Query 013704
Match_columns 438
No_of_seqs 393 out of 3003
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 15:32:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013704.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013704hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t15_A Ribulose bisphosphate c 100.0 1.3E-51 4.3E-56 407.5 24.1 293 124-416 1-293 (293)
2 4b4t_J 26S protease regulatory 100.0 2.7E-40 9.4E-45 338.9 19.3 190 154-360 177-372 (405)
3 4b4t_I 26S protease regulatory 100.0 2.7E-39 9.4E-44 332.9 19.3 190 154-360 211-406 (437)
4 4b4t_M 26S protease regulatory 100.0 4.1E-39 1.4E-43 333.9 19.3 191 154-361 210-406 (434)
5 4b4t_L 26S protease subunit RP 100.0 8.7E-39 3E-43 331.7 20.7 190 154-360 210-405 (437)
6 4b4t_H 26S protease regulatory 100.0 1E-38 3.6E-43 331.3 18.9 190 154-360 238-433 (467)
7 4b4t_K 26S protease regulatory 100.0 5.3E-38 1.8E-42 325.2 19.5 205 153-375 200-415 (428)
8 3cf2_A TER ATPase, transitiona 100.0 2.1E-37 7.2E-42 341.6 8.1 252 154-424 506-769 (806)
9 3cf2_A TER ATPase, transitiona 100.0 3.2E-33 1.1E-37 308.4 19.7 221 124-364 202-429 (806)
10 1xwi_A SKD1 protein; VPS4B, AA 100.0 3.3E-29 1.1E-33 250.4 25.7 245 155-420 41-321 (322)
11 3eie_A Vacuolar protein sortin 100.0 1.8E-29 6.1E-34 251.6 20.3 245 155-420 47-320 (322)
12 3cf0_A Transitional endoplasmi 100.0 8.5E-30 2.9E-34 251.7 16.0 245 155-417 45-300 (301)
13 2ce7_A Cell division protein F 100.0 1E-28 3.4E-33 259.2 19.6 231 154-403 44-286 (476)
14 2qp9_X Vacuolar protein sortin 100.0 1.8E-28 6.3E-33 248.1 20.5 245 155-420 80-353 (355)
15 2x8a_A Nuclear valosin-contain 100.0 6.2E-29 2.1E-33 243.2 14.9 190 154-363 39-239 (274)
16 2zan_A Vacuolar protein sortin 100.0 1.6E-28 5.4E-33 255.8 13.4 244 156-420 164-443 (444)
17 1lv7_A FTSH; alpha/beta domain 99.9 1.7E-26 5.7E-31 221.8 21.7 187 155-359 41-234 (257)
18 3h4m_A Proteasome-activating n 99.9 3.9E-27 1.3E-31 228.7 17.3 189 155-360 47-241 (285)
19 2dhr_A FTSH; AAA+ protein, hex 99.9 5.9E-27 2E-31 247.1 18.8 232 153-403 58-301 (499)
20 2qz4_A Paraplegin; AAA+, SPG7, 99.9 3.2E-27 1.1E-31 225.8 14.3 185 155-358 35-230 (262)
21 3d8b_A Fidgetin-like protein 1 99.9 4.5E-26 1.5E-30 230.5 19.2 232 157-420 115-356 (357)
22 3hu3_A Transitional endoplasmi 99.9 3.1E-26 1E-30 241.4 15.8 189 155-363 234-428 (489)
23 3vfd_A Spastin; ATPase, microt 99.9 2.2E-25 7.6E-30 227.5 20.3 231 157-419 146-386 (389)
24 1ypw_A Transitional endoplasmi 99.9 6E-28 2.1E-32 268.2 -0.3 252 155-424 507-769 (806)
25 3b9p_A CG5977-PA, isoform A; A 99.9 2.4E-25 8.1E-30 217.7 17.8 231 157-418 52-292 (297)
26 1ixz_A ATP-dependent metallopr 99.9 4.4E-25 1.5E-29 211.5 15.6 187 154-359 44-238 (254)
27 2r62_A Cell division protease 99.9 3.1E-26 1.1E-30 220.7 2.4 184 155-356 40-232 (268)
28 1iy2_A ATP-dependent metallopr 99.9 6.3E-24 2.1E-28 206.7 16.6 186 154-358 68-261 (278)
29 3thg_A Ribulose bisphosphate c 99.9 4.5E-23 1.5E-27 170.4 11.8 103 308-410 5-107 (107)
30 1ypw_A Transitional endoplasmi 99.9 1.2E-21 4.3E-26 217.5 21.3 221 122-362 200-427 (806)
31 2c9o_A RUVB-like 1; hexameric 99.8 1.1E-22 3.9E-27 212.0 -2.3 173 155-344 59-257 (456)
32 1d2n_A N-ethylmaleimide-sensit 99.8 6.9E-19 2.3E-23 170.2 15.8 165 154-340 59-228 (272)
33 3syl_A Protein CBBX; photosynt 99.8 1.7E-18 6E-23 169.4 18.4 157 154-336 62-234 (309)
34 3m6a_A ATP-dependent protease 99.7 1.4E-17 4.6E-22 177.5 13.8 166 158-340 107-297 (543)
35 1ofh_A ATP-dependent HSL prote 99.7 1.1E-16 3.7E-21 155.9 12.7 157 157-319 48-213 (310)
36 1g41_A Heat shock protein HSLU 99.7 1.3E-17 4.6E-22 173.1 5.4 134 158-317 49-188 (444)
37 1jbk_A CLPB protein; beta barr 99.7 2.2E-16 7.7E-21 141.1 9.4 135 157-317 41-194 (195)
38 3uk6_A RUVB-like 2; hexameric 99.6 3E-15 1E-19 149.9 16.5 155 157-339 68-292 (368)
39 3hws_A ATP-dependent CLP prote 99.6 1.2E-16 4E-21 161.2 6.0 160 157-319 49-267 (363)
40 3pfi_A Holliday junction ATP-d 99.6 7.3E-15 2.5E-19 145.7 18.1 159 157-342 53-220 (338)
41 1l8q_A Chromosomal replication 99.6 1.7E-14 5.7E-19 142.8 16.8 162 147-338 26-198 (324)
42 3pxg_A Negative regulator of g 99.6 1E-14 3.5E-19 152.6 15.2 142 158-340 200-366 (468)
43 4fcw_A Chaperone protein CLPB; 99.6 2.3E-14 7.7E-19 140.0 16.0 176 138-336 25-255 (311)
44 3u61_B DNA polymerase accessor 99.6 2.2E-14 7.6E-19 141.6 15.3 149 157-340 46-207 (324)
45 3te6_A Regulatory protein SIR3 99.6 8.6E-15 3E-19 146.1 12.2 137 157-322 43-212 (318)
46 1hqc_A RUVB; extended AAA-ATPa 99.6 1.6E-14 5.4E-19 142.0 13.5 159 158-342 37-204 (324)
47 1r6b_X CLPA protein; AAA+, N-t 99.6 7.4E-14 2.5E-18 153.7 20.3 140 158-322 206-363 (758)
48 2p65_A Hypothetical protein PF 99.6 6.3E-15 2.2E-19 131.7 9.4 126 157-307 41-183 (187)
49 3pvs_A Replication-associated 99.6 2.8E-14 9.7E-19 148.6 15.7 144 160-340 51-206 (447)
50 1um8_A ATP-dependent CLP prote 99.6 2.1E-14 7.1E-19 145.2 13.6 105 157-261 70-177 (376)
51 2chg_A Replication factor C sm 99.5 1.3E-13 4.5E-18 125.8 16.7 145 161-340 40-195 (226)
52 1qvr_A CLPB protein; coiled co 99.5 1.9E-14 6.5E-19 160.7 12.9 155 158-338 190-371 (854)
53 3pxi_A Negative regulator of g 99.5 6E-14 2.1E-18 154.7 14.5 125 157-323 199-340 (758)
54 3pxi_A Negative regulator of g 99.5 2.3E-13 7.7E-18 150.1 19.0 155 157-336 518-701 (758)
55 2z4s_A Chromosomal replication 99.5 5.8E-14 2E-18 145.8 12.7 166 145-341 118-298 (440)
56 1r6b_X CLPA protein; AAA+, N-t 99.5 8.8E-14 3E-18 153.1 14.8 142 160-322 489-667 (758)
57 2v1u_A Cell division control p 99.5 4E-13 1.4E-17 134.0 15.1 141 157-322 42-215 (387)
58 1sxj_A Activator 1 95 kDa subu 99.5 8.4E-14 2.9E-18 147.2 9.9 157 158-344 76-246 (516)
59 2qby_B CDC6 homolog 3, cell di 99.5 5.3E-13 1.8E-17 133.7 14.3 153 157-341 43-237 (384)
60 1njg_A DNA polymerase III subu 99.4 1.6E-12 5.6E-17 119.6 15.6 148 158-340 44-219 (250)
61 1sxj_D Activator 1 41 kDa subu 99.4 1.4E-12 4.9E-17 129.1 14.2 146 161-340 60-226 (353)
62 2chq_A Replication factor C sm 99.4 1.3E-12 4.5E-17 127.2 13.4 146 161-340 40-195 (319)
63 1qvr_A CLPB protein; coiled co 99.4 4.3E-12 1.5E-16 141.7 15.7 157 160-336 589-796 (854)
64 2r44_A Uncharacterized protein 99.4 2.2E-12 7.5E-17 127.7 11.2 141 160-323 47-200 (331)
65 3bos_A Putative DNA replicatio 99.3 1.2E-11 4.1E-16 115.0 14.7 145 158-340 51-208 (242)
66 1g8p_A Magnesium-chelatase 38 99.3 4.1E-13 1.4E-17 133.1 4.6 145 160-320 46-231 (350)
67 2qby_A CDC6 homolog 1, cell di 99.3 2.6E-11 8.8E-16 120.6 16.4 151 157-333 43-226 (386)
68 1iqp_A RFCS; clamp loader, ext 99.3 1.4E-11 4.8E-16 120.3 14.1 146 161-340 48-203 (327)
69 2bjv_A PSP operon transcriptio 99.3 5.9E-12 2E-16 120.8 10.9 131 159-313 29-182 (265)
70 1in4_A RUVB, holliday junction 99.3 9.3E-11 3.2E-15 117.0 19.7 159 157-342 49-216 (334)
71 1a5t_A Delta prime, HOLB; zinc 99.3 2.9E-11 1E-15 120.6 15.7 150 157-340 22-196 (334)
72 1sxj_B Activator 1 37 kDa subu 99.3 1.9E-11 6.5E-16 119.1 13.7 148 158-340 42-200 (323)
73 1fnn_A CDC6P, cell division co 99.3 2.6E-11 8.9E-16 121.2 14.4 152 160-338 45-227 (389)
74 1jr3_A DNA polymerase III subu 99.3 1E-10 3.4E-15 116.6 17.8 149 157-340 36-212 (373)
75 3n70_A Transport activator; si 99.3 9E-12 3.1E-16 109.4 8.4 90 159-288 24-116 (145)
76 1sxj_E Activator 1 40 kDa subu 99.3 7.4E-11 2.5E-15 117.2 15.6 148 157-338 35-226 (354)
77 1ojl_A Transcriptional regulat 99.2 4E-11 1.4E-15 118.4 12.6 158 158-340 24-219 (304)
78 4akg_A Glutathione S-transfera 99.2 1E-11 3.4E-16 151.4 9.1 171 159-351 1267-1461(2695)
79 3nbx_X ATPase RAVA; AAA+ ATPas 99.2 1.2E-11 4.1E-16 130.4 7.2 139 160-321 42-196 (500)
80 3f9v_A Minichromosome maintena 99.2 1.4E-11 4.9E-16 132.5 6.9 138 161-323 329-492 (595)
81 3co5_A Putative two-component 99.2 4.3E-12 1.5E-16 111.4 1.8 90 159-288 27-116 (143)
82 1sxj_C Activator 1 40 kDa subu 99.2 3E-10 1E-14 113.1 14.9 143 158-335 46-198 (340)
83 2gno_A DNA polymerase III, gam 99.2 2E-10 7E-15 113.7 13.2 129 159-321 18-152 (305)
84 3ec2_A DNA replication protein 99.1 3.5E-10 1.2E-14 102.1 12.0 101 121-234 5-112 (180)
85 2w58_A DNAI, primosome compone 99.0 1.5E-09 5.1E-14 99.4 12.6 107 118-235 17-128 (202)
86 3cmw_A Protein RECA, recombina 99.0 3.9E-10 1.3E-14 132.7 7.7 113 160-289 1083-1219(1706)
87 2qgz_A Helicase loader, putati 98.9 6.7E-10 2.3E-14 110.0 6.1 105 120-235 118-227 (308)
88 2vhj_A Ntpase P4, P4; non- hyd 98.9 1.2E-09 4E-14 109.0 6.8 122 155-295 119-242 (331)
89 1w5s_A Origin recognition comp 98.9 5.7E-09 1.9E-13 105.1 11.8 160 158-339 49-250 (412)
90 2kjq_A DNAA-related protein; s 98.8 4.5E-09 1.5E-13 93.1 6.3 59 158-235 35-96 (149)
91 2r2a_A Uncharacterized protein 98.8 8.6E-09 3E-13 95.9 7.3 122 159-307 5-150 (199)
92 1tue_A Replication protein E1; 98.8 1.1E-08 3.9E-13 95.7 7.6 125 147-306 48-176 (212)
93 1svm_A Large T antigen; AAA+ f 98.7 5.4E-08 1.8E-12 99.1 9.5 118 155-309 165-284 (377)
94 3k1j_A LON protease, ATP-depen 98.6 1.2E-07 4.1E-12 102.0 11.9 103 220-338 199-327 (604)
95 3vkg_A Dynein heavy chain, cyt 98.6 6.8E-08 2.3E-12 119.0 9.0 141 160-321 1305-1469(3245)
96 4akg_A Glutathione S-transfera 98.5 3.7E-07 1.3E-11 111.8 12.0 140 159-317 645-789 (2695)
97 2qen_A Walker-type ATPase; unk 98.5 1.6E-06 5.4E-11 84.7 13.6 156 160-339 32-239 (350)
98 3cmu_A Protein RECA, recombina 98.4 4.5E-07 1.5E-11 108.2 10.4 102 155-260 1423-1548(2050)
99 2fna_A Conserved hypothetical 98.4 3.3E-06 1.1E-10 82.5 14.7 35 160-194 31-65 (357)
100 1u0j_A DNA replication protein 98.3 3E-06 1E-10 82.3 11.5 41 144-185 90-130 (267)
101 2cvh_A DNA repair and recombin 98.2 5.4E-06 1.8E-10 76.0 9.9 40 155-194 16-55 (220)
102 3dzd_A Transcriptional regulat 98.2 6.4E-06 2.2E-10 83.3 10.7 157 160-340 153-345 (368)
103 1ye8_A Protein THEP1, hypothet 98.1 7.3E-06 2.5E-10 74.5 8.5 27 161-187 2-28 (178)
104 1ny5_A Transcriptional regulat 98.1 6.6E-06 2.3E-10 83.6 8.3 106 160-288 161-282 (387)
105 3f8t_A Predicted ATPase involv 98.0 1.9E-06 6.6E-11 89.8 3.3 126 160-313 240-386 (506)
106 1n0w_A DNA repair protein RAD5 98.0 1.4E-05 4.8E-10 74.3 8.5 83 155-237 20-134 (243)
107 3vkg_A Dynein heavy chain, cyt 98.0 2.4E-05 8.3E-10 96.9 12.5 139 160-317 605-749 (3245)
108 3kw6_A 26S protease regulatory 97.9 1.3E-05 4.4E-10 62.9 6.0 51 307-360 2-56 (78)
109 2krk_A 26S protease regulatory 97.9 1.3E-05 4.5E-10 64.4 6.2 52 307-361 10-65 (86)
110 2w0m_A SSO2452; RECA, SSPF, un 97.9 7.9E-05 2.7E-09 68.3 11.2 38 155-192 19-59 (235)
111 3hr8_A Protein RECA; alpha and 97.9 3.5E-05 1.2E-09 77.8 9.3 83 154-236 56-153 (356)
112 3cmu_A Protein RECA, recombina 97.9 3E-05 1E-09 92.8 9.8 82 155-236 728-824 (2050)
113 1qhx_A CPT, protein (chloramph 97.8 2.6E-05 9E-10 69.2 6.7 35 159-193 3-37 (178)
114 2zr9_A Protein RECA, recombina 97.8 2.8E-05 9.6E-10 78.1 7.4 82 155-236 57-153 (349)
115 1xp8_A RECA protein, recombina 97.8 7.6E-05 2.6E-09 75.5 10.4 83 155-237 70-167 (366)
116 2ehv_A Hypothetical protein PH 97.7 0.00016 5.4E-09 67.3 10.8 38 155-192 26-67 (251)
117 2z43_A DNA repair and recombin 97.7 4.3E-05 1.5E-09 75.6 7.1 82 155-236 103-217 (324)
118 1u94_A RECA protein, recombina 97.7 6E-05 2.1E-09 76.0 7.8 82 155-236 59-155 (356)
119 1jr3_D DNA polymerase III, del 97.7 0.00017 5.9E-09 71.2 10.9 147 157-340 16-176 (343)
120 1v5w_A DMC1, meiotic recombina 97.7 4.6E-05 1.6E-09 76.1 6.7 82 155-236 118-233 (343)
121 4a74_A DNA repair and recombin 97.6 0.00012 4.1E-09 67.2 8.5 29 155-183 21-49 (231)
122 3cmw_A Protein RECA, recombina 97.6 7.3E-05 2.5E-09 88.4 8.6 82 155-236 728-824 (1706)
123 2dr3_A UPF0273 protein PH0284; 97.6 0.00034 1.2E-08 64.8 11.7 38 155-192 19-59 (247)
124 1pzn_A RAD51, DNA repair and r 97.6 0.0002 6.7E-09 71.8 10.4 82 155-236 127-245 (349)
125 1gvn_B Zeta; postsegregational 97.6 9.4E-05 3.2E-09 72.1 7.7 62 135-196 8-70 (287)
126 2p5t_B PEZT; postsegregational 97.6 0.00023 7.7E-09 67.7 10.2 55 141-195 13-68 (253)
127 1g5t_A COB(I)alamin adenosyltr 97.6 0.00015 5E-09 67.2 8.5 119 160-306 29-176 (196)
128 3trf_A Shikimate kinase, SK; a 97.6 3.6E-05 1.2E-09 68.9 4.2 32 159-190 5-36 (185)
129 2rhm_A Putative kinase; P-loop 97.6 5.9E-05 2E-09 67.6 5.4 34 156-189 2-35 (193)
130 2zts_A Putative uncharacterize 97.5 0.00022 7.5E-09 66.2 8.7 38 155-192 26-67 (251)
131 3iij_A Coilin-interacting nucl 97.5 5.4E-05 1.8E-09 67.6 4.3 35 156-190 8-42 (180)
132 3lda_A DNA repair protein RAD5 97.5 0.00023 7.8E-09 72.8 9.4 83 155-237 174-288 (400)
133 2orw_A Thymidine kinase; TMTK, 97.5 4.1E-05 1.4E-09 69.8 3.4 31 160-190 4-37 (184)
134 3a4m_A L-seryl-tRNA(SEC) kinas 97.5 0.0002 6.9E-09 68.4 8.4 39 158-196 3-44 (260)
135 3umf_A Adenylate kinase; rossm 97.5 7.7E-05 2.6E-09 70.1 5.1 43 152-196 22-64 (217)
136 3io5_A Recombination and repai 97.5 0.00012 4E-09 72.9 6.5 82 155-237 25-126 (333)
137 3vaa_A Shikimate kinase, SK; s 97.5 7.1E-05 2.4E-09 68.3 4.4 34 157-190 23-56 (199)
138 2cdn_A Adenylate kinase; phosp 97.5 9.2E-05 3.1E-09 67.4 4.7 35 156-190 17-51 (201)
139 2r6a_A DNAB helicase, replicat 97.4 0.00024 8.2E-09 73.5 8.0 38 155-192 199-240 (454)
140 1tev_A UMP-CMP kinase; ploop, 97.4 8.6E-05 2.9E-09 66.3 4.0 31 159-189 3-33 (196)
141 1g41_A Heat shock protein HSLU 97.4 0.00071 2.4E-08 70.1 11.3 104 203-318 237-346 (444)
142 2b8t_A Thymidine kinase; deoxy 97.4 0.0003 1E-08 66.4 7.7 74 160-234 13-101 (223)
143 2c95_A Adenylate kinase 1; tra 97.4 0.0001 3.6E-09 66.1 4.2 33 158-190 8-40 (196)
144 2q6t_A DNAB replication FORK h 97.4 0.00067 2.3E-08 69.9 10.7 39 154-192 195-237 (444)
145 3kb2_A SPBC2 prophage-derived 97.4 0.00013 4.5E-09 63.8 4.6 31 161-191 3-33 (173)
146 2iyv_A Shikimate kinase, SK; t 97.4 9.2E-05 3.1E-09 66.2 3.6 30 161-190 4-33 (184)
147 2i1q_A DNA repair and recombin 97.3 0.00034 1.1E-08 68.7 7.7 82 155-236 94-218 (322)
148 1y63_A LMAJ004144AAA protein; 97.3 0.00011 3.6E-09 66.3 3.8 33 158-190 9-42 (184)
149 1zuh_A Shikimate kinase; alpha 97.3 0.00012 4.1E-09 64.5 4.0 31 160-190 8-38 (168)
150 1aky_A Adenylate kinase; ATP:A 97.3 0.00016 5.4E-09 66.8 4.9 34 157-190 2-35 (220)
151 1qf9_A UMP/CMP kinase, protein 97.3 0.00017 5.8E-09 64.2 4.6 33 158-190 5-37 (194)
152 3cm0_A Adenylate kinase; ATP-b 97.3 0.00016 5.4E-09 64.6 4.1 30 159-188 4-33 (186)
153 3vlf_B 26S protease regulatory 97.3 0.00016 5.6E-09 58.1 3.8 50 309-361 2-55 (88)
154 2bwj_A Adenylate kinase 5; pho 97.3 0.00015 5E-09 65.3 3.9 31 159-189 12-42 (199)
155 1via_A Shikimate kinase; struc 97.3 0.00017 5.9E-09 64.0 4.3 29 161-189 6-34 (175)
156 2vli_A Antibiotic resistance p 97.3 0.00012 4.3E-09 64.9 3.3 31 158-188 4-34 (183)
157 1ly1_A Polynucleotide kinase; 97.3 0.00012 4.1E-09 64.6 3.2 28 159-186 2-30 (181)
158 1kag_A SKI, shikimate kinase I 97.3 0.00018 6E-09 63.5 4.2 30 159-188 4-33 (173)
159 1ukz_A Uridylate kinase; trans 97.3 0.00016 5.5E-09 65.7 4.1 34 157-190 13-46 (203)
160 3lw7_A Adenylate kinase relate 97.3 0.00014 4.9E-09 63.2 3.6 30 160-190 2-31 (179)
161 1cr0_A DNA primase/helicase; R 97.3 0.00056 1.9E-08 66.1 8.1 37 155-191 31-71 (296)
162 1zd8_A GTP:AMP phosphotransfer 97.2 0.00016 5.3E-09 67.3 3.7 33 157-189 5-37 (227)
163 1zp6_A Hypothetical protein AT 97.2 0.00017 5.8E-09 64.6 3.8 39 156-194 6-44 (191)
164 3t61_A Gluconokinase; PSI-biol 97.2 0.0002 7E-09 65.1 4.3 31 159-189 18-48 (202)
165 3tlx_A Adenylate kinase 2; str 97.2 0.00019 6.6E-09 67.9 4.2 34 157-190 27-60 (243)
166 1kht_A Adenylate kinase; phosp 97.2 0.00021 7.2E-09 63.6 4.0 26 159-184 3-28 (192)
167 1e6c_A Shikimate kinase; phosp 97.2 0.00019 6.5E-09 63.1 3.5 30 160-189 3-32 (173)
168 1ak2_A Adenylate kinase isoenz 97.2 0.00031 1E-08 65.7 5.0 34 157-190 14-47 (233)
169 3be4_A Adenylate kinase; malar 97.2 0.0002 6.8E-09 66.2 3.6 32 159-190 5-36 (217)
170 1nlf_A Regulatory protein REPA 97.2 0.0021 7.1E-08 61.6 10.8 29 155-183 26-54 (279)
171 2ze6_A Isopentenyl transferase 97.1 0.00031 1E-08 67.0 4.7 32 161-192 3-34 (253)
172 1zak_A Adenylate kinase; ATP:A 97.1 0.00025 8.5E-09 65.5 3.7 31 158-188 4-34 (222)
173 2pt5_A Shikimate kinase, SK; a 97.1 0.00032 1.1E-08 61.5 4.0 29 161-189 2-30 (168)
174 3dl0_A Adenylate kinase; phosp 97.1 0.00026 9E-09 64.9 3.6 30 161-190 2-31 (216)
175 3fb4_A Adenylate kinase; psych 97.1 0.00028 9.7E-09 64.6 3.8 30 161-190 2-31 (216)
176 3aji_B S6C, proteasome (prosom 97.1 0.00028 9.6E-09 55.7 3.0 49 309-360 2-54 (83)
177 3sr0_A Adenylate kinase; phosp 97.1 0.0004 1.4E-08 64.5 4.5 33 161-195 2-34 (206)
178 1knq_A Gluconate kinase; ALFA/ 97.0 0.00051 1.8E-08 60.7 4.9 35 159-195 8-42 (175)
179 4eun_A Thermoresistant glucoki 97.0 0.0005 1.7E-08 62.6 4.9 36 158-195 28-63 (200)
180 1z6t_A APAF-1, apoptotic prote 97.0 0.0033 1.1E-07 66.3 11.9 24 158-181 146-169 (591)
181 1vma_A Cell division protein F 97.0 0.004 1.4E-07 61.3 11.6 73 156-232 101-196 (306)
182 2pez_A Bifunctional 3'-phospho 97.0 0.00065 2.2E-08 60.5 5.4 37 158-194 4-43 (179)
183 3sfz_A APAF-1, apoptotic pepti 97.0 0.0081 2.8E-07 68.1 15.4 147 157-344 145-323 (1249)
184 2ga8_A Hypothetical 39.9 kDa p 97.0 0.00038 1.3E-08 70.1 3.9 30 160-189 25-54 (359)
185 3bh0_A DNAB-like replicative h 97.0 0.002 7E-08 63.3 9.1 39 154-192 63-104 (315)
186 3uie_A Adenylyl-sulfate kinase 97.0 0.0023 7.8E-08 58.1 8.8 39 157-195 23-64 (200)
187 2v54_A DTMP kinase, thymidylat 97.0 0.00053 1.8E-08 61.9 4.4 34 158-191 3-37 (204)
188 2pbr_A DTMP kinase, thymidylat 97.0 0.00072 2.5E-08 60.2 5.2 31 161-191 2-35 (195)
189 1e4v_A Adenylate kinase; trans 97.0 0.00045 1.5E-08 63.5 3.8 30 161-190 2-31 (214)
190 2yvu_A Probable adenylyl-sulfa 96.9 0.0028 9.5E-08 56.7 9.0 39 157-195 11-52 (186)
191 2fz4_A DNA repair protein RAD2 96.9 0.0018 6.3E-08 60.9 8.0 33 161-193 110-142 (237)
192 1cke_A CK, MSSA, protein (cyti 96.9 0.0007 2.4E-08 62.3 4.9 30 159-188 5-34 (227)
193 3dm5_A SRP54, signal recogniti 96.9 0.0055 1.9E-07 63.4 12.1 71 158-232 99-192 (443)
194 2r8r_A Sensor protein; KDPD, P 96.9 0.0016 5.3E-08 61.7 7.3 34 159-192 6-42 (228)
195 2bbw_A Adenylate kinase 4, AK4 96.9 0.00074 2.5E-08 63.5 5.0 31 158-188 26-56 (246)
196 1uf9_A TT1252 protein; P-loop, 96.9 0.00062 2.1E-08 61.3 3.9 32 157-189 6-37 (203)
197 3bgw_A DNAB-like replicative h 96.9 0.0034 1.2E-07 64.9 9.9 38 155-192 193-233 (444)
198 1nks_A Adenylate kinase; therm 96.9 0.00048 1.6E-08 61.2 3.0 32 161-192 3-37 (194)
199 2jaq_A Deoxyguanosine kinase; 96.8 0.00077 2.6E-08 60.5 4.3 29 161-189 2-30 (205)
200 1m7g_A Adenylylsulfate kinase; 96.8 0.0025 8.5E-08 58.4 7.8 39 157-195 23-65 (211)
201 2wwf_A Thymidilate kinase, put 96.8 0.00041 1.4E-08 63.1 2.4 31 157-187 8-38 (212)
202 2z0h_A DTMP kinase, thymidylat 96.8 0.00095 3.3E-08 59.7 4.8 31 161-191 2-35 (197)
203 2plr_A DTMP kinase, probable t 96.8 0.00081 2.8E-08 60.8 4.3 28 159-186 4-31 (213)
204 2xb4_A Adenylate kinase; ATP-b 96.8 0.00081 2.8E-08 62.5 4.3 29 161-189 2-30 (223)
205 3crm_A TRNA delta(2)-isopenten 96.8 0.00078 2.7E-08 67.0 4.4 35 159-193 5-39 (323)
206 1q57_A DNA primase/helicase; d 96.8 0.0052 1.8E-07 64.1 10.9 38 155-192 238-279 (503)
207 3r20_A Cytidylate kinase; stru 96.8 0.00092 3.2E-08 63.4 4.7 32 158-189 8-39 (233)
208 1uj2_A Uridine-cytidine kinase 96.8 0.0011 3.9E-08 62.6 5.3 41 157-197 20-68 (252)
209 1nn5_A Similar to deoxythymidy 96.8 0.0005 1.7E-08 62.5 2.8 29 157-185 7-35 (215)
210 2if2_A Dephospho-COA kinase; a 96.8 0.00068 2.3E-08 61.5 3.6 30 161-191 3-32 (204)
211 3ake_A Cytidylate kinase; CMP 96.7 0.0012 4.2E-08 59.5 4.9 30 161-190 4-33 (208)
212 1jjv_A Dephospho-COA kinase; P 96.7 0.00096 3.3E-08 60.7 4.2 29 160-189 3-31 (206)
213 3jvv_A Twitching mobility prot 96.7 0.0017 5.9E-08 65.3 6.3 69 160-232 124-206 (356)
214 2iut_A DNA translocase FTSK; n 96.7 0.012 4E-07 62.8 12.9 72 224-318 345-420 (574)
215 4a1f_A DNAB helicase, replicat 96.7 0.0019 6.6E-08 64.5 6.2 38 155-192 42-82 (338)
216 1vht_A Dephospho-COA kinase; s 96.7 0.0014 4.9E-08 60.1 4.8 32 158-190 3-34 (218)
217 2qt1_A Nicotinamide riboside k 96.7 0.00088 3E-08 61.0 3.3 35 154-188 16-51 (207)
218 2eyu_A Twitching motility prot 96.7 0.0021 7.2E-08 61.7 6.1 27 157-183 23-49 (261)
219 3tau_A Guanylate kinase, GMP k 96.6 0.0019 6.4E-08 59.3 5.1 28 158-185 7-34 (208)
220 2axn_A 6-phosphofructo-2-kinas 96.6 0.0027 9.2E-08 67.0 6.9 37 157-193 33-72 (520)
221 4gp7_A Metallophosphoesterase; 96.6 0.0034 1.2E-07 55.8 6.6 22 157-178 7-28 (171)
222 2h92_A Cytidylate kinase; ross 96.6 0.0015 5.1E-08 59.9 4.2 32 159-190 3-34 (219)
223 1rz3_A Hypothetical protein rb 96.6 0.0043 1.5E-07 56.5 7.3 38 156-193 19-59 (201)
224 2grj_A Dephospho-COA kinase; T 96.5 0.0014 4.7E-08 60.1 3.8 31 160-190 13-43 (192)
225 1q3t_A Cytidylate kinase; nucl 96.5 0.0021 7.2E-08 60.0 5.0 34 156-189 13-46 (236)
226 3a8t_A Adenylate isopentenyltr 96.5 0.0048 1.6E-07 61.7 7.8 36 157-192 38-73 (339)
227 2f6r_A COA synthase, bifunctio 96.5 0.0015 5.1E-08 63.2 4.0 33 157-190 73-105 (281)
228 3kl4_A SRP54, signal recogniti 96.5 0.0092 3.2E-07 61.5 10.1 36 158-193 96-134 (433)
229 2dzn_B 26S protease regulatory 96.5 0.00052 1.8E-08 54.2 0.5 48 311-361 1-52 (82)
230 3zvl_A Bifunctional polynucleo 96.5 0.0024 8.1E-08 65.3 5.6 38 156-195 255-292 (416)
231 4e22_A Cytidylate kinase; P-lo 96.5 0.0023 7.9E-08 60.7 4.9 30 159-188 27-56 (252)
232 1ltq_A Polynucleotide kinase; 96.4 0.0017 5.7E-08 62.6 3.8 30 159-188 2-32 (301)
233 3nwj_A ATSK2; P loop, shikimat 96.4 0.0021 7.2E-08 61.4 4.4 31 160-190 49-79 (250)
234 2ewv_A Twitching motility prot 96.4 0.0032 1.1E-07 63.5 5.6 27 157-183 134-160 (372)
235 2qor_A Guanylate kinase; phosp 96.3 0.0021 7.1E-08 58.6 3.6 28 157-184 10-37 (204)
236 3foz_A TRNA delta(2)-isopenten 96.3 0.0032 1.1E-07 62.3 5.1 36 157-192 8-43 (316)
237 3ney_A 55 kDa erythrocyte memb 96.3 0.0038 1.3E-07 57.7 5.2 27 158-184 18-44 (197)
238 2j41_A Guanylate kinase; GMP, 96.3 0.0026 8.8E-08 57.3 4.0 27 157-183 4-30 (207)
239 3e1s_A Exodeoxyribonuclease V, 96.3 0.0047 1.6E-07 65.9 6.4 34 159-192 204-240 (574)
240 2c9o_A RUVB-like 1; hexameric 96.2 0.0095 3.3E-07 61.4 8.4 81 223-331 296-391 (456)
241 2j37_W Signal recognition part 96.2 0.024 8.3E-07 59.5 11.3 36 157-192 99-137 (504)
242 3c8u_A Fructokinase; YP_612366 96.2 0.0056 1.9E-07 55.9 5.6 28 157-184 20-47 (208)
243 3fdi_A Uncharacterized protein 96.1 0.0043 1.5E-07 57.0 4.6 30 160-189 7-36 (201)
244 3asz_A Uridine kinase; cytidin 96.1 0.0037 1.3E-07 56.8 4.0 28 157-184 4-31 (211)
245 2bdt_A BH3686; alpha-beta prot 96.1 0.0044 1.5E-07 55.4 4.3 32 160-192 3-34 (189)
246 1kgd_A CASK, peripheral plasma 96.1 0.0042 1.4E-07 55.6 4.2 26 159-184 5-30 (180)
247 3d3q_A TRNA delta(2)-isopenten 96.1 0.0037 1.3E-07 62.5 4.1 32 160-191 8-39 (340)
248 3tqc_A Pantothenate kinase; bi 96.1 0.0082 2.8E-07 59.5 6.6 39 146-184 79-117 (321)
249 1ex7_A Guanylate kinase; subst 96.1 0.0058 2E-07 55.8 5.1 24 162-185 4-27 (186)
250 3gmt_A Adenylate kinase; ssgci 96.0 0.0043 1.5E-07 58.7 4.3 30 160-189 9-38 (230)
251 1xx6_A Thymidine kinase; NESG, 96.0 0.0098 3.3E-07 54.5 6.5 33 159-191 8-43 (191)
252 1x6v_B Bifunctional 3'-phospho 96.0 0.013 4.4E-07 63.2 8.3 38 158-195 51-91 (630)
253 2a5y_B CED-4; apoptosis; HET: 96.0 0.016 5.5E-07 61.0 9.0 24 158-181 151-174 (549)
