=173 Identities=20% Similarity=0.219 Sum_probs=124.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEEeccccc--cCCCCChHHHHHHHHHHHHHHHHhCCcee
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCC 225 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l----------g~~~i~vs~~~l~--s~~~Ge~~~~ir~~f~~A~~~~~~~~p~I 225 (438)
...+++|+||||||||++++.+|..+ +.+++.++.+.+. .+|.|+.++.++.+|+++. +...++|
T Consensus 193 ~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~---~~~~~~I 269 (852)
T TIGR03346 193 TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVT---KSEGQII 269 (852)
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHH---hcCCCeE
Confidence 34678899999999999999999985 6778888877765 5688999999999999774 1346999
Q ss_pred EEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCC-----CCCCccccCCCc
Q 013704 226 LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-----STLYAPLIRDGR 300 (438)
Q Consensus 226 LfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~-----~~Ld~aLlR~GR 300 (438)
|||||++.+.+.... +.. ....+.|...+ ....+.+|++|+.. -.+|+++.| |
T Consensus 270 LfIDEih~l~~~g~~--~~~---~d~~~~Lk~~l---------------~~g~i~~IgaTt~~e~r~~~~~d~al~r--R 327 (852)
T TIGR03346 270 LFIDELHTLVGAGKA--EGA---MDAGNMLKPAL---------------ARGELHCIGATTLDEYRKYIEKDAALER--R 327 (852)
T ss_pred EEeccHHHhhcCCCC--cch---hHHHHHhchhh---------------hcCceEEEEeCcHHHHHHHhhcCHHHHh--c
Confidence 999999999864321 111 11223333222 25778999988766 358999999 9
Q ss_pred ceEEEe-cCCHHHHHHHHHhhhCC----CC--CCHHH---HHHHHccC------CcchhHHHHHHHHhhhh
Q 013704 301 MEKFYW-APTREDRIGVCSGIFRT----DN--VPKED---IVKLVDTF------PGQSIDFFGALRARVYD 355 (438)
Q Consensus 301 fd~~i~-lP~~e~R~~Il~~~l~~----~~--v~~~~---la~l~~~~------sgadi~~~~al~~~~~~ 355 (438)
|..++. .|+.+++..|++.+... .+ +..+. .+.++.+| |+..|+++...|+++..
T Consensus 328 f~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~ 398 (852)
T TIGR03346 328 FQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAARIRM 398 (852)
T ss_pred CCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHHHHHh
Confidence 986544 59999999999866432 23 33333 45566554 67888888877776543
No 59
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.54 E-value=4.7e-14 Score=158.81 Aligned_cols=169 Identities=20% Similarity=0.249 Sum_probs=120.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEEeccccc--cCCCCChHHHHHHHHHHHHHHHHhCCceeE
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCCL 226 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l----------g~~~i~vs~~~l~--s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL 226 (438)
..+++|+||||||||++|+.+|..+ +.+++.++.+.+. .+|.|+.++.++.+|++.. +...++||
T Consensus 199 ~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~---~~~~~~IL 275 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLA---KQEGNVIL 275 (857)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHH---HcCCCeEE
Confidence 4578899999999999999999997 7788888888766 5688999999999998753 14678999
Q ss_pred EeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC-----CCCccccCCCcc
Q 013704 227 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGRM 301 (438)
Q Consensus 227 fIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~-----~Ld~aLlR~GRf 301 (438)
||||++.+.+...+ ..... ....|...+ ..+.+.+|+||+..+ .+|+||.| ||
T Consensus 276 fIDEih~l~~~~~~--~~~~d---~~~~lkp~l---------------~~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf 333 (857)
T PRK10865 276 FIDELHTMVGAGKA--DGAMD---AGNMLKPAL---------------ARGELHCVGATTLDEYRQYIEKDAALER--RF 333 (857)
T ss_pred EEecHHHhccCCCC--ccchh---HHHHhcchh---------------hcCCCeEEEcCCCHHHHHHhhhcHHHHh--hC
Confidence 99999999876432 11111 222232211 257889999888765 58999999 99
Q ss_pred eEEEe-cCCHHHHHHHHHhhhCC----CCC--CHHH---HHHHHcc------CCcchhHHHHHHHHh
Q 013704 302 EKFYW-APTREDRIGVCSGIFRT----DNV--PKED---IVKLVDT------FPGQSIDFFGALRAR 352 (438)
Q Consensus 302 d~~i~-lP~~e~R~~Il~~~l~~----~~v--~~~~---la~l~~~------~sgadi~~~~al~~~ 352 (438)
+.++. .|+.+++..|++.+... .++ ..+. .+.++.+ ||+..++++...++.
T Consensus 334 ~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~ 400 (857)
T PRK10865 334 QKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASS 400 (857)
T ss_pred CEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhcc
Confidence 76555 69999999999876543 223 3333 3345544 455555555444433
No 60
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.51 E-value=2.3e-13 Score=137.53 Aligned_cols=159 Identities=16% Similarity=0.159 Sum_probs=104.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~ 236 (438)
.++.++|||||||||||++|+++|++++..+..++++.+.. ...+..++.. ...++||||||+|.+..
T Consensus 49 ~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~------~~~l~~~l~~------l~~~~vl~IDEi~~l~~ 116 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK------PGDLAAILTN------LEEGDVLFIDEIHRLSP 116 (328)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC------hHHHHHHHHh------cccCCEEEEecHhhcch
Confidence 45678999999999999999999999999887776654321 2223333332 34688999999998853
Q ss_pred CCCCCccccchhHHHHHHHHHhhcCCC-ccccCCccc----cCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCC
Q 013704 237 RMGGTTQYTVNNQMVNATLMNIADNPT-NVQLPGMYN----QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 309 (438)
Q Consensus 237 ~r~~~~~~~~~~~~v~~~Ll~Lld~~~-~v~ldg~~~----~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~ 309 (438)
.. ...|..++++.. .+.++.... ....+++.+|++||++..++++|++ ||...+. .|+
T Consensus 117 ~~-------------~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~ 181 (328)
T PRK00080 117 VV-------------EEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYT 181 (328)
T ss_pred HH-------------HHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCC
Confidence 21 112233222110 111111100 0122457789999999999999998 8877666 489
Q ss_pred HHHHHHHHHhhhCCC--CCCHHHHHHHHccCCcch
Q 013704 310 REDRIGVCSGIFRTD--NVPKEDIVKLVDTFPGQS 342 (438)
Q Consensus 310 ~e~R~~Il~~~l~~~--~v~~~~la~l~~~~sgad 342 (438)
.+++.+|++...... .++.+.+..++..+.|..
T Consensus 182 ~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p 216 (328)
T PRK00080 182 VEELEKIVKRSARILGVEIDEEGALEIARRSRGTP 216 (328)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc
Confidence 999999999776654 445555666666655543
No 61
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.51 E-value=2.1e-13 Score=143.59 Aligned_cols=194 Identities=19% Similarity=0.229 Sum_probs=119.6
Q ss_pred hccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCceEEEecccc
Q 013704 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGEL 195 (438)
Q Consensus 121 r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~l-----g~~~i~vs~~~l 195 (438)
..|+|+|.+.+. ..+.....++.+...++ .....++||||||||||+|++++++++ +..++++++.++
T Consensus 117 ~~~tfd~fv~g~------~n~~a~~~~~~~~~~~~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~ 189 (450)
T PRK00149 117 PKYTFDNFVVGK------SNRLAHAAALAVAENPG-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF 189 (450)
T ss_pred CCCcccccccCC------CcHHHHHHHHHHHhCcC-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 456677765431 12345555666655554 234569999999999999999999996 567888888776
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCC
Q 013704 196 ESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275 (438)
Q Consensus 196 ~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~ 275 (438)
...+...........|... -..+.+|+|||++.+.++.. ++ +.+..++-.+.+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~-----~~~~dlLiiDDi~~l~~~~~--~~-----~~l~~~~n~l~~--------------- 242 (450)
T PRK00149 190 TNDFVNALRNNTMEEFKEK-----YRSVDVLLIDDIQFLAGKER--TQ-----EEFFHTFNALHE--------------- 242 (450)
T ss_pred HHHHHHHHHcCcHHHHHHH-----HhcCCEEEEehhhhhcCCHH--HH-----HHHHHHHHHHHH---------------
Confidence 5432211110001122211 23588999999999865421 11 222222222221
Q ss_pred CCCceEEEecCC-CCC---CCccccCCCcceE--EEe--cCCHHHHHHHHHhhhCC--CCCCHHHHHHHHccCCcchhHH
Q 013704 276 NPRVPIIVTGND-FST---LYAPLIRDGRMEK--FYW--APTREDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQSIDF 345 (438)
Q Consensus 276 ~~~v~VI~TTN~-~~~---Ld~aLlR~GRfd~--~i~--lP~~e~R~~Il~~~l~~--~~v~~~~la~l~~~~sgadi~~ 345 (438)
.+..+|+|+|. |.. +++.|++ ||.. .+. .|+.++|.+|++..... ..++.+.+..+++.+.+.--.+
T Consensus 243 -~~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 243 -AGKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred -CCCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHH
Confidence 12345556654 444 6788888 8853 444 59999999999987764 4567778888999987754444
Q ss_pred HHHHHH
Q 013704 346 FGALRA 351 (438)
Q Consensus 346 ~~al~~ 351 (438)
.++|..
T Consensus 320 ~~~l~~ 325 (450)
T PRK00149 320 EGALNR 325 (450)
T ss_pred HHHHHH
Confidence 444443
No 62
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.51 E-value=2.4e-13 Score=146.12 Aligned_cols=192 Identities=19% Similarity=0.193 Sum_probs=117.7
Q ss_pred hccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCceEEEecccc
Q 013704 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGEL 195 (438)
Q Consensus 121 r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~l-----g~~~i~vs~~~l 195 (438)
..|+|+|++.+.. .++....++.....++. ....|+|||++|||||+|+.+||+++ +..++++++.++
T Consensus 283 ~~~TFDnFvvG~s------N~~A~aaa~avae~~~~-~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef 355 (617)
T PRK14086 283 PKYTFDTFVIGAS------NRFAHAAAVAVAEAPAK-AYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEF 355 (617)
T ss_pred CCCCHhhhcCCCc------cHHHHHHHHHHHhCccc-cCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 3466777664421 12233334444333331 22349999999999999999999985 568889998877
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCC
Q 013704 196 ESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE 275 (438)
Q Consensus 196 ~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~ 275 (438)
...+...........|++. -..+++|+||||+.+.++.. ++ ..|.++++ . ..
T Consensus 356 ~~el~~al~~~~~~~f~~~-----y~~~DLLlIDDIq~l~gke~--tq---------eeLF~l~N----------~--l~ 407 (617)
T PRK14086 356 TNEFINSIRDGKGDSFRRR-----YREMDILLVDDIQFLEDKES--TQ---------EEFFHTFN----------T--LH 407 (617)
T ss_pred HHHHHHHHHhccHHHHHHH-----hhcCCEEEEehhccccCCHH--HH---------HHHHHHHH----------H--HH
Confidence 6443221111111123321 23578999999999875532 11 22333333 0 11
Q ss_pred CCCceEEEecCCC----CCCCccccCCCcceE--EEec--CCHHHHHHHHHhhhCCC--CCCHHHHHHHHccCCcchhHH
Q 013704 276 NPRVPIIVTGNDF----STLYAPLIRDGRMEK--FYWA--PTREDRIGVCSGIFRTD--NVPKEDIVKLVDTFPGQSIDF 345 (438)
Q Consensus 276 ~~~v~VI~TTN~~----~~Ld~aLlR~GRfd~--~i~l--P~~e~R~~Il~~~l~~~--~v~~~~la~l~~~~sgadi~~ 345 (438)
..+..||+|+|.+ ..+++.|++ ||.. .+.+ |+.+.|.+||+..+... .++.+.+..++.+++..--++
T Consensus 408 e~gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 408 NANKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIREL 485 (617)
T ss_pred hcCCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHH
Confidence 2345677788765 357888999 7754 4444 99999999999877764 455667888888887643334
Q ss_pred HHHH
Q 013704 346 FGAL 349 (438)
Q Consensus 346 ~~al 349 (438)
.++|
T Consensus 486 egaL 489 (617)
T PRK14086 486 EGAL 489 (617)
T ss_pred HHHH
Confidence 4333
No 63
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.50 E-value=4e-13 Score=138.48 Aligned_cols=156 Identities=19% Similarity=0.216 Sum_probs=120.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccc-cCCCC-ChHHHHHHHHHHHHHHH----------------
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAG-EPAKLIRQRYREAADII---------------- 218 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~-s~~~G-e~~~~ir~~f~~A~~~~---------------- 218 (438)
-.|.+|||+||||||||++|+++|+.++.+|+.+++..+. .+|+| +.+..++.+|..|...+
T Consensus 45 ~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~a 124 (441)
T TIGR00390 45 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELA 124 (441)
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3579999999999999999999999999999999998876 58999 67888998888871100
Q ss_pred --------------------------------------------------------------------------------
Q 013704 219 -------------------------------------------------------------------------------- 218 (438)
Q Consensus 219 -------------------------------------------------------------------------------- 218 (438)
T Consensus 125 e~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (441)
T TIGR00390 125 EERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNL 204 (441)
T ss_pred HHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhh
Confidence
Q ss_pred --------------------------------------H-hCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhh
Q 013704 219 --------------------------------------K-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 259 (438)
Q Consensus 219 --------------------------------------~-~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Ll 259 (438)
+ ..+..||||||||+++.+.. ....++....|++.|+.|+
T Consensus 205 ~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfiDEiDKIa~~~~-~~~~DvS~eGVQ~~LLkil 283 (441)
T TIGR00390 205 GGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFIDEIDKIAKKGE-SSGADVSREGVQRDLLPIV 283 (441)
T ss_pred cCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEchhhhcccCC-CCCCCCCccchhccccccc
Confidence 0 12456999999999997653 2345667778999999988
Q ss_pred cCCCccccCCccccCCCCCceEEEec----CCCCCCCccccCCCcceEEEec--CCHHHHHHHHH
Q 013704 260 DNPTNVQLPGMYNQEENPRVPIIVTG----NDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS 318 (438)
Q Consensus 260 d~~~~v~ldg~~~~~~~~~v~VI~TT----N~~~~Ld~aLlR~GRfd~~i~l--P~~e~R~~Il~ 318 (438)
+ .+.|+.. +......++.+||++ ..|+.|-|.|.- ||.....+ ++.++-..||.
T Consensus 284 E-Gt~v~~k--~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~~L~~edL~rILt 343 (441)
T TIGR00390 284 E-GSTVNTK--YGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIRVELQALTTDDFERILT 343 (441)
T ss_pred c-Cceeeec--ceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECCCCCHHHHHHHhc
Confidence 7 3444432 234567899999976 356667777765 99999996 78998888873
No 64
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.49 E-value=4.3e-13 Score=140.93 Aligned_cols=196 Identities=15% Similarity=0.140 Sum_probs=118.5
Q ss_pred hccccccccCCCCCChhhHHHHHHHHHHhhhcCCC---CCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccc
Q 013704 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPN---VKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE 194 (438)
Q Consensus 121 r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~---~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~ 194 (438)
..|+|+|.+.+. . .+.....++.+...++ ......++||||||+|||+|++++++++ +..++++++..
T Consensus 106 ~~~tFdnFv~g~--~----N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~ 179 (445)
T PRK12422 106 PLMTFANFLVTP--E----NDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSEL 179 (445)
T ss_pred ccccccceeeCC--c----HHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHH
Confidence 346677766441 1 2333344444433221 1233679999999999999999999985 67888888766
Q ss_pred cccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccC
Q 013704 195 LESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 274 (438)
Q Consensus 195 l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~ 274 (438)
+...+...-...-...|+.. ...+++|+|||++.+.++.. ++ +.+..++-.+.+
T Consensus 180 f~~~~~~~l~~~~~~~f~~~-----~~~~dvLiIDDiq~l~~k~~--~q-----eelf~l~N~l~~-------------- 233 (445)
T PRK12422 180 FTEHLVSAIRSGEMQRFRQF-----YRNVDALFIEDIEVFSGKGA--TQ-----EEFFHTFNSLHT-------------- 233 (445)
T ss_pred HHHHHHHHHhcchHHHHHHH-----cccCCEEEEcchhhhcCChh--hH-----HHHHHHHHHHHH--------------
Confidence 54321110000000122221 34678999999998865422 11 122222211111
Q ss_pred CCCCceEEEecCCC----CCCCccccCCCcce--EEEec--CCHHHHHHHHHhhhCCC--CCCHHHHHHHHccCCcchhH
Q 013704 275 ENPRVPIIVTGNDF----STLYAPLIRDGRME--KFYWA--PTREDRIGVCSGIFRTD--NVPKEDIVKLVDTFPGQSID 344 (438)
Q Consensus 275 ~~~~v~VI~TTN~~----~~Ld~aLlR~GRfd--~~i~l--P~~e~R~~Il~~~l~~~--~v~~~~la~l~~~~sgadi~ 344 (438)
.+.++|+|||.+ ..+++.|++ ||. ..+.+ |+.++|.+|++...... .++.+.+..++..+++---+
T Consensus 234 --~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~ 309 (445)
T PRK12422 234 --EGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKS 309 (445)
T ss_pred --CCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHH
Confidence 234677777663 356788998 885 45554 99999999999777654 46666778888888865445
Q ss_pred HHHHHHHh
Q 013704 345 FFGALRAR 352 (438)
Q Consensus 345 ~~~al~~~ 352 (438)
+.+++...
T Consensus 310 L~g~l~~l 317 (445)
T PRK12422 310 LLHALTLL 317 (445)
T ss_pred HHHHHHHH
Confidence 55555554
No 65
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.48 E-value=4.7e-13 Score=137.99 Aligned_cols=155 Identities=21% Similarity=0.257 Sum_probs=120.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEecccccc-CCCC-ChHHHHHHHHHHHHHH------------------
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-GNAG-EPAKLIRQRYREAADI------------------ 217 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s-~~~G-e~~~~ir~~f~~A~~~------------------ 217 (438)
.|.++||+||||||||++|+++|+.++.+|+.++++.+.. +|+| +.+..++.+|..|..+
T Consensus 49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e 128 (443)
T PRK05201 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAE 128 (443)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999998774 7999 6678899998888200
Q ss_pred --------------------------------------------------------------------------------
Q 013704 218 -------------------------------------------------------------------------------- 217 (438)
Q Consensus 218 -------------------------------------------------------------------------------- 217 (438)
T Consensus 129 ~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (443)
T PRK05201 129 ERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGP 208 (443)
T ss_pred HHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCC
Confidence
Q ss_pred -----------------------------------HH-hCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcC
Q 013704 218 -----------------------------------IK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADN 261 (438)
Q Consensus 218 -----------------------------------~~-~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~ 261 (438)
++ .....||||||||+++.+.++ +..++....|++.|+.|++
T Consensus 209 ~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiDEiDKIa~~~~~-~~~DvS~eGVQ~~LLki~E- 286 (443)
T PRK05201 209 KKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFIDEIDKIAARGGS-SGPDVSREGVQRDLLPLVE- 286 (443)
T ss_pred CCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEcchhhcccCCC-CCCCCCccchhcccccccc-
Confidence 00 124569999999999977543 3446777889999999877
Q ss_pred CCccccCCccccCCCCCceEEEec----CCCCCCCccccCCCcceEEEec--CCHHHHHHHHH
Q 013704 262 PTNVQLPGMYNQEENPRVPIIVTG----NDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS 318 (438)
Q Consensus 262 ~~~v~ldg~~~~~~~~~v~VI~TT----N~~~~Ld~aLlR~GRfd~~i~l--P~~e~R~~Il~ 318 (438)
-+.|+.. +......++.+||++ ..|+.|-|.|.- ||.....+ .+.++-..||.
T Consensus 287 G~~v~~k--~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~~L~~~dL~~ILt 345 (443)
T PRK05201 287 GSTVSTK--YGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVELDALTEEDFVRILT 345 (443)
T ss_pred cceeeec--ceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECCCCCHHHHHHHhc
Confidence 3333332 233566899999966 456777788876 99999996 78998888874
No 66
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.46 E-value=7.3e-13 Score=137.59 Aligned_cols=191 Identities=18% Similarity=0.227 Sum_probs=114.9
Q ss_pred ccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCceEEEeccccc
Q 013704 122 QYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELE 196 (438)
Q Consensus 122 ~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~l-----g~~~i~vs~~~l~ 196 (438)
.|+|++.+.+ + ........++.+...++ .....++||||||+|||+|++++++++ +..++++++.++.
T Consensus 106 ~~tfd~fi~g----~--~n~~a~~~~~~~~~~~~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~ 178 (405)
T TIGR00362 106 KYTFDNFVVG----K--SNRLAHAAALAVAENPG-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFT 178 (405)
T ss_pred CCcccccccC----C--cHHHHHHHHHHHHhCcC-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHH
Confidence 4567775433 1 12344555666655554 335679999999999999999999986 6788889887665
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCC
Q 013704 197 SGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 276 (438)
Q Consensus 197 s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~ 276 (438)
..+...........|... -..+.+|+|||+|.+.++.. + ...|..+++ . ...
T Consensus 179 ~~~~~~~~~~~~~~~~~~-----~~~~dlLiiDDi~~l~~~~~--~---------~~~l~~~~n----------~--~~~ 230 (405)
T TIGR00362 179 NDFVNALRNNKMEEFKEK-----YRSVDLLLIDDIQFLAGKER--T---------QEEFFHTFN----------A--LHE 230 (405)
T ss_pred HHHHHHHHcCCHHHHHHH-----HHhCCEEEEehhhhhcCCHH--H---------HHHHHHHHH----------H--HHH
Confidence 322111000000112111 12367999999998865421 1 122333333 0 001
Q ss_pred CCceEEEecCC-CCC---CCccccCCCcceE--EEe--cCCHHHHHHHHHhhhCC--CCCCHHHHHHHHccCCcchhHHH
Q 013704 277 PRVPIIVTGND-FST---LYAPLIRDGRMEK--FYW--APTREDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQSIDFF 346 (438)
Q Consensus 277 ~~v~VI~TTN~-~~~---Ld~aLlR~GRfd~--~i~--lP~~e~R~~Il~~~l~~--~~v~~~~la~l~~~~sgadi~~~ 346 (438)
.+.++|+|+|. |.. +++.|++ ||.. .+. .|+.++|.+|++..+.. ..++.+.+..+++.+.+.--++.
T Consensus 231 ~~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 231 NGKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred CCCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHH
Confidence 22345666654 443 5677888 8864 344 59999999999988765 44566778888888876443333
Q ss_pred HHH
Q 013704 347 GAL 349 (438)
Q Consensus 347 ~al 349 (438)
+++
T Consensus 309 ~~l 311 (405)
T TIGR00362 309 GAL 311 (405)
T ss_pred HHH
Confidence 333
No 67
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.46 E-value=1.2e-12 Score=127.48 Aligned_cols=156 Identities=16% Similarity=0.174 Sum_probs=107.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~ 236 (438)
...-++|||||||.|||+||..||+++|.++-..+++.+.. ..-+..++. .-...+|||||||+++.+
T Consensus 50 e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK------~gDlaaiLt------~Le~~DVLFIDEIHrl~~ 117 (332)
T COG2255 50 EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK------PGDLAAILT------NLEEGDVLFIDEIHRLSP 117 (332)
T ss_pred CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC------hhhHHHHHh------cCCcCCeEEEehhhhcCh
Confidence 44578999999999999999999999999998888876652 112222222 145678999999999865
Q ss_pred CCCCCccccchhHHHHHHHHHhhcCCCccccCCcc--------ccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--
Q 013704 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY--------NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-- 306 (438)
Q Consensus 237 ~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~--------~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~-- 306 (438)
. +...|.-.+++ .++|=+. ..-+.++..+|++|.+...|..+|+. ||.....
T Consensus 118 ~-------------vEE~LYpaMED---f~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rle 179 (332)
T COG2255 118 A-------------VEEVLYPAMED---FRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLE 179 (332)
T ss_pred h-------------HHHHhhhhhhh---eeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHH--hcCCeeeee
Confidence 3 22334333321 2222110 01234677799999999999999999 8887766
Q ss_pred cCCHHHHHHHHHhhhC--CCCCCHHHHHHHHccCCcch
Q 013704 307 APTREDRIGVCSGIFR--TDNVPKEDIVKLVDTFPGQS 342 (438)
Q Consensus 307 lP~~e~R~~Il~~~l~--~~~v~~~~la~l~~~~sgad 342 (438)
+.+.++..+|++..-. ..+++.+...+++.+.-|.+
T Consensus 180 fY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTP 217 (332)
T COG2255 180 FYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTP 217 (332)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCc
Confidence 6899999999985544 44566665555555554443
No 68
>PRK04195 replication factor C large subunit; Provisional
Probab=99.46 E-value=8.5e-13 Score=140.16 Aligned_cols=155 Identities=18% Similarity=0.225 Sum_probs=107.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHH-h-CCceeEEecccccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-K-GKMCCLFINDLDAG 234 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~-~-~~p~ILfIDEiD~l 234 (438)
.++..+|||||||||||++|+++|++++.+++.+++++..+ ...++.+...+..... . ..+.||||||+|.+
T Consensus 37 ~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L 110 (482)
T PRK04195 37 KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT------ADVIERVAGEAATSGSLFGARRKLILLDEVDGI 110 (482)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc------HHHHHHHHHHhhccCcccCCCCeEEEEecCccc
Confidence 34789999999999999999999999999999999876431 2345555444431111 1 26789999999998
Q ss_pred ccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCc-cccCCCcceEEEe-cCCHHH
Q 013704 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA-PLIRDGRMEKFYW-APTRED 312 (438)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~-aLlR~GRfd~~i~-lP~~e~ 312 (438)
..... +.....|+++++ ..+.++|++||++..+.+ .|++ |+..+.. .|+.++
T Consensus 111 ~~~~d---------~~~~~aL~~~l~---------------~~~~~iIli~n~~~~~~~k~Lrs--r~~~I~f~~~~~~~ 164 (482)
T PRK04195 111 HGNED---------RGGARAILELIK---------------KAKQPIILTANDPYDPSLRELRN--ACLMIEFKRLSTRS 164 (482)
T ss_pred ccccc---------hhHHHHHHHHHH---------------cCCCCEEEeccCccccchhhHhc--cceEEEecCCCHHH
Confidence 65311 112244555444 345789999999998887 6666 5544333 589999
Q ss_pred HHHHHHhhhCCCC--CCHHHHHHHHccCCcchhH
Q 013704 313 RIGVCSGIFRTDN--VPKEDIVKLVDTFPGQSID 344 (438)
Q Consensus 313 R~~Il~~~l~~~~--v~~~~la~l~~~~sgadi~ 344 (438)
...+++.++...+ ++.+.+..+++...| |+.
T Consensus 165 i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G-DlR 197 (482)
T PRK04195 165 IVPVLKRICRKEGIECDDEALKEIAERSGG-DLR 197 (482)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 9999998886654 556677777776544 444
No 69
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=1.8e-12 Score=136.23 Aligned_cols=150 Identities=14% Similarity=0.225 Sum_probs=99.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------eEEEeccccccCCCCChHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 212 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~------------------------~i~vs~~~l~s~~~Ge~~~~ir~~f~ 212 (438)
+.|..+|||||||||||++|+.+|+.++.. ++.+++.. ......+|++.+
T Consensus 38 ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e 111 (484)
T PRK14956 38 KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAAS------NRGIENIRELRD 111 (484)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhh------cccHHHHHHHHH
Confidence 456779999999999999999999998753 22222210 112345666655
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCC
Q 013704 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (438)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld 292 (438)
.+..........|+||||+|.+... ..+.|+..++ +...++.+|++|+.+..|.
T Consensus 112 ~l~~~p~~g~~KV~IIDEah~Ls~~-------------A~NALLKtLE-------------EPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 112 NVKFAPMGGKYKVYIIDEVHMLTDQ-------------SFNALLKTLE-------------EPPAHIVFILATTEFHKIP 165 (484)
T ss_pred HHHhhhhcCCCEEEEEechhhcCHH-------------HHHHHHHHhh-------------cCCCceEEEeecCChhhcc
Confidence 5432222456779999999988431 2344555444 5567888999999999999
Q ss_pred ccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCCC--CHHHHHHHHccCCc
Q 013704 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLVDTFPG 340 (438)
Q Consensus 293 ~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~v--~~~~la~l~~~~sg 340 (438)
+++++ |+..+.. -++.++..+.++.++...++ +.+.+..++....|
T Consensus 166 ~TI~S--RCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G 214 (484)
T PRK14956 166 ETILS--RCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG 214 (484)
T ss_pred HHHHh--hhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99999 8866555 46677777777777765554 44444444444333
No 70
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.45 E-value=1.2e-12 Score=130.23 Aligned_cols=157 Identities=16% Similarity=0.167 Sum_probs=101.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~ 236 (438)
..+.+++||||||||||++|+++|++++.++..+.++.+.. ...+...+.. ...+.+|||||++.+.+
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------~~~l~~~l~~------~~~~~vl~iDEi~~l~~ 95 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------PGDLAAILTN------LEEGDVLFIDEIHRLSP 95 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------chhHHHHHHh------cccCCEEEEehHhhhCH
Confidence 34678999999999999999999999998876665543321 1112222221 34678999999998854
Q ss_pred CCCCCccccchhHHHHHHHHHhhcCCC-ccccCCccc----cCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCC
Q 013704 237 RMGGTTQYTVNNQMVNATLMNIADNPT-NVQLPGMYN----QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 309 (438)
Q Consensus 237 ~r~~~~~~~~~~~~v~~~Ll~Lld~~~-~v~ldg~~~----~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~ 309 (438)
.. ...|.+++++-. .+-++..+. ....+.+.+|++||++..+++++++ ||...+. .|+
T Consensus 96 ~~-------------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~ 160 (305)
T TIGR00635 96 AV-------------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYT 160 (305)
T ss_pred HH-------------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCC
Confidence 21 122333332111 111111100 0123457788999999999999999 8877665 489
Q ss_pred HHHHHHHHHhhhCC--CCCCHHHHHHHHccCCc
Q 013704 310 REDRIGVCSGIFRT--DNVPKEDIVKLVDTFPG 340 (438)
Q Consensus 310 ~e~R~~Il~~~l~~--~~v~~~~la~l~~~~sg 340 (438)
.+++.++++..... ..++.+.+..+++...|
T Consensus 161 ~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G 193 (305)
T TIGR00635 161 VEELAEIVSRSAGLLNVEIEPEAALEIARRSRG 193 (305)
T ss_pred HHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC
Confidence 99999999876654 34555666666655444
No 71
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.45 E-value=2.5e-12 Score=128.71 Aligned_cols=150 Identities=17% Similarity=0.272 Sum_probs=101.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHH-hCCceeEEeccccccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGA 235 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~-~~~p~ILfIDEiD~l~ 235 (438)
..|..+||+||||+|||++++++|++++.+++.++++. . . ...++........... ...+.+|||||+|.+.
T Consensus 41 ~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~-----~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~ 113 (316)
T PHA02544 41 RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-C-----R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG 113 (316)
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-c-----c-HHHHHHHHHHHHHhhcccCCCeEEEEECccccc
Confidence 45778888999999999999999999999999998875 1 1 2233332222211111 2467899999999773
Q ss_pred cCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe-cCCHHHHH
Q 013704 236 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRI 314 (438)
Q Consensus 236 ~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~-lP~~e~R~ 314 (438)
.. ..+..|..+++ ....++++|+|||.++.+++++++ ||..+.. .|+.+++.
T Consensus 114 ~~------------~~~~~L~~~le-------------~~~~~~~~Ilt~n~~~~l~~~l~s--R~~~i~~~~p~~~~~~ 166 (316)
T PHA02544 114 LA------------DAQRHLRSFME-------------AYSKNCSFIITANNKNGIIEPLRS--RCRVIDFGVPTKEEQI 166 (316)
T ss_pred CH------------HHHHHHHHHHH-------------hcCCCceEEEEcCChhhchHHHHh--hceEEEeCCCCHHHHH
Confidence 21 12234444343 334677899999999999999999 8876555 69999998
Q ss_pred HHHHhhh-------CC--CCCCHHHHHHHHccCCc
Q 013704 315 GVCSGIF-------RT--DNVPKEDIVKLVDTFPG 340 (438)
Q Consensus 315 ~Il~~~l-------~~--~~v~~~~la~l~~~~sg 340 (438)
++++.++ .. ..++.+.+..++....|
T Consensus 167 ~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~ 201 (316)
T PHA02544 167 EMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP 201 (316)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC
Confidence 7766432 22 34455566777765544
No 72
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.44 E-value=1.7e-12 Score=127.49 Aligned_cols=146 Identities=16% Similarity=0.249 Sum_probs=93.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccc------cccCCCCChHHHHHHHHHHHH--------------HHHH
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE------LESGNAGEPAKLIRQRYREAA--------------DIIK 219 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~------l~s~~~Ge~~~~ir~~f~~A~--------------~~~~ 219 (438)
..+||+||||||||++|+++|+.+|.+++.+++.. +...+.+.....+..-|.... .+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 46899999999999999999999999999987643 333333222121111111000 0000
Q ss_pred -hCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCcccc----CCCCCceEEEecCCC-----C
Q 013704 220 -KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ----EENPRVPIIVTGNDF-----S 289 (438)
Q Consensus 220 -~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~----~~~~~v~VI~TTN~~-----~ 289 (438)
...+.+|+|||++.+-+ .+...|+.++++ ..+.+++.-.. ...++..||+|+|.. .
T Consensus 102 A~~~g~~lllDEi~r~~~-------------~~q~~Ll~~Le~-~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~ 167 (262)
T TIGR02640 102 AVREGFTLVYDEFTRSKP-------------ETNNVLLSVFEE-GVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVH 167 (262)
T ss_pred HHHcCCEEEEcchhhCCH-------------HHHHHHHHHhcC-CeEEccCCCCCCceEecCCCCEEEEeeCCcccccee
Confidence 23457999999997632 345667777763 33444432100 123567799999976 3
Q ss_pred CCCccccCCCcceEEEe-cCCHHHHHHHHHhhh
Q 013704 290 TLYAPLIRDGRMEKFYW-APTREDRIGVCSGIF 321 (438)
Q Consensus 290 ~Ld~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l 321 (438)
.++++|++ ||-.... .|+.++..+|++..+
T Consensus 168 ~l~~aL~~--R~~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 168 ETQDALLD--RLITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred cccHHHHh--hcEEEECCCCCHHHHHHHHHHhh
Confidence 67889999 8854333 699999999998765
No 73
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=6e-12 Score=137.27 Aligned_cols=177 Identities=12% Similarity=0.159 Sum_probs=114.8
Q ss_pred hhhccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------
Q 013704 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------ 186 (438)
Q Consensus 119 ~~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~------------ 186 (438)
..|--+|+++++.. .+....++++. ..+.+..+||+||+|||||++++++|+.+++.
T Consensus 9 KYRPqtFdEVIGQe---------~Vv~~L~~aL~--~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~ 77 (830)
T PRK07003 9 KWRPKDFASLVGQE---------HVVRALTHALD--GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 (830)
T ss_pred HhCCCcHHHHcCcH---------HHHHHHHHHHh--cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccH
Confidence 34444666776652 22223334333 23457889999999999999999999998652
Q ss_pred ------------eEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHH
Q 013704 187 ------------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNAT 254 (438)
Q Consensus 187 ------------~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~ 254 (438)
++.++... ......+|++.+.+...-......|+||||+|.+... ..+.
T Consensus 78 sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~-------------A~NA 138 (830)
T PRK07003 78 ACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNH-------------AFNA 138 (830)
T ss_pred HHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHH-------------HHHH
Confidence 22222211 1123456666665431111345679999999988431 1244
Q ss_pred HHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCCCC--HHHH
Q 013704 255 LMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVP--KEDI 331 (438)
Q Consensus 255 Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~v~--~~~l 331 (438)
|+..++ +...++.+|++||+++.|.+.|++ |+.++-+ -++.++..+.|+.++..+++. .+.+
T Consensus 139 LLKtLE-------------EPP~~v~FILaTtd~~KIp~TIrS--RCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL 203 (830)
T PRK07003 139 MLKTLE-------------EPPPHVKFILATTDPQKIPVTVLS--RCLQFNLKQMPAGHIVSHLERILGEERIAFEPQAL 203 (830)
T ss_pred HHHHHH-------------hcCCCeEEEEEECChhhccchhhh--heEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 555555 556788999999999999999999 8865555 468888888898888776654 5555
Q ss_pred HHHHccCCc
Q 013704 332 VKLVDTFPG 340 (438)
Q Consensus 332 a~l~~~~sg 340 (438)
..++....|
T Consensus 204 ~lIA~~A~G 212 (830)
T PRK07003 204 RLLARAAQG 212 (830)
T ss_pred HHHHHHcCC
Confidence 555555444
No 74
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.43 E-value=7.5e-12 Score=130.50 Aligned_cols=148 Identities=18% Similarity=0.197 Sum_probs=102.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCC
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 238 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r 238 (438)
+..++||||||||||++|+++|+.++..++.+++... ....++.+++.+..........||||||+|.+...
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~- 107 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA- 107 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-
Confidence 4579999999999999999999999999999887532 24456777776653333457899999999987421
Q ss_pred CCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEec--CCCCCCCccccCCCcceEEEe-cCCHHHHHH
Q 013704 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW-APTREDRIG 315 (438)
Q Consensus 239 ~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TT--N~~~~Ld~aLlR~GRfd~~i~-lP~~e~R~~ 315 (438)
....|+..++ ...+.+|++| |....++++|++ |+..+.. .|+.++...
T Consensus 108 ------------~q~~LL~~le---------------~~~iilI~att~n~~~~l~~aL~S--R~~~~~~~~ls~e~i~~ 158 (413)
T PRK13342 108 ------------QQDALLPHVE---------------DGTITLIGATTENPSFEVNPALLS--RAQVFELKPLSEEDIEQ 158 (413)
T ss_pred ------------HHHHHHHHhh---------------cCcEEEEEeCCCChhhhccHHHhc--cceeeEeCCCCHHHHHH
Confidence 1234555443 2445666644 445689999999 8843333 478889988
Q ss_pred HHHhhhCC----C-CCCHHHHHHHHccCCcchhH
Q 013704 316 VCSGIFRT----D-NVPKEDIVKLVDTFPGQSID 344 (438)
Q Consensus 316 Il~~~l~~----~-~v~~~~la~l~~~~sgadi~ 344 (438)
+++..+.. . .++.+.+..++....| ++.
T Consensus 159 lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R 191 (413)
T PRK13342 159 LLKRALEDKERGLVELDDEALDALARLANG-DAR 191 (413)
T ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHH
Confidence 88876643 1 5666666666665544 443
No 75
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=3.5e-12 Score=137.42 Aligned_cols=178 Identities=13% Similarity=0.169 Sum_probs=114.2
Q ss_pred hhhccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC-------------
Q 013704 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------------- 185 (438)
Q Consensus 119 ~~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~------------- 185 (438)
..|.-+|+++++..++ ....++.+.. .+.+..+||+||+|||||++|+.+|+.+++
T Consensus 9 KYRPqtFddVIGQe~v---------v~~L~~al~~--gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P 77 (700)
T PRK12323 9 KWRPRDFTTLVGQEHV---------VRALTHALEQ--QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP 77 (700)
T ss_pred HhCCCcHHHHcCcHHH---------HHHHHHHHHh--CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC
Confidence 3344456666665222 2223333332 356788999999999999999999999876
Q ss_pred ----------------ceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhH
Q 013704 186 ----------------NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 249 (438)
Q Consensus 186 ----------------~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~ 249 (438)
.++.+++.. ......+|++.+.....-...+..|+||||+|.+...
T Consensus 78 CG~C~sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~------------ 139 (700)
T PRK12323 78 CGQCRACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNH------------ 139 (700)
T ss_pred CcccHHHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHH------------
Confidence 122222221 1123456666665532222456689999999988421
Q ss_pred HHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCCCC-
Q 013704 250 MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVP- 327 (438)
Q Consensus 250 ~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~v~- 327 (438)
..+.|+..++ +...++.+|++||+++.|.+.+++ |+..+.. .++.++..+.++.++...++.
T Consensus 140 -AaNALLKTLE-------------EPP~~v~FILaTtep~kLlpTIrS--RCq~f~f~~ls~eei~~~L~~Il~~Egi~~ 203 (700)
T PRK12323 140 -AFNAMLKTLE-------------EPPEHVKFILATTDPQKIPVTVLS--RCLQFNLKQMPPGHIVSHLDAILGEEGIAH 203 (700)
T ss_pred -HHHHHHHhhc-------------cCCCCceEEEEeCChHhhhhHHHH--HHHhcccCCCChHHHHHHHHHHHHHcCCCC
Confidence 2345666554 556788999999999999999999 8855554 478888888888777665554
Q ss_pred -HHHHHHHHccCCcc
Q 013704 328 -KEDIVKLVDTFPGQ 341 (438)
Q Consensus 328 -~~~la~l~~~~sga 341 (438)
.+.+..++....|.
T Consensus 204 d~eAL~~IA~~A~Gs 218 (700)
T PRK12323 204 EVNALRLLAQAAQGS 218 (700)
T ss_pred CHHHHHHHHHHcCCC
Confidence 33344444444443
No 76
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.42 E-value=3.5e-12 Score=132.71 Aligned_cols=108 Identities=18% Similarity=0.265 Sum_probs=79.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccc-cCCCCChH-HHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEPA-KLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~-s~~~Ge~~-~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~ 236 (438)
..++||+||||||||++|+++|+.++.+|+.++++.+. .+|+|+.. ..+..+++.+...++...++||||||||++..
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~ 187 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIAR 187 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhcc
Confidence 47899999999999999999999999999999998875 47888754 34455555443233466889999999999987
Q ss_pred CCCC-CccccchhHHHHHHHHHhhcCCCcccc
Q 013704 237 RMGG-TTQYTVNNQMVNATLMNIADNPTNVQL 267 (438)
Q Consensus 237 ~r~~-~~~~~~~~~~v~~~Ll~Lld~~~~v~l 267 (438)
+.++ ....++....+++.|+++++ .+.+.+
T Consensus 188 ~~~~~~~~~d~s~~~vQ~~LL~~Le-g~~~~v 218 (412)
T PRK05342 188 KSENPSITRDVSGEGVQQALLKILE-GTVASV 218 (412)
T ss_pred ccCCCCcCCCcccHHHHHHHHHHHh-cCeEEe
Confidence 6332 11233444568889999886 333333
No 77
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.41 E-value=2.7e-12 Score=126.26 Aligned_cols=151 Identities=15% Similarity=0.249 Sum_probs=96.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCce------EEEeccccccCCCCChHHHHH---HHHHHHHHHHH--h---CCc-
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINP------IMMSAGELESGNAGEPAKLIR---QRYREAADIIK--K---GKM- 223 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~------i~vs~~~l~s~~~Ge~~~~ir---~~f~~A~~~~~--~---~~p- 223 (438)
-..+|||||||||||+.|++.|.++..+= ...+++.-. |-+ .++ +-|.+...... . +.|
T Consensus 57 lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSder----Gis--vvr~Kik~fakl~~~~~~~~~~~~~~f 130 (346)
T KOG0989|consen 57 LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDER----GIS--VVREKIKNFAKLTVLLKRSDGYPCPPF 130 (346)
T ss_pred CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccc----ccc--chhhhhcCHHHHhhccccccCCCCCcc
Confidence 35799999999999999999999987621 112222211 211 122 22333221111 1 222
Q ss_pred eeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceE
Q 013704 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 303 (438)
Q Consensus 224 ~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~ 303 (438)
-|+||||+|.+... ..++|...++ .....+.+|..||.++.|+.++.+ |..+
T Consensus 131 KiiIlDEcdsmtsd-------------aq~aLrr~mE-------------~~s~~trFiLIcnylsrii~pi~S--RC~K 182 (346)
T KOG0989|consen 131 KIIILDECDSMTSD-------------AQAALRRTME-------------DFSRTTRFILICNYLSRIIRPLVS--RCQK 182 (346)
T ss_pred eEEEEechhhhhHH-------------HHHHHHHHHh-------------ccccceEEEEEcCChhhCChHHHh--hHHH
Confidence 59999999998543 2366776555 446778899999999999999999 9988
Q ss_pred EEecC-CHHHHHHHHHhhhCCCCCCHH--HHHHHHccCCcchhH
Q 013704 304 FYWAP-TREDRIGVCSGIFRTDNVPKE--DIVKLVDTFPGQSID 344 (438)
Q Consensus 304 ~i~lP-~~e~R~~Il~~~l~~~~v~~~--~la~l~~~~sgadi~ 344 (438)
+.+-| ..+.....|+.+..+++++.+ .+..++.. ++.|+.
T Consensus 183 frFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~-S~GdLR 225 (346)
T KOG0989|consen 183 FRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKI-SDGDLR 225 (346)
T ss_pred hcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-cCCcHH
Confidence 88743 344456667777776666544 45554444 444554
No 78
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=5.4e-12 Score=133.47 Aligned_cols=150 Identities=13% Similarity=0.190 Sum_probs=100.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC------------------------ceEEEeccccccCCCCChHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI------------------------NPIMMSAGELESGNAGEPAKLIRQRYR 212 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~------------------------~~i~vs~~~l~s~~~Ge~~~~ir~~f~ 212 (438)
+.|..+|||||||||||++|+++|+.++. .++.++++. ...-..+|++.+
T Consensus 34 ~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~ 107 (472)
T PRK14962 34 SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRD 107 (472)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHH
Confidence 46778999999999999999999999765 244444321 112345566555
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCC
Q 013704 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (438)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld 292 (438)
.+...-......||||||+|.+... ....|+..++ ...+.+.+|++|+.+..++
T Consensus 108 ~~~~~p~~~~~kVvIIDE~h~Lt~~-------------a~~~LLk~LE-------------~p~~~vv~Ilattn~~kl~ 161 (472)
T PRK14962 108 AVGYRPMEGKYKVYIIDEVHMLTKE-------------AFNALLKTLE-------------EPPSHVVFVLATTNLEKVP 161 (472)
T ss_pred HHhhChhcCCeEEEEEEChHHhHHH-------------HHHHHHHHHH-------------hCCCcEEEEEEeCChHhhh
Confidence 4431111345679999999988421 2244555444 3445677787877888999
Q ss_pred ccccCCCcceEEEe-cCCHHHHHHHHHhhhCCC--CCCHHHHHHHHccCCc
Q 013704 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTD--NVPKEDIVKLVDTFPG 340 (438)
Q Consensus 293 ~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~--~v~~~~la~l~~~~sg 340 (438)
+++++ |+..+-. .|+.++...+++...... .++.+.+..++....|
T Consensus 162 ~~L~S--R~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G 210 (472)
T PRK14962 162 PTIIS--RCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG 210 (472)
T ss_pred HHHhc--CcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 99999 8754333 478888888888777554 4556667667665543
No 79
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.39 E-value=8.1e-12 Score=138.54 Aligned_cols=145 Identities=17% Similarity=0.229 Sum_probs=97.5
Q ss_pred CCC-cEEEEEcCCCCcHHHHHHHHHHHhCCceEEEecccccc-----CCCCChHHHH----HHHHHHHHHHHHhCCceeE
Q 013704 157 KVP-LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-----GNAGEPAKLI----RQRYREAADIIKKGKMCCL 226 (438)
Q Consensus 157 ~~p-~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s-----~~~Ge~~~~i----r~~f~~A~~~~~~~~p~IL 226 (438)
.+| ..+||+||||||||++|+++|+.++.+++.+++++... .+.|.+...+ ...+.++ ++....+||
T Consensus 485 ~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~---v~~~p~sVl 561 (758)
T PRK11034 485 HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDA---VIKHPHAVL 561 (758)
T ss_pred CCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHH---HHhCCCcEE
Confidence 445 46899999999999999999999999999999876532 2222211110 0122222 125667999
Q ss_pred EeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCC------------------
Q 013704 227 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF------------------ 288 (438)
Q Consensus 227 fIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~------------------ 288 (438)
||||+|++.+ .+.+.|++++++-....-.| ......+++||+|||.-
T Consensus 562 llDEieka~~-------------~v~~~LLq~ld~G~ltd~~g--~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~ 626 (758)
T PRK11034 562 LLDEIEKAHP-------------DVFNLLLQVMDNGTLTDNNG--RKADFRNVVLVMTTNAGVRETERKSIGLIHQDNST 626 (758)
T ss_pred EeccHhhhhH-------------HHHHHHHHHHhcCeeecCCC--ceecCCCcEEEEeCCcCHHHHhhcccCcccchhhH
Confidence 9999998842 46688888887432221111 12334688899999932
Q ss_pred -------CCCCccccCCCcceEEEec--CCHHHHHHHHHhhh
Q 013704 289 -------STLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIF 321 (438)
Q Consensus 289 -------~~Ld~aLlR~GRfd~~i~l--P~~e~R~~Il~~~l 321 (438)
..+.|+|+. |+|.++.+ .+.++..+|+..++
T Consensus 627 ~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l 666 (758)
T PRK11034 627 DAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_pred HHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHH
Confidence 125677888 99988875 57888888887554
No 80
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.39 E-value=6.1e-12 Score=132.18 Aligned_cols=192 Identities=18% Similarity=0.288 Sum_probs=114.6
Q ss_pred hccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCceEEEecccc
Q 013704 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGEL 195 (438)
Q Consensus 121 r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~l-----g~~~i~vs~~~l 195 (438)
..|+|+|.+.+ +. .+.....++.+...++. +..++||||||||||+|++++++++ +..++++++.++
T Consensus 100 ~~~tFdnFv~g----~~--n~~a~~~~~~~~~~~~~--~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f 171 (440)
T PRK14088 100 PDYTFENFVVG----PG--NSFAYHAALEVAKNPGR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_pred CCCcccccccC----Cc--hHHHHHHHHHHHhCcCC--CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 34667776644 21 12344455555544442 4569999999999999999999985 467788887765
Q ss_pred ccCCCCCh-HHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccC
Q 013704 196 ESGNAGEP-AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE 274 (438)
Q Consensus 196 ~s~~~Ge~-~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~ 274 (438)
...+...- ...+ .-|.... ...+.+|+|||++.+.++.. .+ ..+..++..+.+
T Consensus 172 ~~~~~~~~~~~~~-~~f~~~~----~~~~dvLlIDDi~~l~~~~~--~q-----~elf~~~n~l~~-------------- 225 (440)
T PRK14088 172 LNDLVDSMKEGKL-NEFREKY----RKKVDVLLIDDVQFLIGKTG--VQ-----TELFHTFNELHD-------------- 225 (440)
T ss_pred HHHHHHHHhcccH-HHHHHHH----HhcCCEEEEechhhhcCcHH--HH-----HHHHHHHHHHHH--------------
Confidence 53221100 0001 1122111 24689999999998865421 11 123333322222
Q ss_pred CCCCceEEEec-CCCCC---CCccccCCCcceE--EEe--cCCHHHHHHHHHhhhCC--CCCCHHHHHHHHccCCcchhH
Q 013704 275 ENPRVPIIVTG-NDFST---LYAPLIRDGRMEK--FYW--APTREDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQSID 344 (438)
Q Consensus 275 ~~~~v~VI~TT-N~~~~---Ld~aLlR~GRfd~--~i~--lP~~e~R~~Il~~~l~~--~~v~~~~la~l~~~~sgadi~ 344 (438)
.+..+|+|+ +.|.. +.+.+++ ||.. .+. .|+.+.|.+|++..... ..++.+.+..+++.+++.--+
T Consensus 226 --~~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~ 301 (440)
T PRK14088 226 --SGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRR 301 (440)
T ss_pred --cCCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHH
Confidence 223566665 45554 5567777 7742 333 49999999999988764 456677788888888774444
Q ss_pred HHHHHH
Q 013704 345 FFGALR 350 (438)
Q Consensus 345 ~~~al~ 350 (438)
+.+++.
T Consensus 302 L~g~l~ 307 (440)
T PRK14088 302 LRGAII 307 (440)
T ss_pred HHHHHH
Confidence 444433
No 81
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.38 E-value=4.6e-12 Score=131.14 Aligned_cols=155 Identities=16% Similarity=0.155 Sum_probs=101.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCce-----------------------EEEeccccccCCCCChHHHHHHHH
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINP-----------------------IMMSAGELESGNAGEPAKLIRQRY 211 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~-----------------------i~vs~~~l~s~~~Ge~~~~ir~~f 211 (438)
+.+.|.++||+||||+|||++|+++|+.+...- ..+.... . .-.-..||+++
T Consensus 32 ~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~~---~--~i~i~~iR~l~ 106 (394)
T PRK07940 32 GSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPEG---L--SIGVDEVRELV 106 (394)
T ss_pred CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEecccc---c--cCCHHHHHHHH
Confidence 345789999999999999999999999865431 1121110 1 11234577887
Q ss_pred HHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCC
Q 013704 212 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTL 291 (438)
Q Consensus 212 ~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~L 291 (438)
+.+...-......|+||||+|.+... ..+.|+..++ +...++.+|++|++++.|
T Consensus 107 ~~~~~~p~~~~~kViiIDead~m~~~-------------aanaLLk~LE-------------ep~~~~~fIL~a~~~~~l 160 (394)
T PRK07940 107 TIAARRPSTGRWRIVVIEDADRLTER-------------AANALLKAVE-------------EPPPRTVWLLCAPSPEDV 160 (394)
T ss_pred HHHHhCcccCCcEEEEEechhhcCHH-------------HHHHHHHHhh-------------cCCCCCeEEEEECChHHC
Confidence 76641111345679999999998432 1245666555 445566777777779999
Q ss_pred CccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCCCCHH---HHHHHHccCCcchhHH
Q 013704 292 YAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVPKE---DIVKLVDTFPGQSIDF 345 (438)
Q Consensus 292 d~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~v~~~---~la~l~~~~sgadi~~ 345 (438)
.+.+++ |+-.+.. .|+.++..+.+... .+++.+ .++.++.|.++..+.+
T Consensus 161 lpTIrS--Rc~~i~f~~~~~~~i~~~L~~~---~~~~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 161 LPTIRS--RCRHVALRTPSVEAVAEVLVRR---DGVDPETARRAARASQGHIGRARRL 213 (394)
T ss_pred hHHHHh--hCeEEECCCCCHHHHHHHHHHh---cCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 999999 8854443 58888887777532 245555 4556666766666553
No 82
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.37 E-value=1.7e-11 Score=136.32 Aligned_cols=143 Identities=15% Similarity=0.211 Sum_probs=98.7
Q ss_pred CCCCc-EEEEEcCCCCcHHHHHHHHHHHhCCceEEEecccccc------------CCCCCh-HHHHHHHHHHHHHHHHhC
Q 013704 156 VKVPL-ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES------------GNAGEP-AKLIRQRYREAADIIKKG 221 (438)
Q Consensus 156 ~~~p~-glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s------------~~~Ge~-~~~ir~~f~~A~~~~~~~ 221 (438)
...|. .+||+||||||||++|+++|+.++.+++.++++++.. +|+|.. ...+.+.. +..
T Consensus 480 ~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~-------~~~ 552 (731)
T TIGR02639 480 PNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAV-------RKH 552 (731)
T ss_pred CCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHH-------HhC
Confidence 34565 4889999999999999999999999999999877542 233321 11222221 256
Q ss_pred CceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC------------
Q 013704 222 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS------------ 289 (438)
Q Consensus 222 ~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~------------ 289 (438)
..+||||||+|++.+ .+...|++++|+-... ++........++.||+|||...
T Consensus 553 p~~VvllDEieka~~-------------~~~~~Ll~~ld~g~~~--d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~ 617 (731)
T TIGR02639 553 PHCVLLLDEIEKAHP-------------DIYNILLQVMDYATLT--DNNGRKADFRNVILIMTSNAGASEMSKPPIGFGS 617 (731)
T ss_pred CCeEEEEechhhcCH-------------HHHHHHHHhhccCeee--cCCCcccCCCCCEEEECCCcchhhhhhccCCcch
Confidence 778999999997743 3567888888842221 1111123346788999998742
Q ss_pred -------------CCCccccCCCcceEEEec--CCHHHHHHHHHhhhC
Q 013704 290 -------------TLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 322 (438)
Q Consensus 290 -------------~Ld~aLlR~GRfd~~i~l--P~~e~R~~Il~~~l~ 322 (438)
.+.|+|+. |||.++.+ .+.++..+|++..+.
T Consensus 618 ~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 618 ENVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVD 663 (731)
T ss_pred hhhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 24667776 99988885 588889999886654
No 83
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.37 E-value=1.8e-11 Score=124.63 Aligned_cols=141 Identities=16% Similarity=0.229 Sum_probs=88.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC---------CceEEEeccccccC----------C---------CCC-hHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGELESG----------N---------AGE-PAKLI 207 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg---------~~~i~vs~~~l~s~----------~---------~Ge-~~~~i 207 (438)
..|..++|+||||||||++++++++++. +.++++++....+. . .|. ..+..
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 117 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVF 117 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHH
Confidence 4567899999999999999999998753 56777887543321 0 010 11222
Q ss_pred HHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCC
Q 013704 208 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 287 (438)
Q Consensus 208 r~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~ 287 (438)
+.+++... +...+.||+|||+|.+.+.. + .+...|+.+.+ +......++.+|+++|+
T Consensus 118 ~~l~~~l~---~~~~~~vlvIDE~d~L~~~~----~------~~L~~l~~~~~----------~~~~~~~~v~lI~i~n~ 174 (365)
T TIGR02928 118 RRLYKELN---ERGDSLIIVLDEIDYLVGDD----D------DLLYQLSRARS----------NGDLDNAKVGVIGISND 174 (365)
T ss_pred HHHHHHHH---hcCCeEEEEECchhhhccCC----c------HHHHhHhcccc----------ccCCCCCeEEEEEEECC
Confidence 23332211 24668899999999997321 1 12223333211 01122367889999998
Q ss_pred CC---CCCccccCCCcce-EEEe--cCCHHHHHHHHHhhhC
Q 013704 288 FS---TLYAPLIRDGRME-KFYW--APTREDRIGVCSGIFR 322 (438)
Q Consensus 288 ~~---~Ld~aLlR~GRfd-~~i~--lP~~e~R~~Il~~~l~ 322 (438)
++ .+++.+.+ ||. ..+. .++.++..+|++..+.
T Consensus 175 ~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 175 LKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred cchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 86 47778877 664 3344 3789999999987664
No 84
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=1.5e-11 Score=136.45 Aligned_cols=180 Identities=15% Similarity=0.193 Sum_probs=110.1
Q ss_pred hhhccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceE-------EEe
Q 013704 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPI-------MMS 191 (438)
Q Consensus 119 ~~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i-------~vs 191 (438)
..|..+|++++|..++ ....++.+.. .+.|..+||+||||||||++|+++|+.++..-. .+.
T Consensus 9 KyRP~tFddIIGQe~I---------v~~LknaI~~--~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~ 77 (944)
T PRK14949 9 KWRPATFEQMVGQSHV---------LHALTNALTQ--QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCS 77 (944)
T ss_pred HhCCCCHHHhcCcHHH---------HHHHHHHHHh--CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCch
Confidence 4455566777765222 2223444432 256778899999999999999999999876410 000
Q ss_pred -ccccccC-------CCC---ChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhc
Q 013704 192 -AGELESG-------NAG---EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 260 (438)
Q Consensus 192 -~~~l~s~-------~~G---e~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld 260 (438)
|-.+... +-+ .....+|++.+.+...-..+...|+||||+|.+.. ...+.|+..++
T Consensus 78 sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~-------------eAqNALLKtLE 144 (944)
T PRK14949 78 SCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR-------------SSFNALLKTLE 144 (944)
T ss_pred HHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH-------------HHHHHHHHHHh
Confidence 0000000 001 12344666655443111145667999999998832 23356666555
Q ss_pred CCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCCCC--HHHHHHHHcc
Q 013704 261 NPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVP--KEDIVKLVDT 337 (438)
Q Consensus 261 ~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~v~--~~~la~l~~~ 337 (438)
+...++.+|++|+.+..|.+.|++ |+-++.. -++.++..+.++.++...++. .+.+..++..
T Consensus 145 -------------EPP~~vrFILaTTe~~kLl~TIlS--RCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~ 209 (944)
T PRK14949 145 -------------EPPEHVKFLLATTDPQKLPVTVLS--RCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKA 209 (944)
T ss_pred -------------ccCCCeEEEEECCCchhchHHHHH--hheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 556778888889999999999998 8755444 367888888888777655554 3344444433
No 85
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.36 E-value=8.3e-12 Score=134.85 Aligned_cols=150 Identities=13% Similarity=0.199 Sum_probs=103.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC------------------------ceEEEeccccccCCCCChHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI------------------------NPIMMSAGELESGNAGEPAKLIRQRYR 212 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~------------------------~~i~vs~~~l~s~~~Ge~~~~ir~~f~ 212 (438)
+.+..+||+||||||||++|+++|+.+++ .++.++++.- .....+|.+..
T Consensus 35 rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~ 108 (702)
T PRK14960 35 RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLD 108 (702)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHH
Confidence 55788999999999999999999999875 2333333210 12345666665
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCC
Q 013704 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (438)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld 292 (438)
.+...-..++..|+||||+|.+... ..+.|+.+++ +...++.+|++|+++..++
T Consensus 109 ~~~y~P~~gk~KV~IIDEVh~LS~~-------------A~NALLKtLE-------------EPP~~v~FILaTtd~~kIp 162 (702)
T PRK14960 109 NVPYAPTQGRFKVYLIDEVHMLSTH-------------SFNALLKTLE-------------EPPEHVKFLFATTDPQKLP 162 (702)
T ss_pred HHhhhhhcCCcEEEEEechHhcCHH-------------HHHHHHHHHh-------------cCCCCcEEEEEECChHhhh
Confidence 5432112456689999999988432 2245666555 4456778999999999999
Q ss_pred ccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCCC--CHHHHHHHHccCCc
Q 013704 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLVDTFPG 340 (438)
Q Consensus 293 ~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~v--~~~~la~l~~~~sg 340 (438)
+.+++ |+.++-. .++.++..+.++.++...++ +.+.+..++....|
T Consensus 163 ~TIlS--RCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G 211 (702)
T PRK14960 163 ITVIS--RCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG 211 (702)
T ss_pred HHHHH--hhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99887 8865544 47888888888888876554 45556556655443
No 86
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.35 E-value=7.9e-12 Score=129.76 Aligned_cols=127 Identities=18% Similarity=0.257 Sum_probs=87.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccc-cCCCCCh-HHHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~-s~~~Ge~-~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~ 236 (438)
+..+||+||||||||++|+++|+.++.+|..+++..+. .+|+|.. +..+..+++.+...++...++||||||+|++..
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~ 195 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR 195 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch
Confidence 36899999999999999999999999999999988765 4688874 445555555433233356789999999999987
Q ss_pred CCCC-CccccchhHHHHHHHHHhhcCCCccccC--CccccCCCCCceEEEecCC
Q 013704 237 RMGG-TTQYTVNNQMVNATLMNIADNPTNVQLP--GMYNQEENPRVPIIVTGND 287 (438)
Q Consensus 237 ~r~~-~~~~~~~~~~v~~~Ll~Lld~~~~v~ld--g~~~~~~~~~v~VI~TTN~ 287 (438)
++.+ .....+....+++.|+++++ -..+.++ |- ......+.++|.|+|-
T Consensus 196 ~~~~~s~~~dvsg~~vq~~LL~iLe-G~~~~v~~~~g-r~~~~~~~i~i~TsNi 247 (413)
T TIGR00382 196 KSENPSITRDVSGEGVQQALLKIIE-GTVANVPPQGG-RKHPYQEFIQIDTSNI 247 (413)
T ss_pred hhccccccccccchhHHHHHHHHhh-ccceecccCCC-ccccCCCeEEEEcCCc
Confidence 6332 11223444568888999885 3333221 11 1122355667778776
No 87
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=6.3e-11 Score=132.46 Aligned_cols=177 Identities=12% Similarity=0.090 Sum_probs=111.2
Q ss_pred hhhccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------
Q 013704 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------ 186 (438)
Q Consensus 119 ~~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~------------ 186 (438)
.+|-.+|+++++..+ +....++++.. .+.+..+|||||+|||||++|+++|+.+.+.
T Consensus 8 KyRP~~f~eiiGqe~---------v~~~L~~~i~~--~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~ 76 (824)
T PRK07764 8 RYRPATFAEVIGQEH---------VTEPLSTALDS--GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECD 76 (824)
T ss_pred HhCCCCHHHhcCcHH---------HHHHHHHHHHh--CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccH
Confidence 344446667666422 22223333332 3567789999999999999999999998642
Q ss_pred --------------eEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHH
Q 013704 187 --------------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVN 252 (438)
Q Consensus 187 --------------~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~ 252 (438)
++.+++... ..-..||++-+.+...-......|+||||+|.|.. ...
T Consensus 77 sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-------------~a~ 137 (824)
T PRK07764 77 SCVALAPGGPGSLDVTEIDAASH------GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-------------QGF 137 (824)
T ss_pred HHHHHHcCCCCCCcEEEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-------------HHH
Confidence 222222110 11344555444332111146677999999998843 223
Q ss_pred HHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCCC--CHH
Q 013704 253 ATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKE 329 (438)
Q Consensus 253 ~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~v--~~~ 329 (438)
+.|+++++ +...++.+|++|+.++.|.+.|++ |+..+.+ .++.++..++|+.++...++ +.+
T Consensus 138 NaLLK~LE-------------EpP~~~~fIl~tt~~~kLl~TIrS--Rc~~v~F~~l~~~~l~~~L~~il~~EGv~id~e 202 (824)
T PRK07764 138 NALLKIVE-------------EPPEHLKFIFATTEPDKVIGTIRS--RTHHYPFRLVPPEVMRGYLERICAQEGVPVEPG 202 (824)
T ss_pred HHHHHHHh-------------CCCCCeEEEEEeCChhhhhHHHHh--heeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 56777665 556778888888899999999988 7654444 47888888888888876665 444
Q ss_pred HHHHHHccCCc
Q 013704 330 DIVKLVDTFPG 340 (438)
Q Consensus 330 ~la~l~~~~sg 340 (438)
.+..++....|
T Consensus 203 al~lLa~~sgG 213 (824)
T PRK07764 203 VLPLVIRAGGG 213 (824)
T ss_pred HHHHHHHHcCC
Confidence 44444444433
No 88
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=2.1e-11 Score=125.11 Aligned_cols=150 Identities=13% Similarity=0.161 Sum_probs=96.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------eEEEeccccccCCCCChHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 212 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~------------------------~i~vs~~~l~s~~~Ge~~~~ir~~f~ 212 (438)
+.|..+||+||||+|||++|+++|+++... ++.++++. ......++++.+
T Consensus 36 ~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~ 109 (363)
T PRK14961 36 RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILD 109 (363)
T ss_pred CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHH
Confidence 467889999999999999999999998642 11121110 012334555555
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCC
Q 013704 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (438)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld 292 (438)
.+...-......|+||||+|.+.. ...+.|+..++ +...++.+|++|+.++.+.