254 3ice_A Transcription terminati 96.0 0.018 6.1E-07 58.7 8.7 78 158-235 173-274 (422)
255 3exa_A TRNA delta(2)-isopenten 96.0 0.0038 1.3E-07 61.9 3.7 34 159-192 3-36 (322)
256 3tr0_A Guanylate kinase, GMP k 96.0 0.005 1.7E-07 55.4 4.2 33 158-192 6-38 (205)
257 2xxa_A Signal recognition part 96.0 0.043 1.5E-06 56.4 11.7 38 157-194 98-139 (433)
258 1w4r_A Thymidine kinase; type 95.9 0.03 1E-06 51.6 9.1 34 159-192 20-56 (195)
259 1sq5_A Pantothenate kinase; P- 95.9 0.0076 2.6E-07 58.9 5.5 38 147-184 68-105 (308)
260 3e70_C DPA, signal recognition 95.8 0.051 1.7E-06 53.9 11.3 27 157-183 127-153 (328)
261 1tf7_A KAIC; homohexamer, hexa 95.8 0.051 1.7E-06 57.0 11.7 38 155-192 35-76 (525)
262 2ius_A DNA translocase FTSK; n 95.8 0.062 2.1E-06 56.5 12.2 73 223-318 297-374 (512)
263 1odf_A YGR205W, hypothetical 3 95.7 0.013 4.5E-07 57.1 6.4 30 155-184 27-56 (290)
264 1w36_D RECD, exodeoxyribonucle 95.7 0.026 8.9E-07 60.5 9.0 24 160-183 165-188 (608)
265 3eph_A TRNA isopentenyltransfe 95.7 0.0067 2.3E-07 62.0 4.2 33 159-191 2-34 (409)
266 1ls1_A Signal recognition part 95.7 0.033 1.1E-06 54.2 9.0 35 158-192 97-134 (295)
267 4eaq_A DTMP kinase, thymidylat 95.7 0.0096 3.3E-07 55.7 4.9 34 156-189 23-58 (229)
268 3hdt_A Putative kinase; struct 95.6 0.0087 3E-07 56.1 4.6 31 159-189 14-44 (223)
269 2pt7_A CAG-ALFA; ATPase, prote 95.6 0.01 3.5E-07 58.8 5.3 70 160-233 172-251 (330)
270 3a00_A Guanylate kinase, GMP k 95.6 0.0064 2.2E-07 54.6 3.4 26 159-184 1-26 (186)
271 3lxw_A GTPase IMAP family memb 95.6 0.012 4.2E-07 55.4 5.4 25 158-182 20-44 (247)
272 1m8p_A Sulfate adenylyltransfe 95.6 0.032 1.1E-06 59.5 9.1 39 157-195 394-436 (573)
273 2gks_A Bifunctional SAT/APS ki 95.5 0.021 7.2E-07 60.5 7.5 60 135-195 349-411 (546)
274 3b6e_A Interferon-induced heli 95.5 0.02 6.9E-07 51.4 6.4 24 160-183 49-72 (216)
275 1sky_E F1-ATPase, F1-ATP synth 95.5 0.01 3.6E-07 61.7 4.8 24 160-183 152-175 (473)
276 2jeo_A Uridine-cytidine kinase 95.4 0.01 3.5E-07 55.6 4.3 31 156-186 22-52 (245)
277 1zu4_A FTSY; GTPase, signal re 95.4 0.059 2E-06 53.1 10.0 37 156-192 102-141 (320)
278 1tf7_A KAIC; homohexamer, hexa 95.4 0.059 2E-06 56.5 10.5 38 155-192 277-317 (525)
279 1gtv_A TMK, thymidylate kinase 95.4 0.005 1.7E-07 55.8 2.0 24 161-184 2-25 (214)
280 1a7j_A Phosphoribulokinase; tr 95.4 0.0063 2.2E-07 59.2 2.8 39 158-196 4-45 (290)
281 1j8m_F SRP54, signal recogniti 95.4 0.041 1.4E-06 53.7 8.5 35 159-193 98-135 (297)
282 4b3f_X DNA-binding protein smu 95.4 0.027 9.2E-07 60.6 7.9 33 161-193 207-242 (646)
283 2j9r_A Thymidine kinase; TK1, 95.4 0.043 1.5E-06 51.3 8.2 32 160-191 29-63 (214)
284 1bif_A 6-phosphofructo-2-kinas 95.4 0.022 7.6E-07 58.9 6.8 29 157-185 37-65 (469)
285 2ocp_A DGK, deoxyguanosine kin 95.3 0.012 4.2E-07 54.9 4.3 26 159-184 2-27 (241)
286 1g8f_A Sulfate adenylyltransfe 95.3 0.013 4.6E-07 61.6 4.9 53 132-185 369-421 (511)
287 1lvg_A Guanylate kinase, GMP k 95.2 0.0099 3.4E-07 54.1 3.3 26 159-184 4-29 (198)
288 3p32_A Probable GTPase RV1496/ 95.1 0.071 2.4E-06 53.0 9.6 35 157-191 77-114 (355)
289 2qmh_A HPR kinase/phosphorylas 95.1 0.0087 3E-07 55.6 2.5 31 159-190 34-64 (205)
290 1znw_A Guanylate kinase, GMP k 95.1 0.014 4.7E-07 53.2 3.9 29 156-184 17-45 (207)
291 2yhs_A FTSY, cell division pro 95.1 0.17 5.8E-06 53.0 12.5 28 156-183 290-317 (503)
292 2xtp_A GTPase IMAP family memb 95.0 0.1 3.4E-06 48.9 9.8 25 158-182 21-45 (260)
293 3thx_B DNA mismatch repair pro 95.0 0.079 2.7E-06 59.5 10.3 26 157-182 671-696 (918)
294 3thx_A DNA mismatch repair pro 95.0 0.091 3.1E-06 59.1 10.8 23 159-181 662-684 (934)
295 3tmk_A Thymidylate kinase; pho 95.0 0.046 1.6E-06 50.9 7.2 33 158-190 4-36 (216)
296 1z6g_A Guanylate kinase; struc 95.0 0.013 4.5E-07 54.2 3.4 28 156-183 20-47 (218)
297 1c9k_A COBU, adenosylcobinamid 95.0 0.014 4.9E-07 53.0 3.6 32 162-194 2-33 (180)
298 1p5z_B DCK, deoxycytidine kina 95.0 0.0062 2.1E-07 57.8 1.1 29 156-184 21-49 (263)
299 3v9p_A DTMP kinase, thymidylat 94.9 0.036 1.2E-06 52.1 6.4 34 158-191 24-64 (227)
300 3b9q_A Chloroplast SRP recepto 94.9 0.037 1.2E-06 54.2 6.6 28 156-183 97-124 (302)
301 1wb9_A DNA mismatch repair pro 94.9 0.12 4.2E-06 57.2 11.5 25 158-182 606-630 (800)
302 3aez_A Pantothenate kinase; tr 94.8 0.02 6.8E-07 56.3 4.4 29 156-184 87-115 (312)
303 2oap_1 GSPE-2, type II secreti 94.7 0.021 7.3E-07 60.0 4.4 70 159-232 260-343 (511)
304 1p9r_A General secretion pathw 94.6 0.034 1.2E-06 57.0 5.8 25 160-184 168-192 (418)
305 1htw_A HI0065; nucleotide-bind 94.6 0.026 8.7E-07 50.0 4.2 28 156-183 30-57 (158)
306 2og2_A Putative signal recogni 94.5 0.052 1.8E-06 54.5 6.7 28 156-183 154-181 (359)
307 3lnc_A Guanylate kinase, GMP k 94.5 0.012 3.9E-07 54.6 1.7 27 157-183 25-52 (231)
308 3upu_A ATP-dependent DNA helic 94.5 0.021 7E-07 58.9 3.7 23 161-183 47-69 (459)
309 2v9p_A Replication protein E1; 94.5 0.025 8.6E-07 55.6 4.2 29 155-183 122-150 (305)
310 1rj9_A FTSY, signal recognitio 94.4 0.03 1E-06 54.9 4.6 26 158-183 101-126 (304)
311 4i1u_A Dephospho-COA kinase; s 94.4 0.024 8.1E-07 52.8 3.6 31 160-191 10-40 (210)
312 2ffh_A Protein (FFH); SRP54, s 94.4 0.12 4.3E-06 52.9 9.3 35 158-192 97-134 (425)
313 1s96_A Guanylate kinase, GMP k 94.2 0.032 1.1E-06 51.9 4.0 28 157-184 14-41 (219)
314 2i3b_A HCR-ntpase, human cance 94.2 0.028 9.6E-07 51.2 3.5 23 161-183 3-25 (189)
315 2px0_A Flagellar biosynthesis 94.2 0.075 2.5E-06 51.8 6.8 37 157-193 103-143 (296)
316 4edh_A DTMP kinase, thymidylat 94.2 0.034 1.1E-06 51.6 4.1 33 159-191 6-41 (213)
317 1xjc_A MOBB protein homolog; s 94.1 0.036 1.2E-06 49.8 3.9 33 159-191 4-39 (169)
318 3k53_A Ferrous iron transport 94.0 0.088 3E-06 49.9 6.7 23 160-182 4-26 (271)
319 1vt4_I APAF-1 related killer D 93.9 0.14 4.8E-06 58.4 9.1 24 159-182 150-173 (1221)
320 4f4c_A Multidrug resistance pr 93.9 0.092 3.1E-06 61.3 7.9 29 156-184 441-469 (1321)
321 1np6_A Molybdopterin-guanine d 93.8 0.044 1.5E-06 49.2 4.1 25 159-183 6-30 (174)
322 3lv8_A DTMP kinase, thymidylat 93.8 0.043 1.5E-06 51.8 4.1 26 158-183 26-51 (236)
323 3l0o_A Transcription terminati 93.7 0.18 6.3E-06 51.4 8.8 76 160-235 176-275 (427)
324 3kta_A Chromosome segregation 93.6 0.048 1.6E-06 48.1 3.9 25 160-184 27-51 (182)
325 2v3c_C SRP54, signal recogniti 93.6 0.066 2.3E-06 55.0 5.5 36 158-193 98-136 (432)
326 2gk6_A Regulator of nonsense t 93.6 0.04 1.4E-06 59.2 3.9 23 161-183 197-219 (624)
327 2wjg_A FEOB, ferrous iron tran 93.6 0.17 5.7E-06 44.2 7.3 24 159-182 7-30 (188)
328 1ewq_A DNA mismatch repair pro 93.5 0.16 5.3E-06 56.1 8.5 24 159-182 576-599 (765)
329 2p67_A LAO/AO transport system 93.5 0.23 8E-06 49.0 9.1 27 157-183 54-80 (341)
330 2fwr_A DNA repair protein RAD2 93.4 0.14 4.9E-06 52.1 7.5 33 161-193 110-142 (472)
331 4hlc_A DTMP kinase, thymidylat 93.3 0.12 4.2E-06 47.4 6.3 31 161-191 4-36 (205)
332 1nrj_B SR-beta, signal recogni 93.3 0.058 2E-06 48.6 4.0 26 158-183 11-36 (218)
333 3ld9_A DTMP kinase, thymidylat 93.3 0.062 2.1E-06 50.4 4.2 33 157-189 19-55 (223)
334 1vec_A ATP-dependent RNA helic 93.3 0.17 6E-06 45.1 7.1 18 160-177 41-58 (206)
335 1z2a_A RAS-related protein RAB 93.1 0.054 1.8E-06 46.1 3.3 24 159-182 5-28 (168)
336 3ch4_B Pmkase, phosphomevalona 93.1 0.053 1.8E-06 50.2 3.4 30 156-185 8-37 (202)
337 3cr8_A Sulfate adenylyltranfer 93.1 0.037 1.3E-06 58.7 2.7 39 157-195 367-409 (552)
338 3a1s_A Iron(II) transport prot 93.1 0.13 4.5E-06 48.7 6.2 24 159-182 5-28 (258)
339 2onk_A Molybdate/tungstate ABC 93.0 0.05 1.7E-06 51.3 3.2 27 156-183 22-48 (240)
340 4tmk_A Protein (thymidylate ki 93.0 0.07 2.4E-06 49.5 4.1 25 159-183 3-27 (213)
341 3bc1_A RAS-related protein RAB 92.9 0.059 2E-06 47.0 3.4 26 157-182 9-34 (195)
342 3tqf_A HPR(Ser) kinase; transf 92.9 0.061 2.1E-06 48.8 3.5 27 159-186 16-42 (181)
343 2cbz_A Multidrug resistance-as 92.9 0.048 1.6E-06 51.3 2.9 28 156-183 28-55 (237)
344 2f9l_A RAB11B, member RAS onco 92.9 0.058 2E-06 48.2 3.3 23 160-182 6-28 (199)
345 1yrb_A ATP(GTP)binding protein 92.9 0.13 4.3E-06 48.0 5.7 36 157-192 12-49 (262)
346 3i8s_A Ferrous iron transport 92.9 0.24 8.1E-06 47.3 7.8 24 159-182 3-26 (274)
347 1oix_A RAS-related protein RAB 92.9 0.058 2E-06 48.1 3.2 24 160-183 30-53 (191)
348 2ged_A SR-beta, signal recogni 92.9 0.076 2.6E-06 46.7 4.0 26 157-182 46-71 (193)
349 2pcj_A ABC transporter, lipopr 92.8 0.042 1.4E-06 51.2 2.4 27 157-183 28-54 (224)
350 2o8b_B DNA mismatch repair pro 92.8 0.46 1.6E-05 54.0 11.3 23 159-181 789-811 (1022)
351 3tif_A Uncharacterized ABC tra 92.8 0.051 1.7E-06 51.0 2.9 27 157-183 29-55 (235)
352 4dcu_A GTP-binding protein ENG 92.8 0.14 4.7E-06 52.6 6.4 23 160-182 24-46 (456)
353 3iby_A Ferrous iron transport 92.8 0.18 6E-06 47.8 6.6 22 161-182 3-24 (256)
354 1kao_A RAP2A; GTP-binding prot 92.7 0.067 2.3E-06 45.2 3.3 24 159-182 3-26 (167)
355 2dyk_A GTP-binding protein; GT 92.7 0.067 2.3E-06 45.2 3.3 22 161-182 3-24 (161)
356 1u8z_A RAS-related protein RAL 92.6 0.072 2.5E-06 45.1 3.3 24 159-182 4-27 (168)
357 1upt_A ARL1, ADP-ribosylation 92.6 0.092 3.1E-06 44.8 4.0 26 157-182 5-30 (171)
358 1b0u_A Histidine permease; ABC 92.5 0.057 2E-06 51.6 2.9 28 157-184 30-57 (262)
359 2ce2_X GTPase HRAS; signaling 92.5 0.073 2.5E-06 44.8 3.3 23 160-182 4-26 (166)
360 2f1r_A Molybdopterin-guanine d 92.5 0.051 1.8E-06 48.6 2.3 25 160-184 3-27 (171)
361 3b85_A Phosphate starvation-in 92.5 0.053 1.8E-06 50.1 2.5 24 159-182 22-45 (208)
362 1mv5_A LMRA, multidrug resista 92.4 0.061 2.1E-06 50.7 2.9 28 156-183 25-52 (243)
363 2wjy_A Regulator of nonsense t 92.4 0.073 2.5E-06 58.9 3.9 24 160-183 372-395 (800)
364 1ky3_A GTP-binding protein YPT 92.4 0.077 2.6E-06 45.7 3.3 25 158-182 7-31 (182)
365 2zu0_C Probable ATP-dependent 92.4 0.073 2.5E-06 50.9 3.4 27 156-182 43-69 (267)
366 1lw7_A Transcriptional regulat 92.4 0.085 2.9E-06 52.5 4.0 28 159-186 170-197 (365)
367 2nzj_A GTP-binding protein REM 92.3 0.079 2.7E-06 45.4 3.3 24 159-182 4-27 (175)
368 3fvq_A Fe(3+) IONS import ATP- 92.3 0.073 2.5E-06 53.5 3.4 27 157-183 28-54 (359)
369 2lkc_A Translation initiation 92.3 0.1 3.5E-06 45.0 3.9 26 157-182 6-31 (178)
370 2wsm_A Hydrogenase expression/ 92.2 0.097 3.3E-06 47.3 3.9 26 159-184 30-55 (221)
371 1ek0_A Protein (GTP-binding pr 92.2 0.071 2.4E-06 45.3 2.8 23 160-182 4-26 (170)
372 3sop_A Neuronal-specific septi 92.2 0.081 2.8E-06 50.8 3.4 23 161-183 4-26 (270)
373 3b1v_A Ferrous iron uptake tra 92.2 0.24 8.1E-06 47.5 6.7 23 160-182 4-26 (272)
374 2olj_A Amino acid ABC transpor 92.2 0.068 2.3E-06 51.2 2.9 28 156-183 47-74 (263)
375 2ghi_A Transport protein; mult 92.2 0.069 2.3E-06 50.9 2.9 28 156-183 43-70 (260)
376 2d2e_A SUFC protein; ABC-ATPas 92.1 0.071 2.4E-06 50.4 2.9 26 157-182 27-52 (250)
377 2ixe_A Antigen peptide transpo 92.1 0.07 2.4E-06 51.2 2.9 28 156-183 42-69 (271)
378 2wji_A Ferrous iron transport 92.1 0.083 2.8E-06 45.6 3.1 23 160-182 4-26 (165)
379 3clv_A RAB5 protein, putative; 92.1 0.11 3.6E-06 45.5 3.9 25 158-182 6-30 (208)
380 1g6h_A High-affinity branched- 92.1 0.061 2.1E-06 51.1 2.4 27 157-183 31-57 (257)
381 2zej_A Dardarin, leucine-rich 92.0 0.069 2.4E-06 47.0 2.6 21 161-181 4-24 (184)
382 1g16_A RAS-related protein SEC 92.0 0.091 3.1E-06 44.7 3.3 23 160-182 4-26 (170)
383 1jwy_B Dynamin A GTPase domain 92.0 1.3 4.4E-05 42.3 11.9 23 160-182 25-47 (315)
384 2it1_A 362AA long hypothetical 92.0 0.083 2.8E-06 53.1 3.4 27 157-183 27-53 (362)
385 2yyz_A Sugar ABC transporter, 92.0 0.083 2.9E-06 53.0 3.4 27 157-183 27-53 (359)
386 2ff7_A Alpha-hemolysin translo 92.0 0.063 2.1E-06 50.8 2.4 27 157-183 33-59 (247)
387 1z0j_A RAB-22, RAS-related pro 92.0 0.093 3.2E-06 44.7 3.3 24 159-182 6-29 (170)
388 1wms_A RAB-9, RAB9, RAS-relate 91.9 0.092 3.2E-06 45.2 3.3 24 159-182 7-30 (177)
389 1ji0_A ABC transporter; ATP bi 91.9 0.065 2.2E-06 50.4 2.4 26 158-183 31-56 (240)
390 1c1y_A RAS-related protein RAP 91.9 0.098 3.4E-06 44.4 3.3 23 160-182 4-26 (167)
391 2hf9_A Probable hydrogenase ni 91.9 0.12 4.1E-06 46.9 4.1 26 159-184 38-63 (226)
392 1z08_A RAS-related protein RAB 91.9 0.096 3.3E-06 44.7 3.3 24 159-182 6-29 (170)
393 2pze_A Cystic fibrosis transme 91.9 0.066 2.3E-06 50.0 2.4 27 157-183 32-58 (229)
394 3rlf_A Maltose/maltodextrin im 91.9 0.087 3E-06 53.3 3.4 27 157-183 27-53 (381)
395 2qm8_A GTPase/ATPase; G protei 91.8 0.12 4.1E-06 51.2 4.3 28 156-183 52-79 (337)
396 1v43_A Sugar-binding transport 91.8 0.088 3E-06 53.1 3.4 27 157-183 35-61 (372)
397 2vp4_A Deoxynucleoside kinase; 91.8 0.067 2.3E-06 49.5 2.4 31 157-188 18-48 (230)
398 1r2q_A RAS-related protein RAB 91.8 0.1 3.4E-06 44.4 3.3 24 159-182 6-29 (170)
399 1sgw_A Putative ABC transporte 91.8 0.073 2.5E-06 49.4 2.6 25 159-183 35-59 (214)
400 2yz2_A Putative ABC transporte 91.8 0.08 2.7E-06 50.6 2.9 27 157-183 31-57 (266)
401 1vpl_A ABC transporter, ATP-bi 91.8 0.08 2.7E-06 50.5 2.9 27 157-183 39-65 (256)
402 3d31_A Sulfate/molybdate ABC t 91.7 0.074 2.5E-06 53.2 2.7 27 157-183 24-50 (348)
403 3gfo_A Cobalt import ATP-bindi 91.7 0.069 2.3E-06 51.5 2.4 27 157-183 32-58 (275)
404 2atv_A RERG, RAS-like estrogen 91.7 0.12 4.1E-06 45.8 3.8 25 158-182 27-51 (196)
405 1r8s_A ADP-ribosylation factor 91.7 0.11 3.8E-06 44.1 3.5 22 161-182 2-23 (164)
406 3hjn_A DTMP kinase, thymidylat 91.7 0.18 6.2E-06 45.9 5.1 32 162-193 3-37 (197)
407 2hxs_A RAB-26, RAS-related pro 91.6 0.12 4.2E-06 44.4 3.7 25 158-182 5-29 (178)
408 3q85_A GTP-binding protein REM 91.6 0.1 3.4E-06 44.6 3.1 21 161-181 4-24 (169)
409 4g1u_C Hemin import ATP-bindin 91.6 0.072 2.5E-06 51.0 2.4 27 157-183 35-61 (266)
410 2erx_A GTP-binding protein DI- 91.6 0.1 3.4E-06 44.4 3.1 23 160-182 4-26 (172)
411 1z47_A CYSA, putative ABC-tran 91.6 0.084 2.9E-06 52.9 2.9 26 158-183 40-65 (355)
412 3e2i_A Thymidine kinase; Zn-bi 91.6 0.18 6.3E-06 47.1 5.0 33 159-191 28-63 (219)
413 4f4c_A Multidrug resistance pr 91.6 0.092 3.1E-06 61.3 3.6 27 156-182 1102-1128(1321)
414 3q72_A GTP-binding protein RAD 91.6 0.096 3.3E-06 44.5 2.9 21 161-181 4-24 (166)
415 1m7b_A RND3/RHOE small GTP-bin 91.6 0.11 3.7E-06 45.6 3.3 25 158-182 6-30 (184)
416 2y8e_A RAB-protein 6, GH09086P 91.5 0.11 3.7E-06 44.6 3.3 23 160-182 15-37 (179)
417 2xzl_A ATP-dependent helicase 91.5 0.11 3.7E-06 57.6 3.9 33 161-193 377-413 (802)
418 2qi9_C Vitamin B12 import ATP- 91.5 0.076 2.6E-06 50.4 2.4 26 158-183 25-50 (249)
419 1dek_A Deoxynucleoside monopho 91.5 0.096 3.3E-06 49.6 3.1 27 161-187 3-29 (241)
420 1g29_1 MALK, maltose transport 91.4 0.088 3E-06 53.1 2.9 26 158-183 28-53 (372)
421 2a9k_A RAS-related protein RAL 91.4 0.12 4E-06 44.8 3.3 24 159-182 18-41 (187)
422 1svi_A GTP-binding protein YSX 91.4 0.13 4.5E-06 45.1 3.7 25 158-182 22-46 (195)
423 2fn4_A P23, RAS-related protei 91.4 0.12 4.1E-06 44.4 3.4 24 159-182 9-32 (181)
424 2ihy_A ABC transporter, ATP-bi 91.4 0.079 2.7E-06 51.2 2.4 27 157-183 45-71 (279)
425 1z0f_A RAB14, member RAS oncog 91.4 0.12 4E-06 44.4 3.3 24 159-182 15-38 (179)
426 1f2t_A RAD50 ABC-ATPase; DNA d 91.4 0.12 4.3E-06 44.8 3.4 25 159-183 23-47 (149)
427 2hjg_A GTP-binding protein ENG 91.3 0.25 8.4E-06 50.4 6.2 22 161-182 5-26 (436)
428 2nq2_C Hypothetical ABC transp 91.3 0.079 2.7E-06 50.3 2.3 27 157-183 29-55 (253)
429 1pui_A ENGB, probable GTP-bind 91.3 0.062 2.1E-06 48.1 1.5 26 157-182 24-49 (210)
430 2x77_A ADP-ribosylation factor 91.3 0.11 3.8E-06 45.5 3.2 25 157-181 20-44 (189)
431 4dsu_A GTPase KRAS, isoform 2B 91.3 0.1 3.6E-06 45.2 2.9 24 159-182 4-27 (189)
432 3bwd_D RAC-like GTP-binding pr 91.3 0.15 5E-06 44.1 3.9 25 158-182 7-31 (182)
433 2gj8_A MNME, tRNA modification 91.3 0.13 4.4E-06 45.0 3.5 24 159-182 4-27 (172)
434 3gd7_A Fusion complex of cysti 91.2 0.11 3.9E-06 52.6 3.4 26 157-182 45-70 (390)
435 1m2o_B GTP-binding protein SAR 91.2 0.13 4.6E-06 45.5 3.5 24 159-182 23-46 (190)
436 3con_A GTPase NRAS; structural 91.2 0.12 4.2E-06 45.2 3.3 24 159-182 21-44 (190)
437 2bme_A RAB4A, RAS-related prot 91.2 0.12 4.2E-06 44.8 3.3 25 158-182 9-33 (186)
438 1oxx_K GLCV, glucose, ABC tran 91.1 0.075 2.6E-06 53.2 2.0 27 157-183 29-55 (353)
439 2oil_A CATX-8, RAS-related pro 91.1 0.13 4.4E-06 45.3 3.3 26 157-182 23-48 (193)
440 2xau_A PRE-mRNA-splicing facto 91.1 0.21 7.1E-06 55.1 5.7 23 160-182 110-132 (773)
441 2efe_B Small GTP-binding prote 91.1 0.13 4.4E-06 44.4 3.3 24 159-182 12-35 (181)
442 3t34_A Dynamin-related protein 91.0 1.4 4.9E-05 43.3 11.3 25 157-182 33-57 (360)
443 1moz_A ARL1, ADP-ribosylation 91.0 0.11 3.6E-06 45.1 2.7 25 157-181 16-40 (183)
444 3tw8_B RAS-related protein RAB 91.0 0.12 4E-06 44.5 2.9 25 158-182 8-32 (181)
445 3tkl_A RAS-related protein RAB 91.0 0.13 4.6E-06 45.0 3.4 26 157-182 14-39 (196)
446 2gf0_A GTP-binding protein DI- 91.0 0.17 5.9E-06 44.4 4.1 26 157-182 6-31 (199)
447 2p5s_A RAS and EF-hand domain 91.0 0.15 5.1E-06 45.3 3.7 26 157-182 26-51 (199)
448 2g6b_A RAS-related protein RAB 90.9 0.14 4.8E-06 44.2 3.4 26 157-182 8-33 (180)
449 2orv_A Thymidine kinase; TP4A 90.9 0.75 2.6E-05 43.4 8.6 33 159-191 19-54 (234)
450 2gza_A Type IV secretion syste 90.8 0.11 3.9E-06 51.8 3.0 25 160-184 176-200 (361)
451 3kkq_A RAS-related protein M-R 90.8 0.17 5.8E-06 43.9 3.8 24 159-182 18-41 (183)
452 1mh1_A RAC1; GTP-binding, GTPa 90.7 0.14 4.9E-06 44.2 3.3 23 160-182 6-28 (186)
453 1ksh_A ARF-like protein 2; sma 90.7 0.16 5.4E-06 44.3 3.5 26 157-182 16-41 (186)
454 2cxx_A Probable GTP-binding pr 90.7 0.13 4.6E-06 44.7 3.0 22 161-182 3-24 (190)
455 2pjz_A Hypothetical protein ST 90.7 0.12 4E-06 49.5 2.8 25 159-183 30-54 (263)
456 3t1o_A Gliding protein MGLA; G 90.6 0.15 5.1E-06 44.5 3.3 24 159-182 14-37 (198)
457 2bbs_A Cystic fibrosis transme 90.6 0.12 4.1E-06 50.2 2.9 28 156-183 61-88 (290)
458 3dz8_A RAS-related protein RAB 90.6 0.16 5.5E-06 44.7 3.4 25 159-183 23-47 (191)
459 2gf9_A RAS-related protein RAB 90.5 0.15 5.2E-06 44.7 3.3 24 159-182 22-45 (189)
460 1z06_A RAS-related protein RAB 90.5 0.15 5.3E-06 44.7 3.3 25 158-182 19-43 (189)
461 1zj6_A ADP-ribosylation factor 90.5 0.18 6.2E-06 44.1 3.7 26 157-182 14-39 (187)
462 2fg5_A RAB-22B, RAS-related pr 90.4 0.14 4.8E-06 45.3 2.9 26 157-182 21-46 (192)
463 2obl_A ESCN; ATPase, hydrolase 90.4 0.22 7.4E-06 49.7 4.6 30 157-186 69-98 (347)
464 1zd9_A ADP-ribosylation factor 90.4 0.14 4.9E-06 45.0 3.0 26 157-182 20-45 (188)
465 1vg8_A RAS-related protein RAB 90.4 0.16 5.5E-06 45.0 3.3 25 158-182 7-31 (207)
466 1x3s_A RAS-related protein RAB 90.3 0.16 5.6E-06 44.3 3.3 24 159-182 15-38 (195)
467 3t5g_A GTP-binding protein RHE 90.3 0.16 5.6E-06 43.9 3.3 24 159-182 6-29 (181)
468 2npi_A Protein CLP1; CLP1-PCF1 90.3 0.16 5.3E-06 52.7 3.5 25 159-183 138-162 (460)
469 3c5c_A RAS-like protein 12; GD 90.3 0.16 5.6E-06 44.7 3.3 24 159-182 21-44 (187)
470 2dpy_A FLII, flagellum-specifi 90.3 0.26 8.8E-06 50.7 5.2 31 156-186 154-184 (438)
471 3pqc_A Probable GTP-binding pr 90.2 0.25 8.6E-06 43.0 4.4 23 160-182 24-46 (195)
472 2fh5_B SR-beta, signal recogni 90.2 0.19 6.3E-06 45.1 3.6 24 159-182 7-30 (214)
473 3cph_A RAS-related protein SEC 90.1 0.2 6.7E-06 44.7 3.7 25 158-182 19-43 (213)
474 4ag6_A VIRB4 ATPase, type IV s 90.1 0.29 1E-05 48.9 5.3 34 159-192 35-71 (392)
475 1fzq_A ADP-ribosylation factor 90.1 0.19 6.4E-06 44.1 3.5 26 157-182 14-39 (181)
476 2bov_A RAla, RAS-related prote 90.1 0.19 6.3E-06 44.5 3.5 24 159-182 14-37 (206)
477 1f6b_A SAR1; gtpases, N-termin 90.1 0.17 5.9E-06 45.2 3.3 23 159-181 25-47 (198)
478 3oes_A GTPase rhebl1; small GT 90.1 0.17 6E-06 45.0 3.3 25 158-182 23-47 (201)
479 3ihw_A Centg3; RAS, centaurin, 90.1 0.18 6E-06 44.6 3.3 24 159-182 20-43 (184)
480 2iwr_A Centaurin gamma 1; ANK 90.0 0.13 4.6E-06 44.3 2.4 24 159-182 7-30 (178)
481 4gzl_A RAS-related C3 botulinu 90.0 0.2 6.8E-06 44.9 3.7 26 157-182 28-53 (204)
482 2a5j_A RAS-related protein RAB 90.0 0.18 6.3E-06 44.3 3.3 25 158-182 20-44 (191)
483 3reg_A RHO-like small GTPase; 90.0 0.18 6.2E-06 44.4 3.3 26 157-182 21-46 (194)
484 3tui_C Methionine import ATP-b 89.9 0.17 5.9E-06 50.9 3.4 27 157-183 52-78 (366)
485 3iev_A GTP-binding protein ERA 89.9 0.36 1.2E-05 46.9 5.6 25 158-182 9-33 (308)
486 2b6h_A ADP-ribosylation factor 89.8 0.17 5.7E-06 45.0 3.0 25 157-181 27-51 (192)
487 3nh6_A ATP-binding cassette SU 89.8 0.12 4.1E-06 50.7 2.1 28 156-183 77-104 (306)
488 1zbd_A Rabphilin-3A; G protein 89.8 0.18 6.1E-06 44.7 3.1 24 159-182 8-31 (203)
489 2www_A Methylmalonic aciduria 89.8 0.23 7.7E-06 49.4 4.2 25 159-183 74-98 (349)
490 2bcg_Y Protein YP2, GTP-bindin 89.7 0.19 6.6E-06 44.7 3.3 24 159-182 8-31 (206)
491 2nr8_A Kinesin-like protein KI 89.7 0.32 1.1E-05 48.7 5.2 76 121-215 71-146 (358)
492 3bfv_A CAPA1, CAPB2, membrane 89.6 0.91 3.1E-05 43.2 8.2 37 157-193 80-120 (271)
493 1gwn_A RHO-related GTP-binding 89.6 0.2 6.7E-06 45.3 3.3 25 158-182 27-51 (205)
494 3lxx_A GTPase IMAP family memb 89.5 0.19 6.4E-06 46.4 3.1 25 158-182 28-52 (239)
495 3qks_A DNA double-strand break 89.5 0.22 7.4E-06 45.4 3.4 27 159-185 23-49 (203)
496 2ew1_A RAS-related protein RAB 89.4 0.21 7.2E-06 45.0 3.3 25 158-182 25-49 (201)
497 2h17_A ADP-ribosylation factor 89.3 0.21 7.2E-06 43.5 3.2 25 158-182 20-44 (181)
498 2q3h_A RAS homolog gene family 89.2 0.24 8.3E-06 43.8 3.5 25 158-182 19-43 (201)
499 2atx_A Small GTP binding prote 89.2 0.22 7.7E-06 43.7 3.2 23 160-182 19-41 (194)
500 2fu5_C RAS-related protein RAB 89.0 0.13 4.4E-06 44.7 1.5 24 159-182 8-31 (183)
No 1
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=100.00 E-value=1.3e-51 Score=407.51 Aligned_cols=293 Identities=90% Similarity=1.437 Sum_probs=253.8
Q ss_pred ccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCCh
Q 013704 124 SLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 203 (438)
Q Consensus 124 ~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~ 203 (438)
+|+++.+++|++|+|+++++.+++++++..++.++|+++|||||||||||++|++||++++.+++.++++++.++|.|++
T Consensus 1 ~~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~ 80 (293)
T 3t15_A 1 NLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEP 80 (293)
T ss_dssp CCCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HH
T ss_pred CcccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEE
Q 013704 204 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283 (438)
Q Consensus 204 ~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~ 283 (438)
+..++++|+.|.+.++...||||||||||++++++.+..+.+..++.+.+.|++++|+++.+++++.+......+++||+
T Consensus 81 ~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ 160 (293)
T 3t15_A 81 AKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIV 160 (293)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEE
Confidence 99999999999877778999999999999999877655666777889999999999999999999887767788999999
Q ss_pred ecCCCCCCCccccCCCcceEEEecCCHHHHHHHHHhhhCCCCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHHHh
Q 013704 284 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 363 (438)
Q Consensus 284 TTN~~~~Ld~aLlR~GRfd~~i~lP~~e~R~~Il~~~l~~~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~i~ 363 (438)
|||+++.||++++|+|||++.+++|+.++|.+|++.++...+++.+.++.++++|+|++|+++++++++.+++++++|+.
T Consensus 161 ttN~~~~ld~al~R~~R~d~~i~~P~~~~r~~Il~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~~ 240 (293)
T 3t15_A 161 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVS 240 (293)
T ss_dssp ECSSCCC--CHHHHHHHEEEEEECCCHHHHHHHHHHHHGGGCCCHHHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCcccCCHHHhCCCCCceeEeCcCHHHHHHHHHHhccCCCCCHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHhcCCCCCCCCCCccccHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 013704 364 EVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 416 (438)
Q Consensus 364 ~~~~e~i~~~~~~~~~~~p~f~~~~~~~~~ll~~~~~lv~eq~~v~~~~l~~~ 416 (438)
+.|.+++.+++++...++|.|.+|++++++|+++|+.++.||++++.++|+++
T Consensus 241 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~eq~~~~~~~l~~~ 293 (293)
T 3t15_A 241 GTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADK 293 (293)
T ss_dssp HTCSTTCHHHHTSCSSCSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhCHHHHHHHHHcCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 99999999999999999999999999999999999999999999999999873
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-40 Score=338.93 Aligned_cols=190 Identities=18% Similarity=0.291 Sum_probs=164.5
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~ 233 (438)
.|+++|+|+|||||||||||++|+++|++++.+|+.++++++.++|+|+++++++.+|..|+ ..+||||||||+|+
T Consensus 177 ~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar----~~aP~IIFiDEiDa 252 (405)
T 4b4t_J 177 LGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDS 252 (405)
T ss_dssp HTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHH----HTCSEEEEEESSSC
T ss_pred CCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHH----HhCCceEeeecchh
Confidence 47899999999999999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred cccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCHH
Q 013704 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 311 (438)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e 311 (438)
++++|..... ..+..+..++.+++. +|||+ ....+|+||+|||+|+.||+||+||||||+.++ +|+.+
T Consensus 253 i~~~R~~~~~--~~~~~~~~~l~~lL~-----~lDg~---~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~ 322 (405)
T 4b4t_J 253 IGSTRVEGSG--GGDSEVQRTMLELLN-----QLDGF---ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVA 322 (405)
T ss_dssp CTTSCSCSSS--GGGGHHHHHHHHHHH-----HHHTT---TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHH
T ss_pred hccCCCCCCC--CCcHHHHHHHHHHHH-----hhhcc---CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHH
Confidence 9988753222 122223333333333 56676 567889999999999999999999999999999 59999
Q ss_pred HHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHH
Q 013704 312 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360 (438)
Q Consensus 312 ~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~ 360 (438)
+|.+||+.++++ .+++++.+++.+++|+|+||. ++|..+...++|+
T Consensus 323 ~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~---~l~~eA~~~Air~ 372 (405)
T 4b4t_J 323 ARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVK---GVCTEAGMYALRE 372 (405)
T ss_dssp HHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHH---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHH---HHHHHHHHHHHHc
Confidence 999999988875 467888999999999999999 8999988888765
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-39 Score=332.93 Aligned_cols=190 Identities=22% Similarity=0.332 Sum_probs=163.6
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~ 233 (438)
.++++|+|+|||||||||||++|++||++++++|+.++++++.++|+|+++++++.+|..|+ ..+||||||||+|+
T Consensus 211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar----~~aP~IIfiDEiDa 286 (437)
T 4b4t_I 211 MGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAG----ENAPSIVFIDEIDA 286 (437)
T ss_dssp HTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHH----HTCSEEEEEEEESS
T ss_pred CCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHH----hcCCcEEEEehhhh
Confidence 47899999999999999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred cccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCHH
Q 013704 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 311 (438)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e 311 (438)
++++|....... ...+..++.++++ ++||+ ....+|+||+|||+++.||+||+||||||+.|+ +|+.+
T Consensus 287 i~~~R~~~~~~~--~~~~~~~l~~LL~-----~lDg~---~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~ 356 (437)
T 4b4t_I 287 IGTKRYDSNSGG--EREIQRTMLELLN-----QLDGF---DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLS 356 (437)
T ss_dssp SSCCCSCSSCSS--CCHHHHHHHHHHH-----HHHHC---CCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHH
T ss_pred hcccCCCCCCCc--cHHHHHHHHHHHH-----HhhCc---CCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHH
Confidence 999875422211 1222233333333 45565 566889999999999999999999999999999 59999
Q ss_pred HHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHH
Q 013704 312 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360 (438)
Q Consensus 312 ~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~ 360 (438)
+|.+||+.++.+ .+++++.++..+++|+|+||. ++|..+...++++
T Consensus 357 ~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~---~l~~eA~~~Air~ 406 (437)
T 4b4t_I 357 TKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQ---AMCTEAGLLALRE 406 (437)
T ss_dssp HHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHH---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHH---HHHHHHHHHHHHc
Confidence 999999988875 467888999999999999999 8899888887765
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.1e-39 Score=333.93 Aligned_cols=191 Identities=22% Similarity=0.344 Sum_probs=166.4
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~ 233 (438)
.|+++|+|+|||||||||||++|++||++++.+|+.++++++.++|+|+++++++.+|..|+ ..+||||||||+|+
T Consensus 210 ~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~----~~aP~IifiDEiDa 285 (434)
T 4b4t_M 210 MGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAK----EKAPTIIFIDELDA 285 (434)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHH----HHCSEEEEEECTHH
T ss_pred CCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHH----hcCCeEEeecchhh
Confidence 47889999999999999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred cccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCHH
Q 013704 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 311 (438)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e 311 (438)
++++|.+.. ....+.+..++..++. +|+|+ ....+|+||+|||+|+.||+||+||||||+.++ +|+.+
T Consensus 286 l~~~R~~~~--~~~~~~~~~~~~~lL~-----~ldg~---~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~ 355 (434)
T 4b4t_M 286 IGTKRFDSE--KSGDREVQRTMLELLN-----QLDGF---SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSED 355 (434)
T ss_dssp HHCCCSSGG--GGTTHHHHHHHHHHHH-----HHTTS---CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHH
T ss_pred hhhccCCCC--CCCchHHHHHHHHHHH-----Hhhcc---CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHH
Confidence 998876422 2223334444444444 67777 556789999999999999999999999999999 59999
Q ss_pred HHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHH
Q 013704 312 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 361 (438)
Q Consensus 312 ~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~ 361 (438)
+|.+||+.++++ .+++++.+++.+++|+|+||. ++|..+...++|+-
T Consensus 356 ~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~---~l~~eA~~~a~r~~ 406 (434)
T 4b4t_M 356 SRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLK---AVTVEAGMIALRNG 406 (434)
T ss_dssp HHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHH---HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHH---HHHHHHHHHHHHcC
Confidence 999999977653 578899999999999999999 89999888888763
No 5
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-39 Score=331.74 Aligned_cols=190 Identities=25% Similarity=0.367 Sum_probs=163.9
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~ 233 (438)
.|+++|+|+|||||||||||++|++||++++++|+.++++++.++|+|++++.++.+|..|+ .++||||||||+|+
T Consensus 210 ~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~----~~~P~IifiDEiDa 285 (437)
T 4b4t_L 210 VGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAK----EHEPCIIFMDEVDA 285 (437)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHH----HSCSEEEEEECCCS
T ss_pred CCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHH----hcCCceeeeecccc
Confidence 47899999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred cccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCHH
Q 013704 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 311 (438)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e 311 (438)
++++|..... ..++.+..++..++. +|||+ ....+|+||+|||+|+.||+||+||||||+.|+ +|+.+
T Consensus 286 i~~~R~~~~~--~~~~~~~~~l~~lL~-----~lDg~---~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~ 355 (437)
T 4b4t_L 286 IGGRRFSEGT--SADREIQRTLMELLT-----QMDGF---DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEA 355 (437)
T ss_dssp SSCCCSSSCC--SSTTHHHHHHHHHHH-----HHHSS---SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHH
T ss_pred cccccccCCC--CcchHHHHHHHHHHH-----Hhhcc---cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHH
Confidence 9988753222 122233333333333 56676 556889999999999999999999999999999 59999
Q ss_pred HHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHH
Q 013704 312 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360 (438)
Q Consensus 312 ~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~ 360 (438)
+|.+||+.++.+ .+++++.++..+++|+|+||. ++|..+...++++
T Consensus 356 ~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~---~l~~eA~~~air~ 405 (437)
T 4b4t_L 356 GRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIR---NCATEAGFFAIRD 405 (437)
T ss_dssp HHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHH---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHH---HHHHHHHHHHHHc
Confidence 999999987764 567889999999999999999 8888888777765
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-38 Score=331.32 Aligned_cols=190 Identities=21% Similarity=0.313 Sum_probs=165.0
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~ 233 (438)
.|+++|+|+|||||||||||++|++||++++++|+.++++++.++|+|+++++++.+|..|+ ..+||||||||+|+
T Consensus 238 ~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar----~~aP~IIfiDEiDa 313 (467)
T 4b4t_H 238 LGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMAR----TKKACIIFFDEIDA 313 (467)
T ss_dssp HTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHH----HTCSEEEEEECCTT
T ss_pred CCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHH----hcCCceEeeccccc
Confidence 47899999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred cccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCHH
Q 013704 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 311 (438)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e 311 (438)
++.+|..... .....+..++..++. +|+|+ ....+|+||+|||+++.||+||+||||||+.++ +|+.+
T Consensus 314 i~~~R~~~~~--~~~~~~~~~l~~lL~-----~lDg~---~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~ 383 (467)
T 4b4t_H 314 VGGARFDDGA--GGDNEVQRTMLELIT-----QLDGF---DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLE 383 (467)
T ss_dssp TSBCCSSSSC--GGGGHHHHHHHHHHH-----HHHSS---CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHH
T ss_pred ccccccCcCC--CccHHHHHHHHHHHH-----Hhhcc---CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHH
Confidence 9988764222 222233334444444 56666 567889999999999999999999999999999 59999
Q ss_pred HHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHH
Q 013704 312 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360 (438)
Q Consensus 312 ~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~ 360 (438)
+|.+||+.++++ .+++++.|++.+++|+|+||. ++|..+...++|+
T Consensus 384 ~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~---~l~~eAa~~Air~ 433 (467)
T 4b4t_H 384 GRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELR---SVCTEAGMFAIRA 433 (467)
T ss_dssp HHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHH---HHHHHHHHHHHHc
Confidence 999999988875 467888999999999999999 8898888877765
No 7
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-38 Score=325.22 Aligned_cols=205 Identities=21% Similarity=0.270 Sum_probs=170.8
Q ss_pred CCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 013704 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (438)
Q Consensus 153 ~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (438)
..|+++|+|+|||||||||||++|++||++++++|+.++++++.++|+|++++.++.+|..|+ ..+||||||||+|
T Consensus 200 ~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~----~~aP~IifiDEiD 275 (428)
T 4b4t_K 200 QIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLAR----ENAPSIIFIDEVD 275 (428)
T ss_dssp HHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHH----HTCSEEEEEECTH
T ss_pred hCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHH----HcCCCeeechhhh
Confidence 347899999999999999999999999999999999999999999999999999999999998 8999999999999
Q ss_pred ccccCCCCCcc-ccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEec---C
Q 013704 233 AGAGRMGGTTQ-YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA---P 308 (438)
Q Consensus 233 ~l~~~r~~~~~-~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~l---P 308 (438)
++++.|.+... .....+.+...|++ +|||+ ....+|+||+|||+++.||+||+||||||+.|++ |
T Consensus 276 ~i~~~R~~~~~~~~~~~~r~l~~lL~--------~ldg~---~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lP 344 (428)
T 4b4t_K 276 SIATKRFDAQTGSDREVQRILIELLT--------QMDGF---DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLR 344 (428)
T ss_dssp HHHCSCSSSCSCCCCHHHHHHHHHHH--------HHHHS---CSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSC
T ss_pred hhhccccCCCCCCChHHHHHHHHHHH--------HhhCC---CCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCC
Confidence 99988753222 12222333344444 45566 4567899999999999999999999999999874 7
Q ss_pred CHHHHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHH---HhHHhHHHHHHHHh
Q 013704 309 TREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW---ISEVGIERIGKRLV 375 (438)
Q Consensus 309 ~~e~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~---i~~~~~e~i~~~~~ 375 (438)
+.++|..||+.++.+ .+++++.++..+++|+|+||. ++|..+...++|+- +...+++....+.+
T Consensus 345 d~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~---~l~~eA~~~a~r~~~~~i~~~d~~~A~~~~~ 415 (428)
T 4b4t_K 345 DRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIA---AIMQEAGLRAVRKNRYVILQSDLEEAYATQV 415 (428)
T ss_dssp CHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHH---HHHHHHHHHHHHTTCSSBCHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHH---HHHHHHHHHHHHCCCCCCCHHHHHHHHHHhh
Confidence 999999999988765 467888999999999999999 89999888888763 33445555555444
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.1e-37 Score=341.59 Aligned_cols=252 Identities=20% Similarity=0.308 Sum_probs=150.3
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~ 233 (438)
.+.++|+|+|||||||||||++|+++|++++.+|+.++++++.++|+|+++++++++|+.|+ ..+||||||||+|+
T Consensus 506 ~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar----~~~P~IifiDEiDs 581 (806)
T 3cf2_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR----QAAPCVLFFDELDS 581 (806)
T ss_dssp SCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHH----TTCSEEEECSCGGG
T ss_pred cCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHH----HcCCceeechhhhH
Confidence 36788999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred cccCCCCCc--cccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCC
Q 013704 234 GAGRMGGTT--QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 309 (438)
Q Consensus 234 l~~~r~~~~--~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~ 309 (438)
+++.|+... ......+.++++| . +|||+ ....+|+||+|||+|+.||+|++||||||+.++ +|+
T Consensus 582 l~~~R~~~~~~~~~~~~rv~~~lL-~--------~mdg~---~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd 649 (806)
T 3cf2_A 582 IAKARGGNIGDGGGAADRVINQIL-T--------EMDGM---STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649 (806)
T ss_dssp CC--------------CHHHHHHH-H--------HHHSS---CSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC----
T ss_pred HhhccCCCCCCCchHHHHHHHHHH-H--------HHhCC---CCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcC
Confidence 999876322 2233445555444 4 35555 456789999999999999999999999999999 599
Q ss_pred HHHHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHHHhHHhHHHHHHHHhcCC-CCCCCC
Q 013704 310 REDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSK-EGPPTF 384 (438)
Q Consensus 310 ~e~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~i~~~~~e~i~~~~~~~~-~~~p~f 384 (438)
.++|.+||+.++++ .+++++.+++.+++|+|+||. ++|..+...++|+.+............-... .....-
T Consensus 650 ~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~---~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (806)
T 3cf2_A 650 EKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLT---EICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDD 726 (806)
T ss_dssp -CHHHHTTTTTSSCC--CCC----------------CHH---HHHHHHHHHHHHHHHC----------------------
T ss_pred HHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHH---HHHHHHHHHHHHHHHHhhhhhhhhhccCcccccccccc
Confidence 99999999988876 456788899999999999999 9999999999999876531111100000000 000000
Q ss_pred CCccc---cHHHHHHHHhhhhhhHHHHHHHHHHHHHhccccCC
Q 013704 385 EQPKM---TLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALG 424 (438)
Q Consensus 385 ~~~~~---~~~~ll~~~~~lv~eq~~v~~~~l~~~y~~~~~l~ 424 (438)
..+.+ .++..++..+++|+++++.+|.+|.++|-+....|
T Consensus 727 ~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~~~~~g 769 (806)
T 3cf2_A 727 PVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFG 769 (806)
T ss_dssp -CCC----CCTTTC---------------CCCC----------
T ss_pred ccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCcc
Confidence 01122 24456778888999999999988888776544443
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.2e-33 Score=308.37 Aligned_cols=221 Identities=21% Similarity=0.284 Sum_probs=178.9
Q ss_pred ccccccCCCCCChhhHHHHHHHHHH-hhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCC
Q 013704 124 SLDNTLDGLYIAPAFMDKVVVHITK-NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 202 (438)
Q Consensus 124 ~~~~~~~~~~i~~~~~d~~~~~i~k-~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge 202 (438)
.|+++.|-.....++.+.+...+.. ......++++|+|||||||||||||++|++||++++.+++.++++++.++|.|+
T Consensus 202 ~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ge 281 (806)
T 3cf2_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGE 281 (806)
T ss_dssp CGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTH
T ss_pred ChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchH
Confidence 4455544433333443333332222 222445789999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEE
Q 013704 203 PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282 (438)
Q Consensus 203 ~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI 282 (438)
+++.++.+|+.|. .++||||||||||++++++++ +..... +.+.+.|+.+++ |+ ....+|+||
T Consensus 282 se~~lr~lF~~A~----~~~PsIIfIDEiDal~~~r~~-~~~~~~-~riv~~LL~~md--------g~---~~~~~V~VI 344 (806)
T 3cf2_A 282 SESNLRKAFEEAE----KNAPAIIFIDELDAIAPKREK-THGEVE-RRIVSQLLTLMD--------GL---KQRAHVIVM 344 (806)
T ss_dssp HHHHHHHHHHHHT----TSCSEEEEEESGGGTCCTTTT-CCCTTH-HHHHHHHHTHHH--------HC---CGGGCEEEE
T ss_pred HHHHHHHHHHHHH----HcCCeEEEEehhcccccccCC-CCChHH-HHHHHHHHHHHh--------cc---cccCCEEEE
Confidence 9999999999997 999999999999999998764 333334 444455555444 33 335689999
Q ss_pred EecCCCCCCCccccCCCcceEEEe--cCCHHHHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhH
Q 013704 283 VTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 356 (438)
Q Consensus 283 ~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~ 356 (438)
+|||+++.||++|+|+||||+.++ +|+.++|.+||+.++++ .+++++.++..+.+|+|+||. ++|.++...
T Consensus 345 aaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~---~Lv~eA~~~ 421 (806)
T 3cf2_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLA---ALCSEAALQ 421 (806)
T ss_dssp EECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHH---HHHHHHHHH
T ss_pred EecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHH---HHHHHHHHH
Confidence 999999999999999999999999 59999999999988875 578899999999999999999 899999999
Q ss_pred HHHHHHhH
Q 013704 357 EVRKWISE 364 (438)
Q Consensus 357 air~~i~~ 364 (438)
++++....
T Consensus 422 A~~r~~~~ 429 (806)
T 3cf2_A 422 AIRKKMDL 429 (806)
T ss_dssp HHHHHHHH
T ss_pred HHHhcccc
Confidence 88887654
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.97 E-value=3.3e-29 Score=250.36 Aligned_cols=245 Identities=18% Similarity=0.260 Sum_probs=183.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh-CCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l-g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~ 233 (438)
+..+|+++|||||||||||++|+++|+++ +.+|+.++++++.++|.|+.++.++.+|..+. ..+|+||||||+|+
T Consensus 41 ~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~----~~~~~vl~iDEid~ 116 (322)
T 1xwi_A 41 KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLAR----ENKPSIIFIDEIDS 116 (322)
T ss_dssp TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHH----HTSSEEEEEETTTG
T ss_pred CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHH----hcCCcEEEeecHHH
Confidence 35677999999999999999999999999 89999999999999999999999999999887 88999999999999
Q ss_pred cccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCHH
Q 013704 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 311 (438)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e 311 (438)
+++.+... ......+.+. .|+..++ +. .....+++||+|||+++.||++++| ||+..++ +|+.+
T Consensus 117 l~~~~~~~-~~~~~~~~~~-~ll~~ld--------~~--~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~ 182 (322)
T 1xwi_A 117 LCGSRSEN-ESEAARRIKT-EFLVQMQ--------GV--GVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPH 182 (322)
T ss_dssp GGCCSSSC-CTTHHHHHHH-HHHHHHH--------CS--SSCCTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHH
T ss_pred hccccccc-cchHHHHHHH-HHHHHHh--------cc--cccCCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHH
Confidence 99876532 3333334444 4444333 22 1235789999999999999999999 9999888 59999
Q ss_pred HHHHHHHhhhCCCCC--C---HHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHHHhHHhHHHHHH-----------HHh
Q 013704 312 DRIGVCSGIFRTDNV--P---KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGK-----------RLV 375 (438)
Q Consensus 312 ~R~~Il~~~l~~~~v--~---~~~la~l~~~~sgadi~~~~al~~~~~~~air~~i~~~~~e~i~~-----------~~~ 375 (438)
+|.+|++.++..... + .+.++..+++|+|+||. ++|.++...++|+.+....+..+.. ...
T Consensus 183 ~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~---~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (322)
T 1xwi_A 183 ARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADIS---IIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLL 259 (322)
T ss_dssp HHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHH---HHHHHHHTHHHHHHHHCSEEEEEEEECSSCTTSEEEEEE
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccc
Confidence 999999998876433 3 34577788899999999 9999999999988664321110000 000
Q ss_pred c-CC------------C-CCCCCCCccccHHHH---HHHHhhhhhhHHHHHHHHHHHHHhcc
Q 013704 376 N-SK------------E-GPPTFEQPKMTLDKL---LEYGRMLVQEQENVKRVQLADKYLSE 420 (438)
Q Consensus 376 ~-~~------------~-~~p~f~~~~~~~~~l---l~~~~~lv~eq~~v~~~~l~~~y~~~ 420 (438)
. .. + .......+.++.+++ ++..++++.+++...|.++.++|..+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~ 321 (322)
T 1xwi_A 260 TPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQE 321 (322)
T ss_dssp EECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHTTCSC
T ss_pred ccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHccC
Confidence 0 00 0 000111234555555 45555779999999999999998543
No 11
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.97 E-value=1.8e-29 Score=251.55 Aligned_cols=245 Identities=20% Similarity=0.282 Sum_probs=182.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l 234 (438)
+..+|.++|||||||||||++|+++|++++.+++.++++++.+.|.|+.++.++.+|..+. ..+|+||||||+|.+
T Consensus 47 ~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l 122 (322)
T 3eie_A 47 NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAR----ENKPSIIFIDQVDAL 122 (322)
T ss_dssp TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHH----HTSSEEEEEECGGGG
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHH----hcCCeEEEechhhhh
Confidence 4567899999999999999999999999999999999999999999999999999999887 889999999999999
Q ss_pred ccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCHHH
Q 013704 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 312 (438)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e~ 312 (438)
.+.+.. .+..... .+...|+..++ +. .....++.||+|||+++.||++++| ||+..++ +|+.++
T Consensus 123 ~~~~~~-~~~~~~~-~~~~~ll~~l~--------~~--~~~~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~ 188 (322)
T 3eie_A 123 TGTRGE-GESEASR-RIKTELLVQMN--------GV--GNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAA 188 (322)
T ss_dssp SCC-------CCTH-HHHHHHHHHHG--------GG--GTSCCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHH
T ss_pred hccCCC-CcchHHH-HHHHHHHHHhc--------cc--cccCCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHH
Confidence 987643 2333333 44444555444 22 2345789999999999999999999 9999888 599999
Q ss_pred HHHHHHhhhCCCCC--C---HHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHHHhHHhHHHHH---HH---HhcCC---
Q 013704 313 RIGVCSGIFRTDNV--P---KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG---KR---LVNSK--- 378 (438)
Q Consensus 313 R~~Il~~~l~~~~v--~---~~~la~l~~~~sgadi~~~~al~~~~~~~air~~i~~~~~e~i~---~~---~~~~~--- 378 (438)
|.+|++.++..... + .+.++..+++|+|++|. ++|..+...++++.........+. .. +....
T Consensus 189 r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~---~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (322)
T 3eie_A 189 RTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIA---VVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGD 265 (322)
T ss_dssp HHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHH---HHHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSC
T ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccc
Confidence 99999998876543 3 34577788899999999 899999999998876543211110 00 00000
Q ss_pred ----------CCCCCCCCccccHHHH---HHHHhhhhhhHHHHHHHHHHHHHhcc
Q 013704 379 ----------EGPPTFEQPKMTLDKL---LEYGRMLVQEQENVKRVQLADKYLSE 420 (438)
Q Consensus 379 ----------~~~p~f~~~~~~~~~l---l~~~~~lv~eq~~v~~~~l~~~y~~~ 420 (438)
-.......+.++.+++ ++..++.+.+.++.++.+|.++|.++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~ 320 (322)
T 3eie_A 266 DGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 320 (322)
T ss_dssp TTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC--
T ss_pred cccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC
Confidence 0001122244555555 45555778889999999999999764
No 12
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.96 E-value=8.5e-30 Score=251.73 Aligned_cols=245 Identities=21% Similarity=0.288 Sum_probs=180.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l 234 (438)
+..++.++|||||||||||++|+++|++++.+++.++++++.+.|.|+.++.++.+|..|. ...|+||||||+|.+
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l 120 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR----QAAPCVLFFDELDSI 120 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHH----HTCSEEEEECSTTHH
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHH----hcCCeEEEEEChHHH
Confidence 5677899999999999999999999999999999999999999999999999999999987 789999999999999
Q ss_pred ccCCCCCc-cccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCHH
Q 013704 235 AGRMGGTT-QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 311 (438)
Q Consensus 235 ~~~r~~~~-~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e 311 (438)
...++... ......+.+...|+..++ +. ....++.||+|||+++.||++++|+|||+..++ .|+.+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~lL~~l~--------~~---~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~ 189 (301)
T 3cf0_A 121 AKARGGNIGDGGGAADRVINQILTEMD--------GM---STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 189 (301)
T ss_dssp HHHHTTTTCCSSCSCCHHHHHHHHHHH--------SS---CTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHH
T ss_pred hhccCCCcCCcchHHHHHHHHHHHHhh--------cc---cCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHH
Confidence 87643211 111122234444555444 22 335689999999999999999999999999888 59999
Q ss_pred HHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHHHhHHhHHHHHHHHhcC-CCCCCCCCC
Q 013704 312 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNS-KEGPPTFEQ 386 (438)
Q Consensus 312 ~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~i~~~~~e~i~~~~~~~-~~~~p~f~~ 386 (438)
+|.+|++.++.. .+++.+.++..+.+|+|++|. .+|.+++..++++.+............... ......-..
T Consensus 190 ~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~---~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (301)
T 3cf0_A 190 SRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLT---EICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPV 266 (301)
T ss_dssp HHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHH---HHHHHHHHHHHHHHHHHHC--------------------C
T ss_pred HHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccC
Confidence 999999988865 357788899999999999998 889998888888766442111000000000 000000011
Q ss_pred ccccHHHHHH---HHhhhhhhHHHHHHHHHHHHH
Q 013704 387 PKMTLDKLLE---YGRMLVQEQENVKRVQLADKY 417 (438)
Q Consensus 387 ~~~~~~~ll~---~~~~lv~eq~~v~~~~l~~~y 417 (438)
+.++.+++.+ ..++.+.+.+...|.+|.++|
T Consensus 267 ~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~ 300 (301)
T 3cf0_A 267 PEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTL 300 (301)
T ss_dssp CCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 3455555544 444567888888899998887
No 13
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.96 E-value=1e-28 Score=259.24 Aligned_cols=231 Identities=19% Similarity=0.249 Sum_probs=172.4
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~ 233 (438)
.+.+.|+++||+||||||||++|+++|++++.+|+.++++++...+.|..+..++.+|..|. ...||||||||+|+
T Consensus 44 ~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~----~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 44 IGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAK----AHAPCIVFIDEIDA 119 (476)
T ss_dssp TTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHH----HTCSEEEEEETGGG
T ss_pred cCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHH----hcCCCEEEEechhh
Confidence 46778999999999999999999999999999999999999999999999999999999987 88999999999999
Q ss_pred cccCCCCCc--cccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCC
Q 013704 234 GAGRMGGTT--QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 309 (438)
Q Consensus 234 l~~~r~~~~--~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~ 309 (438)
+..+++... ......+.++.+|.. ++++ ....++.||+|||+++.||++++|+|||++.+. .|+
T Consensus 120 l~~~r~~~~~g~~~~~~~~l~~LL~~---------ld~~---~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd 187 (476)
T 2ce7_A 120 VGRHRGAGLGGGHDEREQTLNQLLVE---------MDGF---DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPD 187 (476)
T ss_dssp TCCC---------CHHHHHHHHHHHH---------HHHS---CGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCC
T ss_pred hhhhcccccCcCcHHHHHHHHHHHHH---------Hhcc---CCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCC
Confidence 988764211 111222334333333 2233 234679999999999999999999999999888 599
Q ss_pred HHHHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHH---HHhHHhHHHHHHHHhcCCCCCC
Q 013704 310 REDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK---WISEVGIERIGKRLVNSKEGPP 382 (438)
Q Consensus 310 ~e~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~---~i~~~~~e~i~~~~~~~~~~~p 382 (438)
.++|.+|++.++.. .+++.+.++..+.+|+|++|. .++.++...+.++ .+...+++....+++.......
T Consensus 188 ~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~---~lv~~Aal~A~~~~~~~I~~~dl~~al~~v~~~~~~~~ 264 (476)
T 2ce7_A 188 MLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLE---NLVNEAALLAAREGRDKITMKDFEEAIDRVIAGPARKS 264 (476)
T ss_dssp HHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHH---HHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHH---HHHHHHHHHHHHcCCCeecHHHHHHHHHHHhcCccccc
Confidence 99999999987765 356677889999999999998 7777777666653 3555566666666653322211
Q ss_pred -CCCCccccHHHHHHHHhhhhh
Q 013704 383 -TFEQPKMTLDKLLEYGRMLVQ 403 (438)
Q Consensus 383 -~f~~~~~~~~~ll~~~~~lv~ 403 (438)
.....+....++++.||.++.
T Consensus 265 ~~~~~~e~~~~a~~e~G~a~~~ 286 (476)
T 2ce7_A 265 LLISPAEKRIIAYHEAGHAVVS 286 (476)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcchhhhhHHHHhhhHHHh
Confidence 122224446677888887643
No 14
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.96 E-value=1.8e-28 Score=248.07 Aligned_cols=245 Identities=20% Similarity=0.298 Sum_probs=174.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l 234 (438)
+..++.++|||||||||||++|+++|++++.+++.++++++.+.|.|+.++.++.+|..+. ...|+||||||+|.+
T Consensus 80 ~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l 155 (355)
T 2qp9_X 80 NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAR----ENKPSIIFIDQVDAL 155 (355)
T ss_dssp SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHH----HTSSEEEEEECGGGG
T ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHH----HcCCeEEEEechHhh
Confidence 4567899999999999999999999999999999999999999999999999999999887 889999999999999
Q ss_pred ccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCHHH
Q 013704 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 312 (438)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e~ 312 (438)
.+.+... +... .+.+...|+..++ +. .....+++||+|||+++.||++++| ||+..++ +|+.++
T Consensus 156 ~~~r~~~-~~~~-~~~~~~~ll~~l~--------~~--~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~ 221 (355)
T 2qp9_X 156 TGTRGEG-ESEA-SRRIKTELLVQMN--------GV--GNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAA 221 (355)
T ss_dssp TC-------CTH-HHHHHHHHHHHHH--------HC--C---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHH
T ss_pred cccCCCC-cchH-HHHHHHHHHHHhh--------cc--cccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHH
Confidence 8876532 2233 3344445555444 21 1235679999999999999999999 9999888 599999
Q ss_pred HHHHHHhhhCCCC--CC---HHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHHHhHHhHHH------HHHHHhcCCCC-
Q 013704 313 RIGVCSGIFRTDN--VP---KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIER------IGKRLVNSKEG- 380 (438)
Q Consensus 313 R~~Il~~~l~~~~--v~---~~~la~l~~~~sgadi~~~~al~~~~~~~air~~i~~~~~e~------i~~~~~~~~~~- 380 (438)
|.+||+.++.... ++ .+.|+..+++|+|++|. ++|.++...++++......+.. ...........
T Consensus 222 r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~---~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (355)
T 2qp9_X 222 RTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIA---VVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGD 298 (355)
T ss_dssp HHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHH---HHHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTS
T ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCccc
Confidence 9999998887654 23 44688888999999999 8999999888887653211000 00000000000
Q ss_pred ------------CCCCCCccccHHHH---HHHHhhhhhhHHHHHHHHHHHHHhcc
Q 013704 381 ------------PPTFEQPKMTLDKL---LEYGRMLVQEQENVKRVQLADKYLSE 420 (438)
Q Consensus 381 ------------~p~f~~~~~~~~~l---l~~~~~lv~eq~~v~~~~l~~~y~~~ 420 (438)
......+.++.+++ +...++.+.++++..|.+|.++|..+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~~~~~~ 353 (355)
T 2qp9_X 299 DGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 353 (355)
T ss_dssp SSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHHHTC--
T ss_pred cchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccC
Confidence 00011233555555 55555778999999999999999654
No 15
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.96 E-value=6.2e-29 Score=243.25 Aligned_cols=190 Identities=24% Similarity=0.378 Sum_probs=153.5
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~ 233 (438)
.+...|.|++|+||||||||+++++||.+++.+++.+++.++.+.+.|+.++.++.+|+.+. ...||++|+||+|.
T Consensus 39 ~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~----~~~p~i~~~Deid~ 114 (274)
T 2x8a_A 39 LGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAK----NSAPCVIFFDEVDA 114 (274)
T ss_dssp TTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHH----HTCSEEEEEETCTT
T ss_pred cCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHH----hcCCCeEeeehhhh
Confidence 46788899999999999999999999999999999999999999999999999999999886 78899999999999
Q ss_pred cccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCHH
Q 013704 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 311 (438)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e 311 (438)
++..+... ......+.+. .++. +|+|. .....++++++||+|+.||++++|+||||+.++ +|+.+
T Consensus 115 ~~~~r~~~-~~~~~~~~~~-~~l~--------~Lsgg---~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~ 181 (274)
T 2x8a_A 115 LCPRRSDR-ETGASVRVVN-QLLT--------EMDGL---EARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPA 181 (274)
T ss_dssp TCC----------CTTHHH-HHHH--------HHHTC---CSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHH
T ss_pred hhcccCCC-cchHHHHHHH-HHHH--------hhhcc---cccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHH
Confidence 88765421 1111223333 3333 34454 455678899999999999999999999999999 59999
Q ss_pred HHHHHHHhhhCC-------CCCCHHHHHHH--HccCCcchhHHHHHHHHhhhhHHHHHHHh
Q 013704 312 DRIGVCSGIFRT-------DNVPKEDIVKL--VDTFPGQSIDFFGALRARVYDDEVRKWIS 363 (438)
Q Consensus 312 ~R~~Il~~~l~~-------~~v~~~~la~l--~~~~sgadi~~~~al~~~~~~~air~~i~ 363 (438)
+|.+||+.+++. .+++.+.++.. +++|+|+||. ++|.+++..++++.+.
T Consensus 182 ~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~---~l~~~a~~~a~~~~~~ 239 (274)
T 2x8a_A 182 DRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLS---ALVREASICALRQEMA 239 (274)
T ss_dssp HHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHH---HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHH---HHHHHHHHHHHHHHHh
Confidence 999999988742 35677788876 4599999999 8999998888877543
No 16
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.95 E-value=1.6e-28 Score=255.75 Aligned_cols=244 Identities=18% Similarity=0.257 Sum_probs=174.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh-CCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~l-g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l 234 (438)
..+|+++|||||||||||++|+++|+++ +.+|+.++++++.+.|.|+.+..++.+|..+. ...|+||||||+|.+
T Consensus 164 ~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l 239 (444)
T 2zan_A 164 RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLAR----ENKPSIIFIDEIDSL 239 (444)
T ss_dssp GCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHH----HSCSEEEEESCTTTT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHH----HcCCeEEEEechHhh
Confidence 4567999999999999999999999999 89999999999999999999999999999887 889999999999999
Q ss_pred ccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCHHH
Q 013704 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 312 (438)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e~ 312 (438)
++.+... +... .+.+...|+. .+++. .....+++||+|||+++.||++++| ||+..++ +|+.++
T Consensus 240 ~~~~~~~-~~~~-~~~~~~~lL~--------~l~~~--~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~ 305 (444)
T 2zan_A 240 CGSRSEN-ESEA-ARRIKTEFLV--------QMQGV--GVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHA 305 (444)
T ss_dssp CCCSSCC-CCGG-GHHHHHHHHT--------TTTCS--SCCCSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHH
T ss_pred ccCCCCc-cccH-HHHHHHHHHH--------HHhCc--ccCCCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHH
Confidence 8876532 2233 3344445555 33443 1235789999999999999999999 9998888 599999
Q ss_pred HHHHHHhhhCCCCC-----CHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHHHhHHhHHHHHH-----------HHh-
Q 013704 313 RIGVCSGIFRTDNV-----PKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGK-----------RLV- 375 (438)
Q Consensus 313 R~~Il~~~l~~~~v-----~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~i~~~~~e~i~~-----------~~~- 375 (438)
|..||+.++..... +.+.|+..+++|+|++|. ++|..+...++|+.+....+..+.. ..+
T Consensus 306 r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~---~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (444)
T 2zan_A 306 RAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADIS---IIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLT 382 (444)
T ss_dssp HHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHH---HHHHHHHTHHHHHHHHCSEEEEECCBCSSCTTSBCSCEEE
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccc
Confidence 99999988876432 345688889999999999 8999999999988764321111000 000
Q ss_pred ------------cCCC-CCCCCCCccccHHHHH---HHHhhhhhhHHHHHHHHHHHHHhcc
Q 013704 376 ------------NSKE-GPPTFEQPKMTLDKLL---EYGRMLVQEQENVKRVQLADKYLSE 420 (438)
Q Consensus 376 ------------~~~~-~~p~f~~~~~~~~~ll---~~~~~lv~eq~~v~~~~l~~~y~~~ 420 (438)
+..+ .......+.++.+++. ...++++.++++..+.+|.++|..+
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~~~~~~~~~~ 443 (444)
T 2zan_A 383 PCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDFGQE 443 (444)
T ss_dssp EECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHHHHHHHHHHTSSCTTT
T ss_pred cCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCC
Confidence 0000 0011223456666665 4455778999999999998888543
No 17
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.95 E-value=1.7e-26 Score=221.80 Aligned_cols=187 Identities=20% Similarity=0.262 Sum_probs=146.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l 234 (438)
+...|.++||+||||||||++|+++|++++.+++.++++.+.+.+.|+.++.++.+|+.+. ...|++|||||+|.+
T Consensus 41 ~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~~il~iDeid~l 116 (257)
T 1lv7_A 41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAK----KAAPCIIFIDEIDAV 116 (257)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHH----TTCSEEEEETTHHHH
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHH----HcCCeeehhhhhhhh
Confidence 4567899999999999999999999999999999999999999999999999999999887 788999999999999
Q ss_pred ccCCCCCccc-cchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCHH
Q 013704 235 AGRMGGTTQY-TVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 311 (438)
Q Consensus 235 ~~~r~~~~~~-~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e 311 (438)
...+...... ....+.....++..++ +. ....++.||+|||+++.+|++++|+|||++.+. +|+.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~ll~~l~--------~~---~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~ 185 (257)
T 1lv7_A 117 GRQRGAGLGGGHDEREQTLNQMLVEMD--------GF---EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 185 (257)
T ss_dssp TCCCSTTSCCTTCHHHHHHHHHHHHHH--------TC---CSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHH
T ss_pred ccCCCCCcCCCchHHHHHHHHHHHHhh--------Cc---ccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHH
Confidence 8765422111 1112223333444233 33 335678999999999999999999999999888 59999
Q ss_pred HHHHHHHhhhCCC----CCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHH
Q 013704 312 DRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 359 (438)
Q Consensus 312 ~R~~Il~~~l~~~----~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air 359 (438)
+|.+|++.++... +++...++..+.+|++++|. .++.++...+.+
T Consensus 186 ~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~---~l~~~a~~~a~~ 234 (257)
T 1lv7_A 186 GREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLA---NLVNEAALFAAR 234 (257)
T ss_dssp HHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHH---HHHHHHHHHHHH
Confidence 9999999887653 34455677777888888888 677776655544
No 18
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=3.9e-27 Score=228.74 Aligned_cols=189 Identities=23% Similarity=0.361 Sum_probs=154.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l 234 (438)
+...+.++|||||||||||++|+++|++++.+++.++++++.+.+.|+....++.+|..+. ...|+||||||+|.+
T Consensus 47 ~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vl~iDEid~l 122 (285)
T 3h4m_A 47 GIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAK----EKAPSIIFIDEIDAI 122 (285)
T ss_dssp CCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHH----HTCSEEEEEETTHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHH----HcCCeEEEEECHHHh
Confidence 5677899999999999999999999999999999999999999999999999999999887 889999999999999
Q ss_pred ccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCHHH
Q 013704 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 312 (438)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e~ 312 (438)
.+++.+. ...........|..+++ .+++. ....++.||+|||.++.++++++|++||+..+. .|+.++
T Consensus 123 ~~~~~~~--~~~~~~~~~~~l~~ll~-----~~~~~---~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~ 192 (285)
T 3h4m_A 123 AAKRTDA--LTGGDREVQRTLMQLLA-----EMDGF---DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKG 192 (285)
T ss_dssp HBCCSSS--CCGGGGHHHHHHHHHHH-----HHHTT---CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHH
T ss_pred cccCccc--cCCccHHHHHHHHHHHH-----HhhCC---CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHH
Confidence 8876532 11222233344444443 33333 334689999999999999999999999999888 499999
Q ss_pred HHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHH
Q 013704 313 RIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360 (438)
Q Consensus 313 R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~ 360 (438)
|.+|++.++.. .+++.+.++..+.++++.+|. .++..+...++++
T Consensus 193 r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~---~l~~~a~~~a~~~ 241 (285)
T 3h4m_A 193 RLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELK---AICTEAGMNAIRE 241 (285)
T ss_dssp HHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHH---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHh
Confidence 99999988765 355678899999999999998 7777766666554
No 19
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.95 E-value=5.9e-27 Score=247.10 Aligned_cols=232 Identities=19% Similarity=0.257 Sum_probs=176.5
Q ss_pred CCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 013704 153 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (438)
Q Consensus 153 ~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (438)
..+.+.|+|+||+||||||||+||++||.+++.+++.++++++...+.|.....++.+|+.+. ...||++||||+|
T Consensus 58 ~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~----~~~p~il~IDEId 133 (499)
T 2dhr_A 58 EMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAK----RHAPCIVFIDEID 133 (499)
T ss_dssp TTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSS----SSSSCEEEEECGG
T ss_pred hccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHH----hcCCCEEEEehHH
Confidence 345678999999999999999999999999999999999999999999998889999999775 6789999999999
Q ss_pred ccccCCCCCc--cccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cC
Q 013704 233 AGAGRMGGTT--QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--AP 308 (438)
Q Consensus 233 ~l~~~r~~~~--~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP 308 (438)
.+...+.... ......+.+++ |+. .++|. .....+++|++||+|+.||++++|+|||++.+. +|
T Consensus 134 ~l~~~r~~~~~~~~~e~~~~l~~-LL~--------~Ldg~---~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~P 201 (499)
T 2dhr_A 134 AVGRKRGSGVGGGNDEREQTLNQ-LLV--------EMDGF---EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 201 (499)
T ss_dssp GTCCCSSSSTTTSSHHHHHHHHH-HHH--------HGGGC---CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCC
T ss_pred HHHHhhccCcCCCcHHHHHHHHH-HHH--------Hhccc---ccCccEEEEEecCChhhcCcccccccccceEEecCCC
Confidence 9987654211 11111233333 333 34555 445678999999999999999999999999988 59
Q ss_pred CHHHHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHH---HHHhHHhHHHHHHHHhcCCCCC
Q 013704 309 TREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR---KWISEVGIERIGKRLVNSKEGP 381 (438)
Q Consensus 309 ~~e~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air---~~i~~~~~e~i~~~~~~~~~~~ 381 (438)
+.++|.+||+.+++. .+++.+.++..+.+|+|++|. .++.++...+.+ ..+...+++....+++...+..