T Consensus 110 ~~~~~p~~~~~kviIIDEa~~l~~-------------~a~naLLk~lE-------------e~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 110 NIYYSPSKSRFKVYLIDEVHMLSR-------------HSFNALLKTLE-------------EPPQHIKFILATTDVEKIP 163 (363)
T ss_pred HHhcCcccCCceEEEEEChhhcCH-------------HHHHHHHHHHh-------------cCCCCeEEEEEcCChHhhh
Confidence 432000023456999999998732 11234555444 3456677888888899999
Q ss_pred ccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCC--CCHHHHHHHHccCCc
Q 013704 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDTFPG 340 (438)
Q Consensus 293 ~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~--v~~~~la~l~~~~sg 340 (438)
+++++ |+-.+-. -|+.++..++++..+...+ ++.+.+..++....|
T Consensus 164 ~tI~S--Rc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G 212 (363)
T PRK14961 164 KTILS--RCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG 212 (363)
T ss_pred HHHHh--hceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99988 7743322 3789999999988777655 555555555544433
No 89
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=4.5e-11 Score=130.12 Aligned_cols=165 Identities=15% Similarity=0.187 Sum_probs=107.1
Q ss_pred hhhccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------
Q 013704 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------ 186 (438)
Q Consensus 119 ~~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~------------ 186 (438)
..|..+|++++|..++ ....++.+.. .+.|..+||+||||||||++|+++|+.+++.
T Consensus 9 KyRP~~f~divGQe~v---------v~~L~~~l~~--~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (647)
T PRK07994 9 KWRPQTFAEVVGQEHV---------LTALANALDL--GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECD 77 (647)
T ss_pred HhCCCCHHHhcCcHHH---------HHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCH
Confidence 3444566777765222 2222333332 2467789999999999999999999998763
Q ss_pred ------------eEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHH
Q 013704 187 ------------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNAT 254 (438)
Q Consensus 187 ------------~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~ 254 (438)
++.+++.. ......+|++.+.+...-..+...|+||||+|.+... ..+.
T Consensus 78 ~C~~i~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~-------------a~NA 138 (647)
T PRK07994 78 NCREIEQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRH-------------SFNA 138 (647)
T ss_pred HHHHHHcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHH-------------HHHH
Confidence 22222211 0123456666655431111456679999999988432 2355
Q ss_pred HHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCCCCH
Q 013704 255 LMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVPK 328 (438)
Q Consensus 255 Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~v~~ 328 (438)
|+..++ +...++.+|++|+++..|.+.+++ |+-.+.. -++.++..+.++.++...++..
T Consensus 139 LLKtLE-------------EPp~~v~FIL~Tt~~~kLl~TI~S--RC~~~~f~~Ls~~ei~~~L~~il~~e~i~~ 198 (647)
T PRK07994 139 LLKTLE-------------EPPEHVKFLLATTDPQKLPVTILS--RCLQFHLKALDVEQIRQQLEHILQAEQIPF 198 (647)
T ss_pred HHHHHH-------------cCCCCeEEEEecCCccccchHHHh--hheEeeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 666555 556788899989999999999998 8744444 3778888888888776555543
No 90
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.33 E-value=4.4e-11 Score=132.19 Aligned_cols=147 Identities=18% Similarity=0.216 Sum_probs=99.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHH-hCCceeEEeccccccccC
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGR 237 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~-~~~p~ILfIDEiD~l~~~ 237 (438)
...++||||||||||++|+++|+..+.+++.+++... ..+.++..+..+..... .....+|||||+|.+...
T Consensus 52 ~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~ 124 (725)
T PRK13341 52 VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA 124 (725)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH
Confidence 3478999999999999999999999999888876521 12345556665533332 346789999999987422
Q ss_pred CCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEec--CCCCCCCccccCCCcceEEEe--cCCHHHH
Q 013704 238 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW--APTREDR 313 (438)
Q Consensus 238 r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TT--N~~~~Ld~aLlR~GRfd~~i~--lP~~e~R 313 (438)
....|+..++ ...+.+|++| |....+++++++ |+.. +. -++.+++
T Consensus 125 -------------qQdaLL~~lE---------------~g~IiLI~aTTenp~~~l~~aL~S--R~~v-~~l~pLs~edi 173 (725)
T PRK13341 125 -------------QQDALLPWVE---------------NGTITLIGATTENPYFEVNKALVS--RSRL-FRLKSLSDEDL 173 (725)
T ss_pred -------------HHHHHHHHhc---------------CceEEEEEecCCChHhhhhhHhhc--cccc-eecCCCCHHHH
Confidence 1234544333 2456677644 444678999998 5533 44 3788999
Q ss_pred HHHHHhhhC-------C--CCCCHHHHHHHHccCCcchhH
Q 013704 314 IGVCSGIFR-------T--DNVPKEDIVKLVDTFPGQSID 344 (438)
Q Consensus 314 ~~Il~~~l~-------~--~~v~~~~la~l~~~~sgadi~ 344 (438)
..|++.++. . ..++.+.+..++...+| |+.
T Consensus 174 ~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R 212 (725)
T PRK13341 174 HQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DAR 212 (725)
T ss_pred HHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHH
Confidence 999987765 2 35667778888876654 444
No 91
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=8.3e-11 Score=129.06 Aligned_cols=171 Identities=23% Similarity=0.271 Sum_probs=122.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH----------hCCceEEEecccccc--CCCCChHHHHHHHHHHHHHHHHhCCceeE
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK----------MGINPIMMSAGELES--GNAGEPAKLIRQRYREAADIIKKGKMCCL 226 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~----------lg~~~i~vs~~~l~s--~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL 226 (438)
..+-+|.|+||+|||.+++-+|.. .+..++.++.+.|.. +|.|+.++.++.+.++.. +..+.||
T Consensus 191 KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~----~~~~vIL 266 (786)
T COG0542 191 KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVE----KSKNVIL 266 (786)
T ss_pred CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHh----cCCCeEE
Confidence 345678899999999999999998 356777888877764 799999999999999886 6779999
Q ss_pred EeccccccccCCCCCcccc-chhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecC-----CCCCCCccccCCCc
Q 013704 227 FINDLDAGAGRMGGTTQYT-VNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN-----DFSTLYAPLIRDGR 300 (438)
Q Consensus 227 fIDEiD~l~~~r~~~~~~~-~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN-----~~~~Ld~aLlR~GR 300 (438)
||||++.+.+... +.++ +. ..+.|.-.+- +..+-+|++|. ..-.-|+||-| |
T Consensus 267 FIDEiHtiVGAG~--~~G~a~D---AaNiLKPaLA---------------RGeL~~IGATT~~EYRk~iEKD~AL~R--R 324 (786)
T COG0542 267 FIDEIHTIVGAGA--TEGGAMD---AANLLKPALA---------------RGELRCIGATTLDEYRKYIEKDAALER--R 324 (786)
T ss_pred EEechhhhcCCCc--ccccccc---hhhhhHHHHh---------------cCCeEEEEeccHHHHHHHhhhchHHHh--c
Confidence 9999999987632 2111 11 1122222111 46677888663 23456999999 9
Q ss_pred ceEEEe-cCCHHHHHHHHHhhhC----CCCC--CHHH---HHHHHcc------CCcchhHHHHHHHHhhhh
Q 013704 301 MEKFYW-APTREDRIGVCSGIFR----TDNV--PKED---IVKLVDT------FPGQSIDFFGALRARVYD 355 (438)
Q Consensus 301 fd~~i~-lP~~e~R~~Il~~~l~----~~~v--~~~~---la~l~~~------~sgadi~~~~al~~~~~~ 355 (438)
|..++- .|+.++-+.|++.+-. .++| ..+. .+.++.+ +|...|+++...++++..
T Consensus 325 FQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~l 395 (786)
T COG0542 325 FQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVRL 395 (786)
T ss_pred CceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHHh
Confidence 988777 6999999999985543 2443 3333 3445544 477888888888877655
No 92
>PLN03025 replication factor C subunit; Provisional
Probab=99.32 E-value=8.1e-12 Score=125.83 Aligned_cols=149 Identities=13% Similarity=0.194 Sum_probs=97.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC-----CceEEEeccccccCCCCChHHHHHHHHHHHHHH---HHhCCceeEEecccc
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELESGNAGEPAKLIRQRYREAADI---IKKGKMCCLFINDLD 232 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg-----~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~---~~~~~p~ILfIDEiD 232 (438)
++|||||||||||++|+++|+++. ..++.+++++.. | ...++...+..... .......|+||||+|
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~----~--~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d 109 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDR----G--IDVVRNKIKMFAQKKVTLPPGRHKIVILDEAD 109 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccc----c--HHHHHHHHHHHHhccccCCCCCeEEEEEechh
Confidence 589999999999999999999972 235555554322 1 12344443322100 001356799999999
Q ss_pred ccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe-cCCHH
Q 013704 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRE 311 (438)
Q Consensus 233 ~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~-lP~~e 311 (438)
.+... ....|+..++ .....+.+|++||..+.+.++|++ |+..+-. .|+.+
T Consensus 110 ~lt~~-------------aq~aL~~~lE-------------~~~~~t~~il~~n~~~~i~~~L~S--Rc~~i~f~~l~~~ 161 (319)
T PLN03025 110 SMTSG-------------AQQALRRTME-------------IYSNTTRFALACNTSSKIIEPIQS--RCAIVRFSRLSDQ 161 (319)
T ss_pred hcCHH-------------HHHHHHHHHh-------------cccCCceEEEEeCCccccchhHHH--hhhcccCCCCCHH
Confidence 88432 1244555444 233456688899999999999998 7643222 48889
Q ss_pred HHHHHHHhhhCCCC--CCHHHHHHHHccCCcchhH
Q 013704 312 DRIGVCSGIFRTDN--VPKEDIVKLVDTFPGQSID 344 (438)
Q Consensus 312 ~R~~Il~~~l~~~~--v~~~~la~l~~~~sgadi~ 344 (438)
+....++.+....+ ++.+.+..++....| |+.
T Consensus 162 ~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR 195 (319)
T PLN03025 162 EILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMR 195 (319)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 99999988877655 456677777776554 544
No 93
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.32 E-value=2.1e-11 Score=128.49 Aligned_cols=193 Identities=13% Similarity=0.134 Sum_probs=118.0
Q ss_pred ccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCceEEEeccccc
Q 013704 122 QYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELE 196 (438)
Q Consensus 122 ~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~l-----g~~~i~vs~~~l~ 196 (438)
.|+|+|.+.+ +. .+.....++.+...++. ....++||||+|||||+|++++++++ +..++++++.++.
T Consensus 111 ~~tFdnFv~g----~~--n~~A~~aa~~~a~~~~~-~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~ 183 (450)
T PRK14087 111 ENTFENFVIG----SS--NEQAFIAVQTVSKNPGI-SYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFA 183 (450)
T ss_pred ccchhcccCC----Cc--HHHHHHHHHHHHhCcCc-ccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 4677776654 21 13344555665554543 23569999999999999999999964 4678888887766
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCC
Q 013704 197 SGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 276 (438)
Q Consensus 197 s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~ 276 (438)
..+...-.... ..+....+ +-..+.+|+|||++.+.++.. ....|..+++ . ...
T Consensus 184 ~~~~~~l~~~~-~~~~~~~~--~~~~~dvLiIDDiq~l~~k~~-----------~~e~lf~l~N----------~--~~~ 237 (450)
T PRK14087 184 RKAVDILQKTH-KEIEQFKN--EICQNDVLIIDDVQFLSYKEK-----------TNEIFFTIFN----------N--FIE 237 (450)
T ss_pred HHHHHHHHHhh-hHHHHHHH--HhccCCEEEEeccccccCCHH-----------HHHHHHHHHH----------H--HHH
Confidence 43322111000 11111110 134677999999998865421 1123333333 0 111
Q ss_pred CCceEEEecCCCC----CCCccccCCCcceEE--Ee--cCCHHHHHHHHHhhhCCC----CCCHHHHHHHHccCCcchhH
Q 013704 277 PRVPIIVTGNDFS----TLYAPLIRDGRMEKF--YW--APTREDRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSID 344 (438)
Q Consensus 277 ~~v~VI~TTN~~~----~Ld~aLlR~GRfd~~--i~--lP~~e~R~~Il~~~l~~~----~v~~~~la~l~~~~sgadi~ 344 (438)
.+..+|+|+|.+- .+++.|.+ ||..- +. .|+.++|.+|++..+... .++.+.+..++..++|-.-.
T Consensus 238 ~~k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~ 315 (450)
T PRK14087 238 NDKQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRK 315 (450)
T ss_pred cCCcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHH
Confidence 2336788887642 35677888 77643 33 499999999999777653 46677788888888775555
Q ss_pred HHHHH
Q 013704 345 FFGAL 349 (438)
Q Consensus 345 ~~~al 349 (438)
+.+++
T Consensus 316 L~gaL 320 (450)
T PRK14087 316 IKGSV 320 (450)
T ss_pred HHHHH
Confidence 55333
No 94
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.31 E-value=6.3e-11 Score=122.04 Aligned_cols=161 Identities=16% Similarity=0.221 Sum_probs=95.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCceEEEecccccc----------CCCC----ChHHHHHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELES----------GNAG----EPAKLIRQRYREAADI 217 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l-----g~~~i~vs~~~l~s----------~~~G----e~~~~ir~~f~~A~~~ 217 (438)
..|..++||||||||||++++.+++++ +..++++++....+ .+.+ .......++++...+.
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 132 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEY 132 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHH
Confidence 446679999999999999999999986 57788888764322 1111 0011122333333323
Q ss_pred HH-hCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC---CCCc
Q 013704 218 IK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS---TLYA 293 (438)
Q Consensus 218 ~~-~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~---~Ld~ 293 (438)
++ ...+.||+|||+|.+..+.. + .+...|+.+.+ .....++.+|+++|..+ .+++
T Consensus 133 l~~~~~~~viviDE~d~l~~~~~---~------~~l~~l~~~~~------------~~~~~~v~vI~i~~~~~~~~~l~~ 191 (394)
T PRK00411 133 LDERDRVLIVALDDINYLFEKEG---N------DVLYSLLRAHE------------EYPGARIGVIGISSDLTFLYILDP 191 (394)
T ss_pred HHhcCCEEEEEECCHhHhhccCC---c------hHHHHHHHhhh------------ccCCCeEEEEEEECCcchhhhcCH
Confidence 33 45678999999999973211 1 22333444222 11234788999998764 4666
Q ss_pred cccCCCcce-EEEec--CCHHHHHHHHHhhhCC----CCCCHHH---HHHHHccCCc
Q 013704 294 PLIRDGRME-KFYWA--PTREDRIGVCSGIFRT----DNVPKED---IVKLVDTFPG 340 (438)
Q Consensus 294 aLlR~GRfd-~~i~l--P~~e~R~~Il~~~l~~----~~v~~~~---la~l~~~~sg 340 (438)
.+.+ ||. ..+.+ ++.++..+|++..+.. ..++.+. +++.+.+.+|
T Consensus 192 ~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G 246 (394)
T PRK00411 192 RVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHG 246 (394)
T ss_pred HHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcC
Confidence 6666 553 33443 6889999999866542 2355444 3444444344
No 95
>PRK06893 DNA replication initiation factor; Validated
Probab=99.31 E-value=9.7e-12 Score=119.65 Aligned_cols=147 Identities=16% Similarity=0.164 Sum_probs=91.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~ 236 (438)
..++||||||||||+|++++|+++ +....+++..... .....+++. ..+..+|+|||++.+.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~------~~~~dlLilDDi~~~~~ 105 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLEN------LEQQDLVCLDDLQAVIG 105 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhh------cccCCEEEEeChhhhcC
Confidence 358999999999999999999985 4455555543211 011122221 23467999999998865
Q ss_pred CCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEec-CCCCCCC---ccccCCCcceEEEe--cCCH
Q 013704 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG-NDFSTLY---APLIRDGRMEKFYW--APTR 310 (438)
Q Consensus 237 ~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TT-N~~~~Ld---~aLlR~GRfd~~i~--lP~~ 310 (438)
... ....|.++++ ...+ ....++|.|+ ..|..++ +.|.++.++...+. .|+.
T Consensus 106 ~~~-----------~~~~l~~l~n----------~~~~-~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~ 163 (229)
T PRK06893 106 NEE-----------WELAIFDLFN----------RIKE-QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTD 163 (229)
T ss_pred ChH-----------HHHHHHHHHH----------HHHH-cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCH
Confidence 421 1123444443 0101 1223344445 4566554 78988555556666 4999
Q ss_pred HHHHHHHHhhhCC--CCCCHHHHHHHHccCCcch
Q 013704 311 EDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQS 342 (438)
Q Consensus 311 e~R~~Il~~~l~~--~~v~~~~la~l~~~~sgad 342 (438)
++|.+|++..... ..++.+.+..++..+++.-
T Consensus 164 e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~ 197 (229)
T PRK06893 164 EQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDM 197 (229)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCH
Confidence 9999999966654 4566777888888887643
No 96
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.29 E-value=2.2e-11 Score=104.92 Aligned_cols=128 Identities=20% Similarity=0.233 Sum_probs=80.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l 234 (438)
....++|+||||||||++++.+++.+ +.+++.+++................ .............+.+|+|||++.+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lilDe~~~~ 96 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF-LVRLLFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh-hHhHHHHhhccCCCeEEEEeChhhh
Confidence 45689999999999999999999998 8899999887655332211111000 0011111122667899999999987
Q ss_pred ccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC--CCCccccCCCcceEEEecC
Q 013704 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS--TLYAPLIRDGRMEKFYWAP 308 (438)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~--~Ld~aLlR~GRfd~~i~lP 308 (438)
... ....+++++. .+.. +. ....++.+|++||... .+++.+.+ ||+..+.+|
T Consensus 97 ~~~-------------~~~~~~~~i~-----~~~~-~~-~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 97 SRG-------------AQNALLRVLE-----TLND-LR-IDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred hHH-------------HHHHHHHHHH-----hcCc-ee-ccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 211 1122333232 0000 00 1246789999999887 67888888 998777654
No 97
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=1.9e-11 Score=130.47 Aligned_cols=177 Identities=15% Similarity=0.198 Sum_probs=110.4
Q ss_pred hhhccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------
Q 013704 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------ 186 (438)
Q Consensus 119 ~~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~------------ 186 (438)
..|.-+|++++|..++ ....++.+.. .+.|..+||+||||||||++|+++|+.++..
T Consensus 9 kyRP~~f~divGq~~v---------~~~L~~~~~~--~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 77 (509)
T PRK14958 9 KWRPRCFQEVIGQAPV---------VRALSNALDQ--QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCE 77 (509)
T ss_pred HHCCCCHHHhcCCHHH---------HHHHHHHHHh--CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCH
Confidence 3344456677665222 2233444432 3557789999999999999999999998653
Q ss_pred ------------eEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHH
Q 013704 187 ------------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNAT 254 (438)
Q Consensus 187 ------------~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~ 254 (438)
++.++++. ......+|++.+.+...-...+..|+||||+|.+... ..+.
T Consensus 78 ~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~-------------a~na 138 (509)
T PRK14958 78 NCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH-------------SFNA 138 (509)
T ss_pred HHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH-------------HHHH
Confidence 33444321 1123346666554421111345579999999988532 1245
Q ss_pred HHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCCCC--HHHH
Q 013704 255 LMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVP--KEDI 331 (438)
Q Consensus 255 Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~v~--~~~l 331 (438)
|+..++ +..+++.+|++|+++..+.+.+++ |+..+-. -++.++....++.++...++. .+.+
T Consensus 139 LLk~LE-------------epp~~~~fIlattd~~kl~~tI~S--Rc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al 203 (509)
T PRK14958 139 LLKTLE-------------EPPSHVKFILATTDHHKLPVTVLS--RCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAAL 203 (509)
T ss_pred HHHHHh-------------ccCCCeEEEEEECChHhchHHHHH--HhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 666555 455678888888999999999988 7744433 356777777777777665554 4445
Q ss_pred HHHHccCCc
Q 013704 332 VKLVDTFPG 340 (438)
Q Consensus 332 a~l~~~~sg 340 (438)
..++....|
T Consensus 204 ~~ia~~s~G 212 (509)
T PRK14958 204 DLLARAANG 212 (509)
T ss_pred HHHHHHcCC
Confidence 555555444
No 98
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.29 E-value=8.4e-11 Score=128.00 Aligned_cols=150 Identities=13% Similarity=0.185 Sum_probs=101.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCce------------------------EEEeccccccCCCCChHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINP------------------------IMMSAGELESGNAGEPAKLIRQRYR 212 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~------------------------i~vs~~~l~s~~~Ge~~~~ir~~f~ 212 (438)
+.|..+||+||||||||++|+++|+.+++.- +.+++. .......+|++++
T Consensus 36 rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaA------s~~gVd~IRelle 109 (709)
T PRK08691 36 RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAA------SNTGIDNIREVLE 109 (709)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEecc------ccCCHHHHHHHHH
Confidence 5678999999999999999999999976531 112111 1122346777776
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCC
Q 013704 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (438)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld 292 (438)
.+...-...+..|+||||+|.+.. ...+.|+..++ +...++.+|++||++..+.
T Consensus 110 ~a~~~P~~gk~KVIIIDEad~Ls~-------------~A~NALLKtLE-------------EPp~~v~fILaTtd~~kL~ 163 (709)
T PRK08691 110 NAQYAPTAGKYKVYIIDEVHMLSK-------------SAFNAMLKTLE-------------EPPEHVKFILATTDPHKVP 163 (709)
T ss_pred HHHhhhhhCCcEEEEEECccccCH-------------HHHHHHHHHHH-------------hCCCCcEEEEEeCCccccc
Confidence 543111134567999999987632 12244566454 4456788999999999999
Q ss_pred ccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCCCC--HHHHHHHHccCCc
Q 013704 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVP--KEDIVKLVDTFPG 340 (438)
Q Consensus 293 ~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~v~--~~~la~l~~~~sg 340 (438)
+.+++ |+-.+-. -++.++....++.++...++. .+.+..+++...|
T Consensus 164 ~TIrS--RC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G 212 (709)
T PRK08691 164 VTVLS--RCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG 212 (709)
T ss_pred hHHHH--HHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC
Confidence 99887 8744333 478888888898888876654 4455555555544
No 99
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.28 E-value=2.7e-11 Score=121.72 Aligned_cols=156 Identities=14% Similarity=0.190 Sum_probs=97.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC-----CceEEEeccccccCC-------------CCC-------hHHHHHHHHHHH
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELESGN-------------AGE-------PAKLIRQRYREA 214 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg-----~~~i~vs~~~l~s~~-------------~Ge-------~~~~ir~~f~~A 214 (438)
.+++||||||||||++|+++++++. .+++.+++.++.... .+. ....++.+.+..
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEY 116 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHH
Confidence 3699999999999999999999974 346777776543211 010 011222222222
Q ss_pred HHHHH-hCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCc
Q 013704 215 ADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 293 (438)
Q Consensus 215 ~~~~~-~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~ 293 (438)
..... ...+.+|||||+|.+... ....|..+++ .......+|++|+.+..+.+
T Consensus 117 ~~~~~~~~~~~vlilDe~~~l~~~-------------~~~~L~~~le-------------~~~~~~~~Il~~~~~~~~~~ 170 (337)
T PRK12402 117 ASYRPLSADYKTILLDNAEALRED-------------AQQALRRIME-------------QYSRTCRFIIATRQPSKLIP 170 (337)
T ss_pred HhcCCCCCCCcEEEEeCcccCCHH-------------HHHHHHHHHH-------------hccCCCeEEEEeCChhhCch
Confidence 10000 134569999999977321 1234555444 22334557777777788888
Q ss_pred cccCCCcceEEEe-cCCHHHHHHHHHhhhCCCC--CCHHHHHHHHccCCcchhH
Q 013704 294 PLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDTFPGQSID 344 (438)
Q Consensus 294 aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~--v~~~~la~l~~~~sgadi~ 344 (438)
+|.+ |+..+.. .|+.++...+++.++...+ ++.+.+..++...+ .++.
T Consensus 171 ~L~s--r~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~-gdlr 221 (337)
T PRK12402 171 PIRS--RCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAG-GDLR 221 (337)
T ss_pred hhcC--CceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHH
Confidence 8888 6644333 5889999999988876654 55667777777764 4554
No 100
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.28 E-value=1.3e-11 Score=124.10 Aligned_cols=143 Identities=15% Similarity=0.130 Sum_probs=100.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccC--CCCChHHHH----------HHHHHHHHHHHHhCCceeE
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG--NAGEPAKLI----------RQRYREAADIIKKGKMCCL 226 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~--~~Ge~~~~i----------r~~f~~A~~~~~~~~p~IL 226 (438)
.+.|||.||||||||++++.+|+.++.+++.+++....+. +.|...-.+ ...+-.| ...+++|
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A-----~~~g~il 138 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWA-----LQHNVAL 138 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhH-----HhCCeEE
Confidence 3569999999999999999999999999999988655443 455422111 1122223 2467899
Q ss_pred EeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCcccc-CCCCCceEEEecCCCC------------CCCc
Q 013704 227 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ-EENPRVPIIVTGNDFS------------TLYA 293 (438)
Q Consensus 227 fIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~-~~~~~v~VI~TTN~~~------------~Ld~ 293 (438)
++||+|..-+ .+...|..+++....+.+++.... ...+...||+|+|... .+++
T Consensus 139 llDEin~a~p-------------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~ 205 (327)
T TIGR01650 139 CFDEYDAGRP-------------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQ 205 (327)
T ss_pred EechhhccCH-------------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCH
Confidence 9999997733 234566667765445555443111 2335788999999854 4688
Q ss_pred cccCCCcceEEEe--cCCHHHHHHHHHhhh
Q 013704 294 PLIRDGRMEKFYW--APTREDRIGVCSGIF 321 (438)
Q Consensus 294 aLlR~GRfd~~i~--lP~~e~R~~Il~~~l 321 (438)
|++. ||-..+. .|+.++-.+|+....
T Consensus 206 A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 206 AQMD--RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred HHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence 9999 9977665 599999999987654
No 101
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.27 E-value=1.6e-11 Score=117.46 Aligned_cols=182 Identities=20% Similarity=0.230 Sum_probs=104.3
Q ss_pred ccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCceEEEeccccc
Q 013704 122 QYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELE 196 (438)
Q Consensus 122 ~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~l-----g~~~i~vs~~~l~ 196 (438)
+|+|+|.+.+.. .+.+.+.++.....++. ....++||||+|+|||+|..+++++. +..++++++.++.
T Consensus 4 ~~tFdnfv~g~~------N~~a~~~~~~ia~~~~~-~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~ 76 (219)
T PF00308_consen 4 KYTFDNFVVGES------NELAYAAAKAIAENPGE-RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFI 76 (219)
T ss_dssp T-SCCCS--TTT------THHHHHHHHHHHHSTTT-SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHH
T ss_pred CCccccCCcCCc------HHHHHHHHHHHHhcCCC-CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHH
Confidence 567888764421 24555666666555554 23458999999999999999999883 5678888877665
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCC
Q 013704 197 SGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 276 (438)
Q Consensus 197 s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~ 276 (438)
..+.......-..-|... -....+|+|||++.+.++. .....|..+++ .. ..
T Consensus 77 ~~~~~~~~~~~~~~~~~~-----~~~~DlL~iDDi~~l~~~~-----------~~q~~lf~l~n----------~~--~~ 128 (219)
T PF00308_consen 77 REFADALRDGEIEEFKDR-----LRSADLLIIDDIQFLAGKQ-----------RTQEELFHLFN----------RL--IE 128 (219)
T ss_dssp HHHHHHHHTTSHHHHHHH-----HCTSSEEEEETGGGGTTHH-----------HHHHHHHHHHH----------HH--HH
T ss_pred HHHHHHHHcccchhhhhh-----hhcCCEEEEecchhhcCch-----------HHHHHHHHHHH----------HH--Hh
Confidence 221100000000111111 3467899999999986431 22344444444 11 11
Q ss_pred CCceEEEecC-CCCC---CCccccCCCcceE--EEe--cCCHHHHHHHHHhhhCCC--CCCHHHHHHHHccCCc
Q 013704 277 PRVPIIVTGN-DFST---LYAPLIRDGRMEK--FYW--APTREDRIGVCSGIFRTD--NVPKEDIVKLVDTFPG 340 (438)
Q Consensus 277 ~~v~VI~TTN-~~~~---Ld~aLlR~GRfd~--~i~--lP~~e~R~~Il~~~l~~~--~v~~~~la~l~~~~sg 340 (438)
.+.++|+|++ .|.. +++.|.. ||.- .+. .|+.+.|.+|++...... .++.+.+..++..+++
T Consensus 129 ~~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~ 200 (219)
T PF00308_consen 129 SGKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR 200 (219)
T ss_dssp TTSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS
T ss_pred hCCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC
Confidence 3446676664 4444 5666777 7655 333 499999999999777654 4556667777777755
No 102
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.27 E-value=1.6e-11 Score=108.28 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=74.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEEecccccc------CCCCC--hHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES------GNAGE--PAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s------~~~Ge--~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (438)
+|||+||||||||++++.+|+.++.+++.+.++.... .|.-. ........+-.+ ...+++++|||++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a-----~~~~~il~lDEin 75 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRA-----MRKGGILVLDEIN 75 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTT-----HHEEEEEEESSCG
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccc-----ccceeEEEECCcc
Confidence 4899999999999999999999999998887754321 11100 000000000011 1268999999998
Q ss_pred ccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCC------CceEEEecCCCC----CCCccccCCCcc
Q 013704 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP------RVPIIVTGNDFS----TLYAPLIRDGRM 301 (438)
Q Consensus 233 ~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~------~v~VI~TTN~~~----~Ld~aLlR~GRf 301 (438)
..- ..+...|+.++++-......+........ +..+|+|+|..+ .++++|+| ||
T Consensus 76 ~a~-------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 76 RAP-------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp G---------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred cCC-------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 663 24566777777754333222221111112 489999999998 99999999 87
No 103
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=1.6e-10 Score=123.99 Aligned_cols=148 Identities=14% Similarity=0.174 Sum_probs=97.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC------------------------ceEEEeccccccCCCCChHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI------------------------NPIMMSAGELESGNAGEPAKLIRQRYR 212 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~------------------------~~i~vs~~~l~s~~~Ge~~~~ir~~f~ 212 (438)
+.|..+||+||||||||++|+.+|+.+.. .++.+++.. .. ....++.+.+
T Consensus 36 rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas----~~--gvd~ir~ii~ 109 (546)
T PRK14957 36 KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAAS----RT--GVEETKEILD 109 (546)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeeccc----cc--CHHHHHHHHH
Confidence 56778999999999999999999998764 222222211 11 1234556665
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCC
Q 013704 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (438)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld 292 (438)
.+...-......|+||||+|.+... ..+.|+..++ +....+.+|++|+++..+.
T Consensus 110 ~~~~~p~~g~~kViIIDEa~~ls~~-------------a~naLLK~LE-------------epp~~v~fIL~Ttd~~kil 163 (546)
T PRK14957 110 NIQYMPSQGRYKVYLIDEVHMLSKQ-------------SFNALLKTLE-------------EPPEYVKFILATTDYHKIP 163 (546)
T ss_pred HHHhhhhcCCcEEEEEechhhccHH-------------HHHHHHHHHh-------------cCCCCceEEEEECChhhhh
Confidence 5432222456679999999887421 2345666555 4456777888888889999
Q ss_pred ccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCCC--CHHHHHHHHccC
Q 013704 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLVDTF 338 (438)
Q Consensus 293 ~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~v--~~~~la~l~~~~ 338 (438)
+.+++ |+..+.. -++.++....++.++...++ +.+.+..++...
T Consensus 164 ~tI~S--Rc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s 210 (546)
T PRK14957 164 VTILS--RCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHA 210 (546)
T ss_pred hhHHH--heeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 88888 7744444 47788888888877766554 444455555444
No 104
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.26 E-value=9e-11 Score=129.04 Aligned_cols=152 Identities=14% Similarity=0.185 Sum_probs=94.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEEeccccccCC----------------CC-ChHHHHHHHHH
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESGN----------------AG-EPAKLIRQRYR 212 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~l----------g~~~i~vs~~~l~s~~----------------~G-e~~~~ir~~f~ 212 (438)
..|+|+|+||||||.+++.+.+++ .+.+++++|..+...+ .| .....+..+|.
T Consensus 782 nvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~ 861 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFN 861 (1164)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHh
Confidence 445799999999999999998875 2556888885433211 01 12234444454
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCC---CC
Q 013704 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND---FS 289 (438)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~---~~ 289 (438)
... -......||+|||||.+..+. + ..|++|++ |......++.||+++|. ++
T Consensus 862 ~L~--k~~r~v~IIILDEID~L~kK~----------Q---DVLYnLFR----------~~~~s~SKLiLIGISNdlDLpe 916 (1164)
T PTZ00112 862 QNK--KDNRNVSILIIDEIDYLITKT----------Q---KVLFTLFD----------WPTKINSKLVLIAISNTMDLPE 916 (1164)
T ss_pred hhh--cccccceEEEeehHhhhCccH----------H---HHHHHHHH----------HhhccCCeEEEEEecCchhcch
Confidence 321 013346799999999997541 1 33555555 33334567899999986 55
Q ss_pred CCCccccCCCcceEEEe-cCCHHHHHHHHHhhhCC--CCCCHHHHHHHHc
Q 013704 290 TLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRT--DNVPKEDIVKLVD 336 (438)
Q Consensus 290 ~Ld~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~--~~v~~~~la~l~~ 336 (438)
.|++.++.+.++..+.+ -++.+++.+||+..+.. .-++.+.+..+++
T Consensus 917 rLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIAr 966 (1164)
T PTZ00112 917 RLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCAR 966 (1164)
T ss_pred hhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 67788887333332333 47999999999866653 3355555444443
No 105
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=8.4e-11 Score=127.02 Aligned_cols=177 Identities=15% Similarity=0.199 Sum_probs=114.6
Q ss_pred hhhccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC-------------
Q 013704 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------------- 185 (438)
Q Consensus 119 ~~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~------------- 185 (438)
..|.-+|+.++|..++ ....++.+.. .+.+..+|||||+|||||++|+.+|+.++.
T Consensus 9 k~rP~~f~~viGq~~v---------~~~L~~~i~~--~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~ 77 (559)
T PRK05563 9 KWRPQTFEDVVGQEHI---------TKTLKNAIKQ--GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECE 77 (559)
T ss_pred HhCCCcHHhccCcHHH---------HHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccH
Confidence 3444466777765322 2222333322 245788999999999999999999999753
Q ss_pred -----------ceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHH
Q 013704 186 -----------NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNAT 254 (438)
Q Consensus 186 -----------~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~ 254 (438)
+++.+++.. +.....+|++...+...--.....|+||||+|.+... ..+.
T Consensus 78 ~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~-------------a~na 138 (559)
T PRK05563 78 ICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTG-------------AFNA 138 (559)
T ss_pred HHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH-------------HHHH
Confidence 233343321 2334567777766531111455679999999988421 2245
Q ss_pred HHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCCC--CHHHH
Q 013704 255 LMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDI 331 (438)
Q Consensus 255 Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~v--~~~~l 331 (438)
|+..++ +...++.+|++|+.++.|++.+++ |+..+-+ .|+.++....++.++...++ +.+.+
T Consensus 139 LLKtLE-------------epp~~~ifIlatt~~~ki~~tI~S--Rc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al 203 (559)
T PRK05563 139 LLKTLE-------------EPPAHVIFILATTEPHKIPATILS--RCQRFDFKRISVEDIVERLKYILDKEGIEYEDEAL 203 (559)
T ss_pred HHHHhc-------------CCCCCeEEEEEeCChhhCcHHHHh--HheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 565444 445677788888889999999988 7765444 47888888888888876654 45556
Q ss_pred HHHHccCCc
Q 013704 332 VKLVDTFPG 340 (438)
Q Consensus 332 a~l~~~~sg 340 (438)
..++....|
T Consensus 204 ~~ia~~s~G 212 (559)
T PRK05563 204 RLIARAAEG 212 (559)
T ss_pred HHHHHHcCC
Confidence 666655544
No 106
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.25 E-value=6.1e-11 Score=120.21 Aligned_cols=150 Identities=15% Similarity=0.219 Sum_probs=99.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------eEEEeccccccCCCCChHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 212 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~------------------------~i~vs~~~l~s~~~Ge~~~~ir~~f~ 212 (438)
+.|..+|||||||+|||++|+++++.+... ++.+++.. ......++.+++
T Consensus 34 ~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~ 107 (355)
T TIGR02397 34 RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILD 107 (355)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHH
Confidence 457789999999999999999999997532 22232221 122345677777
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCC
Q 013704 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (438)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld 292 (438)
.+...--.....|++|||+|.+... ....|+..++ +....+.+|++||+++.+.
T Consensus 108 ~~~~~p~~~~~~vviidea~~l~~~-------------~~~~Ll~~le-------------~~~~~~~lIl~~~~~~~l~ 161 (355)
T TIGR02397 108 NVKYAPSSGKYKVYIIDEVHMLSKS-------------AFNALLKTLE-------------EPPEHVVFILATTEPHKIP 161 (355)
T ss_pred HHhcCcccCCceEEEEeChhhcCHH-------------HHHHHHHHHh-------------CCccceeEEEEeCCHHHHH
Confidence 6531111344569999999877321 1234555444 3345677888889999889
Q ss_pred ccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCC--CCHHHHHHHHccCCc
Q 013704 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDTFPG 340 (438)
Q Consensus 293 ~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~--v~~~~la~l~~~~sg 340 (438)
+++++ |+..+-. .|+.++..++++.++...+ ++.+.+..+++...|
T Consensus 162 ~~l~s--r~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 210 (355)
T TIGR02397 162 ATILS--RCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG 210 (355)
T ss_pred HHHHh--heeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99988 7754333 4789999999988777654 555566666655544
No 107
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.25 E-value=4.8e-11 Score=127.03 Aligned_cols=150 Identities=16% Similarity=0.190 Sum_probs=101.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCc----------------------------eEEEeccccccCCCCChHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------------------PIMMSAGELESGNAGEPAKLIR 208 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~----------------------------~i~vs~~~l~s~~~Ge~~~~ir 208 (438)
+.|..+||+||||||||++|+++|+.++.. ++.+++. .......++
T Consensus 41 ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaa------s~~~vd~Ir 114 (507)
T PRK06645 41 RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAA------SKTSVDDIR 114 (507)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeecc------CCCCHHHHH
Confidence 567899999999999999999999998652 1112111 012345677
Q ss_pred HHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCC
Q 013704 209 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 288 (438)
Q Consensus 209 ~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~ 288 (438)
.+++.+...--.....|+||||+|.+.. .....|+..++ +....+.+|++|+.+
T Consensus 115 ~iie~a~~~P~~~~~KVvIIDEa~~Ls~-------------~a~naLLk~LE-------------epp~~~vfI~aTte~ 168 (507)
T PRK06645 115 RIIESAEYKPLQGKHKIFIIDEVHMLSK-------------GAFNALLKTLE-------------EPPPHIIFIFATTEV 168 (507)
T ss_pred HHHHHHHhccccCCcEEEEEEChhhcCH-------------HHHHHHHHHHh-------------hcCCCEEEEEEeCCh
Confidence 7777663111134567999999997732 11234555444 455677888888889
Q ss_pred CCCCccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCCC--CHHHHHHHHccCCc
Q 013704 289 STLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLVDTFPG 340 (438)
Q Consensus 289 ~~Ld~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~v--~~~~la~l~~~~sg 340 (438)
+.+++++++ |+..+-. -++.++...+++.++...++ +.+.+..++....|
T Consensus 169 ~kI~~tI~S--Rc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G 221 (507)
T PRK06645 169 QKIPATIIS--RCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG 221 (507)
T ss_pred HHhhHHHHh--cceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 999999988 7744333 48899999999988876654 45555556655444
No 108
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.24 E-value=1e-10 Score=125.63 Aligned_cols=162 Identities=17% Similarity=0.215 Sum_probs=94.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEEecccc-------ccCCCCChHHHH---HHHHHHH---
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGEL-------ESGNAGEPAKLI---RQRYREA--- 214 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l----------g~~~i~vs~~~l-------~s~~~Ge~~~~i---r~~f~~A--- 214 (438)
.|..+||+||||||||++|+++.+++ +.+|+.+++... .....|....-+ ...|..+
T Consensus 85 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~ 164 (531)
T TIGR02902 85 NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIP 164 (531)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcc
Confidence 46789999999999999999998752 357888887632 111111100000 0000000
Q ss_pred ---HHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCC-ccc---------------cCC
Q 013704 215 ---ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG-MYN---------------QEE 275 (438)
Q Consensus 215 ---~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg-~~~---------------~~~ 275 (438)
...+......+|||||+|.+... .+..|+..+++.. +.+.+ .|. ...
T Consensus 165 ~~~~G~l~~a~gG~L~IdEI~~L~~~-------------~q~~LL~~Le~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (531)
T TIGR02902 165 QPKPGAVTRAHGGVLFIDEIGELHPV-------------QMNKLLKVLEDRK-VFLDSAYYNSENPNIPSHIHDIFQNGL 230 (531)
T ss_pred cccCchhhccCCcEEEEechhhCCHH-------------HHHHHHHHHHhCe-eeeccccccccCcccccchhhhcccCc
Confidence 00112445689999999988542 2345555554211 11111 111 011
Q ss_pred CCCceEE-EecCCCCCCCccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCCC--CHHHHHHHH
Q 013704 276 NPRVPII-VTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLV 335 (438)
Q Consensus 276 ~~~v~VI-~TTN~~~~Ld~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~v--~~~~la~l~ 335 (438)
..++.+| +|||.++.|++++++ |+..+.. -++.+++.+|++..+++.++ +.+.+..+.
T Consensus 231 ~~d~rlI~ATt~~p~~L~paLrs--R~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~ 292 (531)
T TIGR02902 231 PADFRLIGATTRNPEEIPPALRS--RCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIV 292 (531)
T ss_pred ccceEEEEEecCCcccCChHHhh--hhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 2334455 577899999999999 8876555 35788899999988876544 444555443
No 109
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=5.6e-11 Score=128.99 Aligned_cols=178 Identities=14% Similarity=0.202 Sum_probs=111.9
Q ss_pred hhhhccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc-----------
Q 013704 118 QGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------- 186 (438)
Q Consensus 118 ~~~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~----------- 186 (438)
...|.-+|++++|. ..++...++.+.. .+.|..+|||||+|||||++|+++|+.+++.
T Consensus 8 ~KyRP~~f~dviGQ---------e~vv~~L~~~l~~--~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~ 76 (618)
T PRK14951 8 RKYRPRSFSEMVGQ---------EHVVQALTNALTQ--QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITAT 76 (618)
T ss_pred HHHCCCCHHHhcCc---------HHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCC
Confidence 34444566777764 2223334444433 3567889999999999999999999998652
Q ss_pred ------------------eEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchh
Q 013704 187 ------------------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNN 248 (438)
Q Consensus 187 ------------------~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~ 248 (438)
++.+++.. ......+|++.+.+...-......|+||||+|.+...
T Consensus 77 pCg~C~~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~----------- 139 (618)
T PRK14951 77 PCGVCQACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT----------- 139 (618)
T ss_pred CCCccHHHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH-----------
Confidence 22222110 1123356666655421111334569999999988432
Q ss_pred HHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCCCC
Q 013704 249 QMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVP 327 (438)
Q Consensus 249 ~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~v~ 327 (438)
..+.|+..++ +....+.+|++|+++..+.+.+++ |+..+-. -++.++..+.++.++...++.
T Consensus 140 --a~NaLLKtLE-------------EPP~~~~fIL~Ttd~~kil~TIlS--Rc~~~~f~~Ls~eei~~~L~~i~~~egi~ 202 (618)
T PRK14951 140 --AFNAMLKTLE-------------EPPEYLKFVLATTDPQKVPVTVLS--RCLQFNLRPMAPETVLEHLTQVLAAENVP 202 (618)
T ss_pred --HHHHHHHhcc-------------cCCCCeEEEEEECCchhhhHHHHH--hceeeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 1234555444 555777888888899999989888 7744444 367888888888877766554
Q ss_pred --HHHHHHHHccCCc
Q 013704 328 --KEDIVKLVDTFPG 340 (438)
Q Consensus 328 --~~~la~l~~~~sg 340 (438)
.+.+..++....|
T Consensus 203 ie~~AL~~La~~s~G 217 (618)
T PRK14951 203 AEPQALRLLARAARG 217 (618)
T ss_pred CCHHHHHHHHHHcCC
Confidence 4456666655544
No 110
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=2.5e-10 Score=116.93 Aligned_cols=157 Identities=13% Similarity=0.154 Sum_probs=98.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEec-------cccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEec
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA-------GELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIN 229 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~-------~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfID 229 (438)
..|..+|||||||+|||++|+++|+.+..+...... -++ +.........++.+++.+...--...+.|||||
T Consensus 37 ~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviID 115 (367)
T PRK14970 37 HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL-DAASNNSVDDIRNLIDQVRIPPQTGKYKIYIID 115 (367)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe-ccccCCCHHHHHHHHHHHhhccccCCcEEEEEe
Confidence 457899999999999999999999997542111000 001 011112235677777765311113456799999
Q ss_pred cccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--c
Q 013704 230 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--A 307 (438)
Q Consensus 230 EiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--l 307 (438)
|+|.+... ....|+..++ +......+|++|+.+..+.+++.+ |+.. +. .
T Consensus 116 E~~~l~~~-------------~~~~ll~~le-------------~~~~~~~~Il~~~~~~kl~~~l~s--r~~~-v~~~~ 166 (367)
T PRK14970 116 EVHMLSSA-------------AFNAFLKTLE-------------EPPAHAIFILATTEKHKIIPTILS--RCQI-FDFKR 166 (367)
T ss_pred ChhhcCHH-------------HHHHHHHHHh-------------CCCCceEEEEEeCCcccCCHHHHh--ccee-EecCC
Confidence 99877421 1234555444 334456677788888999999988 6643 44 4
Q ss_pred CCHHHHHHHHHhhhCCCC--CCHHHHHHHHccCCcchhH
Q 013704 308 PTREDRIGVCSGIFRTDN--VPKEDIVKLVDTFPGQSID 344 (438)
Q Consensus 308 P~~e~R~~Il~~~l~~~~--v~~~~la~l~~~~sgadi~ 344 (438)
|+.++...++.......+ ++.+.+..++....| |+.
T Consensus 167 ~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr 204 (367)
T PRK14970 167 ITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALR 204 (367)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHH
Confidence 788888888887776655 556666666665443 444
No 111
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.23 E-value=4.7e-12 Score=116.83 Aligned_cols=125 Identities=12% Similarity=0.131 Sum_probs=84.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC----ceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccc
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGI----NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 235 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~----~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~ 235 (438)
..+||.||+|||||.+|+++|+.+.. +++.++++++... ++.+..+..++..+..........||||||||++.
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~ 81 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAH 81 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhhcc
Confidence 57889999999999999999999997 9999999988751 11112233333322111112233499999999998
Q ss_pred cCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCC
Q 013704 236 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 290 (438)
Q Consensus 236 ~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~ 290 (438)
++. ....++....|.+.|++++++-+.. ++........++++|+|+|--..
T Consensus 82 ~~~--~~~~~v~~~~V~~~LL~~le~g~~~--d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 82 PSN--SGGADVSGEGVQNSLLQLLEGGTLT--DSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp HTT--TTCSHHHHHHHHHHHHHHHHHSEEE--ETTCCEEEGTTEEEEEEESSSTH
T ss_pred ccc--cccchhhHHHHHHHHHHHhccccee--cccceEEEeCCceEEEecccccc
Confidence 872 2445677788999999999842222 11112234588999999997654
No 112
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=1.5e-10 Score=125.31 Aligned_cols=176 Identities=9% Similarity=0.110 Sum_probs=108.1
Q ss_pred hhhhccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc-----------
Q 013704 118 QGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------- 186 (438)
Q Consensus 118 ~~~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~----------- 186 (438)
...|..+|+++++.. .+....++.+.. .+.+..+||+||||||||++|+++|+.+...
T Consensus 8 ~KyRP~sf~dIiGQe---------~v~~~L~~ai~~--~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C 76 (624)
T PRK14959 8 ARYRPQTFAEVAGQE---------TVKAILSRAAQE--NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTC 76 (624)
T ss_pred HHhCCCCHHHhcCCH---------HHHHHHHHHHHc--CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCccc
Confidence 334445667776642 122333333332 2456789999999999999999999998653
Q ss_pred -------------eEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHH
Q 013704 187 -------------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 253 (438)
Q Consensus 187 -------------~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~ 253 (438)
++.+++.. ...-..+|.+.+.....-......||||||+|.+... ..+
T Consensus 77 ~sC~~i~~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~-------------a~n 137 (624)
T PRK14959 77 EQCRKVTQGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTRE-------------AFN 137 (624)
T ss_pred HHHHHHhcCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHH-------------HHH
Confidence 23332211 0112334443332221111456679999999988421 234
Q ss_pred HHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCC--CCHHH
Q 013704 254 TLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKED 330 (438)
Q Consensus 254 ~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~--v~~~~ 330 (438)
.|+..++ +...++.+|++||.+..+.+.|++ |+..+-. -++.++...+++.++...+ ++.+.
T Consensus 138 aLLk~LE-------------EP~~~~ifILaTt~~~kll~TI~S--Rcq~i~F~pLs~~eL~~~L~~il~~egi~id~ea 202 (624)
T PRK14959 138 ALLKTLE-------------EPPARVTFVLATTEPHKFPVTIVS--RCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAA 202 (624)
T ss_pred HHHHHhh-------------ccCCCEEEEEecCChhhhhHHHHh--hhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5666444 445678888999999999988888 7754333 3678888888887776654 55555
Q ss_pred HHHHHccC
Q 013704 331 IVKLVDTF 338 (438)
Q Consensus 331 la~l~~~~ 338 (438)
+..++...
T Consensus 203 l~lIA~~s 210 (624)
T PRK14959 203 VRLIARRA 210 (624)
T ss_pred HHHHHHHc
Confidence 55555433
No 113
>PRK05642 DNA replication initiation factor; Validated
Probab=99.21 E-value=2.7e-10 Score=110.08 Aligned_cols=174 Identities=12% Similarity=0.159 Sum_probs=104.2
Q ss_pred ccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccC
Q 013704 122 QYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG 198 (438)
Q Consensus 122 ~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~ 198 (438)
.|+|+|.+.+. ...+...++++...........++||||+|||||+|+.+++++. +..+++++..++...
T Consensus 15 ~~tfdnF~~~~-------~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~ 87 (234)
T PRK05642 15 DATFANYYPGA-------NAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR 87 (234)
T ss_pred cccccccCcCC-------hHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh
Confidence 45667766431 13344455544332222234679999999999999999999863 677888888776532
Q ss_pred CCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCC
Q 013704 199 NAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 278 (438)
Q Consensus 199 ~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~ 278 (438)
. ..+.+.. ....+|+|||++.+.++.. ....|..+++ . ....+
T Consensus 88 ~--------~~~~~~~------~~~d~LiiDDi~~~~~~~~-----------~~~~Lf~l~n----------~--~~~~g 130 (234)
T PRK05642 88 G--------PELLDNL------EQYELVCLDDLDVIAGKAD-----------WEEALFHLFN----------R--LRDSG 130 (234)
T ss_pred h--------HHHHHhh------hhCCEEEEechhhhcCChH-----------HHHHHHHHHH----------H--HHhcC
Confidence 1 1111111 1236899999998865421 1123444443 0 11223
Q ss_pred ceEEEecC-CCCC---CCccccCCCcce--EEEe--cCCHHHHHHHHHhhhCC--CCCCHHHHHHHHccCCcc
Q 013704 279 VPIIVTGN-DFST---LYAPLIRDGRME--KFYW--APTREDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQ 341 (438)
Q Consensus 279 v~VI~TTN-~~~~---Ld~aLlR~GRfd--~~i~--lP~~e~R~~Il~~~l~~--~~v~~~~la~l~~~~sga 341 (438)
.++|+|++ .|.. +.+.|++ ||. ..+. .|+.++|.++++..... ..++.+.+..++..+++.
T Consensus 131 ~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d 201 (234)
T PRK05642 131 RRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRS 201 (234)
T ss_pred CEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC
Confidence 44555554 3433 3678888 774 3443 48999999999844433 356667777777777653
No 114
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.21 E-value=5.8e-11 Score=119.12 Aligned_cols=123 Identities=20% Similarity=0.252 Sum_probs=87.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCc---eEEEeccccccCCCCChHHHHHHHHHHHHHHHH-hCCceeEEeccccccc
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGIN---PIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGA 235 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~---~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~-~~~p~ILfIDEiD~l~ 235 (438)
..++||||||||||+||+.|++....+ |+.+++..-. -.-+|.+|+.+..... ..+..|||||||+.+-
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~-------t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN 235 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAK-------TNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN 235 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccc-------hHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh
Confidence 468999999999999999999987665 7777765322 4568999998864333 6778999999998774
Q ss_pred cCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEec--CCCCCCCccccCCCcceEEEec-CCHHH
Q 013704 236 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYWA-PTRED 312 (438)
Q Consensus 236 ~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TT--N~~~~Ld~aLlR~GRfd~~i~l-P~~e~ 312 (438)
.. | +.+|+-. .+.+.|.+|++| |.--.|..||+. |+-.++.. -+.++
T Consensus 236 ks-----Q--------QD~fLP~---------------VE~G~I~lIGATTENPSFqln~aLlS--RC~VfvLekL~~n~ 285 (554)
T KOG2028|consen 236 KS-----Q--------QDTFLPH---------------VENGDITLIGATTENPSFQLNAALLS--RCRVFVLEKLPVNA 285 (554)
T ss_pred hh-----h--------hhcccce---------------eccCceEEEecccCCCccchhHHHHh--ccceeEeccCCHHH
Confidence 32 1 1233331 235778888844 555689999999 87666652 45566
Q ss_pred HHHHHHh
Q 013704 313 RIGVCSG 319 (438)
Q Consensus 313 R~~Il~~ 319 (438)
-..|+.+
T Consensus 286 v~~iL~r 292 (554)
T KOG2028|consen 286 VVTILMR 292 (554)
T ss_pred HHHHHHH
Confidence 6666654
No 115
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.21 E-value=1.1e-10 Score=108.60 Aligned_cols=146 Identities=12% Similarity=0.076 Sum_probs=95.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------eEEEeccccccCCCCChHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 212 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~------------------------~i~vs~~~l~s~~~Ge~~~~ir~~f~ 212 (438)
+.|..+|||||||+|||++|+++++.+... +..+... ... -....++.+.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~--~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQS--IKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCc--CCHHHHHHHHH
Confidence 567889999999999999999999996432 1222111 000 12345666665
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCC
Q 013704 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (438)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld 292 (438)
.+...--.....|+||||+|.+... ....|+..++ +..+...+|++||.+..|.
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~~~-------------~~~~Ll~~le-------------~~~~~~~~il~~~~~~~l~ 140 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNEA-------------AANALLKTLE-------------EPPPNTLFILITPSPEKLL 140 (188)
T ss_pred HHccCcccCCeEEEEEechhhhCHH-------------HHHHHHHHhc-------------CCCCCeEEEEEECChHhCh
Confidence 5531111356679999999888432 1234555444 4455677888888889999
Q ss_pred ccccCCCcceEEEec--CCHHHHHHHHHhhhCCCCCCHHHHHHHHccCCc
Q 013704 293 APLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPG 340 (438)
Q Consensus 293 ~aLlR~GRfd~~i~l--P~~e~R~~Il~~~l~~~~v~~~~la~l~~~~sg 340 (438)
+++++ |+. .+.+ |+.++..++++.. +++.+.+..++....|
T Consensus 141 ~~i~s--r~~-~~~~~~~~~~~~~~~l~~~----gi~~~~~~~i~~~~~g 183 (188)
T TIGR00678 141 PTIRS--RCQ-VLPFPPLSEEALLQWLIRQ----GISEEAAELLLALAGG 183 (188)
T ss_pred HHHHh--hcE-EeeCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHcCC
Confidence 99998 764 4443 7888888888765 4676666665555443
No 116
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.21 E-value=4e-10 Score=108.94 Aligned_cols=145 Identities=14% Similarity=0.190 Sum_probs=89.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~ 236 (438)
..++||||||||||+|+.++|+++ |..+.+++...... ...++.+.. .+..+|+|||++.+.+
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------~~~~~~~~~------~~~dlliiDdi~~~~~ 111 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------FVPEVLEGM------EQLSLVCIDNIECIAG 111 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh--------hhHHHHHHh------hhCCEEEEeChhhhcC
Confidence 579999999999999999999875 34456666543221 111111111 1136899999998864
Q ss_pred CCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecC-CCCC---CCccccCCCcce--EEEe--cC
Q 013704 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN-DFST---LYAPLIRDGRME--KFYW--AP 308 (438)
Q Consensus 237 ~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN-~~~~---Ld~aLlR~GRfd--~~i~--lP 308 (438)
+.. .+ ..+...+..+.+ ..++.+|+||+ .|.. +.+.|++ |+. ..+. .|
T Consensus 112 ~~~--~~-----~~lf~l~n~~~e---------------~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~ 167 (235)
T PRK08084 112 DEL--WE-----MAIFDLYNRILE---------------SGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPL 167 (235)
T ss_pred CHH--HH-----HHHHHHHHHHHH---------------cCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCC
Confidence 421 11 122222222111 23445666665 4444 5788999 874 4444 48
Q ss_pred CHHHHHHHHHhhhCC--CCCCHHHHHHHHccCCcch
Q 013704 309 TREDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQS 342 (438)
Q Consensus 309 ~~e~R~~Il~~~l~~--~~v~~~~la~l~~~~sgad 342 (438)
+.++|.++++..... ..++.+.+..++.++++.-
T Consensus 168 ~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~ 203 (235)
T PRK08084 168 SDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREM 203 (235)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCH
Confidence 999999999875544 4566777888888876643
No 117
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=1.8e-10 Score=123.57 Aligned_cols=148 Identities=13% Similarity=0.181 Sum_probs=97.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------eEEEeccccccCCCCChHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 212 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~------------------------~i~vs~~~l~s~~~Ge~~~~ir~~f~ 212 (438)
+.|..+||+||||+|||++|+++|+.++.. ++.++++. ......+|++..
T Consensus 36 ~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~ 109 (527)
T PRK14969 36 RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLD 109 (527)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHH
Confidence 557789999999999999999999998652 11222110 112345676666
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCC
Q 013704 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (438)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld 292 (438)
.+...--.....|+||||+|.+... ..+.|+..++ +....+.+|++|++++.+.
T Consensus 110 ~~~~~p~~~~~kVvIIDEad~ls~~-------------a~naLLK~LE-------------epp~~~~fIL~t~d~~kil 163 (527)
T PRK14969 110 NAQYAPTRGRFKVYIIDEVHMLSKS-------------AFNAMLKTLE-------------EPPEHVKFILATTDPQKIP 163 (527)
T ss_pred HHhhCcccCCceEEEEcCcccCCHH-------------HHHHHHHHHh-------------CCCCCEEEEEEeCChhhCc
Confidence 5531111345579999999977421 1244666444 4557788888888899998
Q ss_pred ccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCCC--CHHHHHHHHccC
Q 013704 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLVDTF 338 (438)
Q Consensus 293 ~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~v--~~~~la~l~~~~ 338 (438)
+.+++ |+..+-. -|+.++-...++.++...++ +.+.+..++...
T Consensus 164 ~tI~S--Rc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s 210 (527)
T PRK14969 164 VTVLS--RCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAA 210 (527)
T ss_pred hhHHH--HHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 88887 7744333 47888888888877766555 444455544443
No 118
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=3.5e-10 Score=122.33 Aligned_cols=163 Identities=10% Similarity=0.108 Sum_probs=103.9
Q ss_pred hhccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc-------------
Q 013704 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------- 186 (438)
Q Consensus 120 ~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~------------- 186 (438)
.|.-+|+++++.. .+....++++.. .+.|..+||+||+|||||++|+++|+.++..
T Consensus 7 yRP~~f~eivGq~---------~i~~~L~~~i~~--~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~ 75 (584)
T PRK14952 7 YRPATFAEVVGQE---------HVTEPLSSALDA--GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCES 75 (584)
T ss_pred hCCCcHHHhcCcH---------HHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHH
Confidence 3444566776652 223334444443 2567789999999999999999999997642
Q ss_pred -------------eEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHH
Q 013704 187 -------------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 253 (438)
Q Consensus 187 -------------~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~ 253 (438)
++.++++.. ..-..+|++.+.+...--.....|+||||+|.+... ..+
T Consensus 76 C~~i~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~-------------A~N 136 (584)
T PRK14952 76 CVALAPNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA-------------GFN 136 (584)
T ss_pred HHHhhcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH-------------HHH
Confidence 222222110 123455555544421111345679999999988421 234
Q ss_pred HHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCCCC
Q 013704 254 TLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVP 327 (438)
Q Consensus 254 ~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~v~ 327 (438)
.|+..++ +...++.+|++|+.+..|.++|++ |...+-+ .++.++..+.++.++...++.
T Consensus 137 ALLK~LE-------------Epp~~~~fIL~tte~~kll~TI~S--Rc~~~~F~~l~~~~i~~~L~~i~~~egi~ 196 (584)
T PRK14952 137 ALLKIVE-------------EPPEHLIFIFATTEPEKVLPTIRS--RTHHYPFRLLPPRTMRALIARICEQEGVV 196 (584)
T ss_pred HHHHHHh-------------cCCCCeEEEEEeCChHhhHHHHHH--hceEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 5666454 556778888888999999999998 7644433 477888888888777765543
No 119
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=2.6e-10 Score=121.69 Aligned_cols=148 Identities=12% Similarity=0.170 Sum_probs=96.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCc-----------------------eEEEeccccccCCCCChHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------------------PIMMSAGELESGNAGEPAKLIRQRYRE 213 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~-----------------------~i~vs~~~l~s~~~Ge~~~~ir~~f~~ 213 (438)
+.|..+|||||||||||++|+++|+.+... ++.+++.. ......+|++.+.
T Consensus 34 ~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~ 107 (504)
T PRK14963 34 RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREK 107 (504)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHH
Confidence 456778999999999999999999997531 33333221 1123456665444
Q ss_pred HHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCc
Q 013704 214 AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 293 (438)
Q Consensus 214 A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~ 293 (438)
+...--...+.||||||+|.+.. .....|+..++ +....+.+|++||.+..+++
T Consensus 108 ~~~~p~~~~~kVVIIDEad~ls~-------------~a~naLLk~LE-------------ep~~~t~~Il~t~~~~kl~~ 161 (504)
T PRK14963 108 VLLAPLRGGRKVYILDEAHMMSK-------------SAFNALLKTLE-------------EPPEHVIFILATTEPEKMPP 161 (504)
T ss_pred HhhccccCCCeEEEEECccccCH-------------HHHHHHHHHHH-------------hCCCCEEEEEEcCChhhCCh
Confidence 33111135677999999986621 12234555343 44566778888899999999
Q ss_pred cccCCCcceEEEe-cCCHHHHHHHHHhhhCCCCC--CHHHHHHHHccC
Q 013704 294 PLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLVDTF 338 (438)
Q Consensus 294 aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~v--~~~~la~l~~~~ 338 (438)
.+.+ |+..+-. .|+.++....++.++...++ +.+.+..++...
T Consensus 162 ~I~S--Rc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s 207 (504)
T PRK14963 162 TILS--RTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLA 207 (504)
T ss_pred HHhc--ceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 9998 7765444 48899988888888776555 444454444443
No 120
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=9e-11 Score=127.23 Aligned_cols=178 Identities=11% Similarity=0.169 Sum_probs=112.0
Q ss_pred hhhhccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc-----------
Q 013704 118 QGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------- 186 (438)
Q Consensus 118 ~~~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~----------- 186 (438)
...|..+|+++++..++ ....++.+.. .+.|..+|||||||+|||++|+++|+.++..
T Consensus 8 ~k~RP~~f~~iiGq~~v---------~~~L~~~i~~--~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c 76 (576)
T PRK14965 8 RKYRPQTFSDLTGQEHV---------SRTLQNAIDT--GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC 76 (576)
T ss_pred HHhCCCCHHHccCcHHH---------HHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc
Confidence 33455566777765322 2223333332 2567889999999999999999999997642
Q ss_pred -------------eEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHH
Q 013704 187 -------------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 253 (438)
Q Consensus 187 -------------~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~ 253 (438)
++.+++.. ......+|++.+.+...--.....|+||||+|.+... ..+
T Consensus 77 ~~c~~i~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~-------------a~n 137 (576)
T PRK14965 77 PPCVEITEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN-------------AFN 137 (576)
T ss_pred HHHHHHhcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHH-------------HHH
Confidence 22222211 1123456666655531111334569999999977431 224
Q ss_pred HHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCCC--CHHH
Q 013704 254 TLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKED 330 (438)
Q Consensus 254 ~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~v--~~~~ 330 (438)
.|+..++ +..+++.+|++||.++.|.+.+++ |+..+-+ -++.++....++.++...++ +.+.
T Consensus 138 aLLk~LE-------------epp~~~~fIl~t~~~~kl~~tI~S--Rc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~a 202 (576)
T PRK14965 138 ALLKTLE-------------EPPPHVKFIFATTEPHKVPITILS--RCQRFDFRRIPLQKIVDRLRYIADQEGISISDAA 202 (576)
T ss_pred HHHHHHH-------------cCCCCeEEEEEeCChhhhhHHHHH--hhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHH
Confidence 5666555 556788899999999999999998 7754444 36777777778777766554 4445
Q ss_pred HHHHHccCCc
Q 013704 331 IVKLVDTFPG 340 (438)
Q Consensus 331 la~l~~~~sg 340 (438)
+..++....|
T Consensus 203 l~~la~~a~G 212 (576)
T PRK14965 203 LALVARKGDG 212 (576)
T ss_pred HHHHHHHcCC
Confidence 5555544433
No 121
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.20 E-value=3.6e-10 Score=127.46 Aligned_cols=159 Identities=14% Similarity=0.195 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhhhcCCCCCCCcE-EEEEcCCCCcHHHHHHHHHHHh---CCceEEEecccccc------------CCCCC
Q 013704 139 MDKVVVHITKNFLNLPNVKVPLI-LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES------------GNAGE 202 (438)
Q Consensus 139 ~d~~~~~i~k~~l~~~~~~~p~g-lLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s------------~~~Ge 202 (438)
++.+..++.+..........|.+ +||+||||||||.+|+++|+.+ ...++.++++++.. +|+|.