T Consensus 202 d~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~---~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~~~~~ 278 (499)
T 2dhr_A 202 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLE---NLLNEAALLAAREGRRKITMKDLEEAADRVMMLPAKK 278 (499)
T ss_dssp CHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHH---HHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTCSSSS
T ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHH---HHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcccccc
Confidence 999999999987764 345567788888899999998 777776666654 3455567777777766543322
Q ss_pred -CCCCCccccHHHHHHHHhhhhh
Q 013704 382 -PTFEQPKMTLDKLLEYGRMLVQ 403 (438)
Q Consensus 382 -p~f~~~~~~~~~ll~~~~~lv~ 403 (438)
..+.+.+....++++.||.++.
T Consensus 279 ~~~~~~~e~~~~a~~e~g~av~~ 301 (499)
T 2dhr_A 279 SLVLSPRDRRITAYHEAGHALAA 301 (499)
T ss_dssp CCCCCTTHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhhhHHHHHHHHHHH
Confidence 2333334456678888886644
No 20
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.94 E-value=3.2e-27 Score=225.76 Aligned_cols=185 Identities=22% Similarity=0.341 Sum_probs=136.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l 234 (438)
+...|.++|||||||||||++|+++|++++.+++.++++++.+.+.|.....++.+|..+. ...|+||||||+|.+
T Consensus 35 g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~~vl~iDeid~l 110 (262)
T 2qz4_A 35 GAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEAR----ARAPCIVYIDEIDAV 110 (262)
T ss_dssp -CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHH----HTCSEEEEEECC---
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHH----hcCCeEEEEeCcchh
Confidence 5578899999999999999999999999999999999999999999999999999999887 778999999999999
Q ss_pred ccCCCCCcc---ccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCC
Q 013704 235 AGRMGGTTQ---YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 309 (438)
Q Consensus 235 ~~~r~~~~~---~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~ 309 (438)
..++..... .....+.+. .|++.++ +. ....++.||+|||.++.||++++|+|||+..++ .|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~l~-~ll~~~~--------~~---~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~ 178 (262)
T 2qz4_A 111 GKKRSTTMSGFSNTEEEQTLN-QLLVEMD--------GM---GTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPT 178 (262)
T ss_dssp ----------------CHHHH-HHHHHHH--------TC---CTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCC
T ss_pred hccccccccCccchhHHHHHH-HHHHHhh--------Cc---CCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcC
Confidence 876542110 111122333 3333222 22 234689999999999999999999999999888 599
Q ss_pred HHHHHHHHHhhhCCCCCC------HHHHHHHHccCCcchhHHHHHHHHhhhhHHH
Q 013704 310 REDRIGVCSGIFRTDNVP------KEDIVKLVDTFPGQSIDFFGALRARVYDDEV 358 (438)
Q Consensus 310 ~e~R~~Il~~~l~~~~v~------~~~la~l~~~~sgadi~~~~al~~~~~~~ai 358 (438)
.++|.+|++.++....+. .+.++..+.+|++++|. .++.++...++
T Consensus 179 ~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~---~l~~~a~~~a~ 230 (262)
T 2qz4_A 179 LQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIA---NICNEAALHAA 230 (262)
T ss_dssp HHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHH---HHHHHHHTC--
T ss_pred HHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHH---HHHHHHHHHHH
Confidence 999999999888654443 24567777889998887 66666555544
No 21
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.94 E-value=4.5e-26 Score=230.51 Aligned_cols=232 Identities=17% Similarity=0.265 Sum_probs=171.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~ 236 (438)
..|.++|||||||||||++|+++|++++.+++.++++++.+.+.|+.+..++.+|..+. ...|+||||||+|.+.+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~ 190 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVAR----CQQPAVIFIDEIDSLLS 190 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHH----HTCSEEEEEETHHHHTB
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHH----hcCCeEEEEeCchhhhc
Confidence 56899999999999999999999999999999999999999999999999999999887 78899999999999988
Q ss_pred CCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCHHHHH
Q 013704 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRI 314 (438)
Q Consensus 237 ~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e~R~ 314 (438)
.+... . ......+...|+..++ +. ......++.||+|||+++.|+++++| ||+..++ +|+.++|.
T Consensus 191 ~~~~~-~-~~~~~~~~~~lL~~l~--------~~-~~~~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~ 257 (357)
T 3d8b_A 191 QRGDG-E-HESSRRIKTEFLVQLD--------GA-TTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARK 257 (357)
T ss_dssp C--------CHHHHHHHHHHHHHH--------C-----CCCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHH
T ss_pred cCCCC-c-chHHHHHHHHHHHHHh--------cc-cccCCCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHH
Confidence 75421 2 2223344444544343 21 11234689999999999999999999 9998777 59999999
Q ss_pred HHHHhhhCCCC--CCHH---HHHHHHccCCcchhHHHHHHHHhhhhHHHHHHHhHHhHHHHHHHHhcCCCCCCCCCCccc
Q 013704 315 GVCSGIFRTDN--VPKE---DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 389 (438)
Q Consensus 315 ~Il~~~l~~~~--v~~~---~la~l~~~~sgadi~~~~al~~~~~~~air~~i~~~~~e~i~~~~~~~~~~~p~f~~~~~ 389 (438)
+|++.++.... ++.+ .++..+++|+|++|. .+|..++..++|+.... .... +.... ...+
T Consensus 258 ~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~---~l~~~a~~~~ir~l~~~-~~~~-----~~~~~------~~~i 322 (357)
T 3d8b_A 258 QIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMT---QLCREASLGPIRSLQTA-DIAT-----ITPDQ------VRPI 322 (357)
T ss_dssp HHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHH---HHHHHHHTHHHHHCCC----------------------CCCB
T ss_pred HHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHhhhh-hhcc-----ccccc------cCCc
Confidence 99998886543 4433 467778899999999 88888888877753211 0000 10011 1123
Q ss_pred c---HHHHHHHHhhhhhhHHHHHHHHHHHHHhcc
Q 013704 390 T---LDKLLEYGRMLVQEQENVKRVQLADKYLSE 420 (438)
Q Consensus 390 ~---~~~ll~~~~~lv~eq~~v~~~~l~~~y~~~ 420 (438)
+ ++..+...++.+...+..++.+|.++|..+
T Consensus 323 ~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g~~ 356 (357)
T 3d8b_A 323 AYIDFENAFRTVRPSVSPKDLELYENWNKTFGCG 356 (357)
T ss_dssp CHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 3 444556666777788888999999999653
No 22
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.94 E-value=3.1e-26 Score=241.38 Aligned_cols=189 Identities=23% Similarity=0.328 Sum_probs=160.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l 234 (438)
+...|.++|||||||||||++|++||++++.+|+.++++++.+.+.|+....++.+|..|. ..+|++|||||+|.+
T Consensus 234 g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~----~~~p~iLfLDEId~l 309 (489)
T 3hu3_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPAIIFIDELDAI 309 (489)
T ss_dssp TCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHH----HTCSEEEEEESHHHH
T ss_pred CCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHH----hcCCcEEEecchhhh
Confidence 5678899999999999999999999999999999999999999999999999999999987 889999999999999
Q ss_pred ccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCHHH
Q 013704 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 312 (438)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e~ 312 (438)
.+++.. .. ....+.+...|+.+++ +. ....++.||+|||+++.|+++++|+|||+..++ +|+.++
T Consensus 310 ~~~~~~-~~-~~~~~~~~~~LL~~ld--------~~---~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~e 376 (489)
T 3hu3_A 310 APKREK-TH-GEVERRIVSQLLTLMD--------GL---KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376 (489)
T ss_dssp CBCTTS-CC-CHHHHHHHHHHHHHHH--------HS---CTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHH
T ss_pred cccccc-cc-chHHHHHHHHHHHHhh--------cc---ccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHH
Confidence 987653 22 2234455566666555 12 335689999999999999999999999999888 599999
Q ss_pred HHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHHHh
Q 013704 313 RIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 363 (438)
Q Consensus 313 R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~i~ 363 (438)
|.+||+.++.. .+++++.++..+.+|++++|. +||.++...++++...
T Consensus 377 R~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~---~L~~~A~~~a~r~~~~ 428 (489)
T 3hu3_A 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLA---ALCSEAALQAIRKKMD 428 (489)
T ss_dssp HHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHH---HHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHH---HHHHHHHHHHHHhccc
Confidence 99999988765 345677899999999999999 8888888888776543
No 23
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.93 E-value=2.2e-25 Score=227.47 Aligned_cols=231 Identities=19% Similarity=0.257 Sum_probs=156.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~ 236 (438)
.++.++|||||||||||++|++||++++.+|+.++++++.+.|.|+.+..++.+|..+. ...|+||||||||.++.
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~~~il~iDEid~l~~ 221 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAR----ELQPSIIFIDQVDSLLC 221 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHH----HSSSEEEEEETGGGGC-
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHH----hcCCeEEEEECchhhcc
Confidence 45689999999999999999999999999999999999999999999999999999887 88999999999999987
Q ss_pred CCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCHHHHH
Q 013704 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRI 314 (438)
Q Consensus 237 ~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e~R~ 314 (438)
.+.. ...... ..+...|+..++ |. ......++.||+|||+++.|+++++| ||+..++ .|+.++|.
T Consensus 222 ~~~~-~~~~~~-~~~~~~ll~~l~--------~~-~~~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~ 288 (389)
T 3vfd_A 222 ERRE-GEHDAS-RRLKTEFLIEFD--------GV-QSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRL 288 (389)
T ss_dssp --------CTH-HHHHHHHHHHHH--------HH-C-----CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHH
T ss_pred cCCC-ccchHH-HHHHHHHHHHhh--------cc-cccCCCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHH
Confidence 7542 122223 333344444333 22 11235679999999999999999999 9987777 59999999
Q ss_pred HHHHhhhCCCC--CCHH---HHHHHHccCCcchhHHHHHHHHhhhhHHHHHHHhHHhHHHHHHHHhcCCCCCCCCCCccc
Q 013704 315 GVCSGIFRTDN--VPKE---DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 389 (438)
Q Consensus 315 ~Il~~~l~~~~--v~~~---~la~l~~~~sgadi~~~~al~~~~~~~air~~i~~~~~e~i~~~~~~~~~~~p~f~~~~~ 389 (438)
+||+.++...+ ++.+ .++..+.+|++++|. .|+..++..++++..... .+.+. .. ....+
T Consensus 289 ~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~---~L~~~a~~~~~rel~~~~-----~~~~~-~~------~~~~i 353 (389)
T 3vfd_A 289 LLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLT---ALAKDAALGPIRELKPEQ-----VKNMS-AS------EMRNI 353 (389)
T ss_dssp HHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHH---HHHHHHTTHHHHTSCCC--------CCS-SS------CCCCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHhhhhhh-----hhccc-hh------hcCCc
Confidence 99998887644 3433 567777889998888 788888777776532210 00000 00 11234
Q ss_pred cHHHHHHH---HhhhhhhHHHHHHHHHHHHHhc
Q 013704 390 TLDKLLEY---GRMLVQEQENVKRVQLADKYLS 419 (438)
Q Consensus 390 ~~~~ll~~---~~~lv~eq~~v~~~~l~~~y~~ 419 (438)
+.+++.++ ....+..+.+..+.++.++|..
T Consensus 354 ~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g~ 386 (389)
T 3vfd_A 354 RLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGD 386 (389)
T ss_dssp CHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 44555433 3445566677778888888854
No 24
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.93 E-value=6e-28 Score=268.21 Aligned_cols=252 Identities=19% Similarity=0.297 Sum_probs=159.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l 234 (438)
+..++.++||+||||||||++|+++|++++.+++.++++++.++|+|+.++.++.+|+.|. ...||||||||+|++
T Consensus 507 ~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~vl~iDEid~l 582 (806)
T 1ypw_A 507 GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR----QAAPCVLFFDELDSI 582 (806)
T ss_dssp CCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHH----HHCSBCCCCSSHHHH
T ss_pred CCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHH----hcCCeEEEEEChhhh
Confidence 4567789999999999999999999999999999999999999999999999999999997 788999999999999
Q ss_pred ccCCCCCcc-ccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCHH
Q 013704 235 AGRMGGTTQ-YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 311 (438)
Q Consensus 235 ~~~r~~~~~-~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e 311 (438)
+..+++... .....+.+...|++ .|++. ....+++||+|||+++.||++++|||||++.++ .|+.+
T Consensus 583 ~~~r~~~~~~~~~~~~~v~~~LL~--------~ld~~---~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~ 651 (806)
T 1ypw_A 583 AKARGGNIGDGGGAADRVINQILT--------EMDGM---STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 651 (806)
T ss_dssp CCTTTTCCSHHHHHHHHHHHHHHT--------TCC---------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCS
T ss_pred hhhccCCCCCcchhHHHHHHHHHH--------HHhcc---cccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHH
Confidence 987754221 12223445455555 45555 445789999999999999999999999998888 59999
Q ss_pred HHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHHHhHHhHHHHH----HHHhcCCCCCCC
Q 013704 312 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIG----KRLVNSKEGPPT 383 (438)
Q Consensus 312 ~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~i~~~~~e~i~----~~~~~~~~~~p~ 383 (438)
+|.+||+.++.. .+++++.+++.+.+|+|++|. ++|..+...++++.+...-..... ..........+.
T Consensus 652 ~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~---~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 728 (806)
T 1ypw_A 652 SRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLT---EICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPV 728 (806)
T ss_dssp HHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHH---HHHHHHHHHHHSCC------------------------CC
T ss_pred HHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhhccccccccccccccc
Confidence 999999988865 356677889999999999999 889998888887765431100000 000000000000
Q ss_pred CCCccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccccCC
Q 013704 384 FEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEAALG 424 (438)
Q Consensus 384 f~~~~~~~~~ll~~~~~lv~eq~~v~~~~l~~~y~~~~~l~ 424 (438)
-.-....++..++..++.+.+++..+|.++.+++-....+|
T Consensus 729 ~~i~~~~f~~a~~~~~~svs~~~~~~ye~~~~~~~~~~~~g 769 (806)
T 1ypw_A 729 PEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFG 769 (806)
T ss_dssp TTTTTTSSCCCCCC---------------------------
T ss_pred CccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhccCC
Confidence 00000111222344556677777777888777765444433
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.93 E-value=2.4e-25 Score=217.69 Aligned_cols=231 Identities=18% Similarity=0.263 Sum_probs=162.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~ 236 (438)
.++.++||+||||||||++|+++|++++.+++.++++++.+.+.|+.+..++.+|..+. ...|++|||||+|.+..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~vl~iDEid~l~~ 127 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVAR----HMQPSIIFIDEVDSLLS 127 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHH----HTCSEEEEEETGGGTSB
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHH----HcCCcEEEeccHHHhcc
Confidence 45789999999999999999999999999999999999999999999999999999887 78999999999999988
Q ss_pred CCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCHHHHH
Q 013704 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRI 314 (438)
Q Consensus 237 ~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e~R~ 314 (438)
.+.. .......+.. ..|+..++ .+.. .....++.||+|||+++.++++++| ||+..++ +|+.++|.
T Consensus 128 ~~~~-~~~~~~~~~~-~~ll~~l~-----~~~~---~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~ 195 (297)
T 3b9p_A 128 ERSS-SEHEASRRLK-TEFLVEFD-----GLPG---NPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRE 195 (297)
T ss_dssp CC------CCSHHHH-HHHHHHHH-----HCC---------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHH
T ss_pred cccc-CcchHHHHHH-HHHHHHHh-----cccc---cCCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHH
Confidence 7542 1222223333 34444333 1111 0123578999999999999999999 9988877 59999999
Q ss_pred HHHHhhhCCCC--CCHH---HHHHHHccCCcchhHHHHHHHHhhhhHHHHHHHhHHhHHHHHHHHhcCCCCCCCCCCccc
Q 013704 315 GVCSGIFRTDN--VPKE---DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 389 (438)
Q Consensus 315 ~Il~~~l~~~~--v~~~---~la~l~~~~sgadi~~~~al~~~~~~~air~~i~~~~~e~i~~~~~~~~~~~p~f~~~~~ 389 (438)
.|++.++...+ ++.+ .++..+.+|+|++|. .++..+...++|+..... .+.+... ....+
T Consensus 196 ~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~---~l~~~a~~~a~r~~~~~~------~~~~~~~------~~~~i 260 (297)
T 3b9p_A 196 LLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLT---ALAKDAALEPIRELNVEQ------VKCLDIS------AMRAI 260 (297)
T ss_dssp HHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHH---HHHHHHTTHHHHTCC--------------CC------CCCCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHHhhhh------ccccccc------ccCCc
Confidence 99998876533 4433 467777899999998 788888887777642210 0001000 11235
Q ss_pred cHHHHHHHHh---hhhhhHHHHHHHHHHHHHh
Q 013704 390 TLDKLLEYGR---MLVQEQENVKRVQLADKYL 418 (438)
Q Consensus 390 ~~~~ll~~~~---~lv~eq~~v~~~~l~~~y~ 418 (438)
+.+++.++.. +.+..++...+.+|.+.|.
T Consensus 261 ~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~ 292 (297)
T 3b9p_A 261 TEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYG 292 (297)
T ss_dssp CHHHHHHHTTSCCCSSCHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 5566655433 3455667777888887773
No 26
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.92 E-value=4.4e-25 Score=211.49 Aligned_cols=187 Identities=21% Similarity=0.289 Sum_probs=143.4
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~ 233 (438)
.+...|.|++|+||||||||++++++|..++.+++.+++..+...+.+...+.++.+|+.+. ...|+++||||+|.
T Consensus 44 ~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~i~~~Deid~ 119 (254)
T 1ixz_A 44 MGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAK----RHAPCIVFIDEIDA 119 (254)
T ss_dssp TTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHT----TSSSEEEEEETHHH
T ss_pred cCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHH----hcCCeEEEehhhhh
Confidence 35677889999999999999999999999999999999988888888888888889998875 67899999999999
Q ss_pred cccCCCCCc--cccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCC
Q 013704 234 GAGRMGGTT--QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 309 (438)
Q Consensus 234 l~~~r~~~~--~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~ 309 (438)
+...+.... ......+.+. .++. +++|. .....++++++||+|+.||++++|++||++.++ .|+
T Consensus 120 l~~~~~~~~~~~~~~~~~~~~-~ll~--------~l~g~---~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~ 187 (254)
T 1ixz_A 120 VGRKRGSGVGGGNDEREQTLN-QLLV--------EMDGF---EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 187 (254)
T ss_dssp HHC---------CHHHHHHHH-HHHH--------HHHTC---CTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCC
T ss_pred hhcccCccccccchHHHHHHH-HHHH--------HHhCC---CCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcC
Confidence 976643210 1111122333 3333 33343 334567888899999999999999999999998 499
Q ss_pred HHHHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHH
Q 013704 310 REDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 359 (438)
Q Consensus 310 ~e~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air 359 (438)
.++|.+||+.+... .+++...++..+.+|+|++|. .++.++...+++
T Consensus 188 ~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~---~~~~~a~~~a~~ 238 (254)
T 1ixz_A 188 VKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLE---NLLNEAALLAAR 238 (254)
T ss_dssp HHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHH---HHHHHHHHHHHH
Confidence 99999999977654 345677788888899999998 666665554443
No 27
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.91 E-value=3.1e-26 Score=220.75 Aligned_cols=184 Identities=19% Similarity=0.271 Sum_probs=140.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l 234 (438)
+...|.++|||||||||||++|+++|++++.+++.++++.+.+.+.|..+..++.+|+.+. ...|+||||||+|.+
T Consensus 40 ~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~~vl~iDEid~l 115 (268)
T 2r62_A 40 GAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAK----KQAPSIIFIDEIDAI 115 (268)
T ss_dssp SCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHH----HSCSCEEEESCGGGT
T ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHH----hcCCeEEEEeChhhh
Confidence 5567889999999999999999999999999999999999999999988888888999887 788999999999999
Q ss_pred ccCCCCCcc---ccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCC
Q 013704 235 AGRMGGTTQ---YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 309 (438)
Q Consensus 235 ~~~r~~~~~---~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~ 309 (438)
...+..... .....+.+ ..|+. .+++. .....++.||+|||.++.||++++|+|||+..++ .|+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~-~~ll~--------~l~~~--~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~ 184 (268)
T 2r62_A 116 GKSRAAGGVVSGNDEREQTL-NQLLA--------EMDGF--GSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPD 184 (268)
T ss_dssp TC----------CCCSCSST-TTTTT--------TTTCS--SCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCC
T ss_pred cccccccccCCCchhHHHHH-HHHHH--------HhhCc--ccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcC
Confidence 876421100 00011111 22222 23332 1234568999999999999999999999998877 599
Q ss_pred HHHHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhH
Q 013704 310 REDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 356 (438)
Q Consensus 310 ~e~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~ 356 (438)
.++|.+||+.++.. .+++.+.++..+.+|+|++|. .++.++...
T Consensus 185 ~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~---~l~~~a~~~ 232 (268)
T 2r62_A 185 FNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLA---NIINEAALL 232 (268)
T ss_dssp TTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHH---HHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHH---HHHHHHHHH
Confidence 99999999988765 345566788888899998887 555554433
No 28
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.91 E-value=6.3e-24 Score=206.70 Aligned_cols=186 Identities=20% Similarity=0.282 Sum_probs=142.4
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccc
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 233 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~ 233 (438)
.+...|.|++|+||||||||+++++|+..++.+++.+++..+...+.+.....++.+|+.+. ...|+++||||+|.
T Consensus 68 ~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~i~~iDeid~ 143 (278)
T 1iy2_A 68 MGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAK----RHAPCIVFIDEIDA 143 (278)
T ss_dssp TTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHH----TSCSEEEEEETHHH
T ss_pred cCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHH----hcCCcEEehhhhHh
Confidence 35677889999999999999999999999999999999988888888888888889999876 67899999999999
Q ss_pred cccCCCCCc-c-ccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCC
Q 013704 234 GAGRMGGTT-Q-YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 309 (438)
Q Consensus 234 l~~~r~~~~-~-~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~ 309 (438)
+...+.... . .....+.+. .++. +++|. .....++++++||+|+.||++++|++||++.++ .|+
T Consensus 144 l~~~~~~~~~~~~~~~~~~~~-~ll~--------~lsgg---~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~ 211 (278)
T 1iy2_A 144 VGRKRGSGVGGGNDEREQTLN-QLLV--------EMDGF---EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 211 (278)
T ss_dssp HHCC--------CHHHHHHHH-HHHH--------HHTTC---CTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCC
T ss_pred hhcccccccCCcchHHHHHHH-HHHH--------HHhCC---CCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcC
Confidence 876543210 0 111122332 2333 34444 344567888899999999999999999999888 499
Q ss_pred HHHHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHH
Q 013704 310 REDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 358 (438)
Q Consensus 310 ~e~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~ai 358 (438)
.++|.+||+.+... .+++...++..+.+|+|++|. .++.++...+.
T Consensus 212 ~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~---~l~~~a~~~a~ 261 (278)
T 1iy2_A 212 VKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLE---NLLNEAALLAA 261 (278)
T ss_dssp HHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHH---HHHHHHHHHHH
Confidence 99999999977764 345566788888888888888 66666554443
No 29
>3thg_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; four-helix bundle, rubisco reactivation, chloroplast stroma, ATPase; 1.88A {Larrea tridentata}
Probab=99.89 E-value=4.5e-23 Score=170.36 Aligned_cols=103 Identities=86% Similarity=1.362 Sum_probs=96.7
Q ss_pred CCHHHHHHHHHhhhCCCCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHHHhHHhHHHHHHHHhcCCCCCCCCCCc
Q 013704 308 PTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQP 387 (438)
Q Consensus 308 P~~e~R~~Il~~~l~~~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~i~~~~~e~i~~~~~~~~~~~p~f~~~ 387 (438)
-++++|+.|++.++.+++++.+++.++++.|++++||||+|||+++|+++||+||.+.|+++++++++++++++|+|++|
T Consensus 5 ~treDrigiv~gif~~Dgls~~dv~~LVd~Fp~QsiDFFGALRsR~YDd~Vr~wI~~vG~e~ig~~Lvns~e~~P~F~~P 84 (107)
T 3thg_A 5 FTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQP 84 (107)
T ss_dssp CCHHHHHHHHHHHTTTTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCC
T ss_pred ccHHHHHHHHHHHhccCCCCHHHHHHHHHcCCCCCchHHHHHHHHHhHHHHHHHHHHhCHHHHhHHHHcCCCCCCCCCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHhhhhhhHHHHHH
Q 013704 388 KMTLDKLLEYGRMLVQEQENVKR 410 (438)
Q Consensus 388 ~~~~~~ll~~~~~lv~eq~~v~~ 410 (438)
++|+++|+++|+++++||++|++
T Consensus 85 ~~tl~~Lle~G~~Lv~EQ~~V~~ 107 (107)
T 3thg_A 85 KMTIDKLLGYGGMLVQEQENVKR 107 (107)
T ss_dssp CCCHHHHHHHHHHHHTTC-----
T ss_pred cCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999985
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.88 E-value=1.2e-21 Score=217.53 Aligned_cols=221 Identities=21% Similarity=0.282 Sum_probs=172.2
Q ss_pred ccccccccCCCCCChhhHHHHHHHHHH-hhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCC
Q 013704 122 QYSLDNTLDGLYIAPAFMDKVVVHITK-NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 200 (438)
Q Consensus 122 ~~~~~~~~~~~~i~~~~~d~~~~~i~k-~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~ 200 (438)
...|+++.+-......+.+.+...+.. ..+...++.++.++||+||||||||++|++||.+++.+++.+++.++.+.+.
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~ 279 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSST
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhh
Confidence 455677766544444443333222221 2233457788999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCce
Q 013704 201 GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVP 280 (438)
Q Consensus 201 Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~ 280 (438)
|+.+..++.+|+.+. ...|++|||||+|.+++.++. .+ ....+.+...|+++++ |. ....++.
T Consensus 280 g~~~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~-~~-~~~~~~~~~~Ll~ll~--------g~---~~~~~v~ 342 (806)
T 1ypw_A 280 GESESNLRKAFEEAE----KNAPAIIFIDELDAIAPKREK-TH-GEVERRIVSQLLTLMD--------GL---KQRAHVI 342 (806)
T ss_dssp THHHHHHHHHHHHHH----HHCSEEEEEESGGGTSCTTSC-CC-SHHHHHHHHHHHHHHH--------SS---CTTSCCE
T ss_pred hhHHHHHHHHHHHHH----hcCCcEEEeccHHHhhhcccc-cc-chHHHHHHHHHHHHhh--------hh---cccccEE
Confidence 999999999999987 778999999999999987652 22 2234455566777555 33 3457899
Q ss_pred EEEecCCCCCCCccccCCCcceEEEe--cCCHHHHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhh
Q 013704 281 IIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVY 354 (438)
Q Consensus 281 VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~ 354 (438)
+|+|||+++.+|++++|+|||++.+. +|+.++|.+|++.+... .+++.+.++..+.+|+++++. +++..+.
T Consensus 343 vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~---~l~~ea~ 419 (806)
T 1ypw_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLA---ALCSEAA 419 (806)
T ss_dssp EEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHH---HHHHHHH
T ss_pred EecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHH---HHHHHHH
Confidence 99999999999999999999999888 59999999999977765 345677888899999999988 7777777
Q ss_pred hHHHHHHH
Q 013704 355 DDEVRKWI 362 (438)
Q Consensus 355 ~~air~~i 362 (438)
..++++..
T Consensus 420 ~~a~r~~~ 427 (806)
T 1ypw_A 420 LQAIRKKM 427 (806)
T ss_dssp HHHHHHTT
T ss_pred HHHHhhhc
Confidence 66666543
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.83 E-value=1.1e-22 Score=212.00 Aligned_cols=173 Identities=9% Similarity=0.041 Sum_probs=113.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC--CceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~lg--~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (438)
+..+|+++|||||||||||++|+++|++++ .+|+.++++++.+++.|+++. +++.|+.|.. .+...||||||||+|
T Consensus 59 ~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~-~~~~~~~il~iDEid 136 (456)
T 2c9o_A 59 KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIG-LRIKETKEVYEGEVT 136 (456)
T ss_dssp TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEE-EEEEEEEEEEEEEEE
T ss_pred CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHh-hhhcCCcEEEEechh
Confidence 445679999999999999999999999999 999999999999999999987 8999998710 117889999999999
Q ss_pred ccccCCCCCccccch---h---------------HHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCcc
Q 013704 233 AGAGRMGGTTQYTVN---N---------------QMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 294 (438)
Q Consensus 233 ~l~~~r~~~~~~~~~---~---------------~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~a 294 (438)
++++++......... . +.....+..+.. .+. .....+.|++|||+++.+|++
T Consensus 137 ~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~-------~~~---~~~~~v~i~attn~~~~ld~a 206 (456)
T 2c9o_A 137 ELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK-------ERV---EAGDVIYIEANSGAVKRQGRC 206 (456)
T ss_dssp EEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH-------TTC---CTTEEEEEETTTCCEEEEEEE
T ss_pred hcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh-------ccC---CCCCEEEEEcCCCCcccCChh
Confidence 999886532111000 0 011111212111 011 223345555899999999999
Q ss_pred ccCCCcceE----EEecCC--HHHHHHHHHhhhCCCCCCHHHHHHHHccCCcchhH
Q 013704 295 LIRDGRMEK----FYWAPT--REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSID 344 (438)
Q Consensus 295 LlR~GRfd~----~i~lP~--~e~R~~Il~~~l~~~~v~~~~la~l~~~~sgadi~ 344 (438)
++|+||||+ .+.+|+ .++|.+|++.+... +++.++..+++ |+|+.
T Consensus 207 ~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~---dl~~~a~~t~g--gadl~ 257 (456)
T 2c9o_A 207 DTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLH---DLDVANARPQG--GQDIL 257 (456)
T ss_dssp TTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHH---HHHHTC------------
T ss_pred hcCCcccCcceeEecCCCchhHHHHHHHHHHHHHH---HHHHHHHhCCC--hhHHH
Confidence 999999999 333564 46788887755432 35556666666 77776
No 32
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.80 E-value=6.9e-19 Score=170.19 Aligned_cols=165 Identities=11% Similarity=0.146 Sum_probs=117.3
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChH----HHHHHHHHHHHHHHHhCCceeEEec
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA----KLIRQRYREAADIIKKGKMCCLFIN 229 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~----~~ir~~f~~A~~~~~~~~p~ILfID 229 (438)
.+...+.++||+||||||||++|+++|++++.+++.+++++ .+.|... ..++.+|..+. ...+++||||
T Consensus 59 ~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~---~~~g~~~~~~~~~~~~~~~~~~----~~~~~vl~iD 131 (272)
T 1d2n_A 59 SDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDDAY----KSQLSCVVVD 131 (272)
T ss_dssp CSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGG---GCTTCCHHHHHHHHHHHHHHHH----TSSEEEEEEC
T ss_pred cCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHH---HhcCCchHHHHHHHHHHHHHHH----hcCCcEEEEE
Confidence 34567899999999999999999999999999999998774 3344433 45677777665 7889999999
Q ss_pred cccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCc-cccCCCcceEEEecC
Q 013704 230 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA-PLIRDGRMEKFYWAP 308 (438)
Q Consensus 230 EiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~-aLlR~GRfd~~i~lP 308 (438)
|+|.+++.+.... .....+...|..+++ + ......++.||+|||.++.+++ .+++ ||+..+.+|
T Consensus 132 Eid~l~~~~~~~~---~~~~~~l~~L~~~~~--------~--~~~~~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p 196 (272)
T 1d2n_A 132 DIERLLDYVPIGP---RFSNLVLQALLVLLK--------K--APPQGRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVP 196 (272)
T ss_dssp CHHHHTTCBTTTT---BCCHHHHHHHHHHTT--------C--CCSTTCEEEEEEEESCHHHHHHTTCTT--TSSEEEECC
T ss_pred ChhhhhccCCCCh---hHHHHHHHHHHHHhc--------C--ccCCCCCEEEEEecCChhhcchhhhhc--ccceEEcCC
Confidence 9999977643211 112345556666554 1 1123467889999999998888 5666 999999998
Q ss_pred CHHHHHHHHHhhhCCCCCCHHHHHHHHccCCc
Q 013704 309 TREDRIGVCSGIFRTDNVPKEDIVKLVDTFPG 340 (438)
Q Consensus 309 ~~e~R~~Il~~~l~~~~v~~~~la~l~~~~sg 340 (438)
...+|.+|.+.+.....++.+.+..++....|
T Consensus 197 ~l~~r~~i~~i~~~~~~~~~~~~~~l~~~~~g 228 (272)
T 1d2n_A 197 NIATGEQLLEALELLGNFKDKERTTIAQQVKG 228 (272)
T ss_dssp CEEEHHHHHHHHHHHTCSCHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHhcCCCCHHHHHHHHHHhcC
Confidence 77766666654444445666655555544433
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.79 E-value=1.7e-18 Score=169.40 Aligned_cols=157 Identities=13% Similarity=0.118 Sum_probs=121.3
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHh-------CCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeE
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM-------GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL 226 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~l-------g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL 226 (438)
...+.+.++||+||||||||++|+++|+.+ ..+++.++++.+.+.+.|.....++.+|..+ .++||
T Consensus 62 ~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~-------~~~vl 134 (309)
T 3syl_A 62 AHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA-------MGGVL 134 (309)
T ss_dssp CSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH-------TTSEE
T ss_pred CCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc-------CCCEE
Confidence 334566789999999999999999999997 3489999999999999999998888888865 47899
Q ss_pred EeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC-----CCCccccCCCcc
Q 013704 227 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGRM 301 (438)
Q Consensus 227 fIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~-----~Ld~aLlR~GRf 301 (438)
||||+|.++..+.+ ....+.+...|+++++ ....++.||+|||... .++++|++ ||
T Consensus 135 ~iDEid~l~~~~~~----~~~~~~~~~~Ll~~l~-------------~~~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~ 195 (309)
T 3syl_A 135 FIDEAYYLYRPDNE----RDYGQEAIEILLQVME-------------NNRDDLVVILAGYADRMENFFQSNPGFRS--RI 195 (309)
T ss_dssp EEETGGGSCCCC-------CCTHHHHHHHHHHHH-------------HCTTTCEEEEEECHHHHHHHHHHSTTHHH--HE
T ss_pred EEEChhhhccCCCc----ccccHHHHHHHHHHHh-------------cCCCCEEEEEeCChHHHHHHHhhCHHHHH--hC
Confidence 99999999865432 1123455666777666 3456788999998654 35799999 99
Q ss_pred eEEEec--CCHHHHHHHHHhhhCCCC--CCHHHHHHHHc
Q 013704 302 EKFYWA--PTREDRIGVCSGIFRTDN--VPKEDIVKLVD 336 (438)
Q Consensus 302 d~~i~l--P~~e~R~~Il~~~l~~~~--v~~~~la~l~~ 336 (438)
+..+.+ |+.+++.+|++.++...+ ++.+.+..+.+
T Consensus 196 ~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~ 234 (309)
T 3syl_A 196 AHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRA 234 (309)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHH
T ss_pred CeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 888884 899999999998887543 45555555544
No 34
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.73 E-value=1.4e-17 Score=177.55 Aligned_cols=166 Identities=19% Similarity=0.300 Sum_probs=112.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEecccccc---------CCCCChHHHHHHHHHHHHHHHHhCCceeEEe
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------GNAGEPAKLIRQRYREAADIIKKGKMCCLFI 228 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s---------~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfI 228 (438)
++..+||+||||||||++|++||..++.+++.++++.+.. .|.|.....+...|..+. ...| ||||
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~----~~~~-vl~l 181 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAG----KLNP-VFLL 181 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTC----SSSE-EEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhh----ccCC-EEEE
Confidence 4678999999999999999999999999999998876543 566666666667777653 3444 9999
Q ss_pred ccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccC--CCCCceEEEecCCCCCCCccccCCCcceEEEe
Q 013704 229 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE--ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 306 (438)
Q Consensus 229 DEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~--~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~ 306 (438)
||+|++...+.+. ....|++++++..+..+...+... ...++.||+|||+++.|+++|++ ||+. +.