T Consensus 575 v~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~ 654 (852)
T TIGR03345 575 LEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGY 654 (852)
T ss_pred HHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccc
Confidence 33444444444333333456776 7999999999999999999998 44678888765432 24443
Q ss_pred hH-HHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceE
Q 013704 203 PA-KLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 281 (438)
Q Consensus 203 ~~-~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~V 281 (438)
.+ ..+... ++++..+||+|||+|+..+ .+...|++++++-....-.| ......+.+|
T Consensus 655 ~~~g~L~~~-------v~~~p~svvllDEieka~~-------------~v~~~Llq~ld~g~l~d~~G--r~vd~~n~ii 712 (852)
T TIGR03345 655 GEGGVLTEA-------VRRKPYSVVLLDEVEKAHP-------------DVLELFYQVFDKGVMEDGEG--REIDFKNTVI 712 (852)
T ss_pred cccchHHHH-------HHhCCCcEEEEechhhcCH-------------HHHHHHHHHhhcceeecCCC--cEEeccccEE
Confidence 21 122222 2267789999999986532 45577888887422111111 1223478999
Q ss_pred EEecCCCC-----------------------------CCCccccCCCcceEEEec-CCHHHHHHHHHhhh
Q 013704 282 IVTGNDFS-----------------------------TLYAPLIRDGRMEKFYWA-PTREDRIGVCSGIF 321 (438)
Q Consensus 282 I~TTN~~~-----------------------------~Ld~aLlR~GRfd~~i~l-P~~e~R~~Il~~~l 321 (438)
|+|||... .+.|+|+. |++.+.+. .+.++..+|+...+
T Consensus 713 I~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~iI~F~pLs~e~l~~Iv~~~L 780 (852)
T TIGR03345 713 LLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMTVIPYLPLDDDVLAAIVRLKL 780 (852)
T ss_pred EEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--ceeEEEeCCCCHHHHHHHHHHHH
Confidence 99998521 14566777 88744333 58888888887554
No 122
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=7.8e-11 Score=124.75 Aligned_cols=150 Identities=15% Similarity=0.248 Sum_probs=103.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC------------------------ceEEEeccccccCCCCChHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI------------------------NPIMMSAGELESGNAGEPAKLIRQRYR 212 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~------------------------~~i~vs~~~l~s~~~Ge~~~~ir~~f~ 212 (438)
+.|..+||+||||+|||++|+.+|+.+++ .++.+++++- .....+|.+.+
T Consensus 33 ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie 106 (491)
T PRK14964 33 KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASN------TSVDDIKVILE 106 (491)
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccC------CCHHHHHHHHH
Confidence 56889999999999999999999997642 3355554321 12355777766
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCC
Q 013704 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (438)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld 292 (438)
.+...--.....|+||||+|.+... ..+.|+..++ +..+.+.+|++|+.++.|.
T Consensus 107 ~~~~~P~~~~~KVvIIDEah~Ls~~-------------A~NaLLK~LE-------------ePp~~v~fIlatte~~Kl~ 160 (491)
T PRK14964 107 NSCYLPISSKFKVYIIDEVHMLSNS-------------AFNALLKTLE-------------EPAPHVKFILATTEVKKIP 160 (491)
T ss_pred HHHhccccCCceEEEEeChHhCCHH-------------HHHHHHHHHh-------------CCCCCeEEEEEeCChHHHH
Confidence 5531111355679999999877421 2245666444 5567788888889999999
Q ss_pred ccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCC--CCHHHHHHHHccCCc
Q 013704 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDTFPG 340 (438)
Q Consensus 293 ~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~--v~~~~la~l~~~~sg 340 (438)
+.+++ |+..+-. .++.++..+.++.++...+ ++.+.+..++....|
T Consensus 161 ~tI~S--Rc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G 209 (491)
T PRK14964 161 VTIIS--RCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG 209 (491)
T ss_pred HHHHH--hheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99998 7755444 4788888888888877655 455566666665544
No 123
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=8.5e-11 Score=120.05 Aligned_cols=143 Identities=20% Similarity=0.302 Sum_probs=106.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccc-cCCCCCh-HHHHHHHHHHHHHHHHhCCceeEEeccccccccC
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 237 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~-s~~~Ge~-~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~ 237 (438)
.++||.||.|+|||+||+.+|+-+++||..++|..|. .+|+|+. +..|.+++..|.--+++.+..|+||||+|++...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 4799999999999999999999999999999999886 4899974 5577888888865566888999999999999855
Q ss_pred CCC-CccccchhHHHHHHHHHhhcCCCccccCCccc---------cCCCCCceEEEecCCCCCCCccccCCCcceEEEe
Q 013704 238 MGG-TTQYTVNNQMVNATLMNIADNPTNVQLPGMYN---------QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 306 (438)
Q Consensus 238 r~~-~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~---------~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~ 306 (438)
..+ +...++...-|++.|+.|++ -+-|.++.--. ..+..+|.+|+.. -+..||.-+-| |.+....
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllE-GtvVnVpeK~~~~~~rgd~vqiDTtnILFiasG-AF~~Ldk~I~r--R~~d~sl 381 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLE-GTVVNVPEKGSRRKPRGDTVQIDTTNILFIASG-AFVGLDKIISR--RLDDKSL 381 (564)
T ss_pred CccccccccccchhHHHHHHHHhc-ccEEcccCCCCCCCCCCCeEEEeccceEEEecc-cccchHHHHHH--hhcchhc
Confidence 332 33457788899999999887 56666643211 1122334444433 34557777777 7776555
No 124
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.19 E-value=4.1e-10 Score=118.73 Aligned_cols=178 Identities=14% Similarity=0.185 Sum_probs=109.8
Q ss_pred hhhhccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc-----------
Q 013704 118 QGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------- 186 (438)
Q Consensus 118 ~~~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~----------- 186 (438)
...|..+|++++|...+ ....++.+.. .+.|..+|||||||+|||++|+++|+.+...
T Consensus 9 ~kyRP~~~~diiGq~~~---------v~~L~~~i~~--~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~ 77 (451)
T PRK06305 9 RKYRPQTFSEILGQDAV---------VAVLKNALRF--NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ 77 (451)
T ss_pred HHhCCCCHHHhcCcHHH---------HHHHHHHHHc--CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc
Confidence 34455566777765211 1122232221 2457889999999999999999999997542
Q ss_pred --------------eEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHH
Q 013704 187 --------------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVN 252 (438)
Q Consensus 187 --------------~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~ 252 (438)
++.+++.. .. .-..++++-+............|+||||+|.+... ..
T Consensus 78 c~~C~~i~~~~~~d~~~i~g~~----~~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~-------------~~ 138 (451)
T PRK06305 78 CASCKEISSGTSLDVLEIDGAS----HR--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKE-------------AF 138 (451)
T ss_pred cHHHHHHhcCCCCceEEeeccc----cC--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH-------------HH
Confidence 22222110 01 12344444333221111466789999999887421 23
Q ss_pred HHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCC--CCHH
Q 013704 253 ATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKE 329 (438)
Q Consensus 253 ~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~--v~~~ 329 (438)
..|+..++ +....+.+|++||.+..|.++|++ |+..+.. -++.++....++.++...+ ++.+
T Consensus 139 n~LLk~lE-------------ep~~~~~~Il~t~~~~kl~~tI~s--Rc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~ 203 (451)
T PRK06305 139 NSLLKTLE-------------EPPQHVKFFLATTEIHKIPGTILS--RCQKMHLKRIPEETIIDKLALIAKQEGIETSRE 203 (451)
T ss_pred HHHHHHhh-------------cCCCCceEEEEeCChHhcchHHHH--hceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 45666554 445677888888999999999998 7755443 4788888888887776554 5555
Q ss_pred HHHHHHccCCc
Q 013704 330 DIVKLVDTFPG 340 (438)
Q Consensus 330 ~la~l~~~~sg 340 (438)
.+..++....|
T Consensus 204 al~~L~~~s~g 214 (451)
T PRK06305 204 ALLPIARAAQG 214 (451)
T ss_pred HHHHHHHHcCC
Confidence 56666555433
No 125
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.19 E-value=2.6e-10 Score=97.02 Aligned_cols=125 Identities=18% Similarity=0.136 Sum_probs=78.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCc---eEEEeccccccC--------------CCCChHHHHHHHHHHHHHHHHhC
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMSAGELESG--------------NAGEPAKLIRQRYREAADIIKKG 221 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~---~i~vs~~~l~s~--------------~~Ge~~~~ir~~f~~A~~~~~~~ 221 (438)
+..++|+||||||||++++.+|..+... ++.+++...... ........++..+..+. ..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 77 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALAR----KL 77 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHH----hc
Confidence 4679999999999999999999998875 777777654321 22334445555666554 66
Q ss_pred CceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCC-CCCCCccccCCCc
Q 013704 222 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND-FSTLYAPLIRDGR 300 (438)
Q Consensus 222 ~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~-~~~Ld~aLlR~GR 300 (438)
.+.+|||||++.+......... ..... ...+. ......+..+|+++|. ....+..+.+ |
T Consensus 78 ~~~viiiDei~~~~~~~~~~~~--~~~~~-~~~~~---------------~~~~~~~~~~i~~~~~~~~~~~~~~~~--~ 137 (148)
T smart00382 78 KPDVLILDEITSLLDAEQEALL--LLLEE-LRLLL---------------LLKSEKNLTVILTTNDEKDLGPALLRR--R 137 (148)
T ss_pred CCCEEEEECCcccCCHHHHHHH--Hhhhh-hHHHH---------------HHHhcCCCEEEEEeCCCccCchhhhhh--c
Confidence 6899999999988654210000 00000 00000 0133567889999997 3444445555 7
Q ss_pred ceEEEec
Q 013704 301 MEKFYWA 307 (438)
Q Consensus 301 fd~~i~l 307 (438)
++..+.+
T Consensus 138 ~~~~~~~ 144 (148)
T smart00382 138 FDRRIVL 144 (148)
T ss_pred cceEEEe
Confidence 8777764
No 126
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.18 E-value=1.1e-10 Score=121.56 Aligned_cols=138 Identities=16% Similarity=0.126 Sum_probs=76.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCc-------eEEEec----cccccCCCCC--hHHHHHHHHHHHHHHHH--hCCc
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGIN-------PIMMSA----GELESGNAGE--PAKLIRQRYREAADIIK--KGKM 223 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~-------~i~vs~----~~l~s~~~Ge--~~~~ir~~f~~A~~~~~--~~~p 223 (438)
...++|+||||||||++|+.+|..+... .+.++. .++..++.-. .-......|.++...++ ...|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 4579999999999999999999987532 122221 1222222111 00111123322222222 2468
Q ss_pred eeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCC---ccccCCcccc------CCCCCceEEEecCCCC----C
Q 013704 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT---NVQLPGMYNQ------EENPRVPIIVTGNDFS----T 290 (438)
Q Consensus 224 ~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~---~v~ldg~~~~------~~~~~v~VI~TTN~~~----~ 290 (438)
++|||||++..-.. .+...++.+++.-. ...++-.|.+ ....++.||+|+|..+ .
T Consensus 274 ~vliIDEINRani~------------kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~ 341 (459)
T PRK11331 274 YVFIIDEINRANLS------------KVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAV 341 (459)
T ss_pred cEEEEehhhccCHH------------HhhhhhhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhh
Confidence 99999999876432 22233344443211 0111100100 2347899999999988 7
Q ss_pred CCccccCCCcceEEEecCCH
Q 013704 291 LYAPLIRDGRMEKFYWAPTR 310 (438)
Q Consensus 291 Ld~aLlR~GRfd~~i~lP~~ 310 (438)
+|.||+| ||..+-..|+.
T Consensus 342 lD~AlrR--RF~fi~i~p~~ 359 (459)
T PRK11331 342 VDYALRR--RFSFIDIEPGF 359 (459)
T ss_pred ccHHHHh--hhheEEecCCC
Confidence 9999999 88443224643
No 127
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.18 E-value=1.8e-10 Score=124.15 Aligned_cols=150 Identities=15% Similarity=0.207 Sum_probs=98.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC------------------------ceEEEeccccccCCCCChHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI------------------------NPIMMSAGELESGNAGEPAKLIRQRYR 212 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~------------------------~~i~vs~~~l~s~~~Ge~~~~ir~~f~ 212 (438)
+.|..+||+||||+|||++|+++|+.+.+ .++.+++.. ...-..+|.+.+
T Consensus 36 rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~ 109 (605)
T PRK05896 36 KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAAS------NNGVDEIRNIID 109 (605)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEecccc------ccCHHHHHHHHH
Confidence 56788999999999999999999999753 122222211 012334666665
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCC
Q 013704 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (438)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld 292 (438)
.+...--.....|++|||+|.+... ..+.|+..++ +....+.+|++|+.+..|.
T Consensus 110 ~~~~~P~~~~~KVIIIDEad~Lt~~-------------A~NaLLKtLE-------------EPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 110 NINYLPTTFKYKVYIIDEAHMLSTS-------------AWNALLKTLE-------------EPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred HHHhchhhCCcEEEEEechHhCCHH-------------HHHHHHHHHH-------------hCCCcEEEEEECCChHhhh
Confidence 5431111334569999999987321 2245666555 4456778888888899999
Q ss_pred ccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCC--CCHHHHHHHHccCCc
Q 013704 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDTFPG 340 (438)
Q Consensus 293 ~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~--v~~~~la~l~~~~sg 340 (438)
+++++ |+..+-. .|+.++....++..+...+ ++.+.+..++....|
T Consensus 164 ~TI~S--Rcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G 212 (605)
T PRK05896 164 LTIIS--RCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG 212 (605)
T ss_pred HHHHh--hhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99998 7754333 4788888888887776544 555655555544443
No 128
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.18 E-value=5.2e-10 Score=106.20 Aligned_cols=149 Identities=18% Similarity=0.218 Sum_probs=93.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~ 233 (438)
..+..++|+||||||||++|+++++++ +.+++++++..+.... ...+.. ...+.+|+|||+|.
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~------~~~~~lLvIDdi~~ 101 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEG------LEQADLVCLDDVEA 101 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhh------cccCCEEEEeChhh
Confidence 446789999999999999999999986 4678889888765221 122221 12346999999998
Q ss_pred cccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCC-CCCCC---ccccCCCcc--eEEEec
Q 013704 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND-FSTLY---APLIRDGRM--EKFYWA 307 (438)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~-~~~Ld---~aLlR~GRf--d~~i~l 307 (438)
+..... ....|..+++ . ....+..+|+|++. +..++ +.|.+ |+ ...+.+
T Consensus 102 l~~~~~-----------~~~~L~~~l~----------~--~~~~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l 156 (226)
T TIGR03420 102 IAGQPE-----------WQEALFHLYN----------R--VREAGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQL 156 (226)
T ss_pred hcCChH-----------HHHHHHHHHH----------H--HHHcCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEec
Confidence 754311 0122333332 0 00112356666663 33332 66777 55 356664
Q ss_pred --CCHHHHHHHHHhhhCC--CCCCHHHHHHHHccCCcchhH
Q 013704 308 --PTREDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQSID 344 (438)
Q Consensus 308 --P~~e~R~~Il~~~l~~--~~v~~~~la~l~~~~sgadi~ 344 (438)
|+.+++..+++.+... ..++.+.+..+...++|.-.+
T Consensus 157 ~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~ 197 (226)
T TIGR03420 157 PPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGS 197 (226)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHH
Confidence 6789999999876553 356677788888876664433
No 129
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.17 E-value=5e-10 Score=126.21 Aligned_cols=163 Identities=17% Similarity=0.174 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHHhhhcCCCCCCCcE-EEEEcCCCCcHHHHHHHHHHHh---CCceEEEecccccc------------CCC
Q 013704 137 AFMDKVVVHITKNFLNLPNVKVPLI-LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES------------GNA 200 (438)
Q Consensus 137 ~~~d~~~~~i~k~~l~~~~~~~p~g-lLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s------------~~~ 200 (438)
.....+..++.+..........|.+ +||+||||||||++|+++|+.+ +.+++.++++++.. +|+
T Consensus 516 ~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyv 595 (821)
T CHL00095 516 EAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYV 595 (821)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCccc
Confidence 4444555555555555544556654 7899999999999999999997 46788888776532 233
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCce
Q 013704 201 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVP 280 (438)
Q Consensus 201 Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~ 280 (438)
|-.+. ..+.+.. +....+||+|||+|++.+ .+...|++++++....--.|. .....+.+
T Consensus 596 g~~~~--~~l~~~~----~~~p~~VvllDeieka~~-------------~v~~~Llq~le~g~~~d~~g~--~v~~~~~i 654 (821)
T CHL00095 596 GYNEG--GQLTEAV----RKKPYTVVLFDEIEKAHP-------------DIFNLLLQILDDGRLTDSKGR--TIDFKNTL 654 (821)
T ss_pred CcCcc--chHHHHH----HhCCCeEEEECChhhCCH-------------HHHHHHHHHhccCceecCCCc--EEecCceE
Confidence 32111 1122222 255568999999997732 456788888884332211121 23347889
Q ss_pred EEEecCCCCC-------------------------------------CCccccCCCcceEEEec--CCHHHHHHHHHhhh
Q 013704 281 IIVTGNDFST-------------------------------------LYAPLIRDGRMEKFYWA--PTREDRIGVCSGIF 321 (438)
Q Consensus 281 VI~TTN~~~~-------------------------------------Ld~aLlR~GRfd~~i~l--P~~e~R~~Il~~~l 321 (438)
||+|||.... +.|+|+. |+|.++.+ .+.++..+|++..+
T Consensus 655 ~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~~l 732 (821)
T CHL00095 655 IIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEIML 732 (821)
T ss_pred EEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHHHH
Confidence 9999985421 2244566 88777664 57888888877554
Q ss_pred C
Q 013704 322 R 322 (438)
Q Consensus 322 ~ 322 (438)
.
T Consensus 733 ~ 733 (821)
T CHL00095 733 K 733 (821)
T ss_pred H
Confidence 3
No 130
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.17 E-value=3.7e-10 Score=121.38 Aligned_cols=158 Identities=21% Similarity=0.358 Sum_probs=99.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHH----hCCceeEEeccccccc
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK----KGKMCCLFINDLDAGA 235 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~----~~~p~ILfIDEiD~l~ 235 (438)
+.+||+||||-|||+||+.||++.|+.++.|++++=. +...++.....|..+-. ..+|.||+|||||-..
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP 400 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEecccCCc
Confidence 8999999999999999999999999999999998533 34455555555432222 4789999999998442
Q ss_pred cCCCCCccccchhHHHHHHHHHhhcCCCccccCCcccc---------CCCCCceEEEecCCCCCCCccccCCCc-ceEEE
Q 013704 236 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ---------EENPRVPIIVTGNDFSTLYAPLIRDGR-MEKFY 305 (438)
Q Consensus 236 ~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~---------~~~~~v~VI~TTN~~~~Ld~aLlR~GR-fd~~i 305 (438)
+....+++.++. -++.+.-|--.. ...-..||||.||+ |+.+-+|+=| |-.++
T Consensus 401 -------------~~~Vdvilslv~-a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd---LYaPaLR~Lr~~A~ii 463 (877)
T KOG1969|consen 401 -------------RAAVDVILSLVK-ATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND---LYAPALRPLRPFAEII 463 (877)
T ss_pred -------------HHHHHHHHHHHH-hhcchhhcCcccchhhhhhhccccccCCEEEEecC---ccchhhhhcccceEEE
Confidence 233344555444 111222222000 01124699999998 4555555443 55555
Q ss_pred ec-CCHHHH-HHHHHhhhCCC--CCCHHHHHHHHccCCc
Q 013704 306 WA-PTREDR-IGVCSGIFRTD--NVPKEDIVKLVDTFPG 340 (438)
Q Consensus 306 ~l-P~~e~R-~~Il~~~l~~~--~v~~~~la~l~~~~sg 340 (438)
.+ |..+.| .+-|+.+...+ .++...|..|++-+.+
T Consensus 464 ~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~ 502 (877)
T KOG1969|consen 464 AFVPPSQSRLVERLNEICHRENMRADSKALNALCELTQN 502 (877)
T ss_pred EecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcc
Confidence 53 444444 56666666554 4555577777776643
No 131
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.16 E-value=2.7e-10 Score=124.96 Aligned_cols=156 Identities=12% Similarity=0.219 Sum_probs=99.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEE---ecc----------ccc--cCCCCChHHHHHHHHHHHHHHHHhC
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM---SAG----------ELE--SGNAGEPAKLIRQRYREAADIIKKG 221 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~v---s~~----------~l~--s~~~Ge~~~~ir~~f~~A~~~~~~~ 221 (438)
+.+..+|||||||+|||++|+++|+.+.+.--.. .|. ++. ..-.......+|++.+.+...--..
T Consensus 38 rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g 117 (725)
T PRK07133 38 KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQS 117 (725)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcC
Confidence 5678899999999999999999999976531000 000 000 0000012445777776654221245
Q ss_pred CceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcc
Q 013704 222 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM 301 (438)
Q Consensus 222 ~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRf 301 (438)
...|+||||+|.+... ....|+..++ +....+.+|++|+.++.|++.+++ |+
T Consensus 118 ~~KV~IIDEa~~LT~~-------------A~NALLKtLE-------------EPP~~tifILaTte~~KLl~TI~S--Rc 169 (725)
T PRK07133 118 KYKIYIIDEVHMLSKS-------------AFNALLKTLE-------------EPPKHVIFILATTEVHKIPLTILS--RV 169 (725)
T ss_pred CCEEEEEEChhhCCHH-------------HHHHHHHHhh-------------cCCCceEEEEEcCChhhhhHHHHh--hc
Confidence 6679999999987421 2345666555 455677888888899999999998 88
Q ss_pred eEEEe-cCCHHHHHHHHHhhhCCCCCC--HHHHHHHHccCCc
Q 013704 302 EKFYW-APTREDRIGVCSGIFRTDNVP--KEDIVKLVDTFPG 340 (438)
Q Consensus 302 d~~i~-lP~~e~R~~Il~~~l~~~~v~--~~~la~l~~~~sg 340 (438)
..+-. .|+.++....++..+...++. .+.+..++....|
T Consensus 170 q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G 211 (725)
T PRK07133 170 QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG 211 (725)
T ss_pred eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 54433 478888888888777665554 3334444444433
No 132
>PRK06620 hypothetical protein; Validated
Probab=99.16 E-value=4.4e-10 Score=107.29 Aligned_cols=149 Identities=17% Similarity=0.175 Sum_probs=87.9
Q ss_pred HHHHHHhhhcCCCCCCC--cEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHh
Q 013704 143 VVHITKNFLNLPNVKVP--LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 220 (438)
Q Consensus 143 ~~~i~k~~l~~~~~~~p--~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~ 220 (438)
....++.+...++. .| ..++||||||||||+|++++++..+..+ ++.... ....+
T Consensus 27 a~~~~~~~~~~~~~-~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~--~~~~~~-----------~~~~~--------- 83 (214)
T PRK06620 27 AYNIIKNWQCGFGV-NPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYI--IKDIFF-----------NEEIL--------- 83 (214)
T ss_pred HHHHHHHHHHcccc-CCCcceEEEECCCCCCHHHHHHHHHhccCCEE--cchhhh-----------chhHH---------
Confidence 34444444332332 23 6799999999999999999999877532 221100 01111
Q ss_pred CCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCC--CCccccCC
Q 013704 221 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST--LYAPLIRD 298 (438)
Q Consensus 221 ~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~--Ld~aLlR~ 298 (438)
....+|+|||+|.+ + ...+..++ +.+. + .++..+|.++..|.. + ++|++
T Consensus 84 ~~~d~lliDdi~~~--------~----~~~lf~l~-N~~~-------------e-~g~~ilits~~~p~~l~l-~~L~S- 134 (214)
T PRK06620 84 EKYNAFIIEDIENW--------Q----EPALLHIF-NIIN-------------E-KQKYLLLTSSDKSRNFTL-PDLSS- 134 (214)
T ss_pred hcCCEEEEeccccc--------h----HHHHHHHH-HHHH-------------h-cCCEEEEEcCCCccccch-HHHHH-
Confidence 13478999999933 1 11222222 2111 1 234455555544443 5 77888
Q ss_pred Ccce----EEEecCCHHHHHHHHHhhhCCC--CCCHHHHHHHHccCCcchhH
Q 013704 299 GRME----KFYWAPTREDRIGVCSGIFRTD--NVPKEDIVKLVDTFPGQSID 344 (438)
Q Consensus 299 GRfd----~~i~lP~~e~R~~Il~~~l~~~--~v~~~~la~l~~~~sgadi~ 344 (438)
|+. ..+..|+.+.+.++++...... .++.+.+..++..+++.--.
T Consensus 135 -Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 135 -RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSK 185 (214)
T ss_pred -HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHH
Confidence 886 2233599999999998776643 56677778888887664333
No 133
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=1.4e-10 Score=114.60 Aligned_cols=136 Identities=19% Similarity=0.296 Sum_probs=95.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccc-cCCCCChHHHH-HHHHHHHHHHHHhCCceeEEeccccccccC
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEPAKLI-RQRYREAADIIKKGKMCCLFINDLDAGAGR 237 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~-s~~~Ge~~~~i-r~~f~~A~~~~~~~~p~ILfIDEiD~l~~~ 237 (438)
.+|||.||.|||||+||+.+|+.+++||..-++..|. .+|+|+.-.+| .++.+.|.--+.+....|++|||||+++.+
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIark 177 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARK 177 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence 5799999999999999999999999999999998875 68999876654 345554432333677889999999999876
Q ss_pred CCC-CccccchhHHHHHHHHHhhcCCCccccC--Cc-------cccCCCCCceEEEecCCCCCCCccccC
Q 013704 238 MGG-TTQYTVNNQMVNATLMNIADNPTNVQLP--GM-------YNQEENPRVPIIVTGNDFSTLYAPLIR 297 (438)
Q Consensus 238 r~~-~~~~~~~~~~v~~~Ll~Lld~~~~v~ld--g~-------~~~~~~~~v~VI~TTN~~~~Ld~aLlR 297 (438)
..+ +-..+++...|++.|+.+++ -+.++++ |- +.+....++.+||.+ .+.-|+.-+.+
T Consensus 178 SeN~SITRDVSGEGVQQALLKiiE-GTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgG-AF~GlekiI~~ 245 (408)
T COG1219 178 SENPSITRDVSGEGVQQALLKIIE-GTVASVPPQGGRKHPQQEFIQVDTSNILFICGG-AFAGLEKIIKK 245 (408)
T ss_pred CCCCCcccccCchHHHHHHHHHHc-CceeccCCCCCCCCCccceEEEcccceeEEecc-ccccHHHHHHH
Confidence 432 23356778899999999887 4444443 11 112334455566543 23445555555
No 134
>PRK08727 hypothetical protein; Validated
Probab=99.15 E-value=2.7e-10 Score=109.94 Aligned_cols=143 Identities=14% Similarity=0.093 Sum_probs=93.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH---hCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 013704 160 LILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~ 236 (438)
..++||||+|||||+|+.+++.+ .+...++++..++. ..+.+.++. .....+|+|||++.+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~------l~~~dlLiIDDi~~l~~ 107 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEA------LEGRSLVALDGLESIAG 107 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHH------HhcCCEEEEeCcccccC
Confidence 45999999999999999999877 35666777755433 122233322 23567999999998865
Q ss_pred CCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecC-CCCCC---CccccCCCcce--EEEe--cC
Q 013704 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN-DFSTL---YAPLIRDGRME--KFYW--AP 308 (438)
Q Consensus 237 ~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN-~~~~L---d~aLlR~GRfd--~~i~--lP 308 (438)
... . ...+.++.+ . ....+..||+|+| .|..+ ++.|++ ||. ..+. .|
T Consensus 108 ~~~--~---------~~~lf~l~n----------~--~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~ 162 (233)
T PRK08727 108 QRE--D---------EVALFDFHN----------R--ARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVL 162 (233)
T ss_pred ChH--H---------HHHHHHHHH----------H--HHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCC
Confidence 422 1 122333333 0 1123566888776 45544 688988 763 3344 48
Q ss_pred CHHHHHHHHHhhhC--CCCCCHHHHHHHHccCCcc
Q 013704 309 TREDRIGVCSGIFR--TDNVPKEDIVKLVDTFPGQ 341 (438)
Q Consensus 309 ~~e~R~~Il~~~l~--~~~v~~~~la~l~~~~sga 341 (438)
+.++|.+|++.... ...++.+.+..+++.++|.
T Consensus 163 ~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd 197 (233)
T PRK08727 163 DDVARAAVLRERAQRRGLALDEAAIDWLLTHGERE 197 (233)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCC
Confidence 99999999997554 3566777888888887653
No 135
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=3.9e-10 Score=119.89 Aligned_cols=150 Identities=17% Similarity=0.253 Sum_probs=95.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------eEEEeccccccCCCCChHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 212 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~------------------------~i~vs~~~l~s~~~Ge~~~~ir~~f~ 212 (438)
+.+..+|||||||+|||++|+.+|+.++.. ++.++++ .......+|.+.+
T Consensus 36 ~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaa------s~~gvd~ir~I~~ 109 (486)
T PRK14953 36 RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAA------SNRGIDDIRALRD 109 (486)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCc------cCCCHHHHHHHHH
Confidence 456788999999999999999999997631 1112111 0112334555544
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCC
Q 013704 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (438)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld 292 (438)
.+...-......|+||||+|.+... ....|+..++ +....+.+|++|+.++.++
T Consensus 110 ~~~~~P~~~~~KVvIIDEad~Lt~~-------------a~naLLk~LE-------------epp~~~v~Il~tt~~~kl~ 163 (486)
T PRK14953 110 AVSYTPIKGKYKVYIIDEAHMLTKE-------------AFNALLKTLE-------------EPPPRTIFILCTTEYDKIP 163 (486)
T ss_pred HHHhCcccCCeeEEEEEChhhcCHH-------------HHHHHHHHHh-------------cCCCCeEEEEEECCHHHHH
Confidence 4421111456679999999977421 1234555444 3445667777778888899
Q ss_pred ccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCCCC--HHHHHHHHccCCc
Q 013704 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVP--KEDIVKLVDTFPG 340 (438)
Q Consensus 293 ~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~v~--~~~la~l~~~~sg 340 (438)
+++++ |+..+.. .|+.++....++.++...++. .+.+..+++...|
T Consensus 164 ~tI~S--Rc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G 212 (486)
T PRK14953 164 PTILS--RCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG 212 (486)
T ss_pred HHHHH--hceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99988 7754333 478888888888887765554 4556655554443
No 136
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.13 E-value=8.9e-10 Score=118.99 Aligned_cols=178 Identities=13% Similarity=0.144 Sum_probs=109.6
Q ss_pred hhhhccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc-----------
Q 013704 118 QGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------- 186 (438)
Q Consensus 118 ~~~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~----------- 186 (438)
...|..+|++++|..++.. ..++.+.. .+.|..+|||||||+|||++|+++|+.+...
T Consensus 8 ~kyRP~~f~diiGqe~iv~---------~L~~~i~~--~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C 76 (563)
T PRK06647 8 TKRRPRDFNSLEGQDFVVE---------TLKHSIES--NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC 76 (563)
T ss_pred HHhCCCCHHHccCcHHHHH---------HHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc
Confidence 3444456677776522211 22222222 2467889999999999999999999997642
Q ss_pred -------------eEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHH
Q 013704 187 -------------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNA 253 (438)
Q Consensus 187 -------------~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~ 253 (438)
++.+++.. ...-..++++.+.+...--.....|+||||+|.+.. ...+
T Consensus 77 ~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~-------------~a~n 137 (563)
T PRK06647 77 SSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN-------------SAFN 137 (563)
T ss_pred hHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH-------------HHHH
Confidence 12221110 012345555554432111145667999999997732 1234
Q ss_pred HHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCCC--CHHH
Q 013704 254 TLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKED 330 (438)
Q Consensus 254 ~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~v--~~~~ 330 (438)
.|+..++ +....+.+|++|+.+..|.++|++ |+..+-+ .|+.++..+.++..+...++ +.+.
T Consensus 138 aLLK~LE-------------epp~~~vfI~~tte~~kL~~tI~S--Rc~~~~f~~l~~~el~~~L~~i~~~egi~id~eA 202 (563)
T PRK06647 138 ALLKTIE-------------EPPPYIVFIFATTEVHKLPATIKS--RCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEA 202 (563)
T ss_pred HHHHhhc-------------cCCCCEEEEEecCChHHhHHHHHH--hceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 5555444 455677888888889999999998 7765444 57888888888877765544 4555
Q ss_pred HHHHHccCCc
Q 013704 331 IVKLVDTFPG 340 (438)
Q Consensus 331 la~l~~~~sg 340 (438)
+..++....|
T Consensus 203 l~lLa~~s~G 212 (563)
T PRK06647 203 LKWIAYKSTG 212 (563)
T ss_pred HHHHHHHcCC
Confidence 5555554433
No 137
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.13 E-value=1.1e-09 Score=104.73 Aligned_cols=144 Identities=17% Similarity=0.203 Sum_probs=89.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~ 233 (438)
..+..++|+||||||||+||++++++. +.+++++++..+.. .+. . .....+|+|||+|.
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~------------~~~--~----~~~~~~liiDdi~~ 101 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL------------AFD--F----DPEAELYAVDDVER 101 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH------------HHh--h----cccCCEEEEeChhh
Confidence 345789999999999999999999985 66788888765431 111 1 23467999999997
Q ss_pred cccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC---CCCccccCCCcc--eEEEec-
Q 013704 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS---TLYAPLIRDGRM--EKFYWA- 307 (438)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~---~Ld~aLlR~GRf--d~~i~l- 307 (438)
+... .+ ..|..+++ . . .......+|.|++.+. .+.+.|.+ || ...+.+
T Consensus 102 l~~~----~~---------~~L~~~~~-----~-----~-~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~ 155 (227)
T PRK08903 102 LDDA----QQ---------IALFNLFN-----R-----V-RAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELK 155 (227)
T ss_pred cCch----HH---------HHHHHHHH-----H-----H-HHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEec
Confidence 6321 11 22333332 0 0 1122333555554322 24566666 66 345554
Q ss_pred -CCHHHHHHHHHhhhCC--CCCCHHHHHHHHccCCcchhH
Q 013704 308 -PTREDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQSID 344 (438)
Q Consensus 308 -P~~e~R~~Il~~~l~~--~~v~~~~la~l~~~~sgadi~ 344 (438)
|+.+++..+++.+... ..++.+.+..+...++|--..
T Consensus 156 pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~ 195 (227)
T PRK08903 156 PLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPS 195 (227)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHH
Confidence 6777788888876654 456677788888876665444
No 138
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.12 E-value=1.3e-09 Score=118.92 Aligned_cols=156 Identities=15% Similarity=0.200 Sum_probs=98.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEE----Eecc--------------cc--ccCCCCChHHHHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM----MSAG--------------EL--ESGNAGEPAKLIRQRYREAAD 216 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~----vs~~--------------~l--~s~~~Ge~~~~ir~~f~~A~~ 216 (438)
+.+..+|||||||+|||++|+++|+.++..... ..|+ ++ .....+.....||++.+.+..
T Consensus 36 rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~ 115 (620)
T PRK14948 36 RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQF 115 (620)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhh
Confidence 346789999999999999999999998652110 0000 00 011112334577777766531
Q ss_pred HHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCcccc
Q 013704 217 IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 296 (438)
Q Consensus 217 ~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLl 296 (438)
.--.....|+||||+|.+.. ...+.|+..++ +....+.+|++|++++.+.+.|+
T Consensus 116 ~p~~~~~KViIIDEad~Lt~-------------~a~naLLK~LE-------------ePp~~tvfIL~t~~~~~llpTIr 169 (620)
T PRK14948 116 APVQARWKVYVIDECHMLST-------------AAFNALLKTLE-------------EPPPRVVFVLATTDPQRVLPTII 169 (620)
T ss_pred ChhcCCceEEEEECccccCH-------------HHHHHHHHHHh-------------cCCcCeEEEEEeCChhhhhHHHH
Confidence 11134557999999998832 12345666444 45567788888888999999998
Q ss_pred CCCcceEEEe-cCCHHHHHHHHHhhhCCC--CCCHHHHHHHHccCCc
Q 013704 297 RDGRMEKFYW-APTREDRIGVCSGIFRTD--NVPKEDIVKLVDTFPG 340 (438)
Q Consensus 297 R~GRfd~~i~-lP~~e~R~~Il~~~l~~~--~v~~~~la~l~~~~sg 340 (438)
+ |+..+.+ -++.++-...+..+.... .++.+.+..++....|
T Consensus 170 S--Rc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G 214 (620)
T PRK14948 170 S--RCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG 214 (620)
T ss_pred h--heeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 8 7766544 466776666666655544 3455555555544444
No 139
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.11 E-value=1.1e-09 Score=109.04 Aligned_cols=149 Identities=15% Similarity=0.186 Sum_probs=93.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC-----CceEEEeccccccCCCCChHHHHHHHHHHHHHHHH--hCCceeEEeccccc
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELESGNAGEPAKLIRQRYREAADIIK--KGKMCCLFINDLDA 233 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg-----~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~--~~~p~ILfIDEiD~ 233 (438)
.++||||||||||++++++++++. .+++.+++++.. ....++..+........ ...+.+|+|||+|.
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~ 113 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADN 113 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCccc
Confidence 589999999999999999999963 234444433211 11223333322211110 13466999999988
Q ss_pred cccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe-cCCHHH
Q 013704 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRED 312 (438)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~-lP~~e~ 312 (438)
+... ....|..+++ .......+|+++|.+..+.+++.+ |+..+.. .|+.++
T Consensus 114 l~~~-------------~~~~L~~~le-------------~~~~~~~lIl~~~~~~~l~~~l~s--r~~~~~~~~l~~~e 165 (319)
T PRK00440 114 LTSD-------------AQQALRRTME-------------MYSQNTRFILSCNYSSKIIDPIQS--RCAVFRFSPLKKEA 165 (319)
T ss_pred CCHH-------------HHHHHHHHHh-------------cCCCCCeEEEEeCCccccchhHHH--HhheeeeCCCCHHH
Confidence 7421 1234555444 223456788888988888888888 6655333 478888
Q ss_pred HHHHHHhhhCCCC--CCHHHHHHHHccCCcchhH
Q 013704 313 RIGVCSGIFRTDN--VPKEDIVKLVDTFPGQSID 344 (438)
Q Consensus 313 R~~Il~~~l~~~~--v~~~~la~l~~~~sgadi~ 344 (438)
...+++.++...+ ++.+.+..++....| ++.
T Consensus 166 i~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r 198 (319)
T PRK00440 166 VAERLRYIAENEGIEITDDALEAIYYVSEG-DMR 198 (319)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Confidence 8888888776654 556677777765543 443
No 140
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.10 E-value=2.8e-09 Score=120.65 Aligned_cols=166 Identities=15% Similarity=0.166 Sum_probs=101.1
Q ss_pred hhhHHHHHHHHHHhhhcCCCCCCC-cEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccC-----CCCChHHH
Q 013704 136 PAFMDKVVVHITKNFLNLPNVKVP-LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGEPAKL 206 (438)
Q Consensus 136 ~~~~d~~~~~i~k~~l~~~~~~~p-~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~-----~~Ge~~~~ 206 (438)
+..++.+...+.+..........| ..+||+||||||||++|+++|+.+ +.+++.++++++... +.|.+...
T Consensus 571 ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~ 650 (852)
T TIGR03346 571 DEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGY 650 (852)
T ss_pred hHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCc
Confidence 344555555555443333233344 568899999999999999999986 467888888765321 12211110
Q ss_pred H----HHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEE
Q 013704 207 I----RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282 (438)
Q Consensus 207 i----r~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI 282 (438)
+ ...+..+ ++....+||||||+|++-+ .+...|++++++.... ++.-......+.+||
T Consensus 651 ~g~~~~g~l~~~---v~~~p~~vlllDeieka~~-------------~v~~~Ll~~l~~g~l~--d~~g~~vd~rn~iiI 712 (852)
T TIGR03346 651 VGYEEGGQLTEA---VRRKPYSVVLFDEVEKAHP-------------DVFNVLLQVLDDGRLT--DGQGRTVDFRNTVII 712 (852)
T ss_pred cCcccccHHHHH---HHcCCCcEEEEeccccCCH-------------HHHHHHHHHHhcCcee--cCCCeEEecCCcEEE
Confidence 0 0112222 1255567999999997732 4567788888743222 111111224678899
Q ss_pred EecCCCCC-------------------------CCccccCCCcceEEEec--CCHHHHHHHHHhhh
Q 013704 283 VTGNDFST-------------------------LYAPLIRDGRMEKFYWA--PTREDRIGVCSGIF 321 (438)
Q Consensus 283 ~TTN~~~~-------------------------Ld~aLlR~GRfd~~i~l--P~~e~R~~Il~~~l 321 (438)
+|||.... +.|.|+. |+|.++.+ ++.++...|+...+
T Consensus 713 ~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L 776 (852)
T TIGR03346 713 MTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQL 776 (852)
T ss_pred EeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHH
Confidence 99997322 3456666 99887773 68888888887544
No 141
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.09 E-value=3e-09 Score=115.51 Aligned_cols=156 Identities=12% Similarity=0.145 Sum_probs=99.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEe-------c--------------cccccCC--CCChHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS-------A--------------GELESGN--AGEPAKLIRQRYRE 213 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs-------~--------------~~l~s~~--~Ge~~~~ir~~f~~ 213 (438)
+.|..+||+||+|+|||++|+++|+.+++...... | .++..-. -...-..||++.+.
T Consensus 44 ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~ 123 (598)
T PRK09111 44 RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIES 123 (598)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHH
Confidence 56889999999999999999999999865421111 0 0000000 00123456777665
Q ss_pred HHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCc
Q 013704 214 AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 293 (438)
Q Consensus 214 A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~ 293 (438)
+...--.....|+||||+|.+... ..+.|+..++ +....+.+|++|+.++.+.+
T Consensus 124 ~~~~P~~a~~KVvIIDEad~Ls~~-------------a~naLLKtLE-------------ePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 124 VRYRPVSARYKVYIIDEVHMLSTA-------------AFNALLKTLE-------------EPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred HHhchhcCCcEEEEEEChHhCCHH-------------HHHHHHHHHH-------------hCCCCeEEEEEeCChhhhhH
Confidence 531111345679999999888421 2245555444 45567788888888888988
Q ss_pred cccCCCcceEEEe-cCCHHHHHHHHHhhhCCCCC--CHHHHHHHHccCCc
Q 013704 294 PLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLVDTFPG 340 (438)
Q Consensus 294 aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~v--~~~~la~l~~~~sg 340 (438)
.+++ |+..+-. .|+.++....++.++...++ +.+.+..++....|
T Consensus 178 tI~S--Rcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G 225 (598)
T PRK09111 178 TVLS--RCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG 225 (598)
T ss_pred HHHh--heeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 8988 7754333 48888888888888776544 44555555544433
No 142
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=4.4e-09 Score=114.46 Aligned_cols=178 Identities=13% Similarity=0.167 Sum_probs=106.8
Q ss_pred hhhhccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCce----------
Q 013704 118 QGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINP---------- 187 (438)
Q Consensus 118 ~~~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~---------- 187 (438)
...|..+|++++|..++ ....++.+.. .+.+..+|||||||+|||++|+++|+.+++..
T Consensus 8 ~kyRP~~~~eiiGq~~~---------~~~L~~~i~~--~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~ 76 (585)
T PRK14950 8 RKWRSQTFAELVGQEHV---------VQTLRNAIAE--GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGT 76 (585)
T ss_pred HHhCCCCHHHhcCCHHH---------HHHHHHHHHh--CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 34455566777765221 2222333322 24567889999999999999999999976421
Q ss_pred ---------------EEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHH
Q 013704 188 ---------------IMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVN 252 (438)
Q Consensus 188 ---------------i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~ 252 (438)
+.++.. ..-....+|++.+.+...-......|+||||+|.+... ..
T Consensus 77 c~~c~~i~~~~~~d~~~i~~~------~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~-------------a~ 137 (585)
T PRK14950 77 CEMCRAIAEGSAVDVIEMDAA------SHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTA-------------AF 137 (585)
T ss_pred CHHHHHHhcCCCCeEEEEecc------ccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHH-------------HH
Confidence 111111 01123345555443321101345679999999977421 12
Q ss_pred HHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCC--CCHH
Q 013704 253 ATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKE 329 (438)
Q Consensus 253 ~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~--v~~~ 329 (438)
+.|+..++ +....+.+|++|+..+.+.+.+++ |+..+.. .++..+...+++.++...+ ++.+
T Consensus 138 naLLk~LE-------------epp~~tv~Il~t~~~~kll~tI~S--R~~~i~f~~l~~~el~~~L~~~a~~egl~i~~e 202 (585)
T PRK14950 138 NALLKTLE-------------EPPPHAIFILATTEVHKVPATILS--RCQRFDFHRHSVADMAAHLRKIAAAEGINLEPG 202 (585)
T ss_pred HHHHHHHh-------------cCCCCeEEEEEeCChhhhhHHHHh--ccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 34555444 344567788888888888888887 7655433 3778888888877766544 5555
Q ss_pred HHHHHHccCCc
Q 013704 330 DIVKLVDTFPG 340 (438)
Q Consensus 330 ~la~l~~~~sg 340 (438)
.+..++....|
T Consensus 203 al~~La~~s~G 213 (585)
T PRK14950 203 ALEAIARAATG 213 (585)
T ss_pred HHHHHHHHcCC
Confidence 56666655544
No 143
>PRK08116 hypothetical protein; Validated
Probab=99.08 E-value=7.8e-10 Score=109.09 Aligned_cols=135 Identities=22% Similarity=0.358 Sum_probs=79.8
Q ss_pred hhhhhccccccccCCCCCChhhHHHHHHHHHHhhhcCC--CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEe
Q 013704 117 SQGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLP--NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 191 (438)
Q Consensus 117 ~~~~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~--~~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs 191 (438)
+..+++++|+|...+ +. .......++.|.... ....+.+++|||+||||||+||.+||+++ +.++++++
T Consensus 76 ~~~~~~~tFdnf~~~----~~--~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~ 149 (268)
T PRK08116 76 DEKFRNSTFENFLFD----KG--SEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN 149 (268)
T ss_pred CHHHHhcchhcccCC----hH--HHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 455666677776532 11 122334444444321 11335689999999999999999999985 78888898
Q ss_pred ccccccCCCCChHHHHHHHHHH-----HHHHHH-hCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCcc
Q 013704 192 AGELESGNAGEPAKLIRQRYRE-----AADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 265 (438)
Q Consensus 192 ~~~l~s~~~Ge~~~~ir~~f~~-----A~~~~~-~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v 265 (438)
.+++... ++..|.. ..+.++ .....+|+|||++..... ......|.++++.
T Consensus 150 ~~~ll~~--------i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~t-----------~~~~~~l~~iin~---- 206 (268)
T PRK08116 150 FPQLLNR--------IKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERDT-----------EWAREKVYNIIDS---- 206 (268)
T ss_pred HHHHHHH--------HHHHHhccccccHHHHHHHhcCCCEEEEecccCCCCC-----------HHHHHHHHHHHHH----
Confidence 8776532 2222210 001111 334679999999653211 1223456666661
Q ss_pred ccCCccccCCCCCceEEEecCCC
Q 013704 266 QLPGMYNQEENPRVPIIVTGNDF 288 (438)
Q Consensus 266 ~ldg~~~~~~~~~v~VI~TTN~~ 288 (438)
....+.++|+|||.+
T Consensus 207 --------r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 207 --------RYRKGLPTIVTTNLS 221 (268)
T ss_pred --------HHHCCCCEEEECCCC
Confidence 223567899999975
No 144
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.08 E-value=5.2e-09 Score=118.29 Aligned_cols=161 Identities=15% Similarity=0.186 Sum_probs=97.5
Q ss_pred hHHHHHHHHHHhhhcCCCCCCCc-EEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccC------------CCC
Q 013704 138 FMDKVVVHITKNFLNLPNVKVPL-ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------------NAG 201 (438)
Q Consensus 138 ~~d~~~~~i~k~~l~~~~~~~p~-glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~------------~~G 201 (438)
.++.+...+.+..........|. .+||+||||||||++|++||+.+ +.+++.++++++... |+|
T Consensus 576 ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g 655 (857)
T PRK10865 576 AVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVG 655 (857)
T ss_pred HHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccc
Confidence 34444444444332222333454 68999999999999999999986 456888888765321 122
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceE
Q 013704 202 EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 281 (438)
Q Consensus 202 e~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~V 281 (438)
... ...+..+ ++....++|||||++++-+ .+...|++++++.... ++.-......+.+|
T Consensus 656 ~~~---~g~l~~~---v~~~p~~vLllDEieka~~-------------~v~~~Ll~ile~g~l~--d~~gr~vd~rn~ii 714 (857)
T PRK10865 656 YEE---GGYLTEA---VRRRPYSVILLDEVEKAHP-------------DVFNILLQVLDDGRLT--DGQGRTVDFRNTVV 714 (857)
T ss_pred cch---hHHHHHH---HHhCCCCeEEEeehhhCCH-------------HHHHHHHHHHhhCcee--cCCceEEeecccEE
Confidence 111 0112222 1244558999999987632 3557788888742211 11111123356789
Q ss_pred EEecCCCC-------------------------CCCccccCCCcceEEEec--CCHHHHHHHHHhhh
Q 013704 282 IVTGNDFS-------------------------TLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIF 321 (438)
Q Consensus 282 I~TTN~~~-------------------------~Ld~aLlR~GRfd~~i~l--P~~e~R~~Il~~~l 321 (438)
|+|||... .+.|+|+. |+|.++.+ ++.++...|++.++
T Consensus 715 I~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L 779 (857)
T PRK10865 715 IMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQL 779 (857)
T ss_pred EEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHH
Confidence 99999731 24467777 99877763 67887788877555
No 145
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.06 E-value=8.2e-10 Score=114.70 Aligned_cols=154 Identities=15% Similarity=0.178 Sum_probs=90.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEE----------Eecccc------c-------cCCCC---ChHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM----------MSAGEL------E-------SGNAG---EPAKLIRQR 210 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~----------vs~~~l------~-------s~~~G---e~~~~ir~~ 210 (438)
+.|..+|||||||+|||++|+++|+.+...-.. -.|+.. . ..+.| .....|+++
T Consensus 36 ~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l 115 (397)
T PRK14955 36 RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLL 115 (397)
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHH
Confidence 568889999999999999999999998663100 001000 0 00111 112445554
Q ss_pred HHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCC
Q 013704 211 YREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 290 (438)
Q Consensus 211 f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~ 290 (438)
.+.+...--.....|+||||+|.+... -...|+..++ +..+...+|++|+++..
T Consensus 116 ~~~~~~~p~~~~~kvvIIdea~~l~~~-------------~~~~LLk~LE-------------ep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 116 RENVRYGPQKGRYRVYIIDEVHMLSIA-------------AFNAFLKTLE-------------EPPPHAIFIFATTELHK 169 (397)
T ss_pred HHHHhhchhcCCeEEEEEeChhhCCHH-------------HHHHHHHHHh-------------cCCCCeEEEEEeCChHH
Confidence 443320001334569999999887421 1234555444 44456677777778888
Q ss_pred CCccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCC--CCHHHHHHHHccC
Q 013704 291 LYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDTF 338 (438)
Q Consensus 291 Ld~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~--v~~~~la~l~~~~ 338 (438)
+.+++.+ |+..+-. -++.++-.+.++..++..+ ++.+.+..++...
T Consensus 170 l~~tl~s--R~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s 218 (397)
T PRK14955 170 IPATIAS--RCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKA 218 (397)
T ss_pred hHHHHHH--HHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 9888888 6643222 3677777777777765544 5555555544433
No 146
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.06 E-value=2e-09 Score=117.27 Aligned_cols=182 Identities=14% Similarity=0.182 Sum_probs=106.8
Q ss_pred hhhhccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEE--------
Q 013704 118 QGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-------- 189 (438)
Q Consensus 118 ~~~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~-------- 189 (438)
...|..+|+.++|.. .+....++.+. ..+.|..+||+||||||||++|+++|+.+.+.--.
T Consensus 8 ~kyRP~~f~eivGQe---------~i~~~L~~~i~--~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~ 76 (620)
T PRK14954 8 RKYRPSKFADITAQE---------HITHTIQNSLR--MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQE 76 (620)
T ss_pred HHHCCCCHHHhcCcH---------HHHHHHHHHHH--cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccc
Confidence 344555667777652 22223344333 23678889999999999999999999998763100
Q ss_pred --Eeccc------cc-------cCCCCC---hHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHH
Q 013704 190 --MSAGE------LE-------SGNAGE---PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMV 251 (438)
Q Consensus 190 --vs~~~------l~-------s~~~Ge---~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v 251 (438)
-.|+. +. ..+.|. ....|+.+.+.....--.....|+||||+|.+... .
T Consensus 77 ~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~-------------a 143 (620)
T PRK14954 77 VTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA-------------A 143 (620)
T ss_pred cCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH-------------H
Confidence 00000 00 001111 13455555444420001345569999999887421 1
Q ss_pred HHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCC--CCH
Q 013704 252 NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPK 328 (438)
Q Consensus 252 ~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~--v~~ 328 (438)
.+.|+..++ +....+.+|++|+.+..|.+.+++ |...+-. -++.++-...++.++...+ ++.
T Consensus 144 ~naLLK~LE-------------ePp~~tv~IL~t~~~~kLl~TI~S--Rc~~vef~~l~~~ei~~~L~~i~~~egi~I~~ 208 (620)
T PRK14954 144 FNAFLKTLE-------------EPPPHAIFIFATTELHKIPATIAS--RCQRFNFKRIPLDEIQSQLQMICRAEGIQIDA 208 (620)
T ss_pred HHHHHHHHh-------------CCCCCeEEEEEeCChhhhhHHHHh--hceEEecCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 345666554 445566677777778999999988 6644333 3678877777777666544 555
Q ss_pred HHHHHHHccC
Q 013704 329 EDIVKLVDTF 338 (438)
Q Consensus 329 ~~la~l~~~~ 338 (438)
+.+..++...
T Consensus 209 eal~~La~~s 218 (620)
T PRK14954 209 DALQLIARKA 218 (620)
T ss_pred HHHHHHHHHh
Confidence 5555544443
No 147
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2e-09 Score=118.40 Aligned_cols=162 Identities=15% Similarity=0.168 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHhhhcCCCCCCCc-EEEEEcCCCCcHHHHHHHHHHHhC---CceEEEecccccc------------CCCC
Q 013704 138 FMDKVVVHITKNFLNLPNVKVPL-ILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELES------------GNAG 201 (438)
Q Consensus 138 ~~d~~~~~i~k~~l~~~~~~~p~-glLL~GPPGtGKT~lA~aIA~~lg---~~~i~vs~~~l~s------------~~~G 201 (438)
-++.+.-.+.+...++.....|. ..||.||.|+|||-||+++|..+. ..++++++|+... +|+|
T Consensus 499 AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVG 578 (786)
T COG0542 499 AVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVG 578 (786)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCce
Confidence 34445555556665666666675 566799999999999999999987 7899999987653 3555
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceE
Q 013704 202 EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 281 (438)
Q Consensus 202 e~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~V 281 (438)
-.+. ..+.+|. ++...|||+||||++.-+ .|...|++++|+-... ||.-....-.+.+|
T Consensus 579 yeeG---G~LTEaV---Rr~PySViLlDEIEKAHp-------------dV~nilLQVlDdGrLT--D~~Gr~VdFrNtiI 637 (786)
T COG0542 579 YEEG---GQLTEAV---RRKPYSVILLDEIEKAHP-------------DVFNLLLQVLDDGRLT--DGQGRTVDFRNTII 637 (786)
T ss_pred eccc---cchhHhh---hcCCCeEEEechhhhcCH-------------HHHHHHHHHhcCCeee--cCCCCEEecceeEE
Confidence 2221 1222222 266678999999997743 5778999988842222 11111233467899
Q ss_pred EEecCCCC----------------------------CCCccccCCCcceEEEec--CCHHHHHHHHHhhhC
Q 013704 282 IVTGNDFS----------------------------TLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 322 (438)
Q Consensus 282 I~TTN~~~----------------------------~Ld~aLlR~GRfd~~i~l--P~~e~R~~Il~~~l~ 322 (438)
|+|||-=. ...|+++. |+|.++.+ -+.+...+|+..++.
T Consensus 638 ImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~ 706 (786)
T COG0542 638 IMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLN 706 (786)
T ss_pred EEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHH
Confidence 99997321 14566677 99977774 477777888775553
No 148
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.06 E-value=3.8e-10 Score=114.18 Aligned_cols=144 Identities=17% Similarity=0.218 Sum_probs=92.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccc--cCCCCChHHHHH----HHHH--HHHHHHHhCCceeEEeccc
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE--SGNAGEPAKLIR----QRYR--EAADIIKKGKMCCLFINDL 231 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~--s~~~Ge~~~~ir----~~f~--~A~~~~~~~~p~ILfIDEi 231 (438)
..+||.||||||||++|+.+|+.++.+|+.+.+..-. +...|...-..+ ..|+ ..- +..... +|+++|||
T Consensus 44 ~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gp-l~~~~~-~ill~DEI 121 (329)
T COG0714 44 GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGP-LFAAVR-VILLLDEI 121 (329)
T ss_pred CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCC-cccccc-eEEEEecc
Confidence 4599999999999999999999999999998886322 223333211111 0000 000 000111 59999999
Q ss_pred cccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecC-----CCCCCCccccCCCcceEEEe
Q 013704 232 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN-----DFSTLYAPLIRDGRMEKFYW 306 (438)
Q Consensus 232 D~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN-----~~~~Ld~aLlR~GRfd~~i~ 306 (438)
+...+ .+.+.|+++++ +..+.+++...-.-.....||+|+| ....|++|+++ ||-..++
T Consensus 122 nra~p-------------~~q~aLl~~l~-e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~ 185 (329)
T COG0714 122 NRAPP-------------EVQNALLEALE-ERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIY 185 (329)
T ss_pred ccCCH-------------HHHHHHHHHHh-CcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEe
Confidence 86643 45577888776 4566666652112336677778889 67789999999 9976666
Q ss_pred --cC-CHHHHHHHHHhhh
Q 013704 307 --AP-TREDRIGVCSGIF 321 (438)
Q Consensus 307 --lP-~~e~R~~Il~~~l 321 (438)
.| ..++...++...-
T Consensus 186 v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 186 VDYPDSEEEERIILARVG 203 (329)
T ss_pred cCCCCchHHHHHHHHhCc
Confidence 47 5555555554433
No 149
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=7.1e-10 Score=115.62 Aligned_cols=139 Identities=13% Similarity=0.119 Sum_probs=98.2
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChH--HHHHHHHHHHHHHHHhCCceeEEeccc
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA--KLIRQRYREAADIIKKGKMCCLFINDL 231 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~--~~ir~~f~~A~~~~~~~~p~ILfIDEi 231 (438)
+...+-..+||+||||+|||.||..+|...+.||+.+-.++-..++ .|++ ..|+.+|+.|. +...+||++|+|
T Consensus 533 s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~-sEsaKc~~i~k~F~DAY----kS~lsiivvDdi 607 (744)
T KOG0741|consen 533 SERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGL-SESAKCAHIKKIFEDAY----KSPLSIIVVDDI 607 (744)
T ss_pred cccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCc-cHHHHHHHHHHHHHHhh----cCcceEEEEcch
Confidence 4445558999999999999999999999999999986655322221 1333 36889999998 999999999999
Q ss_pred cccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCc-cccCCCcceEEEecCCH
Q 013704 232 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA-PLIRDGRMEKFYWAPTR 310 (438)
Q Consensus 232 D~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~-aLlR~GRfd~~i~lP~~ 310 (438)
+.+..--. -+.--...+.++|+-++. -......+.+|++||.+.+.|.+ .++. .|+..+.+|+.
T Consensus 608 ErLiD~vp---IGPRfSN~vlQaL~VllK----------~~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vpnl 672 (744)
T KOG0741|consen 608 ERLLDYVP---IGPRFSNLVLQALLVLLK----------KQPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVPNL 672 (744)
T ss_pred hhhhcccc---cCchhhHHHHHHHHHHhc----------cCCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecCcc
Confidence 98864210 001112366777777776 12233457888889988776643 3666 88889988764
Q ss_pred HH
Q 013704 311 ED 312 (438)
Q Consensus 311 e~ 312 (438)
..
T Consensus 673 ~~ 674 (744)
T KOG0741|consen 673 TT 674 (744)
T ss_pred Cc
Confidence 43
No 150
>PRK12377 putative replication protein; Provisional
Probab=99.04 E-value=8.2e-10 Score=107.73 Aligned_cols=99 Identities=14% Similarity=0.173 Sum_probs=66.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCCCCChHHHHHHHHHHH---HHHHH-hCCceeEEeccc
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA---ADIIK-KGKMCCLFINDL 231 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A---~~~~~-~~~p~ILfIDEi 231 (438)
..+++|+||||||||+||.+||+++ |..+++++..++.. .++..|... .+.++ -....+|+|||+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~--------~l~~~~~~~~~~~~~l~~l~~~dLLiIDDl 172 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS--------RLHESYDNGQSGEKFLQELCKVDLLVLDEI 172 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH--------HHHHHHhccchHHHHHHHhcCCCEEEEcCC
Confidence 4689999999999999999999996 67788888776653 223222211 01111 467889999999
Q ss_pred cccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCC
Q 013704 232 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 288 (438)
Q Consensus 232 D~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~ 288 (438)
+...... -....|.++++ .......|+|+|||..
T Consensus 173 g~~~~s~-----------~~~~~l~~ii~------------~R~~~~~ptiitSNl~ 206 (248)
T PRK12377 173 GIQRETK-----------NEQVVLNQIID------------RRTASMRSVGMLTNLN 206 (248)
T ss_pred CCCCCCH-----------HHHHHHHHHHH------------HHHhcCCCEEEEcCCC
Confidence 7653221 12345666666 1234568999999975
No 151
>PHA02244 ATPase-like protein
Probab=99.04 E-value=8.6e-10 Score=112.47 Aligned_cols=136 Identities=16% Similarity=0.169 Sum_probs=82.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccC---CCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccc
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG---NAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 235 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~---~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~ 235 (438)
...+||+||||||||++|+++|..++.+|+.++...-... +...........|-+| ...+.+|+|||++.+.
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A-----~~~GgvLiLDEId~a~ 193 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEA-----FKKGGLFFIDEIDASI 193 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHH-----hhcCCEEEEeCcCcCC
Confidence 3459999999999999999999999999998874210111 1111111111122222 3457899999999774
Q ss_pred cCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCC-----------CCCCccccCCCcceEE
Q 013704 236 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-----------STLYAPLIRDGRMEKF 304 (438)
Q Consensus 236 ~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~-----------~~Ld~aLlR~GRfd~~ 304 (438)
+. +...|..++++- .+.+.|.. ....+++.+|+|+|.+ ..|+++++. ||-.+
T Consensus 194 p~-------------vq~~L~~lLd~r-~l~l~g~~-i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv~I 256 (383)
T PHA02244 194 PE-------------ALIIINSAIANK-FFDFADER-VTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFAPI 256 (383)
T ss_pred HH-------------HHHHHHHHhccC-eEEecCcE-EecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcEEe
Confidence 32 223444444421 22222221 1234788999999973 578999999 99654
Q ss_pred Ee-cCCHHHHHHHH
Q 013704 305 YW-APTREDRIGVC 317 (438)
Q Consensus 305 i~-lP~~e~R~~Il 317 (438)
.. .|+ +....|.
T Consensus 257 ~~dyp~-~~E~~i~ 269 (383)
T PHA02244 257 EFDYDE-KIEHLIS 269 (383)
T ss_pred eCCCCc-HHHHHHh
Confidence 43 476 3334444
No 152
>PRK06835 DNA replication protein DnaC; Validated
Probab=99.03 E-value=7e-10 Score=112.42 Aligned_cols=123 Identities=20% Similarity=0.188 Sum_probs=76.4
Q ss_pred ChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCCCCChHHHHHHHH
Q 013704 135 APAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRY 211 (438)
Q Consensus 135 ~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~~Ge~~~~ir~~f 211 (438)
.|+-..+-+...++.|...... ...+++||||||||||+||.+||+++ |..+++++..++...+.. ..|
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~-~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~-------~~~ 231 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDK-NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILRE-------IRF 231 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhc-cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHH-------HHh
Confidence 4444444455656666654432 23789999999999999999999995 788889998877632210 011
Q ss_pred HH---HHH-HHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCC
Q 013704 212 RE---AAD-IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND 287 (438)
Q Consensus 212 ~~---A~~-~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~ 287 (438)
.. ... +-.-....+|+|||+....... .....|.++++ . ....+.++|+|||.
T Consensus 232 ~~~~~~~~~~~~l~~~DLLIIDDlG~e~~t~-----------~~~~~Lf~iin----------~--R~~~~k~tIiTSNl 288 (329)
T PRK06835 232 NNDKELEEVYDLLINCDLLIIDDLGTEKITE-----------FSKSELFNLIN----------K--RLLRQKKMIISTNL 288 (329)
T ss_pred ccchhHHHHHHHhccCCEEEEeccCCCCCCH-----------HHHHHHHHHHH----------H--HHHCCCCEEEECCC
Confidence 10 000 0113456899999997764321 22345556555 1 12245689999997
Q ss_pred C
Q 013704 288 F 288 (438)
Q Consensus 288 ~ 288 (438)
+
T Consensus 289 ~ 289 (329)
T PRK06835 289 S 289 (329)
T ss_pred C
Confidence 4
No 153
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.02 E-value=7.3e-09 Score=113.23 Aligned_cols=162 Identities=16% Similarity=0.246 Sum_probs=94.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEEecccccc-------CCCCChHHHHHHHHHHHHHH---
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELES-------GNAGEPAKLIRQRYREAADI--- 217 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l----------g~~~i~vs~~~l~s-------~~~Ge~~~~ir~~f~~A~~~--- 217 (438)
.|..++|+||||||||++|+++++.. +.+|+.+++..+.. .+.|.... ..+..+...
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~---~~~~~a~~~l~~ 250 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHD---PIYQGARRDLAE 250 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccH---HHHHHHHHHHHH
Confidence 35679999999999999999998765 35688888765521 11221110 111111111
Q ss_pred ----------HHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCcccc-CCccc--------------
Q 013704 218 ----------IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL-PGMYN-------------- 272 (438)
Q Consensus 218 ----------~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~l-dg~~~-------------- 272 (438)
+......+|||||++.+-.. ....|+.++++-. +.+ .+.|.
T Consensus 251 ~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~-------------~Q~~Ll~~Le~~~-v~~~~~~~~~~~~~~~~~ik~~~ 316 (615)
T TIGR02903 251 TGVPEPKTGLVTDAHGGVLFIDEIGELDPL-------------LQNKLLKVLEDKR-VEFSSSYYDPDDPNVPKYIKKLF 316 (615)
T ss_pred cCCCchhcCchhhcCCCeEEEeccccCCHH-------------HHHHHHHHHhhCe-EEeecceeccCCcccchhhhhhc
Confidence 11334579999999877432 2244555554211 111 11111
Q ss_pred -cCCCCCceEEE-ecCCCCCCCccccCCCcceEEEec-CCHHHHHHHHHhhhCCCC--CCHHHHHHHHccCC
Q 013704 273 -QEENPRVPIIV-TGNDFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCSGIFRTDN--VPKEDIVKLVDTFP 339 (438)
Q Consensus 273 -~~~~~~v~VI~-TTN~~~~Ld~aLlR~GRfd~~i~l-P~~e~R~~Il~~~l~~~~--v~~~~la~l~~~~s 339 (438)
.....++.+|+ ||+.++.++++|++ ||..+... .+.+++..|++..+...+ ++.+ +..+...|+
T Consensus 317 ~~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~~i~~~pls~edi~~Il~~~a~~~~v~ls~e-al~~L~~ys 385 (615)
T TIGR02903 317 EEGAPADFVLIGATTRDPEEINPALRS--RCAEVFFEPLTPEDIALIVLNAAEKINVHLAAG-VEELIARYT 385 (615)
T ss_pred ccCccceEEEEEeccccccccCHHHHh--ceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHCC
Confidence 01123445555 66788999999998 99866553 588999999998877544 3433 444444444
No 154
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.9e-08 Score=103.47 Aligned_cols=177 Identities=19% Similarity=0.222 Sum_probs=108.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCc-----eEEEeccccccCC---------------CCChHHHHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN-----PIMMSAGELESGN---------------AGEPAKLIRQRYREAAD 216 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~-----~i~vs~~~l~s~~---------------~Ge~~~~ir~~f~~A~~ 216 (438)
..|.++++|||||||||.+++.+++++.-+ +++++|-...+.+ .|-+ ..+.|+...+
T Consensus 40 ~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~---~~~~~~~l~~ 116 (366)
T COG1474 40 ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDS---SLEILKRLYD 116 (366)
T ss_pred CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCc---hHHHHHHHHH
Confidence 456679999999999999999999996443 7889985544321 1111 1223333333
Q ss_pred HHH-hCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC---CCC
Q 013704 217 IIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS---TLY 292 (438)
Q Consensus 217 ~~~-~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~---~Ld 292 (438)
.+. .....||++||+|.+..+.+ ..|.+|+. +......++.+|+.+|..+ .+|
T Consensus 117 ~~~~~~~~~IvvLDEid~L~~~~~-------------~~LY~L~r----------~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 117 NLSKKGKTVIVILDEVDALVDKDG-------------EVLYSLLR----------APGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HHHhcCCeEEEEEcchhhhccccc-------------hHHHHHHh----------hccccceeEEEEEEeccHHHHHHhh
Confidence 333 56788999999999987632 34556555 2223357788999998874 678
Q ss_pred ccccCCCcceEEEe-cCCHHHHHHHHHhhh----CCCCCCHH---HHHHHHccCCcchhHHHHHHHHhhhhHHHHH
Q 013704 293 APLIRDGRMEKFYW-APTREDRIGVCSGIF----RTDNVPKE---DIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360 (438)
Q Consensus 293 ~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l----~~~~v~~~---~la~l~~~~sgadi~~~~al~~~~~~~air~ 360 (438)
+-+.+.-....+.+ -.+.++...|++.-. ....++.+ .++..+...+| |..+.-.+++++..-|-++
T Consensus 174 ~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~aidilr~A~eiAe~~ 248 (366)
T COG1474 174 PRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARKAIDILRRAGEIAERE 248 (366)
T ss_pred hhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHhh
Confidence 88877333333222 348889999997443 33444433 34444455554 4433224444444444333
No 155
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.00 E-value=5.6e-09 Score=111.75 Aligned_cols=150 Identities=17% Similarity=0.196 Sum_probs=96.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC------------------------ceEEEeccccccCCCCChHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI------------------------NPIMMSAGELESGNAGEPAKLIRQRYR 212 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~------------------------~~i~vs~~~l~s~~~Ge~~~~ir~~f~ 212 (438)
+.|..+|||||||+|||++|+++|+.+.. .++.+++.. . ..-..||++..
T Consensus 34 rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas----~--~gId~IRelie 107 (535)
T PRK08451 34 RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAAS----N--RGIDDIRELIE 107 (535)
T ss_pred CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecccc----c--cCHHHHHHHHH
Confidence 56788899999999999999999999732 122222111 0 01345565554
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCC
Q 013704 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (438)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld 292 (438)
.....-......|++|||+|.+.. ...+.|+..++ +....+.+|++|+++..|.
T Consensus 108 ~~~~~P~~~~~KVvIIDEad~Lt~-------------~A~NALLK~LE-------------Epp~~t~FIL~ttd~~kL~ 161 (535)
T PRK08451 108 QTKYKPSMARFKIFIIDEVHMLTK-------------EAFNALLKTLE-------------EPPSYVKFILATTDPLKLP 161 (535)
T ss_pred HHhhCcccCCeEEEEEECcccCCH-------------HHHHHHHHHHh-------------hcCCceEEEEEECChhhCc
Confidence 432000013446999999987742 12345666555 4456677888888899999
Q ss_pred ccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCCC--CHHHHHHHHccCCc
Q 013704 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLVDTFPG 340 (438)
Q Consensus 293 ~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~v--~~~~la~l~~~~sg 340 (438)
+++++ |...+.. -++.++-...++.++...++ +.+.+..++....|
T Consensus 162 ~tI~S--Rc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G 210 (535)
T PRK08451 162 ATILS--RTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG 210 (535)
T ss_pred hHHHh--hceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 99999 7654443 36788878888877776555 44556666655444
No 156
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=4.8e-09 Score=106.40 Aligned_cols=135 Identities=14% Similarity=0.151 Sum_probs=92.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------eEEEeccccccCCCCChHHHHHHHH
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRY 211 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~------------------------~i~vs~~~l~s~~~Ge~~~~ir~~f 211 (438)
.+.|..+||+||+|+|||++|+++|+.+... ++.+....- ++ .-.-..||++.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHH
Confidence 3678899999999999999999999997542 122211100 00 11245677766
Q ss_pred HHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCC
Q 013704 212 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTL 291 (438)
Q Consensus 212 ~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~L 291 (438)
+.+..........|++|||+|++... ..+.|+..++ +...++.+|.+|++++.|
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m~~~-------------aaNaLLK~LE-------------EPp~~~~fiL~t~~~~~l 149 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAMNRN-------------AANALLKSLE-------------EPSGDTVLLLISHQPSRL 149 (328)
T ss_pred HHHhhccccCCCeEEEECChhhCCHH-------------HHHHHHHHHh-------------CCCCCeEEEEEECChhhC
Confidence 55542222456678999999988432 2355666555 556788999999999999
Q ss_pred CccccCCCcceEEEe-cCCHHHHHHHHHhhh
Q 013704 292 YAPLIRDGRMEKFYW-APTREDRIGVCSGIF 321 (438)
Q Consensus 292 d~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l 321 (438)
.|.+++ |+..+.. .|+.++-.+.+....
T Consensus 150 l~TI~S--Rc~~~~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 150 LPTIKS--RCQQQACPLPSNEESLQWLQQAL 178 (328)
T ss_pred cHHHHh--hceeeeCCCcCHHHHHHHHHHhc
Confidence 999999 8877555 478888777776543
No 157
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.99 E-value=2.5e-09 Score=106.50 Aligned_cols=129 Identities=16% Similarity=0.241 Sum_probs=85.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC------------------------CceEEEeccccccCCCCChHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMG------------------------INPIMMSAGELESGNAGEPAKLIRQRYR 212 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg------------------------~~~i~vs~~~l~s~~~Ge~~~~ir~~f~ 212 (438)
+.|..+||+||||+|||++|.++|+++. -.++.+++++....- -....++++-+
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~ 99 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAE 99 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHH
Confidence 4566899999999999999999999977 456677766544211 12233333333
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCC
Q 013704 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (438)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld 292 (438)
...........-|++|||+|.+... ..+.|+..+. ++..+.++|++||+++.|-
T Consensus 100 ~~~~~~~~~~~kviiidead~mt~~-------------A~nallk~lE-------------ep~~~~~~il~~n~~~~il 153 (325)
T COG0470 100 FLSESPLEGGYKVVIIDEADKLTED-------------AANALLKTLE-------------EPPKNTRFILITNDPSKIL 153 (325)
T ss_pred HhccCCCCCCceEEEeCcHHHHhHH-------------HHHHHHHHhc-------------cCCCCeEEEEEcCChhhcc
Confidence 2210000245679999999998542 2244544333 6678899999999999999
Q ss_pred ccccCCCcceEEEecC-CHHHHHH
Q 013704 293 APLIRDGRMEKFYWAP-TREDRIG 315 (438)
Q Consensus 293 ~aLlR~GRfd~~i~lP-~~e~R~~ 315 (438)
+++++ |+..+..-| +...+..
T Consensus 154 ~tI~S--Rc~~i~f~~~~~~~~i~ 175 (325)
T COG0470 154 PTIRS--RCQRIRFKPPSRLEAIA 175 (325)
T ss_pred chhhh--cceeeecCCchHHHHHH
Confidence 99999 886655544 4444333
No 158
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.95 E-value=5.4e-09 Score=101.79 Aligned_cols=113 Identities=11% Similarity=0.237 Sum_probs=70.9
Q ss_pred HHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCCCCChHHHHHHHHHHH----HH
Q 013704 144 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA----AD 216 (438)
Q Consensus 144 ~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A----~~ 216 (438)
...++.+..... ....+++|+||||||||+|+.+||+++ |..++.++.+++... ++..|..+ ..
T Consensus 85 l~~a~~~~~~~~-~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~--------l~~~~~~~~~~~~~ 155 (244)
T PRK07952 85 LSKARQYVEEFD-GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA--------MKDTFSNSETSEEQ 155 (244)
T ss_pred HHHHHHHHHhhc-cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH--------HHHHHhhccccHHH
Confidence 444454443221 123589999999999999999999997 778888888776632 22222110 01
Q ss_pred HHH-hCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCC
Q 013704 217 IIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 288 (438)
Q Consensus 217 ~~~-~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~ 288 (438)
+++ -...++|+|||+++..... .....|.++++ + ....+.|+|+|||..
T Consensus 156 ~l~~l~~~dlLvIDDig~~~~s~-----------~~~~~l~~Ii~----------~--Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 156 LLNDLSNVDLLVIDEIGVQTESR-----------YEKVIINQIVD----------R--RSSSKRPTGMLTNSN 205 (244)
T ss_pred HHHHhccCCEEEEeCCCCCCCCH-----------HHHHHHHHHHH----------H--HHhCCCCEEEeCCCC
Confidence 111 3368899999998764211 12235555555 1 233578999999975
No 159
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.94 E-value=6.8e-10 Score=97.35 Aligned_cols=118 Identities=16% Similarity=0.194 Sum_probs=64.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEEecc-ccc-cCCCCChHHHHHHHHHHHHHHHH----hCCceeEEecccccc
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG-ELE-SGNAGEPAKLIRQRYREAADIIK----KGKMCCLFINDLDAG 234 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~-~l~-s~~~Ge~~~~ir~~f~~A~~~~~----~~~p~ILfIDEiD~l 234 (438)
++||+|+||+|||++|+++|+.++..|.++.+. ++. +...|.. +|+......+ .--..|+++|||.+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~------v~~~~~~~f~~~~GPif~~ill~DEiNra 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFP------VYDQETGEFEFRPGPIFTNILLADEINRA 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEE------EEETTTTEEEEEE-TT-SSEEEEETGGGS
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeee------eeccCCCeeEeecChhhhceeeecccccC
Confidence 489999999999999999999999999887653 222 1111110 1110000000 111249999999876
Q ss_pred ccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC-----CCCccccCCCcc
Q 013704 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGRM 301 (438)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~-----~Ld~aLlR~GRf 301 (438)
.++ +++.|++++. +..|.++|... .-.....||+|.|..+ .|++|++. ||
T Consensus 75 ppk-------------tQsAlLeam~-Er~Vt~~g~~~-~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 75 PPK-------------TQSALLEAME-ERQVTIDGQTY-PLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp -HH-------------HHHHHHHHHH-HSEEEETTEEE-E--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred CHH-------------HHHHHHHHHH-cCeEEeCCEEE-ECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 543 4477777666 56777777611 2235678888999876 68888888 76
No 160
>PRK06921 hypothetical protein; Provisional
Probab=98.93 E-value=6.1e-09 Score=102.68 Aligned_cols=105 Identities=14% Similarity=0.176 Sum_probs=62.1
Q ss_pred hhhhccccccccCCCCCChhhHHHHHHHHHHhhhcCCC---CCCCcEEEEEcCCCCcHHHHHHHHHHHh----CCceEEE
Q 013704 118 QGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPN---VKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMM 190 (438)
Q Consensus 118 ~~~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~---~~~p~glLL~GPPGtGKT~lA~aIA~~l----g~~~i~v 190 (438)
..+...+|++...+. .+..+. .+...++.|+.... .....+++|+||||||||+|+.+||+++ |..++++
T Consensus 76 ~~~~~~~F~nf~~~~--~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~ 152 (266)
T PRK06921 76 EAFRKLTFKNFKTEG--KPQAIK-DAYECAVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYF 152 (266)
T ss_pred HHHHhhhhhcCccCC--ccHHHH-HHHHHHHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEE
Confidence 344455666654432 122222 22334444543221 1235789999999999999999999984 6777888
Q ss_pred eccccccCCCCChHHHHHHHHHHHHHHHH-hCCceeEEeccccc
Q 013704 191 SAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDA 233 (438)
Q Consensus 191 s~~~l~s~~~Ge~~~~ir~~f~~A~~~~~-~~~p~ILfIDEiD~ 233 (438)
+..++.. .++..|....+.++ -....+|+|||++.
T Consensus 153 ~~~~l~~--------~l~~~~~~~~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 153 PFVEGFG--------DLKDDFDLLEAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred EHHHHHH--------HHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 8765542 22333332221222 45678999999954
No 161
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.92 E-value=5.2e-08 Score=100.81 Aligned_cols=192 Identities=21% Similarity=0.279 Sum_probs=116.7
Q ss_pred hhhccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCceEEEecc
Q 013704 119 GLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAG 193 (438)
Q Consensus 119 ~~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~l-----g~~~i~vs~~ 193 (438)
....|+|+|.+.+ |. .+....+++..-..++. .-.-++||||.|.|||+|++|++++. +..++++++.
T Consensus 80 l~~~ytFdnFv~g----~~--N~~A~aa~~~va~~~g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 80 LNPKYTFDNFVVG----PS--NRLAYAAAKAVAENPGG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCCCCchhheeeC----Cc--hHHHHHHHHHHHhccCC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 3446777776654 21 24555666666665653 33559999999999999999999994 2346666665
Q ss_pred ccccCCCCChHHHHHHHHHHHHHHHH-hCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccc
Q 013704 194 ELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN 272 (438)
Q Consensus 194 ~l~s~~~Ge~~~~ir~~f~~A~~~~~-~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~ 272 (438)
.+.. ..+..+-+...+..+ ...-.+|+|||++.+.++.. ++ .....++-.+.+
T Consensus 153 ~f~~-------~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~gk~~--~q-----eefFh~FN~l~~------------ 206 (408)
T COG0593 153 DFTN-------DFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAGKER--TQ-----EEFFHTFNALLE------------ 206 (408)
T ss_pred HHHH-------HHHHHHHhhhHHHHHHhhccCeeeechHhHhcCChh--HH-----HHHHHHHHHHHh------------
Confidence 5442 122222221111222 23567999999999987632 12 344444444333
Q ss_pred cCCCCCceEEEecC-CCCC---CCccccCCCcceEEEe----cCCHHHHHHHHHhhhCCC--CCCHHHHHHHHccCCcch
Q 013704 273 QEENPRVPIIVTGN-DFST---LYAPLIRDGRMEKFYW----APTREDRIGVCSGIFRTD--NVPKEDIVKLVDTFPGQS 342 (438)
Q Consensus 273 ~~~~~~v~VI~TTN-~~~~---Ld~aLlR~GRfd~~i~----lP~~e~R~~Il~~~l~~~--~v~~~~la~l~~~~sgad 342 (438)
..+ -||.|+. .|.. +.+.|++ ||+--+. .|+.+.|.+|++...... .++.+.+.-++.+++..=
T Consensus 207 ---~~k-qIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nv 280 (408)
T COG0593 207 ---NGK-QIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNV 280 (408)
T ss_pred ---cCC-EEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccH
Confidence 122 4566653 4444 4577888 7766444 399999999999866654 455566777777776543
Q ss_pred hHHHHHH
Q 013704 343 IDFFGAL 349 (438)
Q Consensus 343 i~~~~al 349 (438)
-++.+++
T Consensus 281 ReLegaL 287 (408)
T COG0593 281 RELEGAL 287 (408)
T ss_pred HHHHHHH
Confidence 3444444
No 162
>PRK08181 transposase; Validated
Probab=98.91 E-value=4.7e-09 Score=103.61 Aligned_cols=101 Identities=18% Similarity=0.163 Sum_probs=64.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH---hCCceEEEeccccccCCCCC-hHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESGNAGE-PAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs~~~l~s~~~Ge-~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~ 233 (438)
...+++|+||||||||+||.+++++ .|..+++++..++...+... ......+.++ +-.++.+|+|||++.
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~------~l~~~dLLIIDDlg~ 178 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIA------KLDKFDLLILDDLAY 178 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHH------HHhcCCEEEEecccc
Confidence 3467999999999999999999976 47788888887766432100 0000111111 134678999999987
Q ss_pred cccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCC
Q 013704 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 288 (438)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~ 288 (438)
+.... .....|.++++ ....+.++|+|||.+
T Consensus 179 ~~~~~-----------~~~~~Lf~lin-------------~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 179 VTKDQ-----------AETSVLFELIS-------------ARYERRSILITANQP 209 (269)
T ss_pred ccCCH-----------HHHHHHHHHHH-------------HHHhCCCEEEEcCCC
Confidence 64431 12245666665 112235899999976
No 163
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.7e-08 Score=100.85 Aligned_cols=92 Identities=23% Similarity=0.248 Sum_probs=66.6
Q ss_pred CCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEec----CCCCCCCcccc
Q 013704 221 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG----NDFSTLYAPLI 296 (438)
Q Consensus 221 ~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TT----N~~~~Ld~aLl 296 (438)
-+..|+||||||+++.+.+. ...+++...|+.-|+-|.+--+ |+ .-|-.....++.+|+++ ..|+.|-|.|.
T Consensus 249 E~~GIvFIDEIDKIa~~~~~-g~~dvSREGVQRDlLPlvEGst-V~--TKyG~VkTdHILFIasGAFh~sKPSDLiPELQ 324 (444)
T COG1220 249 EQNGIVFIDEIDKIAKRGGS-GGPDVSREGVQRDLLPLVEGST-VS--TKYGPVKTDHILFIASGAFHVAKPSDLIPELQ 324 (444)
T ss_pred HhcCeEEEehhhHHHhcCCC-CCCCcchhhhcccccccccCce-ee--ccccccccceEEEEecCceecCChhhcChhhc
Confidence 35569999999999987542 2337778888888888766221 21 11223567899999977 67888888886
Q ss_pred CCCcceEEEec--CCHHHHHHHHH
Q 013704 297 RDGRMEKFYWA--PTREDRIGVCS 318 (438)
Q Consensus 297 R~GRfd~~i~l--P~~e~R~~Il~ 318 (438)
- ||...+++ -+.++-..||.
T Consensus 325 G--RfPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 325 G--RFPIRVELDALTKEDFERILT 346 (444)
T ss_pred C--CCceEEEcccCCHHHHHHHHc
Confidence 6 99999995 67777777764
No 164
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=1.4e-08 Score=110.94 Aligned_cols=148 Identities=11% Similarity=0.140 Sum_probs=95.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCc-------------------------eEEEeccccccCCCCChHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN-------------------------PIMMSAGELESGNAGEPAKLIRQRY 211 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~-------------------------~i~vs~~~l~s~~~Ge~~~~ir~~f 211 (438)
+.|..+|||||+|+|||++|+++|+.+.+. ++.+++.. ......|+.+.
T Consensus 37 ~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li 110 (614)
T PRK14971 37 KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLI 110 (614)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEecccc------cCCHHHHHHHH
Confidence 567889999999999999999999997532 22222210 11234566666
Q ss_pred HHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCC
Q 013704 212 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTL 291 (438)
Q Consensus 212 ~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~L 291 (438)
+.+...--....-|+||||+|.+.. .....|+..++ +......+|++|+....|
T Consensus 111 ~~~~~~P~~~~~KVvIIdea~~Ls~-------------~a~naLLK~LE-------------epp~~tifIL~tt~~~kI 164 (614)
T PRK14971 111 EQVRIPPQIGKYKIYIIDEVHMLSQ-------------AAFNAFLKTLE-------------EPPSYAIFILATTEKHKI 164 (614)
T ss_pred HHHhhCcccCCcEEEEEECcccCCH-------------HHHHHHHHHHh-------------CCCCCeEEEEEeCCchhc
Confidence 5543111123455999999988832 12345666555 445566777777778899
Q ss_pred CccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCCCC--HHHHHHHHccC
Q 013704 292 YAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVP--KEDIVKLVDTF 338 (438)
Q Consensus 292 d~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~v~--~~~la~l~~~~ 338 (438)
.++|++ |+..+-. .++.++-...++.++...++. .+.+..++...
T Consensus 165 l~tI~S--Rc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s 212 (614)
T PRK14971 165 LPTILS--RCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKA 212 (614)
T ss_pred hHHHHh--hhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 999998 7755433 477888888888777666554 33455544443
No 165
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.90 E-value=9.4e-08 Score=97.84 Aligned_cols=157 Identities=15% Similarity=0.086 Sum_probs=94.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------eEEE--ec--------------cccc---cCC-C--C-----C
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN------PIMM--SA--------------GELE---SGN-A--G-----E 202 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~------~i~v--s~--------------~~l~---s~~-~--G-----e 202 (438)
.+.|..+||+||+|+|||++|+.+|+.+... .... .+ +++. ... . | -
T Consensus 42 grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I 121 (351)
T PRK09112 42 GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAI 121 (351)
T ss_pred CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccC
Confidence 3668899999999999999999999997541 0100 00 0110 000 0 0 0
Q ss_pred hHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEE
Q 013704 203 PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282 (438)
Q Consensus 203 ~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI 282 (438)
+...+|.+-+............|+||||+|.+-.. ..+.|+..++ +...+..+|
T Consensus 122 ~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~-------------aanaLLk~LE-------------Epp~~~~fi 175 (351)
T PRK09112 122 TVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN-------------AANAILKTLE-------------EPPARALFI 175 (351)
T ss_pred CHHHHHHHHHHhhhccccCCceEEEEEchhhcCHH-------------HHHHHHHHHh-------------cCCCCceEE
Confidence 12334444333221112456679999999988321 1234666555 445667778
Q ss_pred EecCCCCCCCccccCCCcceEEEe--cCCHHHHHHHHHhhhCCCCCCHHHHHHHHccCCcc
Q 013704 283 VTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQ 341 (438)
Q Consensus 283 ~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e~R~~Il~~~l~~~~v~~~~la~l~~~~sga 341 (438)
+.|+.++.+.+.+++ |+. .+. .|+.++-.++++......+++.+.+..+.....|.
T Consensus 176 Lit~~~~~llptIrS--Rc~-~i~l~pl~~~~~~~~L~~~~~~~~~~~~~~~~i~~~s~G~ 233 (351)
T PRK09112 176 LISHSSGRLLPTIRS--RCQ-PISLKPLDDDELKKALSHLGSSQGSDGEITEALLQRSKGS 233 (351)
T ss_pred EEECChhhccHHHHh--hcc-EEEecCCCHHHHHHHHHHhhcccCCCHHHHHHHHHHcCCC
Confidence 888889999999988 874 444 47888888888864433335555444444433343
No 166
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.89 E-value=9.3e-09 Score=104.42 Aligned_cols=83 Identities=19% Similarity=0.269 Sum_probs=56.6
Q ss_pred CceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCC-ccccCCccccCCCCCceEEEecCCCC-CCCccccCCC
Q 013704 222 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-NVQLPGMYNQEENPRVPIIVTGNDFS-TLYAPLIRDG 299 (438)
Q Consensus 222 ~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~-~v~ldg~~~~~~~~~v~VI~TTN~~~-~Ld~aLlR~G 299 (438)
...+|||||++.+-+ .+++.|++.+++.. .++.+|. ......++.+|+|+|..+ .++++|+.
T Consensus 128 ~~GiL~lDEInrl~~-------------~~q~~Lle~mee~~v~v~r~G~-~~~~p~rfiviAt~NP~e~~l~~aLld-- 191 (334)
T PRK13407 128 NRGYLYIDEVNLLED-------------HIVDLLLDVAQSGENVVEREGL-SIRHPARFVLVGSGNPEEGELRPQLLD-- 191 (334)
T ss_pred CCCeEEecChHhCCH-------------HHHHHHHHHHHcCCeEEEECCe-EEecCCCEEEEecCCcccCCCCHHHHh--
Confidence 346999999998743 34466777665322 2344554 112345778888888655 58999999
Q ss_pred cceEEEec--C-CHHHHHHHHHhh
Q 013704 300 RMEKFYWA--P-TREDRIGVCSGI 320 (438)
Q Consensus 300 Rfd~~i~l--P-~~e~R~~Il~~~ 320 (438)
||...+.+ | +.++|.+|++..
T Consensus 192 RF~~~v~v~~~~~~~e~~~il~~~ 215 (334)
T PRK13407 192 RFGLSVEVRSPRDVETRVEVIRRR 215 (334)
T ss_pred hcceEEEcCCCCcHHHHHHHHHHh
Confidence 99988885 3 448899999864
No 167
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.89 E-value=3e-08 Score=95.93 Aligned_cols=139 Identities=17% Similarity=0.200 Sum_probs=93.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (438)
..+...+||||++|||||++++++..+ .|+.+|.+....|.+ +-.+++..+ ....+-|||+||+.
T Consensus 49 G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~---------l~~l~~~l~---~~~~kFIlf~DDLs 116 (249)
T PF05673_consen 49 GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGD---------LPELLDLLR---DRPYKFILFCDDLS 116 (249)
T ss_pred CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhcc---------HHHHHHHHh---cCCCCEEEEecCCC
Confidence 356789999999999999999999997 477888888766652 333444321 25567899999864
Q ss_pred ccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCC--------------
Q 013704 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD-------------- 298 (438)
Q Consensus 233 ~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~-------------- 298 (438)
+...+ . --..|..+++ |. .+....+|.|.+|+|+...+++-+...
T Consensus 117 --Fe~~d------~----~yk~LKs~Le--------Gg-le~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~ 175 (249)
T PF05673_consen 117 --FEEGD------T----EYKALKSVLE--------GG-LEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTI 175 (249)
T ss_pred --CCCCc------H----HHHHHHHHhc--------Cc-cccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHH
Confidence 22111 1 1134555444 33 235578999999999987766654321
Q ss_pred -------CcceEEEec--CCHHHHHHHHHhhhCCCCCC
Q 013704 299 -------GRMEKFYWA--PTREDRIGVCSGIFRTDNVP 327 (438)
Q Consensus 299 -------GRfd~~i~l--P~~e~R~~Il~~~l~~~~v~ 327 (438)
.||...+.+ |+.++=++|++.++...+++
T Consensus 176 eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~ 213 (249)
T PF05673_consen 176 EEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLE 213 (249)
T ss_pred HHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 277777663 77777788888877654444
No 168
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.86 E-value=1.4e-08 Score=102.09 Aligned_cols=69 Identities=17% Similarity=0.310 Sum_probs=49.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCCCCChHHHHHHHHHHH--HHHHH-hCCceeEEeccc
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA--ADIIK-KGKMCCLFINDL 231 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A--~~~~~-~~~p~ILfIDEi 231 (438)
...|++||||||||||+|+.+||+++ |.++..+..+++... ++..|... .+.++ -....+|+|||+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~--------lk~~~~~~~~~~~l~~l~~~dlLiIDDi 226 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRE--------LKNSISDGSVKEKIDAVKEAPVLMLDDI 226 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHH--------HHHHHhcCcHHHHHHHhcCCCEEEEecC
Confidence 45899999999999999999999996 788888887766532 22222110 11111 456889999999
Q ss_pred ccc
Q 013704 232 DAG 234 (438)
Q Consensus 232 D~l 234 (438)
.+.
T Consensus 227 G~e 229 (306)
T PRK08939 227 GAE 229 (306)
T ss_pred CCc
Confidence 765
No 169
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.85 E-value=4.1e-08 Score=101.01 Aligned_cols=159 Identities=14% Similarity=0.149 Sum_probs=96.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceE-----------EE--e--c-----------cccc--c-CCCCC----
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPI-----------MM--S--A-----------GELE--S-GNAGE---- 202 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i-----------~v--s--~-----------~~l~--s-~~~Ge---- 202 (438)
.+.|..+||+||+|+||+++|.++|+.+-..-- .+ . + +++. . .+.+.
T Consensus 38 ~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~ 117 (365)
T PRK07471 38 GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRL 117 (365)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEecccccccccc
Confidence 367889999999999999999999999632110 00 0 0 0100 0 00010
Q ss_pred ----hHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCC
Q 013704 203 ----PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 278 (438)
Q Consensus 203 ----~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~ 278 (438)
.-..||++-+.+........+.|++|||+|.+-. ...+.|+..++ +...+
T Consensus 118 ~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~-------------~aanaLLK~LE-------------epp~~ 171 (365)
T PRK07471 118 RTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA-------------NAANALLKVLE-------------EPPAR 171 (365)
T ss_pred cccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH-------------HHHHHHHHHHh-------------cCCCC
Confidence 1233454444332112256788999999997732 22345666555 44567
Q ss_pred ceEEEecCCCCCCCccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCCCCH---HHHHHHHccCCcchhH
Q 013704 279 VPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVPK---EDIVKLVDTFPGQSID 344 (438)
Q Consensus 279 v~VI~TTN~~~~Ld~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~v~~---~~la~l~~~~sgadi~ 344 (438)
+.+|++|+.++.+.+.+++ |+..+.. .|+.++-.+++...... ... ..+..++.|.++..+.
T Consensus 172 ~~~IL~t~~~~~llpti~S--Rc~~i~l~~l~~~~i~~~L~~~~~~--~~~~~~~~l~~~s~Gsp~~Al~ 237 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRS--RCRKLRLRPLAPEDVIDALAAAGPD--LPDDPRAALAALAEGSVGRALR 237 (365)
T ss_pred eEEEEEECCchhchHHhhc--cceEEECCCCCHHHHHHHHHHhccc--CCHHHHHHHHHHcCCCHHHHHH
Confidence 7888999999999988888 8866555 47888888888765422 222 2345555555444333
No 170
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.84 E-value=1.5e-08 Score=110.19 Aligned_cols=144 Identities=13% Similarity=0.117 Sum_probs=92.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC--ceEEEeccccccCCCCChHHHHHHHHHHHH-----HHHHhCCceeEEecccc
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESGNAGEPAKLIRQRYREAA-----DIIKKGKMCCLFINDLD 232 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~--~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~-----~~~~~~~p~ILfIDEiD 232 (438)
.+|||.|+||||||++|+++++.++. +|+.+..........|.- .+...+.... ..+.+....+|||||++
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 58999999999999999999998764 577776543334444432 1111111000 00112445699999999
Q ss_pred ccccCCCCCccccchhHHHHHHHHHhhcCCCc-cccCCccccCCCCCceEEEecCCCC---CCCccccCCCcceEEEe--
Q 013704 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTN-VQLPGMYNQEENPRVPIIVTGNDFS---TLYAPLIRDGRMEKFYW-- 306 (438)
Q Consensus 233 ~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~-v~ldg~~~~~~~~~v~VI~TTN~~~---~Ld~aLlR~GRfd~~i~-- 306 (438)
.+.+ .++..|++.+++-.. +.-+|.. .....++.||+|+|..+ .|+++|+. ||...+.
T Consensus 95 rl~~-------------~~q~~Ll~al~~g~v~i~r~G~~-~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~ 158 (589)
T TIGR02031 95 LLDD-------------GLSNRLLQALDEGVVIVEREGIS-VVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLE 158 (589)
T ss_pred hCCH-------------HHHHHHHHHHHcCCeEEEECCCc-eeecCceEEEEecCCccccCCCCHHHHH--hccCeeecC
Confidence 8853 344667776663221 2222331 12235678899999775 79999999 9999777
Q ss_pred -cCCHHHHHHHHHhhh
Q 013704 307 -APTREDRIGVCSGIF 321 (438)
Q Consensus 307 -lP~~e~R~~Il~~~l 321 (438)
+|..++|.+|++..+
T Consensus 159 ~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 159 DVASQDLRVEIVRRER 174 (589)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 488899999987654
No 171
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.84 E-value=3.8e-08 Score=100.43 Aligned_cols=85 Identities=16% Similarity=0.198 Sum_probs=56.0
Q ss_pred hCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCC-ccccCCccccCCCCCceEEEecCCCC-CCCccccC
Q 013704 220 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-NVQLPGMYNQEENPRVPIIVTGNDFS-TLYAPLIR 297 (438)
Q Consensus 220 ~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~-~v~ldg~~~~~~~~~v~VI~TTN~~~-~Ld~aLlR 297 (438)
+....+|||||++.+.+. +++.|++.+++-. .++-+|.- .....++.+|+|.|..+ .++++|+.
T Consensus 142 ~A~~GiL~lDEInrL~~~-------------~Q~~LLeam~e~~~~ier~G~s-~~~p~rfiviaT~np~eg~l~~~Lld 207 (350)
T CHL00081 142 KANRGILYVDEVNLLDDH-------------LVDILLDSAASGWNTVEREGIS-IRHPARFVLVGSGNPEEGELRPQLLD 207 (350)
T ss_pred ecCCCEEEecChHhCCHH-------------HHHHHHHHHHhCCeEEeeCCee-eecCCCEEEEeccCcccCCCCHHHHH
Confidence 344679999999988543 3355676665211 12223431 12335677777778655 68999999
Q ss_pred CCcceEEEec--CC-HHHHHHHHHhh
Q 013704 298 DGRMEKFYWA--PT-REDRIGVCSGI 320 (438)
Q Consensus 298 ~GRfd~~i~l--P~-~e~R~~Il~~~ 320 (438)
||...+.+ |+ .+.|.+|++..
T Consensus 208 --Rf~l~i~l~~~~~~~~e~~il~~~ 231 (350)
T CHL00081 208 --RFGMHAEIRTVKDPELRVKIVEQR 231 (350)
T ss_pred --HhCceeecCCCCChHHHHHHHHhh
Confidence 99988884 65 69999999864
No 172
>PRK09087 hypothetical protein; Validated
Probab=98.82 E-value=3e-08 Score=95.45 Aligned_cols=134 Identities=17% Similarity=0.181 Sum_probs=83.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCC
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~ 239 (438)
.-++||||+|+|||+|++++|+..+.. +++...+. ...+... ...+|+|||++.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~-----------~~~~~~~-------~~~~l~iDDi~~~~~--- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIG-----------SDAANAA-------AEGPVLIEDIDAGGF--- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcc-----------hHHHHhh-------hcCeEEEECCCCCCC---
Confidence 348999999999999999999987654 34433222 1111111 125888999997621
Q ss_pred CCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCC-CC---CCCccccCCCcce--EEEe--cCCHH
Q 013704 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND-FS---TLYAPLIRDGRME--KFYW--APTRE 311 (438)
Q Consensus 240 ~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~-~~---~Ld~aLlR~GRfd--~~i~--lP~~e 311 (438)
++ ..|.++++ . ....+..+|+|++. |. ...+.|+. ||. ..+. -|+.+
T Consensus 102 --~~---------~~lf~l~n----------~--~~~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e 156 (226)
T PRK09087 102 --DE---------TGLFHLIN----------S--VRQAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDA 156 (226)
T ss_pred --CH---------HHHHHHHH----------H--HHhCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHH
Confidence 12 12333333 0 11223456665553 33 23677888 775 4444 49999
Q ss_pred HHHHHHHhhhCCC--CCCHHHHHHHHccCCcc
Q 013704 312 DRIGVCSGIFRTD--NVPKEDIVKLVDTFPGQ 341 (438)
Q Consensus 312 ~R~~Il~~~l~~~--~v~~~~la~l~~~~sga 341 (438)
+|.+|++..+... .++.+.+..++..+++.
T Consensus 157 ~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~ 188 (226)
T PRK09087 157 LLSQVIFKLFADRQLYVDPHVVYYLVSRMERS 188 (226)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhh
Confidence 9999999888654 45666777777777643
No 173
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.81 E-value=1e-07 Score=97.16 Aligned_cols=156 Identities=13% Similarity=0.177 Sum_probs=98.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCce-------------------------EEEeccccccC-------------
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINP-------------------------IMMSAGELESG------------- 198 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~-------------------------i~vs~~~l~s~------------- 198 (438)
+.|.++||+||+|+||+.+|+.+|+.+...- ..+........
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 7899999999999999999999999975421 11111100000
Q ss_pred -CCC---------ChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccC
Q 013704 199 -NAG---------EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 268 (438)
Q Consensus 199 -~~G---------e~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ld 268 (438)
-.| -.-..||.+.+........+...|+|||++|.+... ..+.|+..++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~-------------AaNaLLKtLE-------- 157 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVA-------------AANALLKTLE-------- 157 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHH-------------HHHHHHHHhc--------
Confidence 000 112345555544321111345569999999988432 2355666555
Q ss_pred CccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCCCC-HHHHHHHHccCCcchhH
Q 013704 269 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVP-KEDIVKLVDTFPGQSID 344 (438)
Q Consensus 269 g~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~v~-~~~la~l~~~~sgadi~ 344 (438)
+..+++.+|.+|++++.|.|.+++ |+..+.. .|+.++..+.+... +++ .+.+..++.+-++..++
T Consensus 158 -----EPp~~t~fiL~t~~~~~LLpTI~S--Rcq~i~~~~~~~~~~~~~L~~~----~~~~~~~~l~~~~Gsp~~Al~ 224 (342)
T PRK06964 158 -----EPPPGTVFLLVSARIDRLLPTILS--RCRQFPMTVPAPEAAAAWLAAQ----GVADADALLAEAGGAPLAALA 224 (342)
T ss_pred -----CCCcCcEEEEEECChhhCcHHHHh--cCEEEEecCCCHHHHHHHHHHc----CCChHHHHHHHcCCCHHHHHH
Confidence 677889999999999999999999 8855444 57888888887653 222 22344455555444443
No 174
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.81 E-value=6.7e-08 Score=101.91 Aligned_cols=135 Identities=14% Similarity=0.166 Sum_probs=74.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC--ceEEEecc-ccccCCCCCh-HHHH--HHHHHHHHHHHHhC---CceeEEecc
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAG-ELESGNAGEP-AKLI--RQRYREAADIIKKG---KMCCLFIND 230 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~--~~i~vs~~-~l~s~~~Ge~-~~~i--r~~f~~A~~~~~~~---~p~ILfIDE 230 (438)
..+||+||||||||++|+++++..+. +|....+. ...+...|.. -... ...|.... .+ ...+||+||
T Consensus 40 ~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~----~G~L~~A~lLfLDE 115 (498)
T PRK13531 40 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLT----SGYLPEAEIVFLDE 115 (498)
T ss_pred CCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhc----CCccccccEEeecc
Confidence 46999999999999999999998653 33333222 1112222321 0110 11222111 11 234999999
Q ss_pred ccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCc------cccCCCcceEE
Q 013704 231 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA------PLIRDGRMEKF 304 (438)
Q Consensus 231 iD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~------aLlR~GRfd~~ 304 (438)
|..+.+ .+.+.|++++. +..+..+|. ....+..++++|||. |++ ++.. ||-..
T Consensus 116 I~rasp-------------~~QsaLLeam~-Er~~t~g~~--~~~lp~rfiv~ATN~---LPE~g~~leAL~D--RFlir 174 (498)
T PRK13531 116 IWKAGP-------------AILNTLLTAIN-ERRFRNGAH--EEKIPMRLLVTASNE---LPEADSSLEALYD--RMLIR 174 (498)
T ss_pred cccCCH-------------HHHHHHHHHHH-hCeEecCCe--EEeCCCcEEEEECCC---CcccCCchHHhHh--hEEEE
Confidence 974432 34577777775 334444443 112233344556663 554 7888 88666
Q ss_pred Eec--CC-HHHHHHHHHh
Q 013704 305 YWA--PT-REDRIGVCSG 319 (438)
Q Consensus 305 i~l--P~-~e~R~~Il~~ 319 (438)
+.+ |+ .++-.+|+..
T Consensus 175 i~vp~l~~~~~e~~lL~~ 192 (498)
T PRK13531 175 LWLDKVQDKANFRSMLTS 192 (498)
T ss_pred EECCCCCchHHHHHHHHc
Confidence 665 43 4555777764
No 175
>PRK04132 replication factor C small subunit; Provisional
Probab=98.81 E-value=2.7e-08 Score=111.28 Aligned_cols=145 Identities=17% Similarity=0.161 Sum_probs=103.9
Q ss_pred EEEEc--CCCCcHHHHHHHHHHHh-----CCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHh--CCceeEEecccc
Q 013704 162 LGIWG--GKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK--GKMCCLFINDLD 232 (438)
Q Consensus 162 lLL~G--PPGtGKT~lA~aIA~~l-----g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~--~~p~ILfIDEiD 232 (438)
-+..| |++.|||++|+++|+++ +.+++.+++++-.+ -..||++.+.+...... .+..|+||||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 34558 99999999999999997 56899999986421 34677776655411111 123699999999
Q ss_pred ccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe-cCCHH
Q 013704 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRE 311 (438)
Q Consensus 233 ~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~-lP~~e 311 (438)
.+... .++.|+.+++ +...++++|++||+++.+.++|++ |+..+-. .|+.+
T Consensus 641 ~Lt~~-------------AQnALLk~lE-------------ep~~~~~FILi~N~~~kIi~tIrS--RC~~i~F~~ls~~ 692 (846)
T PRK04132 641 ALTQD-------------AQQALRRTME-------------MFSSNVRFILSCNYSSKIIEPIQS--RCAIFRFRPLRDE 692 (846)
T ss_pred cCCHH-------------HHHHHHHHhh-------------CCCCCeEEEEEeCChhhCchHHhh--hceEEeCCCCCHH
Confidence 88431 2356777555 556788999999999999999999 8855544 47788
Q ss_pred HHHHHHHhhhCCCCC--CHHHHHHHHccCCc
Q 013704 312 DRIGVCSGIFRTDNV--PKEDIVKLVDTFPG 340 (438)
Q Consensus 312 ~R~~Il~~~l~~~~v--~~~~la~l~~~~sg 340 (438)
+-...++.+....++ +.+.+..++....|
T Consensus 693 ~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~G 723 (846)
T PRK04132 693 DIAKRLRYIAENEGLELTEEGLQAILYIAEG 723 (846)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 888888877766554 55566666655555
No 176
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.81 E-value=1.7e-07 Score=94.22 Aligned_cols=151 Identities=15% Similarity=0.127 Sum_probs=94.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc--------eEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEE
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN--------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~--------~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILf 227 (438)
.+.|..+||+||+|+|||++|+++|+.+-.. ++.+... .++. -.-..||++.+.+...--.....|++
T Consensus 23 ~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~--~~~~--i~v~~ir~~~~~~~~~p~~~~~kv~i 98 (313)
T PRK05564 23 NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI--NKKS--IGVDDIRNIIEEVNKKPYEGDKKVII 98 (313)
T ss_pred CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--cCCC--CCHHHHHHHHHHHhcCcccCCceEEE
Confidence 3567889999999999999999999986332 2222211 1111 12234666555432111145567999
Q ss_pred eccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe-
Q 013704 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW- 306 (438)
Q Consensus 228 IDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~- 306 (438)
|||+|.+.. ...+.|+..++ +..+++.+|.+|+.++.|.+.+++ |+..+..
T Consensus 99 I~~ad~m~~-------------~a~naLLK~LE-------------epp~~t~~il~~~~~~~ll~TI~S--Rc~~~~~~ 150 (313)
T PRK05564 99 IYNSEKMTE-------------QAQNAFLKTIE-------------EPPKGVFIILLCENLEQILDTIKS--RCQIYKLN 150 (313)
T ss_pred EechhhcCH-------------HHHHHHHHHhc-------------CCCCCeEEEEEeCChHhCcHHHHh--hceeeeCC
Confidence 999987732 12345666554 556777888888889999999998 7754333
Q ss_pred cCCHHHHHHHHHhhhCCCCCCHHHHHHHHccCCc
Q 013704 307 APTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPG 340 (438)
Q Consensus 307 lP~~e~R~~Il~~~l~~~~v~~~~la~l~~~~sg 340 (438)
.|+.++-...+...+. .++.+.+..++....|
T Consensus 151 ~~~~~~~~~~l~~~~~--~~~~~~~~~l~~~~~g 182 (313)
T PRK05564 151 RLSKEEIEKFISYKYN--DIKEEEKKSAIAFSDG 182 (313)
T ss_pred CcCHHHHHHHHHHHhc--CCCHHHHHHHHHHcCC
Confidence 3677777777765443 4555555554443333
No 177
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.80 E-value=3.2e-09 Score=98.57 Aligned_cols=102 Identities=20% Similarity=0.226 Sum_probs=59.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH---hCCceEEEeccccccCCCCCh-HHHHHHHHHHHHHHHHhCCceeEEecccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESGNAGEP-AKLIRQRYREAADIIKKGKMCCLFINDLD 232 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs~~~l~s~~~Ge~-~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (438)
....+++|+||||||||+||.+++++ .|.++.+++.++|...+.... .......++. -....+|+|||+.
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~------l~~~dlLilDDlG 118 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKR------LKRVDLLILDDLG 118 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHH------HHTSSCEEEETCT
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCc------cccccEecccccc
Confidence 45679999999999999999999988 488888998887764321110 0001112221 2357899999996
Q ss_pred ccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCC
Q 013704 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 288 (438)
Q Consensus 233 ~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~ 288 (438)
..-.. ......|.++++ ....+.++|+|||..
T Consensus 119 ~~~~~-----------~~~~~~l~~ii~-------------~R~~~~~tIiTSN~~ 150 (178)
T PF01695_consen 119 YEPLS-----------EWEAELLFEIID-------------ERYERKPTIITSNLS 150 (178)
T ss_dssp SS--------------HHHHHCTHHHHH-------------HHHHT-EEEEEESS-
T ss_pred eeeec-----------ccccccchhhhh-------------HhhcccCeEeeCCCc
Confidence 44211 122345566665 112234899999964
No 178
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.80 E-value=3.1e-08 Score=108.78 Aligned_cols=143 Identities=20% Similarity=0.203 Sum_probs=89.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh-----------------------------------CCceEEEeccccccCCCCChH
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKM-----------------------------------GINPIMMSAGELESGNAGEPA 204 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~l-----------------------------------g~~~i~vs~~~l~s~~~Ge~~ 204 (438)
.+|||+||||||||++|+++++.+ ..+|+.+..+......+|.-.
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d 105 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD 105 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc
Confidence 579999999999999999999987 245565555444433444310
Q ss_pred HHHHHHHHHH-----HHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCC-ccccCCccccCCCCC
Q 013704 205 KLIRQRYREA-----ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-NVQLPGMYNQEENPR 278 (438)
Q Consensus 205 ~~ir~~f~~A-----~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~-~v~ldg~~~~~~~~~ 278 (438)
+...++.. ..++......+|||||++.+.. .+...|++.+++-. .+.-+|.. .....+
T Consensus 106 --~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~-------------~~q~~Ll~~le~g~~~v~r~g~~-~~~~~~ 169 (633)
T TIGR02442 106 --IERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD-------------HLVDVLLDAAAMGVNRVEREGLS-VSHPAR 169 (633)
T ss_pred --HHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH-------------HHHHHHHHHHhcCCEEEEECCce-eeecCC
Confidence 11111100 0011133456999999998843 23456777666332 23334431 123467
Q ss_pred ceEEEecCCC-CCCCccccCCCcceEEEec---CCHHHHHHHHHhh
Q 013704 279 VPIIVTGNDF-STLYAPLIRDGRMEKFYWA---PTREDRIGVCSGI 320 (438)
Q Consensus 279 v~VI~TTN~~-~~Ld~aLlR~GRfd~~i~l---P~~e~R~~Il~~~ 320 (438)
+.+|+|+|.. ..+.++|+. ||+..+.+ .+.++|.+|++..
T Consensus 170 ~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 170 FVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred eEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHH
Confidence 8899999854 368889999 99988885 3567788887643
No 179
>PRK06526 transposase; Provisional
Probab=98.80 E-value=5e-09 Score=102.60 Aligned_cols=103 Identities=17% Similarity=0.159 Sum_probs=61.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCCCCC-hHHHHHHHHHHHHHHHHhCCceeEEeccc
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGE-PAKLIRQRYREAADIIKKGKMCCLFINDL 231 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~~Ge-~~~~ir~~f~~A~~~~~~~~p~ILfIDEi 231 (438)
+..+.+++|+||||||||+||.+|+.++ |..++.++..++....... ....+...+ .+-..+.+|+|||+
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l------~~l~~~dlLIIDD~ 168 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAEL------VKLGRYPLLIVDEV 168 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHH------HHhccCCEEEEccc
Confidence 3456789999999999999999999874 6666666665554221100 000011111 11345789999999
Q ss_pred cccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCC
Q 013704 232 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 288 (438)
Q Consensus 232 D~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~ 288 (438)
+.+.... .....|.++++ ....+..+|+|||.+
T Consensus 169 g~~~~~~-----------~~~~~L~~li~-------------~r~~~~s~IitSn~~ 201 (254)
T PRK06526 169 GYIPFEP-----------EAANLFFQLVS-------------SRYERASLIVTSNKP 201 (254)
T ss_pred ccCCCCH-----------HHHHHHHHHHH-------------HHHhcCCEEEEcCCC
Confidence 8764321 12234555544 112234689999986
No 180
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.78 E-value=5.8e-08 Score=103.13 Aligned_cols=158 Identities=13% Similarity=0.204 Sum_probs=106.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCce--EEEec------cccccC-C---------CCChHHHHHHHHHHHHHH
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINP--IMMSA------GELESG-N---------AGEPAKLIRQRYREAADI 217 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~--i~vs~------~~l~s~-~---------~Ge~~~~ir~~f~~A~~~ 217 (438)
-+.+.+.||.||.|||||++||.+|+.+++.- ..--| -.+..+ + -...-..||++.+++.-.
T Consensus 35 ~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~ 114 (515)
T COG2812 35 GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYA 114 (515)
T ss_pred CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccC
Confidence 35678899999999999999999999987641 11011 111111 0 011234566666655211
Q ss_pred HHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccC
Q 013704 218 IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR 297 (438)
Q Consensus 218 ~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR 297 (438)
--..+..|.+|||++.+... .. +.|+.-++ +...+|.+|.+|..+..+++-+++
T Consensus 115 P~~~ryKVyiIDEvHMLS~~------------af-NALLKTLE-------------EPP~hV~FIlATTe~~Kip~TIlS 168 (515)
T COG2812 115 PSEGRYKVYIIDEVHMLSKQ------------AF-NALLKTLE-------------EPPSHVKFILATTEPQKIPNTILS 168 (515)
T ss_pred CccccceEEEEecHHhhhHH------------HH-HHHhcccc-------------cCccCeEEEEecCCcCcCchhhhh
Confidence 11455669999999988532 22 34554333 677889999999999999999998
Q ss_pred CCcceEEEe-cCCHHHHHHHHHhhhCCCCCCHH--HHHHHHccCCcc
Q 013704 298 DGRMEKFYW-APTREDRIGVCSGIFRTDNVPKE--DIVKLVDTFPGQ 341 (438)
Q Consensus 298 ~GRfd~~i~-lP~~e~R~~Il~~~l~~~~v~~~--~la~l~~~~sga 341 (438)
|+.++-+ .-+.++....+..++...++..+ .+..++....|.
T Consensus 169 --Rcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs 213 (515)
T COG2812 169 --RCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGS 213 (515)
T ss_pred --ccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCC
Confidence 8877666 35666888888889888777644 566666666663
No 181
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.74 E-value=2.7e-08 Score=101.20 Aligned_cols=84 Identities=17% Similarity=0.209 Sum_probs=56.7
Q ss_pred hCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCC-ccccCCccccCCCCCceEEEecCCCC-CCCccccC
Q 013704 220 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-NVQLPGMYNQEENPRVPIIVTGNDFS-TLYAPLIR 297 (438)
Q Consensus 220 ~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~-~v~ldg~~~~~~~~~v~VI~TTN~~~-~Ld~aLlR 297 (438)
+....+|||||++.+.+ .+++.|++.+++-. .++-+|.. .....++.+|+|+|..+ .++++|+.
T Consensus 129 ~A~~GvL~lDEi~~L~~-------------~~Q~~Ll~~l~~g~~~v~r~G~~-~~~~~r~iviat~np~eg~l~~~Lld 194 (337)
T TIGR02030 129 RANRGILYIDEVNLLED-------------HLVDVLLDVAASGWNVVEREGIS-IRHPARFVLVGSGNPEEGELRPQLLD 194 (337)
T ss_pred eccCCEEEecChHhCCH-------------HHHHHHHHHHHhCCeEEEECCEE-EEcCCCEEEEeccccccCCCCHHHHh
Confidence 34568999999998733 34466777665321 23335541 12335777888888655 68999999
Q ss_pred CCcceEEEec--CC-HHHHHHHHHh
Q 013704 298 DGRMEKFYWA--PT-REDRIGVCSG 319 (438)
Q Consensus 298 ~GRfd~~i~l--P~-~e~R~~Il~~ 319 (438)
||...+.+ |. .++|.+|++.
T Consensus 195 --Rf~l~i~l~~p~~~eer~eIL~~ 217 (337)
T TIGR02030 195 --RFGLHAEIRTVRDVELRVEIVER 217 (337)
T ss_pred --hcceEEECCCCCCHHHHHHHHHh
Confidence 99988874 54 4888999876
No 182
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=2.4e-07 Score=93.47 Aligned_cols=159 Identities=14% Similarity=0.158 Sum_probs=99.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------eEEEeccccccC---------CCC--------
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------PIMMSAGELESG---------NAG-------- 201 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~------------------~i~vs~~~l~s~---------~~G-------- 201 (438)
+.|..+||+||+|+||+.+|.++|+.+-.. ++.+.......+ ..|
T Consensus 24 rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (314)
T PRK07399 24 RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQ 103 (314)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhcccccccccc
Confidence 567899999999999999999999995322 122211100000 000
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceE
Q 013704 202 EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 281 (438)
Q Consensus 202 e~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~V 281 (438)
-.-..+|++.+.+...--.....|++||++|.+.. ...+.|+..++ +.. +..+
T Consensus 104 I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~-------------~aaNaLLK~LE-------------EPp-~~~f 156 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE-------------AAANALLKTLE-------------EPG-NGTL 156 (314)
T ss_pred CcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH-------------HHHHHHHHHHh-------------CCC-CCeE
Confidence 00123455544332111145667999999988732 22356777665 333 5567
Q ss_pred EEecCCCCCCCccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCCCCH--HHHHHHHccCCcchhH
Q 013704 282 IVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVPK--EDIVKLVDTFPGQSID 344 (438)
Q Consensus 282 I~TTN~~~~Ld~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~v~~--~~la~l~~~~sgadi~ 344 (438)
|.+|+.++.|.+.+++ |+..+.. .|+.++-.+++.........+. +.+..++.|-++..+.
T Consensus 157 ILi~~~~~~Ll~TI~S--Rcq~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 157 ILIAPSPESLLPTIVS--RCQIIPFYRLSDEQLEQVLKRLGDEEILNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred EEEECChHhCcHHHHh--hceEEecCCCCHHHHHHHHHHhhccccchhHHHHHHHHcCCCHHHHHH
Confidence 8888899999999999 8855554 4788888888887654444343 4566666666665555
No 183
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.68 E-value=9.9e-07 Score=85.91 Aligned_cols=172 Identities=14% Similarity=0.142 Sum_probs=87.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCC-ceEE--Eeccc---------ccc----CCCCCh-HHHHHHHHHHHHHHHHhC
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGI-NPIM--MSAGE---------LES----GNAGEP-AKLIRQRYREAADIIKKG 221 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~-~~i~--vs~~~---------l~s----~~~Ge~-~~~ir~~f~~A~~~~~~~ 221 (438)
+..++|+||+|+|||++++.+++.+.. .+.. +.... +.. ...+.. ...++.+...........
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 456889999999999999999999753 2221 11111 110 111111 122233333222233367
Q ss_pred CceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCC--CCCC----Cccc
Q 013704 222 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND--FSTL----YAPL 295 (438)
Q Consensus 222 ~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~--~~~L----d~aL 295 (438)
.+.+|+|||++.+... ....|..+.+ +.......+.|++++.. .+.+ ..++
T Consensus 123 ~~~vliiDe~~~l~~~-------------~~~~l~~l~~----------~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l 179 (269)
T TIGR03015 123 KRALLVVDEAQNLTPE-------------LLEELRMLSN----------FQTDNAKLLQIFLVGQPEFRETLQSPQLQQL 179 (269)
T ss_pred CCeEEEEECcccCCHH-------------HHHHHHHHhC----------cccCCCCeEEEEEcCCHHHHHHHcCchhHHH
Confidence 8899999999876321 1122222222 11112234455555432 1111 1235
Q ss_pred cCCCcceEEEec--CCHHHHHHHHHhhhCC------CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhH
Q 013704 296 IRDGRMEKFYWA--PTREDRIGVCSGIFRT------DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 356 (438)
Q Consensus 296 lR~GRfd~~i~l--P~~e~R~~Il~~~l~~------~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~ 356 (438)
.+ |+...+.+ .+.++..+++...+.. ..++.+.+..+.+...|-... +..++..+...
T Consensus 180 ~~--r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~-i~~l~~~~~~~ 245 (269)
T TIGR03015 180 RQ--RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL-INILCDRLLLS 245 (269)
T ss_pred Hh--heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH-HHHHHHHHHHH
Confidence 55 66666665 4778888887765542 246666665555555443333 22455554333
No 184
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.67 E-value=1.3e-07 Score=92.70 Aligned_cols=69 Identities=22% Similarity=0.332 Sum_probs=52.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCCCCChHHHHHHHHHH---HHHHHH-hCCceeEEecc
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYRE---AADIIK-KGKMCCLFIND 230 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~---A~~~~~-~~~p~ILfIDE 230 (438)
.+.+++|+||||+|||+||-||++++ |.+++.+..+++.. .++..|.. ...+.+ -....+|||||
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~--------~Lk~~~~~~~~~~~l~~~l~~~dlLIiDD 175 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLS--------KLKAAFDEGRLEEKLLRELKKVDLLIIDD 175 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHH--------HHHHHHhcCchHHHHHHHhhcCCEEEEec
Confidence 67899999999999999999999995 78889999888773 34444442 112233 45678999999
Q ss_pred cccc
Q 013704 231 LDAG 234 (438)
Q Consensus 231 iD~l 234 (438)
+...
T Consensus 176 lG~~ 179 (254)
T COG1484 176 IGYE 179 (254)
T ss_pred ccCc
Confidence 9765
No 185
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=2e-07 Score=94.42 Aligned_cols=137 Identities=9% Similarity=0.084 Sum_probs=91.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCce-E-EEec--------------cccc--cCCCC--ChHHHHHHHHHHHH
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINP-I-MMSA--------------GELE--SGNAG--EPAKLIRQRYREAA 215 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~-i-~vs~--------------~~l~--s~~~G--e~~~~ir~~f~~A~ 215 (438)
.+.|..+||+||+|+||+.+|+++|+.+-..- - .-.| +++. ....| -....||++-+.+.
T Consensus 21 ~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~ 100 (325)
T PRK06871 21 GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVS 100 (325)
T ss_pred CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHh
Confidence 35688999999999999999999999964311 0 0000 1110 00011 12445666655443
Q ss_pred HHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccc
Q 013704 216 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPL 295 (438)
Q Consensus 216 ~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aL 295 (438)
.....+.--|++||++|++.. ...+.|+..++ +..+++.+|.+|+.++.|.|.+
T Consensus 101 ~~~~~g~~KV~iI~~a~~m~~-------------~AaNaLLKtLE-------------EPp~~~~fiL~t~~~~~llpTI 154 (325)
T PRK06871 101 QHAQQGGNKVVYIQGAERLTE-------------AAANALLKTLE-------------EPRPNTYFLLQADLSAALLPTI 154 (325)
T ss_pred hccccCCceEEEEechhhhCH-------------HHHHHHHHHhc-------------CCCCCeEEEEEECChHhCchHH
Confidence 222245567999999998843 22356777565 6778889999999999999999
Q ss_pred cCCCcceEEEe-cCCHHHHHHHHHhh
Q 013704 296 IRDGRMEKFYW-APTREDRIGVCSGI 320 (438)
Q Consensus 296 lR~GRfd~~i~-lP~~e~R~~Il~~~ 320 (438)
++ |+..+.. .|+.++-.+.+...
T Consensus 155 ~S--RC~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 155 YS--RCQTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred Hh--hceEEeCCCCCHHHHHHHHHHH
Confidence 99 8866655 46777777777654
No 186
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.66 E-value=5.4e-07 Score=91.46 Aligned_cols=130 Identities=12% Similarity=0.086 Sum_probs=84.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------eEEEeccccccCCCCChHHHHHHHH
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRY 211 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~------------------------~i~vs~~~l~s~~~Ge~~~~ir~~f 211 (438)
.+.|..+|||||+|+|||++|+++|+.+-.+ +..+... +.. -.-..||++.
T Consensus 25 ~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~---~~~--i~id~ir~l~ 99 (329)
T PRK08058 25 NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD---GQS--IKKDQIRYLK 99 (329)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc---ccc--CCHHHHHHHH
Confidence 3578889999999999999999999996431 1122111 000 1123455554
Q ss_pred HHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCC
Q 013704 212 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTL 291 (438)
Q Consensus 212 ~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~L 291 (438)
+.....--....-|++|||+|.+.. ...+.|+..++ +..+++.+|.+|+.+..|
T Consensus 100 ~~~~~~~~~~~~kvviI~~a~~~~~-------------~a~NaLLK~LE-------------EPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 100 EEFSKSGVESNKKVYIIEHADKMTA-------------SAANSLLKFLE-------------EPSGGTTAILLTENKHQI 153 (329)
T ss_pred HHHhhCCcccCceEEEeehHhhhCH-------------HHHHHHHHHhc-------------CCCCCceEEEEeCChHhC
Confidence 4332000134556999999987732 22356777555 566778888899999999
Q ss_pred CccccCCCcceEEEe-cCCHHHHHHHHH
Q 013704 292 YAPLIRDGRMEKFYW-APTREDRIGVCS 318 (438)
Q Consensus 292 d~aLlR~GRfd~~i~-lP~~e~R~~Il~ 318 (438)
.+.+++ |+..+.. .|+.++-.+.++
T Consensus 154 l~TIrS--Rc~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 154 LPTILS--RCQVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred cHHHHh--hceeeeCCCCCHHHHHHHHH
Confidence 999999 8765555 477777766665
No 187
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.66 E-value=2.6e-08 Score=106.70 Aligned_cols=141 Identities=13% Similarity=0.206 Sum_probs=86.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEEE----eccccccCCCCC--hHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMM----SAGELESGNAGE--PAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~v----s~~~l~s~~~Ge--~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~ 233 (438)
..|||+|+||||||.+|+++++......+.. ++..+....... +... .++ +- .+......+++|||+|.
T Consensus 237 ~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~---~~~-~G-~l~~A~~Gil~iDEi~~ 311 (509)
T smart00350 237 INILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREF---TLE-GG-ALVLADNGVCCIDEFDK 311 (509)
T ss_pred ceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceE---Eec-Cc-cEEecCCCEEEEechhh
Confidence 4799999999999999999999875432221 111121100000 0000 000 00 01134567999999998
Q ss_pred cccCCCCCccccchhHHHHHHHHHhhcCCCcccc--CCccccCCCCCceEEEecCCCC-------------CCCccccCC
Q 013704 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL--PGMYNQEENPRVPIIVTGNDFS-------------TLYAPLIRD 298 (438)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~l--dg~~~~~~~~~v~VI~TTN~~~-------------~Ld~aLlR~ 298 (438)
+-.. ....|++.++. ..+.+ .|. ......+..||+|+|... .|++++++
T Consensus 312 l~~~-------------~q~~L~e~me~-~~i~i~k~G~-~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs- 375 (509)
T smart00350 312 MDDS-------------DRTAIHEAMEQ-QTISIAKAGI-TTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS- 375 (509)
T ss_pred CCHH-------------HHHHHHHHHhc-CEEEEEeCCE-EEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC-
Confidence 8432 23455665542 22222 332 112346788999999653 59999999
Q ss_pred CcceEEEec---CCHHHHHHHHHhhhC
Q 013704 299 GRMEKFYWA---PTREDRIGVCSGIFR 322 (438)
Q Consensus 299 GRfd~~i~l---P~~e~R~~Il~~~l~ 322 (438)
|||.++.+ |+.+.+.+|.+.++.
T Consensus 376 -RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 376 -RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred -ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 99998883 999999999987653
No 188
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=6.8e-07 Score=90.37 Aligned_cols=157 Identities=15% Similarity=0.169 Sum_probs=98.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCce-EE---E---------eccccc-----cCCCCC------hHHHHHHHH
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINP-IM---M---------SAGELE-----SGNAGE------PAKLIRQRY 211 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~-i~---v---------s~~~l~-----s~~~Ge------~~~~ir~~f 211 (438)
.+.|..+||+||+|+||+.+|.++|+.+-..- .. + +-+++. -...|. .-..||++.