T Consensus 182 DEid~l~~~~~~~---------~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~v-i~ 249 (543)
T 3m6a_A 182 DEIDKMSSDFRGD---------PSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RMEI-IN 249 (543)
T ss_dssp EESSSCC------------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEEE-EE
T ss_pred hhhhhhhhhhccC---------HHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcce-ee
Confidence 9999998764321 235677777754443333222211 23688999999999999999999 9964 55
Q ss_pred --cCCHHHHHHHHHhhhCC------------CCCCHHHHHHHHccCCc
Q 013704 307 --APTREDRIGVCSGIFRT------------DNVPKEDIVKLVDTFPG 340 (438)
Q Consensus 307 --lP~~e~R~~Il~~~l~~------------~~v~~~~la~l~~~~sg 340 (438)
.|+.+++.+|++.++.. ..++.+.+..++..|++
T Consensus 250 ~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~ 297 (543)
T 3m6a_A 250 IAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTR 297 (543)
T ss_dssp CCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCC
T ss_pred eCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCCh
Confidence 49999999999876621 23456778888877764
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.69 E-value=1.1e-16 Score=155.87 Aligned_cols=157 Identities=18% Similarity=0.155 Sum_probs=111.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEecccccc-CCCCC-hHHHHHHHHHHHHHHHH-hCCceeEEeccccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-GNAGE-PAKLIRQRYREAADIIK-KGKMCCLFINDLDA 233 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s-~~~Ge-~~~~ir~~f~~A~~~~~-~~~p~ILfIDEiD~ 233 (438)
..|.++||+||||||||++|+++|+.++.+++.++++.+.. .|.|. ....++.++..+...+. ...++||||||+|.
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~ 127 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDK 127 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhh
Confidence 35678999999999999999999999999999999998775 56663 34566776664311111 23489999999999
Q ss_pred cccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEe----cCCCCCCCccccCCCcceEEEec--
Q 013704 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVT----GNDFSTLYAPLIRDGRMEKFYWA-- 307 (438)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~T----TN~~~~Ld~aLlR~GRfd~~i~l-- 307 (438)
+.....+ .........+...|++++++.......+. ....++.+|+| ++.+..++++|++ ||+..+.+
T Consensus 128 l~~~~~~-~~~~~~~~~~~~~Ll~~le~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~ 201 (310)
T 1ofh_A 128 ICKKGEY-SGADVSREGVQRDLLPLVEGSTVSTKHGM---VKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTA 201 (310)
T ss_dssp GSCCSSC-CSSHHHHHHHHHHHHHHHHCCEEEETTEE---EECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCC
T ss_pred cCccccc-cccchhHHHHHHHHHHHhcCCeEeccccc---ccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCC
Confidence 9876432 22333444556778777763211111111 23457888888 5678899999998 99977774
Q ss_pred CCHHHHHHHHHh
Q 013704 308 PTREDRIGVCSG 319 (438)
Q Consensus 308 P~~e~R~~Il~~ 319 (438)
|+.+++.+|++.
T Consensus 202 ~~~~~~~~il~~ 213 (310)
T 1ofh_A 202 LSAADFERILTE 213 (310)
T ss_dssp CCHHHHHHHHHS
T ss_pred cCHHHHHHHHHh
Confidence 899999999984
No 36
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.68 E-value=1.3e-17 Score=173.09 Aligned_cols=134 Identities=12% Similarity=0.079 Sum_probs=59.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEecccccc-CCCCC-hHHHHHHHHHHHHHHHHhCCceeEEeccccccc
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-GNAGE-PAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 235 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s-~~~Ge-~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~ 235 (438)
.|.++||+||||||||++|+++|+.++.+|+.++++.+.+ +|+|+ .+..++.+|..|.. ++++||++.+.
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~--------~~~~De~d~~~ 120 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMK--------LVRQQEIAKNR 120 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHH--------HHHHHHHHSCC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHh--------cchhhhhhhhh
Confidence 5789999999999999999999999999999999999888 69995 89999999998863 33589998875
Q ss_pred cCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEe-cCCCCCCCccccCCCcceEEEe--cCCHH-
Q 013704 236 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVT-GNDFSTLYAPLIRDGRMEKFYW--APTRE- 311 (438)
Q Consensus 236 ~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~T-TN~~~~Ld~aLlR~GRfd~~i~--lP~~e- 311 (438)
.... .... +++...|+. .|||+. ....+ +++ ||+++.||++|+|+||||+.++ +|+..
T Consensus 121 ~~~~----~~~e-~rvl~~LL~--------~~dg~~---~~~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~ 182 (444)
T 1g41_A 121 ARAE----DVAE-ERILDALLP--------PAKNQW---GEVEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVS 182 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccch----hhHH-HHHHHHHHH--------Hhhccc---ccccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCcc
Confidence 4422 2222 344455554 455652 22233 555 9999999999999999999999 58776
Q ss_pred HHHHHH
Q 013704 312 DRIGVC 317 (438)
Q Consensus 312 ~R~~Il 317 (438)
.|.+|+
T Consensus 183 ~~~ei~ 188 (444)
T 1g41_A 183 MGVEIM 188 (444)
T ss_dssp ------
T ss_pred chhhhh
Confidence 677775
No 37
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.65 E-value=2.2e-16 Score=141.10 Aligned_cols=135 Identities=20% Similarity=0.210 Sum_probs=96.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEEeccccc--cCCCCChHHHHHHHHHHHHHHHHhCCce
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMC 224 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l----------g~~~i~vs~~~l~--s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ 224 (438)
..+.+++|+||||||||++++++++.+ +.+++.+++..+. ..+.|.....++.+++... +...++
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 117 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLA---KQEGNV 117 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHH---HSTTTE
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHh---hcCCCe
Confidence 346789999999999999999999996 7888888887665 3344555556666666443 256789
Q ss_pred eEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC-----CCCccccCCC
Q 013704 225 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDG 299 (438)
Q Consensus 225 ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~-----~Ld~aLlR~G 299 (438)
||||||+|.+...+..... ..+...|..+++ ..++.+|+|||.+. .+++++++
T Consensus 118 vl~iDe~~~l~~~~~~~~~-----~~~~~~l~~~~~---------------~~~~~~i~~~~~~~~~~~~~~~~~l~~-- 175 (195)
T 1jbk_A 118 ILFIDELHTMVGAGKADGA-----MDAGNMLKPALA---------------RGELHCVGATTLDEYRQYIEKDAALER-- 175 (195)
T ss_dssp EEEEETGGGGTT------C-----CCCHHHHHHHHH---------------TTSCCEEEEECHHHHHHHTTTCHHHHT--
T ss_pred EEEEeCHHHHhccCcccch-----HHHHHHHHHhhc---------------cCCeEEEEeCCHHHHHHHHhcCHHHHH--
Confidence 9999999999765321111 122234444333 35678999999876 78999999
Q ss_pred cceEEEe--cCCHHHHHHHH
Q 013704 300 RMEKFYW--APTREDRIGVC 317 (438)
Q Consensus 300 Rfd~~i~--lP~~e~R~~Il 317 (438)
||+. +. .|+.++|.+|+
T Consensus 176 r~~~-i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 176 RFQK-VFVAEPSVEDTIAIL 194 (195)
T ss_dssp TEEE-EECCCCCHHHHHTTC
T ss_pred Hhce-eecCCCCHHHHHHHh
Confidence 9985 44 59999998876
No 38
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.64 E-value=3e-15 Score=149.91 Aligned_cols=155 Identities=14% Similarity=0.046 Sum_probs=102.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC--ceEEEeccccccCCC----------------------------------
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESGNA---------------------------------- 200 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~--~~i~vs~~~l~s~~~---------------------------------- 200 (438)
.++.++||+||||||||++|+++|+.++. +++.+++..+.+.+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~ 147 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVI 147 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhh
Confidence 34689999999999999999999999875 788888766444333
Q ss_pred ---------------CChHHHHHHHHHHHHHHHH-h----CCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhc
Q 013704 201 ---------------GEPAKLIRQRYREAADIIK-K----GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 260 (438)
Q Consensus 201 ---------------Ge~~~~ir~~f~~A~~~~~-~----~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld 260 (438)
|+....++..+..+..... . ..|+||||||+|.+.. .....|+.+++
T Consensus 148 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~-------------~~~~~L~~~le 214 (368)
T 3uk6_A 148 NSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDI-------------ESFSFLNRALE 214 (368)
T ss_dssp TC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBH-------------HHHHHHHHHTT
T ss_pred hcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccCh-------------HHHHHHHHHhh
Confidence 2334455666665543222 2 2378999999998842 23355666554
Q ss_pred CCCccccCCccccCCCCCceEEEec-----------CCCCCCCccccCCCcceEEEe-cCCHHHHHHHHHhhhCC--CCC
Q 013704 261 NPTNVQLPGMYNQEENPRVPIIVTG-----------NDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRT--DNV 326 (438)
Q Consensus 261 ~~~~v~ldg~~~~~~~~~v~VI~TT-----------N~~~~Ld~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~--~~v 326 (438)
.....+++++|. |.+..++++|++ ||..+.. .|+.+++.+|++..+.. ..+
T Consensus 215 -------------~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~i~~~~~~~~e~~~il~~~~~~~~~~~ 279 (368)
T 3uk6_A 215 -------------SDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLIVSTTPYSEKDTKQILRIRCEEEDVEM 279 (368)
T ss_dssp -------------CTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEEEEECCCCHHHHHHHHHHHHHHTTCCB
T ss_pred -------------CcCCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 222334333333 457889999999 9977433 48999999999977754 345
Q ss_pred CHHHHHHHHccCC
Q 013704 327 PKEDIVKLVDTFP 339 (438)
Q Consensus 327 ~~~~la~l~~~~s 339 (438)
+.+.+..++....
T Consensus 280 ~~~~l~~l~~~~~ 292 (368)
T 3uk6_A 280 SEDAYTVLTRIGL 292 (368)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc
Confidence 5555555554443
No 39
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.63 E-value=1.2e-16 Score=161.21 Aligned_cols=160 Identities=18% Similarity=0.244 Sum_probs=110.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccC-CCCCh-HHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG-NAGEP-AKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~-~~Ge~-~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l 234 (438)
.++.++||+||||||||++|++||+.++.+|+.++++.+... |.|.. ...++.+|+.+...++...++||||||+|++
T Consensus 49 ~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l 128 (363)
T 3hws_A 49 LGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKI 128 (363)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhh
Confidence 356899999999999999999999999999999999987743 66764 5566777766522222556899999999999
Q ss_pred ccCCCCC-ccccchhHHHHHHHHHhhcCCCccccC---Cc------cccCCCCCceEEEecCCC----------CC----
Q 013704 235 AGRMGGT-TQYTVNNQMVNATLMNIADNPTNVQLP---GM------YNQEENPRVPIIVTGNDF----------ST---- 290 (438)
Q Consensus 235 ~~~r~~~-~~~~~~~~~v~~~Ll~Lld~~~~v~ld---g~------~~~~~~~~v~VI~TTN~~----------~~---- 290 (438)
...+.+. .......+.+.+.|+++++ ...+.+. |. ..-....++++|+|+|.. ..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~Ll~~le-g~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~ 207 (363)
T 3hws_A 129 SRKSDNPSITRDVSGEGVQQALLKLIE-GTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGI 207 (363)
T ss_dssp CCCSSCC---CHHHHHHHHHHHHHHHH-CC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC--
T ss_pred cccccccccccccchHHHHHHHHHHhc-CceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccC
Confidence 8765432 1223334557888888887 2222221 10 001223566677776642 11
Q ss_pred -------------------------------CCccccCCCcceEEEec--CCHHHHHHHHHh
Q 013704 291 -------------------------------LYAPLIRDGRMEKFYWA--PTREDRIGVCSG 319 (438)
Q Consensus 291 -------------------------------Ld~aLlR~GRfd~~i~l--P~~e~R~~Il~~ 319 (438)
+.++|+. ||+.++.+ |+.+++.+|+..
T Consensus 208 gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~pl~~~~~~~I~~~ 267 (363)
T 3hws_A 208 GFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLNELSEEALIQILKE 267 (363)
T ss_dssp ----------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECCCCCHHHHHHHHHS
T ss_pred CccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecCCCCHHHHHHHHHH
Confidence 6788887 99999874 899999999875
No 40
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.63 E-value=7.3e-15 Score=145.74 Aligned_cols=159 Identities=13% Similarity=0.081 Sum_probs=112.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~ 236 (438)
..+.++||+||||||||++|+++|+.++.+++.++++.+. ....+...+.. ...+++|||||+|.+..
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~------~~~~~~~~~~~------~~~~~vl~lDEi~~l~~ 120 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE------KSGDLAAILTN------LSEGDILFIDEIHRLSP 120 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC------SHHHHHHHHHT------CCTTCEEEEETGGGCCH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc------chhHHHHHHHh------ccCCCEEEEechhhcCH
Confidence 3456799999999999999999999999999999987653 12333333331 46789999999998842
Q ss_pred CCCCCccccchhHHHHHHHHHhhcCCCccccCCc-----cccCCCCCceEEEecCCCCCCCccccCCCcceEEEec--CC
Q 013704 237 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM-----YNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 309 (438)
Q Consensus 237 ~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~-----~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~l--P~ 309 (438)
.....|+..+++.....+.+. ......+++.+|+|||+...++++|++ ||+..+.+ |+
T Consensus 121 -------------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~ 185 (338)
T 3pfi_A 121 -------------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYK 185 (338)
T ss_dssp -------------HHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCC
T ss_pred -------------HHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcC
Confidence 233455555553221111110 000122368899999999999999999 99888884 89
Q ss_pred HHHHHHHHHhhhCCCC--CCHHHHHHHHccCCcch
Q 013704 310 REDRIGVCSGIFRTDN--VPKEDIVKLVDTFPGQS 342 (438)
Q Consensus 310 ~e~R~~Il~~~l~~~~--v~~~~la~l~~~~sgad 342 (438)
.+++..+++.+....+ ++.+.+..++..++|..
T Consensus 186 ~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~ 220 (338)
T 3pfi_A 186 DSELALILQKAALKLNKTCEEKAALEIAKRSRSTP 220 (338)
T ss_dssp HHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCH
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCH
Confidence 9999999998776544 56677778888666543
No 41
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.59 E-value=1.7e-14 Score=142.77 Aligned_cols=162 Identities=16% Similarity=0.133 Sum_probs=103.4
Q ss_pred HHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCc
Q 013704 147 TKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 223 (438)
Q Consensus 147 ~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p 223 (438)
++.....++ ..+.+++||||||||||++|+++++++ +.+++++++.++...+.+.........|... ...+
T Consensus 26 ~~~~~~~~~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 99 (324)
T 1l8q_A 26 VKEALENLG-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNM-----YKSV 99 (324)
T ss_dssp HHHHHHTTT-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHH-----HHTC
T ss_pred HHHHHhCcC-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHH-----hcCC
Confidence 444444443 346789999999999999999999998 8999999987764322211111111122221 2348
Q ss_pred eeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC---CCCccccCCCc
Q 013704 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS---TLYAPLIRDGR 300 (438)
Q Consensus 224 ~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~---~Ld~aLlR~GR 300 (438)
++|||||++.+...+. . .+.+...+..+.+ ....+||+++|.+. .++++|++ |
T Consensus 100 ~vL~iDEi~~l~~~~~--~-----~~~l~~~l~~~~~---------------~~~~iii~~~~~~~~l~~l~~~L~s--R 155 (324)
T 1l8q_A 100 DLLLLDDVQFLSGKER--T-----QIEFFHIFNTLYL---------------LEKQIILASDRHPQKLDGVSDRLVS--R 155 (324)
T ss_dssp SEEEEECGGGGTTCHH--H-----HHHHHHHHHHHHH---------------TTCEEEEEESSCGGGCTTSCHHHHH--H
T ss_pred CEEEEcCcccccCChH--H-----HHHHHHHHHHHHH---------------CCCeEEEEecCChHHHHHhhhHhhh--c
Confidence 9999999999864311 1 1122222222121 12344555555555 68999999 8
Q ss_pred ce--EEEec-CCHHHHHHHHHhhhCC--CCCCHHHHHHHHccC
Q 013704 301 ME--KFYWA-PTREDRIGVCSGIFRT--DNVPKEDIVKLVDTF 338 (438)
Q Consensus 301 fd--~~i~l-P~~e~R~~Il~~~l~~--~~v~~~~la~l~~~~ 338 (438)
|. ..+.+ |+.++|.+|++..+.. ..++.+.+..++...
T Consensus 156 ~~~~~~i~l~~~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~ 198 (324)
T 1l8q_A 156 FEGGILVEIELDNKTRFKIIKEKLKEFNLELRKEVIDYLLENT 198 (324)
T ss_dssp HHTSEEEECCCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC
T ss_pred ccCceEEEeCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC
Confidence 85 56665 4799999999987763 456677777777777
No 42
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.59 E-value=1e-14 Score=152.58 Aligned_cols=142 Identities=18% Similarity=0.188 Sum_probs=97.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEE
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 227 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l----------g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILf 227 (438)
.+.++||+||||||||++|+++|+.+ +.+++.++++ ..|.|+.+..++.+|..+. ...|+|||
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~----~~~~~iLf 272 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIR----QAGNIILF 272 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHH----TCCCCEEE
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHH----hcCCeEEE
Confidence 35689999999999999999999996 7888888877 6788888888899999886 78899999
Q ss_pred eccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC-----CCCccccCCCcce
Q 013704 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGRME 302 (438)
Q Consensus 228 IDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~-----~Ld~aLlR~GRfd 302 (438)
|| +. . ...+.|+..+. ...+.+|+|||... .++++|+| ||.
T Consensus 273 iD------~~-----~------~a~~~L~~~L~---------------~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~ 318 (468)
T 3pxg_A 273 ID------AA-----I------DASNILKPSLA---------------RGELQCIGATTLDEYRKYIEKDAALER--RFQ 318 (468)
T ss_dssp EC------C-------------------CCCTT---------------SSSCEEEEECCTTTTHHHHTTCSHHHH--SEE
T ss_pred Ee------Cc-----h------hHHHHHHHhhc---------------CCCEEEEecCCHHHHHHHhhcCHHHHH--hCc
Confidence 99 11 1 11233333222 45789999999987 69999999 998
Q ss_pred EEEe-cCCHHHHHHHHHhhhCC----CC--CCHH---HHHHHHccCCc
Q 013704 303 KFYW-APTREDRIGVCSGIFRT----DN--VPKE---DIVKLVDTFPG 340 (438)
Q Consensus 303 ~~i~-lP~~e~R~~Il~~~l~~----~~--v~~~---~la~l~~~~sg 340 (438)
.+.. .|+.+++.+|++.+... .+ ++.+ .++.++.+|.+
T Consensus 319 ~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~ 366 (468)
T 3pxg_A 319 PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYIS 366 (468)
T ss_dssp EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSC
T ss_pred cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhc
Confidence 6333 59999999999977654 33 4443 35555666544
No 43
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.58 E-value=2.3e-14 Score=140.03 Aligned_cols=176 Identities=15% Similarity=0.140 Sum_probs=110.6
Q ss_pred hHHHHHHHHHHhhhcCCCCCCC-cEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCC------------CC
Q 013704 138 FMDKVVVHITKNFLNLPNVKVP-LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN------------AG 201 (438)
Q Consensus 138 ~~d~~~~~i~k~~l~~~~~~~p-~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~------------~G 201 (438)
.+..+...+.+..........| ..+||+||||||||++|+++|+.+ +.+++.++++.+.... .|
T Consensus 25 ~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 104 (311)
T 4fcw_A 25 AIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVG 104 (311)
T ss_dssp HHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTT
T ss_pred HHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCcccc
Confidence 3334444444433332333334 479999999999999999999997 5568888887654321 11
Q ss_pred ChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceE
Q 013704 202 EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 281 (438)
Q Consensus 202 e~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~V 281 (438)
... ...+..+ +.....++|||||+|.+.. .+...|+.++++.....-.+. .....++++
T Consensus 105 ~~~---~~~~~~~---~~~~~~~vl~lDEi~~l~~-------------~~~~~Ll~~le~~~~~~~~~~--~~~~~~~ii 163 (311)
T 4fcw_A 105 YEE---GGQLTEA---VRRRPYSVILFDAIEKAHP-------------DVFNILLQMLDDGRLTDSHGR--TVDFRNTVI 163 (311)
T ss_dssp TTT---CCHHHHH---HHHCSSEEEEEETGGGSCH-------------HHHHHHHHHHHHSEEECTTSC--EEECTTEEE
T ss_pred ccc---cchHHHH---HHhCCCeEEEEeChhhcCH-------------HHHHHHHHHHhcCEEEcCCCC--EEECCCcEE
Confidence 110 0112222 1255579999999998732 344567776663222110010 112247779
Q ss_pred EEecCC--------------------------CCCCCccccCCCcceEEEec--CCHHHHHHHHHhhhCC----------
Q 013704 282 IVTGND--------------------------FSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRT---------- 323 (438)
Q Consensus 282 I~TTN~--------------------------~~~Ld~aLlR~GRfd~~i~l--P~~e~R~~Il~~~l~~---------- 323 (438)
|+|||. ...++++|++ ||+..+.+ |+.+++..|++.++..
T Consensus 164 I~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~ 241 (311)
T 4fcw_A 164 IMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRI 241 (311)
T ss_dssp EEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTC
T ss_pred EEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999998 5578889998 99887773 8899999999876643
Q ss_pred -CCCCHHHHHHHHc
Q 013704 324 -DNVPKEDIVKLVD 336 (438)
Q Consensus 324 -~~v~~~~la~l~~ 336 (438)
..++.+.+..+.+
T Consensus 242 ~~~~~~~~~~~l~~ 255 (311)
T 4fcw_A 242 SLELTEAAKDFLAE 255 (311)
T ss_dssp EEEECHHHHHHHHH
T ss_pred EEEeCHHHHHHHHH
Confidence 2355666666665
No 44
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.57 E-value=2.2e-14 Score=141.57 Aligned_cols=149 Identities=17% Similarity=0.276 Sum_probs=104.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHH-hCCceeEEeccccccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGA 235 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~-~~~p~ILfIDEiD~l~ 235 (438)
..|..+|++||||||||++|+++|++++.+++.++++... ...++..+........ ...+.||||||+|.+.
T Consensus 46 ~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 46 KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSG 118 (324)
T ss_dssp CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGG
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccC
Confidence 5567889999999999999999999999999999986532 4455655554331111 2378999999999885
Q ss_pred cCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCHHHH
Q 013704 236 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 313 (438)
Q Consensus 236 ~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e~R 313 (438)
+. .....|+.+++ ....++.+|+|||++..++++|++ ||.. +. .|+.++|
T Consensus 119 ~~------------~~~~~L~~~le-------------~~~~~~~iI~~~n~~~~l~~~l~s--R~~~-i~~~~~~~~e~ 170 (324)
T 3u61_B 119 LA------------ESQRHLRSFME-------------AYSSNCSIIITANNIDGIIKPLQS--RCRV-ITFGQPTDEDK 170 (324)
T ss_dssp GH------------HHHHHHHHHHH-------------HHGGGCEEEEEESSGGGSCTTHHH--HSEE-EECCCCCHHHH
T ss_pred cH------------HHHHHHHHHHH-------------hCCCCcEEEEEeCCccccCHHHHh--hCcE-EEeCCCCHHHH
Confidence 21 12345555444 223568899999999999999999 8864 44 4899998
Q ss_pred HHHHHhhh-------CC--CCCCH-HHHHHHHccCCc
Q 013704 314 IGVCSGIF-------RT--DNVPK-EDIVKLVDTFPG 340 (438)
Q Consensus 314 ~~Il~~~l-------~~--~~v~~-~~la~l~~~~sg 340 (438)
.+|++.++ .. ..++. +.+..++....|
T Consensus 171 ~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g 207 (324)
T 3u61_B 171 IEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP 207 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC
Confidence 77665332 22 33444 556666665443
No 45
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.57 E-value=8.6e-15 Score=146.08 Aligned_cols=137 Identities=11% Similarity=0.040 Sum_probs=96.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEEeccccccC----------------CCCChHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESG----------------NAGEPAKLIRQR 210 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l----------g~~~i~vs~~~l~s~----------------~~Ge~~~~ir~~ 210 (438)
..|.+++||||||||||++++++++++ ...+++++|..+.+. ..++....++..
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 467899999999999999999999998 356788888665432 124456667777
Q ss_pred HHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCC
Q 013704 211 YREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 290 (438)
Q Consensus 211 f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~ 290 (438)
|.... -....++||||||+|.+. . + . .|.++++ |......++.||+++|..+.
T Consensus 123 f~~~~--~~~~~~~ii~lDE~d~l~-~-----q------~---~L~~l~~----------~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 123 ITNVP--KAKKRKTLILIQNPENLL-S-----E------K---ILQYFEK----------WISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHSC--GGGSCEEEEEEECCSSSC-C-----T------H---HHHHHHH----------HHHCSSCCEEEEEECCSSCC
T ss_pred HHHhh--hccCCceEEEEecHHHhh-c-----c------h---HHHHHHh----------cccccCCcEEEEEEecCccc
Confidence 77531 015678999999999997 1 2 2 3444443 33345678999999999875
Q ss_pred ----CCccccCCCcce-EEEec--CCHHHHHHHHHhhhC
Q 013704 291 ----LYAPLIRDGRME-KFYWA--PTREDRIGVCSGIFR 322 (438)
Q Consensus 291 ----Ld~aLlR~GRfd-~~i~l--P~~e~R~~Il~~~l~ 322 (438)
|++++++ ||. ..+.+ ++.++..+|++..+.
T Consensus 176 ~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 176 IREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 3445566 786 34554 799999999985543
No 46
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.57 E-value=1.6e-14 Score=141.97 Aligned_cols=159 Identities=17% Similarity=0.142 Sum_probs=108.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccC
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 237 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~ 237 (438)
.+.++||+||||||||++|++++++++.+++.++++.+.. ...+...|..+ ...+++|||||+|.+...
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~------~~~l~~~l~~~-----~~~~~~l~lDEi~~l~~~ 105 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------PGDLAAILANS-----LEEGDILFIDEIHRLSRQ 105 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS------HHHHHHHHTTT-----CCTTCEEEETTTTSCCHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC------hHHHHHHHHHh-----ccCCCEEEEECCcccccc
Confidence 4578999999999999999999999999999998876532 22333333321 357899999999987532
Q ss_pred CCCCccccchhHHHHHHHHHhhcCCCccccCCc-cc----cCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCH
Q 013704 238 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM-YN----QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 310 (438)
Q Consensus 238 r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~-~~----~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~ 310 (438)
....|+.++++.....+.+. .. .....++.+|+|||++..++++|++ ||+..+. .|+.
T Consensus 106 -------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~ 170 (324)
T 1hqc_A 106 -------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTP 170 (324)
T ss_dssp -------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCH
T ss_pred -------------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCH
Confidence 12334444442111111111 00 0012467899999999999999998 9976666 4899
Q ss_pred HHHHHHHHhhhCCC--CCCHHHHHHHHccCCcch
Q 013704 311 EDRIGVCSGIFRTD--NVPKEDIVKLVDTFPGQS 342 (438)
Q Consensus 311 e~R~~Il~~~l~~~--~v~~~~la~l~~~~sgad 342 (438)
+++.++++.++... .++.+.+..+.....|..
T Consensus 171 ~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~ 204 (324)
T 1hqc_A 171 EELAQGVMRDARLLGVRITEEAALEIGRRSRGTM 204 (324)
T ss_dssp HHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCH
Confidence 99999998877643 456667777777665543
No 47
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.57 E-value=7.4e-14 Score=153.71 Aligned_cols=140 Identities=15% Similarity=0.171 Sum_probs=104.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEEeccccc--cCCCCChHHHHHHHHHHHHHHHHhCCcee
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCC 225 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l----------g~~~i~vs~~~l~--s~~~Ge~~~~ir~~f~~A~~~~~~~~p~I 225 (438)
.+.++||+||||||||++|+++|+.+ +..++.++.+.+. .++.|+.+..++.+|+.+. ...++|
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~----~~~~~i 281 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLE----QDTNSI 281 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHS----SSSCEE
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHH----hcCCeE
Confidence 56789999999999999999999986 6677778777766 4688999999999998775 667899
Q ss_pred EEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCC-----CCCCccccCCCc
Q 013704 226 LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-----STLYAPLIRDGR 300 (438)
Q Consensus 226 LfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~-----~~Ld~aLlR~GR 300 (438)
|||||+|.+.+..... . ....+...|..+++ ..++.+|++||.+ ..+|++|.| |
T Consensus 282 L~IDEi~~l~~~~~~~-~---~~~~~~~~L~~~l~---------------~~~~~~I~at~~~~~~~~~~~d~aL~~--R 340 (758)
T 1r6b_X 282 LFIDEIHTIIGAGAAS-G---GQVDAANLIKPLLS---------------SGKIRVIGSTTYQEFSNIFEKDRALAR--R 340 (758)
T ss_dssp EEETTTTTTTTSCCSS-S---CHHHHHHHHSSCSS---------------SCCCEEEEEECHHHHHCCCCCTTSSGG--G
T ss_pred EEEechHHHhhcCCCC-c---chHHHHHHHHHHHh---------------CCCeEEEEEeCchHHhhhhhcCHHHHh--C
Confidence 9999999998764321 1 11223333433222 4678899999864 367899999 9
Q ss_pred ceEEEe-cCCHHHHHHHHHhhhC
Q 013704 301 MEKFYW-APTREDRIGVCSGIFR 322 (438)
Q Consensus 301 fd~~i~-lP~~e~R~~Il~~~l~ 322 (438)
|+.+.. .|+.++|.+|++.+..
T Consensus 341 f~~i~v~~p~~~e~~~il~~l~~ 363 (758)
T 1r6b_X 341 FQKIDITEPSIEETVQIINGLKP 363 (758)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHH
T ss_pred ceEEEcCCCCHHHHHHHHHHHHH
Confidence 985333 5999999999986653
No 48
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.56 E-value=6.3e-15 Score=131.72 Aligned_cols=126 Identities=14% Similarity=0.132 Sum_probs=88.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEEeccccc--cCCCCChHHHHHHHHHHHHHHHHhCCce
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMC 224 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l----------g~~~i~vs~~~l~--s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ 224 (438)
..+.+++|+||||||||++|+++++++ +.+++.+++..+. ..+.+.....++.++..+. +...|+
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 117 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQ---DAEGQV 117 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHH---HTTTSE
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHH---hcCCce
Confidence 346789999999999999999999997 7788888876654 2344444555666666543 134789
Q ss_pred eEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC-----CCCccccCCC
Q 013704 225 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDG 299 (438)
Q Consensus 225 ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~-----~Ld~aLlR~G 299 (438)
+|||||+|.+.+.+.. .+. ...+...|..+++ ..++.+|++||.+. .+++++++
T Consensus 118 vl~iDe~~~l~~~~~~-~~~---~~~~~~~l~~~~~---------------~~~~~ii~~~~~~~~~~~~~~~~~l~~-- 176 (187)
T 2p65_A 118 VMFIDEIHTVVGAGAV-AEG---ALDAGNILKPMLA---------------RGELRCIGATTVSEYRQFIEKDKALER-- 176 (187)
T ss_dssp EEEETTGGGGSSSSSS-CTT---SCCTHHHHHHHHH---------------TTCSCEEEEECHHHHHHHTTTCHHHHH--
T ss_pred EEEEeCHHHhcccccc-ccc---chHHHHHHHHHHh---------------cCCeeEEEecCHHHHHHHHhccHHHHH--
Confidence 9999999999755331 110 1123344444443 35688999999875 68999999
Q ss_pred cceEEEec
Q 013704 300 RMEKFYWA 307 (438)
Q Consensus 300 Rfd~~i~l 307 (438)
||+. +.+
T Consensus 177 R~~~-i~i 183 (187)
T 2p65_A 177 RFQQ-ILV 183 (187)
T ss_dssp HEEE-EEC
T ss_pred hcCc-ccC
Confidence 9986 553
No 49
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.56 E-value=2.8e-14 Score=148.57 Aligned_cols=144 Identities=19% Similarity=0.242 Sum_probs=105.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCC
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~ 239 (438)
.++|||||||||||++|++|++.++.+++.+++.. ...+.++.++..+........++||||||+|.+....
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~-------~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~- 122 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVT-------SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQ- 122 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT-------CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc-------CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH-
Confidence 68999999999999999999999999999998653 2356788888887655556789999999999885431
Q ss_pred CCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEec--CCCCCCCccccCCCcceEEEe-cCCHHHHHHH
Q 013704 240 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW-APTREDRIGV 316 (438)
Q Consensus 240 ~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TT--N~~~~Ld~aLlR~GRfd~~i~-lP~~e~R~~I 316 (438)
+ ..|+..++ ...+.+|++| |....++++|++ |+..+.. .|+.+++..+
T Consensus 123 ---q---------~~LL~~le---------------~~~v~lI~att~n~~~~l~~aL~s--R~~v~~l~~l~~edi~~i 173 (447)
T 3pvs_A 123 ---Q---------DAFLPHIE---------------DGTITFIGATTENPSFELNSALLS--RARVYLLKSLSTEDIEQV 173 (447)
T ss_dssp --------------CCHHHHH---------------TTSCEEEEEESSCGGGSSCHHHHT--TEEEEECCCCCHHHHHHH
T ss_pred ---H---------HHHHHHHh---------------cCceEEEecCCCCcccccCHHHhC--ceeEEeeCCcCHHHHHHH
Confidence 1 23444444 2456777755 555689999999 8875444 4899999999
Q ss_pred HHhhhCC---------CCCCHHHHHHHHccCCc
Q 013704 317 CSGIFRT---------DNVPKEDIVKLVDTFPG 340 (438)
Q Consensus 317 l~~~l~~---------~~v~~~~la~l~~~~sg 340 (438)
++..+.. ..++.+.+..++..+.|
T Consensus 174 l~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G 206 (447)
T 3pvs_A 174 LTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG 206 (447)
T ss_dssp HHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS
T ss_pred HHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC
Confidence 9877754 23566667777766544
No 50
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.56 E-value=2.1e-14 Score=145.22 Aligned_cols=105 Identities=17% Similarity=0.263 Sum_probs=66.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccc-cCCCCCh-HHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~-s~~~Ge~-~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l 234 (438)
..+.++||+||||||||++|+++|+.++.+++.+++..+. .+|.|+. ...+...+..+...+....++||||||+|.+
T Consensus 70 ~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 149 (376)
T 1um8_A 70 LSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKI 149 (376)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC
T ss_pred cCCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHH
Confidence 3457899999999999999999999999999999998875 4666653 4455555554322222457899999999999
Q ss_pred ccCCCCC-ccccchhHHHHHHHHHhhcC
Q 013704 235 AGRMGGT-TQYTVNNQMVNATLMNIADN 261 (438)
Q Consensus 235 ~~~r~~~-~~~~~~~~~v~~~Ll~Lld~ 261 (438)
...+.+. ...+.....+...|+.+++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~Ll~~le~ 177 (376)
T 1um8_A 150 SRLSENRSITRDVSGEGVQQALLKIVEG 177 (376)
T ss_dssp --------------CHHHHHHHHHHHHC
T ss_pred hhhcCCCceecccchHHHHHHHHHHhhc
Confidence 8764321 11122233467788888873
No 51
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.54 E-value=1.3e-13 Score=125.83 Aligned_cols=145 Identities=19% Similarity=0.220 Sum_probs=98.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh-----CCceEEEeccccccCCCCChHHHHHHHHHHHHHH--HHhCCceeEEeccccc
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADI--IKKGKMCCLFINDLDA 233 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~l-----g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~--~~~~~p~ILfIDEiD~ 233 (438)
.++|+||||||||++++++++++ ...++.++++.... ...++..+...... .....+++|||||+|.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~ 113 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADA 113 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTC------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccC------hHHHHHHHHHHhcccCCCccCceEEEEeChhh
Confidence 49999999999999999999985 45577777654321 22333333322100 0026789999999998
Q ss_pred cccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCCHH
Q 013704 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 311 (438)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e 311 (438)
+... ....|+.+++ ....++.+|+|||.+..+++++.+ ||. .+. .|+.+
T Consensus 114 l~~~-------------~~~~l~~~l~-------------~~~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~ 164 (226)
T 2chg_A 114 LTAD-------------AQAALRRTME-------------MYSKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKE 164 (226)
T ss_dssp SCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHH
T ss_pred cCHH-------------HHHHHHHHHH-------------hcCCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHH
Confidence 7432 1234555444 234677899999999999999999 887 455 37899
Q ss_pred HHHHHHHhhhCC--CCCCHHHHHHHHccCCc
Q 013704 312 DRIGVCSGIFRT--DNVPKEDIVKLVDTFPG 340 (438)
Q Consensus 312 ~R~~Il~~~l~~--~~v~~~~la~l~~~~sg 340 (438)
+..++++..+.. ..++.+.+..+...+.|
T Consensus 165 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 195 (226)
T 2chg_A 165 AMKKRLLEICEKEGVKITEDGLEALIYISGG 195 (226)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 999999877753 34566666666655444
No 52
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.54 E-value=1.9e-14 Score=160.74 Aligned_cols=155 Identities=18% Similarity=0.198 Sum_probs=99.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEEeccccc--cCCCCChHHHHHHHHHHHHHHHHh-CCce
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKK-GKMC 224 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l----------g~~~i~vs~~~l~--s~~~Ge~~~~ir~~f~~A~~~~~~-~~p~ 224 (438)
.+.++||+||||||||++|+++|+.+ +.+++.++++.+. .++.|+.+..++.+|..+. . ..|+
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~----~~~~~~ 265 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVV----QSQGEV 265 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHH----TTCSSE
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHH----hcCCCe
Confidence 35678999999999999999999997 8899999998886 5788999999999998775 4 4789
Q ss_pred eEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC----CCCccccCCCc
Q 013704 225 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS----TLYAPLIRDGR 300 (438)
Q Consensus 225 ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~----~Ld~aLlR~GR 300 (438)
||||||+|.+.+.... +. ...+...|..++. ..++.+|++||.++ .++++|+| |
T Consensus 266 iL~IDEi~~l~~~~~~--~g---~~~~~~~L~~~l~---------------~~~i~~I~at~~~~~~~~~~d~aL~r--R 323 (854)
T 1qvr_A 266 ILFIDELHTVVGAGKA--EG---AVDAGNMLKPALA---------------RGELRLIGATTLDEYREIEKDPALER--R 323 (854)
T ss_dssp EEEECCC------------------------HHHHH---------------TTCCCEEEEECHHHHHHHTTCTTTCS--C
T ss_pred EEEEecHHHHhccCCc--cc---hHHHHHHHHHHHh---------------CCCeEEEEecCchHHhhhccCHHHHh--C
Confidence 9999999999865331 11 1223334444443 35678999998774 58999999 9
Q ss_pred ceEEEe-cCCHHHHHHHHHhhhC------CCCCCHH---HHHHHHccC
Q 013704 301 MEKFYW-APTREDRIGVCSGIFR------TDNVPKE---DIVKLVDTF 338 (438)
Q Consensus 301 fd~~i~-lP~~e~R~~Il~~~l~------~~~v~~~---~la~l~~~~ 338 (438)
|+.+.. .|+.+++.+|++.++. ...++.+ .++.++.+|
T Consensus 324 f~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~ 371 (854)
T 1qvr_A 324 FQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRY 371 (854)
T ss_dssp CCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhh
Confidence 987433 5999999999986654 2233444 355555554
No 53
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.52 E-value=6e-14 Score=154.66 Aligned_cols=125 Identities=16% Similarity=0.140 Sum_probs=89.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeE
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL 226 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l----------g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL 226 (438)
..+.++||+||||||||++|+++|+.+ +.+++.+++ ..+|.|+.+..++.+|..+. ...|+||
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~----~~~~~iL 271 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIR----QAGNIIL 271 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHH----TCCCCEE
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHHH----hcCCEEE
Confidence 345679999999999999999999997 788887777 56788999999999999887 7899999
Q ss_pred EeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC-----CCCccccCCCcc
Q 013704 227 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGRM 301 (438)
Q Consensus 227 fIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~-----~Ld~aLlR~GRf 301 (438)
||| +. . ...+.|+..+ ....+.+|+|||... .+|++|+| ||
T Consensus 272 fiD------~~-----~------~~~~~L~~~l---------------~~~~v~~I~at~~~~~~~~~~~d~al~r--Rf 317 (758)
T 3pxi_A 272 FID------AA-----I------DASNILKPSL---------------ARGELQCIGATTLDEYRKYIEKDAALER--RF 317 (758)
T ss_dssp EEC------C-------------------CCCT---------------TSSSCEEEEECCTTTTHHHHTTCSHHHH--SE
T ss_pred EEc------Cc-----h------hHHHHHHHHH---------------hcCCEEEEeCCChHHHHHHhhccHHHHh--hC
Confidence 999 11 1 1112333322 246789999999988 79999999 99
Q ss_pred eEEEe--cCCHHHHHHHHHhhhCC
Q 013704 302 EKFYW--APTREDRIGVCSGIFRT 323 (438)
Q Consensus 302 d~~i~--lP~~e~R~~Il~~~l~~ 323 (438)
.. ++ .|+.+++.+|++.+...
T Consensus 318 ~~-i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 318 QP-IQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp EE-EECCCCCHHHHHHHHHHTTTT
T ss_pred cE-EEeCCCCHHHHHHHHHHHHHH
Confidence 55 55 59999999999976654
No 54
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.52 E-value=2.3e-13 Score=150.08 Aligned_cols=155 Identities=12% Similarity=0.143 Sum_probs=107.4
Q ss_pred CCCc-EEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 013704 157 KVPL-ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (438)
Q Consensus 157 ~~p~-glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (438)
..|. .+||+||||||||++|+++|+.+ +.+++.++++++...+.... .. ++... +...++||||||+|
T Consensus 518 ~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~-~~---l~~~~----~~~~~~vl~lDEi~ 589 (758)
T 3pxi_A 518 KRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSG-GQ---LTEKV----RRKPYSVVLLDAIE 589 (758)
T ss_dssp TSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHH----HHCSSSEEEEECGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccccc-ch---hhHHH----HhCCCeEEEEeCcc
Confidence 4454 69999999999999999999997 78899999999887776651 11 22222 25678999999999
Q ss_pred ccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCC------------CCccccCCCc
Q 013704 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST------------LYAPLIRDGR 300 (438)
Q Consensus 233 ~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~------------Ld~aLlR~GR 300 (438)
.+.+ .+...|++++++-......|. .....++.||+|||.+.. +.|+|+. |
T Consensus 590 ~~~~-------------~~~~~Ll~~le~g~~~~~~g~--~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--R 652 (758)
T 3pxi_A 590 KAHP-------------DVFNILLQVLEDGRLTDSKGR--TVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--R 652 (758)
T ss_dssp GSCH-------------HHHHHHHHHHHHSBCC-------CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--T
T ss_pred ccCH-------------HHHHHHHHHhccCeEEcCCCC--EeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--h
Confidence 7732 455777787773222211121 123467899999997654 7888888 9
Q ss_pred ceEEEec--CCHHHHHHHHHhhhCC-----------CCCCHHHHHHHHc
Q 013704 301 MEKFYWA--PTREDRIGVCSGIFRT-----------DNVPKEDIVKLVD 336 (438)
Q Consensus 301 fd~~i~l--P~~e~R~~Il~~~l~~-----------~~v~~~~la~l~~ 336 (438)
|+..+.+ |+.+++.+|++.++.. ..++.+.+..+++
T Consensus 653 l~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~ 701 (758)
T 3pxi_A 653 IDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAE 701 (758)
T ss_dssp SSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHG
T ss_pred CCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHH
Confidence 9887775 7899999998865532 2345555666654
No 55
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.51 E-value=5.8e-14 Score=145.80 Aligned_cols=166 Identities=17% Similarity=0.249 Sum_probs=103.6
Q ss_pred HHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCceEEEeccccccCCCCChHHHHHHHHHHHHHHHH
Q 013704 145 HITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 219 (438)
Q Consensus 145 ~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~l-----g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~ 219 (438)
..++.....++. +..++||||||||||+||++|++++ +.+++++++..+...+.+.........|....
T Consensus 118 ~~~~~~a~~~~~--~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~---- 191 (440)
T 2z4s_A 118 HAALEVAKHPGR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKY---- 191 (440)
T ss_dssp HHHHHHHHSTTS--SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHH----
T ss_pred HHHHHHHhCCCC--CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHh----
Confidence 334444444442 7789999999999999999999998 88899999876542211100000001122111
Q ss_pred hCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCC-CCC---CCccc
Q 013704 220 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND-FST---LYAPL 295 (438)
Q Consensus 220 ~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~-~~~---Ld~aL 295 (438)
...++||||||++.+.+... .+ ..+..++..+.+ .+..||+||++ +.. ++++|
T Consensus 192 ~~~~~vL~IDEi~~l~~~~~--~q-----~~l~~~l~~l~~----------------~~~~iIitt~~~~~~l~~l~~~L 248 (440)
T 2z4s_A 192 RKKVDILLIDDVQFLIGKTG--VQ-----TELFHTFNELHD----------------SGKQIVICSDREPQKLSEFQDRL 248 (440)
T ss_dssp TTTCSEEEEECGGGGSSCHH--HH-----HHHHHHHHHHHT----------------TTCEEEEEESSCGGGCSSCCHHH
T ss_pred cCCCCEEEEeCcccccCChH--HH-----HHHHHHHHHHHH----------------CCCeEEEEECCCHHHHHHHHHHH
Confidence 23799999999999865311 11 122233322111 23445556654 444 88999
Q ss_pred cCCCcce--EEEe--cCCHHHHHHHHHhhhCC--CCCCHHHHHHHHccCCcc
Q 013704 296 IRDGRME--KFYW--APTREDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQ 341 (438)
Q Consensus 296 lR~GRfd--~~i~--lP~~e~R~~Il~~~l~~--~~v~~~~la~l~~~~sga 341 (438)
++ ||. ..+. .|+.++|.+|++..+.. ..++.+.+..++..+.|-
T Consensus 249 ~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn 298 (440)
T 2z4s_A 249 VS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDN 298 (440)
T ss_dssp HH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSC
T ss_pred Hh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC
Confidence 99 885 4555 59999999999977653 345666677777766653
No 56
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.51 E-value=8.8e-14 Score=153.12 Aligned_cols=142 Identities=16% Similarity=0.190 Sum_probs=99.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccC-----CCCChHHHH-----HHHHHHHHHHHHhCCceeEEec
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG-----NAGEPAKLI-----RQRYREAADIIKKGKMCCLFIN 229 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~-----~~Ge~~~~i-----r~~f~~A~~~~~~~~p~ILfID 229 (438)
..+||+||||||||++|+++|+.++.+++.++++++... ..|.+...+ ..+... ++...++|||||
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~----~~~~~~~vl~lD 564 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDA----VIKHPHAVLLLD 564 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHH----HHHCSSEEEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHH----HHhCCCcEEEEe
Confidence 479999999999999999999999999999999876542 333221111 112222 225668999999
Q ss_pred cccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC--------------------
Q 013704 230 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-------------------- 289 (438)
Q Consensus 230 EiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~-------------------- 289 (438)
|+|++.+ .+...|++++++.....-.|. .....++.||+|||...
T Consensus 565 Ei~~~~~-------------~~~~~Ll~~le~~~~~~~~g~--~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~ 629 (758)
T 1r6b_X 565 EIEKAHP-------------DVFNILLQVMDNGTLTDNNGR--KADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAM 629 (758)
T ss_dssp TGGGSCH-------------HHHHHHHHHHHHSEEEETTTE--EEECTTEEEEEEECSSCC-----------------CH
T ss_pred CccccCH-------------HHHHHHHHHhcCcEEEcCCCC--EEecCCeEEEEecCcchhhhhhcccCccccchHHHHH
Confidence 9997632 356777777773221111111 11236788999999854
Q ss_pred -----CCCccccCCCcceEEEec--CCHHHHHHHHHhhhC
Q 013704 290 -----TLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 322 (438)
Q Consensus 290 -----~Ld~aLlR~GRfd~~i~l--P~~e~R~~Il~~~l~ 322 (438)
.++++|++ ||+..+.+ |+.+++..|++.++.
T Consensus 630 ~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 630 EEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp HHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHH
Confidence 67888998 99988885 789999999987764
No 57
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.47 E-value=4e-13 Score=133.96 Aligned_cols=141 Identities=15% Similarity=0.172 Sum_probs=92.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCceEEEeccccccC----------------CCCChH-HHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG----------------NAGEPA-KLIRQR 210 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l---------g~~~i~vs~~~l~s~----------------~~Ge~~-~~ir~~ 210 (438)
..+..++|+||||||||++++++++++ +..++.+++....+. ..|.+. ..+..+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 121 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERL 121 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 456789999999999999999999998 888899987653321 112222 222223
Q ss_pred HHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCC-CCCceEEEecCCC-
Q 013704 211 YREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE-NPRVPIIVTGNDF- 288 (438)
Q Consensus 211 f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~-~~~v~VI~TTN~~- 288 (438)
+.... ....|++|||||+|.+...+. .+.+...+++..+ ... ..++.+|++||.+
T Consensus 122 ~~~l~---~~~~~~vlilDEi~~l~~~~~--------~~~~l~~l~~~~~------------~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 122 VKRLS---RLRGIYIIVLDEIDFLPKRPG--------GQDLLYRITRINQ------------ELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHT---TSCSEEEEEEETTTHHHHSTT--------HHHHHHHHHHGGG------------CC-----CEEEEECSCST
T ss_pred HHHHh---ccCCeEEEEEccHhhhcccCC--------CChHHHhHhhchh------------hcCCCceEEEEEEECCCc
Confidence 22211 144589999999999865420 1222233333222 011 4678999999988
Q ss_pred --CCCCccccCCCcceE-EEec--CCHHHHHHHHHhhhC
Q 013704 289 --STLYAPLIRDGRMEK-FYWA--PTREDRIGVCSGIFR 322 (438)
Q Consensus 289 --~~Ld~aLlR~GRfd~-~i~l--P~~e~R~~Il~~~l~ 322 (438)
+.+++++.+ ||.. .+.+ |+.+++.+|++..+.
T Consensus 179 ~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 215 (387)
T 2v1u_A 179 FVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAE 215 (387)
T ss_dssp TSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHH
T ss_pred hHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHH
Confidence 788999998 8864 4444 789999999986654
No 58
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=8.4e-14 Score=147.21 Aligned_cols=157 Identities=17% Similarity=0.198 Sum_probs=99.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChH-------HHHHHHHHHHHHH-HHhCCceeEEec
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA-------KLIRQRYREAADI-IKKGKMCCLFIN 229 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~-------~~ir~~f~~A~~~-~~~~~p~ILfID 229 (438)
.+.++||+||||||||++|+++|++++.+++.++++++.+....+.. ..++..|..+... .....++|||||
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliID 155 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMD 155 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEE
Confidence 56899999999999999999999999999999999876532110000 0011222222100 013678999999
Q ss_pred cccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC--CCCccccCCCcceEEEe-
Q 013704 230 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS--TLYAPLIRDGRMEKFYW- 306 (438)
Q Consensus 230 EiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~--~Ld~aLlR~GRfd~~i~- 306 (438)
|+|.+..... .....|.++++ ..+++||++||... .+ +++.| |. ..+.
T Consensus 156 Eid~l~~~~~----------~~l~~L~~~l~---------------~~~~~iIli~~~~~~~~l-~~l~~--r~-~~i~f 206 (516)
T 1sxj_A 156 EVDGMSGGDR----------GGVGQLAQFCR---------------KTSTPLILICNERNLPKM-RPFDR--VC-LDIQF 206 (516)
T ss_dssp SGGGCCTTST----------THHHHHHHHHH---------------HCSSCEEEEESCTTSSTT-GGGTT--TS-EEEEC
T ss_pred CCCccchhhH----------HHHHHHHHHHH---------------hcCCCEEEEEcCCCCccc-hhhHh--ce-EEEEe
Confidence 9999975421 12344555554 23456777776644 33 34555 44 3444
Q ss_pred -cCCHHHHHHHHHhhhCC--CCCCHHHHHHHHccCCcchhH
Q 013704 307 -APTREDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQSID 344 (438)
Q Consensus 307 -lP~~e~R~~Il~~~l~~--~~v~~~~la~l~~~~sgadi~ 344 (438)
.|+.+++.++++.++.. ..++.+.+..+++...| ++.
T Consensus 207 ~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G-diR 246 (516)
T 1sxj_A 207 RRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG-DIR 246 (516)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT-CHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHH
Confidence 59999999999876653 34666677777766544 443
No 59
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.45 E-value=5.3e-13 Score=133.70 Aligned_cols=153 Identities=14% Similarity=0.209 Sum_probs=100.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh-----------CCceEEEeccccc-c-----------------CCCCCh-HHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM-----------GINPIMMSAGELE-S-----------------GNAGEP-AKL 206 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l-----------g~~~i~vs~~~l~-s-----------------~~~Ge~-~~~ 206 (438)
..|..++|+||||||||++|+++++++ +.+++.+++.... + ...|.. ...
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 122 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEY 122 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHH
Confidence 456799999999999999999999997 8999999876532 1 011211 122
Q ss_pred HHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecC
Q 013704 207 IRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN 286 (438)
Q Consensus 207 ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN 286 (438)
+..++. .+ ...++||||||+|.+..... + .+ .+..+++ + . .++.+|+|||
T Consensus 123 ~~~l~~----~l-~~~~~vlilDEi~~l~~~~~---~------~~--~l~~l~~----------~---~-~~~~iI~~t~ 172 (384)
T 2qby_B 123 IDKIKN----GT-RNIRAIIYLDEVDTLVKRRG---G------DI--VLYQLLR----------S---D-ANISVIMISN 172 (384)
T ss_dssp HHHHHH----HH-SSSCEEEEEETTHHHHHSTT---S------HH--HHHHHHT----------S---S-SCEEEEEECS
T ss_pred HHHHHH----Hh-ccCCCEEEEECHHHhccCCC---C------ce--eHHHHhc----------C---C-cceEEEEEEC
Confidence 222222 22 23334999999999865421 1 11 1333333 1 1 6789999999
Q ss_pred CC---CCCCccccCCCcceEEEec--CCHHHHHHHHHhhhC----CCCCCHHH---HHHHHccCCcc
Q 013704 287 DF---STLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR----TDNVPKED---IVKLVDTFPGQ 341 (438)
Q Consensus 287 ~~---~~Ld~aLlR~GRfd~~i~l--P~~e~R~~Il~~~l~----~~~v~~~~---la~l~~~~sga 341 (438)
.+ +.+++++++ ||...+.+ |+.+++.+|++..+. ...++.+. ++..+...+|-
T Consensus 173 ~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~ 237 (384)
T 2qby_B 173 DINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGD 237 (384)
T ss_dssp STTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCC
T ss_pred CCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCC
Confidence 88 678999988 87666664 799999999987654 24455544 44555544453
No 60
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.44 E-value=1.6e-12 Score=119.64 Aligned_cols=148 Identities=14% Similarity=0.156 Sum_probs=95.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCce------------------------EEEeccccccCCCCChHHHHHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGINP------------------------IMMSAGELESGNAGEPAKLIRQRYRE 213 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~~~------------------------i~vs~~~l~s~~~Ge~~~~ir~~f~~ 213 (438)
.|..++|+||||||||++++++++.++... +.+.... ......++.+++.
T Consensus 44 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 117 (250)
T 1njg_A 44 IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDN 117 (250)
T ss_dssp CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHH
Confidence 456899999999999999999999875421 2222110 0122334444443
Q ss_pred HHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCc
Q 013704 214 AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 293 (438)
Q Consensus 214 A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~ 293 (438)
.........+.+|||||+|.+.. .....|+.+++ ....++.+|++||++..+++
T Consensus 118 ~~~~~~~~~~~vlviDe~~~l~~-------------~~~~~l~~~l~-------------~~~~~~~~i~~t~~~~~~~~ 171 (250)
T 1njg_A 118 VQYAPARGRFKVYLIDEVHMLSR-------------HSFNALLKTLE-------------EPPEHVKFLLATTDPQKLPV 171 (250)
T ss_dssp CCCSCSSSSSEEEEEETGGGSCH-------------HHHHHHHHHHH-------------SCCTTEEEEEEESCGGGSCH
T ss_pred hhhchhcCCceEEEEECcccccH-------------HHHHHHHHHHh-------------cCCCceEEEEEeCChHhCCH
Confidence 21000134689999999998732 12344555554 33467889999999999999
Q ss_pred cccCCCcceEEEe--cCCHHHHHHHHHhhhCCC--CCCHHHHHHHHccCCc
Q 013704 294 PLIRDGRMEKFYW--APTREDRIGVCSGIFRTD--NVPKEDIVKLVDTFPG 340 (438)
Q Consensus 294 aLlR~GRfd~~i~--lP~~e~R~~Il~~~l~~~--~v~~~~la~l~~~~sg 340 (438)
++++ |+ ..+. .|+.++..++++..+... .++.+.+..+.+...|
T Consensus 172 ~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G 219 (250)
T 1njg_A 172 TILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 219 (250)
T ss_dssp HHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT
T ss_pred HHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 9988 76 3444 378999999998777543 4455555555555544
No 61
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.41 E-value=1.4e-12 Score=129.06 Aligned_cols=146 Identities=14% Similarity=0.192 Sum_probs=98.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC------CceEEEeccccccCCCCChHHHHHHHHHHHHHH------------HHhCC
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMG------INPIMMSAGELESGNAGEPAKLIRQRYREAADI------------IKKGK 222 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg------~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~------------~~~~~ 222 (438)
++||+||||||||++|+++++.++ ..++.+++++.. ....+++.+...... .....
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDER------GISIVREKVKNFARLTVSKPSKHDLENYPCPP 133 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCC------CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccccc------chHHHHHHHHHHhhhcccccchhhcccCCCCC
Confidence 399999999999999999999864 357777766532 123333333322110 00234
Q ss_pred ceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcce
Q 013704 223 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME 302 (438)
Q Consensus 223 p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd 302 (438)
+.||||||+|.+... ....|+++++ ....++.+|++||.+..+++++++ |+.
T Consensus 134 ~~vliiDE~~~l~~~-------------~~~~Ll~~le-------------~~~~~~~~il~~~~~~~l~~~l~s--R~~ 185 (353)
T 1sxj_D 134 YKIIILDEADSMTAD-------------AQSALRRTME-------------TYSGVTRFCLICNYVTRIIDPLAS--QCS 185 (353)
T ss_dssp CEEEEETTGGGSCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHH--HSE
T ss_pred ceEEEEECCCccCHH-------------HHHHHHHHHH-------------hcCCCceEEEEeCchhhCcchhhc--cCc
Confidence 579999999988532 1244555554 233567788899999999999999 887
Q ss_pred EEEe-cCCHHHHHHHHHhhhCCCC--CCHHHHHHHHccCCc
Q 013704 303 KFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDTFPG 340 (438)
Q Consensus 303 ~~i~-lP~~e~R~~Il~~~l~~~~--v~~~~la~l~~~~sg 340 (438)
.+.. .|+.++...+++..+...+ ++.+.+..+++...|
T Consensus 186 ~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G 226 (353)
T 1sxj_D 186 KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG 226 (353)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS
T ss_pred eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 4333 4788999999988776544 666666666655444
No 62
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.41 E-value=1.3e-12 Score=127.21 Aligned_cols=146 Identities=18% Similarity=0.218 Sum_probs=100.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh-----CCceEEEeccccccCCCCChHHHHHHHHHHHHHHH--HhCCceeEEeccccc
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADII--KKGKMCCLFINDLDA 233 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~l-----g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~--~~~~p~ILfIDEiD~ 233 (438)
.+|||||||||||++|+++++.+ +.+++.++++.... ... ++..+....... ....+.||||||+|.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~vliiDe~~~ 113 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG--IDV----VRHKIKEFARTAPIGGAPFKIIFLDEADA 113 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC--TTT----SSHHHHHHHHSCCSSSCCCEEEEEETGGG
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC--hHH----HHHHHHHHHhcCCCCCCCceEEEEeCCCc
Confidence 39999999999999999999996 44578888765432 111 122222211000 025689999999998
Q ss_pred cccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe-cCCHHH
Q 013704 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRED 312 (438)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~-lP~~e~ 312 (438)
+... ....|+.+++ ....++.+|++||.+..+++++.+ |+..+.. .|+.++
T Consensus 114 l~~~-------------~~~~L~~~le-------------~~~~~~~~i~~~~~~~~l~~~l~s--r~~~i~~~~~~~~~ 165 (319)
T 2chq_A 114 LTAD-------------AQAALRRTME-------------MYSKSCRFILSCNYVSRIIEPIQS--RCAVFRFKPVPKEA 165 (319)
T ss_dssp SCHH-------------HHHTTGGGTS-------------SSSSSEEEEEEESCGGGSCHHHHT--TCEEEECCCCCHHH
T ss_pred CCHH-------------HHHHHHHHHH-------------hcCCCCeEEEEeCChhhcchHHHh--hCeEEEecCCCHHH
Confidence 8431 1233555443 445678899999999999999999 8864333 488999
Q ss_pred HHHHHHhhhCCCC--CCHHHHHHHHccCCc
Q 013704 313 RIGVCSGIFRTDN--VPKEDIVKLVDTFPG 340 (438)
Q Consensus 313 R~~Il~~~l~~~~--v~~~~la~l~~~~sg 340 (438)
+.+++..++...+ ++.+.+..++..+.|
T Consensus 166 ~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G 195 (319)
T 2chq_A 166 MKKRLLEICEKEGVKITEDGLEALIYISGG 195 (319)
T ss_dssp HHHHHHHHHHTTCCCBCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9999998877654 466677777765544
No 63
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.37 E-value=4.3e-12 Score=141.73 Aligned_cols=157 Identities=15% Similarity=0.146 Sum_probs=102.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccC-----CCCChHHHHH----HHHHHHHHHHHhCCceeEE
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGEPAKLIR----QRYREAADIIKKGKMCCLF 227 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~-----~~Ge~~~~ir----~~f~~A~~~~~~~~p~ILf 227 (438)
..+||+||||||||++|+++++.+ +.+++.++++++... ..|.+...+. ..|..+ ++...+++||
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~---~~~~~~~vl~ 665 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEA---VRRRPYSVIL 665 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHH---HHHCSSEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHH---HHhCCCeEEE
Confidence 589999999999999999999998 789999999876543 2221111110 112222 1255679999
Q ss_pred eccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCC--------------------
Q 013704 228 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND-------------------- 287 (438)
Q Consensus 228 IDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~-------------------- 287 (438)
|||+|.+. ..+...|++++++.... ++.-......+++||+|||.
T Consensus 666 lDEi~~l~-------------~~~~~~Ll~~l~~~~~~--~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~ 730 (854)
T 1qvr_A 666 FDEIEKAH-------------PDVFNILLQILDDGRLT--DSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRD 730 (854)
T ss_dssp ESSGGGSC-------------HHHHHHHHHHHTTTEEC--CSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHH
T ss_pred EecccccC-------------HHHHHHHHHHhccCceE--CCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHH
Confidence 99998763 24567788888743322 11101122357789999997
Q ss_pred ------CCCCCccccCCCcceEEEec--CCHHHHHHHHHhhhCC-----------CCCCHHHHHHHHc
Q 013704 288 ------FSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRT-----------DNVPKEDIVKLVD 336 (438)
Q Consensus 288 ------~~~Ld~aLlR~GRfd~~i~l--P~~e~R~~Il~~~l~~-----------~~v~~~~la~l~~ 336 (438)
...+.++|+. ||+..+.+ |+.+++..|++.++.. ..++.+.+..++.
T Consensus 731 ~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~ 796 (854)
T 1qvr_A 731 EVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAE 796 (854)
T ss_dssp HHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHH
T ss_pred HHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHH
Confidence 2346677777 99877763 7899999998866541 2355556666554
No 64
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.36 E-value=2.2e-12 Score=127.71 Aligned_cols=141 Identities=13% Similarity=0.122 Sum_probs=89.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccc-cc-cCCCCChHHHHHHHHHHHHHHHH-hCC---ceeEEeccccc
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE-LE-SGNAGEPAKLIRQRYREAADIIK-KGK---MCCLFINDLDA 233 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~-l~-s~~~Ge~~~~ir~~f~~A~~~~~-~~~---p~ILfIDEiD~ 233 (438)
.++||+||||||||++|+++|+.++.+++.+.+.. +. +...|.. .+........ ... .+||||||+|.
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~------~~~~~~~~~~~~~g~l~~~vl~iDEi~~ 120 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTM------IYNQHKGNFEVKKGPVFSNFILADEVNR 120 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEE------EEETTTTEEEEEECTTCSSEEEEETGGG
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCce------eecCCCCceEeccCcccccEEEEEcccc
Confidence 47999999999999999999999999998887631 10 0000000 0000000000 111 37999999998
Q ss_pred cccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC-----CCCccccCCCcceEEEe--
Q 013704 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGRMEKFYW-- 306 (438)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~-----~Ld~aLlR~GRfd~~i~-- 306 (438)
+.+ .+...|++++++ ..+.++|... ....++.||+|+|..+ .++++|++ ||+..+.
T Consensus 121 ~~~-------------~~~~~Ll~~l~~-~~~~~~g~~~-~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~ 183 (331)
T 2r44_A 121 SPA-------------KVQSALLECMQE-KQVTIGDTTY-PLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLT 183 (331)
T ss_dssp SCH-------------HHHHHHHHHHHH-SEEEETTEEE-ECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECC
T ss_pred CCH-------------HHHHHHHHHHhc-CceeeCCEEE-ECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcC
Confidence 632 233455555552 2233333211 2235677888888543 38999999 9987666
Q ss_pred cCCHHHHHHHHHhhhCC
Q 013704 307 APTREDRIGVCSGIFRT 323 (438)
Q Consensus 307 lP~~e~R~~Il~~~l~~ 323 (438)
.|+.++|.+|++.....
T Consensus 184 ~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 184 YLDKESELEVMRRVSNM 200 (331)
T ss_dssp CCCHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHhcccc
Confidence 59999999999877654
No 65
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.34 E-value=1.2e-11 Score=114.99 Aligned_cols=145 Identities=15% Similarity=0.187 Sum_probs=95.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC---CceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg---~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l 234 (438)
.+..++|+||||||||++|+++++++. .+++.+++.++...+.. .++ ....+.+|||||+|.+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~------~~~~~~vliiDe~~~~ 116 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTA--------LLE------GLEQFDLICIDDVDAV 116 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGG--------GGT------TGGGSSEEEEETGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH--------HHH------hccCCCEEEEeccccc
Confidence 467899999999999999999999864 77888888876643311 111 0345889999999988
Q ss_pred ccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCC-CC---CCCccccCCCcce--EEEe--
Q 013704 235 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND-FS---TLYAPLIRDGRME--KFYW-- 306 (438)
Q Consensus 235 ~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~-~~---~Ld~aLlR~GRfd--~~i~-- 306 (438)
..... ....|+.+++. . .....+.+|+|||. +. .+++++.+ ||. ..+.
T Consensus 117 ~~~~~-----------~~~~l~~~l~~----------~-~~~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~ 172 (242)
T 3bos_A 117 AGHPL-----------WEEAIFDLYNR----------V-AEQKRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQ 172 (242)
T ss_dssp TTCHH-----------HHHHHHHHHHH----------H-HHHCSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECC
T ss_pred cCCHH-----------HHHHHHHHHHH----------H-HHcCCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeC
Confidence 54310 11223333320 0 00123336666654 33 45678888 774 6666
Q ss_pred cCCHHHHHHHHHhhhCC--CCCCHHHHHHHHccCCc
Q 013704 307 APTREDRIGVCSGIFRT--DNVPKEDIVKLVDTFPG 340 (438)
Q Consensus 307 lP~~e~R~~Il~~~l~~--~~v~~~~la~l~~~~sg 340 (438)
.|+.+++.++++.++.. ..++.+.+..+...+.|
T Consensus 173 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 208 (242)
T 3bos_A 173 PMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR 208 (242)
T ss_dssp CCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC
Confidence 48999999999987754 34667777777777655
No 66
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.34 E-value=4.1e-13 Score=133.06 Aligned_cols=145 Identities=17% Similarity=0.229 Sum_probs=82.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEE----Eeccccc---------------------cCCCCChHHHH------H
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIM----MSAGELE---------------------SGNAGEPAKLI------R 208 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~----vs~~~l~---------------------s~~~Ge~~~~i------r 208 (438)
.++||+||||||||++|+++++.++..... +++.... ....+.+...+ +
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 125 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIE 125 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHH
T ss_pred ceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccccccCCCcccccCCCcchhhheeechhh
Confidence 459999999999999999999998631000 0111100 00112222111 1
Q ss_pred HHHHHHH-----HHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCC-ccccCCccccCCCCCceEE
Q 013704 209 QRYREAA-----DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-NVQLPGMYNQEENPRVPII 282 (438)
Q Consensus 209 ~~f~~A~-----~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~-~v~ldg~~~~~~~~~v~VI 282 (438)
..+..+. ..+....+++|||||+|.+... ....|+.++++.. .+...|.. .....++.+|
T Consensus 126 ~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~-------------~~~~Ll~~le~~~~~~~~~g~~-~~~~~~~~li 191 (350)
T 1g8p_A 126 RAISKGEKAFEPGLLARANRGYLYIDECNLLEDH-------------IVDLLLDVAQSGENVVERDGLS-IRHPARFVLV 191 (350)
T ss_dssp HHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH-------------HHHHHHHHHHHSEEEECCTTCC-EEEECCEEEE
T ss_pred hhhcCCceeecCceeeecCCCEEEEeChhhCCHH-------------HHHHHHHHHhcCceEEEecceE-EeeCCceEEE
Confidence 2222210 0011234789999999987432 2345555554211 11222210 0112478899
Q ss_pred EecCCCC-CCCccccCCCcceEEEec--C-CHHHHHHHHHhh
Q 013704 283 VTGNDFS-TLYAPLIRDGRMEKFYWA--P-TREDRIGVCSGI 320 (438)
Q Consensus 283 ~TTN~~~-~Ld~aLlR~GRfd~~i~l--P-~~e~R~~Il~~~ 320 (438)
+|||..+ .++++|++ ||+..+.+ | +.++|.+|++..
T Consensus 192 ~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~ 231 (350)
T 1g8p_A 192 GSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRR 231 (350)
T ss_dssp EEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHH
T ss_pred EEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHH
Confidence 9999755 89999999 99887774 5 688888888653
No 67
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.32 E-value=2.6e-11 Score=120.58 Aligned_cols=151 Identities=15% Similarity=0.248 Sum_probs=95.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh------CCceEEEeccccccC----------------CCCChHHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM------GINPIMMSAGELESG----------------NAGEPAKLIRQRYREA 214 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l------g~~~i~vs~~~l~s~----------------~~Ge~~~~ir~~f~~A 214 (438)
..+..++|+||||||||++++++++.+ +.+++.+++....+. ..|.... .+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~---~~~~~l 119 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIA---ELYRRL 119 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHH---HHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHH---HHHHHH
Confidence 456789999999999999999999998 888999886532210 1122222 222222
Q ss_pred HHHHHh-CCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCC---CC
Q 013704 215 ADIIKK-GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF---ST 290 (438)
Q Consensus 215 ~~~~~~-~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~---~~ 290 (438)
...+.. ..|+||||||++.+..... + .+...|+.++++ ....++.+|++||++ ..