T Consensus 23 ~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~ 102 (319)
T PRK08769 23 GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREIS 102 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHH
Confidence 36788999999999999999999999854320 00 0 001111 000111 133455554
Q ss_pred HHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCC
Q 013704 212 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTL 291 (438)
Q Consensus 212 ~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~L 291 (438)
+.+...-..+.--|++||++|.+.. ...+.|+..++ +..+++.+|.+|+.++.|
T Consensus 103 ~~~~~~p~~g~~kV~iI~~ae~m~~-------------~AaNaLLKtLE-------------EPp~~~~fiL~~~~~~~l 156 (319)
T PRK08769 103 QKLALTPQYGIAQVVIVDPADAINR-------------AACNALLKTLE-------------EPSPGRYLWLISAQPARL 156 (319)
T ss_pred HHHhhCcccCCcEEEEeccHhhhCH-------------HHHHHHHHHhh-------------CCCCCCeEEEEECChhhC
Confidence 4432111134456999999998832 22355666565 667788999999999999
Q ss_pred CccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCCCCHH---HHHHHHccCCcchhH
Q 013704 292 YAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVPKE---DIVKLVDTFPGQSID 344 (438)
Q Consensus 292 d~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~v~~~---~la~l~~~~sgadi~ 344 (438)
.|.+++ |+..+.. .|+.++-.+.+.. .+++.+ .+..++.|.++..++
T Consensus 157 LpTIrS--RCq~i~~~~~~~~~~~~~L~~----~~~~~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 157 PATIRS--RCQRLEFKLPPAHEALAWLLA----QGVSERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred chHHHh--hheEeeCCCcCHHHHHHHHHH----cCCChHHHHHHHHHcCCCHHHHHH
Confidence 999999 8876655 4788777766653 245555 344555555554444
No 189
>PRK09183 transposase/IS protein; Provisional
Probab=98.64 E-value=3.2e-08 Score=97.21 Aligned_cols=104 Identities=13% Similarity=0.062 Sum_probs=63.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCceEEEeccccccCCCCC-hHHHHHHHHHHHHHHHHhCCceeEEeccc
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESGNAGE-PAKLIRQRYREAADIIKKGKMCCLFINDL 231 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs~~~l~s~~~Ge-~~~~ir~~f~~A~~~~~~~~p~ILfIDEi 231 (438)
+....+++|+||||||||+|+.+++.+ .|..+.+++..++...+... ....+...+... ...+++|+|||+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-----~~~~dlLiiDdl 173 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-----VMAPRLLIIDEI 173 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-----hcCCCEEEEccc
Confidence 444578999999999999999999876 47777777766554221100 000122233321 356789999999
Q ss_pred cccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCC
Q 013704 232 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 288 (438)
Q Consensus 232 D~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~ 288 (438)
+...... .....|.++++ ....+-.+|+|||.+
T Consensus 174 g~~~~~~-----------~~~~~lf~li~-------------~r~~~~s~iiTsn~~ 206 (259)
T PRK09183 174 GYLPFSQ-----------EEANLFFQVIA-------------KRYEKGSMILTSNLP 206 (259)
T ss_pred ccCCCCh-----------HHHHHHHHHHH-------------HHHhcCcEEEecCCC
Confidence 7653321 11235566555 111223588999975
No 190
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=1.8e-07 Score=95.18 Aligned_cols=155 Identities=13% Similarity=0.117 Sum_probs=99.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------eEEEeccccccCCCCChHHHHHHHH
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRY 211 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~------------------------~i~vs~~~l~s~~~Ge~~~~ir~~f 211 (438)
.+.|..+||+||+|+||+.+|.++|+.+-.. +..+... .+-..-.-..||++-
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~---~~~~~I~idqiR~l~ 97 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPE---KGKSSLGVDAVREVT 97 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecc---cccccCCHHHHHHHH
Confidence 4678999999999999999999999996331 1111110 000001234566655
Q ss_pred HHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCC
Q 013704 212 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTL 291 (438)
Q Consensus 212 ~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~L 291 (438)
+.+......+..-|+|||++|++-. ...+.|+..++ +..+++.+|.+|+.++.|
T Consensus 98 ~~~~~~~~~g~~kV~iI~~ae~m~~-------------~AaNaLLKtLE-------------EPp~~t~fiL~t~~~~~l 151 (334)
T PRK07993 98 EKLYEHARLGGAKVVWLPDAALLTD-------------AAANALLKTLE-------------EPPENTWFFLACREPARL 151 (334)
T ss_pred HHHhhccccCCceEEEEcchHhhCH-------------HHHHHHHHHhc-------------CCCCCeEEEEEECChhhC
Confidence 5443222256667999999998842 23356777666 677888999999999999
Q ss_pred CccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCCCCHHH---HHHHHccCCcchhH
Q 013704 292 YAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVPKED---IVKLVDTFPGQSID 344 (438)
Q Consensus 292 d~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~v~~~~---la~l~~~~sgadi~ 344 (438)
.|.+++ |...+.. .|+.++..+.+... .+++.+. +..++.|-++..++
T Consensus 152 LpTIrS--RCq~~~~~~~~~~~~~~~L~~~---~~~~~~~a~~~~~la~G~~~~Al~ 203 (334)
T PRK07993 152 LATLRS--RCRLHYLAPPPEQYALTWLSRE---VTMSQDALLAALRLSAGAPGAALA 203 (334)
T ss_pred hHHHHh--ccccccCCCCCHHHHHHHHHHc---cCCCHHHHHHHHHHcCCCHHHHHH
Confidence 999999 8876544 46777776666432 2455543 34455555444443
No 191
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.60 E-value=8.2e-08 Score=88.37 Aligned_cols=121 Identities=17% Similarity=0.247 Sum_probs=73.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCCCCChHHHHHHHHHHH-----------HHHHHhCCc
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA-----------ADIIKKGKM 223 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A-----------~~~~~~~~p 223 (438)
.|..|||+|++||||+++|++|-+.. +.||+.++|+.+.. +..-.++|-.. ..+++....
T Consensus 21 ~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~------~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~ 94 (168)
T PF00158_consen 21 SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPE------ELLESELFGHEKGAFTGARSDKKGLLEQANG 94 (168)
T ss_dssp STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-H------HHHHHHHHEBCSSSSTTTSSEBEHHHHHTTT
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhc------chhhhhhhccccccccccccccCCceeeccc
Confidence 34679999999999999999999975 46899999987641 12223344221 123335668
Q ss_pred eeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcce
Q 013704 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME 302 (438)
Q Consensus 224 ~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd 302 (438)
..||||||+.+... ++..|++++++-+...+++. .....++.||+|||.. |. .+...|+|.
T Consensus 95 GtL~Ld~I~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~st~~~--l~-~~v~~g~fr 155 (168)
T PF00158_consen 95 GTLFLDEIEDLPPE-------------LQAKLLRVLEEGKFTRLGSD--KPVPVDVRIIASTSKD--LE-ELVEQGRFR 155 (168)
T ss_dssp SEEEEETGGGS-HH-------------HHHHHHHHHHHSEEECCTSS--SEEE--EEEEEEESS---HH-HHHHTTSS-
T ss_pred eEEeecchhhhHHH-------------HHHHHHHHHhhchhcccccc--ccccccceEEeecCcC--HH-HHHHcCCCh
Confidence 89999999988543 44566676663322222221 1224588999999863 22 244455663
No 192
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.53 E-value=1.1e-06 Score=96.23 Aligned_cols=32 Identities=31% Similarity=0.311 Sum_probs=27.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~ 189 (438)
....++|+||||||||++++++|++++..++.
T Consensus 109 ~~~illL~GP~GsGKTTl~~~la~~l~~~~~E 140 (637)
T TIGR00602 109 PKRILLITGPSGCGKSTTIKILSKELGIQVQE 140 (637)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhhhHHHH
Confidence 34579999999999999999999998876544
No 193
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.53 E-value=1.5e-06 Score=88.88 Aligned_cols=72 Identities=14% Similarity=0.124 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCC-------CCCCccccCCCcceEEEe--cCCHHHHHHHHHh
Q 013704 249 QMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-------STLYAPLIRDGRMEKFYW--APTREDRIGVCSG 319 (438)
Q Consensus 249 ~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~-------~~Ld~aLlR~GRfd~~i~--lP~~e~R~~Il~~ 319 (438)
..+...|+++++ +.+++++|... ...-...||+++|.. ....+||++ |+..+.. .-+..+-.+|.+.
T Consensus 250 ~~~l~~LL~~~q-E~~v~~~~~~~-~~~~d~liia~sNe~e~~~~~~~k~~eaf~d--R~~~i~vpY~l~~~~E~~Iy~k 325 (361)
T smart00763 250 IKFLHPLLTATQ-EGNIKGTGGFA-MIPIDGLIIAHSNESEWQRFKSNKKNEALLD--RIIKVKVPYCLRVSEEAQIYEK 325 (361)
T ss_pred HHHHHHHhhhhh-cceEecCCccc-ccccceEEEEeCCHHHHhhhhccccchhhhh--ceEEEeCCCcCCHHHHHHHHHH
Confidence 445566666666 45666654311 122344788899987 367899999 9984333 2467778889888
Q ss_pred hhCCC
Q 013704 320 IFRTD 324 (438)
Q Consensus 320 ~l~~~ 324 (438)
.+...
T Consensus 326 ~~~~s 330 (361)
T smart00763 326 LLRNS 330 (361)
T ss_pred HhccC
Confidence 88653
No 194
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=6.8e-07 Score=90.63 Aligned_cols=133 Identities=15% Similarity=0.204 Sum_probs=86.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC-------------------------ceEEEeccccccCCCC-----ChHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI-------------------------NPIMMSAGELESGNAG-----EPAKL 206 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~-------------------------~~i~vs~~~l~s~~~G-----e~~~~ 206 (438)
+.|..+||+||+|+|||++|+.+|+.+.. .++.++...-. .-.| -.-..
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 77899999999999999999999999642 12333321100 0001 12456
Q ss_pred HHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecC
Q 013704 207 IRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN 286 (438)
Q Consensus 207 ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN 286 (438)
||++.+.+...-......|++||+++.+-.. ..+.|+..++ +...++.+|++|+
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~-------------a~naLLk~LE-------------ep~~~~~~Ilvth 151 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNLQ-------------AANSLLKVLE-------------EPPPQVVFLLVSH 151 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCCHH-------------HHHHHHHHHH-------------hCcCCCEEEEEeC
Confidence 6776665532111455679999999988432 2244555555 2234567888999
Q ss_pred CCCCCCccccCCCcceEEEe-cCCHHHHHHHHH
Q 013704 287 DFSTLYAPLIRDGRMEKFYW-APTREDRIGVCS 318 (438)
Q Consensus 287 ~~~~Ld~aLlR~GRfd~~i~-lP~~e~R~~Il~ 318 (438)
+++.+.+.+.+ |+..+.. .|+.++..+.+.
T Consensus 152 ~~~~ll~ti~S--Rc~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 152 AADKVLPTIKS--RCRKMVLPAPSHEEALAYLR 182 (325)
T ss_pred ChHhChHHHHH--HhhhhcCCCCCHHHHHHHHH
Confidence 99999999988 7755544 467777666664
No 195
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.52 E-value=4.2e-07 Score=83.03 Aligned_cols=118 Identities=16% Similarity=0.163 Sum_probs=75.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCC-----------------------ceEEEeccccccCCCCChHHHHHHHHH
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGI-----------------------NPIMMSAGELESGNAGEPAKLIRQRYR 212 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg~-----------------------~~i~vs~~~l~s~~~Ge~~~~ir~~f~ 212 (438)
.+.|..+||+||+|+||+++|.++|+.+-. .++.+....-.. .-.-..+|.+..
T Consensus 16 ~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~---~i~i~~ir~i~~ 92 (162)
T PF13177_consen 16 GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK---SIKIDQIREIIE 92 (162)
T ss_dssp TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS---SBSHHHHHHHHH
T ss_pred CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc---hhhHHHHHHHHH
Confidence 367889999999999999999999999422 123332221100 012345565555
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCC
Q 013704 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (438)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld 292 (438)
...........-|++|||+|.+.. ...+.|+..++ +...++.+|.+|+.++.|.
T Consensus 93 ~~~~~~~~~~~KviiI~~ad~l~~-------------~a~NaLLK~LE-------------epp~~~~fiL~t~~~~~il 146 (162)
T PF13177_consen 93 FLSLSPSEGKYKVIIIDEADKLTE-------------EAQNALLKTLE-------------EPPENTYFILITNNPSKIL 146 (162)
T ss_dssp HCTSS-TTSSSEEEEEETGGGS-H-------------HHHHHHHHHHH-------------STTTTEEEEEEES-GGGS-
T ss_pred HHHHHHhcCCceEEEeehHhhhhH-------------HHHHHHHHHhc-------------CCCCCEEEEEEECChHHCh
Confidence 432111145667999999998843 23466777565 6678889999999999999
Q ss_pred ccccCCCcceEE
Q 013704 293 APLIRDGRMEKF 304 (438)
Q Consensus 293 ~aLlR~GRfd~~ 304 (438)
+.+++ |+-.+
T Consensus 147 ~TI~S--Rc~~i 156 (162)
T PF13177_consen 147 PTIRS--RCQVI 156 (162)
T ss_dssp HHHHT--TSEEE
T ss_pred HHHHh--hceEE
Confidence 99999 87543
No 196
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=1.9e-06 Score=87.05 Aligned_cols=154 Identities=16% Similarity=0.191 Sum_probs=99.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc-----------------------eEEEeccccccCCCCChHHHHHHHHH
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------------------PIMMSAGELESGNAGEPAKLIRQRYR 212 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~-----------------------~i~vs~~~l~s~~~Ge~~~~ir~~f~ 212 (438)
.+.|..+||+||.|+||+.+|+++|+.+-.. ++.+.... .++. -....||++-+
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~--I~vdqiR~l~~ 98 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKS--ITVEQIRQCNR 98 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCc--CCHHHHHHHHH
Confidence 4678899999999999999999999985321 12221110 0000 12345565544
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCC
Q 013704 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (438)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld 292 (438)
.+......+.-.|++||++|.+.. ...+.|+..++ +...++.+|.+|+.++.|-
T Consensus 99 ~~~~~~~~~~~kV~iI~~ae~m~~-------------~AaNaLLKtLE-------------EPp~~t~fiL~t~~~~~lL 152 (319)
T PRK06090 99 LAQESSQLNGYRLFVIEPADAMNE-------------SASNALLKTLE-------------EPAPNCLFLLVTHNQKRLL 152 (319)
T ss_pred HHhhCcccCCceEEEecchhhhCH-------------HHHHHHHHHhc-------------CCCCCeEEEEEECChhhCh
Confidence 432111244557999999998842 23356777565 6678889999999999999
Q ss_pred ccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCCCC-HHHHHHHHccCCcchhH
Q 013704 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVP-KEDIVKLVDTFPGQSID 344 (438)
Q Consensus 293 ~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~v~-~~~la~l~~~~sgadi~ 344 (438)
|.+++ |+..+.. .|+.++..+.+... +++ ...+..++.|-++..++
T Consensus 153 pTI~S--RCq~~~~~~~~~~~~~~~L~~~----~~~~~~~~l~l~~G~p~~A~~ 200 (319)
T PRK06090 153 PTIVS--RCQQWVVTPPSTAQAMQWLKGQ----GITVPAYALKLNMGSPLKTLA 200 (319)
T ss_pred HHHHh--cceeEeCCCCCHHHHHHHHHHc----CCchHHHHHHHcCCCHHHHHH
Confidence 99999 8866555 47888877777542 232 22445555655554444
No 197
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.51 E-value=6.7e-07 Score=77.23 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=46.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh--------CCceEEEecccccc--------------CCCC-ChHHHHHHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM--------GINPIMMSAGELES--------------GNAG-EPAKLIRQRYREA 214 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l--------g~~~i~vs~~~l~s--------------~~~G-e~~~~ir~~f~~A 214 (438)
....++++||||+|||++++.+++.+ ..+++.+.++...+ .... .+... +++..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~---l~~~~ 79 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDE---LRSLL 79 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHH---HHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHH---HHHHH
Confidence 34678999999999999999999997 67778777643321 0111 11222 22222
Q ss_pred HHHHHhCCceeEEeccccccc
Q 013704 215 ADIIKKGKMCCLFINDLDAGA 235 (438)
Q Consensus 215 ~~~~~~~~p~ILfIDEiD~l~ 235 (438)
.+.++.....+|+|||+|.+.
T Consensus 80 ~~~l~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHHHHHCTEEEEEEETTHHHH
T ss_pred HHHHHhcCCeEEEEeChHhcC
Confidence 223335556799999999975
No 198
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.49 E-value=2.5e-06 Score=85.07 Aligned_cols=204 Identities=15% Similarity=0.153 Sum_probs=115.7
Q ss_pred HHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCceEEEeccccccC------------CCCCh
Q 013704 145 HITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG------------NAGEP 203 (438)
Q Consensus 145 ~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~l---------g~~~i~vs~~~l~s~------------~~Ge~ 203 (438)
.....++..|....+.++||+|++|.|||++++..+... .+|++.+.++.-.+. ....+
T Consensus 47 ~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~ 126 (302)
T PF05621_consen 47 DRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRP 126 (302)
T ss_pred HHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCC
Confidence 334556667777777899999999999999999999873 246666655321110 00001
Q ss_pred HHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEE
Q 013704 204 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283 (438)
Q Consensus 204 ~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~ 283 (438)
...+......+..+++...+-+|+|||++.++.... ...+.+.+.|..|.+ .-++++|+
T Consensus 127 ~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~------~~qr~~Ln~LK~L~N---------------eL~ipiV~ 185 (302)
T PF05621_consen 127 RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY------RKQREFLNALKFLGN---------------ELQIPIVG 185 (302)
T ss_pred CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH------HHHHHHHHHHHHHhh---------------ccCCCeEE
Confidence 112233344445566789999999999998754321 112445555554433 45677777
Q ss_pred ecC----CCCCCCccccCCCcceEEEe---cCCHHHHHHHHHhhhC------CCCCCHHHHHHHHccCCcchhHHHHHHH
Q 013704 284 TGN----DFSTLYAPLIRDGRMEKFYW---APTREDRIGVCSGIFR------TDNVPKEDIVKLVDTFPGQSIDFFGALR 350 (438)
Q Consensus 284 TTN----~~~~Ld~aLlR~GRfd~~i~---lP~~e~R~~Il~~~l~------~~~v~~~~la~l~~~~sgadi~~~~al~ 350 (438)
.+. +.=.-|+.|.+ ||+.+.. -++.+- ..++..+-. ..++...+++...-..++.-|.-+..+-
T Consensus 186 vGt~~A~~al~~D~QLa~--RF~~~~Lp~W~~d~ef-~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll 262 (302)
T PF05621_consen 186 VGTREAYRALRTDPQLAS--RFEPFELPRWELDEEF-RRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLL 262 (302)
T ss_pred eccHHHHHHhccCHHHHh--ccCCccCCCCCCCcHH-HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHH
Confidence 552 12234677877 8877555 244443 334443322 3456666666555555555554332444
Q ss_pred HhhhhHHHHHHHhHHhHHHHHHHHhcC
Q 013704 351 ARVYDDEVRKWISEVGIERIGKRLVNS 377 (438)
Q Consensus 351 ~~~~~~air~~i~~~~~e~i~~~~~~~ 377 (438)
..++..||+. |-|.+..+.+..
T Consensus 263 ~~aA~~AI~s-----G~E~It~~~l~~ 284 (302)
T PF05621_consen 263 NAAAIAAIRS-----GEERITREILDK 284 (302)
T ss_pred HHHHHHHHhc-----CCceecHHHHhh
Confidence 5555555554 334444444443
No 199
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.47 E-value=5e-07 Score=91.75 Aligned_cols=133 Identities=17% Similarity=0.213 Sum_probs=80.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCCCCChHHHHHHHHHHHH-----------HHHHhCCce
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 224 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~-----------~~~~~~~p~ 224 (438)
...|||+|++||||+++|++|.... +.+|+.++|+.+... ..-..+|.... ..+......
T Consensus 22 ~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~------~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gG 95 (329)
T TIGR02974 22 DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSEN------LLDSELFGHEAGAFTGAQKRHQGRFERADGG 95 (329)
T ss_pred CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChH------HHHHHHhccccccccCcccccCCchhhCCCC
Confidence 4569999999999999999998764 468999999866421 11112222110 012244578
Q ss_pred eEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCC-------CCCCccccC
Q 013704 225 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-------STLYAPLIR 297 (438)
Q Consensus 225 ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~-------~~Ld~aLlR 297 (438)
.|||||||.+.. .++..|+.++++-....+.+. .....++.||+|||.. ..+.+.|..
T Consensus 96 tL~Ldei~~L~~-------------~~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~ 160 (329)
T TIGR02974 96 TLFLDELATASL-------------LVQEKLLRVIEYGEFERVGGS--QTLQVDVRLVCATNADLPALAAEGRFRADLLD 160 (329)
T ss_pred EEEeCChHhCCH-------------HHHHHHHHHHHcCcEEecCCC--ceeccceEEEEechhhHHHHhhcCchHHHHHH
Confidence 999999998843 233556666653222222222 1234678899998753 233444555
Q ss_pred CCcce-EEEecCCHHHHH
Q 013704 298 DGRME-KFYWAPTREDRI 314 (438)
Q Consensus 298 ~GRfd-~~i~lP~~e~R~ 314 (438)
|+. ..+.+|...+|.
T Consensus 161 --rl~~~~i~lPpLReR~ 176 (329)
T TIGR02974 161 --RLAFDVITLPPLRERQ 176 (329)
T ss_pred --HhcchhcCCCchhhhh
Confidence 553 345578766663
No 200
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.46 E-value=2.6e-06 Score=82.04 Aligned_cols=151 Identities=13% Similarity=0.165 Sum_probs=94.2
Q ss_pred HHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhC
Q 013704 145 HITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG 221 (438)
Q Consensus 145 ~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~ 221 (438)
.+++|-.......+..++||||..|||||+|++|+-++. |..++.|+..++.. +-.+++.-+ ...
T Consensus 71 ~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~---------Lp~l~~~Lr---~~~ 138 (287)
T COG2607 71 ALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLAT---------LPDLVELLR---ARP 138 (287)
T ss_pred HHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhh---------HHHHHHHHh---cCC
Confidence 334444433344567899999999999999999999984 66788888776651 222333221 156
Q ss_pred CceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccC----
Q 013704 222 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR---- 297 (438)
Q Consensus 222 ~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR---- 297 (438)
..-|||.||+- .. .++. -...|-..+ +|. .+....+|+|-+|+|+...|++-+..
T Consensus 139 ~kFIlFcDDLS-----Fe---~gd~----~yK~LKs~L--------eG~-ve~rP~NVl~YATSNRRHLl~e~~~dn~~~ 197 (287)
T COG2607 139 EKFILFCDDLS-----FE---EGDD----AYKALKSAL--------EGG-VEGRPANVLFYATSNRRHLLPEDMKDNEGS 197 (287)
T ss_pred ceEEEEecCCC-----CC---CCch----HHHHHHHHh--------cCC-cccCCCeEEEEEecCCcccccHhhhhCCCc
Confidence 77899999872 11 1111 112333323 333 23456889999999998877754322
Q ss_pred ----------------CCcceEEEec--CCHHHHHHHHHhhhCCCCCCH
Q 013704 298 ----------------DGRMEKFYWA--PTREDRIGVCSGIFRTDNVPK 328 (438)
Q Consensus 298 ----------------~GRfd~~i~l--P~~e~R~~Il~~~l~~~~v~~ 328 (438)
.-||..++-+ |+.++=+.|+..+.+..+++.
T Consensus 198 ~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 198 TGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred ccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 1266666653 567777777777776655554
No 201
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.39 E-value=8.3e-07 Score=87.72 Aligned_cols=106 Identities=17% Similarity=0.254 Sum_probs=70.1
Q ss_pred ccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCceEEEeccccccCCC
Q 013704 126 DNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNA 200 (438)
Q Consensus 126 ~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~l-----g~~~i~vs~~~l~s~~~ 200 (438)
++.+.|+|+ +.+.+++..|.++..++.++|..+-|||++||||.+.++.||+.+ ..+++..-.+.+.-...
T Consensus 81 ~~~lfGQHl----a~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~ 156 (344)
T KOG2170|consen 81 ARALFGQHL----AKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHA 156 (344)
T ss_pred HHHhhchHH----HHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCCh
Confidence 444455443 446788889999999999999999999999999999999999984 23333322222221111
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceeEEeccccccc
Q 013704 201 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 235 (438)
Q Consensus 201 Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~ 235 (438)
..-+..-.++-+..++.+..++.+|+++||+|++-
T Consensus 157 ~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 157 SKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcC
Confidence 11111112233333344458999999999999884
No 202
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.39 E-value=3.3e-06 Score=74.00 Aligned_cols=90 Identities=20% Similarity=0.206 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHH-----hCCceEEEeccccccCCCCChHHHHHHHHHH
Q 013704 139 MDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAK-----MGINPIMMSAGELESGNAGEPAKLIRQRYRE 213 (438)
Q Consensus 139 ~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~-----lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~ 213 (438)
.-+.++...+.++..++.++|+.+.|+||||||||++++.||+. ++.+++..-.+...-.....-...-.++-+.
T Consensus 33 a~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~ 112 (127)
T PF06309_consen 33 AVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSW 112 (127)
T ss_pred HHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCceeeecccccCCCchHHHHHHHHHHHH
Confidence 33566777788888888899999999999999999999999999 3555655433333222222222233333333
Q ss_pred HHHHHHhCCceeEEe
Q 013704 214 AADIIKKGKMCCLFI 228 (438)
Q Consensus 214 A~~~~~~~~p~ILfI 228 (438)
..+.+..+..++++|
T Consensus 113 I~~~v~~C~rslFIF 127 (127)
T PF06309_consen 113 IRGNVSRCPRSLFIF 127 (127)
T ss_pred HHHHHHhCCcCeeeC
Confidence 334444555555543
No 203
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.38 E-value=1.3e-07 Score=93.66 Aligned_cols=143 Identities=17% Similarity=0.241 Sum_probs=83.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCce---EEEeccccccCCCCChHHHHHHHHHHHHHHH-------HhCCceeEEe
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINP---IMMSAGELESGNAGEPAKLIRQRYREAADII-------KKGKMCCLFI 228 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~---i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~-------~~~~p~ILfI 228 (438)
...+||+||+|||||.+++..-..+.-.- ..+..+.. .+...++.+.+...+.. ..++.+|+||
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fi 106 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFI 106 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEEEE
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEe
Confidence 35799999999999999988777654332 22332211 12233333222110000 0346679999
Q ss_pred ccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCC-----CCCceEEEecCCCC---CCCccccCCCc
Q 013704 229 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE-----NPRVPIIVTGNDFS---TLYAPLIRDGR 300 (438)
Q Consensus 229 DEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~-----~~~v~VI~TTN~~~---~Ld~aLlR~GR 300 (438)
||+..-.....+ + +....+|.++++ ..|.|.... ..++-+|+|+|... .|++.|+| .
T Consensus 107 DDlN~p~~d~yg-t------q~~iElLRQ~i~------~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~ 171 (272)
T PF12775_consen 107 DDLNMPQPDKYG-T------QPPIELLRQLID------YGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--H 171 (272)
T ss_dssp ETTT-S---TTS---------HHHHHHHHHHH------CSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--T
T ss_pred cccCCCCCCCCC-C------cCHHHHHHHHHH------hcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--h
Confidence 999876555432 2 356678888777 456665432 25788888887532 47777888 7
Q ss_pred ceEEEe-cCCHHHHHHHHHhhhC
Q 013704 301 MEKFYW-APTREDRIGVCSGIFR 322 (438)
Q Consensus 301 fd~~i~-lP~~e~R~~Il~~~l~ 322 (438)
|..... .|+.+.-..|+..++.
T Consensus 172 f~i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 172 FNILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp EEEEE----TCCHHHHHHHHHHH
T ss_pred eEEEEecCCChHHHHHHHHHHHh
Confidence 754443 5999988888876554
No 204
>PF13173 AAA_14: AAA domain
Probab=98.36 E-value=1.9e-06 Score=75.23 Aligned_cols=69 Identities=16% Similarity=0.218 Sum_probs=45.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC--CceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg--~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l 234 (438)
+.++|+||.|||||++++.+++.+. -++++++..+.......... +.+.|.+.. ...+.+|||||+..+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELI----KPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhh----ccCCcEEEEehhhhh
Confidence 5689999999999999999999876 67778877654421000000 111221111 236799999999877
No 205
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.34 E-value=1.9e-06 Score=87.39 Aligned_cols=133 Identities=17% Similarity=0.189 Sum_probs=80.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCCCCChHHHHHHHHHHH-----------HHHHHhCCce
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA-----------ADIIKKGKMC 224 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A-----------~~~~~~~~p~ 224 (438)
+..|||+|++||||+++|++|-... +.+|+.++|..+... ..-..+|... ...+......
T Consensus 29 ~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~------~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gG 102 (326)
T PRK11608 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN------LLDSELFGHEAGAFTGAQKRHPGRFERADGG 102 (326)
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHH------HHHHHHccccccccCCcccccCCchhccCCC
Confidence 4569999999999999999998774 468999999876311 1111222211 0011244578
Q ss_pred eEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCC-------CCCCccccC
Q 013704 225 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-------STLYAPLIR 297 (438)
Q Consensus 225 ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~-------~~Ld~aLlR 297 (438)
.|||||+|.+... ++..|++++++-.....++. .....++.||+||+.. ..+.+.|..
T Consensus 103 tL~l~~i~~L~~~-------------~Q~~L~~~l~~~~~~~~g~~--~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~ 167 (326)
T PRK11608 103 TLFLDELATAPML-------------VQEKLLRVIEYGELERVGGS--QPLQVNVRLVCATNADLPAMVAEGKFRADLLD 167 (326)
T ss_pred eEEeCChhhCCHH-------------HHHHHHHHHhcCcEEeCCCC--ceeeccEEEEEeCchhHHHHHHcCCchHHHHH
Confidence 8999999988532 33556666652211111111 1122468899988763 245555665
Q ss_pred CCcc-eEEEecCCHHHHH
Q 013704 298 DGRM-EKFYWAPTREDRI 314 (438)
Q Consensus 298 ~GRf-d~~i~lP~~e~R~ 314 (438)
|| ...+.+|...+|.
T Consensus 168 --~l~~~~i~lPpLReR~ 183 (326)
T PRK11608 168 --RLAFDVVQLPPLRERQ 183 (326)
T ss_pred --hcCCCEEECCChhhhh
Confidence 66 3466688777763
No 206
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.33 E-value=3.1e-06 Score=74.79 Aligned_cols=114 Identities=14% Similarity=0.138 Sum_probs=63.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCceEEEecccccc----------------------CCCCChHHHHHHHHHHHHH
Q 013704 162 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES----------------------GNAGEPAKLIRQRYREAAD 216 (438)
Q Consensus 162 lLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s----------------------~~~Ge~~~~ir~~f~~A~~ 216 (438)
++|+||||+|||+++..++... +.++++++...... .+.... ........+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 79 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDP--AAARLLSKAER 79 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCC--cHHHHHHHHHH
Confidence 6899999999999999999986 45666666543221 111111 01111112222
Q ss_pred HHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCC
Q 013704 217 IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTL 291 (438)
Q Consensus 217 ~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~L 291 (438)
.+....|.+|+|||+..+...... ......+.+...+.++.+ + ....++.+|++++.....
T Consensus 80 ~~~~~~~~~lviDe~~~~~~~~~~--~~~~~~~~~~~~l~~l~~----------~--~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 80 LRERGGDDLIILDELTRLVRALRE--IREGYPGELDEELRELLE----------R--ARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHhCCCCEEEEEEcHHHHHHHHHH--HHhcCChHHHHHHHHHHH----------H--HhcCCceEEEEEecCCcc
Confidence 334788999999999988654210 000111223334444333 1 123577888888766543
No 207
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.32 E-value=1.4e-06 Score=83.42 Aligned_cols=135 Identities=13% Similarity=0.161 Sum_probs=76.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh-CC----ceEEEeccccccCCCC-ChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKM-GI----NPIMMSAGELESGNAG-EPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~l-g~----~~i~vs~~~l~s~~~G-e~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~ 233 (438)
.+++|.||||||||+-+.++|.++ |- -++.+++++=. | +..++--+.|..-+-.+-.+.-.|+++||+|+
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR----GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADS 124 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER----GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADS 124 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccc----ccHHHHHHHHHHHHhhccCCCCceeEEEeeccch
Confidence 368999999999999999999994 42 24556655322 2 11122223333222111135556999999998
Q ss_pred cccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe-cCCHHH
Q 013704 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRED 312 (438)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~-lP~~e~ 312 (438)
+... .| ....-.|+ -+.....++.+||....|-+|+.+ |+-..-+ --+.++
T Consensus 125 MT~g----AQ------QAlRRtME----------------iyS~ttRFalaCN~s~KIiEPIQS--RCAiLRysklsd~q 176 (333)
T KOG0991|consen 125 MTAG----AQ------QALRRTME----------------IYSNTTRFALACNQSEKIIEPIQS--RCAILRYSKLSDQQ 176 (333)
T ss_pred hhhH----HH------HHHHHHHH----------------HHcccchhhhhhcchhhhhhhHHh--hhHhhhhcccCHHH
Confidence 8432 12 22222233 223455688899999999999988 6544333 233333
Q ss_pred HHHHHHhhhCCCCC
Q 013704 313 RIGVCSGIFRTDNV 326 (438)
Q Consensus 313 R~~Il~~~l~~~~v 326 (438)
.+.-+..+.+.+++
T Consensus 177 iL~Rl~~v~k~Ekv 190 (333)
T KOG0991|consen 177 ILKRLLEVAKAEKV 190 (333)
T ss_pred HHHHHHHHHHHhCC
Confidence 33333333333333
No 208
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.31 E-value=1.7e-05 Score=77.90 Aligned_cols=153 Identities=18% Similarity=0.282 Sum_probs=96.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh-C--CceEEEec-------------cccccC--------CCCChHH-HHHHHHHHH
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKM-G--INPIMMSA-------------GELESG--------NAGEPAK-LIRQRYREA 214 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~l-g--~~~i~vs~-------------~~l~s~--------~~Ge~~~-~ir~~f~~A 214 (438)
.++|+|||+|+||-+.+-|+-+++ | ++=+.+.. +.+.|. -+|...+ .|+++.++.
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKev 114 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEV 114 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHH
Confidence 479999999999999999999984 2 21111110 111111 2343333 455666654
Q ss_pred HHHHH-----hCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC
Q 013704 215 ADIIK-----KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS 289 (438)
Q Consensus 215 ~~~~~-----~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~ 289 (438)
.+... +..-.+++|.|+|.+... .| ..|..-+ +.+...+.+|..+|..+
T Consensus 115 AQt~qie~~~qr~fKvvvi~ead~LT~d----AQ---------~aLRRTM-------------EkYs~~~RlIl~cns~S 168 (351)
T KOG2035|consen 115 AQTQQIETQGQRPFKVVVINEADELTRD----AQ---------HALRRTM-------------EKYSSNCRLILVCNSTS 168 (351)
T ss_pred HhhcchhhccccceEEEEEechHhhhHH----HH---------HHHHHHH-------------HHHhcCceEEEEecCcc
Confidence 42211 222358999999988533 12 3333311 14567889999999999
Q ss_pred CCCccccCCCcc-eEEEecCCHHHHHHHHHhhhCCCCCCH--HHHHHHHccCCc
Q 013704 290 TLYAPLIRDGRM-EKFYWAPTREDRIGVCSGIFRTDNVPK--EDIVKLVDTFPG 340 (438)
Q Consensus 290 ~Ld~aLlR~GRf-d~~i~lP~~e~R~~Il~~~l~~~~v~~--~~la~l~~~~sg 340 (438)
.+-+|+++ |. -..+..|+.++...++...+.++++.+ +-+.++++...|
T Consensus 169 riIepIrS--RCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~ 220 (351)
T KOG2035|consen 169 RIIEPIRS--RCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNR 220 (351)
T ss_pred cchhHHhh--heeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcc
Confidence 99999998 54 222335999999999999998876653 445666665543
No 209
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.30 E-value=3.2e-06 Score=91.09 Aligned_cols=133 Identities=14% Similarity=0.214 Sum_probs=78.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH-----------hCCceEEEeccccccCCCCChHHHHHHHHHH-------HH----
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAK-----------MGINPIMMSAGELESGNAGEPAKLIRQRYRE-------AA---- 215 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~-----------lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~-------A~---- 215 (438)
.+..|||+|++||||+++|++|-.. .+.||+.++|+.+.... .-..+|.. +.
T Consensus 241 s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~l------leseLFG~~~gaftga~~~~~ 314 (538)
T PRK15424 241 SSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESL------LEAELFGYEEGAFTGSRRGGR 314 (538)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhh------HHHHhcCCccccccCcccccc
Confidence 3457999999999999999999887 45689999998764211 11112221 10
Q ss_pred -HHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCcc
Q 013704 216 -DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 294 (438)
Q Consensus 216 -~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~a 294 (438)
.+++......||||||+.+-. .++..|+.++++-+...+.+. .....++.||+|||..- . .
T Consensus 315 ~Gl~e~A~gGTLfLdeI~~Lp~-------------~~Q~kLl~~L~e~~~~r~G~~--~~~~~dvRiIaat~~~L--~-~ 376 (538)
T PRK15424 315 AGLFEIAHGGTLFLDEIGEMPL-------------PLQTRLLRVLEEKEVTRVGGH--QPVPVDVRVISATHCDL--E-E 376 (538)
T ss_pred CCchhccCCCEEEEcChHhCCH-------------HHHHHHHhhhhcCeEEecCCC--ceeccceEEEEecCCCH--H-H
Confidence 012234467899999998843 233556666653222222222 12234678999987642 1 2
Q ss_pred ccCCCcceE---------EEecCCHHHHH
Q 013704 295 LIRDGRMEK---------FYWAPTREDRI 314 (438)
Q Consensus 295 LlR~GRfd~---------~i~lP~~e~R~ 314 (438)
+...|+|.. .+.+|...+|.
T Consensus 377 ~v~~g~Fr~dL~yrL~~~~I~lPPLReR~ 405 (538)
T PRK15424 377 DVRQGRFRRDLFYRLSILRLQLPPLRERV 405 (538)
T ss_pred HHhcccchHHHHHHhcCCeecCCChhhch
Confidence 333444442 33467766663
No 210
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.30 E-value=3.6e-06 Score=90.81 Aligned_cols=158 Identities=13% Similarity=0.196 Sum_probs=90.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCCCCChHHHH-HHHHHHHH-----------HHHHhCCc
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLI-RQRYREAA-----------DIIKKGKM 223 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~~Ge~~~~i-r~~f~~A~-----------~~~~~~~p 223 (438)
...|||+|++|||||++|++|.... +.+|+.++|..+.. ..+ ..+|.... ..+.....
T Consensus 219 ~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~-------~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 291 (534)
T TIGR01817 219 NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE-------TLLESELFGHEKGAFTGAIAQRKGRFELADG 291 (534)
T ss_pred CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH-------HHHHHHHcCCCCCccCCCCcCCCCcccccCC
Confidence 4569999999999999999999884 56999999987642 111 12221110 00113457
Q ss_pred eeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcc--
Q 013704 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM-- 301 (438)
Q Consensus 224 ~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRf-- 301 (438)
..|||||+|.+... ++..|++++++-......+. .....++.+|+||+..- . .+...|+|
T Consensus 292 GtL~ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~~~~~--~~~~~~~riI~~s~~~l--~-~~~~~~~f~~ 353 (534)
T TIGR01817 292 GTLFLDEIGEISPA-------------FQAKLLRVLQEGEFERVGGN--RTLKVDVRLVAATNRDL--E-EAVAKGEFRA 353 (534)
T ss_pred CeEEEechhhCCHH-------------HHHHHHHHHhcCcEEECCCC--ceEeecEEEEEeCCCCH--H-HHHHcCCCCH
Confidence 79999999988432 33556666653221111211 11124678999887541 1 12233444
Q ss_pred ------e-EEEecCCHHHH----HHHHHhhhC--------CCCCCHHHHHHHHcc-CCcc
Q 013704 302 ------E-KFYWAPTREDR----IGVCSGIFR--------TDNVPKEDIVKLVDT-FPGQ 341 (438)
Q Consensus 302 ------d-~~i~lP~~e~R----~~Il~~~l~--------~~~v~~~~la~l~~~-~sga 341 (438)
. ..+.+|...+| ..|++.++. ...++.+.+..+... |+|-
T Consensus 354 ~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGN 413 (534)
T TIGR01817 354 DLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGN 413 (534)
T ss_pred HHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCCh
Confidence 2 24557765555 344444432 134666677766655 5664
No 211
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.29 E-value=9.3e-06 Score=87.44 Aligned_cols=187 Identities=14% Similarity=0.190 Sum_probs=101.5
Q ss_pred ccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccC
Q 013704 122 QYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG 198 (438)
Q Consensus 122 ~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~ 198 (438)
.+.|+++++. ++. +.++. +.++.... ....|||+|++||||+++|++|-... ..+|+.++|..+...
T Consensus 200 ~~~f~~~ig~---s~~-~~~~~-~~~~~~A~-----~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~ 269 (520)
T PRK10820 200 DSAFSQIVAV---SPK-MRQVV-EQARKLAM-----LDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDD 269 (520)
T ss_pred cccccceeEC---CHH-HHHHH-HHHHHHhC-----CCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHH
Confidence 3566777664 333 22332 23333322 23349999999999999999987663 368999999876421
Q ss_pred CCCChHHHHHHHHHHH-----------HHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCcccc
Q 013704 199 NAGEPAKLIRQRYREA-----------ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 267 (438)
Q Consensus 199 ~~Ge~~~~ir~~f~~A-----------~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~l 267 (438)
..-..+|..+ ..+++......|||||+|.+... ++..|++++.+.+.-.+
T Consensus 270 ------~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~ 330 (520)
T PRK10820 270 ------VVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPR-------------MQAKLLRFLNDGTFRRV 330 (520)
T ss_pred ------HHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHH-------------HHHHHHHHHhcCCcccC
Confidence 0111122110 00112344788999999988542 23455665553221111
Q ss_pred CCccccCCCCCceEEEecCCCC-------CCCccccCCCcce-EEEecCCHHHHH-H---HHHhhhC---------CCCC
Q 013704 268 PGMYNQEENPRVPIIVTGNDFS-------TLYAPLIRDGRME-KFYWAPTREDRI-G---VCSGIFR---------TDNV 326 (438)
Q Consensus 268 dg~~~~~~~~~v~VI~TTN~~~-------~Ld~aLlR~GRfd-~~i~lP~~e~R~-~---Il~~~l~---------~~~v 326 (438)
.+. .....++.||+||+..- .+.+.|.. |+. ..+.+|...+|. . +++.++. ...+
T Consensus 331 g~~--~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~--rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~l 406 (520)
T PRK10820 331 GED--HEVHVDVRVICATQKNLVELVQKGEFREDLYY--RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKL 406 (520)
T ss_pred CCC--cceeeeeEEEEecCCCHHHHHHcCCccHHHHh--hcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCc
Confidence 111 12234678999887642 23333444 543 344477766664 2 2223322 1256
Q ss_pred CHHHHHHHHcc-CCcc
Q 013704 327 PKEDIVKLVDT-FPGQ 341 (438)
Q Consensus 327 ~~~~la~l~~~-~sga 341 (438)
+.+.+..+... |||-
T Consensus 407 s~~a~~~L~~y~WPGN 422 (520)
T PRK10820 407 AADLNTVLTRYGWPGN 422 (520)
T ss_pred CHHHHHHHhcCCCCCH
Confidence 77777777765 6663
No 212
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.29 E-value=1.4e-06 Score=92.99 Aligned_cols=130 Identities=14% Similarity=0.092 Sum_probs=72.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCC----------------------------ceEEEeccccccCCCCChHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGI----------------------------NPIMMSAGELESGNAGEPAKLIRQ 209 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~----------------------------~~i~vs~~~l~s~~~Ge~~~~ir~ 209 (438)
....++|.||||||||+++++++..+.- ||.....+.......|.....
T Consensus 210 ~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~--- 286 (499)
T TIGR00368 210 GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIP--- 286 (499)
T ss_pred CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhhCCcccc---
Confidence 3467999999999999999999975311 111111110000001110000
Q ss_pred HHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCC-ccccCCccccCCCCCceEEEecCCC
Q 013704 210 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-NVQLPGMYNQEENPRVPIIVTGNDF 288 (438)
Q Consensus 210 ~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~-~v~ldg~~~~~~~~~v~VI~TTN~~ 288 (438)
+. ..+......+|||||++.+.. .+...|++.+++.. .+.-.|. ......++.+|+|+|.-
T Consensus 287 ---~p-G~i~lA~~GvLfLDEi~e~~~-------------~~~~~L~~~LE~~~v~i~r~g~-~~~~pa~frlIaa~Npc 348 (499)
T TIGR00368 287 ---LP-GEISLAHNGVLFLDELPEFKR-------------SVLDALREPIEDGSISISRASA-KIFYPARFQLVAAMNPC 348 (499)
T ss_pred ---ch-hhhhccCCCeEecCChhhCCH-------------HHHHHHHHHHHcCcEEEEecCc-ceeccCCeEEEEecCCc
Confidence 00 011144568999999986532 44566776665321 1111121 01234678899999852
Q ss_pred -----C------------------CCCccccCCCcceEEEecCCH
Q 013704 289 -----S------------------TLYAPLIRDGRMEKFYWAPTR 310 (438)
Q Consensus 289 -----~------------------~Ld~aLlR~GRfd~~i~lP~~ 310 (438)
. .|..+|+. |||..+.+|..
T Consensus 349 pcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~~ 391 (499)
T TIGR00368 349 PCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPLL 391 (499)
T ss_pred ccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcCC
Confidence 1 58889999 99999997543
No 213
>PHA00729 NTP-binding motif containing protein
Probab=98.25 E-value=1.9e-06 Score=82.91 Aligned_cols=27 Identities=22% Similarity=0.146 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCC
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGI 185 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~ 185 (438)
...++|+|+||||||++|.+|++.++.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~~ 43 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVFW 43 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 358999999999999999999999763
No 214
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.24 E-value=4.7e-06 Score=70.73 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q 013704 162 LGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 162 lLL~GPPGtGKT~lA~aIA~~lg 184 (438)
|.||||||+|||++|+.+|+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998864
No 215
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.24 E-value=6.6e-06 Score=84.62 Aligned_cols=31 Identities=29% Similarity=0.555 Sum_probs=27.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGI 185 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~ 185 (438)
....|+|+.||||+|+|||+|.-+....+..
T Consensus 58 ~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 58 PPPPPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred cCCCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 4567999999999999999999999998765
No 216
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.23 E-value=4.7e-06 Score=89.45 Aligned_cols=161 Identities=14% Similarity=0.158 Sum_probs=91.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCCCCChHHHHHHHHHHHH-----------HHHHhCCc
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKM 223 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~-----------~~~~~~~p 223 (438)
.+..|||+|++||||+++|++|.... +.+|+.++|..+.... .-..+|.... ...+....
T Consensus 209 ~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~------~e~~lfG~~~g~~~ga~~~~~g~~~~a~g 282 (509)
T PRK05022 209 SDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESL------AESELFGHVKGAFTGAISNRSGKFELADG 282 (509)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHH------HHHHhcCccccccCCCcccCCcchhhcCC
Confidence 35679999999999999999999884 4689999998764211 0111222100 01124457
Q ss_pred eeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC-------CCCcccc
Q 013704 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-------TLYAPLI 296 (438)
Q Consensus 224 ~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~-------~Ld~aLl 296 (438)
..|||||||.+... ++..|+.++++-....+.+. .....++.||+|||..- .+.+.|.
T Consensus 283 GtL~ldeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~ 347 (509)
T PRK05022 283 GTLFLDEIGELPLA-------------LQAKLLRVLQYGEIQRVGSD--RSLRVDVRVIAATNRDLREEVRAGRFRADLY 347 (509)
T ss_pred CEEEecChhhCCHH-------------HHHHHHHHHhcCCEeeCCCC--cceecceEEEEecCCCHHHHHHcCCccHHHH
Confidence 78999999988532 33556666653222222221 12335788999998642 1223333
Q ss_pred CCCcceE-EEecCCHHHHH----HHHHhhhC---------CCCCCHHHHHHHHc-cCCcc
Q 013704 297 RDGRMEK-FYWAPTREDRI----GVCSGIFR---------TDNVPKEDIVKLVD-TFPGQ 341 (438)
Q Consensus 297 R~GRfd~-~i~lP~~e~R~----~Il~~~l~---------~~~v~~~~la~l~~-~~sga 341 (438)
. |+.. .+.+|...+|. .+++.++. ...++.+.+..+.. .|||-
T Consensus 348 ~--rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGN 405 (509)
T PRK05022 348 H--RLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGN 405 (509)
T ss_pred h--cccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCc
Confidence 2 3332 35578766663 22332222 13456666666554 45564
No 217
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.23 E-value=4.3e-06 Score=92.07 Aligned_cols=158 Identities=15% Similarity=0.187 Sum_probs=90.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCCCCChHHHHHHHHHHH---H-----HHHHhCCceeEE
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA---A-----DIIKKGKMCCLF 227 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A---~-----~~~~~~~p~ILf 227 (438)
...|||+|++||||+++|++|.+.. +.+|+.++|..+.. +..-.++|... . ..++......||
T Consensus 348 ~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~------~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ 421 (638)
T PRK11388 348 SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD------EALAEEFLGSDRTDSENGRLSKFELAHGGTLF 421 (638)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh------HHHHHHhcCCCCcCccCCCCCceeECCCCEEE
Confidence 3459999999999999999999875 46899999986641 11112233211 0 011134578999
Q ss_pred eccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcc------
Q 013704 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM------ 301 (438)
Q Consensus 228 IDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRf------ 301 (438)
||||+.+-.. ++..|+.++++.....+++. ....-++.||+|||..- ..+...|+|
T Consensus 422 ldei~~l~~~-------------~Q~~Ll~~l~~~~~~~~~~~--~~~~~~~riI~~t~~~l---~~~~~~~~f~~dL~~ 483 (638)
T PRK11388 422 LEKVEYLSPE-------------LQSALLQVLKTGVITRLDSR--RLIPVDVRVIATTTADL---AMLVEQNRFSRQLYY 483 (638)
T ss_pred EcChhhCCHH-------------HHHHHHHHHhcCcEEeCCCC--ceEEeeEEEEEeccCCH---HHHHhcCCChHHHhh
Confidence 9999988432 33556666653222222221 01123677999988642 223334455
Q ss_pred ---eEEEecCCHHHHH----HHHHhhhC--------CCCCCHHHHHHHHcc-CCc
Q 013704 302 ---EKFYWAPTREDRI----GVCSGIFR--------TDNVPKEDIVKLVDT-FPG 340 (438)
Q Consensus 302 ---d~~i~lP~~e~R~----~Il~~~l~--------~~~v~~~~la~l~~~-~sg 340 (438)
...+.+|...+|. .+++.++. ...++.+.+..+... |+|
T Consensus 484 ~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPG 538 (638)
T PRK11388 484 ALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPG 538 (638)
T ss_pred hhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCC
Confidence 3445578777773 23333332 124566666666543 455
No 218
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.22 E-value=7.5e-06 Score=88.11 Aligned_cols=109 Identities=14% Similarity=0.230 Sum_probs=67.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCCCCChHHHHHHHHHH-------HH-----HHHHhCCc
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYRE-------AA-----DIIKKGKM 223 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~-------A~-----~~~~~~~p 223 (438)
+..|||+|++||||+++|++|.+.. +.||+.++|..+.... .-..+|.. |. .+++....
T Consensus 235 ~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l------leseLFG~~~gaftga~~~~~~Gl~e~A~g 308 (526)
T TIGR02329 235 DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL------LEAELFGYEEGAFTGARRGGRTGLIEAAHR 308 (526)
T ss_pred CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH------HHHHhcCCcccccccccccccccchhhcCC
Confidence 4679999999999999999998774 5689999998764211 11112221 10 11123446
Q ss_pred eeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCC
Q 013704 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 288 (438)
Q Consensus 224 ~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~ 288 (438)
..|||||++.+-. .++..|+.++.+-+...+.+. .....++.+|+|||..
T Consensus 309 GTLfLdeI~~Lp~-------------~~Q~~Ll~~L~~~~~~r~g~~--~~~~~dvRiIaat~~~ 358 (526)
T TIGR02329 309 GTLFLDEIGEMPL-------------PLQTRLLRVLEEREVVRVGGT--EPVPVDVRVVAATHCA 358 (526)
T ss_pred ceEEecChHhCCH-------------HHHHHHHHHHhcCcEEecCCC--ceeeecceEEeccCCC
Confidence 7899999998843 233556666653332222222 1223467899988764
No 219
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.22 E-value=1.4e-05 Score=85.81 Aligned_cols=38 Identities=18% Similarity=0.195 Sum_probs=32.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEec
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~ 192 (438)
+....+.+||+||||||||++++++|+++|..+.....
T Consensus 41 ~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~n 78 (519)
T PF03215_consen 41 GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWIN 78 (519)
T ss_pred cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecC
Confidence 33445789999999999999999999999998877543
No 220
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.21 E-value=1.7e-06 Score=96.93 Aligned_cols=140 Identities=12% Similarity=0.135 Sum_probs=79.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCC-------ceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccc
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGI-------NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDL 231 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~-------~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEi 231 (438)
...|||+|+||||||.+|+++++.... ++..+.+.........++... .+ ++- .+......+++|||+
T Consensus 492 dihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~---~l-e~G-aLvlAdgGtL~IDEi 566 (915)
T PTZ00111 492 IINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRA---MI-QPG-AVVLANGGVCCIDEL 566 (915)
T ss_pred CceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcc---cc-cCC-cEEEcCCCeEEecch
Confidence 348999999999999999999986432 222222111110000000000 00 000 111344579999999
Q ss_pred cccccCCCCCccccchhHHHHHHHHHhhcCCCcc--ccCCccccCCCCCceEEEecCCCC-------------CCCcccc
Q 013704 232 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV--QLPGMYNQEENPRVPIIVTGNDFS-------------TLYAPLI 296 (438)
Q Consensus 232 D~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v--~ldg~~~~~~~~~v~VI~TTN~~~-------------~Ld~aLl 296 (438)
|++... ....|+++++. ..+ .-.|. ......++.||+|+|... .|+++|+
T Consensus 567 dkms~~-------------~Q~aLlEaMEq-qtIsI~KaGi-~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LL 631 (915)
T PTZ00111 567 DKCHNE-------------SRLSLYEVMEQ-QTVTIAKAGI-VATLKAETAILASCNPINSRYNKNKAVIENINISPSLF 631 (915)
T ss_pred hhCCHH-------------HHHHHHHHHhC-CEEEEecCCc-ceecCCCeEEEEEcCCcccccCcccCcccccCCChHHh
Confidence 988432 23456665542 222 11232 112347889999999742 4789999
Q ss_pred CCCcceEEEec---CCHHHHHHHHHhh
Q 013704 297 RDGRMEKFYWA---PTREDRIGVCSGI 320 (438)
Q Consensus 297 R~GRfd~~i~l---P~~e~R~~Il~~~ 320 (438)
. |||.++.+ |+.+.-..|-+++
T Consensus 632 S--RFDLIf~l~D~~d~~~D~~lA~hI 656 (915)
T PTZ00111 632 T--RFDLIYLVLDHIDQDTDQLISLSI 656 (915)
T ss_pred h--hhcEEEEecCCCChHHHHHHHHHH
Confidence 9 99999883 7766655554433
No 221
>PF05729 NACHT: NACHT domain
Probab=98.20 E-value=1.7e-05 Score=70.54 Aligned_cols=142 Identities=22% Similarity=0.259 Sum_probs=75.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCC---------ceEEEeccccccCC-CCChHHHHHHHHHH--------HHHHHHhCC
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGI---------NPIMMSAGELESGN-AGEPAKLIRQRYRE--------AADIIKKGK 222 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~---------~~i~vs~~~l~s~~-~Ge~~~~ir~~f~~--------A~~~~~~~~ 222 (438)
-++|+|+||+|||++++.++..+.. -++..........- ...-...+...+.. .....+...
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 5889999999999999999988411 12334433332211 00111112111111 112233677
Q ss_pred ceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCC--CCccccCCCc
Q 013704 223 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST--LYAPLIRDGR 300 (438)
Q Consensus 223 p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~--Ld~aLlR~GR 300 (438)
..+|+||.+|.+...... ...+.....|.+++. ....+++.+|+|++.... +...+..
T Consensus 82 ~~llilDglDE~~~~~~~-----~~~~~~~~~l~~l~~------------~~~~~~~~liit~r~~~~~~~~~~~~~--- 141 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-----QERQRLLDLLSQLLP------------QALPPGVKLIITSRPRAFPDLRRRLKQ--- 141 (166)
T ss_pred ceEEEEechHhcccchhh-----hHHHHHHHHHHHHhh------------hccCCCCeEEEEEcCChHHHHHHhcCC---
Confidence 889999999998764221 112233344444443 012456777777754332 2222222
Q ss_pred ceEEEec-C-CHHHHHHHHHhhhCC
Q 013704 301 MEKFYWA-P-TREDRIGVCSGIFRT 323 (438)
Q Consensus 301 fd~~i~l-P-~~e~R~~Il~~~l~~ 323 (438)
. ..+.+ | +.+++.++++.++..
T Consensus 142 ~-~~~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 142 A-QILELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred C-cEEEECCCCHHHHHHHHHHHhhc
Confidence 1 33444 3 788888888877753
No 222
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.17 E-value=4.7e-05 Score=82.64 Aligned_cols=171 Identities=19% Similarity=0.243 Sum_probs=103.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC----------CceEEEecccccc----------CCCCChHH------HHHHHHHH
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMG----------INPIMMSAGELES----------GNAGEPAK------LIRQRYRE 213 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg----------~~~i~vs~~~l~s----------~~~Ge~~~------~ir~~f~~ 213 (438)
..+.+.|-||||||.+++.+-+++. ..++.+++-.|.+ .+.|+... .+...|..
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 3678999999999999999998643 4567777765553 12222111 12222220
Q ss_pred HHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCc
Q 013704 214 AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 293 (438)
Q Consensus 214 A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~ 293 (438)
.. ....++||+|||+|.++.+. | ..|.+++| |-.....++.||+.+|..+....
T Consensus 503 ~k---~~~~~~VvLiDElD~Lvtr~----Q---------dVlYn~fd----------Wpt~~~sKLvvi~IaNTmdlPEr 556 (767)
T KOG1514|consen 503 PK---PKRSTTVVLIDELDILVTRS----Q---------DVLYNIFD----------WPTLKNSKLVVIAIANTMDLPER 556 (767)
T ss_pred CC---CCCCCEEEEeccHHHHhccc----H---------HHHHHHhc----------CCcCCCCceEEEEecccccCHHH
Confidence 00 15678999999999999873 2 55788888 88788899999998887664222
Q ss_pred cccC--CCcce--EEEec-CCHHHHHHHHHhhhCCC-CCCH---HHHHHHHccCCcchhHHHHHHHHhhhhHH
Q 013704 294 PLIR--DGRME--KFYWA-PTREDRIGVCSGIFRTD-NVPK---EDIVKLVDTFPGQSIDFFGALRARVYDDE 357 (438)
Q Consensus 294 aLlR--~GRfd--~~i~l-P~~e~R~~Il~~~l~~~-~v~~---~~la~l~~~~sgadi~~~~al~~~~~~~a 357 (438)
-|.. ..|++ +.-+- .+.++..+|+..-+... .+.. +-+++.+...+|..-.-+ .+|.++..-+
T Consensus 557 ~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRral-dic~RA~Eia 628 (767)
T KOG1514|consen 557 LLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRAL-DICRRAAEIA 628 (767)
T ss_pred HhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHH-HHHHHHHHHh
Confidence 2221 01332 22333 58888899988776653 2222 234445555566444333 4455544333
No 223
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.12 E-value=1.8e-05 Score=76.54 Aligned_cols=140 Identities=16% Similarity=0.119 Sum_probs=84.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCC
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 238 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r 238 (438)
..+-.++||+|||||.+++.+|+.+|.+++..++++..+ ...+.++|.-+. ...+-+.|||++.+-..
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~-----~~GaW~cfdefnrl~~~- 99 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLA-----QSGAWLCFDEFNRLSEE- 99 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHH-----HHT-EEEEETCCCSSHH-
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHh-----hcCchhhhhhhhhhhHH-
Confidence 466789999999999999999999999999999987552 566777887663 35789999999987432
Q ss_pred CCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecC----CCCCCCccccCCCcceEEEe-cCCHHHH
Q 013704 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYW-APTREDR 313 (438)
Q Consensus 239 ~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN----~~~~Ld~aLlR~GRfd~~i~-lP~~e~R 313 (438)
--.+-.+.+......+......+.+.|.-. .-.+.+-+.+|.| ....||+.|+. -|.-+-. .||.+..
T Consensus 100 ----vLS~i~~~i~~i~~al~~~~~~~~~~g~~i-~l~~~~~iFiT~np~y~gr~~LP~nLk~--lFRpvam~~PD~~~I 172 (231)
T PF12774_consen 100 ----VLSVISQQIQSIQDALRAKQKSFTLEGQEI-KLNPNCGIFITMNPGYAGRSELPENLKA--LFRPVAMMVPDLSLI 172 (231)
T ss_dssp ----HHHHHHHHHHHHHHHHHCTSSEEEETTCEE-E--TT-EEEEEE-B-CCCC--S-HHHCT--TEEEEE--S--HHHH
T ss_pred ----HHHHHHHHHHHHHHhhcccccccccCCCEE-EEccceeEEEeeccccCCcccCCHhHHH--HhheeEEeCCCHHHH
Confidence 111222333333333344444555555422 2224556667777 34578998888 5534333 5998887
Q ss_pred HHHH
Q 013704 314 IGVC 317 (438)
Q Consensus 314 ~~Il 317 (438)
.+++
T Consensus 173 ~ei~ 176 (231)
T PF12774_consen 173 AEIL 176 (231)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 224
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=2.2e-05 Score=88.16 Aligned_cols=112 Identities=18% Similarity=0.165 Sum_probs=75.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccc------c---ccCCCCChHHHHHHHHHHHHHHHHhCCce
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE------L---ESGNAGEPAKLIRQRYREAADIIKKGKMC 224 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~------l---~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ 224 (438)
+++.-+||.||.|+|||-+|+++|..+ .-.++.++.++ + -.+|+|..+-- ++.+.. ++..-+
T Consensus 589 ~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg--~Lteav----rrrP~s 662 (898)
T KOG1051|consen 589 NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGG--QLTEAV----KRRPYS 662 (898)
T ss_pred CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHH--HHHHHH----hcCCce
Confidence 467889999999999999999999995 34678888874 2 23467755432 222222 377779
Q ss_pred eEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC
Q 013704 225 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS 289 (438)
Q Consensus 225 ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~ 289 (438)
||+|||||+.-+ .+...|++++|.-....-.| ....-.+++||+|+|.-.
T Consensus 663 VVLfdeIEkAh~-------------~v~n~llq~lD~GrltDs~G--r~Vd~kN~I~IMTsn~~~ 712 (898)
T KOG1051|consen 663 VVLFEEIEKAHP-------------DVLNILLQLLDRGRLTDSHG--REVDFKNAIFIMTSNVGS 712 (898)
T ss_pred EEEEechhhcCH-------------HHHHHHHHHHhcCccccCCC--cEeeccceEEEEecccch
Confidence 999999997643 35566777777322221112 134457899999998743
No 225
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.11 E-value=6e-06 Score=83.42 Aligned_cols=60 Identities=20% Similarity=0.181 Sum_probs=49.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC--CceEEEeccccccCCCCChHHHHHHHHHHHH
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAA 215 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~lg--~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~ 215 (438)
+...-+++|+.||||||||.||-+||+++| .||+.++++++.+.-+..++. +.+.|++|.
T Consensus 61 gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~-L~qa~RraI 122 (450)
T COG1224 61 GKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEA-LTQALRRAI 122 (450)
T ss_pred CcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHHH-HHHHHHHhh
Confidence 344568999999999999999999999997 799999999999877776654 456777764
No 226
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.10 E-value=1.2e-05 Score=89.45 Aligned_cols=160 Identities=17% Similarity=0.239 Sum_probs=88.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccC-----CCCC--------hHHHHHHHHHHHHHHHHhCC
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGE--------PAKLIRQRYREAADIIKKGK 222 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~-----~~Ge--------~~~~ir~~f~~A~~~~~~~~ 222 (438)
...|||+|++|||||++|++|.... +.+|+.++|..+... +.|. .... ...|. ...
T Consensus 399 ~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~-~g~le-------~a~ 470 (686)
T PRK15429 399 DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQR-IGRFE-------LAD 470 (686)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcccccccccccch-hhHHH-------hcC
Confidence 4569999999999999999998874 568999999865321 1121 0000 11222 445
Q ss_pred ceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC--CCCccccCC--
Q 013704 223 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS--TLYAPLIRD-- 298 (438)
Q Consensus 223 p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~--~Ld~aLlR~-- 298 (438)
...|||||++.+-. .++..|+.++++-....+++. .....++.+|+||+..- .+.....|.
T Consensus 471 ~GtL~Ldei~~L~~-------------~~Q~~L~~~l~~~~~~~~g~~--~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L 535 (686)
T PRK15429 471 KSSLFLDEVGDMPL-------------ELQPKLLRVLQEQEFERLGSN--KIIQTDVRLIAATNRDLKKMVADREFRSDL 535 (686)
T ss_pred CCeEEEechhhCCH-------------HHHHHHHHHHHhCCEEeCCCC--CcccceEEEEEeCCCCHHHHHHcCcccHHH
Confidence 78999999998843 233456665553221122221 12235788999997642 111111111
Q ss_pred -CcceE-EEecCCHHHHHH----HHHhhhCC---------CCCCHHHHHHHHc-cCCcc
Q 013704 299 -GRMEK-FYWAPTREDRIG----VCSGIFRT---------DNVPKEDIVKLVD-TFPGQ 341 (438)
Q Consensus 299 -GRfd~-~i~lP~~e~R~~----Il~~~l~~---------~~v~~~~la~l~~-~~sga 341 (438)
.|+.. .+.+|.-.+|.+ +++.++.. ..++.+.+..+.. .|||-
T Consensus 536 ~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGN 594 (686)
T PRK15429 536 YYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGN 594 (686)
T ss_pred HhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCc
Confidence 03322 355787777643 33333321 2356666665543 45553
No 227
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.08 E-value=2.1e-06 Score=88.87 Aligned_cols=133 Identities=16% Similarity=0.188 Sum_probs=85.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH----hCCceEEEeccccccCCCCChHHHHHHHHHHHH-----------HHHHhCCce
Q 013704 160 LILGIWGGKGQGKSFQCELVFAK----MGINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 224 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~----lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~-----------~~~~~~~p~ 224 (438)
..+|+.|++||||+++|++|... .+.|||.++|+.+...... .++|-... .++++....
T Consensus 102 ~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~------~eLFG~~kGaftGa~~~k~Glfe~A~GG 175 (403)
T COG1221 102 LPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQE------AELFGHEKGAFTGAQGGKAGLFEQANGG 175 (403)
T ss_pred CcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHH------HHHhccccceeecccCCcCchheecCCC
Confidence 57999999999999999999865 3568999999876532111 11222111 112244578
Q ss_pred eEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCC--CCCCc--cccCCCc
Q 013704 225 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF--STLYA--PLIRDGR 300 (438)
Q Consensus 225 ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~--~~Ld~--aLlR~GR 300 (438)
.||+|||..+-+. .+.-|+.++++-+...+.+. .....+|.+|++||.. +.+-. .|.|+ |
T Consensus 176 tLfLDEI~~LP~~-------------~Q~kLl~~le~g~~~rvG~~--~~~~~dVRli~AT~~~l~~~~~~g~dl~~r-l 239 (403)
T COG1221 176 TLFLDEIHRLPPE-------------GQEKLLRVLEEGEYRRVGGS--QPRPVDVRLICATTEDLEEAVLAGADLTRR-L 239 (403)
T ss_pred EEehhhhhhCCHh-------------HHHHHHHHHHcCceEecCCC--CCcCCCceeeeccccCHHHHHHhhcchhhh-h
Confidence 9999999877432 33567777775555555552 3456889999988642 22222 23221 5
Q ss_pred ceEEEecCCHHHHH
Q 013704 301 MEKFYWAPTREDRI 314 (438)
Q Consensus 301 fd~~i~lP~~e~R~ 314 (438)
+...+.+|...+|.