T Consensus 120 ~~~l~~~~~~~vlilDE~~~l~~~~~---~------~~l~~l~~~~~~------------~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 120 VKAVRDYGSQVVIVLDEIDAFVKKYN---D------DILYKLSRINSE------------VNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp HHHHHTCCSCEEEEEETHHHHHHSSC---S------THHHHHHHHHHS------------CCC--EEEEEEESCGGGGGG
T ss_pred HHHHhccCCeEEEEEcChhhhhccCc---C------HHHHHHhhchhh------------cCCCeEEEEEEECCCChHhh
Confidence 222223 4499999999999875421 1 223344443430 134678899999987 46
Q ss_pred CCccccCCCcce-EEEe--cCCHHHHHHHHHhhhC----CCCCCHHHHHH
Q 013704 291 LYAPLIRDGRME-KFYW--APTREDRIGVCSGIFR----TDNVPKEDIVK 333 (438)
Q Consensus 291 Ld~aLlR~GRfd-~~i~--lP~~e~R~~Il~~~l~----~~~v~~~~la~ 333 (438)
+++.+.+ ||. +.+. .++.++..++++..+. ...++.+.+..
T Consensus 179 ~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~ 226 (386)
T 2qby_A 179 LDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKL 226 (386)
T ss_dssp CTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHH
T ss_pred hCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHH
Confidence 7888888 664 3455 4789999999986543 24555554333
No 68
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.32 E-value=1.4e-11 Score=120.27 Aligned_cols=146 Identities=19% Similarity=0.217 Sum_probs=96.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC-----CceEEEeccccccCCCCChHHHHHHHHHHHHHH--HHhCCceeEEeccccc
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELESGNAGEPAKLIRQRYREAADI--IKKGKMCCLFINDLDA 233 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg-----~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~--~~~~~p~ILfIDEiD~ 233 (438)
++||+||||||||++|+++++.+. ..++.+++++... ...++..+...... .....+.+|||||+|.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~ 121 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEADA 121 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH------HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCc------hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCc
Confidence 499999999999999999999963 3466777654321 12222222222100 0025688999999998
Q ss_pred cccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe-cCCHHH
Q 013704 234 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRED 312 (438)
Q Consensus 234 l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~-lP~~e~ 312 (438)
+... ....|+.+++ ....++.+|++||.+..+++++.+ |+..+.. .|+.++
T Consensus 122 l~~~-------------~~~~L~~~le-------------~~~~~~~~i~~~~~~~~l~~~l~s--r~~~~~~~~l~~~~ 173 (327)
T 1iqp_A 122 LTQD-------------AQQALRRTME-------------MFSSNVRFILSCNYSSKIIEPIQS--RCAIFRFRPLRDED 173 (327)
T ss_dssp SCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHH--TEEEEECCCCCHHH
T ss_pred CCHH-------------HHHHHHHHHH-------------hcCCCCeEEEEeCCccccCHHHHh--hCcEEEecCCCHHH
Confidence 8431 2244555554 334677899999999999999998 8764333 378899
Q ss_pred HHHHHHhhhCCCC--CCHHHHHHHHccCCc
Q 013704 313 RIGVCSGIFRTDN--VPKEDIVKLVDTFPG 340 (438)
Q Consensus 313 R~~Il~~~l~~~~--v~~~~la~l~~~~sg 340 (438)
..++++.++...+ ++.+.+..++....|
T Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 203 (327)
T 1iqp_A 174 IAKRLRYIAENEGLELTEEGLQAILYIAEG 203 (327)
T ss_dssp HHHHHHHHHHTTTCEECHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHCCC
Confidence 9999988776554 455555555554443
No 69
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.31 E-value=5.9e-12 Score=120.77 Aligned_cols=131 Identities=18% Similarity=0.231 Sum_probs=81.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC---CceEEEeccccccCCCCChHHHHH-HHH-------HHHH----HHHHhCCc
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIR-QRY-------REAA----DIIKKGKM 223 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg---~~~i~vs~~~l~s~~~Ge~~~~ir-~~f-------~~A~----~~~~~~~p 223 (438)
+..+||+||||||||++|+++++.+. .+++.++++.+.. ..+. .+| ..+. ..+....+
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~-------~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~ 101 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-------NLLDSELFGHEAGAFTGAQKRHPGRFERADG 101 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH-------HHHHHHHHCCC---------CCCCHHHHTTT
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh-------hHHHHHhcCCcccccccccccccchhhhcCC
Confidence 46799999999999999999999874 6899999887631 1111 111 1110 01113457
Q ss_pred eeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCC-------CCCCcccc
Q 013704 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-------STLYAPLI 296 (438)
Q Consensus 224 ~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~-------~~Ld~aLl 296 (438)
++|||||+|.+... +...|+.++++.....+++. .....++.+|+|||.. ..+.++|.
T Consensus 102 ~~l~lDEi~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~--~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~ 166 (265)
T 2bjv_A 102 GTLFLDELATAPMM-------------VQEKLLRVIEYGELERVGGS--QPLQVNVRLVCATNADLPAMVNEGTFRADLL 166 (265)
T ss_dssp SEEEEESGGGSCHH-------------HHHHHHHHHHHCEECCCCC----CEECCCEEEEEESSCHHHHHHHTSSCHHHH
T ss_pred cEEEEechHhcCHH-------------HHHHHHHHHHhCCeecCCCc--ccccCCeEEEEecCcCHHHHHHcCCccHHHH
Confidence 89999999988432 23445555552211111111 1123568899999985 24778888
Q ss_pred CCCcce-EEEecCCHHHH
Q 013704 297 RDGRME-KFYWAPTREDR 313 (438)
Q Consensus 297 R~GRfd-~~i~lP~~e~R 313 (438)
+ ||. ..+.+|...+|
T Consensus 167 ~--Rl~~~~i~lp~L~~R 182 (265)
T 2bjv_A 167 D--ALAFDVVQLPPLRER 182 (265)
T ss_dssp H--HHCSEEEECCCGGGC
T ss_pred H--hhcCcEEeCCChhhh
Confidence 8 886 45667776554
No 70
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.31 E-value=9.3e-11 Score=116.98 Aligned_cols=159 Identities=13% Similarity=0.081 Sum_probs=103.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 236 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~ 236 (438)
..+..++|+||||||||++++++|+.++.++...++..+.. ...+..++.. ...++|+||||++.+.+
T Consensus 49 ~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~------~~~l~~~~~~------~~~~~v~~iDE~~~l~~ 116 (334)
T 1in4_A 49 EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILTS------LERGDVLFIDEIHRLNK 116 (334)
T ss_dssp CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS------HHHHHHHHHH------CCTTCEEEEETGGGCCH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC------HHHHHHHHHH------ccCCCEEEEcchhhcCH
Confidence 34577999999999999999999999999887777654431 2333333321 34578999999998753
Q ss_pred CCCCCccccchhHHHHHHHHHhhcCCC-cccc-CCc---cccCCCCCceEEEecCCCCCCCccccCCCcceEEEe--cCC
Q 013704 237 RMGGTTQYTVNNQMVNATLMNIADNPT-NVQL-PGM---YNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 309 (438)
Q Consensus 237 ~r~~~~~~~~~~~~v~~~Ll~Lld~~~-~v~l-dg~---~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~ 309 (438)
. +...|+..+.+.. .+.+ .+. ........+.+|++||++..|++++++ ||...+. .|+
T Consensus 117 ~-------------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~ 181 (334)
T 1in4_A 117 A-------------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYT 181 (334)
T ss_dssp H-------------HHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCC
T ss_pred H-------------HHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCC
Confidence 1 1122333222110 0000 000 000112457788899999999999999 9976665 589
Q ss_pred HHHHHHHHHhhhCC--CCCCHHHHHHHHccCCcch
Q 013704 310 REDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQS 342 (438)
Q Consensus 310 ~e~R~~Il~~~l~~--~~v~~~~la~l~~~~sgad 342 (438)
.+++.+|++..... ..++.+.+..+++...|..
T Consensus 182 ~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~ 216 (334)
T 1in4_A 182 VKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTP 216 (334)
T ss_dssp HHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCH
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCCh
Confidence 99999999876543 3456677777777766644
No 71
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.30 E-value=2.9e-11 Score=120.62 Aligned_cols=150 Identities=11% Similarity=0.088 Sum_probs=100.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------eEEEeccccccCCCCChHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 212 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~------------------------~i~vs~~~l~s~~~Ge~~~~ir~~f~ 212 (438)
+.|..+||+||||+|||++|+++|+.+... ++.+.+.+- +. .-....+|.+.+
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~~--~~~i~~ir~l~~ 98 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-KN--TLGVDAVREVTE 98 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-CS--SBCHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-CC--CCCHHHHHHHHH
Confidence 567889999999999999999999997542 233332100 00 112345677666
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCC
Q 013704 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (438)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld 292 (438)
.+..........|+||||+|.+... ..+.|+..++ +...++.+|++||.++.+.
T Consensus 99 ~~~~~~~~~~~kvviIdead~l~~~-------------a~naLLk~lE-------------ep~~~~~~Il~t~~~~~l~ 152 (334)
T 1a5t_A 99 KLNEHARLGGAKVVWVTDAALLTDA-------------AANALLKTLE-------------EPPAETWFFLATREPERLL 152 (334)
T ss_dssp HTTSCCTTSSCEEEEESCGGGBCHH-------------HHHHHHHHHT-------------SCCTTEEEEEEESCGGGSC
T ss_pred HHhhccccCCcEEEEECchhhcCHH-------------HHHHHHHHhc-------------CCCCCeEEEEEeCChHhCc
Confidence 5431101345789999999988421 2245666555 4556788999999999999
Q ss_pred ccccCCCcceEEEe-cCCHHHHHHHHHhhhCCCCCCHHHHHHHHccCCc
Q 013704 293 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPG 340 (438)
Q Consensus 293 ~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~~~v~~~~la~l~~~~sg 340 (438)
+++++ |+..+.. .|+.++..++++... .++.+.+..++....|
T Consensus 153 ~ti~S--Rc~~~~~~~~~~~~~~~~L~~~~---~~~~~~~~~l~~~s~G 196 (334)
T 1a5t_A 153 ATLRS--RCRLHYLAPPPEQYAVTWLSREV---TMSQDALLAALRLSAG 196 (334)
T ss_dssp HHHHT--TSEEEECCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHTTT
T ss_pred HHHhh--cceeeeCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHcCC
Confidence 99999 8754333 489999999888765 5566655555444333
No 72
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.30 E-value=1.9e-11 Score=119.14 Aligned_cols=148 Identities=14% Similarity=0.191 Sum_probs=98.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh-----CCceEEEeccccccCCCCChHHHHHHHHHHHHHHHH---hCCceeEEec
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK---KGKMCCLFIN 229 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l-----g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~---~~~p~ILfID 229 (438)
.|. +|||||||+|||++|+++++.+ +.+++.+++++.. ....++..++....... ...+.|||||
T Consensus 42 ~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viiiD 114 (323)
T 1sxj_B 42 MPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVILD 114 (323)
T ss_dssp CCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEEE
T ss_pred CCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEEE
Confidence 344 9999999999999999999996 3457777765422 13445555543320000 2348899999
Q ss_pred cccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe-cC
Q 013704 230 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-AP 308 (438)
Q Consensus 230 EiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~-lP 308 (438)
|+|.+... ....|+.+++ ....++.+|++||.+..+++++++ |+..+.. .|
T Consensus 115 e~~~l~~~-------------~~~~L~~~le-------------~~~~~~~~il~~~~~~~l~~~l~s--r~~~i~~~~~ 166 (323)
T 1sxj_B 115 EADSMTAG-------------AQQALRRTME-------------LYSNSTRFAFACNQSNKIIEPLQS--QCAILRYSKL 166 (323)
T ss_dssp SGGGSCHH-------------HHHTTHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHT--TSEEEECCCC
T ss_pred CcccCCHH-------------HHHHHHHHHh-------------ccCCCceEEEEeCChhhchhHHHh--hceEEeecCC
Confidence 99987432 1233455444 334667899999999999999999 7763322 48
Q ss_pred CHHHHHHHHHhhhCCC--CCCHHHHHHHHccCCc
Q 013704 309 TREDRIGVCSGIFRTD--NVPKEDIVKLVDTFPG 340 (438)
Q Consensus 309 ~~e~R~~Il~~~l~~~--~v~~~~la~l~~~~sg 340 (438)
+.++..++++..+... .++.+.+..++....|
T Consensus 167 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G 200 (323)
T 1sxj_B 167 SDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG 200 (323)
T ss_dssp CHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9999999998776543 4556555555554433
No 73
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.29 E-value=2.6e-11 Score=121.23 Aligned_cols=152 Identities=11% Similarity=0.095 Sum_probs=97.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh----CCceEEEeccccccC----------------CCCChHHHHHHHHHHHHHHHH
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELESG----------------NAGEPAKLIRQRYREAADIIK 219 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~l----g~~~i~vs~~~l~s~----------------~~Ge~~~~ir~~f~~A~~~~~ 219 (438)
..++|+||||||||++++++++.+ +..++.+++....+. ..+..... +++.....+.
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---~~~~l~~~l~ 121 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDE---FLALLVEHLR 121 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHH---HHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHH---HHHHHHHHHh
Confidence 389999999999999999999998 677888887543310 01211122 2222222222
Q ss_pred -hCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCC---CCCCccc
Q 013704 220 -KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF---STLYAPL 295 (438)
Q Consensus 220 -~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~---~~Ld~aL 295 (438)
...|.||||||+|.+. ......|+.++++ +. .....++.+|++||.+ +.+++.+
T Consensus 122 ~~~~~~vlilDE~~~l~-------------~~~~~~L~~~~~~-----~~----~~~~~~~~iI~~~~~~~~~~~l~~~~ 179 (389)
T 1fnn_A 122 ERDLYMFLVLDDAFNLA-------------PDILSTFIRLGQE-----AD----KLGAFRIALVIVGHNDAVLNNLDPST 179 (389)
T ss_dssp HTTCCEEEEEETGGGSC-------------HHHHHHHHHHTTC-----HH----HHSSCCEEEEEEESSTHHHHTSCHHH
T ss_pred hcCCeEEEEEECccccc-------------hHHHHHHHHHHHh-----CC----CCCcCCEEEEEEECCchHHHHhCHHh
Confidence 4568999999999881 1234455554431 00 0011578999999988 6788888
Q ss_pred cCCCcceE-EEec--CCHHHHHHHHHhhhCC----CCCCHHHHHHHHccC
Q 013704 296 IRDGRMEK-FYWA--PTREDRIGVCSGIFRT----DNVPKEDIVKLVDTF 338 (438)
Q Consensus 296 lR~GRfd~-~i~l--P~~e~R~~Il~~~l~~----~~v~~~~la~l~~~~ 338 (438)
.+ ||.. .+.+ ++.++..++++..+.. ..++.+.+..+....
T Consensus 180 ~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 227 (389)
T 1fnn_A 180 RG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADIT 227 (389)
T ss_dssp HH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHH
T ss_pred hh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 88 7764 4554 6888899998866542 456666655555444
No 74
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.27 E-value=1e-10 Score=116.62 Aligned_cols=149 Identities=14% Similarity=0.157 Sum_probs=98.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCc------------------------eEEEeccccccCCCCChHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 212 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~------------------------~i~vs~~~l~s~~~Ge~~~~ir~~f~ 212 (438)
+.|..+||+||||||||++|+++++.++.. ++.++... . .....++.+++
T Consensus 36 ~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~l~~ 109 (373)
T 1jr3_A 36 RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS----R--TKVEDTRDLLD 109 (373)
T ss_dssp CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTC----S--CCSSCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccc----c--CCHHHHHHHHH
Confidence 446789999999999999999999997642 23333221 0 11123455555
Q ss_pred HHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCC
Q 013704 213 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 292 (438)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld 292 (438)
.+........+.||||||+|.+.. .....|+.+++ ....++.+|++||.+..++
T Consensus 110 ~~~~~~~~~~~~vliiDe~~~l~~-------------~~~~~Ll~~le-------------~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 110 NVQYAPARGRFKVYLIDEVHMLSR-------------HSFNALLKTLE-------------EPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp HTTSCCSSSSSEEEEEECGGGSCH-------------HHHHHHHHHHH-------------SCCSSEEEEEEESCGGGSC
T ss_pred HHhhccccCCeEEEEEECcchhcH-------------HHHHHHHHHHh-------------cCCCceEEEEEeCChHhCc
Confidence 432000134578999999998732 12244555554 3456788999999999999
Q ss_pred ccccCCCcceEEEe--cCCHHHHHHHHHhhhCCC--CCCHHHHHHHHccCCc
Q 013704 293 APLIRDGRMEKFYW--APTREDRIGVCSGIFRTD--NVPKEDIVKLVDTFPG 340 (438)
Q Consensus 293 ~aLlR~GRfd~~i~--lP~~e~R~~Il~~~l~~~--~v~~~~la~l~~~~sg 340 (438)
+++++ |+. .+. .|+.++..++++.++... .++.+.+..++....|
T Consensus 164 ~~l~s--r~~-~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G 212 (373)
T 1jr3_A 164 VTILS--RCL-QFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 212 (373)
T ss_dssp HHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS
T ss_pred HHHHh--hee-EeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC
Confidence 99998 773 344 489999999998877644 3455556656655544
No 75
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.26 E-value=9e-12 Score=109.42 Aligned_cols=90 Identities=10% Similarity=0.097 Sum_probs=65.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccc
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 235 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~ 235 (438)
+..+||+||||||||++|++|++.. +.+|+ ++++.+... ......|..+ .+++|||||+|.+.
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a-------~~g~l~ldei~~l~ 89 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALA-------QGGTLVLSHPEHLT 89 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHH-------TTSCEEEECGGGSC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHc-------CCcEEEEcChHHCC
Confidence 4569999999999999999999986 77899 998877644 2233455544 46899999999884
Q ss_pred cCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCC
Q 013704 236 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 288 (438)
Q Consensus 236 ~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~ 288 (438)
.. +...|++++. ....++.+|+|||.+
T Consensus 90 ~~-------------~q~~Ll~~l~-------------~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 90 RE-------------QQYHLVQLQS-------------QEHRPFRLIGIGDTS 116 (145)
T ss_dssp HH-------------HHHHHHHHHH-------------SSSCSSCEEEEESSC
T ss_pred HH-------------HHHHHHHHHh-------------hcCCCEEEEEECCcC
Confidence 32 2244555443 334667899999974
No 76
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.26 E-value=7.4e-11 Score=117.23 Aligned_cols=148 Identities=16% Similarity=0.325 Sum_probs=90.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC-----------------------------ceEEEeccccccCCCCChHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI-----------------------------NPIMMSAGELESGNAGEPAKLI 207 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~-----------------------------~~i~vs~~~l~s~~~Ge~~~~i 207 (438)
+.|. ++|+||||||||++++++++++.. .++.+..... .......+
T Consensus 35 ~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 109 (354)
T 1sxj_E 35 DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDM----GNNDRIVI 109 (354)
T ss_dssp CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC--------CCHHHH
T ss_pred CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhc----CCcchHHH
Confidence 3455 999999999999999999997421 1122222111 01111134
Q ss_pred HHHHHHHHHHHH----------hCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCC
Q 013704 208 RQRYREAADIIK----------KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP 277 (438)
Q Consensus 208 r~~f~~A~~~~~----------~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~ 277 (438)
++.++.+..... ...|.||||||++.+.. .....|+++++ +...
T Consensus 110 ~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~-------------~~~~~L~~~le-------------~~~~ 163 (354)
T 1sxj_E 110 QELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK-------------DAQAALRRTME-------------KYSK 163 (354)
T ss_dssp HHHHHHHTTTTC------------CCEEEEEECTTSSCH-------------HHHHHHHHHHH-------------HSTT
T ss_pred HHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH-------------HHHHHHHHHHH-------------hhcC
Confidence 444443321000 23678999999998521 12234555444 2235
Q ss_pred CceEEEecCCCCCCCccccCCCcceEEEe--cCCHHHHHHHHHhhhCCCC--CC-HHHHHHHHccC
Q 013704 278 RVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTDN--VP-KEDIVKLVDTF 338 (438)
Q Consensus 278 ~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~--lP~~e~R~~Il~~~l~~~~--v~-~~~la~l~~~~ 338 (438)
++.+|++||+++.+.+++++ |+ ..+. .|+.+++.++++.++...+ ++ .+.+..++...
T Consensus 164 ~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~ 226 (354)
T 1sxj_E 164 NIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQAS 226 (354)
T ss_dssp TEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHc
Confidence 67899999999999999999 88 4444 4899999999988776544 34 44455554443
No 77
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.24 E-value=4e-11 Score=118.39 Aligned_cols=158 Identities=16% Similarity=0.195 Sum_probs=95.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccC-----CCC--------ChHHHHHHHHHHHHHHHHhC
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAG--------EPAKLIRQRYREAADIIKKG 221 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~-----~~G--------e~~~~ir~~f~~A~~~~~~~ 221 (438)
.+..+||+||||||||++|++|++.. +.+|+.++++.+... +.| ... .....|..|
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~-~~~g~~~~a------- 95 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADK-RREGRFVEA------- 95 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---C-CCCCHHHHH-------
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhh-hhcCHHHhc-------
Confidence 45679999999999999999999975 578999998765421 111 100 011233333
Q ss_pred CceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCC-------CCCCcc
Q 013704 222 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-------STLYAP 294 (438)
Q Consensus 222 ~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~-------~~Ld~a 294 (438)
.+++|||||+|.+... +...|+.++++.....+++. .....++.||+|||.. ..+++.
T Consensus 96 ~~g~L~LDEi~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~--~~~~~~~riI~atn~~l~~~v~~g~fr~~ 160 (304)
T 1ojl_A 96 DGGTLFLDEIGDISPL-------------MQVRLLRAIQEREVQRVGSN--QTISVDVRLIAATHRDLAEEVSAGRFRQD 160 (304)
T ss_dssp TTSEEEEESCTTCCHH-------------HHHHHHHHHHSSBCCBTTBC--CCCBCCCEEEEEESSCHHHHHHHTSSCHH
T ss_pred CCCEEEEeccccCCHH-------------HHHHHHHHHhcCEeeecCCc--ccccCCeEEEEecCccHHHHHHhCCcHHH
Confidence 3689999999988432 23456666663222222221 1223578899999986 235566
Q ss_pred ccCCCcceE-EEecCCHHHH----HHHHHhhhC---------CCCCCHHHHHHHHcc-CCc
Q 013704 295 LIRDGRMEK-FYWAPTREDR----IGVCSGIFR---------TDNVPKEDIVKLVDT-FPG 340 (438)
Q Consensus 295 LlR~GRfd~-~i~lP~~e~R----~~Il~~~l~---------~~~v~~~~la~l~~~-~sg 340 (438)
|.. ||.. .+.+|...+| ..+++.++. ...++.+.+..+... |+|
T Consensus 161 L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpG 219 (304)
T 1ojl_A 161 LYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPG 219 (304)
T ss_dssp HHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSS
T ss_pred HHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCC
Confidence 666 6643 3557876555 334544332 134666667766654 354
No 78
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.23 E-value=1e-11 Score=151.37 Aligned_cols=171 Identities=13% Similarity=0.160 Sum_probs=106.4
Q ss_pred CcEEEEEcCCCCcHHHHHHH-HHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHH-----------hCCceeE
Q 013704 159 PLILGIWGGKGQGKSFQCEL-VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-----------KGKMCCL 226 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~a-IA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~-----------~~~p~IL 226 (438)
.+++||+||||||||++|+. +++..+..++.++.+...+ ...+...++...+..+ ..+++||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 46899999999999999954 5444567777777664432 3344444443210000 2345799
Q ss_pred EeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCC-----CCCceEEEecCCCC-----CCCcccc
Q 013704 227 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE-----NPRVPIIVTGNDFS-----TLYAPLI 296 (438)
Q Consensus 227 fIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~-----~~~v~VI~TTN~~~-----~Ld~aLl 296 (438)
||||++.....+.+ + |.+...|.++++ ..|+|.... ..++.+|+|||.+. .|+++|+
T Consensus 1341 FiDEinmp~~d~yg-~------q~~lelLRq~le------~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rll 1407 (2695)
T 4akg_A 1341 FCDEINLPKLDKYG-S------QNVVLFLRQLME------KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFT 1407 (2695)
T ss_dssp EEETTTCSCCCSSS-C------CHHHHHHHHHHH------TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHH
T ss_pred EecccccccccccC-c------hhHHHHHHHHHh------cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhh
Confidence 99999975444332 2 356667777665 344443221 14688999999994 8999999
Q ss_pred CCCcceEEEe--cCCHHHHHHHHHhhhCCCCCCHHHHHHHHccCCcchhHHHHHHHH
Q 013704 297 RDGRMEKFYW--APTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRA 351 (438)
Q Consensus 297 R~GRfd~~i~--lP~~e~R~~Il~~~l~~~~v~~~~la~l~~~~sgadi~~~~al~~ 351 (438)
| || ..++ .|+.+++..|+..++...--...++..+++....+.++++..++.
T Consensus 1408 R--rf-~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~ati~~y~~v~~ 1461 (2695)
T 4akg_A 1408 R--HA-AILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARASVHLYNECKA 1461 (2695)
T ss_dssp T--TE-EEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHHHHHHHHHHH
T ss_pred h--ee-eEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 99 4455 599999999998766421001122333344444455555544443
No 79
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.20 E-value=1.2e-11 Score=130.42 Aligned_cols=139 Identities=14% Similarity=0.123 Sum_probs=81.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC--ceEEEecc-----ccccCCCCChHHHHHHHHHHHHHHHHhC---CceeEEec
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAG-----ELESGNAGEPAKLIRQRYREAADIIKKG---KMCCLFIN 229 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~--~~i~vs~~-----~l~s~~~Ge~~~~ir~~f~~A~~~~~~~---~p~ILfID 229 (438)
..+||+||||||||++|+++|+.++. +|..+.+. ++.+.+.+..... ...|..+. .. .++|||||
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~-~g~~~~~~----~g~l~~~~IL~ID 116 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKD-EGRYERLT----SGYLPEAEIVFLD 116 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----------CBCC----TTSGGGCSEEEEE
T ss_pred CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhh-chhHHhhh----ccCCCcceeeeHH
Confidence 47999999999999999999998753 44444332 2222222211100 11122111 11 47799999
Q ss_pred cccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCC---CCccccCCCcceEEEe
Q 013704 230 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST---LYAPLIRDGRMEKFYW 306 (438)
Q Consensus 230 EiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~---Ld~aLlR~GRfd~~i~ 306 (438)
||+.+.+ .+...|++++++ ..+.++|.. ...+..++|+|||.+.. +.+++++ ||...++
T Consensus 117 EI~r~~~-------------~~q~~LL~~lee-~~v~i~G~~--~~~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~ 178 (500)
T 3nbx_X 117 EIWKAGP-------------AILNTLLTAINE-RQFRNGAHV--EKIPMRLLVAASNELPEADSSLEALYD--RMLIRLW 178 (500)
T ss_dssp SGGGCCH-------------HHHHHHHHHHHS-SEEECSSSE--EECCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEE
T ss_pred hHhhhcH-------------HHHHHHHHHHHH-HhccCCCCc--CCcchhhhhhccccCCCccccHHHHHH--HHHHHHH
Confidence 9976532 344667776662 334445441 11223346888886332 3358999 9988888
Q ss_pred c--CCH-HHHHHHHHhhh
Q 013704 307 A--PTR-EDRIGVCSGIF 321 (438)
Q Consensus 307 l--P~~-e~R~~Il~~~l 321 (438)
+ |+. +++..|++...
T Consensus 179 v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 179 LDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp CCSCCCHHHHHHHHTCCC
T ss_pred HHHhhhhhhHHHHHhccc
Confidence 4 654 77889998654
No 80
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.19 E-value=1.4e-11 Score=132.50 Aligned_cols=138 Identities=16% Similarity=0.191 Sum_probs=87.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEE----eccccccCCCCChHH----HHHHHHHHHHHHHHhCCceeEEecccc
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMM----SAGELESGNAGEPAK----LIRQRYREAADIIKKGKMCCLFINDLD 232 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~v----s~~~l~s~~~Ge~~~----~ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (438)
++||+||||||||++|+++|+.++..++.. ++..+.......... .-...+. ....+||||||+|
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~-------~A~~gil~IDEid 401 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALV-------LADGGIAVIDEID 401 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHH-------HHSSSEECCTTTT
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeE-------ecCCCcEEeehhh
Confidence 799999999999999999999987654432 222222111110000 0001122 2246899999999
Q ss_pred ccccCCCCCccccchhHHHHHHHHHhhcCCCccccC--CccccCCCCCceEEEecCCCC-------------CCCccccC
Q 013704 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP--GMYNQEENPRVPIIVTGNDFS-------------TLYAPLIR 297 (438)
Q Consensus 233 ~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ld--g~~~~~~~~~v~VI~TTN~~~-------------~Ld~aLlR 297 (438)
++... +...|++++++- .+.+. |. ......++.||+|||... .|+++|++
T Consensus 402 ~l~~~-------------~q~~Ll~~le~~-~i~i~~~g~-~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~ 466 (595)
T 3f9v_A 402 KMRDE-------------DRVAIHEAMEQQ-TVSIAKAGI-VAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS 466 (595)
T ss_dssp CCCSH-------------HHHHHHHHHHSS-SEEEESSSS-EEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG
T ss_pred hCCHh-------------HhhhhHHHHhCC-EEEEecCCc-EEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh
Confidence 87432 335566766632 22211 22 112346788999999987 89999999
Q ss_pred CCcceEEEe---cCCHHHHHHHHHhhhCC
Q 013704 298 DGRMEKFYW---APTREDRIGVCSGIFRT 323 (438)
Q Consensus 298 ~GRfd~~i~---lP~~e~R~~Il~~~l~~ 323 (438)
|||..+. .|+.+ ...|.+.++..
T Consensus 467 --RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 467 --RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp --GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred --hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 9986555 47777 88888777654
No 81
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.18 E-value=4.3e-12 Score=111.35 Aligned_cols=90 Identities=11% Similarity=0.026 Sum_probs=65.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCC
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 238 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r 238 (438)
+..+||+||||||||++|+++++..+ +++.++++.+...+ .+..|.. ..+++|||||+|.+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~~-------a~~~~l~lDei~~l~~~- 90 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQK-------AEGGVLYVGDIAQYSRN- 90 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHHH-------TTTSEEEEEECTTCCHH-
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHHh-------CCCCeEEEeChHHCCHH-
Confidence 45699999999999999999999988 89999988765322 3445553 34789999999988432
Q ss_pred CCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCC
Q 013704 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 288 (438)
Q Consensus 239 ~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~ 288 (438)
....|++++++ ....++.+|+|||..
T Consensus 91 ------------~q~~Ll~~l~~------------~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 91 ------------IQTGITFIIGK------------AERCRVRVIASCSYA 116 (143)
T ss_dssp ------------HHHHHHHHHHH------------HTTTTCEEEEEEEEC
T ss_pred ------------HHHHHHHHHHh------------CCCCCEEEEEecCCC
Confidence 22345554441 124568899999865
No 82
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.17 E-value=3e-10 Score=113.11 Aligned_cols=143 Identities=14% Similarity=0.210 Sum_probs=91.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCC-----ceEEEeccccccCCCCChHHHHHHHHHHHHHHHH--hCCceeEEecc
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGI-----NPIMMSAGELESGNAGEPAKLIRQRYREAADIIK--KGKMCCLFIND 230 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~-----~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~--~~~p~ILfIDE 230 (438)
.|. +|||||||||||++++++|+.+.. .++.+++++.. | ...+++......+... ...+.|++|||
T Consensus 46 ~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~----~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe 118 (340)
T 1sxj_C 46 LPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR----G--IDVVRNQIKDFASTRQIFSKGFKLIILDE 118 (340)
T ss_dssp CCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC----S--HHHHHTHHHHHHHBCCSSSCSCEEEEETT
T ss_pred Cce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccc----c--HHHHHHHHHHHHhhcccCCCCceEEEEeC
Confidence 344 999999999999999999999632 35566655321 1 2344444433220000 12478999999
Q ss_pred ccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEe-cCC
Q 013704 231 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APT 309 (438)
Q Consensus 231 iD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~-lP~ 309 (438)
+|.+... ....|+.+++ .....+.+|++||.+..+.+++++ |+..+.. -++
T Consensus 119 ~~~l~~~-------------~~~~L~~~le-------------~~~~~~~~il~~n~~~~i~~~i~s--R~~~~~~~~l~ 170 (340)
T 1sxj_C 119 ADAMTNA-------------AQNALRRVIE-------------RYTKNTRFCVLANYAHKLTPALLS--QCTRFRFQPLP 170 (340)
T ss_dssp GGGSCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHT--TSEEEECCCCC
T ss_pred CCCCCHH-------------HHHHHHHHHh-------------cCCCCeEEEEEecCccccchhHHh--hceeEeccCCC
Confidence 9987421 1234555444 334567788999999999999999 8864433 367
Q ss_pred HHHHHHHHHhhhCCC--CCCHHHHHHHH
Q 013704 310 REDRIGVCSGIFRTD--NVPKEDIVKLV 335 (438)
Q Consensus 310 ~e~R~~Il~~~l~~~--~v~~~~la~l~ 335 (438)
.++..+++...+... .++.+.+..++
T Consensus 171 ~~~~~~~l~~~~~~~~~~i~~~~~~~i~ 198 (340)
T 1sxj_C 171 QEAIERRIANVLVHEKLKLSPNAEKALI 198 (340)
T ss_dssp HHHHHHHHHHHHHTTTCCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 888888888777544 34444433333
No 83
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.16 E-value=2e-10 Score=113.70 Aligned_cols=129 Identities=7% Similarity=-0.062 Sum_probs=90.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh------CCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM------GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l------g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (438)
+..+|||||||+|||++|+++|+.+ ...++.++++. . ..+...+|++.+.+...--.....|+||||+|
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~--~~~id~ir~li~~~~~~p~~~~~kvviIdead 92 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---E--NIGIDDIRTIKDFLNYSPELYTRKYVIVHDCE 92 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---S--CBCHHHHHHHHHHHTSCCSSSSSEEEEETTGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---C--CCCHHHHHHHHHHHhhccccCCceEEEeccHH
Confidence 5689999999999999999999974 34566666542 0 12244577777766300002335799999999
Q ss_pred ccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEecCCHHH
Q 013704 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED 312 (438)
Q Consensus 233 ~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~lP~~e~ 312 (438)
.+... ..+.|+..++ +..+++.+|++||.++.|.+++++ | -..+..|+.++
T Consensus 93 ~lt~~-------------a~naLLk~LE-------------ep~~~t~fIl~t~~~~kl~~tI~S--R-~~~f~~l~~~~ 143 (305)
T 2gno_A 93 RMTQQ-------------AANAFLKALE-------------EPPEYAVIVLNTRRWHYLLPTIKS--R-VFRVVVNVPKE 143 (305)
T ss_dssp GBCHH-------------HHHHTHHHHH-------------SCCTTEEEEEEESCGGGSCHHHHT--T-SEEEECCCCHH
T ss_pred HhCHH-------------HHHHHHHHHh-------------CCCCCeEEEEEECChHhChHHHHc--e-eEeCCCCCHHH
Confidence 88421 2345666555 556778888889999999999999 7 33333578888
Q ss_pred HHHHHHhhh
Q 013704 313 RIGVCSGIF 321 (438)
Q Consensus 313 R~~Il~~~l 321 (438)
..+.++..+
T Consensus 144 i~~~L~~~~ 152 (305)
T 2gno_A 144 FRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888887666
No 84
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.13 E-value=3.5e-10 Score=102.08 Aligned_cols=101 Identities=16% Similarity=0.138 Sum_probs=64.3
Q ss_pred hccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh----CCceEEEeccccc
Q 013704 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELE 196 (438)
Q Consensus 121 r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~l----g~~~i~vs~~~l~ 196 (438)
+.++|++.... .+ ..+.+...++.+........+.+++|+||||||||+++++++..+ |..++.++..++.
T Consensus 5 ~~~~f~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~ 79 (180)
T 3ec2_A 5 WNANLDTYHPK---NV--SQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLI 79 (180)
T ss_dssp TTCCSSSCCCC---SH--HHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHH
T ss_pred hhCccccccCC---CH--HHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 44566665442 11 223455666777766666667899999999999999999999986 6677777766554
Q ss_pred cCCCCChHHHHHHHHHHH---HHHHHhCCceeEEecccccc
Q 013704 197 SGNAGEPAKLIRQRYREA---ADIIKKGKMCCLFINDLDAG 234 (438)
Q Consensus 197 s~~~Ge~~~~ir~~f~~A---~~~~~~~~p~ILfIDEiD~l 234 (438)
.. +...+... ..+.....|.+|+|||++..