T Consensus 240 ~~~~I~LPpLrER~ 253 (403)
T COG1221 240 NILTITLPPLRERK 253 (403)
T ss_pred cCceecCCChhhch
Confidence 66667788877773
No 228
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.08 E-value=7.2e-06 Score=86.86 Aligned_cols=151 Identities=18% Similarity=0.293 Sum_probs=95.2
Q ss_pred hccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccc-
Q 013704 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE- 196 (438)
Q Consensus 121 r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~- 196 (438)
..|+|+++++. +|.+.. +...+|.+ .+.+..|||.|.+||||..+|++|-+.. +-|||.++|+-+-
T Consensus 240 a~y~f~~Iig~---S~~m~~--~~~~akr~-----A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 240 AKYTFDDIIGE---SPAMLR--VLELAKRI-----AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred cccchhhhccC---CHHHHH--HHHHHHhh-----cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 35788888876 455432 33344543 3556789999999999999999998884 5699999996543
Q ss_pred ----cCCCCChHHHHHHHHHHHHH-----HHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCcccc
Q 013704 197 ----SGNAGEPAKLIRQRYREAAD-----IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL 267 (438)
Q Consensus 197 ----s~~~Ge~~~~ir~~f~~A~~-----~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~l 267 (438)
|...|-. +..|.-|.. +.+.....-||+|||..+-. .+++-|+..+.+-+...+
T Consensus 310 ~LlESELFGye----~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl-------------~LQaKLLRVLQEkei~rv 372 (560)
T COG3829 310 TLLESELFGYE----KGAFTGASKGGKPGLFELANGGTLFLDEIGEMPL-------------PLQAKLLRVLQEKEIERV 372 (560)
T ss_pred HHHHHHHhCcC----CccccccccCCCCcceeeccCCeEEehhhccCCH-------------HHHHHHHHHHhhceEEec
Confidence 2222210 112222220 11123356899999976632 344667777765555556
Q ss_pred CCccccCCCCCceEEEecCCCCCCCccccCCCcceE
Q 013704 268 PGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 303 (438)
Q Consensus 268 dg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~ 303 (438)
.|. +...-+|.||+|||+. ...++..|||..
T Consensus 373 G~t--~~~~vDVRIIAATN~n---L~~~i~~G~FRe 403 (560)
T COG3829 373 GGT--KPIPVDVRIIAATNRN---LEKMIAEGTFRE 403 (560)
T ss_pred CCC--CceeeEEEEEeccCcC---HHHHHhcCcchh
Confidence 655 3445789999999974 223555666654
No 229
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.07 E-value=5.1e-06 Score=84.72 Aligned_cols=56 Identities=21% Similarity=0.301 Sum_probs=43.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC--CceEEEeccccccCCCCChHHHHHHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREA 214 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg--~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A 214 (438)
..+++||.||||||||.||-+||+++| .||+.++++++.|.-+..++ .+.+.|++|
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKTE-~L~qa~Rra 106 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKTE-ALTQAFRRA 106 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HHH-HHHHHHHCS
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCchH-HHHHHHHHh
Confidence 358999999999999999999999997 79999999999987666654 445667655
No 230
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.04 E-value=9.1e-06 Score=91.47 Aligned_cols=156 Identities=15% Similarity=0.202 Sum_probs=103.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCC-------hHHHHHHHHHHH-HHHHHhCCceeEEecccc
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE-------PAKLIRQRYREA-ADIIKKGKMCCLFINDLD 232 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge-------~~~~ir~~f~~A-~~~~~~~~p~ILfIDEiD 232 (438)
.+|++||||.|||+.+.++|+++|..++..+++...+++... ....|...|..- ........-.||++||+|
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD 438 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVD 438 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccc
Confidence 479999999999999999999999999999998777654221 111222222000 000001122399999999
Q ss_pred ccccC-CCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCcc-ccCCCcceEEEecCCH
Q 013704 233 AGAGR-MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP-LIRDGRMEKFYWAPTR 310 (438)
Q Consensus 233 ~l~~~-r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~a-LlR~GRfd~~i~lP~~ 310 (438)
.+... |+ ..+.+..++. ...+|+|+|+|+......- +.+.+ ++..+.-|+.
T Consensus 439 ~~~~~dRg-----------~v~~l~~l~~---------------ks~~Piv~~cndr~~p~sr~~~~~~-~~l~f~kP~~ 491 (871)
T KOG1968|consen 439 GMFGEDRG-----------GVSKLSSLCK---------------KSSRPLVCTCNDRNLPKSRALSRAC-SDLRFSKPSS 491 (871)
T ss_pred cccchhhh-----------hHHHHHHHHH---------------hccCCeEEEecCCCCccccchhhhc-ceeeecCCcH
Confidence 88762 22 2233444333 4778999999998876663 44432 7777777999
Q ss_pred HHHHHHHHhhhCCC--CCCHHHHHHHHccCCcchhH
Q 013704 311 EDRIGVCSGIFRTD--NVPKEDIVKLVDTFPGQSID 344 (438)
Q Consensus 311 e~R~~Il~~~l~~~--~v~~~~la~l~~~~sgadi~ 344 (438)
+.+..-+..++... .|+.+.+.+++... |.||.
T Consensus 492 ~~i~~ri~si~~se~~ki~~~~l~~~s~~~-~~DiR 526 (871)
T KOG1968|consen 492 ELIRSRIMSICKSEGIKISDDVLEEISKLS-GGDIR 526 (871)
T ss_pred HHHHhhhhhhhcccceecCcHHHHHHHHhc-ccCHH
Confidence 99888887777654 45666777777665 77775
No 231
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.04 E-value=3.9e-05 Score=72.18 Aligned_cols=82 Identities=15% Similarity=0.230 Sum_probs=52.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCceEEEeccccccC--------CCCC-----------hHHHHHHHHH
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG--------NAGE-----------PAKLIRQRYR 212 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs~~~l~s~--------~~Ge-----------~~~~ir~~f~ 212 (438)
|+.....++++||||+|||.+|..++.. .+...++++..++... +.+. ........+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 5666788999999999999999998875 3567888887641100 0000 0000111233
Q ss_pred HHHHHHHhCCceeEEecccccccc
Q 013704 213 EAADIIKKGKMCCLFINDLDAGAG 236 (438)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiD~l~~ 236 (438)
...+.+....+++|+||-+.++..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhH
Confidence 333334466899999999998864
No 232
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.04 E-value=3.5e-05 Score=79.58 Aligned_cols=148 Identities=16% Similarity=0.153 Sum_probs=93.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEEEecc--------------------------------ccccCCCCChHHH-
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG--------------------------------ELESGNAGEPAKL- 206 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~--------------------------------~l~s~~~Ge~~~~- 206 (438)
.|+||-|++|||||+++++|+.-+.---+...|. .+..--.|.++..
T Consensus 39 ggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrv 118 (423)
T COG1239 39 GGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRL 118 (423)
T ss_pred ceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhhh
Confidence 6899999999999999999999864221111110 0111112222221
Q ss_pred -----HHHHHHHHH-----HHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCC-CccccCCccccCC
Q 013704 207 -----IRQRYREAA-----DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNP-TNVQLPGMYNQEE 275 (438)
Q Consensus 207 -----ir~~f~~A~-----~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~-~~v~ldg~~~~~~ 275 (438)
+.+..+.-. .++-+....||+|||+..+.. .+...|++.+.+- +.|+.+|.. -..
T Consensus 119 vGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d-------------~lvd~LLd~aaeG~n~vereGis-i~h 184 (423)
T COG1239 119 VGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDD-------------HLVDALLDVAAEGVNDVEREGIS-IRH 184 (423)
T ss_pred ccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccH-------------HHHHHHHHHHHhCCceeeeCcee-ecc
Confidence 111111100 011144556999999987732 3445677766644 577888862 244
Q ss_pred CCCceEEEecCCCC-CCCccccCCCcceEEEe---cCCHHHHHHHHHhhhCC
Q 013704 276 NPRVPIIVTGNDFS-TLYAPLIRDGRMEKFYW---APTREDRIGVCSGIFRT 323 (438)
Q Consensus 276 ~~~v~VI~TTN~~~-~Ld~aLlR~GRfd~~i~---lP~~e~R~~Il~~~l~~ 323 (438)
..++.+|+|+|.-. .|-+.|+. ||...+. ..+.++|.+|+++-..-
T Consensus 185 pa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 185 PARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred CccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 57888999999754 68888999 9998888 36899999999865543
No 233
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.02 E-value=6.6e-06 Score=82.05 Aligned_cols=131 Identities=15% Similarity=0.199 Sum_probs=78.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCc------eEEEeccccccCCCC-ChHHHHHHHHHHHHH--HHH-hCCceeEEecc
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGIN------PIMMSAGELESGNAG-EPAKLIRQRYREAAD--IIK-KGKMCCLFIND 230 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~------~i~vs~~~l~s~~~G-e~~~~ir~~f~~A~~--~~~-~~~p~ILfIDE 230 (438)
++|+|||||||||....+.|..+-.+ +..+++++ -.| ...+.-...|..+.. +.. ...+.++++||
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd----~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDE 139 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASD----DRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDE 139 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccC----ccCCcchHHHHHHHHhhccceeccccCceeEEEecc
Confidence 89999999999999999999996542 11122221 111 111111233443320 010 13678999999
Q ss_pred ccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEecC-C
Q 013704 231 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-T 309 (438)
Q Consensus 231 iD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~lP-~ 309 (438)
.|++... .| ..|...+. ....+..++.-+|.+..+.|+++. ||.++-+-| +
T Consensus 140 ADaMT~~----AQ---------nALRRvie-------------k~t~n~rF~ii~n~~~ki~pa~qs--Rctrfrf~pl~ 191 (360)
T KOG0990|consen 140 ADAMTRD----AQ---------NALRRVIE-------------KYTANTRFATISNPPQKIHPAQQS--RCTRFRFAPLT 191 (360)
T ss_pred hhHhhHH----HH---------HHHHHHHH-------------HhccceEEEEeccChhhcCchhhc--ccccCCCCCCC
Confidence 9998543 22 23333222 345677788899999999999998 888776643 3
Q ss_pred HHHHHHHHHhhhCC
Q 013704 310 REDRIGVCSGIFRT 323 (438)
Q Consensus 310 ~e~R~~Il~~~l~~ 323 (438)
...-...+..+...
T Consensus 192 ~~~~~~r~shi~e~ 205 (360)
T KOG0990|consen 192 MAQQTERQSHIRES 205 (360)
T ss_pred hhhhhhHHHHHHhc
Confidence 33333444444443
No 234
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.01 E-value=9.8e-06 Score=86.62 Aligned_cols=132 Identities=14% Similarity=0.114 Sum_probs=72.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCC----ceEEEec-----cc------c-----ccCCCCChHH-HHHH--HHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGI----NPIMMSA-----GE------L-----ESGNAGEPAK-LIRQ--RYREA 214 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~----~~i~vs~-----~~------l-----~s~~~Ge~~~-~ir~--~f~~A 214 (438)
....++|.||||||||++++.++..+.- ..+.+.. +. + .+....-+.. .+-. .++.
T Consensus 209 ~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~p- 287 (506)
T PRK09862 209 GGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGP- 287 (506)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehh-
Confidence 3468999999999999999999976421 1111111 00 0 0000000000 0000 0000
Q ss_pred HHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCcc-ccCCCCCceEEEecCCCC----
Q 013704 215 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY-NQEENPRVPIIVTGNDFS---- 289 (438)
Q Consensus 215 ~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~-~~~~~~~v~VI~TTN~~~---- 289 (438)
..+......+|||||++.+- ..+...|++.+++-. +.+...- ......++.+|+|+|...
T Consensus 288 -G~l~~A~gGvLfLDEi~e~~-------------~~~~~~L~~~LE~g~-v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~ 352 (506)
T PRK09862 288 -GEISLAHNGVLFLDELPEFE-------------RRTLDALREPIESGQ-IHLSRTRAKITYPARFQLVAAMNPSPTGHY 352 (506)
T ss_pred -hHhhhccCCEEecCCchhCC-------------HHHHHHHHHHHHcCc-EEEecCCcceeccCCEEEEEeecCccceec
Confidence 11224456799999997642 245566777665222 2112110 012346788999998752
Q ss_pred -----------------CCCccccCCCcceEEEec
Q 013704 290 -----------------TLYAPLIRDGRMEKFYWA 307 (438)
Q Consensus 290 -----------------~Ld~aLlR~GRfd~~i~l 307 (438)
.|..+++. |||..+.+
T Consensus 353 ~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v 385 (506)
T PRK09862 353 QGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEI 385 (506)
T ss_pred CCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEe
Confidence 47789999 99999996
No 235
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.01 E-value=0.0003 Score=68.95 Aligned_cols=152 Identities=18% Similarity=0.128 Sum_probs=78.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH--hCCce---EEEecccccc--------------C---C-CCChHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAK--MGINP---IMMSAGELES--------------G---N-AGEPAKLIRQRYRE 213 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~--lg~~~---i~vs~~~l~s--------------~---~-~Ge~~~~ir~~f~~ 213 (438)
.....+.|+|++|+|||+||..+++. ..-.| +.++.+.-.+ . . .......+...+.+
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 56788999999999999999999988 33322 3333322110 0 0 01111112222222
Q ss_pred HHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCc
Q 013704 214 AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 293 (438)
Q Consensus 214 A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~ 293 (438)
.. ..++++|+||+++... .+ ..+...+. ....+..||+||.......
T Consensus 97 ~L----~~~~~LlVlDdv~~~~--------------~~-~~l~~~~~-------------~~~~~~kilvTTR~~~v~~- 143 (287)
T PF00931_consen 97 LL----KDKRCLLVLDDVWDEE--------------DL-EELREPLP-------------SFSSGSKILVTTRDRSVAG- 143 (287)
T ss_dssp HH----CCTSEEEEEEEE-SHH--------------HH--------H-------------CHHSS-EEEEEESCGGGGT-
T ss_pred hh----ccccceeeeeeecccc--------------cc-cccccccc-------------ccccccccccccccccccc-
Confidence 22 5669999999986442 01 01111000 1134677899998753221
Q ss_pred cccCCCcceEEEec--CCHHHHHHHHHhhhCCCC-----CCHHHHHHHHccCCcchhH
Q 013704 294 PLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDN-----VPKEDIVKLVDTFPGQSID 344 (438)
Q Consensus 294 aLlR~GRfd~~i~l--P~~e~R~~Il~~~l~~~~-----v~~~~la~l~~~~sgadi~ 344 (438)
.+- .-...+.+ .+.++-.++++....... ...+...++++.+.|-++.
T Consensus 144 ~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 198 (287)
T PF00931_consen 144 SLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLA 198 (287)
T ss_dssp THH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHH
T ss_pred ccc---cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 111 11455664 578888888886654322 1123345666777777665
No 236
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.00 E-value=1.2e-05 Score=70.99 Aligned_cols=60 Identities=20% Similarity=0.242 Sum_probs=42.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCC---ceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccc
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGI---NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 235 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~---~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~ 235 (438)
...|||+|+|||||+++|++|....+. +|+.+++..+. .+.++ ...+..|||+|+|.+.
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~-------~a~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLE-------QAKGGTLYLKNIDRLS 82 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHH-------HCTTSEEEEECGCCS-
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHH-------HcCCCEEEECChHHCC
Confidence 355999999999999999999998653 45555555332 23344 4568999999999885
Q ss_pred c
Q 013704 236 G 236 (438)
Q Consensus 236 ~ 236 (438)
.
T Consensus 83 ~ 83 (138)
T PF14532_consen 83 P 83 (138)
T ss_dssp H
T ss_pred H
Confidence 4
No 237
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.95 E-value=0.00016 Score=78.92 Aligned_cols=200 Identities=14% Similarity=0.071 Sum_probs=111.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC--ceEEEeccccccCCCCChHHHHHHHHHHHH-----HHHHhCCceeEEecccc
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESGNAGEPAKLIRQRYREAA-----DIIKKGKMCCLFINDLD 232 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~--~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~-----~~~~~~~p~ILfIDEiD 232 (438)
.|++|-|++||+||+++++++.-+.. +|+.+..+.-....+|.. -|....+.-. .++......|||+||+.
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~--Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n 103 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGL--DLAATLRAGRPVAQRGLLAEADGGVLVLAMAE 103 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCc--hHHhHhhcCCcCCCCCceeeccCCEEEecCcc
Confidence 58999999999999999999998754 777765554444444532 1111111110 01113345799999997
Q ss_pred ccccCCCCCccccchhHHHHHHHHHhhcCCCcccc--CCccccCCCCCceEEEecCCC---CCCCccccCCCcceEEEec
Q 013704 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL--PGMYNQEENPRVPIIVTGNDF---STLYAPLIRDGRMEKFYWA 307 (438)
Q Consensus 233 ~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~l--dg~~~~~~~~~v~VI~TTN~~---~~Ld~aLlR~GRfd~~i~l 307 (438)
.+-+ .+...|++-+++ ..|.+ +|.. .....+..+|+|-|.. ..|+++++. ||+..+.+
T Consensus 104 ~~~~-------------~~~~aLleame~-G~vtIeR~G~s-~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v 166 (584)
T PRK13406 104 RLEP-------------GTAARLAAALDT-GEVRLERDGLA-LRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDL 166 (584)
T ss_pred cCCH-------------HHHHHHHHHHhC-CcEEEEECCcE-EecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEc
Confidence 6632 345667776652 33333 4441 1233566677764432 458999999 99999995
Q ss_pred --CCHHH-H------HHHH--HhhhCCCCCCHHHHHHHHc---cC----CcchhHHHHHHHHhhhhHHHHHHHhHHhHHH
Q 013704 308 --PTRED-R------IGVC--SGIFRTDNVPKEDIVKLVD---TF----PGQSIDFFGALRARVYDDEVRKWISEVGIER 369 (438)
Q Consensus 308 --P~~e~-R------~~Il--~~~l~~~~v~~~~la~l~~---~~----sgadi~~~~al~~~~~~~air~~i~~~~~e~ 369 (438)
|...+ + ..|. +..+..-.++.+.+..+++ .+ .-+++.++.+.|+.+..+. ++++...++..
T Consensus 167 ~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~G-r~~V~~~dv~~ 245 (584)
T PRK13406 167 DGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAG-RTAVEEEDLAL 245 (584)
T ss_pred CCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcC-CCCCCHHHHHH
Confidence 33322 1 1222 2333444455554444333 22 1234443334444333332 45556667777
Q ss_pred HHHHHhcCCC
Q 013704 370 IGKRLVNSKE 379 (438)
Q Consensus 370 i~~~~~~~~~ 379 (438)
...-++.++.
T Consensus 246 Aa~lvL~hR~ 255 (584)
T PRK13406 246 AARLVLAPRA 255 (584)
T ss_pred HHHHHHHhhc
Confidence 7766666554
No 238
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=97.94 E-value=7.5e-05 Score=78.32 Aligned_cols=158 Identities=16% Similarity=0.238 Sum_probs=89.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCCCCChHHHHH-HHHHHH-----------HHHHHhCCc
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIR-QRYREA-----------ADIIKKGKM 223 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~~Ge~~~~ir-~~f~~A-----------~~~~~~~~p 223 (438)
...++|+|++||||+++|+++.... +.+|+.++|..+.. ..+. .+|... ...+.....
T Consensus 162 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~-------~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 234 (445)
T TIGR02915 162 DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE-------NLLESELFGYEKGAFTGAVKQTLGKIEYAHG 234 (445)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh-------HHHHHHhcCCCCCCcCCCccCCCCceeECCC
Confidence 3568999999999999999998875 46899999987631 2221 222210 001123557
Q ss_pred eeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC-------CCCcccc
Q 013704 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-------TLYAPLI 296 (438)
Q Consensus 224 ~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~-------~Ld~aLl 296 (438)
..|||||++.+... ++..|++++++-....+++. .....++.+|+||+..- .+.+.|.
T Consensus 235 gtl~l~~i~~l~~~-------------~q~~l~~~l~~~~~~~~~~~--~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~ 299 (445)
T TIGR02915 235 GTLFLDEIGDLPLN-------------LQAKLLRFLQERVIERLGGR--EEIPVDVRIVCATNQDLKRMIAEGTFREDLF 299 (445)
T ss_pred CEEEEechhhCCHH-------------HHHHHHHHHhhCeEEeCCCC--ceeeeceEEEEecCCCHHHHHHcCCccHHHH
Confidence 89999999988532 33556665552111111211 12234678999887642 2333333
Q ss_pred CCCcce-EEEecCCHHHHHH----HHHhhhC-------C--CCCCHHHHHHHHc-cCCc
Q 013704 297 RDGRME-KFYWAPTREDRIG----VCSGIFR-------T--DNVPKEDIVKLVD-TFPG 340 (438)
Q Consensus 297 R~GRfd-~~i~lP~~e~R~~----Il~~~l~-------~--~~v~~~~la~l~~-~~sg 340 (438)
. |+. ..+.+|...+|.+ +++.++. . ..++.+.+..+.. .|+|
T Consensus 300 ~--~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpg 356 (445)
T TIGR02915 300 Y--RIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPG 356 (445)
T ss_pred H--HhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCC
Confidence 2 333 2344787777753 3333322 1 2456666666654 3455
No 239
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.94 E-value=8.5e-05 Score=68.12 Aligned_cols=31 Identities=19% Similarity=0.209 Sum_probs=25.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHH---hCCceEEEec
Q 013704 162 LGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 192 (438)
Q Consensus 162 lLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs~ 192 (438)
+|++||||||||+++..++.+ .|.++++++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 789999999999999988775 3667777765
No 240
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.94 E-value=4.3e-05 Score=76.24 Aligned_cols=123 Identities=11% Similarity=0.013 Sum_probs=79.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceE--------EEeccccccCC-CC----ChHHHHHHHHHHHHHHHHhCC
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPI--------MMSAGELESGN-AG----EPAKLIRQRYREAADIIKKGK 222 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i--------~vs~~~l~s~~-~G----e~~~~ir~~f~~A~~~~~~~~ 222 (438)
.+.|...||+||+|+||+.+|.++|+.+-+.-- .-..+++.--. .| -.-..+|++-+.....-..+.
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~ 95 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESP 95 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCC
Confidence 467889999999999999999999998643200 00011110000 11 123455555554421111345
Q ss_pred ceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcce
Q 013704 223 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME 302 (438)
Q Consensus 223 p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd 302 (438)
.-|++||++|.+... ..+.|+..++ +..+++.+|..|+.++.|.|.+++ |+.
T Consensus 96 ~kv~ii~~ad~mt~~-------------AaNaLLK~LE-------------EPp~~~~fiL~~~~~~~ll~TI~S--Rcq 147 (290)
T PRK05917 96 YKIYIIHEADRMTLD-------------AISAFLKVLE-------------DPPQHGVIILTSAKPQRLPPTIRS--RSL 147 (290)
T ss_pred ceEEEEechhhcCHH-------------HHHHHHHHhh-------------cCCCCeEEEEEeCChhhCcHHHHh--cce
Confidence 569999999988432 2356777665 667888999999999999999998 875
Q ss_pred EEEe
Q 013704 303 KFYW 306 (438)
Q Consensus 303 ~~i~ 306 (438)
.+..
T Consensus 148 ~~~~ 151 (290)
T PRK05917 148 SIHI 151 (290)
T ss_pred EEEc
Confidence 5444
No 241
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.94 E-value=7.3e-06 Score=83.35 Aligned_cols=137 Identities=18% Similarity=0.210 Sum_probs=73.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccc-----c---------ccCCCCChHHHHHHHHHHHHHHHHhCCc
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE-----L---------ESGNAGEPAKLIRQRYREAADIIKKGKM 223 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~-----l---------~s~~~Ge~~~~ir~~f~~A~~~~~~~~p 223 (438)
...++||.|.||||||.|.+.+++-....+ ++++.. | ..+|.-+.+.. + ....
T Consensus 56 ~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~~~d~~~~~~~leaGal-----------v-lad~ 122 (331)
T PF00493_consen 56 GNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASVSRDPVTGEWVLEAGAL-----------V-LADG 122 (331)
T ss_dssp -S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEECCCGGTSSECEEE-HH-----------H-HCTT
T ss_pred cccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccceeccccccceeEEeCCch-----------h-cccC
Confidence 446999999999999999998876544333 333321 1 11122122111 1 3457
Q ss_pred eeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCC-ccccCCccccCCCCCceEEEecCCCC-------------
Q 013704 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-NVQLPGMYNQEENPRVPIIVTGNDFS------------- 289 (438)
Q Consensus 224 ~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~-~v~ldg~~~~~~~~~v~VI~TTN~~~------------- 289 (438)
.|++|||+|++-.. ....|.+.++.-+ .+.-.|. ...-..+..|++++|...
T Consensus 123 GiccIDe~dk~~~~-------------~~~~l~eaMEqq~isi~kagi-~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni 188 (331)
T PF00493_consen 123 GICCIDEFDKMKED-------------DRDALHEAMEQQTISIAKAGI-VTTLNARCSVLAAANPKFGRYDPNKSLSENI 188 (331)
T ss_dssp SEEEECTTTT--CH-------------HHHHHHHHHHCSCEEECTSSS-EEEEE---EEEEEE--TT--S-TTS-CGCCT
T ss_pred ceeeecccccccch-------------HHHHHHHHHHcCeeccchhhh-cccccchhhhHHHHhhhhhhcchhhhhHHhc
Confidence 89999999988432 1244555554211 1111221 112246788999998765
Q ss_pred CCCccccCCCcceEEEec---CCHHHHHHHHHhhhCC
Q 013704 290 TLYAPLIRDGRMEKFYWA---PTREDRIGVCSGIFRT 323 (438)
Q Consensus 290 ~Ld~aLlR~GRfd~~i~l---P~~e~R~~Il~~~l~~ 323 (438)
.++++|+. |||.++.+ |+.+.-..|.+.++..
T Consensus 189 ~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 189 NLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp -S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred ccchhhHh--hcCEEEEeccccccccccccceEEEec
Confidence 58999999 99999884 7776666666666554
No 242
>PRK15115 response regulator GlrR; Provisional
Probab=97.93 E-value=3.4e-05 Score=80.88 Aligned_cols=157 Identities=16% Similarity=0.281 Sum_probs=91.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCCCCChHHHHH-HHHHHHH-----------HHHHhCCc
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIR-QRYREAA-----------DIIKKGKM 223 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~~Ge~~~~ir-~~f~~A~-----------~~~~~~~p 223 (438)
...++|+|++|||||++|+++.... +.+|+.++|..+.. ..+. .+|..+. ...+....
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~-------~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 229 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPE-------QLLESELFGHARGAFTGAVSNREGLFQAAEG 229 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCH-------HHHHHHhcCCCcCCCCCCccCCCCcEEECCC
Confidence 3468999999999999999998884 47899999987642 2211 2232110 01124456
Q ss_pred eeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcc--
Q 013704 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM-- 301 (438)
Q Consensus 224 ~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRf-- 301 (438)
..|||||+|.+... .+..|+..+++.....+.+. .....++.+|+||+.. ++ .+...|+|
T Consensus 230 gtl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~g~~--~~~~~~~rii~~~~~~--l~-~~~~~~~f~~ 291 (444)
T PRK15115 230 GTLFLDEIGDMPAP-------------LQVKLLRVLQERKVRPLGSN--RDIDIDVRIISATHRD--LP-KAMARGEFRE 291 (444)
T ss_pred CEEEEEccccCCHH-------------HHHHHHHHHhhCCEEeCCCC--ceeeeeEEEEEeCCCC--HH-HHHHcCCccH
Confidence 79999999988543 33456665553222222221 1223478899999853 33 23344566
Q ss_pred -------eEEEecCCHHHHHH----HHHhhhCC---------CCCCHHHHHHHHcc-CCc
Q 013704 302 -------EKFYWAPTREDRIG----VCSGIFRT---------DNVPKEDIVKLVDT-FPG 340 (438)
Q Consensus 302 -------d~~i~lP~~e~R~~----Il~~~l~~---------~~v~~~~la~l~~~-~sg 340 (438)
...+.+|.-.+|.+ +++.++.. ..++.+.+..+... |+|
T Consensus 292 ~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~Wpg 351 (444)
T PRK15115 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 (444)
T ss_pred HHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCC
Confidence 33445688777732 33333321 23566666666543 355
No 243
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.93 E-value=9.7e-05 Score=67.36 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
+-+.-+++.||||+|||+++..|+..+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHH
Confidence 446779999999999999999999884
No 244
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.91 E-value=7.6e-05 Score=78.88 Aligned_cols=160 Identities=14% Similarity=0.205 Sum_probs=92.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCCCCChHHHHHHHHHHHH-----------HHHHhCCce
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 224 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~-----------~~~~~~~p~ 224 (438)
...++++|++|||||++|++|.... +.+|+.++|+.+.. ...-..+|.... ..+......
T Consensus 161 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~------~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~G 234 (469)
T PRK10923 161 SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPK------DLIESELFGHEKGAFTGANTIRQGRFEQADGG 234 (469)
T ss_pred CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCH------HHHHHHhcCCCCCCCCCCCcCCCCCeeECCCC
Confidence 4569999999999999999999985 46899999987632 111112222110 001134466
Q ss_pred eEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCC-------CCCCccccC
Q 013704 225 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-------STLYAPLIR 297 (438)
Q Consensus 225 ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~-------~~Ld~aLlR 297 (438)
.|||||+|.+... ++..|+.++++.....+++. .....++.||+||+.. ..+.+.|..
T Consensus 235 tl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~--~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~ 299 (469)
T PRK10923 235 TLFLDEIGDMPLD-------------VQTRLLRVLADGQFYRVGGY--APVKVDVRIIAATHQNLEQRVQEGKFREDLFH 299 (469)
T ss_pred EEEEeccccCCHH-------------HHHHHHHHHhcCcEEeCCCC--CeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH
Confidence 8999999988542 33456666653322222222 1123467899988753 234445555
Q ss_pred CCcc-eEEEecCCHHHHH----HHHHhhhCC---------CCCCHHHHHHHHc-cCCcc
Q 013704 298 DGRM-EKFYWAPTREDRI----GVCSGIFRT---------DNVPKEDIVKLVD-TFPGQ 341 (438)
Q Consensus 298 ~GRf-d~~i~lP~~e~R~----~Il~~~l~~---------~~v~~~~la~l~~-~~sga 341 (438)
|+ ...+.+|...+|. .+++.++.. ..++.+.+..+.. .|||-
T Consensus 300 --~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN 356 (469)
T PRK10923 300 --RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 (469)
T ss_pred --HhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCh
Confidence 55 3455577655553 344444321 2355666665554 45553
No 245
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.89 E-value=0.0001 Score=69.01 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
...++|+||.|+|||+|++.+.+.+
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 4679999999999999999999987
No 246
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.85 E-value=1.6e-05 Score=67.96 Aligned_cols=31 Identities=29% Similarity=0.370 Sum_probs=27.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEEEec
Q 013704 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192 (438)
Q Consensus 162 lLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~ 192 (438)
|+|.||||+|||++|+.+|+.+|++++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988776653
No 247
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.84 E-value=4.4e-05 Score=78.92 Aligned_cols=77 Identities=12% Similarity=0.121 Sum_probs=52.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC-----ceE-EEeccc---------------cccCCCCChHHHHH---HHHHHHH
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGI-----NPI-MMSAGE---------------LESGNAGEPAKLIR---QRYREAA 215 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~-----~~i-~vs~~~---------------l~s~~~Ge~~~~ir---~~f~~A~ 215 (438)
.-.||+||||+|||+|++.|++.... .++ .+.... +.+.+...++..++ ..+..|.
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae 249 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAK 249 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 35788899999999999999998643 222 222221 33444455555555 3455555
Q ss_pred HHHHhCCceeEEecccccccc
Q 013704 216 DIIKKGKMCCLFINDLDAGAG 236 (438)
Q Consensus 216 ~~~~~~~p~ILfIDEiD~l~~ 236 (438)
.....++..+||||||.+++.
T Consensus 250 ~~~e~G~dVlL~iDsItR~ar 270 (416)
T PRK09376 250 RLVEHGKDVVILLDSITRLAR 270 (416)
T ss_pred HHHHcCCCEEEEEEChHHHHH
Confidence 555578899999999998864
No 248
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.83 E-value=8.2e-05 Score=75.34 Aligned_cols=107 Identities=17% Similarity=0.265 Sum_probs=61.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCce-EEEeccccc-------cCCCCChHHHHHHHHHHHHHHHHhCCceeEE
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINP-IMMSAGELE-------SGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~-i~vs~~~l~-------s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILf 227 (438)
..+|+|+.||||-|+|||+|.-.....+..+- ..+..-.+. ..+.|++. -+ ..-|.++ ...-.||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~d-pl---~~iA~~~--~~~~~vLC 135 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTD-PL---PPIADEL--AAETRVLC 135 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCC-cc---HHHHHHH--HhcCCEEE
Confidence 35679999999999999999999998865432 111110000 00112210 00 0011111 23345999
Q ss_pred eccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCC-CCCCCc
Q 013704 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND-FSTLYA 293 (438)
Q Consensus 228 IDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~-~~~Ld~ 293 (438)
|||+.- .+..+.++.+.|++.+- ..+|.+++|+|. |+.|++
T Consensus 136 fDEF~V----------tDI~DAMiL~rL~~~Lf---------------~~GV~lvaTSN~~P~~LY~ 177 (367)
T COG1485 136 FDEFEV----------TDIADAMILGRLLEALF---------------ARGVVLVATSNTAPDNLYK 177 (367)
T ss_pred eeeeee----------cChHHHHHHHHHHHHHH---------------HCCcEEEEeCCCChHHhcc
Confidence 999852 23345677777766433 368889999986 344443
No 249
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.80 E-value=0.00018 Score=76.42 Aligned_cols=56 Identities=29% Similarity=0.404 Sum_probs=40.7
Q ss_pred hhhHHHHHHHH-----HHhhhc-----CCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEec
Q 013704 136 PAFMDKVVVHI-----TKNFLN-----LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192 (438)
Q Consensus 136 ~~~~d~~~~~i-----~k~~l~-----~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~ 192 (438)
|+-.+++.+|- ++.+|. .++ -..+.+||+||+|||||+..+.+|+++|+.++.-+.
T Consensus 78 P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~-l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~N 143 (634)
T KOG1970|consen 78 PRTLEELAVHKKKISEVKQWLKQVAEFTPK-LGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSN 143 (634)
T ss_pred cccHHHHhhhHHhHHHHHHHHHHHHHhccC-CCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecC
Confidence 44455555544 344444 232 334789999999999999999999999999888763
No 250
>PRK08118 topology modulation protein; Reviewed
Probab=97.78 E-value=6.7e-05 Score=68.87 Aligned_cols=32 Identities=25% Similarity=0.251 Sum_probs=29.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEEec
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~ 192 (438)
.|++.||||+|||++|+.|++.++++++.++.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 58999999999999999999999999887764
No 251
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.78 E-value=8.9e-05 Score=78.45 Aligned_cols=79 Identities=20% Similarity=0.140 Sum_probs=52.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCC------CCC--------hHHHHHHHHHHHHHH
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN------AGE--------PAKLIRQRYREAADI 217 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~------~Ge--------~~~~ir~~f~~A~~~ 217 (438)
|+.+...++|+||||+|||+++..+|... +.++++++..+-.... .|. .+..+..++ +.
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~----~~ 151 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAIL----AT 151 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHH----HH
Confidence 56666789999999999999999998875 6678888865322110 000 001122222 23
Q ss_pred HHhCCceeEEeccccccccC
Q 013704 218 IKKGKMCCLFINDLDAGAGR 237 (438)
Q Consensus 218 ~~~~~p~ILfIDEiD~l~~~ 237 (438)
++..+|.+|+||++..+...
T Consensus 152 i~~~~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 152 IEEEKPDLVVIDSIQTMYSP 171 (446)
T ss_pred HHhhCCCEEEEechhhhccc
Confidence 34678999999999988653
No 252
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.78 E-value=9.6e-05 Score=79.96 Aligned_cols=133 Identities=18% Similarity=0.253 Sum_probs=72.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHH-----HHHHHHHHHHHHHhCCceeEEecccccc
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKL-----IRQRYREAADIIKKGKMCCLFINDLDAG 234 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~-----ir~~f~~A~~~~~~~~p~ILfIDEiD~l 234 (438)
-+|||+|.||||||-+.+.+++-+..-.+ .++- .+.-+|-+.-. -+++.-+.-.++ .....|-.|||+|++
T Consensus 463 INILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGk--GsSavGLTayVtrd~dtkqlVLesGALV-LSD~GiCCIDEFDKM 538 (804)
T KOG0478|consen 463 INILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGK--GSSAVGLTAYVTKDPDTRQLVLESGALV-LSDNGICCIDEFDKM 538 (804)
T ss_pred ceEEEecCCCcCHHHHHHHHHHhCCccee-ecCC--ccchhcceeeEEecCccceeeeecCcEE-EcCCceEEchhhhhh
Confidence 68999999999999999999987543322 2221 00001110000 001111111011 344567789999998
Q ss_pred ccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC-------------CCCccccCCCcc
Q 013704 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-------------TLYAPLIRDGRM 301 (438)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~-------------~Ld~aLlR~GRf 301 (438)
... ++ .+-.+.+.+.-+.+ -.-|. ...-+.+.-||+++|... .|+|.|++ ||
T Consensus 539 ~dS----tr-SvLhEvMEQQTvSI-------AKAGI-I~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RF 603 (804)
T KOG0478|consen 539 SDS----TR-SVLHEVMEQQTLSI-------AKAGI-IASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RF 603 (804)
T ss_pred hHH----HH-HHHHHHHHHhhhhH-------hhcce-eeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hh
Confidence 432 11 11111111122221 12232 224457888999998443 48999999 99
Q ss_pred eEEEec---CCHH
Q 013704 302 EKFYWA---PTRE 311 (438)
Q Consensus 302 d~~i~l---P~~e 311 (438)
|.+|.+ |++.
T Consensus 604 DLIylllD~~DE~ 616 (804)
T KOG0478|consen 604 DLIFLLLDKPDER 616 (804)
T ss_pred cEEEEEecCcchh
Confidence 999884 5555
No 253
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.77 E-value=6.6e-05 Score=71.57 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=33.0
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCceEEEecc
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAG 193 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs~~ 193 (438)
.|+.....++++||||+|||++|..+|.+ .+.++++++..
T Consensus 18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 18 GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 35666678999999999999999999975 36778888765
No 254
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.77 E-value=0.00013 Score=76.63 Aligned_cols=132 Identities=16% Similarity=0.220 Sum_probs=76.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCCCCChHHHHHHHHHHHH-----------HHHHhCCce
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 224 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~-----------~~~~~~~p~ 224 (438)
...+|++|++||||+++|+++.... +.+|+.++|..+... ..-..+|.... .........
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~------~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 239 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPES------LLESELFGHEKGAFTGAQTLRQGLFERANEG 239 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHH------HHHHHhcCCCCCCCCCCCCCCCCceEECCCC
Confidence 3569999999999999999998774 468999999876421 11111222100 011134467
Q ss_pred eEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceE-
Q 013704 225 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK- 303 (438)
Q Consensus 225 ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~- 303 (438)
+|||||+|.+... ++..|++++++-....+++. .....++.||+|||..- ..+.+.|+|..
T Consensus 240 tl~ld~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~--~~~~~~~rii~~t~~~l---~~~~~~g~~~~~ 301 (457)
T PRK11361 240 TLLLDEIGEMPLV-------------LQAKLLRILQEREFERIGGH--QTIKVDIRIIAATNRDL---QAMVKEGTFRED 301 (457)
T ss_pred EEEEechhhCCHH-------------HHHHHHHHHhcCcEEeCCCC--ceeeeceEEEEeCCCCH---HHHHHcCCchHH
Confidence 9999999988543 33556666653222222221 12234678999998632 12334444433
Q ss_pred --------EEecCCHHHHH
Q 013704 304 --------FYWAPTREDRI 314 (438)
Q Consensus 304 --------~i~lP~~e~R~ 314 (438)
.+.+|...+|.
T Consensus 302 l~~~l~~~~i~~ppLreR~ 320 (457)
T PRK11361 302 LFYRLNVIHLILPPLRDRR 320 (457)
T ss_pred HHHHhccceecCCChhhch
Confidence 23357666663
No 255
>PHA02774 E1; Provisional
Probab=97.76 E-value=0.00027 Score=76.19 Aligned_cols=126 Identities=18% Similarity=0.186 Sum_probs=70.8
Q ss_pred HHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEE-EeccccccCCCCChHHHHHHHHHHHHHHHHhCCc
Q 013704 145 HITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-MSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223 (438)
Q Consensus 145 ~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~-vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p 223 (438)
...|.++. ++.+...++||||||||||++|-+|++.++-.++. ++.. +.+ -++.+ ..-
T Consensus 422 ~~lk~~l~--~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~---s~F----------wLqpl------~d~ 480 (613)
T PHA02774 422 TALKDFLK--GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSK---SHF----------WLQPL------ADA 480 (613)
T ss_pred HHHHHHHh--cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECc---ccc----------ccchh------ccC
Confidence 33455542 44444689999999999999999999998654433 4432 111 01111 223
Q ss_pred eeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccc-cCCCCCceEEEecCCCCCCCcc---ccCCC
Q 013704 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN-QEENPRVPIIVTGNDFSTLYAP---LIRDG 299 (438)
Q Consensus 224 ~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~-~~~~~~v~VI~TTN~~~~Ld~a---LlR~G 299 (438)
.|++|||+-.-+ -.-+-..|.+++|- ..|.+|--+. ......-|+|+|||---.-++. |.+
T Consensus 481 ki~vlDD~t~~~------------w~y~d~~Lrn~LdG-~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~s-- 545 (613)
T PHA02774 481 KIALLDDATHPC------------WDYIDTYLRNALDG-NPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHS-- 545 (613)
T ss_pred CEEEEecCcchH------------HHHHHHHHHHHcCC-CcceeeecccCcccccCCCEEEecCCCcccchhhHHhhh--
Confidence 589999981110 01223456777762 2444443222 1233567999999954333333 344
Q ss_pred cceEEEe
Q 013704 300 RMEKFYW 306 (438)
Q Consensus 300 Rfd~~i~ 306 (438)
|+-.+.+
T Consensus 546 Ri~~f~F 552 (613)
T PHA02774 546 RITVFEF 552 (613)
T ss_pred hEEEEEC
Confidence 5544444
No 256
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.75 E-value=0.00039 Score=81.70 Aligned_cols=31 Identities=26% Similarity=0.605 Sum_probs=26.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~ 186 (438)
....+.+.||||+|+|||+||+++++.+...
T Consensus 204 ~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~ 234 (1153)
T PLN03210 204 SEEVRMVGIWGSSGIGKTTIARALFSRLSRQ 234 (1153)
T ss_pred cCceEEEEEEcCCCCchHHHHHHHHHHHhhc
Confidence 3456789999999999999999999986543
No 257
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.74 E-value=6.9e-05 Score=79.02 Aligned_cols=120 Identities=15% Similarity=0.196 Sum_probs=73.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCCCCChHHHHHH-HHHHHH-----------HHHHhCCc
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQ-RYREAA-----------DIIKKGKM 223 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~~Ge~~~~ir~-~f~~A~-----------~~~~~~~p 223 (438)
...|||+|++||||-.+|++|-+.. +-||+.++|+.+. +.++.. +|-..+ ..++....
T Consensus 164 ~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip-------~~l~ESELFGhekGAFTGA~~~r~G~fE~A~G 236 (464)
T COG2204 164 DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIP-------ENLLESELFGHEKGAFTGAITRRIGRFEQANG 236 (464)
T ss_pred CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCC-------HHHHHHHhhcccccCcCCcccccCcceeEcCC
Confidence 4569999999999999999999885 4599999997654 222221 232111 01124557
Q ss_pred eeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceE
Q 013704 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 303 (438)
Q Consensus 224 ~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~ 303 (438)
..||||||..+.- .++.-|+..+.+-+.-.+.|. +.-.-+|.||+|||+. |. .....|||-.
T Consensus 237 GTLfLDEI~~mpl-------------~~Q~kLLRvLqe~~~~rvG~~--~~i~vdvRiIaaT~~d--L~-~~v~~G~FRe 298 (464)
T COG2204 237 GTLFLDEIGEMPL-------------ELQVKLLRVLQEREFERVGGN--KPIKVDVRIIAATNRD--LE-EEVAAGRFRE 298 (464)
T ss_pred ceEEeeccccCCH-------------HHHHHHHHHHHcCeeEecCCC--cccceeeEEEeecCcC--HH-HHHHcCCcHH
Confidence 8999999987632 233445555553333333332 2234578899999873 11 2344456544
No 258
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.72 E-value=9.5e-05 Score=77.87 Aligned_cols=158 Identities=15% Similarity=0.223 Sum_probs=88.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCCCCChHHHHH-HHHHH-------HH----HHHHhCCc
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIR-QRYRE-------AA----DIIKKGKM 223 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~~Ge~~~~ir-~~f~~-------A~----~~~~~~~p 223 (438)
+..+++.|.+||||+++|+++.... +.+|+.++|..+.. ..+. .+|.. +. .......+
T Consensus 157 ~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~-------~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 229 (463)
T TIGR01818 157 DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPK-------DLIESELFGHEKGAFTGANTRRQGRFEQADG 229 (463)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCH-------HHHHHHhcCCCCCCCCCcccCCCCcEEECCC
Confidence 4569999999999999999998874 46899999887632 1111 11110 00 01124457
Q ss_pred eeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC-------CCCcccc
Q 013704 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-------TLYAPLI 296 (438)
Q Consensus 224 ~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~-------~Ld~aLl 296 (438)
..|||||+|.+... +...|++++++-....+++. .....++.||+||+..- .+.+.|.
T Consensus 230 gtl~l~ei~~l~~~-------------~q~~ll~~l~~~~~~~~~~~--~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~ 294 (463)
T TIGR01818 230 GTLFLDEIGDMPLD-------------AQTRLLRVLADGEFYRVGGR--TPIKVDVRIVAATHQNLEALVRQGKFREDLF 294 (463)
T ss_pred CeEEEEchhhCCHH-------------HHHHHHHHHhcCcEEECCCC--ceeeeeeEEEEeCCCCHHHHHHcCCcHHHHH
Confidence 88999999988532 23456665552211111211 12234677899887542 2222333
Q ss_pred CCCcce-EEEecCCHHHH----HHHHHhhhCC---------CCCCHHHHHHHHc-cCCc
Q 013704 297 RDGRME-KFYWAPTREDR----IGVCSGIFRT---------DNVPKEDIVKLVD-TFPG 340 (438)
Q Consensus 297 R~GRfd-~~i~lP~~e~R----~~Il~~~l~~---------~~v~~~~la~l~~-~~sg 340 (438)
. |+. ..+.+|...+| ..+++.++.. ..++.+.+..+.. .|+|
T Consensus 295 ~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpg 351 (463)
T TIGR01818 295 H--RLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPG 351 (463)
T ss_pred H--HhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCC
Confidence 3 333 25557765544 3444433321 2456666666554 3454
No 259
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.72 E-value=0.00037 Score=72.85 Aligned_cols=154 Identities=16% Similarity=0.190 Sum_probs=95.1
Q ss_pred HHHHhhhcC-CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC-----CceEEEecccccc--------------CCCCCh-
Q 013704 145 HITKNFLNL-PNVKVPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELES--------------GNAGEP- 203 (438)
Q Consensus 145 ~i~k~~l~~-~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg-----~~~i~vs~~~l~s--------------~~~Ge~- 203 (438)
.+++.|... ...+.+..+.+.|-||||||.+...+-.... ...+++++.+|.. ...+.+
T Consensus 160 ~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~ 239 (529)
T KOG2227|consen 160 DIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSPGT 239 (529)
T ss_pred HHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCCch
Confidence 344555442 2356678899999999999998887766532 2346677654321 112211
Q ss_pred HHHHHHHHHHHHHHHHhC-CceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEE
Q 013704 204 AKLIRQRYREAADIIKKG-KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282 (438)
Q Consensus 204 ~~~ir~~f~~A~~~~~~~-~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI 282 (438)
+......|..- .... .|-+|++||+|.++.+.. ..|..|+. |-.-...++.+|
T Consensus 240 ~~~~~~~~~~h---~~q~k~~~llVlDEmD~L~tr~~-------------~vLy~lFe----------wp~lp~sr~iLi 293 (529)
T KOG2227|consen 240 GMQHLEKFEKH---TKQSKFMLLLVLDEMDHLITRSQ-------------TVLYTLFE----------WPKLPNSRIILI 293 (529)
T ss_pred hHHHHHHHHHH---HhcccceEEEEechhhHHhhccc-------------ceeeeehh----------cccCCcceeeee
Confidence 11222233322 1233 488999999999985532 23444444 666778899999
Q ss_pred EecCCCCCCCccccCC----CcceEEEec--CCHHHHHHHHHhhhCCC
Q 013704 283 VTGNDFSTLYAPLIRD----GRMEKFYWA--PTREDRIGVCSGIFRTD 324 (438)
Q Consensus 283 ~TTN~~~~Ld~aLlR~----GRfd~~i~l--P~~e~R~~Il~~~l~~~ 324 (438)
+.+|..+.-|..|.|- +--.+.+.+ .+.++..+|++.-+...
T Consensus 294 GiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~ 341 (529)
T KOG2227|consen 294 GIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE 341 (529)
T ss_pred eehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc
Confidence 9999998777666441 112223333 58999999999777653
No 260
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.71 E-value=4e-05 Score=69.24 Aligned_cols=33 Identities=24% Similarity=0.185 Sum_probs=29.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEE
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~v 190 (438)
+|..|+|+||||||||++|+.+|+.++.+++..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 467899999999999999999999999887743
No 261
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.70 E-value=0.00053 Score=68.93 Aligned_cols=130 Identities=9% Similarity=0.099 Sum_probs=81.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC-------------ceEEEeccccccCCCCChHHHHHHHHHHHHHHH-HhCC
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI-------------NPIMMSAGELESGNAGEPAKLIRQRYREAADII-KKGK 222 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~-------------~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~-~~~~ 222 (438)
+.+...||+|+.|.||+.+++.+++.+-+ .++.++.. ... -.-..++.+.+...-.. ..+.
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~--i~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKD--LSKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCc--CCHHHHHHHHHHhccCCcccCC
Confidence 45788999999999999999999999622 11222100 000 11234555544432000 0246
Q ss_pred ceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcce
Q 013704 223 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME 302 (438)
Q Consensus 223 p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd 302 (438)
.-|++||++|.+.. ...+.|+..++ +..+.+.+|.+|+.++.|.+.+++ |..
T Consensus 91 ~KvvII~~~e~m~~-------------~a~NaLLK~LE-------------EPp~~t~~il~~~~~~kll~TI~S--Rc~ 142 (299)
T PRK07132 91 KKILIIKNIEKTSN-------------SLLNALLKTIE-------------EPPKDTYFLLTTKNINKVLPTIVS--RCQ 142 (299)
T ss_pred ceEEEEecccccCH-------------HHHHHHHHHhh-------------CCCCCeEEEEEeCChHhChHHHHh--CeE
Confidence 77999999977632 22345666555 566778888888888999999988 765
Q ss_pred EEEe-cCCHHHHHHHHHh
Q 013704 303 KFYW-APTREDRIGVCSG 319 (438)
Q Consensus 303 ~~i~-lP~~e~R~~Il~~ 319 (438)
.+-. .|+.++-.+.+..
T Consensus 143 ~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 143 VFNVKEPDQQKILAKLLS 160 (299)
T ss_pred EEECCCCCHHHHHHHHHH
Confidence 5444 3567766665543
No 262
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.68 E-value=0.00039 Score=68.29 Aligned_cols=125 Identities=7% Similarity=-0.055 Sum_probs=77.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCce--------------EEEeccccccCCC-C--ChHHHHHHHHHHHHHHH-
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINP--------------IMMSAGELESGNA-G--EPAKLIRQRYREAADII- 218 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~--------------i~vs~~~l~s~~~-G--e~~~~ir~~f~~A~~~~- 218 (438)
.+|..+||+||+|+||..+|.++|+.+-..- ..-+.+++.--+. + -....+|++-+......
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 3578899999999999999999999853210 0000111111000 0 11233444443322000
Q ss_pred HhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCC
Q 013704 219 KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 298 (438)
Q Consensus 219 ~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~ 298 (438)
+....-|++|+++|.+-. ...+.|+..++ +..+++.+|.+|+.++.|.+-+++
T Consensus 85 e~~~~KV~II~~ae~m~~-------------~AaNaLLK~LE-------------EPp~~t~fiLit~~~~~lLpTI~S- 137 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNK-------------QSANSLLKLIE-------------EPPKNTYGIFTTRNENNILNTILS- 137 (261)
T ss_pred hcCCCEEEEeccHhhhCH-------------HHHHHHHHhhc-------------CCCCCeEEEEEECChHhCchHhhh-
Confidence 123457999999998843 23356777665 677888999999999999999999
Q ss_pred CcceEEEecCCH
Q 013704 299 GRMEKFYWAPTR 310 (438)
Q Consensus 299 GRfd~~i~lP~~ 310 (438)
|...+. +|..
T Consensus 138 -RCq~~~-~~~~ 147 (261)
T PRK05818 138 -RCVQYV-VLSK 147 (261)
T ss_pred -heeeee-cCCh
Confidence 875533 4433
No 263
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.68 E-value=0.00017 Score=70.57 Aligned_cols=80 Identities=14% Similarity=0.137 Sum_probs=50.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------eEEEecc---c-------c-----ccCCCCChHHHHH---HHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------PIMMSAG---E-------L-----ESGNAGEPAKLIR---QRYR 212 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~------~i~vs~~---~-------l-----~s~~~Ge~~~~ir---~~f~ 212 (438)
.....++|.||+|||||++++.+++.+... ++.+... + + .+.+-..+...++ .+..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 344678999999999999999999987542 2222221 0 1 2222223333333 3444
Q ss_pred HHHHHHHhCCceeEEecccccccc
Q 013704 213 EAADIIKKGKMCCLFINDLDAGAG 236 (438)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiD~l~~ 236 (438)
.|......++..+|||||+.++..
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~a~ 117 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRLAR 117 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHhhh
Confidence 444444467899999999998754
No 264
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.66 E-value=6.8e-05 Score=65.68 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=26.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccc
Q 013704 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196 (438)
Q Consensus 162 lLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~ 196 (438)
+++.||||+|||++|+.+++.++ ...++...+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~ 34 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIR 34 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHH
Confidence 78999999999999999999999 4445554443
No 265
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.66 E-value=0.00028 Score=71.47 Aligned_cols=84 Identities=15% Similarity=0.198 Sum_probs=53.9
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCceEEEeccccccC----CCCC--------hHHHHHHHHHHHHHHH
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG----NAGE--------PAKLIRQRYREAADII 218 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs~~~l~s~----~~Ge--------~~~~ir~~f~~A~~~~ 218 (438)
.|+..-..++|+||||||||+||..++.+ .|-.+++++..+..+. ..|- ......+.+..+..++
T Consensus 50 GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li 129 (321)
T TIGR02012 50 GGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLV 129 (321)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 46666788999999999999998887765 3566777765332110 0000 0001222334444455
Q ss_pred HhCCceeEEeccccccccC
Q 013704 219 KKGKMCCLFINDLDAGAGR 237 (438)
Q Consensus 219 ~~~~p~ILfIDEiD~l~~~ 237 (438)
+...+.+|+||-+-++.++
T Consensus 130 ~~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 130 RSGAVDIIVVDSVAALVPK 148 (321)
T ss_pred hccCCcEEEEcchhhhccc
Confidence 5788999999999998764
No 266
>PRK07261 topology modulation protein; Provisional
Probab=97.66 E-value=0.00013 Score=67.17 Aligned_cols=41 Identities=15% Similarity=0.140 Sum_probs=31.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCC
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG 201 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~G 201 (438)
-|++.|+||+|||++|+.+++.++.+++.++.-.....+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~ 42 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQE 42 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccccc
Confidence 38899999999999999999999998877654333333433
No 267
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.66 E-value=0.00027 Score=67.91 Aligned_cols=81 Identities=17% Similarity=0.193 Sum_probs=54.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCceEEEeccccccC--------------C-----C----------CC
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG--------------N-----A----------GE 202 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs~~~l~s~--------------~-----~----------Ge 202 (438)
|+.....++++||||+|||+++..++.+ .|-.+++++..+-... + . ..
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 100 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEW 100 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEecccccccc
Confidence 6777889999999999999999999765 3666766665321100 0 0 00
Q ss_pred hHHHHHHHHHHHHHHHHhCCceeEEeccccccc
Q 013704 203 PAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 235 (438)
Q Consensus 203 ~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~ 235 (438)
......+++....+.++...|.+++||++-.+.
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 011224455555556667799999999998764
No 268
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.65 E-value=0.00014 Score=80.05 Aligned_cols=143 Identities=18% Similarity=0.227 Sum_probs=80.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHH-----HHHHHHHHhCCceeEEecccccc
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY-----REAADIIKKGKMCCLFINDLDAG 234 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f-----~~A~~~~~~~~p~ILfIDEiD~l 234 (438)
-+|||.|.||||||-|.+.+++-+...++. ++. .+.-+|-+...++.-. -+|-. +-...+.|..|||+|++
T Consensus 320 InILLvGDPgtaKSqlLk~v~~~aPr~vyt-sgk--gss~~GLTAav~rd~~tge~~LeaGA-LVlAD~Gv~cIDEfdKm 395 (682)
T COG1241 320 IHILLVGDPGTAKSQLLKYVAKLAPRGVYT-SGK--GSSAAGLTAAVVRDKVTGEWVLEAGA-LVLADGGVCCIDEFDKM 395 (682)
T ss_pred eeEEEcCCCchhHHHHHHHHHhhCCceEEE-ccc--cccccCceeEEEEccCCCeEEEeCCE-EEEecCCEEEEEeccCC
Confidence 689999999999999999999986554432 211 0111122221111111 01110 11456789999999987
Q ss_pred ccCCCCCccccchhHHHHHHHHHhhcCCCccccCCc-cccCCCCCceEEEecCCCC-------------CCCccccCCCc
Q 013704 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM-YNQEENPRVPIIVTGNDFS-------------TLYAPLIRDGR 300 (438)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~-~~~~~~~~v~VI~TTN~~~-------------~Ld~aLlR~GR 300 (438)
-... . ..+.+.++ -..|++..- ....-..++-|++|+|... .|+++|++ |
T Consensus 396 ~~~d----r---------~aihEaME-QQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS--R 459 (682)
T COG1241 396 NEED----R---------VAIHEAME-QQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS--R 459 (682)
T ss_pred ChHH----H---------HHHHHHHH-hcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--h
Confidence 4321 1 11222111 011122111 1223346778899998664 48999999 9
Q ss_pred ceEEEec---CCHHHHHHHHHhhhC
Q 013704 301 MEKFYWA---PTREDRIGVCSGIFR 322 (438)
Q Consensus 301 fd~~i~l---P~~e~R~~Il~~~l~ 322 (438)
||.++.+ |+.+.-..|-.+++.
T Consensus 460 FDLifvl~D~~d~~~D~~ia~hil~ 484 (682)
T COG1241 460 FDLIFVLKDDPDEEKDEEIAEHILD 484 (682)
T ss_pred CCeeEEecCCCCccchHHHHHHHHH
Confidence 9999984 777655555554443
No 269
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.64 E-value=0.00047 Score=71.33 Aligned_cols=79 Identities=19% Similarity=0.138 Sum_probs=50.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccC------CCCC--------hHHHHHHHHHHHHHH
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------NAGE--------PAKLIRQRYREAADI 217 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~------~~Ge--------~~~~ir~~f~~A~~~ 217 (438)
|+.+...++|+|+||+|||+++..+|... +.++++++..+-... ..|. .+..+..+++ .
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~----~ 153 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILA----S 153 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHH----H
Confidence 55666789999999999999999998764 346777776432110 0000 0111222222 2
Q ss_pred HHhCCceeEEeccccccccC
Q 013704 218 IKKGKMCCLFINDLDAGAGR 237 (438)
Q Consensus 218 ~~~~~p~ILfIDEiD~l~~~ 237 (438)
++..+|.+|+||++..+...
T Consensus 154 i~~~~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 154 IEELKPDLVIIDSIQTVYSS 173 (372)
T ss_pred HHhcCCcEEEEcchHHhhcc
Confidence 33778999999999988643
No 270
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.64 E-value=0.00069 Score=70.79 Aligned_cols=157 Identities=14% Similarity=0.217 Sum_probs=88.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCCCCChHHHHH-HHHHHHH-----------HHHHhCCc
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIR-QRYREAA-----------DIIKKGKM 223 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~~Ge~~~~ir-~~f~~A~-----------~~~~~~~p 223 (438)
...++++|.+||||+++|+++.... +.+|+.++|+.+. +..+. .+|.... ..+....+
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~-------~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 234 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALN-------ESLLESELFGHEKGAFTGADKRREGRFVEADG 234 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCC-------HHHHHHHhcCCCCCCcCCCCcCCCCceeECCC
Confidence 4679999999999999999998764 4689999998654 12222 1222110 01124457
Q ss_pred eeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcce-
Q 013704 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME- 302 (438)
Q Consensus 224 ~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd- 302 (438)
..|||||+|.+... ++..|+..+++.....+.+. .....++.+|+||+..- ..+...|+|.
T Consensus 235 gtl~ldei~~l~~~-------------~q~~l~~~l~~~~~~~~~~~--~~~~~~~rii~~t~~~~---~~~~~~~~~~~ 296 (441)
T PRK10365 235 GTLFLDEIGDISPM-------------MQVRLLRAIQEREVQRVGSN--QTISVDVRLIAATHRDL---AAEVNAGRFRQ 296 (441)
T ss_pred CEEEEeccccCCHH-------------HHHHHHHHHccCcEEeCCCC--ceeeeceEEEEeCCCCH---HHHHHcCCchH
Confidence 89999999988543 22445555552221111111 11223567888886632 2344555663
Q ss_pred --------EEEecCCHHHHH----HHHHhhhCC---------CCCCHHHHHHHHc-cCCc
Q 013704 303 --------KFYWAPTREDRI----GVCSGIFRT---------DNVPKEDIVKLVD-TFPG 340 (438)
Q Consensus 303 --------~~i~lP~~e~R~----~Il~~~l~~---------~~v~~~~la~l~~-~~sg 340 (438)
..+.+|...+|. .+++.++.. ..++.+.+..+.. .|+|
T Consensus 297 ~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpg 356 (441)
T PRK10365 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 (441)
T ss_pred HHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCC
Confidence 344467766663 333333321 2356666666554 3444
No 271
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.64 E-value=7.2e-05 Score=70.10 Aligned_cols=121 Identities=17% Similarity=0.065 Sum_probs=57.4
Q ss_pred EEEEEcCCCCcHHHHHHHH-HHH---hCCceEEEecccccc----CCCCChHH--HH----------HHHHHHHHHHHHh
Q 013704 161 ILGIWGGKGQGKSFQCELV-FAK---MGINPIMMSAGELES----GNAGEPAK--LI----------RQRYREAADIIKK 220 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aI-A~~---lg~~~i~vs~~~l~s----~~~Ge~~~--~i----------r~~f~~A~~~~~~ 220 (438)
..+++|.||+|||+.|-.. ... .|.+++. +...|.- ...+.... .+ ...+..- ...
T Consensus 2 I~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 77 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDW---RKL 77 (193)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHH---TTS
T ss_pred EEEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhh---ccc
Confidence 4689999999999987555 433 2555443 3332221 11111000 00 0011111 112
Q ss_pred CCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCc
Q 013704 221 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 300 (438)
Q Consensus 221 ~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GR 300 (438)
...++|+|||+...++.+.... ......+ ..|.. -...+.-||++|.++..||+.+++ .
T Consensus 78 ~~~~liviDEa~~~~~~r~~~~--~~~~~~~-~~l~~----------------hRh~g~diiliTQ~~~~id~~ir~--l 136 (193)
T PF05707_consen 78 PKGSLIVIDEAQNFFPSRSWKG--KKVPEII-EFLAQ----------------HRHYGWDIILITQSPSQIDKFIRD--L 136 (193)
T ss_dssp GTT-EEEETTGGGTSB---T-T------HHH-HGGGG----------------CCCTT-EEEEEES-GGGB-HHHHC--C
T ss_pred CCCcEEEEECChhhcCCCcccc--ccchHHH-HHHHH----------------hCcCCcEEEEEeCCHHHHhHHHHH--H
Confidence 2689999999999998765310 1111222 22211 345678899999999999999987 7
Q ss_pred ceEEEe
Q 013704 301 MEKFYW 306 (438)
Q Consensus 301 fd~~i~ 306 (438)
.+..+.
T Consensus 137 ve~~~~ 142 (193)
T PF05707_consen 137 VEYHYH 142 (193)
T ss_dssp EEEEEE
T ss_pred HheEEE
Confidence 777776
No 272
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.63 E-value=2.9e-05 Score=71.51 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.++|.|+||+|||++++.+++++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999999997
No 273
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.60 E-value=0.00015 Score=65.86 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=24.4
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc---eEEEecc
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMSAG 193 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~---~i~vs~~ 193 (438)
.....+..++|+|++|+|||++++++...+... ++.+.+.
T Consensus 19 ~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~ 61 (185)
T PF13191_consen 19 AQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCD 61 (185)
T ss_dssp TSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEE
T ss_pred HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEe
Confidence 344567899999999999999999888875433 5555443
No 274
>PRK13695 putative NTPase; Provisional
Probab=97.60 E-value=0.00034 Score=64.08 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.++|.|+||+|||++++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988774
No 275
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.001 Score=66.60 Aligned_cols=133 Identities=13% Similarity=0.125 Sum_probs=82.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceE-------E------E---eccccccCC-CCC--hHHHHHHHHHHHHH
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPI-------M------M---SAGELESGN-AGE--PAKLIRQRYREAAD 216 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i-------~------v---s~~~l~s~~-~Ge--~~~~ir~~f~~A~~ 216 (438)
.+.|..+||+|| +||+.+|+.+|+.+-..-- . + +.+++.--. .|. .-..||++-+.+..
T Consensus 21 ~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~ 98 (290)
T PRK07276 21 DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQ 98 (290)
T ss_pred CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhh
Confidence 367889999996 6899999999998532100 0 0 011111000 111 23456665554431
Q ss_pred HHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCcccc
Q 013704 217 IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 296 (438)
Q Consensus 217 ~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLl 296 (438)
.-..+...|++||++|.+... ..+.|+..++ +...++.+|.+|+.++.|-|.++
T Consensus 99 ~p~~~~~kV~II~~ad~m~~~-------------AaNaLLKtLE-------------EPp~~t~~iL~t~~~~~lLpTI~ 152 (290)
T PRK07276 99 SGYEGKQQVFIIKDADKMHVN-------------AANSLLKVIE-------------EPQSEIYIFLLTNDENKVLPTIK 152 (290)
T ss_pred CcccCCcEEEEeehhhhcCHH-------------HHHHHHHHhc-------------CCCCCeEEEEEECChhhCchHHH
Confidence 111445579999999988432 2356777555 66777889999999999999999
Q ss_pred CCCcceEEEecCCHHHHHHHHH
Q 013704 297 RDGRMEKFYWAPTREDRIGVCS 318 (438)
Q Consensus 297 R~GRfd~~i~lP~~e~R~~Il~ 318 (438)
+ |+..+...|+.++-.+++.
T Consensus 153 S--Rcq~i~f~~~~~~~~~~L~ 172 (290)
T PRK07276 153 S--RTQIFHFPKNEAYLIQLLE 172 (290)
T ss_pred H--cceeeeCCCcHHHHHHHHH
Confidence 9 8855554455554445443
No 276
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.59 E-value=0.00048 Score=69.87 Aligned_cols=84 Identities=15% Similarity=0.182 Sum_probs=54.1
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCceEEEeccccccC----CCCC-hHH-------HHHHHHHHHHHHH
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG----NAGE-PAK-------LIRQRYREAADII 218 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs~~~l~s~----~~Ge-~~~-------~ir~~f~~A~~~~ 218 (438)
.|+..-..+.++||||||||+||-.++.+ .|..+++++...-.+. ..|- ..+ ...+.+..+..++
T Consensus 50 GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li 129 (325)
T cd00983 50 GGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLV 129 (325)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHH
Confidence 35666678999999999999999988765 4667777776321110 0000 000 1122333344455
Q ss_pred HhCCceeEEeccccccccC
Q 013704 219 KKGKMCCLFINDLDAGAGR 237 (438)
Q Consensus 219 ~~~~p~ILfIDEiD~l~~~ 237 (438)
+...+.+|+||-+-++.++
T Consensus 130 ~s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 130 RSGAVDLIVVDSVAALVPK 148 (325)
T ss_pred hccCCCEEEEcchHhhccc
Confidence 5788999999999999864
No 277
>PRK13947 shikimate kinase; Provisional
Probab=97.54 E-value=0.0003 Score=63.87 Aligned_cols=40 Identities=18% Similarity=0.087 Sum_probs=31.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCC
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 202 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge 202 (438)
.|+|.|+||||||++++.+|+.+|.+|+..+ .+.....|.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d--~~~~~~~g~ 42 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD--KEIEKMTGM 42 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc--hhhhhhcCC
Confidence 5899999999999999999999999986544 344343444
No 278
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.53 E-value=0.0007 Score=61.88 Aligned_cols=117 Identities=13% Similarity=0.227 Sum_probs=70.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH---hCCceEE---Eeccc-------------cc-----c--CCC-CChH---HHHHHH
Q 013704 161 ILGIWGGKGQGKSFQCELVFAK---MGINPIM---MSAGE-------------LE-----S--GNA-GEPA---KLIRQR 210 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~---lg~~~i~---vs~~~-------------l~-----s--~~~-Ge~~---~~ir~~ 210 (438)
-|.+|+++|.|||++|-.+|-. .|..+.. +.+.. +. . .+. .+.+ ...++.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~ 83 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEG 83 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHH
Confidence 4678999999999999888876 3554444 33310 00 0 000 1111 245567
Q ss_pred HHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCC
Q 013704 211 YREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 290 (438)
Q Consensus 211 f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~ 290 (438)
++.|.+.+......+|+|||+-....-.- ... ..++++++ ....+.=||+|++.+
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~a~~~gl------i~~----~~v~~ll~-------------~rp~~~evIlTGr~~-- 138 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINYALGYGL------LDV----EEVVDLLK-------------AKPEDLELVLTGRNA-- 138 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHhHhhCCC------CCH----HHHHHHHH-------------cCCCCCEEEEECCCC--
Confidence 77777777788899999999987654311 111 22344444 445677899999873
Q ss_pred CCccccCCCcceEEE
Q 013704 291 LYAPLIRDGRMEKFY 305 (438)
Q Consensus 291 Ld~aLlR~GRfd~~i 305 (438)
++.|+. +-|.+-
T Consensus 139 -p~~l~e--~AD~VT 150 (159)
T cd00561 139 -PKELIE--AADLVT 150 (159)
T ss_pred -CHHHHH--hCceee
Confidence 555555 444443
No 279
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.53 E-value=0.00088 Score=64.74 Aligned_cols=82 Identities=17% Similarity=0.160 Sum_probs=53.1
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCceEEEecccccc---------C-----------------------
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELES---------G----------------------- 198 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs~~~l~s---------~----------------------- 198 (438)
.|..+...+|++||||||||.+|..++.+ .|-+.++++..+-.. +
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~~~~~~~~g~l~~~d~~~~~~~ 95 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWDVRKYEEEGKFAIVDAFTGGIG 95 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCCHHHHhhcCCEEEEeccccccc
Confidence 36677789999999999999999876554 366666666432110 0
Q ss_pred -------CCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccc
Q 013704 199 -------NAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 235 (438)
Q Consensus 199 -------~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~ 235 (438)
|.-.....+..++....+.++..++.+|+||-+..+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~ 139 (237)
T TIGR03877 96 EAAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLY 139 (237)
T ss_pred cccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhh
Confidence 0001122344555555555557788899999998764
No 280
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.51 E-value=0.00059 Score=65.87 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=28.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCceEEEec
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 192 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs~ 192 (438)
++.....+++.||||||||++|..++.. -|...++++.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 4555678999999999999998655543 2556666664
No 281
>PRK06762 hypothetical protein; Provisional
Probab=97.51 E-value=0.00023 Score=64.47 Aligned_cols=38 Identities=18% Similarity=0.374 Sum_probs=31.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccc
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~ 196 (438)
|..++|.|+||+|||++|+.+++.++..++.++...+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 56789999999999999999999997667677765554
No 282
>PRK04296 thymidine kinase; Provisional
Probab=97.51 E-value=0.00071 Score=63.31 Aligned_cols=71 Identities=15% Similarity=0.204 Sum_probs=42.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEec--c--c----cccCCCCChH-----HHHHHHHHHHHHHHHhCCc
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA--G--E----LESGNAGEPA-----KLIRQRYREAADIIKKGKM 223 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~--~--~----l~s~~~Ge~~-----~~ir~~f~~A~~~~~~~~p 223 (438)
...+++||||+|||+++..++..+ +..++.+.. . . +.+. .|-.- .....+++.+.+ .....
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~-lg~~~~~~~~~~~~~~~~~~~~--~~~~~ 79 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSR-IGLSREAIPVSSDTDIFELIEE--EGEKI 79 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecC-CCCcccceEeCChHHHHHHHHh--hCCCC
Confidence 357899999999999988888774 555555533 1 1 1111 12110 112334444332 24577
Q ss_pred eeEEeccccc
Q 013704 224 CCLFINDLDA 233 (438)
Q Consensus 224 ~ILfIDEiD~ 233 (438)
.+|+|||+.-
T Consensus 80 dvviIDEaq~ 89 (190)
T PRK04296 80 DCVLIDEAQF 89 (190)
T ss_pred CEEEEEcccc
Confidence 8999999953
No 283
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.51 E-value=0.00094 Score=63.26 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=32.2
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEecc
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 193 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~ 193 (438)
.|+.....++++||||+|||++|..+|.+. +.++++++..
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 14 GGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 356666789999999999999999999774 5577777654
No 284
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.50 E-value=0.001 Score=63.79 Aligned_cols=38 Identities=13% Similarity=0.091 Sum_probs=30.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh----CCceEEEec
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 192 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l----g~~~i~vs~ 192 (438)
|..+...++|.|+||+|||+++..++... +.++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 55666789999999999999988877663 778877774
No 285
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.50 E-value=0.00042 Score=66.07 Aligned_cols=81 Identities=17% Similarity=0.112 Sum_probs=50.6
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHH---h-CCceEEEecccccc--------------------------CC---C
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAK---M-GINPIMMSAGELES--------------------------GN---A 200 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~---l-g~~~i~vs~~~l~s--------------------------~~---~ 200 (438)
.|+.+...+|+.||||+|||.++..++.+ . |-++++++..+-.. .+ .
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccc
Confidence 46777789999999999999999887654 2 77888877522110 00 0
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 013704 201 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (438)
Q Consensus 201 Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l 234 (438)
+.....+..++....+.++..++.+++||-+..+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 0001122333333334445777899999999998
No 286
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.49 E-value=0.0001 Score=70.77 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVF 180 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA 180 (438)
.|..+||||+||+|||++|+.++
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcC
Confidence 36779999999999999999986
No 287
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.48 E-value=0.00063 Score=64.99 Aligned_cols=83 Identities=14% Similarity=0.173 Sum_probs=52.1
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCceEEEeccccccC-C-------CC---------------
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG-N-------AG--------------- 201 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~l---------g~~~i~vs~~~l~s~-~-------~G--------------- 201 (438)
.|+.....+.|+||||||||++|..+|... +..+++++..+-... . .+
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~ 93 (235)
T cd01123 14 GGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARA 93 (235)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEec
Confidence 356677889999999999999999998652 256677776441110 0 00
Q ss_pred ChHHHHHHHHHHHHHHHHhC-CceeEEecccccccc
Q 013704 202 EPAKLIRQRYREAADIIKKG-KMCCLFINDLDAGAG 236 (438)
Q Consensus 202 e~~~~ir~~f~~A~~~~~~~-~p~ILfIDEiD~l~~ 236 (438)
.....+...+......+... .+.+|+||-+.++..
T Consensus 94 ~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~ 129 (235)
T cd01123 94 YNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFR 129 (235)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHH
Confidence 00111222333333444455 899999999998753
No 288
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.48 E-value=0.00024 Score=65.22 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=28.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEEEecc
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 193 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~ 193 (438)
+.|+|.||||+|||++|+.+++.++.+++.++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D 36 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVD 36 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence 5799999999999999999999988776655443
No 289
>PHA02624 large T antigen; Provisional
Probab=97.47 E-value=0.001 Score=72.06 Aligned_cols=139 Identities=15% Similarity=0.094 Sum_probs=79.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l 234 (438)
+++..+.++||||||||||+++.+|++.++-..+.++++.-.+ -|...- ...--+.+|||+-.-
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks------------~FwL~p----l~D~~~~l~dD~t~~ 490 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKL------------NFELGC----AIDQFMVVFEDVKGQ 490 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchh------------HHHhhh----hhhceEEEeeecccc
Confidence 5556679999999999999999999999966666676542111 122111 222457888988543
Q ss_pred ccCCCCCccccchhHHHH--HHHHHhhcCCCccccCCcccc-CCCCCceEEEecCCCCCCCccccCCCcceEEEec-CCH
Q 013704 235 AGRMGGTTQYTVNNQMVN--ATLMNIADNPTNVQLPGMYNQ-EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTR 310 (438)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~--~~Ll~Lld~~~~v~ldg~~~~-~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~l-P~~ 310 (438)
+-....-.. .+-+. .-|.+.+|=.-.|++|--... ....--|.|+|||.. .||.-+.- ||-+.+.+ |..
T Consensus 491 ~~~~~~Lp~----G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ney-~iP~T~~~--Rf~~~~~F~~k~ 563 (647)
T PHA02624 491 PADNKDLPS----GQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNEY-LIPQTVKA--RFAKVLDFKPKP 563 (647)
T ss_pred ccccccCCc----ccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecCc-ccchhHHH--HHHHhccccccH
Confidence 321100000 00111 235554441112333322111 112335789999974 47888887 89888884 666
Q ss_pred HHHHHH
Q 013704 311 EDRIGV 316 (438)
Q Consensus 311 e~R~~I 316 (438)
.-+..+
T Consensus 564 ~l~~sL 569 (647)
T PHA02624 564 YLKKSL 569 (647)
T ss_pred HHHHHH
Confidence 555443
No 290
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.44 E-value=0.00014 Score=72.16 Aligned_cols=56 Identities=20% Similarity=0.226 Sum_probs=45.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC--CceEEEeccccccCCCCChHHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAA 215 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg--~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~ 215 (438)
.+.+||.||||||||.||-+|+.++| .||.-+.++++.+.-+-.++-+ -+.|++|.
T Consensus 64 GravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKKTEvL-menfRRaI 121 (456)
T KOG1942|consen 64 GRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKKTEVL-MENFRRAI 121 (456)
T ss_pred CcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhhhHHHHH-HHHHHHHh
Confidence 47899999999999999999999986 5888899999887666655544 35566664
No 291
>PRK03839 putative kinase; Provisional
Probab=97.43 E-value=0.00012 Score=67.32 Aligned_cols=31 Identities=29% Similarity=0.477 Sum_probs=27.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEEe
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs 191 (438)
.|+|.|+||+|||++++.+|+.++++++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4889999999999999999999999886543
No 292
>PLN02200 adenylate kinase family protein
Probab=97.43 E-value=0.00016 Score=70.05 Aligned_cols=41 Identities=39% Similarity=0.691 Sum_probs=33.9
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccc
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~ 196 (438)
++.+.|..|++.||||+|||++|+.+|+++|+. .++.+++.
T Consensus 38 ~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdll 78 (234)
T PLN02200 38 SKEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLL 78 (234)
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHH
Confidence 345678899999999999999999999999865 56666554
No 293
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.41 E-value=0.00014 Score=64.45 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=27.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEEe
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs 191 (438)
.|+|+||||+|||++|+.+|+.++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 3789999999999999999999999877443
No 294
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.40 E-value=0.0023 Score=66.91 Aligned_cols=63 Identities=19% Similarity=0.161 Sum_probs=40.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh----CCceEEEeccccccCCCCChHHHHHHHHHHHHHHHH-hCCceeEEecc
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFIND 230 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~l----g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~-~~~p~ILfIDE 230 (438)
+....++++.||||||||+++.+++.+. | -.++.+.|. ..+-. ..+. -....+|+|||
T Consensus 206 ve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf-----------~~L~~---~~lg~v~~~DlLI~DE 268 (449)
T TIGR02688 206 VEPNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLF-----------YNIST---RQIGLVGRWDVVAFDE 268 (449)
T ss_pred HhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHH-----------HHHHH---HHHhhhccCCEEEEEc
Confidence 4456789999999999999999988772 2 112222222 11111 1111 56788999999
Q ss_pred ccccc
Q 013704 231 LDAGA 235 (438)
Q Consensus 231 iD~l~ 235 (438)
+..+.
T Consensus 269 vgylp 273 (449)
T TIGR02688 269 VATLK 273 (449)
T ss_pred CCCCc
Confidence 98754
No 295
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.40 E-value=0.001 Score=62.86 Aligned_cols=23 Identities=22% Similarity=-0.005 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 013704 160 LILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
..++|.||.|+|||++.+.|+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 67899999999999999999854
No 296
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.40 E-value=0.0011 Score=62.85 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=31.3
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---C------CceEEEecc
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM---G------INPIMMSAG 193 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~l---g------~~~i~vs~~ 193 (438)
.|+.....+.|+||||+|||++|..+|... + ..+++++..
T Consensus 14 GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 14 GGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred CCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecC
Confidence 356666789999999999999999998763 2 556777664
No 297
>PRK09354 recA recombinase A; Provisional
Probab=97.39 E-value=0.00056 Score=70.00 Aligned_cols=83 Identities=16% Similarity=0.203 Sum_probs=54.3
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCceEEEeccccccC-------------CCCChHHHHHHHHHHHHHH
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG-------------NAGEPAKLIRQRYREAADI 217 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs~~~l~s~-------------~~Ge~~~~ir~~f~~A~~~ 217 (438)
.|+..-..++|+||||||||+||-.++.+ .|-.+++++...-.+. +.-.+ ....+.+..+..+
T Consensus 55 GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp-~~~Eq~l~i~~~l 133 (349)
T PRK09354 55 GGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQP-DTGEQALEIADTL 133 (349)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecC-CCHHHHHHHHHHH
Confidence 35666678999999999999999887765 4666777765431110 00000 0122334444455
Q ss_pred HHhCCceeEEeccccccccC
Q 013704 218 IKKGKMCCLFINDLDAGAGR 237 (438)
Q Consensus 218 ~~~~~p~ILfIDEiD~l~~~ 237 (438)
++...+.+|+||=+-++.++
T Consensus 134 i~s~~~~lIVIDSvaaL~~~ 153 (349)
T PRK09354 134 VRSGAVDLIVVDSVAALVPK 153 (349)
T ss_pred hhcCCCCEEEEeChhhhcch
Confidence 56788999999999998764
No 298
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.39 E-value=0.00036 Score=65.72 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
.+++.||+|+|||+++++++..+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 478999999999999999998864
No 299
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.38 E-value=0.00069 Score=60.20 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=24.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 013704 162 LGIWGGKGQGKSFQCELVFAKMGINPIM 189 (438)
Q Consensus 162 lLL~GPPGtGKT~lA~aIA~~lg~~~i~ 189 (438)
++|+|+||+|||++|+.+++.++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 7899999999999999999998876543
No 300
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.37 E-value=0.00019 Score=78.78 Aligned_cols=56 Identities=18% Similarity=0.188 Sum_probs=41.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCc----eEEEeccc------cccCCCCChHHHHHHHHHHHH
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGIN----PIMMSAGE------LESGNAGEPAKLIRQRYREAA 215 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~----~i~vs~~~------l~s~~~Ge~~~~ir~~f~~A~ 215 (438)
.+++|+||||||||++|+++++.++.+ ++++.-+. +..-+.|...+.++..|..|+
T Consensus 38 ~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 103 (608)
T TIGR00764 38 RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPEDPNMPRIVEVPAGEGREIVEDYKKKAF 103 (608)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCCCCchHHHHHHHHhhchHHHHHHHHHhh
Confidence 489999999999999999999998754 23333332 223356777888888888876
No 301
>PRK00625 shikimate kinase; Provisional
Probab=97.37 E-value=0.00018 Score=66.50 Aligned_cols=31 Identities=10% Similarity=-0.047 Sum_probs=28.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEEe
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs 191 (438)
.|+|.|+||+|||++++.+|+.++++++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999999987765
No 302
>PRK14531 adenylate kinase; Provisional
Probab=97.36 E-value=0.0002 Score=66.44 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=26.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~ 189 (438)
..|++.||||+|||++|+.+|+.+|++.+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 358999999999999999999999877544
No 303
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.36 E-value=0.00096 Score=65.27 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=29.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh----CCceEEEec
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 192 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l----g~~~i~vs~ 192 (438)
|..+-..++|.||||+|||+++..++... |.++++++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 45555678999999999999998887763 667777765
No 304
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.36 E-value=0.00017 Score=66.21 Aligned_cols=33 Identities=36% Similarity=0.695 Sum_probs=27.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccc
Q 013704 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196 (438)
Q Consensus 162 lLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~ 196 (438)
|++.||||+|||++|+.+|+.+|+. .++.+++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~--~is~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT--HLSAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe--EEECChHH
Confidence 7899999999999999999999864 55655544
No 305
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.35 E-value=0.00015 Score=76.38 Aligned_cols=166 Identities=19% Similarity=0.271 Sum_probs=94.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccc-----cCCCCChHHHHHHHHHHHHH----HHHhCCce
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE-----SGNAGEPAKLIRQRYREAAD----IIKKGKMC 224 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~-----s~~~Ge~~~~ir~~f~~A~~----~~~~~~p~ 224 (438)
+....+||.|..||||-.+|++|-... ..||+.++|+-+. |...|. .+..|.-|.. ..+-....
T Consensus 244 ~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGH----eKGAFTGA~~~r~GrFElAdGG 319 (550)
T COG3604 244 KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGH----EKGAFTGAINTRRGRFELADGG 319 (550)
T ss_pred cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcc----cccccccchhccCcceeecCCC
Confidence 345789999999999999999998884 5689999997553 222232 1223333320 01133467
Q ss_pred eEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEE
Q 013704 225 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKF 304 (438)
Q Consensus 225 ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~ 304 (438)
-||+|||.-+-.. ++.-|+..+.+-+---+.|. ..-.-.|.||++||+- |-. ..+.|+|-.-
T Consensus 320 TLFLDEIGelPL~-------------lQaKLLRvLQegEieRvG~~--r~ikVDVRiIAATNRD--L~~-~V~~G~FRaD 381 (550)
T COG3604 320 TLFLDEIGELPLA-------------LQAKLLRVLQEGEIERVGGD--RTIKVDVRVIAATNRD--LEE-MVRDGEFRAD 381 (550)
T ss_pred eEechhhccCCHH-------------HHHHHHHHHhhcceeecCCC--ceeEEEEEEEeccchh--HHH-HHHcCcchhh
Confidence 8999999766332 33445554443222223332 1223468899999972 222 3455666442
Q ss_pred Ee---------cCCHHHH---HHHHHhhh-C---------CCCCCHHHHHHHHc-cCCcchhH
Q 013704 305 YW---------APTREDR---IGVCSGIF-R---------TDNVPKEDIVKLVD-TFPGQSID 344 (438)
Q Consensus 305 i~---------lP~~e~R---~~Il~~~l-~---------~~~v~~~~la~l~~-~~sgadi~ 344 (438)
+| +|-.-+| +-++-.+| . ...++.+.+..+.+ .|+|---+
T Consensus 382 LYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRE 444 (550)
T COG3604 382 LYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRE 444 (550)
T ss_pred hhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCcHHH
Confidence 22 3554444 22332222 1 23456667777665 46775443
No 306
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.34 E-value=0.00015 Score=65.30 Aligned_cols=32 Identities=31% Similarity=0.319 Sum_probs=29.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEEEe
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs 191 (438)
..||+.|-||||||++|..||+..++++|.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 45999999999999999999999999987765
No 307
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.34 E-value=0.002 Score=63.32 Aligned_cols=81 Identities=16% Similarity=0.130 Sum_probs=52.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCceEEEecccccc----------CCCCC---------------h---
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELES----------GNAGE---------------P--- 203 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs~~~l~s----------~~~Ge---------------~--- 203 (438)
|+.+...++++||||||||++|..+|.+ .|-++++++..+-.. .-.|- +
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~d~~~~~~~l~~id~~~~~~ 111 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGVDFDKIEENIILIDAASSTE 111 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCCCHHHHhCCEEEEECCCchh
Confidence 5666788999999999999999987765 355666666432110 00000 0
Q ss_pred -HHHHHHHHHHHHHHHHhCCceeEEeccccccc
Q 013704 204 -AKLIRQRYREAADIIKKGKMCCLFINDLDAGA 235 (438)
Q Consensus 204 -~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~ 235 (438)
...+..++......+++..+.+|+||=+-++.
T Consensus 112 ~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~ 144 (259)
T TIGR03878 112 LRENVPNLLATLAYAIKEYKVKNTVIDSITGLY 144 (259)
T ss_pred hhhhHHHHHHHHHHHHHhhCCCEEEEcCchHhc
Confidence 02234445555555567789999999887663
No 308
>PRK08233 hypothetical protein; Provisional
Probab=97.33 E-value=0.00087 Score=61.10 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=26.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC-CceEEEe
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMG-INPIMMS 191 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg-~~~i~vs 191 (438)
+..|.+.|+||+|||++|+.|+..++ ..++.++
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 46788999999999999999999986 3444443
No 309
>PRK14532 adenylate kinase; Provisional
Probab=97.33 E-value=0.0002 Score=66.30 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=27.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccc
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~ 196 (438)
.|+|.||||+|||++|+.+|+..|+.+ ++.+++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~--is~~d~l 35 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQ--LSTGDML 35 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE--EeCcHHH
Confidence 488999999999999999999998754 5554444
No 310
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.33 E-value=0.0014 Score=61.68 Aligned_cols=119 Identities=14% Similarity=0.105 Sum_probs=71.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH---hCCceEEEe---cc----cc--cc--------------CCCC----ChHHHHHH
Q 013704 160 LILGIWGGKGQGKSFQCELVFAK---MGINPIMMS---AG----EL--ES--------------GNAG----EPAKLIRQ 209 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs---~~----~l--~s--------------~~~G----e~~~~ir~ 209 (438)
..|.+||++|.|||+.|-.+|-. .|..+..+- +. +. .. .|.. +.....++
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~ 102 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAARE 102 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHHH
Confidence 46889999999999999988877 233332221 10 00 00 0111 12245667
Q ss_pred HHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC
Q 013704 210 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS 289 (438)
Q Consensus 210 ~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~ 289 (438)
.|+.|.+.+......+|++|||-...... -.....|. ++++ .....+=||+|++.+
T Consensus 103 ~~~~a~~~l~~~~ydlvVLDEi~~Al~~g------li~~eevi----~~L~-------------~rp~~~evVlTGR~~- 158 (191)
T PRK05986 103 GWEEAKRMLADESYDLVVLDELTYALKYG------YLDVEEVL----EALN-------------ARPGMQHVVITGRGA- 158 (191)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHCC------CccHHHHH----HHHH-------------cCCCCCEEEEECCCC-
Confidence 88888888888889999999997665431 11122333 3333 445667899999864
Q ss_pred CCCccccCCCcceEEEe
Q 013704 290 TLYAPLIRDGRMEKFYW 306 (438)
Q Consensus 290 ~Ld~aLlR~GRfd~~i~ 306 (438)
++.|+. +.|.+-+
T Consensus 159 --p~~Lie--~ADlVTE 171 (191)
T PRK05986 159 --PRELIE--AADLVTE 171 (191)
T ss_pred --CHHHHH--hCchhee
Confidence 455555 4444433
No 311
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.31 E-value=0.00071 Score=60.77 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=28.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCceEEEecccc
Q 013704 162 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 195 (438)
Q Consensus 162 lLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l 195 (438)
++|.|+||+|||++|+.++..+ +.+.+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 7899999999999999999998 666676765444
No 312
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.30 E-value=0.00066 Score=61.27 Aligned_cols=32 Identities=25% Similarity=0.377 Sum_probs=26.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEEEecccc
Q 013704 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 195 (438)
Q Consensus 162 lLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l 195 (438)
++|.||||+|||++|+.+++.++..++ +...+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 468999999999999999999986654 44443
No 313
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.28 E-value=0.00089 Score=69.62 Aligned_cols=79 Identities=14% Similarity=0.136 Sum_probs=49.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCc------eEEEecc--------------ccccCCCCChHHH-HH---HHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN------PIMMSAG--------------ELESGNAGEPAKL-IR---QRYRE 213 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~~------~i~vs~~--------------~l~s~~~Ge~~~~-ir---~~f~~ 213 (438)
+..-++|.||||+|||++++.|++....+ ++.+... .+.....+++... ++ .+.+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 34569999999999999999999985433 2222211 1111223333322 22 33444
Q ss_pred HHHHHHhCCceeEEecccccccc
Q 013704 214 AADIIKKGKMCCLFINDLDAGAG 236 (438)
Q Consensus 214 A~~~~~~~~p~ILfIDEiD~l~~ 236 (438)
|......++..||||||+..++.
T Consensus 247 Ae~~~~~GkdVVLlIDEitR~ar 269 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITRLAR 269 (415)
T ss_pred HHHHHHcCCCeEEEEEChhHHHH
Confidence 44444478889999999998754
No 314
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.0011 Score=74.88 Aligned_cols=137 Identities=18% Similarity=0.129 Sum_probs=94.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEEeccccc--cCCCCChHHHHHHHHHHHHHHHHhCCceeEE
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~l----------g~~~i~vs~~~l~--s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILf 227 (438)
++=+|.|.||+|||.+++-+|+.. +..++.++.+.+. .++.|+.+..++.+.+++.. .....|||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~---~~~gvILf 285 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVES---GGGGVILF 285 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhc---CCCcEEEE
Confidence 667889999999999999999982 3455666666444 45778888888888887651 45677999
Q ss_pred eccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEec-CC----CCCCCccccCCCcce
Q 013704 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG-ND----FSTLYAPLIRDGRME 302 (438)
Q Consensus 228 IDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TT-N~----~~~Ld~aLlR~GRfd 302 (438)
|||++-+.+.... . . .-...+.|-.++. ...+.+|+|| |. .-.-||+|-| ||+
T Consensus 286 igelh~lvg~g~~--~-~--~~d~~nlLkp~L~---------------rg~l~~IGatT~e~Y~k~iekdPalEr--rw~ 343 (898)
T KOG1051|consen 286 LGELHWLVGSGSN--Y-G--AIDAANLLKPLLA---------------RGGLWCIGATTLETYRKCIEKDPALER--RWQ 343 (898)
T ss_pred ecceeeeecCCCc--c-h--HHHHHHhhHHHHh---------------cCCeEEEecccHHHHHHHHhhCcchhh--Ccc
Confidence 9999999876432 1 1 1122222322222 3448899855 32 2356999999 999
Q ss_pred EEEe-cCCHHHHHHHHHhhh
Q 013704 303 KFYW-APTREDRIGVCSGIF 321 (438)
Q Consensus 303 ~~i~-lP~~e~R~~Il~~~l 321 (438)
...- +|+.++-..|++..-
T Consensus 344 l~~v~~pS~~~~~~iL~~l~ 363 (898)
T KOG1051|consen 344 LVLVPIPSVENLSLILPGLS 363 (898)
T ss_pred eeEeccCcccchhhhhhhhh
Confidence 9888 799888777776443
No 315
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.27 E-value=0.00025 Score=62.18 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=27.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEEEe
Q 013704 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (438)
Q Consensus 162 lLL~GPPGtGKT~lA~aIA~~lg~~~i~vs 191 (438)
|.+.|+||||||++|+.+|+.++++++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 789999999999999999999999987665
No 316
>PRK13948 shikimate kinase; Provisional
Probab=97.25 E-value=0.0006 Score=63.64 Aligned_cols=35 Identities=17% Similarity=0.005 Sum_probs=31.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEe
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs 191 (438)
++|..|+|.|++|+|||++++.+|+.++.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 46789999999999999999999999999988555
No 317
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.25 E-value=0.0018 Score=59.70 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=29.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccc
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 194 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~ 194 (438)
.+|+.||||+|||++|..++...+.+++++....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 5899999999999999999999888877776554
No 318
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.24 E-value=0.0033 Score=66.76 Aligned_cols=82 Identities=16% Similarity=0.142 Sum_probs=50.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCC------CCChHHHHH----HHHHHHHHHHHhC
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN------AGEPAKLIR----QRYREAADIIKKG 221 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~------~Ge~~~~ir----~~f~~A~~~~~~~ 221 (438)
|+.+...+||.|+||+|||+++..++... +-++++++..+-.... .|-....+. .-+....+.++..
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 56666789999999999999999987764 4567787764322100 010000000 0011222233477
Q ss_pred CceeEEecccccccc
Q 013704 222 KMCCLFINDLDAGAG 236 (438)
Q Consensus 222 ~p~ILfIDEiD~l~~ 236 (438)
+|.+|+||.+-.+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999998754
No 319
>PRK13949 shikimate kinase; Provisional
Probab=97.23 E-value=0.00029 Score=64.76 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEEe
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs 191 (438)
.|+|.||||+|||++++.+|+.++++++.++
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5899999999999999999999999877655
No 320
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.23 E-value=0.00036 Score=75.15 Aligned_cols=142 Identities=20% Similarity=0.256 Sum_probs=81.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHH------HHHHHHHHHHhCCceeEEecccc
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ------RYREAADIIKKGKMCCLFINDLD 232 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~------~f~~A~~~~~~~~p~ILfIDEiD 232 (438)
-.++++.|.||||||-+.+++++-+...++. ++. .+.-.|-+...+++ .+ +|-+++ -....|-.|||+|
T Consensus 378 Dinv~iVGDPgt~KSQfLk~v~~fsPR~vYt-sGk--aSSaAGLTaaVvkD~esgdf~i-EAGALm-LADnGICCIDEFD 452 (764)
T KOG0480|consen 378 DINVCIVGDPGTGKSQFLKAVCAFSPRSVYT-SGK--ASSAAGLTAAVVKDEESGDFTI-EAGALM-LADNGICCIDEFD 452 (764)
T ss_pred CceEEEeCCCCccHHHHHHHHhccCCcceEe-cCc--ccccccceEEEEecCCCCceee-ecCcEE-EccCceEEechhc
Confidence 3689999999999999999999987655433 221 01111111111110 11 111111 3445677899999
Q ss_pred ccccCCCCCccccchhHHHHHHHHHhhcCCCccc--cCCccccCCCCCceEEEecCCCC-------------CCCccccC
Q 013704 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQ--LPGMYNQEENPRVPIIVTGNDFS-------------TLYAPLIR 297 (438)
Q Consensus 233 ~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~--ldg~~~~~~~~~v~VI~TTN~~~-------------~Ld~aLlR 297 (438)
++--+. | ..+.+.++ -..++ -.|+ ...-..+.-||+|+|... .+.+|+++
T Consensus 453 KMd~~d----q---------vAihEAME-QQtISIaKAGv-~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS 517 (764)
T KOG0480|consen 453 KMDVKD----Q---------VAIHEAME-QQTISIAKAGV-VATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS 517 (764)
T ss_pred ccChHh----H---------HHHHHHHH-hheehheecce-EEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhh
Confidence 985431 1 12222221 01111 1122 112346677888988653 48999999
Q ss_pred CCcceEEEec---CCHHHHHHHHHhhhC
Q 013704 298 DGRMEKFYWA---PTREDRIGVCSGIFR 322 (438)
Q Consensus 298 ~GRfd~~i~l---P~~e~R~~Il~~~l~ 322 (438)
|||.+|-+ |++..-..|-++++.
T Consensus 518 --RFDL~FiLlD~~nE~~D~~ia~hIld 543 (764)
T KOG0480|consen 518 --RFDLFFILLDDCNEVVDYAIARHILD 543 (764)
T ss_pred --hhcEEEEEecCCchHHHHHHHHHHHH
Confidence 99998884 888877777766654
No 321
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.23 E-value=0.00028 Score=65.11 Aligned_cols=33 Identities=33% Similarity=0.502 Sum_probs=27.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccc
Q 013704 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196 (438)
Q Consensus 162 lLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~ 196 (438)
|+|.||||+|||++|+.||+.+|+.+ ++.+++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~--i~~~~l~ 34 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPH--ISTGDLL 34 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECcHHH
Confidence 78999999999999999999988765 4444443
No 322
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.23 E-value=0.00036 Score=67.49 Aligned_cols=38 Identities=29% Similarity=0.471 Sum_probs=30.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~ 196 (438)
+.|..|+|.||||+|||++|+.+|+.+|++++ +.+++.
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~i--s~gdll 41 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHI--NMGNIL 41 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCcEE--ECChHH
Confidence 34566999999999999999999999987654 444443
No 323
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.22 E-value=0.0033 Score=60.01 Aligned_cols=23 Identities=35% Similarity=0.354 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFA 181 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~ 181 (438)
++.++|.||.|+|||++.+.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47899999999999999999983
No 324
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.22 E-value=0.006 Score=59.45 Aligned_cols=138 Identities=14% Similarity=0.232 Sum_probs=76.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCC--ceEEEeccccccCCC--------C---Ch---HHHHHHHHHHHHHHHH
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESGNA--------G---EP---AKLIRQRYREAADIIK 219 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg~--~~i~vs~~~l~s~~~--------G---e~---~~~ir~~f~~A~~~~~ 219 (438)
.+.|-.+.+.|++|||||+++..+...+.- ..+.+-.+.....|. . .. +..+...-....+..+
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~ 89 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIK 89 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhh
Confidence 345667999999999999999999887643 223333222222110 0 00 1111111111111111
Q ss_pred ------hCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCc
Q 013704 220 ------KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 293 (438)
Q Consensus 220 ------~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~ 293 (438)
...+++|+|||+.. . . ...+.+...+.+ .+.-++.+|..+...-.||+
T Consensus 90 k~~~~k~~~~~LiIlDD~~~---~-----~--~k~~~l~~~~~~----------------gRH~~is~i~l~Q~~~~lp~ 143 (241)
T PF04665_consen 90 KSPQKKNNPRFLIILDDLGD---K-----K--LKSKILRQFFNN----------------GRHYNISIIFLSQSYFHLPP 143 (241)
T ss_pred hhcccCCCCCeEEEEeCCCC---c-----h--hhhHHHHHHHhc----------------ccccceEEEEEeeecccCCH
Confidence 13478999999732 1 0 112223333322 44677899999999999999
Q ss_pred cccCCCcceEEEec-CCHHHHHHHHHhhh
Q 013704 294 PLIRDGRMEKFYWA-PTREDRIGVCSGIF 321 (438)
Q Consensus 294 aLlR~GRfd~~i~l-P~~e~R~~Il~~~l 321 (438)
.++. -.+.++.+ -+..+...|++.+.
T Consensus 144 ~iR~--n~~y~i~~~~s~~dl~~i~~~~~ 170 (241)
T PF04665_consen 144 NIRS--NIDYFIIFNNSKRDLENIYRNMN 170 (241)
T ss_pred HHhh--cceEEEEecCcHHHHHHHHHhcc
Confidence 9866 67776654 34555555555443
No 325
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.21 E-value=0.0025 Score=60.67 Aligned_cols=80 Identities=16% Similarity=0.149 Sum_probs=50.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCceEEEeccccccC---------C-----CC--------Ch---HHH
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG---------N-----AG--------EP---AKL 206 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs~~~l~s~---------~-----~G--------e~---~~~ 206 (438)
|+.+...+++.|+||+|||.+|..++.+ .|-++++++..+-... + .+ .+ ...
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 91 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKTS 91 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHhh
Confidence 5666788999999999999999988765 3667777765321110 0 00 00 011
Q ss_pred HHHHHHHHHHHHHhCCceeEEecccccc
Q 013704 207 IRQRYREAADIIKKGKMCCLFINDLDAG 234 (438)
Q Consensus 207 ir~~f~~A~~~~~~~~p~ILfIDEiD~l 234 (438)
+..+......++++..+..++||-+..+
T Consensus 92 ~~~l~~~~~~~i~~~~~~~vVIDsls~l 119 (224)
T TIGR03880 92 LNRIKNELPILIKELGASRVVIDPISLL 119 (224)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcChHHH
Confidence 2233333344455678899999988876
No 326
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.21 E-value=0.0007 Score=65.75 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=28.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCceEEEecccc
Q 013704 162 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 195 (438)
Q Consensus 162 lLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l 195 (438)
|+|.|+||+|||++|+.+++.+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999987 566677765444
No 327
>PRK14527 adenylate kinase; Provisional
Probab=97.21 E-value=0.00031 Score=65.39 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=28.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceE
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPI 188 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i 188 (438)
..|..+++.||||+|||++|+.+|++.+...+
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~i 35 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKL 35 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 45778999999999999999999999987644
No 328
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.20 E-value=0.00098 Score=66.17 Aligned_cols=36 Identities=25% Similarity=0.184 Sum_probs=28.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEecccc
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 195 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l 195 (438)
+..++|.||||||||++|+.+++.+. .++.++...+
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~ 37 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDL 37 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHH
Confidence 45688999999999999999999983 3445555544
No 329
>PRK06547 hypothetical protein; Provisional
Probab=97.20 E-value=0.00039 Score=64.28 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=32.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCC
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 199 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~ 199 (438)
..|..|++.|++|+|||++|+.+++.++.+++.+ ..+...+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~--d~~~~~~ 53 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHL--DDLYPGW 53 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecc--cceeccc
Confidence 5578899999999999999999999988776644 4444333
No 330
>PRK06696 uridine kinase; Validated
Probab=97.20 E-value=0.00083 Score=64.26 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=34.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccc
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE 196 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~ 196 (438)
...|..|.+.|++|+|||++|+.|+..+ |.+++.++..++.
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 3468899999999999999999999998 6777777766554
No 331
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.20 E-value=0.00034 Score=65.05 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=27.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccc
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~ 196 (438)
.|+|.||||+||||+|+.|++.+++ ..++.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i--~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL--PHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC--cEEcHhHHh
Confidence 4789999999999999999999554 566655443
No 332
>PRK06217 hypothetical protein; Validated
Probab=97.17 E-value=0.00038 Score=64.48 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=27.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEEe
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs 191 (438)
.|+|.|+||+|||++|+++++.++++++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999998866544
No 333
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.16 E-value=0.0018 Score=61.32 Aligned_cols=30 Identities=27% Similarity=0.254 Sum_probs=26.9
Q ss_pred CCCCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 153 ~~~~~~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
.|+.+....++|.|+-|+|||+.++.|+.+
T Consensus 46 ~pg~k~d~~lvl~G~QG~GKStf~~~L~~~ 75 (198)
T PF05272_consen 46 EPGCKNDTVLVLVGKQGIGKSTFFRKLGPE 75 (198)
T ss_pred CCCCcCceeeeEecCCcccHHHHHHHHhHH
Confidence 578888889999999999999999999766
No 334
>PF14516 AAA_35: AAA-like domain
Probab=97.16 E-value=0.029 Score=57.07 Aligned_cols=165 Identities=15% Similarity=0.130 Sum_probs=87.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCCCCChHHHHH---------------------------
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIR--------------------------- 208 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~~Ge~~~~ir--------------------------- 208 (438)
..-+.++||..+|||++...+.+.+ |...+.++...+.+......++.++
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~ 110 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSK 110 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCCh
Confidence 4578999999999999998887764 7778888876654432222222111
Q ss_pred ----HHHHHHHHHHH-hCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEE
Q 013704 209 ----QRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283 (438)
Q Consensus 209 ----~~f~~A~~~~~-~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~ 283 (438)
..|++. +++ ..+|-||+|||+|+++.... ........|...-.. .. ....-.++.+|+
T Consensus 111 ~~~~~~~~~~--ll~~~~~~lVL~iDEiD~l~~~~~-------~~~dF~~~LR~~~~~-------~~-~~~~~~~L~li~ 173 (331)
T PF14516_consen 111 ISCTEYFEEY--LLKQIDKPLVLFIDEIDRLFEYPQ-------IADDFFGLLRSWYEQ-------RK-NNPIWQKLRLIL 173 (331)
T ss_pred hhHHHHHHHH--HHhcCCCCEEEEEechhhhccCcc-------hHHHHHHHHHHHHHh-------cc-cCcccceEEEEE
Confidence 111111 122 46889999999999975311 011233333331110 00 000112333444
Q ss_pred ecCC-CCCCCccccCCCcceEEEecC--CHHHHHHHHHhhhCCCCCCHHHHHHHHccCCcch
Q 013704 284 TGND-FSTLYAPLIRDGRMEKFYWAP--TREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQS 342 (438)
Q Consensus 284 TTN~-~~~Ld~aLlR~GRfd~~i~lP--~~e~R~~Il~~~l~~~~v~~~~la~l~~~~sgad 342 (438)
+... .......=..|.-+...+.+| +.++-..+++.+- ...+...+..+.+-..|.+
T Consensus 174 ~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~--~~~~~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 174 AGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYG--LEFSQEQLEQLMDWTGGHP 233 (331)
T ss_pred ecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhh--ccCCHHHHHHHHHHHCCCH
Confidence 3322 121111123444444455554 6777777777653 2345555666666666655
No 335
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.15 E-value=0.0028 Score=58.69 Aligned_cols=118 Identities=14% Similarity=0.176 Sum_probs=71.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH---hCCceEEE---ec----ccccc---------------CCCC----ChHHHHHHHH
Q 013704 161 ILGIWGGKGQGKSFQCELVFAK---MGINPIMM---SA----GELES---------------GNAG----EPAKLIRQRY 211 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~---lg~~~i~v---s~----~~l~s---------------~~~G----e~~~~ir~~f 211 (438)
-+.+|+++|.|||+.|-.+|-. .|.+++.+ .+ ++... .|.. +..+..++.+
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~ 86 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAAW 86 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHHH
Confidence 4668899999999999988877 35555332 11 22100 0111 1124566788
Q ss_pred HHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCC
Q 013704 212 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTL 291 (438)
Q Consensus 212 ~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~L 291 (438)
+.|++.+......+|++||+-......- .....|. ++++ ....++=||+|+..+
T Consensus 87 ~~a~~~l~~~~~DlvVLDEi~~A~~~gl------i~~~~v~----~lL~-------------~rp~~~evVlTGR~~--- 140 (173)
T TIGR00708 87 QHAKEMLADPELDLVLLDELTYALKYGY------LDVEEVV----EALQ-------------ERPGHQHVIITGRGC--- 140 (173)
T ss_pred HHHHHHHhcCCCCEEEehhhHHHHHCCC------cCHHHHH----HHHH-------------hCCCCCEEEEECCCC---
Confidence 8888777788899999999976654311 1112333 3333 445677899999764
Q ss_pred CccccCCCcceEEEe
Q 013704 292 YAPLIRDGRMEKFYW 306 (438)
Q Consensus 292 d~aLlR~GRfd~~i~ 306 (438)
++.|+. .-|.+-+
T Consensus 141 p~~l~e--~AD~VTE 153 (173)
T TIGR00708 141 PQDLLE--LADLVTE 153 (173)
T ss_pred CHHHHH--hCceeee
Confidence 555655 5554443
No 336
>PRK14530 adenylate kinase; Provisional
Probab=97.15 E-value=0.00042 Score=65.81 Aligned_cols=29 Identities=21% Similarity=0.384 Sum_probs=25.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~ 189 (438)
.|+|.||||+|||++|+.+|+.++++++.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~ 33 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVT 33 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 48889999999999999999999977553
No 337
>PRK04328 hypothetical protein; Provisional
Probab=97.14 E-value=0.0019 Score=63.07 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=28.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCceEEEec
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 192 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs~ 192 (438)
|+.+...+|++||||||||.+|..++.+ .|-+.++++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 5666788999999999999998876654 3455555554
No 338
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.14 E-value=0.00077 Score=66.80 Aligned_cols=25 Identities=16% Similarity=-0.065 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
.+++|.||||+|||++.++++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 6899999999999999999999864
No 339
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.13 E-value=0.00048 Score=63.13 Aligned_cols=29 Identities=41% Similarity=0.690 Sum_probs=25.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceE
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPI 188 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i 188 (438)
..+++.||||+|||++|+.+++++|...+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~ 32 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHL 32 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 36888999999999999999999986644
No 340
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.12 E-value=0.00099 Score=64.25 Aligned_cols=76 Identities=13% Similarity=0.064 Sum_probs=46.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC--------CceEEEec-cccccCCCCChHHHHHHHHHH---------HHHHHHh
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMG--------INPIMMSA-GELESGNAGEPAKLIRQRYRE---------AADIIKK 220 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg--------~~~i~vs~-~~l~s~~~Ge~~~~ir~~f~~---------A~~~~~~ 220 (438)
-.+.|+.||||||||++.+-||.-+. ..+..++- +++.....|-+.--+-...+- -..+++.
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence 35689999999999999999998742 22333332 344444444332221111111 1234458
Q ss_pred CCceeEEecccccc
Q 013704 221 GKMCCLFINDLDAG 234 (438)
Q Consensus 221 ~~p~ILfIDEiD~l 234 (438)
+.|.|+++|||...
T Consensus 217 m~PEViIvDEIGt~ 230 (308)
T COG3854 217 MSPEVIIVDEIGTE 230 (308)
T ss_pred cCCcEEEEeccccH
Confidence 99999999999643
No 341
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.09 E-value=0.00044 Score=63.16 Aligned_cols=27 Identities=22% Similarity=0.376 Sum_probs=25.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceE
Q 013704 162 LGIWGGKGQGKSFQCELVFAKMGINPI 188 (438)
Q Consensus 162 lLL~GPPGtGKT~lA~aIA~~lg~~~i 188 (438)
|-+.||||||||++|+.||+.+|++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~v 29 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLV 29 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCcee
Confidence 678999999999999999999999965
No 342
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.09 E-value=0.0026 Score=69.31 Aligned_cols=69 Identities=20% Similarity=0.164 Sum_probs=48.8
Q ss_pred ccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC----ceEEEecccccc
Q 013704 128 TLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI----NPIMMSAGELES 197 (438)
Q Consensus 128 ~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~----~~i~vs~~~l~s 197 (438)
+..+..+|+.|+-.-+..+...+.. +..+.+..|+|+|+||+|||++|+++++.++. +++.++...+..
T Consensus 362 l~~G~~pP~~f~rpeV~~iL~~~~~-~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~ 434 (568)
T PRK05537 362 LREGLEIPEWFSFPEVVAELRRTYP-PRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRK 434 (568)
T ss_pred HHCCCCCChhhcHHHHHHHHHHHhc-cccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHH
Confidence 3445566666766555656655543 33466778999999999999999999999875 456666655543
No 343
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.09 E-value=0.0014 Score=67.68 Aligned_cols=77 Identities=18% Similarity=0.225 Sum_probs=47.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC-----ceEEEec---------------cccccCCCCChH-HHHH---HHHHHHH
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGI-----NPIMMSA---------------GELESGNAGEPA-KLIR---QRYREAA 215 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~-----~~i~vs~---------------~~l~s~~~Ge~~-~~ir---~~f~~A~ 215 (438)
.-.||.||||||||++++.+++.+.. .++.+-. ..+...+..++. ..++ .+...|.
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae 213 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAK 213 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHH
Confidence 45799999999999999999998633 2233211 111111211222 2222 2334455
Q ss_pred HHHHhCCceeEEecccccccc
Q 013704 216 DIIKKGKMCCLFINDLDAGAG 236 (438)
Q Consensus 216 ~~~~~~~p~ILfIDEiD~l~~ 236 (438)
...+..+..+|++||+..++.
T Consensus 214 ~f~~~GkdVVLvlDsltr~A~ 234 (380)
T PRK12608 214 RLVEQGKDVVILLDSLTRLAR 234 (380)
T ss_pred HHHHcCCCEEEEEeCcHHHHH
Confidence 555588999999999997754
No 344
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.08 E-value=0.0023 Score=64.24 Aligned_cols=40 Identities=18% Similarity=0.419 Sum_probs=31.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCceEEEeccc
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGE 194 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l---------g~~~i~vs~~~ 194 (438)
|+.....++++||||+|||.+|-.+|... +-..++++..+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 56667888999999999999999998763 23677777654
No 345
>PRK05973 replicative DNA helicase; Provisional
Probab=97.08 E-value=0.0092 Score=58.06 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=30.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEec
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 192 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~ 192 (438)
|..+...++|.|+||+|||+++-.++.+. |-++++++.
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 56666789999999999999988877653 667766664
No 346
>PRK04040 adenylate kinase; Provisional
Probab=97.07 E-value=0.00061 Score=63.81 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=25.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh--CCce
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM--GINP 187 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l--g~~~ 187 (438)
|..++++|+||||||++++.+++.+ +..+
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~ 32 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKI 32 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeE
Confidence 5779999999999999999999999 5554
No 347
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.07 E-value=0.003 Score=58.28 Aligned_cols=73 Identities=22% Similarity=0.191 Sum_probs=46.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHH-------------HHHHHHHHHh-CCceeEE
Q 013704 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQR-------------YREAADIIKK-GKMCCLF 227 (438)
Q Consensus 162 lLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~-------------f~~A~~~~~~-~~p~ILf 227 (438)
+|+.||||+|||++|..++...+.+++++....-. -.+..+.|... .....+.++. ..+.+|+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~---d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VL 78 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAF---DDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVL 78 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcC---CHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEE
Confidence 68999999999999999999888788887655322 11223332221 0011122222 2577899
Q ss_pred eccccccccC
Q 013704 228 INDLDAGAGR 237 (438)
Q Consensus 228 IDEiD~l~~~ 237 (438)
||-+..+...
T Consensus 79 IDclt~~~~n 88 (169)
T cd00544 79 IDCLTLWVTN 88 (169)
T ss_pred EEcHhHHHHH
Confidence 9998877654
No 348
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.06 E-value=0.0018 Score=72.50 Aligned_cols=84 Identities=18% Similarity=0.179 Sum_probs=52.9
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCceEEEeccccccC----CCCCh--------HHHHHHHHHHHHHHH
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG----NAGEP--------AKLIRQRYREAADII 218 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs~~~l~s~----~~Ge~--------~~~ir~~f~~A~~~~ 218 (438)
.|+.....++++||||||||+||..++.. .|-.+++++..+-... -.|-. .......+..+..++
T Consensus 55 GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv 134 (790)
T PRK09519 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLI 134 (790)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHh
Confidence 35666788999999999999999665543 4556667765432210 00000 001112333444455
Q ss_pred HhCCceeEEeccccccccC
Q 013704 219 KKGKMCCLFINDLDAGAGR 237 (438)
Q Consensus 219 ~~~~p~ILfIDEiD~l~~~ 237 (438)
+...+.+|+||-+.++.++
T Consensus 135 ~~~~~~LVVIDSI~aL~~r 153 (790)
T PRK09519 135 RSGALDIVVIDSVAALVPR 153 (790)
T ss_pred hcCCCeEEEEcchhhhcch
Confidence 5778999999999999863
No 349
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.06 E-value=0.0017 Score=61.30 Aligned_cols=34 Identities=26% Similarity=0.473 Sum_probs=25.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEec
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 192 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~ 192 (438)
|+.++|.||+|+|||+.+-.+|..+ +..+-.++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~ 37 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISA 37 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecC
Confidence 7789999999999999888888773 444444444
No 350
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.05 E-value=0.0013 Score=67.26 Aligned_cols=68 Identities=16% Similarity=0.186 Sum_probs=41.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC----ceEEEecc-ccc---------cCCCCChHHHHHHHHHHHHHHHHhCCcee
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGI----NPIMMSAG-ELE---------SGNAGEPAKLIRQRYREAADIIKKGKMCC 225 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~----~~i~vs~~-~l~---------s~~~Ge~~~~ir~~f~~A~~~~~~~~p~I 225 (438)
..+++.||+|+|||++.+++...+.- .++.+.-+ ++. ..-.|.........++.+. ...|.+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~l----r~~pd~ 198 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAAL----REDPDV 198 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhh----ccCCCE
Confidence 56889999999999999999987642 23332211 111 1112221112233344343 789999
Q ss_pred EEeccc
Q 013704 226 LFINDL 231 (438)
Q Consensus 226 LfIDEi 231 (438)
|++||+
T Consensus 199 i~vgEi 204 (343)
T TIGR01420 199 ILIGEM 204 (343)
T ss_pred EEEeCC
Confidence 999998
No 351
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.05 E-value=0.00052 Score=63.42 Aligned_cols=32 Identities=19% Similarity=0.136 Sum_probs=29.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEEEe
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs 191 (438)
..|.|.|++|+|||++.+++|+.++.+|+.++
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46889999999999999999999999988665
No 352
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.05 E-value=0.0052 Score=57.03 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=22.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
+.+...+.|.||.|+|||+|.+++...
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 345567899999999999999999743
No 353
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.04 E-value=0.0047 Score=62.38 Aligned_cols=40 Identities=15% Similarity=0.322 Sum_probs=31.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCceEEEeccc
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGE 194 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l---------g~~~i~vs~~~ 194 (438)
|+.....++|+||||||||.+|..+|... +..+++++..+
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 56677889999999999999999998763 33677777644
No 354
>PRK14528 adenylate kinase; Provisional
Probab=97.03 E-value=0.00065 Score=63.31 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=25.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~ 189 (438)
.+++.||||+|||++|+.+++..|++.+.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is 31 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIS 31 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 48899999999999999999999987544
No 355
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.03 E-value=0.0007 Score=61.59 Aligned_cols=30 Identities=20% Similarity=0.184 Sum_probs=27.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEE
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~v 190 (438)
.|+|.|+||||||++++.+|+.+|++++..
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 588899999999999999999999987754
No 356
>PRK13946 shikimate kinase; Provisional
Probab=97.03 E-value=0.00057 Score=63.41 Aligned_cols=34 Identities=18% Similarity=0.095 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEe
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs 191 (438)
.++.|+|.|+||||||++++.+|+.+|++|+..+
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 3467999999999999999999999999987655
No 357
>PRK02496 adk adenylate kinase; Provisional
Probab=97.02 E-value=0.00059 Score=62.99 Aligned_cols=29 Identities=28% Similarity=0.294 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~ 189 (438)
-+++.||||+|||++|+.+|+.++++.+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~ 31 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIS 31 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 48899999999999999999999876543
No 358
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.01 E-value=0.0028 Score=58.61 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
.+.-.++|.||+|||||++.+.+|.-
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhc
Confidence 33456899999999999999999986
No 359
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.01 E-value=0.0096 Score=56.76 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=28.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCceEEEec
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 192 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs~ 192 (438)
|+.....++++||||+|||+++..++.+ .|-+.++++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 5666788999999999999999887653 2445556554
No 360
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.00 E-value=0.0026 Score=59.76 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=34.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh-CCceEEEeccccccCC
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESGN 199 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~l-g~~~i~vs~~~l~s~~ 199 (438)
...|..+++.|+||+|||+++..+..++ +-.++.++..++....
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~ 56 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH 56 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc
Confidence 4679999999999999999999999998 7788999988876544
No 361
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.99 E-value=0.00063 Score=64.38 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=25.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 013704 162 LGIWGGKGQGKSFQCELVFAKMGINPIM 189 (438)
Q Consensus 162 lLL~GPPGtGKT~lA~aIA~~lg~~~i~ 189 (438)
|+|.||||+|||++|+.+|+..|+..+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 7899999999999999999999876544
No 362
>PF13245 AAA_19: Part of AAA domain
Probab=96.98 E-value=0.0013 Score=52.71 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCcHH-HHHHHHHHHh------CCceEEEecc
Q 013704 160 LILGIWGGKGQGKS-FQCELVFAKM------GINPIMMSAG 193 (438)
Q Consensus 160 ~glLL~GPPGtGKT-~lA~aIA~~l------g~~~i~vs~~ 193 (438)
..+++.|||||||| ++++.++... +-.++.++..
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 44667999999999 5566666655 4455555543
No 363
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.97 E-value=0.00072 Score=64.20 Aligned_cols=34 Identities=35% Similarity=0.519 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccc
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~ 196 (438)
-|+++||||+|||++|+.+|+.+|+..+ +.+++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~i--s~~dl~ 35 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHI--STGDML 35 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE--ECCccH
Confidence 3889999999999999999999987654 444443
No 364
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.96 E-value=0.0014 Score=65.10 Aligned_cols=74 Identities=15% Similarity=0.284 Sum_probs=52.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH------hCCceEEEeccccccCCCCChHH-----HHHHHHHHHH----HHHHhCCc
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK------MGINPIMMSAGELESGNAGEPAK-----LIRQRYREAA----DIIKKGKM 223 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~------lg~~~i~vs~~~l~s~~~Ge~~~-----~ir~~f~~A~----~~~~~~~p 223 (438)
..-+||.||.|.||++||+.|.+- +.-+|+.++|..|.. .+.- .++..|.-|. .+++....
T Consensus 208 r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrg----d~amsalfghvkgaftga~~~r~gllrsadg 283 (531)
T COG4650 208 RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRG----DTAMSALFGHVKGAFTGARESREGLLRSADG 283 (531)
T ss_pred cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecC----chHHHHHHhhhccccccchhhhhhhhccCCC
Confidence 345999999999999999999875 566899999988863 3211 1222332221 23446678
Q ss_pred eeEEecccccccc
Q 013704 224 CCLFINDLDAGAG 236 (438)
Q Consensus 224 ~ILfIDEiD~l~~ 236 (438)
.+||+|||..+..
T Consensus 284 gmlfldeigelga 296 (531)
T COG4650 284 GMLFLDEIGELGA 296 (531)
T ss_pred ceEehHhhhhcCc
Confidence 8999999987754
No 365
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.96 E-value=0.00086 Score=56.59 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
+++++||+|+|||+++...+.++.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELL 25 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHH
Confidence 589999999999999888887753
No 366
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.96 E-value=0.0017 Score=66.56 Aligned_cols=77 Identities=19% Similarity=0.331 Sum_probs=44.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh-----CCceEEEecc-ccccC----CCCCh-HHHHHHHHHHHHHHHH--------hC
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAG-ELESG----NAGEP-AKLIRQRYREAADIIK--------KG 221 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~l-----g~~~i~vs~~-~l~s~----~~Ge~-~~~ir~~f~~A~~~~~--------~~ 221 (438)
.+++.|.||||||.+|-.+++++ +...+.+... .+... ..... ....+..+......+. ..
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 82 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDKEKN 82 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcccchhhhhhhhhHHHHhhcccccccCC
Confidence 57899999999999999999998 3333333332 12110 00000 0111122222222222 23
Q ss_pred CceeEEeccccccccC
Q 013704 222 KMCCLFINDLDAGAGR 237 (438)
Q Consensus 222 ~p~ILfIDEiD~l~~~ 237 (438)
.-.+||+||++.+..+
T Consensus 83 ~~DviivDEAqrl~~~ 98 (352)
T PF09848_consen 83 KYDVIIVDEAQRLRTK 98 (352)
T ss_pred cCCEEEEehhHhhhhc
Confidence 4579999999999874
No 367
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.95 E-value=0.0024 Score=65.84 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=23.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
..+|+||.|||.-|||||+|--.....
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~ 137 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDA 137 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhc
Confidence 356999999999999999999888754
No 368
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.94 E-value=0.0039 Score=56.87 Aligned_cols=41 Identities=20% Similarity=0.367 Sum_probs=34.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCC
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN 199 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~ 199 (438)
|..|.|.|.||+|||++|+++.+.+ |.+.+.+++..+...+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l 45 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGL 45 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhcc
Confidence 5678999999999999999999985 7889999988776544
No 369
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.93 E-value=0.00099 Score=61.34 Aligned_cols=34 Identities=15% Similarity=0.058 Sum_probs=29.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEec
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~ 192 (438)
+..|+|.||+|+|||++++.+|+.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4569999999999999999999999988776653
No 370
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.90 E-value=0.00073 Score=62.32 Aligned_cols=30 Identities=30% Similarity=0.602 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEEe
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs 191 (438)
.|++.|.||||||++|+.++ ++|.+.+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 48899999999999999999 9999877654
No 371
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.90 E-value=0.001 Score=68.70 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=23.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
......++|.||+|+|||+++..+|..
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 344678999999999999999999986
No 372
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.90 E-value=0.0024 Score=69.09 Aligned_cols=35 Identities=29% Similarity=0.210 Sum_probs=27.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCC-ceEEEec
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGI-NPIMMSA 192 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~-~~i~vs~ 192 (438)
....++|.||||+|||+||++||+.+.- +++.+.+
T Consensus 102 ~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 102 KKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred CCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 3468999999999999999999999754 4444443
No 373
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.89 E-value=0.0018 Score=65.25 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=41.6
Q ss_pred CChhhHHHHHHHHHHhhhc-CCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEe
Q 013704 134 IAPAFMDKVVVHITKNFLN-LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (438)
Q Consensus 134 i~~~~~d~~~~~i~k~~l~-~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs 191 (438)
++|+-. +.+..+.+.++. .....++..|+|.|+||||||++++.+|+.+|++|+.++
T Consensus 108 l~~~~~-~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 108 ASPAQL-ARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CCHHHH-HHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 344433 344555565554 234566788999999999999999999999999988443
No 374
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.89 E-value=0.0034 Score=73.82 Aligned_cols=150 Identities=16% Similarity=0.190 Sum_probs=91.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccc-------cCCCCChHHHHHHHHHHHHHHHHhCCceeEEec
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-------SGNAGEPAKLIRQRYREAADIIKKGKMCCLFIN 229 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~-------s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfID 229 (438)
...+++||.|.||+|||+|..++|+++|-.+++++.++-. +...++....+ +|..|--+..-....-+++|
T Consensus 1541 qv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef--~w~dapfL~amr~G~WVlLD 1618 (4600)
T COG5271 1541 QVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEF--RWMDAPFLHAMRDGGWVLLD 1618 (4600)
T ss_pred hcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCcee--EecccHHHHHhhcCCEEEee
Confidence 3456799999999999999999999999999999876422 22233311111 22222111112345567789
Q ss_pred cccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCcccc-CCCCCceEEEecCCC------CCCCccccCCCcce
Q 013704 230 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ-EENPRVPIIVTGNDF------STLYAPLIRDGRME 302 (438)
Q Consensus 230 EiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~-~~~~~v~VI~TTN~~------~~Ld~aLlR~GRfd 302 (438)
|+.-. .|-|..-|-.++|.-....++-.-.. .-.++..|.+|-|.- ..||..++. ||.
T Consensus 1619 EiNLa-------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n--RFs 1683 (4600)
T COG5271 1619 EINLA-------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN--RFS 1683 (4600)
T ss_pred hhhhh-------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--hhh
Confidence 98633 23455556666664433333322000 223666777777643 369999999 998
Q ss_pred EEEe-cCCHHHHHHHHHhhhCC
Q 013704 303 KFYW-APTREDRIGVCSGIFRT 323 (438)
Q Consensus 303 ~~i~-lP~~e~R~~Il~~~l~~ 323 (438)
.++. .-+.++...|...++..
T Consensus 1684 vV~~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1684 VVKMDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred eEEecccccchHHHHHHhhCCc
Confidence 8776 46666677776666643
No 375
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.88 E-value=0.0049 Score=56.16 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh---CCceEEEecc
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 193 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~ 193 (438)
.+++.||||+|||+++..++..+ +..+..+++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 47899999999999999998874 6667666655
No 376
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.87 E-value=0.0086 Score=60.60 Aligned_cols=83 Identities=10% Similarity=-0.007 Sum_probs=50.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH---------hCCceEEEecccccc---------CCCCChH------------
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAK---------MGINPIMMSAGELES---------GNAGEPA------------ 204 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~---------lg~~~i~vs~~~l~s---------~~~Ge~~------------ 204 (438)
|+.....+.|+||||+|||.+|..+|-. .+...++++..+-.+ .+--+.+
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~ 171 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAY 171 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCC
Confidence 5666688899999999999999887743 234667777543110 0000011
Q ss_pred --HHHHHHHHHHHHHHHhCCceeEEeccccccccC
Q 013704 205 --KLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 237 (438)
Q Consensus 205 --~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~ 237 (438)
...-+++......+....+.+|+||-+-++...
T Consensus 172 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~ 206 (313)
T TIGR02238 172 TSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRV 206 (313)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhh
Confidence 111122233222334567899999999888654
No 377
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.87 E-value=0.011 Score=60.51 Aligned_cols=82 Identities=10% Similarity=-0.038 Sum_probs=49.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCceEEEecccccc---------CC---------------CC
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELES---------GN---------------AG 201 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l---------g~~~i~vs~~~l~s---------~~---------------~G 201 (438)
|+..-....|+||||||||.+|..+|-.. +-.+++++...-++ .+ .-
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 56666788899999999999999887432 24567776633100 00 00
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceeEEeccccccccC
Q 013704 202 EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 237 (438)
Q Consensus 202 e~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~ 237 (438)
..+. +..++......+....+.+|+||-+-+++..
T Consensus 202 ~~e~-~~~~l~~l~~~i~~~~~~LvVIDSital~r~ 236 (344)
T PLN03187 202 TYEH-QYNLLLGLAAKMAEEPFRLLIVDSVIALFRV 236 (344)
T ss_pred CHHH-HHHHHHHHHHHHHhcCCCEEEEeCcHHhhhc
Confidence 1111 1122222223344667999999999887654
No 378
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.87 E-value=0.0092 Score=55.43 Aligned_cols=20 Identities=30% Similarity=0.027 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 013704 162 LGIWGGKGQGKSFQCELVFA 181 (438)
Q Consensus 162 lLL~GPPGtGKT~lA~aIA~ 181 (438)
++|+||.|.|||++.+.++-
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68999999999999999993
No 379
>PRK01184 hypothetical protein; Provisional
Probab=96.86 E-value=0.0011 Score=61.17 Aligned_cols=30 Identities=33% Similarity=0.542 Sum_probs=25.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEEE
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~v 190 (438)
..|+|.||||+|||++++ ++++.|++++..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 368899999999999998 788899876544
No 380
>PRK14974 cell division protein FtsY; Provisional
Probab=96.86 E-value=0.0093 Score=60.94 Aligned_cols=37 Identities=16% Similarity=0.321 Sum_probs=28.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEecc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 193 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~ 193 (438)
..|..++|.||||+|||+++..+|..+ |..+..+.+.
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 357899999999999999888888764 5555555543
No 381
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.86 E-value=0.0027 Score=62.90 Aligned_cols=73 Identities=15% Similarity=0.143 Sum_probs=42.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHH---hCCceEEEeccccc---cCC-CCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 013704 162 LGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELE---SGN-AGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (438)
Q Consensus 162 lLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs~~~l~---s~~-~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l 234 (438)
|+|+|.||+|||++|+.|++. .+..++.++...+. +.| ....++.+|..+..+.+-. -.+..|+|+|+.-.+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~-ls~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERA-LSKDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHH-HTT-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHh-hccCeEEEEeCCchH
Confidence 789999999999999999998 45677777754443 122 2345777777766554222 345589999987655
Q ss_pred c
Q 013704 235 A 235 (438)
Q Consensus 235 ~ 235 (438)
-
T Consensus 83 K 83 (270)
T PF08433_consen 83 K 83 (270)
T ss_dssp H
T ss_pred H
Confidence 3
No 382
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.85 E-value=0.0011 Score=62.87 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCC
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGI 185 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~ 185 (438)
-|+|.|+||+|||++|+.+|+.+.-
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHH
Confidence 3789999999999999999999743
No 383
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.84 E-value=0.00088 Score=59.87 Aligned_cols=31 Identities=32% Similarity=0.568 Sum_probs=25.5
Q ss_pred EEcCCCCcHHHHHHHHHHHhCCceEEEeccccc
Q 013704 164 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196 (438)
Q Consensus 164 L~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~ 196 (438)
|.||||+|||++|+.||++.|+ ..++.+++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~ll 31 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLL 31 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHH
Confidence 5799999999999999999976 456655544
No 384
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.84 E-value=0.0089 Score=62.90 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=30.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEecc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 193 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~ 193 (438)
.+|..++|+||+|+|||+++..+|..+ |..+..+++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D 137 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCAD 137 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCc
Confidence 457889999999999999999999875 6677777664
No 385
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.82 E-value=0.016 Score=60.49 Aligned_cols=68 Identities=16% Similarity=0.252 Sum_probs=43.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l 234 (438)
.++|+||.+||||++.+.+.+...-..++++..++..... .+.+.++.-... .....+.|||||+...
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~-----~l~d~~~~~~~~-~~~~~~yifLDEIq~v 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRI-----ELLDLLRAYIEL-KEREKSYIFLDEIQNV 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchh-----hHHHHHHHHHHh-hccCCceEEEecccCc
Confidence 8999999999999999888888755566666555443221 112222221111 1225689999999766
No 386
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.82 E-value=0.0033 Score=57.97 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.-.+|+||||+|||+++..++..+
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 468899999999999999888873
No 387
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.82 E-value=0.0095 Score=62.96 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=31.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE 194 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~ 194 (438)
..|..++|+|+||+|||++|..+|..+ |..+..+++..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 468899999999999999999998875 56666666643
No 388
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.81 E-value=0.00092 Score=63.54 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
..++||+||||||||++|+.+..-+
T Consensus 22 ~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 22 GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 3689999999999999999999864
No 389
>PLN02674 adenylate kinase
Probab=96.81 E-value=0.0013 Score=64.30 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=30.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~ 196 (438)
+.+..|+|.||||+|||++|+.+|+..|+. .++.+++.
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~--his~Gdll 66 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLC--HLATGDML 66 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCc--EEchhHHH
Confidence 335668999999999999999999999865 45555544
No 390
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.81 E-value=0.0077 Score=64.74 Aligned_cols=82 Identities=10% Similarity=0.010 Sum_probs=52.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH---h-CCceEEEeccccccC---------C-----------------CCC--
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAK---M-GINPIMMSAGELESG---------N-----------------AGE-- 202 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~---l-g~~~i~vs~~~l~s~---------~-----------------~Ge-- 202 (438)
|+.+...+||+|+||+|||+++..++.+ . |-++++++..+-... | ...
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~ 106 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSE 106 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCccccc
Confidence 5666788999999999999999877654 1 556666665321100 0 000
Q ss_pred ----hHHHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 013704 203 ----PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (438)
Q Consensus 203 ----~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~ 236 (438)
....+..++....+.++..++..|+||-+..+..
T Consensus 107 ~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~ 144 (509)
T PRK09302 107 QEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFS 144 (509)
T ss_pred ccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHh
Confidence 0112344555555566678899999999987653
No 391
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=96.81 E-value=0.0022 Score=65.31 Aligned_cols=98 Identities=16% Similarity=0.278 Sum_probs=64.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHH---hCCceEEEeccccccC---------CCCChHHHHHHHHHHHHHHHHhCCceeEEec
Q 013704 162 LGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG---------NAGEPAKLIRQRYREAADIIKKGKMCCLFIN 229 (438)
Q Consensus 162 lLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs~~~l~s~---------~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfID 229 (438)
+||.|..||||-++|++.-.. ...+|+-++|..+-.. -.|..+ -..+|+.| ...-+|+|
T Consensus 230 LLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~~g--k~GffE~A-------ngGTVlLD 300 (511)
T COG3283 230 LLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGDEG--KKGFFEQA-------NGGTVLLD 300 (511)
T ss_pred eEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCCCC--ccchhhhc-------cCCeEEee
Confidence 899999999999999987666 3678999999765421 122111 12455543 36778899
Q ss_pred cccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCcccc-----CCCCCceEEEecCCC
Q 013704 230 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ-----EENPRVPIIVTGNDF 288 (438)
Q Consensus 230 EiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~-----~~~~~v~VI~TTN~~ 288 (438)
||.-+.++ ++.-|+..+. ||.++. +-.-+|.|||||..+
T Consensus 301 eIgEmSp~-------------lQaKLLRFL~-------DGtFRRVGee~Ev~vdVRVIcatq~n 344 (511)
T COG3283 301 EIGEMSPR-------------LQAKLLRFLN-------DGTFRRVGEDHEVHVDVRVICATQVN 344 (511)
T ss_pred hhhhcCHH-------------HHHHHHHHhc-------CCceeecCCcceEEEEEEEEeccccc
Confidence 99877554 3345666555 344332 234579999999654
No 392
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=96.80 E-value=0.0016 Score=70.31 Aligned_cols=168 Identities=15% Similarity=0.234 Sum_probs=103.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC--CceEEEecccccc-----CCCCChHHHHHHHHHHHH-HHHHhCCceeEEeccc
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELES-----GNAGEPAKLIRQRYREAA-DIIKKGKMCCLFINDL 231 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg--~~~i~vs~~~l~s-----~~~Ge~~~~ir~~f~~A~-~~~~~~~p~ILfIDEi 231 (438)
..+|+.|.|||||-.++++|-+..+ -+|+-|+|..+.. .++|-.+..-...+.+-. ...+......||+|||
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeI 416 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEI 416 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHHh
Confidence 3599999999999999999988754 4788898865432 222211111011111110 0111344568999999
Q ss_pred cccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe-----
Q 013704 232 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW----- 306 (438)
Q Consensus 232 D~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~----- 306 (438)
..+.- .++..|+..+.+-+.+-++|. ...=.|-||+||++.- ..|.+.|||..-+|
T Consensus 417 gd~p~-------------~~Qs~LLrVl~e~~v~p~g~~---~~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~ 477 (606)
T COG3284 417 GDMPL-------------ALQSRLLRVLQEGVVTPLGGT---RIKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNA 477 (606)
T ss_pred hhchH-------------HHHHHHHHHHhhCceeccCCc---ceeEEEEEEeccCcCH---HHHHHcCCchHHHHHHhcC
Confidence 76632 344667887876777777776 3445788999998742 34778888866333
Q ss_pred ----cCCHHHH---HHHHHhhhCC-----CCCCHHHHHHH-HccCCcchhHHH
Q 013704 307 ----APTREDR---IGVCSGIFRT-----DNVPKEDIVKL-VDTFPGQSIDFF 346 (438)
Q Consensus 307 ----lP~~e~R---~~Il~~~l~~-----~~v~~~~la~l-~~~~sgadi~~~ 346 (438)
+|...+| ...+..++.. ..++.+.++.+ .-.+||-.-++.
T Consensus 478 ~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~ 530 (606)
T COG3284 478 FVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELD 530 (606)
T ss_pred eeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHH
Confidence 4765554 5556555543 34556666554 457888665544
No 393
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.80 E-value=0.0063 Score=55.33 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
+.+...+.|.||.|+|||+|.+.|+...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4455689999999999999999999774
No 394
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.80 E-value=0.0068 Score=54.37 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
.+...++|.||.|+|||++.++|+..+.
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3446799999999999999999998753
No 395
>PRK04182 cytidylate kinase; Provisional
Probab=96.80 E-value=0.0013 Score=59.77 Aligned_cols=29 Identities=31% Similarity=0.534 Sum_probs=26.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~ 189 (438)
.|+|.|+||+|||++++.+|+.+|++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 48899999999999999999999988764
No 396
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.80 E-value=0.0041 Score=57.78 Aligned_cols=69 Identities=19% Similarity=0.216 Sum_probs=41.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCC--ceEEEecc-ccccCC-------------CCChHHHHHHHHHHHHHHHHhCC
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAG-ELESGN-------------AGEPAKLIRQRYREAADIIKKGK 222 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~--~~i~vs~~-~l~s~~-------------~Ge~~~~ir~~f~~A~~~~~~~~ 222 (438)
...++|.||+|+|||++.++++..... ..+.+... ++.... .+.......+..+.+. +..
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l----R~~ 100 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSAL----RMR 100 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHh----ccC
Confidence 467999999999999999999987532 12222111 111000 0111122334444444 788
Q ss_pred ceeEEeccc
Q 013704 223 MCCLFINDL 231 (438)
Q Consensus 223 p~ILfIDEi 231 (438)
|.+++++|+
T Consensus 101 pd~i~igEi 109 (186)
T cd01130 101 PDRIIVGEV 109 (186)
T ss_pred CCEEEEEcc
Confidence 999999998
No 397
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.79 E-value=0.0011 Score=56.34 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 013704 162 LGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 162 lLL~GPPGtGKT~lA~aIA~~l 183 (438)
|+|.|+||+|||++|+.+++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998
No 398
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.79 E-value=0.0091 Score=56.09 Aligned_cols=23 Identities=26% Similarity=0.031 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFA 181 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~ 181 (438)
...++|.||.|+|||++.+.|+.
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHH
Confidence 36799999999999999999993
No 399
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.77 E-value=0.0011 Score=62.07 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=17.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~l 183 (438)
..+++||||||||+++..++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 58999999999998766666665
No 400
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.75 E-value=0.0028 Score=59.23 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.|+.++|.||+|+|||+|++.+.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 57889999999999999999999875
No 401
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.74 E-value=0.0077 Score=55.56 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=32.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE 196 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~ 196 (438)
.++..++|.|+||+|||++++.++..+ +...+.+++..+.
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 557789999999999999999999986 4455667665543
No 402
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.73 E-value=0.0018 Score=59.31 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
..|..|+|.|+||+|||++|+++++.+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999999975
No 403
>PLN02459 probable adenylate kinase
Probab=96.73 E-value=0.002 Score=63.44 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=29.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~ 196 (438)
..|..++|.||||+|||++|+.+|+..++. .++.+++.
T Consensus 27 ~~~~~ii~~G~PGsGK~T~a~~la~~~~~~--~is~gdll 64 (261)
T PLN02459 27 GRNVNWVFLGCPGVGKGTYASRLSKLLGVP--HIATGDLV 64 (261)
T ss_pred cCccEEEEECCCCCCHHHHHHHHHHHhCCc--EEeCcHHH
Confidence 344568888999999999999999999865 45555443
No 404
>PRK10867 signal recognition particle protein; Provisional
Probab=96.73 E-value=0.013 Score=61.87 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=29.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh----CCceEEEecc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAG 193 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l----g~~~i~vs~~ 193 (438)
.+|..++++||+|+|||+++..+|..+ |..+..+++.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 458899999999999999888777753 6667777764
No 405
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.72 E-value=0.0055 Score=57.65 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=25.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEecc
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 193 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~ 193 (438)
+..+|.||||||||++.+.+.+.+ |..++.+...
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 568899999999999999887664 5666666654
No 406
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.71 E-value=0.0038 Score=55.45 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=26.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~ 186 (438)
++...++|.|+.|+|||++++.+++.+|..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 344679999999999999999999999875
No 407
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.71 E-value=0.0036 Score=64.77 Aligned_cols=68 Identities=13% Similarity=0.203 Sum_probs=41.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC-----CceEEEecc-ccc-----------cCCCCChHHHHHHHHHHHHHHHHhCCc
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAG-ELE-----------SGNAGEPAKLIRQRYREAADIIKKGKM 223 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg-----~~~i~vs~~-~l~-----------s~~~Ge~~~~ir~~f~~A~~~~~~~~p 223 (438)
.+|+.||+|+|||++.+++..+.. ..++.+.-+ ++. ...+|.... -|..+...+-+..|
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~----~~~~~l~~aLR~~P 226 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVD----SFANGIRLALRRAP 226 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCcc----CHHHHHHHhhccCC
Confidence 578999999999999999988863 234444322 211 011121111 23333333337899
Q ss_pred eeEEecccc
Q 013704 224 CCLFINDLD 232 (438)
Q Consensus 224 ~ILfIDEiD 232 (438)
.+|++.|+.
T Consensus 227 D~I~vGEiR 235 (372)
T TIGR02525 227 KIIGVGEIR 235 (372)
T ss_pred CEEeeCCCC
Confidence 999999983
No 408
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.71 E-value=0.0078 Score=59.67 Aligned_cols=38 Identities=18% Similarity=0.284 Sum_probs=29.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEecc
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 193 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~ 193 (438)
...|..++|.||||+|||+++..+|..+ |..+..+++.
T Consensus 69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 69 ENKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3457889999999999999999988775 5556656554
No 409
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.011 Score=61.39 Aligned_cols=101 Identities=19% Similarity=0.079 Sum_probs=66.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhC--CceEEEeccccccCC------C--------CChHHHHHHHHHHHHHHHH
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGN------A--------GEPAKLIRQRYREAADIIK 219 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg--~~~i~vs~~~l~s~~------~--------Ge~~~~ir~~f~~A~~~~~ 219 (438)
+-+-.-+|+-|.||.|||+|.-.++..+. .+++++++.+-...+ . --.+.++..+++...
T Consensus 90 ~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~---- 165 (456)
T COG1066 90 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELE---- 165 (456)
T ss_pred cccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHH----
Confidence 33446688889999999999888888753 268999875422110 0 112334444555444
Q ss_pred hCCceeEEeccccccccCCCCCccccch-hHHHHHHHHHhhc
Q 013704 220 KGKMCCLFINDLDAGAGRMGGTTQYTVN-NQMVNATLMNIAD 260 (438)
Q Consensus 220 ~~~p~ILfIDEiD~l~~~r~~~~~~~~~-~~~v~~~Ll~Lld 260 (438)
..+|.+++||-|..+....-.....++. -|.....|+++.+
T Consensus 166 ~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK 207 (456)
T COG1066 166 QEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAK 207 (456)
T ss_pred hcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHH
Confidence 8999999999999997664322333333 4677778888666
No 410
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.70 E-value=0.0028 Score=63.64 Aligned_cols=70 Identities=13% Similarity=0.230 Sum_probs=43.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC-----CceEEEec-cccc-------cCCCCChHHHHHHHHHHHHHHHHhCCcee
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSA-GELE-------SGNAGEPAKLIRQRYREAADIIKKGKMCC 225 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg-----~~~i~vs~-~~l~-------s~~~Ge~~~~ir~~f~~A~~~~~~~~p~I 225 (438)
..++++.||+|+|||+++++++.... ..++.+.- .++. .-..++....+.++++.+. +..|..
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aL----R~~pD~ 207 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATL----RLRPDR 207 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHh----cCCCCE
Confidence 46799999999999999999998862 22332221 1111 0001111113445555555 899999
Q ss_pred EEecccc
Q 013704 226 LFINDLD 232 (438)
Q Consensus 226 LfIDEiD 232 (438)
|++.|+-
T Consensus 208 iivGEiR 214 (299)
T TIGR02782 208 IIVGEVR 214 (299)
T ss_pred EEEeccC
Confidence 9999984
No 411
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.68 E-value=0.0028 Score=49.43 Aligned_cols=31 Identities=26% Similarity=0.505 Sum_probs=24.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh-CCceEEEec
Q 013704 162 LGIWGGKGQGKSFQCELVFAKM-GINPIMMSA 192 (438)
Q Consensus 162 lLL~GPPGtGKT~lA~aIA~~l-g~~~i~vs~ 192 (438)
+.+.|+||+|||++++++++.+ +.++..++.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE 33 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE
Confidence 6789999999999999999996 344444443
No 412
>PRK14526 adenylate kinase; Provisional
Probab=96.68 E-value=0.0017 Score=62.06 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=27.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccc
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~ 196 (438)
.++|.||||+|||++|+.+|+.++... ++.+++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~--is~G~ll 35 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYH--ISTGDLF 35 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCce--eecChHH
Confidence 378999999999999999999988654 5555543
No 413
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.67 E-value=0.0052 Score=71.73 Aligned_cols=172 Identities=11% Similarity=0.130 Sum_probs=99.5
Q ss_pred CCcEEEEEcCCCCcHHHH-HHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHH-------h----CCcee
Q 013704 158 VPLILGIWGGKGQGKSFQ-CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-------K----GKMCC 225 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~l-A~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~-------~----~~p~I 225 (438)
.-++++++||||+|||++ +-++-.++-..++.++.+.-. .++..++ ..++-..... . -+.-|
T Consensus 1493 t~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t-----~T~s~ls-~Ler~t~yy~~tg~~~l~PK~~vK~lV 1566 (3164)
T COG5245 1493 TLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT-----MTPSKLS-VLERETEYYPNTGVVRLYPKPVVKDLV 1566 (3164)
T ss_pred ccceEEEECCCCCccchhcchhhhhhhheeeeEEeecccc-----CCHHHHH-HHHhhceeeccCCeEEEccCcchhheE
Confidence 357999999999999995 778888888888877765332 1122222 2222110000 0 12238
Q ss_pred EEeccccccccC-CCCCccccchhHHHHHHHHHhhcCCCccccCCcccc-----CCCCCceEEEecCCCCCC-----Ccc
Q 013704 226 LFINDLDAGAGR-MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ-----EENPRVPIIVTGNDFSTL-----YAP 294 (438)
Q Consensus 226 LfIDEiD~l~~~-r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~-----~~~~~v~VI~TTN~~~~L-----d~a 294 (438)
||-|||. +++ +.-..+ .|.-+|..++. -.|+|.. ....++.+.+++|.+... +..
T Consensus 1567 LFcDeIn--Lp~~~~y~~~------~vI~FlR~l~e------~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eR 1632 (3164)
T COG5245 1567 LFCDEIN--LPYGFEYYPP------TVIVFLRPLVE------RQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYER 1632 (3164)
T ss_pred EEeeccC--CccccccCCC------ceEEeeHHHHH------hcccccchhhhHhhhcceEEEccCCCCCCcccCccHHH
Confidence 9999999 443 211111 12222323222 3456654 234678888999977643 233
Q ss_pred ccCCCcceEEEe--cCCHHHHHHHHHhhhCCCCCCHHHHHHHHccCCcchhHHHHHHHHh
Q 013704 295 LIRDGRMEKFYW--APTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRAR 352 (438)
Q Consensus 295 LlR~GRfd~~i~--lP~~e~R~~Il~~~l~~~~v~~~~la~l~~~~sgadi~~~~al~~~ 352 (438)
++| | ..+++ .|.......|...++...-+-.++...+++.+.-+..+++..++++
T Consensus 1633 f~r--~-~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~ 1689 (3164)
T COG5245 1633 FIR--K-PVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDK 1689 (3164)
T ss_pred Hhc--C-ceEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444 2 23344 4999888999888877655555566666666666666666444443
No 414
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.67 E-value=0.021 Score=57.04 Aligned_cols=35 Identities=23% Similarity=0.496 Sum_probs=28.8
Q ss_pred cCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc
Q 013704 152 NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (438)
Q Consensus 152 ~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~ 186 (438)
..+....|..|.|+|+=|+|||++.+.+-+++.-.
T Consensus 13 ~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 13 KNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 33344778999999999999999999999886544
No 415
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.67 E-value=0.0018 Score=58.34 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=26.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~ 189 (438)
.|.|.|+||+|||++|+.+++.+|.+++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 48899999999999999999999988654
No 416
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.67 E-value=0.037 Score=56.99 Aligned_cols=93 Identities=16% Similarity=0.298 Sum_probs=60.4
Q ss_pred HHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccc---------------cCCCCChHH--
Q 013704 143 VVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE---------------SGNAGEPAK-- 205 (438)
Q Consensus 143 ~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~---------------s~~~Ge~~~-- 205 (438)
.+...+.++.......|.++.|||-.|||||++.+.+.++++.+.+.+++-+.. ....|..-+
T Consensus 14 qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~ 93 (438)
T KOG2543|consen 14 QIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGD 93 (438)
T ss_pred HHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhH
Confidence 344445566554557899999999999999999999999999998888873322 112222111
Q ss_pred --HHH---HHHHHHHHHHHhCCceeEEeccccccc
Q 013704 206 --LIR---QRYREAADIIKKGKMCCLFINDLDAGA 235 (438)
Q Consensus 206 --~ir---~~f~~A~~~~~~~~p~ILfIDEiD~l~ 235 (438)
++. ..|..-.++-+..+.-.|++|.+|.+.
T Consensus 94 ~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr 128 (438)
T KOG2543|consen 94 AENFSDFIYLLVQWPAATNRDQKVFLILDNADALR 128 (438)
T ss_pred HHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh
Confidence 111 122221112224467899999999985
No 417
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.66 E-value=0.032 Score=63.52 Aligned_cols=34 Identities=18% Similarity=-0.068 Sum_probs=27.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEec
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~ 192 (438)
..+-++++||+|.|||+++...+...+ ++..++.
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l 64 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSL 64 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEec
Confidence 345699999999999999999887776 6555554
No 418
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.66 E-value=0.012 Score=56.23 Aligned_cols=22 Identities=36% Similarity=0.152 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 013704 160 LILGIWGGKGQGKSFQCELVFA 181 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~ 181 (438)
..++|.||.|+|||++.+.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6789999999999999999974
No 419
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.64 E-value=0.0016 Score=58.87 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceE
Q 013704 162 LGIWGGKGQGKSFQCELVFAKMGINPI 188 (438)
Q Consensus 162 lLL~GPPGtGKT~lA~aIA~~lg~~~i 188 (438)
|.|.|+||||||+|++.+++. |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999999 87766
No 420
>PRK13764 ATPase; Provisional
Probab=96.64 E-value=0.0028 Score=69.31 Aligned_cols=26 Identities=23% Similarity=0.123 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
..++|++||||+|||+++++++..+.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 57899999999999999999998864
No 421
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.64 E-value=0.0021 Score=60.71 Aligned_cols=30 Identities=23% Similarity=0.111 Sum_probs=26.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCce
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGINP 187 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~~~ 187 (438)
.|..+++.|+||+|||++|+.+|..+++..
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 356899999999999999999999998754
No 422
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.63 E-value=0.015 Score=56.01 Aligned_cols=21 Identities=19% Similarity=0.097 Sum_probs=18.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 013704 162 LGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 162 lLL~GPPGtGKT~lA~aIA~~ 182 (438)
-+|+||||+|||+|+..+|..
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 578999999999999999875
No 423
>PTZ00035 Rad51 protein; Provisional
Probab=96.62 E-value=0.018 Score=58.95 Aligned_cols=82 Identities=13% Similarity=0.123 Sum_probs=49.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCceEEEecccccc---------CC---------------CC
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELES---------GN---------------AG 201 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l---------g~~~i~vs~~~l~s---------~~---------------~G 201 (438)
|+.....+.|+||||||||.++..+|... +-..++++...... .+ .-
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 56666788899999999999999988543 23455666533211 00 00
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceeEEeccccccccC
Q 013704 202 EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 237 (438)
Q Consensus 202 e~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~ 237 (438)
..+..+ .+...+...+....+.+|+||-+-+++..
T Consensus 194 ~~e~~~-~~l~~~~~~l~~~~~~lvVIDSital~r~ 228 (337)
T PTZ00035 194 NHEHQM-QLLSQAAAKMAEERFALLIVDSATALFRV 228 (337)
T ss_pred CHHHHH-HHHHHHHHHhhccCccEEEEECcHHhhhh
Confidence 011111 12222222333578899999999887643
No 424
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.62 E-value=0.019 Score=54.54 Aligned_cols=25 Identities=20% Similarity=-0.017 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
....++|.||.|+|||++.+.++..
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999999743
No 425
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.61 E-value=0.0081 Score=56.30 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=31.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEecccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 195 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l 195 (438)
..|..+.|.|++|+|||+++++++..+ |...+.++...+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~ 63 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNV 63 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH
Confidence 467889999999999999999999986 455667766544
No 426
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.61 E-value=0.0054 Score=59.72 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
...--+-|.||+|||||+|.+.||.-
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34456889999999999999999986
No 427
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.60 E-value=0.0082 Score=55.74 Aligned_cols=77 Identities=18% Similarity=0.100 Sum_probs=42.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc--eEEEecccc--ccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccc
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN--PIMMSAGEL--ESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDL 231 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~--~i~vs~~~l--~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEi 231 (438)
+++...+.|.||.|+|||+|.+.|+...... -+.+....+ ......- ..-.++...-|+.+ ...|.++++||-
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~L-SgGq~qrv~laral--~~~p~lllLDEP 98 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDL-SGGELQRVAIAAAL--LRNATFYLFDEP 98 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCC-CHHHHHHHHHHHHH--hcCCCEEEEECC
Confidence 3445678899999999999999999864211 122221111 0011100 11112333333211 578999999997
Q ss_pred cccc
Q 013704 232 DAGA 235 (438)
Q Consensus 232 D~l~ 235 (438)
-+.+
T Consensus 99 ts~L 102 (177)
T cd03222 99 SAYL 102 (177)
T ss_pred cccC
Confidence 5443
No 428
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.60 E-value=0.0033 Score=59.21 Aligned_cols=38 Identities=29% Similarity=0.623 Sum_probs=30.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC-CceEEEeccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMG-INPIMMSAGE 194 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg-~~~i~vs~~~ 194 (438)
..|..|.|.||+|+|||+|+++|++.++ ..+..++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~ 42 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDS 42 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCc
Confidence 4578899999999999999999999984 3444455543
No 429
>PF13479 AAA_24: AAA domain
Probab=96.59 E-value=0.0043 Score=59.06 Aligned_cols=71 Identities=15% Similarity=0.112 Sum_probs=39.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCce-EEEeccccc-cCC-CC-----ChHHHHHHHHHHHHHHHHhCCceeEEec
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGINP-IMMSAGELE-SGN-AG-----EPAKLIRQRYREAADIIKKGKMCCLFIN 229 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~~~-i~vs~~~l~-s~~-~G-----e~~~~ir~~f~~A~~~~~~~~p~ILfID 229 (438)
.|..++||||||+|||++|..+ +-++ +.+..+... ..+ .+ .+-..+.+.+.... .....-..|+||
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~--~~~~~y~tiVID 75 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELE--EDEADYDTIVID 75 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHH--hccCCCCEEEEE
Confidence 4678999999999999999888 3332 223333110 011 00 12223333333221 014566799999
Q ss_pred ccccc
Q 013704 230 DLDAG 234 (438)
Q Consensus 230 EiD~l 234 (438)
-++.+
T Consensus 76 sis~~ 80 (213)
T PF13479_consen 76 SISWL 80 (213)
T ss_pred CHHHH
Confidence 88765
No 430
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.59 E-value=0.0043 Score=63.29 Aligned_cols=71 Identities=14% Similarity=0.153 Sum_probs=45.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCC--ceEEEe-cccccc-----------CC--CCChHHHHHHHHHHHHHHHHhC
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMS-AGELES-----------GN--AGEPAKLIRQRYREAADIIKKG 221 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~--~~i~vs-~~~l~s-----------~~--~Ge~~~~ir~~f~~A~~~~~~~ 221 (438)
...++++.||+|+|||++.+++.....- .++.+. ..++.- .. .|...-...++.+.+. +.
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~L----R~ 234 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACL----RL 234 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHh----cc
Confidence 3467999999999999999999998643 222221 112210 00 1111223445566555 89
Q ss_pred CceeEEecccc
Q 013704 222 KMCCLFINDLD 232 (438)
Q Consensus 222 ~p~ILfIDEiD 232 (438)
.|..|++.|+-
T Consensus 235 ~PD~IivGEiR 245 (332)
T PRK13900 235 RPDRIIVGELR 245 (332)
T ss_pred CCCeEEEEecC
Confidence 99999999984
No 431
>PRK13975 thymidylate kinase; Provisional
Probab=96.58 E-value=0.0038 Score=57.84 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=24.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCce
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINP 187 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~ 187 (438)
..|.|.|++|+|||++++.+++.++..+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~~ 30 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAFW 30 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 4688999999999999999999998643
No 432
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.57 E-value=0.0037 Score=61.30 Aligned_cols=71 Identities=13% Similarity=0.109 Sum_probs=42.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCc---eEEEe-ccccccCCC-------CChHHHHHHHHHHHHHHHHhCCceeE
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMS-AGELESGNA-------GEPAKLIRQRYREAADIIKKGKMCCL 226 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~~---~i~vs-~~~l~s~~~-------Ge~~~~ir~~f~~A~~~~~~~~p~IL 226 (438)
....+++.||+|+|||++.+++..++.-. ++.+. ..++.-... ........++++.+. +..|++|
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~L----R~~pD~i 201 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSAL----RQDPDVI 201 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHT----TS--SEE
T ss_pred cceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHh----cCCCCcc
Confidence 34689999999999999999999986443 33332 122211100 011223344555444 7889999
Q ss_pred Eecccc
Q 013704 227 FINDLD 232 (438)
Q Consensus 227 fIDEiD 232 (438)
+|+|+.
T Consensus 202 iigEiR 207 (270)
T PF00437_consen 202 IIGEIR 207 (270)
T ss_dssp EESCE-
T ss_pred cccccC
Confidence 999994
No 433
>PRK12338 hypothetical protein; Provisional
Probab=96.56 E-value=0.0025 Score=64.54 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCceE
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPI 188 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i 188 (438)
.|..|++.|+||+|||++|+++|..+|+..+
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 5789999999999999999999999998653
No 434
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.56 E-value=0.016 Score=54.31 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 013704 160 LILGIWGGKGQGKSFQCELVFA 181 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~ 181 (438)
+.++|.||.|+|||++.+.|+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4699999999999999999983
No 435
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=96.54 E-value=0.0013 Score=70.79 Aligned_cols=129 Identities=14% Similarity=0.219 Sum_probs=70.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEEEecc---------c----cccCCCCChHHHHHHHHHHHHHHHHhCCceeE
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG---------E----LESGNAGEPAKLIRQRYREAADIIKKGKMCCL 226 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~---------~----l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL 226 (438)
-++||+|.||||||-+.+.+++-....++..-.+ . +...|.-|.+.+ + -....|-
T Consensus 483 invLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWTLEaGAL-----------V-LADkGvC 550 (854)
T KOG0477|consen 483 INVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWTLEAGAL-----------V-LADKGVC 550 (854)
T ss_pred eeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCccceeeeccCeE-----------E-EccCceE
Confidence 5799999999999999999998855444332111 0 111222221111 1 2335577
Q ss_pred EeccccccccCCCCCcccc-chhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC-------------CCC
Q 013704 227 FINDLDAGAGRMGGTTQYT-VNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-------------TLY 292 (438)
Q Consensus 227 fIDEiD~l~~~r~~~~~~~-~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~-------------~Ld 292 (438)
+|||+|++-...-. +-++ +..|-+. ++--|. -..-..++.||+|+|... .|-
T Consensus 551 lIDEFDKMndqDRt-SIHEAMEQQSIS------------ISKAGI-VtsLqArctvIAAanPigGRY~~s~tFaqNV~lt 616 (854)
T KOG0477|consen 551 LIDEFDKMNDQDRT-SIHEAMEQQSIS------------ISKAGI-VTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLT 616 (854)
T ss_pred Eeehhhhhcccccc-hHHHHHHhcchh------------hhhhhH-HHHHHhhhhhheecCCCCCccCCccchhhccccc
Confidence 79999999543110 1100 0000000 000000 001236778999998621 577
Q ss_pred ccccCCCcceEEEec-----CCHHHHHHH
Q 013704 293 APLIRDGRMEKFYWA-----PTREDRIGV 316 (438)
Q Consensus 293 ~aLlR~GRfd~~i~l-----P~~e~R~~I 316 (438)
.++++ |||..--+ |-.+++++-
T Consensus 617 ePIlS--RFDiLcVvkD~vd~~~De~lA~ 643 (854)
T KOG0477|consen 617 EPILS--RFDILCVVKDTVDPVQDEKLAK 643 (854)
T ss_pred cchhh--hcceeeeeecccCchhHHHHHH
Confidence 88999 99985552 777776543
No 436
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.54 E-value=0.0066 Score=59.64 Aligned_cols=83 Identities=14% Similarity=0.203 Sum_probs=48.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC---------CceEEEecccccc---------CCCCChHHH----------
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGELES---------GNAGEPAKL---------- 206 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~lg---------~~~i~vs~~~l~s---------~~~Ge~~~~---------- 206 (438)
|+......=|+||||+|||-+|-.+|-... ..+++++...-.+ .+.-+.++.
T Consensus 34 Gi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~ 113 (256)
T PF08423_consen 34 GIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVF 113 (256)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-S
T ss_pred CCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecC
Confidence 455445666999999999999998887643 3477777543111 111111111
Q ss_pred ----HHHHHHHHHHHHHhCCceeEEeccccccccC
Q 013704 207 ----IRQRYREAADIIKKGKMCCLFINDLDAGAGR 237 (438)
Q Consensus 207 ----ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~ 237 (438)
+..+.......+...+-.+|+||-|-+++..
T Consensus 114 ~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~ 148 (256)
T PF08423_consen 114 DLEELLELLEQLPKLLSESKIKLIVIDSIAALFRS 148 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHH
T ss_pred CHHHHHHHHHHHHhhccccceEEEEecchHHHHHH
Confidence 1122222222333567889999999988753
No 437
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.54 E-value=0.013 Score=60.05 Aligned_cols=83 Identities=12% Similarity=0.126 Sum_probs=49.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCceEEEecccccc---------CCCCCh-------------
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELES---------GNAGEP------------- 203 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l---------g~~~i~vs~~~l~s---------~~~Ge~------------- 203 (438)
|+..-..++++|+||+|||.+|..+|... +-.+++++...-.+ .+--..
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~ 198 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAY 198 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecC
Confidence 45556788899999999999999887542 12567777644110 000000
Q ss_pred -HHHHHHHHHHHHHHHHhCCceeEEeccccccccC
Q 013704 204 -AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 237 (438)
Q Consensus 204 -~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~ 237 (438)
...+..++......+....+.+|+||-+-+++..
T Consensus 199 ~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~ 233 (342)
T PLN03186 199 NTDHQSELLLEAASMMAETRFALMIVDSATALYRT 233 (342)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHH
Confidence 0111122223323344678999999999888653
No 438
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.53 E-value=0.00088 Score=63.61 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 013704 162 LGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 162 lLL~GPPGtGKT~lA~aIA~~l 183 (438)
++++|+||+|||++.+.++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999985
No 439
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.50 E-value=0.014 Score=53.00 Aligned_cols=24 Identities=25% Similarity=0.149 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
|...++.||.|+|||.+.++++-.
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~ 44 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLA 44 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998655
No 440
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.49 E-value=0.004 Score=56.95 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=28.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEecc
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 193 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~ 193 (438)
.+..+.|.|+||+|||++|+.++..+ +..+..++..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 45688999999999999999999987 4445556554
No 441
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.47 E-value=0.005 Score=62.02 Aligned_cols=72 Identities=14% Similarity=0.134 Sum_probs=44.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC--ceEEEe-ccccccC----------C--CCChHHHHHHHHHHHHHHHHhC
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMS-AGELESG----------N--AGEPAKLIRQRYREAADIIKKG 221 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~--~~i~vs-~~~l~s~----------~--~Ge~~~~ir~~f~~A~~~~~~~ 221 (438)
+....+++.||+|+|||+++++++..+.. ..+.+. ..++.-. . .+...-...+++..+. +.
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~L----r~ 217 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCL----RM 217 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHh----cC
Confidence 34578999999999999999999988532 122221 1111100 0 0111122344555554 88
Q ss_pred CceeEEecccc
Q 013704 222 KMCCLFINDLD 232 (438)
Q Consensus 222 ~p~ILfIDEiD 232 (438)
.|.+|++||+-
T Consensus 218 ~pd~ii~gE~r 228 (308)
T TIGR02788 218 RPDRIILGELR 228 (308)
T ss_pred CCCeEEEeccC
Confidence 99999999985
No 442
>PRK14529 adenylate kinase; Provisional
Probab=96.47 E-value=0.0024 Score=61.59 Aligned_cols=35 Identities=29% Similarity=0.399 Sum_probs=28.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEEecccccc
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 197 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s 197 (438)
.|+|.||||+|||++|+.|++.++++. ++.+++..
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~--is~gdllr 36 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAH--IESGAIFR 36 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC--cccchhhh
Confidence 378899999999999999999999765 45455543
No 443
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.47 E-value=0.0046 Score=62.83 Aligned_cols=70 Identities=14% Similarity=0.222 Sum_probs=43.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC-----CceEEEe-ccccccC------CCCChHHHHHHHHHHHHHHHHhCCceeE
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMS-AGELESG------NAGEPAKLIRQRYREAADIIKKGKMCCL 226 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg-----~~~i~vs-~~~l~s~------~~Ge~~~~ir~~f~~A~~~~~~~~p~IL 226 (438)
..++|+.|++|+|||++.++++.... ..++.+. ..++.-. +.....-....+.+.+. +..|..|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aL----R~~PD~I 219 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTM----RLRPDRI 219 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHh----CCCCCEE
Confidence 45799999999999999999998862 2233322 1222210 00111112344555554 8999999
Q ss_pred Eecccc
Q 013704 227 FINDLD 232 (438)
Q Consensus 227 fIDEiD 232 (438)
++.|+-
T Consensus 220 ivGEiR 225 (323)
T PRK13833 220 IVGEVR 225 (323)
T ss_pred EEeecC
Confidence 999983
No 444
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.45 E-value=0.0059 Score=62.05 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=29.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEEEecc
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 193 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~ 193 (438)
..+.|.|+||+|||+|++.++...+.+++.-.+.
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R 196 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAR 196 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhH
Confidence 5789999999999999999999999987655444
No 445
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.43 E-value=0.008 Score=53.57 Aligned_cols=75 Identities=13% Similarity=0.138 Sum_probs=42.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc--eEEEeccccccCCCC-C-hHHHHHHHHHHHHHHHHhCCceeEEeccc
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN--PIMMSAGELESGNAG-E-PAKLIRQRYREAADIIKKGKMCCLFINDL 231 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~--~i~vs~~~l~s~~~G-e-~~~~ir~~f~~A~~~~~~~~p~ILfIDEi 231 (438)
..+...+.|.||.|+|||+|.++++...... -+.++... .-.|+- - ....-|-.+.+|. ...|.++++||-
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~-~i~~~~~lS~G~~~rv~laral----~~~p~illlDEP 97 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTV-KIGYFEQLSGGEKMRLALAKLL----LENPNLLLLDEP 97 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeE-EEEEEccCCHHHHHHHHHHHHH----hcCCCEEEEeCC
Confidence 3445678999999999999999999874311 01111100 000100 1 1111112233333 678999999997
Q ss_pred cccc
Q 013704 232 DAGA 235 (438)
Q Consensus 232 D~l~ 235 (438)
.+-+
T Consensus 98 ~~~L 101 (144)
T cd03221 98 TNHL 101 (144)
T ss_pred ccCC
Confidence 6544
No 446
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.42 E-value=0.01 Score=59.11 Aligned_cols=38 Identities=16% Similarity=0.285 Sum_probs=30.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh----C-CceEEEeccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM----G-INPIMMSAGE 194 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l----g-~~~i~vs~~~ 194 (438)
..+..++|.||+|+|||+++..+|..+ | ..+..++...
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 356789999999999999999998874 4 5666666553
No 447
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.41 E-value=0.014 Score=59.11 Aligned_cols=83 Identities=16% Similarity=0.200 Sum_probs=49.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh------C---CceEEEeccccccC---------CCCChHH-----------
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM------G---INPIMMSAGELESG---------NAGEPAK----------- 205 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l------g---~~~i~vs~~~l~s~---------~~Ge~~~----------- 205 (438)
|+.+-..+.++||||+|||.+|..+|... | -..++++..+..+. +--....
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~ 171 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAY 171 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecC
Confidence 56666888999999999999999988632 1 24567766442110 0000000
Q ss_pred ---HHHHHHHHHHHHHHhCCceeEEeccccccccC
Q 013704 206 ---LIRQRYREAADIIKKGKMCCLFINDLDAGAGR 237 (438)
Q Consensus 206 ---~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~ 237 (438)
.+..+.......+....+.+|+||-+-+++..
T Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r~ 206 (316)
T TIGR02239 172 NTDHQLQLLQQAAAMMSESRFALLIVDSATALYRT 206 (316)
T ss_pred ChHHHHHHHHHHHHhhccCCccEEEEECcHHHhhh
Confidence 01112222222333567899999999888643
No 448
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.40 E-value=0.028 Score=59.27 Aligned_cols=37 Identities=22% Similarity=0.431 Sum_probs=29.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh----CCceEEEecc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAG 193 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l----g~~~i~vs~~ 193 (438)
.+|..+++.||||+|||++|..+|..+ |..+..+++.
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D 137 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD 137 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 458899999999999999988888763 5667777665
No 449
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.40 E-value=0.026 Score=54.30 Aligned_cols=24 Identities=25% Similarity=-0.069 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFA 181 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~ 181 (438)
....++|.||.|+|||++.+.++.
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999988
No 450
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.39 E-value=0.015 Score=53.37 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
+.+...+.|.||.|+|||+|+++++...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4455679999999999999999999874
No 451
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.37 E-value=0.0057 Score=62.05 Aligned_cols=70 Identities=11% Similarity=0.198 Sum_probs=44.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC-----CceEEEe-cccccc------CCCCChHHHHHHHHHHHHHHHHhCCceeE
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMS-AGELES------GNAGEPAKLIRQRYREAADIIKKGKMCCL 226 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg-----~~~i~vs-~~~l~s------~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL 226 (438)
...+++.||+|+|||+++++++.+.- ..++.+. ..++.- .+....+..+.++++.+. +..|..|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aL----R~~PD~I 223 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTL----RMRPDRI 223 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHh----cCCCCEE
Confidence 46799999999999999999998741 1222221 122210 010111123455666665 8999999
Q ss_pred Eecccc
Q 013704 227 FINDLD 232 (438)
Q Consensus 227 fIDEiD 232 (438)
++.|+-
T Consensus 224 ivGEiR 229 (319)
T PRK13894 224 LVGEVR 229 (319)
T ss_pred EEeccC
Confidence 999983
No 452
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.35 E-value=0.005 Score=58.85 Aligned_cols=38 Identities=21% Similarity=0.166 Sum_probs=28.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccC
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 198 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~ 198 (438)
.++|+||+|||||.+|-++|++.|.++|..+.-.....
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~ 40 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPE 40 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccc
Confidence 47899999999999999999999999999887555443
No 453
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.35 E-value=0.017 Score=61.87 Aligned_cols=38 Identities=11% Similarity=0.130 Sum_probs=30.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH----hCCceEEEec
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAK----MGINPIMMSA 192 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~----lg~~~i~vs~ 192 (438)
|+.+...+|+.||||||||++|..++.+ .|-+.++++.
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~ 58 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTF 58 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 5677789999999999999999987543 2567777764
No 454
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.34 E-value=0.0037 Score=69.75 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 013704 160 LILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
.-+.+.|+.|||||+|+|.+..-
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 44999999999999999999886
No 455
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.32 E-value=0.0041 Score=64.06 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI 185 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~ 185 (438)
..|..+.+.||.|||||++.++|...+..
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 45788999999999999999999988643
No 456
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.32 E-value=0.0047 Score=62.01 Aligned_cols=33 Identities=30% Similarity=0.427 Sum_probs=29.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCce
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINP 187 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~ 187 (438)
+.+.|..+++.|++|||||++|..+|..+|.+.
T Consensus 88 ~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~ 120 (301)
T PRK04220 88 KSKEPIIILIGGASGVGTSTIAFELASRLGIRS 120 (301)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 345789999999999999999999999999873
No 457
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.31 E-value=0.016 Score=52.91 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
+.+...+.|.||.|+|||+|.++|+...
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3445679999999999999999999874
No 458
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.31 E-value=0.018 Score=61.66 Aligned_cols=82 Identities=17% Similarity=0.089 Sum_probs=51.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCC------CCC-hHH-----------------HH
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN------AGE-PAK-----------------LI 207 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~------~Ge-~~~-----------------~i 207 (438)
|+.+...+|+.||||+|||+++-.++.+. |-+.++++..+-...+ .|- .+. .+
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 56777899999999999999998888863 5567777653321110 010 000 01
Q ss_pred HHHHHHHHHHHHhCCceeEEecccccccc
Q 013704 208 RQRYREAADIIKKGKMCCLFINDLDAGAG 236 (438)
Q Consensus 208 r~~f~~A~~~~~~~~p~ILfIDEiD~l~~ 236 (438)
........+.++...|.+|+||-+-.+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 12222233344477899999999987743
No 459
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.30 E-value=0.014 Score=54.60 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.+.++|.||+|+|||++++++-+..
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4668899999999999999999986
No 460
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.30 E-value=0.0098 Score=60.29 Aligned_cols=139 Identities=15% Similarity=0.159 Sum_probs=77.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHH-H--HHhCCceEEEeccccc-c--------------------CCCCChHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELV-F--AKMGINPIMMSAGELE-S--------------------GNAGEPAKLIRQRYREA 214 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aI-A--~~lg~~~i~vs~~~l~-s--------------------~~~Ge~~~~ir~~f~~A 214 (438)
...+++.||.|+|||++...+ + ++.|-+++.+...... . +-.|....++..+...-
T Consensus 49 snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L 128 (408)
T KOG2228|consen 49 SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEAL 128 (408)
T ss_pred CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHH
Confidence 467999999999999964433 2 3566677666543211 1 11222222222222211
Q ss_pred HHHHH-hCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCC---
Q 013704 215 ADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST--- 290 (438)
Q Consensus 215 ~~~~~-~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~--- 290 (438)
..--+ ...+.|.++||+|-.++-. .| ..|.+++| ..+....++-||+-|.+.+-
T Consensus 129 ~~~~~~t~~~ViFIldEfDlf~~h~---rQ---------tllYnlfD----------isqs~r~Piciig~Ttrld~lE~ 186 (408)
T KOG2228|consen 129 KKGDETTSGKVIFILDEFDLFAPHS---RQ---------TLLYNLFD----------ISQSARAPICIIGVTTRLDILEL 186 (408)
T ss_pred hcCCCCCCceEEEEeehhhccccch---hh---------HHHHHHHH----------HHhhcCCCeEEEEeeccccHHHH
Confidence 10000 2233466668999887641 11 34678777 23344567778886666554
Q ss_pred CCccccCCCcceEE-Eec-C--CHHHHHHHHHhhh
Q 013704 291 LYAPLIRDGRMEKF-YWA-P--TREDRIGVCSGIF 321 (438)
Q Consensus 291 Ld~aLlR~GRfd~~-i~l-P--~~e~R~~Il~~~l 321 (438)
|..-..+ ||.+. +++ | ..++=..+++..+
T Consensus 187 LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 187 LEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHh--hcccceeeccCCCChHHHHHHHHHHh
Confidence 4445666 99887 553 2 3677777887666
No 461
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=96.29 E-value=0.00048 Score=72.54 Aligned_cols=146 Identities=19% Similarity=0.241 Sum_probs=82.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHH----HHHHhCCceeEEecccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA----DIIKKGKMCCLFINDLD 232 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~----~~~~~~~p~ILfIDEiD 232 (438)
+.--+|+|.|.||+.||-|.+.|.+-.....+..--+ |.-+|-++.-+++-..--. ..+--....|-.|||+|
T Consensus 373 RGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrG---SSGVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfD 449 (721)
T KOG0482|consen 373 RGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRG---SSGVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFD 449 (721)
T ss_pred ecceeEEecCCCchhHHHHHHHHHhcCcccceecCCC---CCccccchhhhcCCCCCeeEeccceEEEccCceEeehhhh
Confidence 3346899999999999999999998755444432211 2223333332221110000 00002345677899999
Q ss_pred ccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC-------------CCCccccCCC
Q 013704 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-------------TLYAPLIRDG 299 (438)
Q Consensus 233 ~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~-------------~Ld~aLlR~G 299 (438)
++..... ..-+++..| ....|.. -|. +..-+.+.-|++++|... .||+||++
T Consensus 450 KM~e~DR-tAIHEVMEQ----QTISIaK-------AGI-~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLS-- 514 (721)
T KOG0482|consen 450 KMDESDR-TAIHEVMEQ----QTISIAK-------AGI-NTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLS-- 514 (721)
T ss_pred hhhhhhh-HHHHHHHHh----hhhhhhh-------hcc-ccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHH--
Confidence 9975421 111122111 1111111 122 223457788899888543 48999999
Q ss_pred cceEEEec---CCHHHHHHHHHhh
Q 013704 300 RMEKFYWA---PTREDRIGVCSGI 320 (438)
Q Consensus 300 Rfd~~i~l---P~~e~R~~Il~~~ 320 (438)
|||..+.+ |+++.-+.+-+++
T Consensus 515 RFDll~Li~D~pdrd~D~~LA~Hi 538 (721)
T KOG0482|consen 515 RFDLLWLIQDRPDRDNDLRLAQHI 538 (721)
T ss_pred hhhhhhhhccCCcccchHHHHHHh
Confidence 99987663 8888777666543
No 462
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.27 E-value=0.019 Score=58.24 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=29.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEecc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 193 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~ 193 (438)
..|..++|.||+|+|||+++..+|..+ +..+..+.+.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 457889999999999999999999875 4455555543
No 463
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.26 E-value=0.0069 Score=62.08 Aligned_cols=71 Identities=15% Similarity=0.156 Sum_probs=44.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCC--ceEEEec-cccccC--------C----CCChHHHHHHHHHHHHHHHHhCC
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSA-GELESG--------N----AGEPAKLIRQRYREAADIIKKGK 222 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~--~~i~vs~-~~l~s~--------~----~Ge~~~~ir~~f~~A~~~~~~~~ 222 (438)
....+|+.||+|+|||+++++++..... .++.+.- .++.-. + .|...-....+++.+. +..
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~L----R~~ 236 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASL----RMR 236 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHh----cCC
Confidence 3467999999999999999999998543 2222211 111100 0 1111123445555555 889
Q ss_pred ceeEEecccc
Q 013704 223 MCCLFINDLD 232 (438)
Q Consensus 223 p~ILfIDEiD 232 (438)
|..|++.|+-
T Consensus 237 pD~IivGEiR 246 (344)
T PRK13851 237 PDRILLGEMR 246 (344)
T ss_pred CCeEEEEeeC
Confidence 9999999984
No 464
>PRK05439 pantothenate kinase; Provisional
Probab=96.24 E-value=0.0072 Score=61.08 Aligned_cols=50 Identities=28% Similarity=0.405 Sum_probs=36.8
Q ss_pred HHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC-----ceEEEecccc
Q 013704 146 ITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI-----NPIMMSAGEL 195 (438)
Q Consensus 146 i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~-----~~i~vs~~~l 195 (438)
..+.|+.....+.|..|.+.||||+|||++|+.++..++. .+..++...+
T Consensus 73 ~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF 127 (311)
T PRK05439 73 ALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF 127 (311)
T ss_pred HHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence 3455665556678999999999999999999999987642 3444554443
No 465
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.0023 Score=67.30 Aligned_cols=47 Identities=23% Similarity=0.195 Sum_probs=31.7
Q ss_pred ChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 135 APAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 135 ~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
.+.|-|-.....+|.-+... ...-.++|++||||||||++|+.+..-
T Consensus 175 ~~D~~DV~GQ~~AKrAleiA-AAGgHnLl~~GpPGtGKTmla~Rl~~l 221 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIA-AAGGHNLLLVGPPGTGKTMLASRLPGL 221 (490)
T ss_pred CcchhhhcCcHHHHHHHHHH-HhcCCcEEEecCCCCchHHhhhhhccc
Confidence 45666655555555544211 112368999999999999999988765
No 466
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.20 E-value=0.0048 Score=56.97 Aligned_cols=32 Identities=34% Similarity=0.618 Sum_probs=26.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccc
Q 013704 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196 (438)
Q Consensus 162 lLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~ 196 (438)
|+|+|+||+|||++++.+++ +|+++ ++++.+.
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~--i~~D~~~ 33 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPV--IDADKIA 33 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCE--EecCHHH
Confidence 78999999999999999999 78765 4445444
No 467
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.20 E-value=0.0084 Score=59.16 Aligned_cols=73 Identities=12% Similarity=0.145 Sum_probs=41.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC---CceEEEec-cccccCCCCC--hHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMG---INPIMMSA-GELESGNAGE--PAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg---~~~i~vs~-~~l~s~~~Ge--~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (438)
..+++.||+|+|||++.+++...+. ..++.+.- .++.-...-. .......-|..+...+-+..|++|+|+|+.
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 3589999999999999999988764 23344321 1211110000 000001123333333338899999999993
No 468
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.17 E-value=0.0079 Score=60.24 Aligned_cols=38 Identities=29% Similarity=0.460 Sum_probs=30.8
Q ss_pred HHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 147 TKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 147 ~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
...|+.....+.|..|.|.||+|+|||++|+.+...+.
T Consensus 50 ~~~f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 50 LEQFLGTNGAKIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred HHHHHhcccCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34555555567899999999999999999999887764
No 469
>PRK13808 adenylate kinase; Provisional
Probab=96.17 E-value=0.0046 Score=62.99 Aligned_cols=33 Identities=30% Similarity=0.490 Sum_probs=27.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccc
Q 013704 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196 (438)
Q Consensus 162 lLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~ 196 (438)
|+|.||||+|||++|+.||+..|+. .++.++++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~--~is~gdlL 35 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIV--QLSTGDML 35 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc--eecccHHH
Confidence 8899999999999999999999875 45545444
No 470
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.16 E-value=0.01 Score=62.11 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=27.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~ 189 (438)
.+.|.|.|++|||||+|++++|+..|...+.
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 4679999999999999999999998887544
No 471
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.15 E-value=0.022 Score=50.44 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=21.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCc
Q 013704 162 LGIWGGKGQGKSFQCELVFAKMGIN 186 (438)
Q Consensus 162 lLL~GPPGtGKT~lA~aIA~~lg~~ 186 (438)
+.|.||+|+|||++++.+++.....
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 6789999999999999999986543
No 472
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=96.15 E-value=0.012 Score=55.29 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh-------CCceEEEecc
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKM-------GINPIMMSAG 193 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~l-------g~~~i~vs~~ 193 (438)
++|+.|++|+|||++.++++..+ ...++.++..
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred eEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 79999999999999999888874 3345556553
No 473
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.12 E-value=0.0051 Score=57.02 Aligned_cols=28 Identities=14% Similarity=0.148 Sum_probs=24.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCce
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINP 187 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~ 187 (438)
..++|.||+|+|||++++.++...+.++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~ 30 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQL 30 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeE
Confidence 3588999999999999999999887654
No 474
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.12 E-value=0.0066 Score=56.26 Aligned_cols=35 Identities=26% Similarity=0.469 Sum_probs=27.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC---CceEEEeccccc
Q 013704 162 LGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELE 196 (438)
Q Consensus 162 lLL~GPPGtGKT~lA~aIA~~lg---~~~i~vs~~~l~ 196 (438)
|++.|+||+|||++|+.+++.++ .++..++..++.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 78999999999999999999973 555666655444
No 475
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=96.10 E-value=0.011 Score=55.11 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=19.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
...+||.||+|+|||.|-..+...
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~ 26 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNG 26 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHS
T ss_pred CceEEEEcCCCCCHHHHHHHHhcC
Confidence 357999999999999998888776
No 476
>PRK08356 hypothetical protein; Provisional
Probab=96.10 E-value=0.0063 Score=56.91 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=25.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccc
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 194 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~ 194 (438)
..++|.||||+|||++|+.+. +.|++ .++.++
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~-~~g~~--~is~~~ 37 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE-EKGFC--RVSCSD 37 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCc--EEeCCC
Confidence 458899999999999999995 46765 455554
No 477
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.09 E-value=0.021 Score=62.32 Aligned_cols=27 Identities=26% Similarity=0.155 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
+++-..+|+.||+|||||+|.|+||.-
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaGL 442 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAGL 442 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 455578999999999999999999987
No 478
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.09 E-value=0.035 Score=59.72 Aligned_cols=82 Identities=18% Similarity=0.118 Sum_probs=51.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCceEEEeccccccCC------CC-----------------Ch-HHHH
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESGN------AG-----------------EP-AKLI 207 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs~~~l~s~~------~G-----------------e~-~~~i 207 (438)
|+.....++++||||+|||+++..++.+ .|-++++++..+-...+ .| .+ ...+
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 5666788999999999999999988865 36677777653211000 00 00 0011
Q ss_pred HHHHHHHHHHHHhCCceeEEecccccccc
Q 013704 208 RQRYREAADIIKKGKMCCLFINDLDAGAG 236 (438)
Q Consensus 208 r~~f~~A~~~~~~~~p~ILfIDEiD~l~~ 236 (438)
...+....+.++..++.+|+||-+..+..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 22233333444577899999999988754
No 479
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.09 E-value=0.02 Score=52.40 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.+...+.|.||.|+|||+|.+.++...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344578999999999999999999863
No 480
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.09 E-value=0.0057 Score=57.13 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
.|.|.||+|+|||++|+.|+..++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999999986
No 481
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.08 E-value=0.024 Score=52.72 Aligned_cols=60 Identities=20% Similarity=0.218 Sum_probs=43.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCceEEEeccccccC---CCCChH----HHHHHHHHHHH
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG---NAGEPA----KLIRQRYREAA 215 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs~~~l~s~---~~Ge~~----~~ir~~f~~A~ 215 (438)
...|..|.|.|.+|+|||++|.++.+. .|...+.+++..+... -.|-+. .+||.+-.-|+
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAk 89 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAK 89 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHH
Confidence 356778999999999999999999998 4889999998766433 234322 34555554444
No 482
>PLN02199 shikimate kinase
Probab=96.07 E-value=0.0067 Score=60.78 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=29.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEe
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs 191 (438)
...|+|.|++|+|||++++.+|+.+|++|+..+
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 457999999999999999999999999987654
No 483
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.06 E-value=0.0069 Score=61.16 Aligned_cols=34 Identities=18% Similarity=0.198 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEec
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~ 192 (438)
|..++|.||+|+|||.+|..+|++++..++..+.
T Consensus 4 ~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds 37 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIELAKRLNGEIISADS 37 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccc
Confidence 5678999999999999999999999887665544
No 484
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=96.05 E-value=0.067 Score=52.16 Aligned_cols=38 Identities=16% Similarity=0.107 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh----CCceEEEec
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 192 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l----g~~~i~vs~ 192 (438)
|..+..-++|.|+||.|||+++..+|... +.++++++.
T Consensus 15 G~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~Sl 56 (259)
T PF03796_consen 15 GLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSL 56 (259)
T ss_dssp SB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEES
T ss_pred CCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcC
Confidence 44555678899999999999999988863 578888776
No 485
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.04 E-value=0.031 Score=56.05 Aligned_cols=29 Identities=28% Similarity=0.237 Sum_probs=24.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
....+..+.|.||||+|||+++..++..+
T Consensus 30 ~~~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 30 YTGNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34567889999999999999999998874
No 486
>PTZ00202 tuzin; Provisional
Probab=96.03 E-value=0.04 Score=58.19 Aligned_cols=44 Identities=25% Similarity=0.350 Sum_probs=33.9
Q ss_pred hhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEecc
Q 013704 150 FLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 193 (438)
Q Consensus 150 ~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~ 193 (438)
.+.......|..+.|.||+|||||++++.+...++...+.++..
T Consensus 277 VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 277 VLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred HHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 33333445677999999999999999999999988666655543
No 487
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.02 E-value=0.019 Score=61.02 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=45.6
Q ss_pred CCCcE-EEEEcCCCCcHHHHHHHHHHHhCCceEEE-eccc-cccCCCCC----hHHHHHHHHHHHHHHHHhCCceeEEec
Q 013704 157 KVPLI-LGIWGGKGQGKSFQCELVFAKMGINPIMM-SAGE-LESGNAGE----PAKLIRQRYREAADIIKKGKMCCLFIN 229 (438)
Q Consensus 157 ~~p~g-lLL~GPPGtGKT~lA~aIA~~lg~~~i~v-s~~~-l~s~~~Ge----~~~~ir~~f~~A~~~~~~~~p~ILfID 229 (438)
..|.| +|+.||.|+|||++..++.++++.+...+ +..+ ++-...|- -...+-.-|..+...+-++.|+||++.
T Consensus 255 ~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVG 334 (500)
T COG2804 255 NRPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVG 334 (500)
T ss_pred hCCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcceeecccccCCCHHHHHHHHhccCCCeEEEe
Confidence 44555 55689999999999999999976544321 1111 11111110 111222346655555558999999999
Q ss_pred cc
Q 013704 230 DL 231 (438)
Q Consensus 230 Ei 231 (438)
||
T Consensus 335 EI 336 (500)
T COG2804 335 EI 336 (500)
T ss_pred cc
Confidence 99
No 488
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.01 E-value=0.0072 Score=56.88 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=28.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccc
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~ 196 (438)
.|.|+|++|+|||++++.+++..|++++ ++..+.
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~~ 36 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIYA 36 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHHH
Confidence 5889999999999999999998888765 555544
No 489
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.00 E-value=0.007 Score=56.55 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
+...++|.||+|+|||+|++.++....
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 457899999999999999999999876
No 490
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=95.99 E-value=0.052 Score=57.09 Aligned_cols=38 Identities=11% Similarity=0.027 Sum_probs=28.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH----hCCceEEEec
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAK----MGINPIMMSA 192 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~----lg~~~i~vs~ 192 (438)
|..+..-++|.|+||+|||+++..+|.. .|.++++++.
T Consensus 191 G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~Sl 232 (434)
T TIGR00665 191 GLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSL 232 (434)
T ss_pred CCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 5555567889999999999998887765 3666666554
No 491
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.99 E-value=0.0065 Score=57.30 Aligned_cols=28 Identities=32% Similarity=0.672 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCC
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGI 185 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~ 185 (438)
.+..+.|.||+|+|||+++++|+..++.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3467789999999999999999998763
No 492
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.97 E-value=0.0064 Score=57.05 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=23.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh-CCceE
Q 013704 162 LGIWGGKGQGKSFQCELVFAKM-GINPI 188 (438)
Q Consensus 162 lLL~GPPGtGKT~lA~aIA~~l-g~~~i 188 (438)
|.+.|+||+|||++|+.+++.+ ++.++
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i 29 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVI 29 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEE
Confidence 6789999999999999999998 44443
No 493
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.97 E-value=0.0059 Score=55.87 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCC
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGI 185 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~ 185 (438)
.++|.||||+|||+++++|+..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 5789999999999999999998754
No 494
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.97 E-value=0.043 Score=54.35 Aligned_cols=87 Identities=17% Similarity=0.207 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCC-CCChHHHHHHHHHHHHH
Q 013704 138 FMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN-AGEPAKLIRQRYREAAD 216 (438)
Q Consensus 138 ~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~-~Ge~~~~ir~~f~~A~~ 216 (438)
+.+.++.|++|----+. .+..++||.|.+|+||+++++..|--.+..++.+.... .| ..+....++.++.+|.
T Consensus 12 lf~~ai~hi~ri~RvL~--~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~---~y~~~~f~~dLk~~~~~ag- 85 (268)
T PF12780_consen 12 LFDEAIEHIARISRVLS--QPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITK---GYSIKDFKEDLKKALQKAG- 85 (268)
T ss_dssp --HHHHHHHHHHHHHHC--STTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTST---TTHHHHHHHHHHHHHHHHH-
T ss_pred eHHHHHHHHHHHHHHHc--CCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeC---CcCHHHHHHHHHHHHHHHh-
Confidence 34455666655322111 22367999999999999999999999998888876542 11 1112233455555442
Q ss_pred HHHhCCceeEEecccc
Q 013704 217 IIKKGKMCCLFINDLD 232 (438)
Q Consensus 217 ~~~~~~p~ILfIDEiD 232 (438)
-+++|.+++|+|-+
T Consensus 86 --~~~~~~vfll~d~q 99 (268)
T PF12780_consen 86 --IKGKPTVFLLTDSQ 99 (268)
T ss_dssp --CS-S-EEEEEECCC
T ss_pred --ccCCCeEEEecCcc
Confidence 16789999998754
No 495
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.97 E-value=0.018 Score=53.37 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
++.++|.||+|+||+++++.++++.
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3568999999999999999999985
No 496
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.96 E-value=0.046 Score=49.99 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.....+.|.||.|+|||+|.++|+...
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 344678999999999999999999874
No 497
>PLN02165 adenylate isopentenyltransferase
Probab=95.94 E-value=0.0075 Score=61.41 Aligned_cols=33 Identities=21% Similarity=0.178 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEe
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs 191 (438)
...++|.||+|+|||+||..||+.++..++..+
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaD 75 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPSEIINSD 75 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCCceecCC
Confidence 347899999999999999999999987655544
No 498
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=95.94 E-value=0.0083 Score=57.08 Aligned_cols=32 Identities=28% Similarity=0.430 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~ 189 (438)
.|..|.|+|++|||||++++.+++++|++++.
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vid 36 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVC 36 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 46789999999999999999999999988543
No 499
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.93 E-value=0.033 Score=58.01 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=28.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh-------CCceEEEecc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM-------GINPIMMSAG 193 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l-------g~~~i~vs~~ 193 (438)
..|..++|+||+|+|||+++..+|..+ +..+..+++.
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D 215 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID 215 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc
Confidence 347899999999999999999998764 3455555543
No 500
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=95.93 E-value=0.0086 Score=57.39 Aligned_cols=29 Identities=34% Similarity=0.479 Sum_probs=26.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceE
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPI 188 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i 188 (438)
..|.|.||+|+|||++++.+|++++++++
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~ 31 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYL 31 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 46889999999999999999999998765
Done!