T Consensus 80 ~~--------~~~~~~~~~~~~~~~~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 80 FR--------LKHLMDEGKDTKFLKTVLNSPVLVLDDLGSE 112 (180)
T ss_dssp HH--------HHHHHHHTCCSHHHHHHHTCSEEEEETCSSS
T ss_pred HH--------HHHHhcCchHHHHHHHhcCCCEEEEeCCCCC
Confidence 21 11222110 00111346899999999854
No 85
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.04 E-value=1.5e-09 Score=99.43 Aligned_cols=107 Identities=16% Similarity=0.166 Sum_probs=59.8
Q ss_pred hhhhccccccccCCCCCChhhHHHHHHHHHHhhhcCC-CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEecc
Q 013704 118 QGLRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLP-NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 193 (438)
Q Consensus 118 ~~~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~-~~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~ 193 (438)
..++.++|+++... .+. . +.....++.++... ....|.+++|+||||||||++|+++++++ +.+++.++++
T Consensus 17 ~~~~~~~f~~~~~~---~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 17 REILRASLSDVDLN---DDG-R-IKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp GGGGCCCTTSSCCS---SHH-H-HHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred HHHHcCCHhhccCC---Chh-H-HHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 34455566765543 111 1 22223334444322 22235899999999999999999999987 6778888876
Q ss_pred ccccCCCCCh-HHHHHHHHHHHHHHHHhCCceeEEeccccccc
Q 013704 194 ELESGNAGEP-AKLIRQRYREAADIIKKGKMCCLFINDLDAGA 235 (438)
Q Consensus 194 ~l~s~~~Ge~-~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~ 235 (438)
++...+.... ...+...+... ..+.+|||||++...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~lilDei~~~~ 128 (202)
T 2w58_A 92 ELFRELKHSLQDQTMNEKLDYI------KKVPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHHHHC---CCCHHHHHHH------HHSSEEEEEEECCC-
T ss_pred HHHHHHHHHhccchHHHHHHHh------cCCCEEEEcCCCCCc
Confidence 5542110000 00011112211 135699999997654
No 86
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.98 E-value=3.9e-10 Score=132.65 Aligned_cols=113 Identities=15% Similarity=0.158 Sum_probs=82.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccc------------cCCCCC----hHHHHHHHHHHHHHHHHh
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE------------SGNAGE----PAKLIRQRYREAADIIKK 220 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~------------s~~~Ge----~~~~ir~~f~~A~~~~~~ 220 (438)
+.+|||||||||||++|++++.+. |-+.++++..++. ++|+++ +++.++.+|..|+ .
T Consensus 1083 ~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar----~ 1158 (1706)
T 3cmw_A 1083 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR----S 1158 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH----H
T ss_pred CEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHH----h
Confidence 449999999999999999999985 5567777776644 677787 8999999998887 8
Q ss_pred CCceeEEeccccccccCCC---CCc--cccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC
Q 013704 221 GKMCCLFINDLDAGAGRMG---GTT--QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS 289 (438)
Q Consensus 221 ~~p~ILfIDEiD~l~~~r~---~~~--~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~ 289 (438)
..||+||+|++|+++++++ ... +.....|.+++.|.++. +. ....+|.|| +||+..
T Consensus 1159 ~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~---------~~---~~~~~v~v~-~~n~~~ 1219 (1706)
T 3cmw_A 1159 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA---------GN---LKQSNTLLI-FINQIR 1219 (1706)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHH---------HH---HHHTTCEEE-EEECEE
T ss_pred cCCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHHH---------hh---hccCCeEEE-Eecccc
Confidence 9999999999999999832 111 11333445666665532 32 334677666 777653
No 87
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.93 E-value=6.7e-10 Score=109.95 Aligned_cols=105 Identities=11% Similarity=0.127 Sum_probs=58.9
Q ss_pred hhccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC----CceEEEecccc
Q 013704 120 LRQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGEL 195 (438)
Q Consensus 120 ~r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg----~~~i~vs~~~l 195 (438)
++..+|+++..... ....+...++.++.......+.+++||||||||||+||.++|+++. .++++++++++
T Consensus 118 ~~~~tfd~f~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l 192 (308)
T 2qgz_A 118 YRHIHLSDIDVNNA-----SRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSF 192 (308)
T ss_dssp GGSCCGGGSCCCSH-----HHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHH
T ss_pred HHhCCHhhCcCCCh-----HHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHH
Confidence 34456666554311 1122333455555432222368999999999999999999998754 78888887765
Q ss_pred ccCCCCCh-HHHHHHHHHHHHHHHHhCCceeEEeccccccc
Q 013704 196 ESGNAGEP-AKLIRQRYREAADIIKKGKMCCLFINDLDAGA 235 (438)
Q Consensus 196 ~s~~~Ge~-~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~ 235 (438)
...+.... ...+...+.. -..+.+|||||++...
T Consensus 193 ~~~l~~~~~~~~~~~~~~~------~~~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 193 AIDVKNAISNGSVKEEIDA------VKNVPVLILDDIGAEQ 227 (308)
T ss_dssp HHHHHCCCC----CCTTHH------HHTSSEEEEETCCC--
T ss_pred HHHHHHHhccchHHHHHHH------hcCCCEEEEcCCCCCC
Confidence 43221100 0001111111 1245799999997653
No 88
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.91 E-value=1.2e-09 Score=109.04 Aligned_cols=122 Identities=16% Similarity=0.132 Sum_probs=70.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEec--cccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA--GELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~--~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (438)
+..+...++|+||||||||+||..+|.+.|.++++++. .+..+.+..+.+..++.+++... ... +||||+++
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~----~~~--LLVIDsI~ 192 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAML----QHR--VIVIDSLK 192 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHH----HCS--EEEEECCT
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHh----hCC--EEEEeccc
Confidence 44445678999999999999999999886655444444 44444444455555544444332 443 99999999
Q ss_pred ccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccc
Q 013704 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPL 295 (438)
Q Consensus 233 ~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aL 295 (438)
.+.....+.+......+.+.+.|.+|.. . ....++.+|+++| +...++++
T Consensus 193 aL~~~~~~~s~~G~v~~~lrqlL~~L~~---------~---~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 193 NVIGAAGGNTTSGGISRGAFDLLSDIGA---------M---AASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp TTC-----------CCHHHHHHHHHHHH---------H---HHHHTCEEEEECC-CSSCSSSH
T ss_pred ccccccccccccchHHHHHHHHHHHHHH---------H---HhhCCCEEEEEeC-CcccchhH
Confidence 9965433211111122334444444332 0 1134677888888 55666664
No 89
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.90 E-value=5.7e-09 Score=105.14 Aligned_cols=160 Identities=9% Similarity=0.115 Sum_probs=92.0
Q ss_pred CCcEEEE--EcCCCCcHHHHHHHHHHHh---------CCceEEEeccccccC----------------CCCChHHHHHHH
Q 013704 158 VPLILGI--WGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG----------------NAGEPAKLIRQR 210 (438)
Q Consensus 158 ~p~glLL--~GPPGtGKT~lA~aIA~~l---------g~~~i~vs~~~l~s~----------------~~Ge~~~~ir~~ 210 (438)
.+..++| +||||+|||++++.+++.+ +..++++++....+. ..+.+.. .+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---~~ 125 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPAL---DI 125 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHH---HH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHH---HH
Confidence 4678999 9999999999999999886 556777776422110 0111111 12
Q ss_pred HHHHHHHHH-hCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCC--CCceEEEecCC
Q 013704 211 YREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN--PRVPIIVTGND 287 (438)
Q Consensus 211 f~~A~~~~~-~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~--~~v~VI~TTN~ 287 (438)
++.....+. ...|.||+|||++.+...... .+.+...|+.++. .+. ... .++.+|+|||.
T Consensus 126 ~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~-------~~~~l~~l~~~~~-----~~~-----~~~~~~~v~lI~~~~~ 188 (412)
T 1w5s_A 126 LKALVDNLYVENHYLLVILDEFQSMLSSPRI-------AAEDLYTLLRVHE-----EIP-----SRDGVNRIGFLLVASD 188 (412)
T ss_dssp HHHHHHHHHHHTCEEEEEEESTHHHHSCTTS-------CHHHHHHHHTHHH-----HSC-----CTTSCCBEEEEEEEEE
T ss_pred HHHHHHHHHhcCCeEEEEEeCHHHHhhccCc-------chHHHHHHHHHHH-----hcc-----cCCCCceEEEEEEecc
Confidence 222211222 467999999999998643110 1123333333333 000 112 67889999987
Q ss_pred CC---CCC---ccccCCCcceEEEec--CCHHHHHHHHHhhhC----CCCCCHHHHHHHHccCC
Q 013704 288 FS---TLY---APLIRDGRMEKFYWA--PTREDRIGVCSGIFR----TDNVPKEDIVKLVDTFP 339 (438)
Q Consensus 288 ~~---~Ld---~aLlR~GRfd~~i~l--P~~e~R~~Il~~~l~----~~~v~~~~la~l~~~~s 339 (438)
++ .++ +.+.+ ||...+.+ ++.++..++++..+. ...++.+.+..+.....
T Consensus 189 ~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~ 250 (412)
T 1w5s_A 189 VRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYG 250 (412)
T ss_dssp THHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHC
T ss_pred ccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence 65 233 55656 55444664 688889999875443 23455555444444333
No 90
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.81 E-value=4.5e-09 Score=93.10 Aligned_cols=59 Identities=20% Similarity=0.282 Sum_probs=47.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l 234 (438)
....++|+||+|+|||+|+++++..+ |...++++..++... +. ..+|.+|+|||++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~----~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DA----AFEAEYLAVDQVEKL 95 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GG----GGGCSEEEEESTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HH----HhCCCEEEEeCcccc
Confidence 45689999999999999999999987 777888888776533 11 235899999999875
Q ss_pred c
Q 013704 235 A 235 (438)
Q Consensus 235 ~ 235 (438)
.
T Consensus 96 ~ 96 (149)
T 2kjq_A 96 G 96 (149)
T ss_dssp C
T ss_pred C
Confidence 3
No 91
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.77 E-value=8.6e-09 Score=95.95 Aligned_cols=122 Identities=13% Similarity=0.121 Sum_probs=77.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH--------hC-CceEEEeccccccCCC----------CCh-----HHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK--------MG-INPIMMSAGELESGNA----------GEP-----AKLIRQRYREA 214 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~--------lg-~~~i~vs~~~l~s~~~----------Ge~-----~~~ir~~f~~A 214 (438)
+...|++|+||+|||++|.+.+.. .| .+++.....+|...+. ... ...+...+..+
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc
Confidence 567899999999999999886544 34 5666666665543221 111 11222221111
Q ss_pred HHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCcc
Q 013704 215 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 294 (438)
Q Consensus 215 ~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~a 294 (438)
...++||||||++.+.+.+....+ .. ..|.++.. ......-||++|+.++.|+.+
T Consensus 85 -----~~~~~vliIDEAq~l~~~~~~~~e---~~----rll~~l~~-------------~r~~~~~iil~tq~~~~l~~~ 139 (199)
T 2r2a_A 85 -----ENIGSIVIVDEAQDVWPARSAGSK---IP----ENVQWLNT-------------HRHQGIDIFVLTQGPKLLDQN 139 (199)
T ss_dssp -----GGTTCEEEETTGGGTSBCCCTTCC---CC----HHHHGGGG-------------TTTTTCEEEEEESCGGGBCHH
T ss_pred -----ccCceEEEEEChhhhccCccccch---hH----HHHHHHHh-------------cCcCCeEEEEECCCHHHHhHH
Confidence 456899999999999765421111 11 22333211 334566788899999999999
Q ss_pred ccCCCcceEEEec
Q 013704 295 LIRDGRMEKFYWA 307 (438)
Q Consensus 295 LlR~GRfd~~i~l 307 (438)
+++ |++..+++
T Consensus 140 lr~--ri~~~~~l 150 (199)
T 2r2a_A 140 LRT--LVRKHYHI 150 (199)
T ss_dssp HHT--TEEEEEEE
T ss_pred HHH--HhheEEEE
Confidence 988 99998885
No 92
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.76 E-value=1.1e-08 Score=95.74 Aligned_cols=125 Identities=16% Similarity=0.124 Sum_probs=67.7
Q ss_pred HHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeE
Q 013704 147 TKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL 226 (438)
Q Consensus 147 ~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL 226 (438)
.+.++. ++++..++|||||||||||++|.++|+.+.-.++....+. +.+ .+.. .....||
T Consensus 48 l~~~~~--~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~f----------~l~~------l~~~kIi 107 (212)
T 1tue_A 48 LKSFLK--GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SHF----------WLEP------LTDTKVA 107 (212)
T ss_dssp HHHHHH--TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SCG----------GGGG------GTTCSSE
T ss_pred HHHHHh--cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--chh----------hhcc------cCCCCEE
Confidence 344443 2333578999999999999999999999865433211110 000 0111 1224599
Q ss_pred EeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCcccc-CCCCCceEEEecCCC---CCCCccccCCCcce
Q 013704 227 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ-EENPRVPIIVTGNDF---STLYAPLIRDGRME 302 (438)
Q Consensus 227 fIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~-~~~~~v~VI~TTN~~---~~Ld~aLlR~GRfd 302 (438)
+|||+|.-+ .+.+...+.+++|- ..+.+|-.|.. ......|+|+|||.. +...+.|.+ |+.
T Consensus 108 iLDEad~~~------------~~~~d~~lrn~ldG-~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri~ 172 (212)
T 1tue_A 108 MLDDATTTC------------WTYFDTYMRNALDG-NPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RIT 172 (212)
T ss_dssp EEEEECHHH------------HHHHHHHCHHHHHT-CCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SCE
T ss_pred EEECCCchh------------HHHHHHHHHHHhCC-CcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hEE
Confidence 999998431 12233445555551 12233322221 112356999999974 333445666 775
Q ss_pred EEEe
Q 013704 303 KFYW 306 (438)
Q Consensus 303 ~~i~ 306 (438)
.+-+
T Consensus 173 ~f~F 176 (212)
T 1tue_A 173 VFEF 176 (212)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 4443
No 93
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.66 E-value=5.4e-08 Score=99.12 Aligned_cols=118 Identities=9% Similarity=0.081 Sum_probs=76.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccccc
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 234 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l 234 (438)
+++.+..++|+||||+|||+++++++...+..++.+..+. .. . .|... ...+.+++++||++.+
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~-------~~---~--~~~lg----~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL-------DR---L--NFELG----VAIDQFLVVFEDVKGT 228 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT-------TT---H--HHHHG----GGTTCSCEEETTCCCS
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc-------hh---H--HHHHH----HhcchhHHHHHHHHHH
Confidence 4566789999999999999999999999877655432221 10 0 11111 1345678899999998
Q ss_pred cc-CCCCCccccchhHHH-HHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceEEEecCC
Q 013704 235 AG-RMGGTTQYTVNNQMV-NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 309 (438)
Q Consensus 235 ~~-~r~~~~~~~~~~~~v-~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~~i~lP~ 309 (438)
.. .+.-... . .++ ...+.+.++ +.+.|+++||+++.+ ++++|+||++..++.+.
T Consensus 229 ~~~~r~l~~~-~---~~~~~~~l~~~ld----------------G~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 229 GGESRDLPSG-Q---GINNLDNLRDYLD----------------GSVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTTTTCCCC-S---HHHHHHTTHHHHH----------------CSSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHHHhhcccc-C---cchHHHHHHHHhc----------------CCCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 75 2211011 0 111 122223222 346789999999999 79999999999888654
No 94
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.63 E-value=1.2e-07 Score=101.95 Aligned_cols=103 Identities=15% Similarity=0.192 Sum_probs=59.8
Q ss_pred hCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCcc---------ccCCCCCceEEEecCCC--
Q 013704 220 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY---------NQEENPRVPIIVTGNDF-- 288 (438)
Q Consensus 220 ~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~---------~~~~~~~v~VI~TTN~~-- 288 (438)
...+.+|||||++.+.+ .+...|+.++++-. +...|.. ......++.||+|||+.
T Consensus 199 ~a~~gvL~LDEi~~l~~-------------~~q~~Ll~~Le~~~-~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~ 264 (604)
T 3k1j_A 199 RAHKGVLFIDEIATLSL-------------KMQQSLLTAMQEKK-FPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTV 264 (604)
T ss_dssp HTTTSEEEETTGGGSCH-------------HHHHHHHHHHHHSE-ECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHH
T ss_pred ecCCCEEEEechhhCCH-------------HHHHHHHHHHHcCc-EEecccccccccccCCCCccceeEEEEEecCHHHH
Confidence 34577999999998732 23345555555221 2221210 01112467799999987
Q ss_pred CCCCccccCCCcce---EEEecC-----CHHHHHHHHHhhhC-------CCCCCHHHHHHHHccC
Q 013704 289 STLYAPLIRDGRME---KFYWAP-----TREDRIGVCSGIFR-------TDNVPKEDIVKLVDTF 338 (438)
Q Consensus 289 ~~Ld~aLlR~GRfd---~~i~lP-----~~e~R~~Il~~~l~-------~~~v~~~~la~l~~~~ 338 (438)
..++++|++ ||. ..+.++ +.+....+++.+.. ...++.+.+..+...+
T Consensus 265 ~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~ 327 (604)
T 3k1j_A 265 DKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREA 327 (604)
T ss_dssp HHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHH
T ss_pred hhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHH
Confidence 679999999 886 445543 34555555543221 2356677776666544
No 95
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.58 E-value=6.8e-08 Score=119.03 Aligned_cols=141 Identities=13% Similarity=0.199 Sum_probs=92.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH-hCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHH------------hCCceeE
Q 013704 160 LILGIWGGKGQGKSFQCELVFAK-MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK------------KGKMCCL 226 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~-lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~------------~~~p~IL 226 (438)
+.+||+||||||||.++...... .+.+++.++.+.-. +...+...++...+... .++..|+
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~T------ta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSAT------TPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTC------CHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCC------CHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 45999999999999877654444 35566677766433 23445555542110000 1344799
Q ss_pred EeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccC-----CCCCceEEEecCCC-----CCCCcccc
Q 013704 227 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE-----ENPRVPIIVTGNDF-----STLYAPLI 296 (438)
Q Consensus 227 fIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~-----~~~~v~VI~TTN~~-----~~Ld~aLl 296 (438)
||||++.-.....| + |.+...|.+++| ..|+|... ...++.+|+|+|.+ ..|++.++
T Consensus 1379 FiDDiNmp~~D~yG-t------Q~~ielLrqlld------~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~ 1445 (3245)
T 3vkg_A 1379 FCDEINLPSTDKYG-T------QRVITFIRQMVE------KGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFL 1445 (3245)
T ss_dssp EETTTTCCCCCTTS-C------CHHHHHHHHHHH------HSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHH
T ss_pred EecccCCCCccccc-c------ccHHHHHHHHHH------cCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHH
Confidence 99999865443332 3 367788888777 23333321 12577899999987 46999999
Q ss_pred CCCcceEEEe-cCCHHHHHHHHHhhh
Q 013704 297 RDGRMEKFYW-APTREDRIGVCSGIF 321 (438)
Q Consensus 297 R~GRfd~~i~-lP~~e~R~~Il~~~l 321 (438)
| ||..+.. .|+.++...|+..++
T Consensus 1446 r--~F~vi~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1446 R--HAPILLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp T--TCCEEECCCCCHHHHHHHHHHHH
T ss_pred h--hceEEEeCCCCHHHHHHHHHHHH
Confidence 9 9977554 699999999987554
No 96
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.49 E-value=3.7e-07 Score=111.77 Aligned_cols=140 Identities=10% Similarity=0.092 Sum_probs=94.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCC
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 238 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r 238 (438)
..++++.||||||||.+++++|+.+|.+++.++|++-.+ ...+..+|..+. ..++.++|||++.+-..
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~-----~~Gaw~~~DE~nr~~~e- 712 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGIT-----QIGAWGCFDEFNRLDEK- 712 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHH-----HHTCEEEEETTTSSCHH-
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHH-----hcCCEeeehhhhhcChH-
Confidence 367899999999999999999999999999999986542 455667777663 33689999999977432
Q ss_pred CCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecC----CCCCCCccccCCCcceEEEe-cCCHHHH
Q 013704 239 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYW-APTREDR 313 (438)
Q Consensus 239 ~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN----~~~~Ld~aLlR~GRfd~~i~-lP~~e~R 313 (438)
.. ..-.+.+...+..+.+....+.+.|... .-.+...|++|.| ....|+++|++ ||-.+.. .|+.+..
T Consensus 713 ---vL-s~l~~~l~~i~~al~~~~~~i~~~g~~i-~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~Fr~v~m~~Pd~~~i 785 (2695)
T 4akg_A 713 ---VL-SAVSANIQQIQNGLQVGKSHITLLEEET-PLSPHTAVFITLNPGYNGRSELPENLKK--SFREFSMKSPQSGTI 785 (2695)
T ss_dssp ---HH-HHHHHHHHHHHHHHHHTCSEEECSSSEE-ECCTTCEEEEEECCCSSSSCCCCHHHHT--TEEEEECCCCCHHHH
T ss_pred ---HH-HHHHHHHHHHHHHHHcCCcEEeeCCcEE-ecCCCceEEEEeCCCccCcccccHHHHh--heEEEEeeCCCHHHH
Confidence 11 0111111111122223333455555411 2346677888998 56689999999 8844333 5999998
Q ss_pred HHHH
Q 013704 314 IGVC 317 (438)
Q Consensus 314 ~~Il 317 (438)
.+|+
T Consensus 786 ~ei~ 789 (2695)
T 4akg_A 786 AEMI 789 (2695)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8885
No 97
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.46 E-value=1.6e-06 Score=84.74 Aligned_cols=156 Identities=19% Similarity=0.228 Sum_probs=86.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEEEecccccc---------------CCCCC---------------------h
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------------GNAGE---------------------P 203 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s---------------~~~Ge---------------------~ 203 (438)
..++|+||+|+|||++++.+++..+ ++++++..... ...+. .
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPR 109 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccc
Confidence 5799999999999999999999986 55665432210 00000 0
Q ss_pred HHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEE
Q 013704 204 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 283 (438)
Q Consensus 204 ~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~ 283 (438)
...+..+++.....++...|.+|+|||++.+..... .....+...|..+.+ . ..++.+|+
T Consensus 110 ~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~------~~~~~~~~~L~~~~~-------------~-~~~~~~il 169 (350)
T 2qen_A 110 KLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS------RGGKELLALFAYAYD-------------S-LPNLKIIL 169 (350)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT------TTTHHHHHHHHHHHH-------------H-CTTEEEEE
T ss_pred cchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc------cchhhHHHHHHHHHH-------------h-cCCeEEEE
Confidence 012233333332223233499999999998864100 001233344444443 1 14677888
Q ss_pred ecCCCC---------CCCccccCCCcceEEEec--CCHHHHHHHHHhhhCCC--CCCHHHHH---HHHccCC
Q 013704 284 TGNDFS---------TLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTD--NVPKEDIV---KLVDTFP 339 (438)
Q Consensus 284 TTN~~~---------~Ld~aLlR~GRfd~~i~l--P~~e~R~~Il~~~l~~~--~v~~~~la---~l~~~~s 339 (438)
|+.... ....++. ||+...+.+ .+.++-.+++...+... .++.+.+. ..+.|++
T Consensus 170 ~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P 239 (350)
T 2qen_A 170 TGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIP 239 (350)
T ss_dssp EESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCH
T ss_pred ECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCH
Confidence 775431 1222333 366556664 47888888888766543 34555444 4445544
No 98
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.43 E-value=4.5e-07 Score=108.15 Aligned_cols=102 Identities=15% Similarity=0.218 Sum_probs=67.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEecccccc----C------------CCCChHHHHHHHHHHHH
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES----G------------NAGEPAKLIRQRYREAA 215 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s----~------------~~Ge~~~~ir~~f~~A~ 215 (438)
++.++.+++|+||||||||+||.+++.+. |..+.+++..+... . .....++.++.+++.+
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lv- 1501 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA- 1501 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHH-
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHH-
Confidence 67888999999999999999999998874 55667777654321 1 1223445555555444
Q ss_pred HHHHhCCceeEEeccccccccCC---CCC--ccccchhHHHHHHHHHhhc
Q 013704 216 DIIKKGKMCCLFINDLDAGAGRM---GGT--TQYTVNNQMVNATLMNIAD 260 (438)
Q Consensus 216 ~~~~~~~p~ILfIDEiD~l~~~r---~~~--~~~~~~~~~v~~~Ll~Lld 260 (438)
+..+|++|||||++.+.+.. +.. +......+.+.+.|.+|..
T Consensus 1502 ---r~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~ 1548 (2050)
T 3cmu_A 1502 ---RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 1548 (2050)
T ss_dssp ---HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHH
T ss_pred ---hcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHH
Confidence 48999999999999998742 111 1111134555566666555
No 99
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.41 E-value=3.3e-06 Score=82.54 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=30.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccc
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 194 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~ 194 (438)
..++|+||+|+|||++++.+++..+..++++++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 48999999999999999999999887777777654
No 100
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.32 E-value=3e-06 Score=82.27 Aligned_cols=41 Identities=10% Similarity=0.092 Sum_probs=30.2
Q ss_pred HHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC
Q 013704 144 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI 185 (438)
Q Consensus 144 ~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~ 185 (438)
....++++... ..+..+|+||||||||||++|.+||+..+.
T Consensus 90 ~~~l~~~l~~~-~~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 90 ASVFLGWATKK-FGKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp HHHHHHHHTTC-STTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhCC-CCCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 34455555431 133468999999999999999999998654
No 101
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.20 E-value=5.4e-06 Score=75.95 Aligned_cols=40 Identities=10% Similarity=0.061 Sum_probs=33.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccc
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 194 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~ 194 (438)
++.+...++|+||||+|||+++..++...+..+++++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4566678999999999999999999986677778777643
No 102
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.17 E-value=6.4e-06 Score=83.25 Aligned_cols=157 Identities=16% Similarity=0.239 Sum_probs=87.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCc--eEEEeccccccCCCCChHHHHHHHHHHH-----------HHHHHhCCceeE
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGIN--PIMMSAGELESGNAGEPAKLIRQRYREA-----------ADIIKKGKMCCL 226 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~--~i~vs~~~l~s~~~Ge~~~~ir~~f~~A-----------~~~~~~~~p~IL 226 (438)
..+|++|++||||+.+|+++....+.. |+.++|+.+.... .-..+|... ...++......|
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~------~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtl 226 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQEL------AESELFGHEKGAFTGALTRKKGKLELADQGTL 226 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTT------HHHHHHEECSCSSSSCCCCEECHHHHTTTSEE
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHH------HHHHhcCccccccCCcccccCChHhhcCCCeE
Confidence 349999999999999999999987543 9999998764221 111122100 000113346789
Q ss_pred EeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCCCCccccCCCcceE---
Q 013704 227 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK--- 303 (438)
Q Consensus 227 fIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~Ld~aLlR~GRfd~--- 303 (438)
|||||+.+.. .++..|+..+++-+...+++. ....-++.+|+|||.. ...+...|+|..
T Consensus 227 fldei~~l~~-------------~~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~rii~at~~~---l~~~v~~g~fr~dL~ 288 (368)
T 3dzd_A 227 FLDEVGELDQ-------------RVQAKLLRVLETGSFTRLGGN--QKIEVDIRVISATNKN---LEEEIKKGNFREDLY 288 (368)
T ss_dssp EEETGGGSCH-------------HHHHHHHHHHHHSEECCBTCC--CBEECCCEEEEEESSC---HHHHHHTTSSCHHHH
T ss_pred EecChhhCCH-------------HHHHHHHHHHHhCCcccCCCC--cceeeeeEEEEecCCC---HHHHHHcCCccHHHH
Confidence 9999998843 233556665552222222221 1123467899999853 122334444433
Q ss_pred ------EEecCCHHHH----HHHHHhhhCC---------CCCCHHHHHHHHc-cCCc
Q 013704 304 ------FYWAPTREDR----IGVCSGIFRT---------DNVPKEDIVKLVD-TFPG 340 (438)
Q Consensus 304 ------~i~lP~~e~R----~~Il~~~l~~---------~~v~~~~la~l~~-~~sg 340 (438)
.+.+|...+| ..+++.++.. ..++.+.+..+.. .|+|
T Consensus 289 ~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpG 345 (368)
T 3dzd_A 289 YRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKG 345 (368)
T ss_dssp HHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTT
T ss_pred HHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCc
Confidence 4556655444 3444444321 2355666666554 3455
No 103
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.10 E-value=7.3e-06 Score=74.45 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCce
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINP 187 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~ 187 (438)
.+.|.||+|+|||+|+++|+..+++.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999987544
No 104
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.06 E-value=6.6e-06 Score=83.62 Aligned_cols=106 Identities=16% Similarity=0.183 Sum_probs=65.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC---CceEEEeccccccC-------------CCCChHHHHHHHHHHHHHHHHhCCc
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESG-------------NAGEPAKLIRQRYREAADIIKKGKM 223 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg---~~~i~vs~~~l~s~-------------~~Ge~~~~ir~~f~~A~~~~~~~~p 223 (438)
..+||+|++|||||++|++|..... .+|+.++|+.+... +.|.... ....|. ....
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~-~~g~~~-------~a~~ 232 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS-KEGFFE-------LADG 232 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSC-BCCHHH-------HTTT
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccc-cCCcee-------eCCC
Confidence 4579999999999999999998854 68999999865421 1111000 012233 3346
Q ss_pred eeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCC
Q 013704 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 288 (438)
Q Consensus 224 ~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~ 288 (438)
.+||||||+.+.. .++..|+..+++-+...+++. .....++.||+|||..
T Consensus 233 gtlfldei~~l~~-------------~~q~~Ll~~l~~~~~~~~g~~--~~~~~~~rii~at~~~ 282 (387)
T 1ny5_A 233 GTLFLDEIGELSL-------------EAQAKLLRVIESGKFYRLGGR--KEIEVNVRILAATNRN 282 (387)
T ss_dssp SEEEEESGGGCCH-------------HHHHHHHHHHHHSEECCBTCC--SBEECCCEEEEEESSC
T ss_pred cEEEEcChhhCCH-------------HHHHHHHHHHhcCcEEeCCCC--ceeeccEEEEEeCCCC
Confidence 8999999998843 233556665552221122222 1223578899999973
No 105
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.02 E-value=1.9e-06 Score=89.77 Aligned_cols=126 Identities=13% Similarity=0.062 Sum_probs=73.3
Q ss_pred cEEEEEcCCCCcHHHHHHHH-HHHhCCceEEEecc-----ccccCCCCChHHHH-HHHHHHHHHHHHhCCceeEEecccc
Q 013704 160 LILGIWGGKGQGKSFQCELV-FAKMGINPIMMSAG-----ELESGNAGEPAKLI-RQRYREAADIIKKGKMCCLFINDLD 232 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aI-A~~lg~~~i~vs~~-----~l~s~~~Ge~~~~i-r~~f~~A~~~~~~~~p~ILfIDEiD 232 (438)
.++||.|+||| ||++|+++ ++-+... ++++.- .|.....+.+...+ ...+. .....++|||||+
T Consensus 240 ihVLL~G~PGt-KS~Lar~i~~~i~pR~-~ft~g~~ss~~gLt~s~r~~tG~~~~~G~l~-------LAdgGvl~lDEIn 310 (506)
T 3f8t_A 240 LHVLLAGYPVV-CSEILHHVLDHLAPRG-VYVDLRRTELTDLTAVLKEDRGWALRAGAAV-------LADGGILAVDHLE 310 (506)
T ss_dssp CCEEEESCHHH-HHHHHHHHHHHTCSSE-EEEEGGGCCHHHHSEEEEESSSEEEEECHHH-------HTTTSEEEEECCT
T ss_pred eeEEEECCCCh-HHHHHHHHHHHhCCCe-EEecCCCCCccCceEEEEcCCCcccCCCeeE-------EcCCCeeehHhhh
Confidence 37999999999 99999999 6544322 222210 01100000000000 00111 2336799999998
Q ss_pred ccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC-----------CCCccccCCCcc
Q 013704 233 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----------TLYAPLIRDGRM 301 (438)
Q Consensus 233 ~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~-----------~Ld~aLlR~GRf 301 (438)
.+-. .+...|++.++ ...|.+.|. ....++.||+|+|... .|+++++. ||
T Consensus 311 ~~~~-------------~~qsaLlEaME-e~~VtI~G~---~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RF 371 (506)
T 3f8t_A 311 GAPE-------------PHRWALMEAMD-KGTVTVDGI---ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HF 371 (506)
T ss_dssp TCCH-------------HHHHHHHHHHH-HSEEEETTE---EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TC
T ss_pred hCCH-------------HHHHHHHHHHh-CCcEEECCE---EcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--he
Confidence 7733 23356666555 344556654 4457888999999875 78999999 99
Q ss_pred eEEEec---CCHHHH
Q 013704 302 EKFYWA---PTREDR 313 (438)
Q Consensus 302 d~~i~l---P~~e~R 313 (438)
|.++.+ |+.+..
T Consensus 372 DLi~i~~d~pd~e~d 386 (506)
T 3f8t_A 372 DLIAFLGVDPRPGEP 386 (506)
T ss_dssp SEEEETTC-------
T ss_pred eeEEEecCCCChhHh
Confidence 998883 665553
No 106
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.00 E-value=1.4e-05 Score=74.30 Aligned_cols=83 Identities=12% Similarity=0.141 Sum_probs=53.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH--h-------CCceEEEeccccccC--------CCC---------------C
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAK--M-------GINPIMMSAGELESG--------NAG---------------E 202 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~--l-------g~~~i~vs~~~l~s~--------~~G---------------e 202 (438)
++.+...++|+||||+|||++++.++.. + +...++++....... ..| .
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 5566678999999999999999999995 2 445677765441000 011 0
Q ss_pred hHHHHHHHHHHHHHHHHhCCceeEEeccccccccC
Q 013704 203 PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 237 (438)
Q Consensus 203 ~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~ 237 (438)
.......++..+.+.++...|.+|+|||+..+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 11112223333444455678999999999988653
No 107
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.99 E-value=2.4e-05 Score=96.87 Aligned_cols=139 Identities=17% Similarity=0.143 Sum_probs=94.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCC
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 239 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~ 239 (438)
.|..+.||+|||||.+++.+|+.+|.+++.++|++-. ....+..+|.-+. ...+..+|||++.+-..
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~------d~~~~g~i~~G~~-----~~GaW~cfDEfNrl~~~-- 671 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGF------DLQAMSRIFVGLC-----QCGAWGCFDEFNRLEER-- 671 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCC------CHHHHHHHHHHHH-----HHTCEEEEETTTSSCHH--
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCC------CHHHHHHHHhhHh-----hcCcEEEehhhhcCCHH--
Confidence 4677999999999999999999999999999998644 2455666776553 34778889999877322
Q ss_pred CCccccchhHHHHHHHHHhhcCCCccccC-CccccCCCCCceEEEecC----CCCCCCccccCCCcceEEEe-cCCHHHH
Q 013704 240 GTTQYTVNNQMVNATLMNIADNPTNVQLP-GMYNQEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYW-APTREDR 313 (438)
Q Consensus 240 ~~~~~~~~~~~v~~~Ll~Lld~~~~v~ld-g~~~~~~~~~v~VI~TTN----~~~~Ld~aLlR~GRfd~~i~-lP~~e~R 313 (438)
--.+-.+.+......+.+....+.+. |... .-.+..-|++|.| ....||++|+. ||--+.. .|+.+..
T Consensus 672 ---vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i-~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lFr~v~m~~Pd~~~i 745 (3245)
T 3vkg_A 672 ---ILSAVSQQIQTIQVALKENSKEVELLGGKNI-SLHQDMGIFVTMNPGYAGRSNLPDNLKK--LFRSMAMIKPDREMI 745 (3245)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTCSEECCC---CE-ECCTTCEEEECBCCCGGGCCCSCHHHHT--TEEEEECCSCCHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHcCCCeEEecCCCEE-eecCCeEEEEEeCCCccCcccChHHHHh--hcEEEEEeCCCHHHH
Confidence 01111122222222334445566666 5311 2346778889998 45689999999 8855443 6999998
Q ss_pred HHHH
Q 013704 314 IGVC 317 (438)
Q Consensus 314 ~~Il 317 (438)
.+|+
T Consensus 746 ~ei~ 749 (3245)
T 3vkg_A 746 AQVM 749 (3245)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8885
No 108
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=97.94 E-value=1.3e-05 Score=62.92 Aligned_cols=51 Identities=16% Similarity=0.226 Sum_probs=45.8
Q ss_pred cCCHHHHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHH
Q 013704 307 APTREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360 (438)
Q Consensus 307 lP~~e~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~ 360 (438)
+|+.++|.+||+.++.+ .+++++.+++.++||+|+||. ++|..+...++++
T Consensus 2 lPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~---~l~~eA~~~a~~~ 56 (78)
T 3kw6_A 2 PPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVK---GVCTEAGMYALRE 56 (78)
T ss_dssp CCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHH---HHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHh
Confidence 69999999999988875 477899999999999999999 8999988888876
No 109
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=97.94 E-value=1.3e-05 Score=64.45 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=46.8
Q ss_pred cCCHHHHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHH
Q 013704 307 APTREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 361 (438)
Q Consensus 307 lP~~e~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~ 361 (438)
.|+.++|.+||+.++++ .+++++.|++.+++|+|+||. ++|..+...++++.
T Consensus 10 ~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~---~l~~eAa~~alr~~ 65 (86)
T 2krk_A 10 HPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVK---GVCTEAGMYALRER 65 (86)
T ss_dssp CCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHH---HHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHc
Confidence 59999999999988875 478899999999999999999 99999988888874
No 110
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.88 E-value=7.9e-05 Score=68.29 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEec
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 192 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~ 192 (438)
++.+...++|+||||+|||++++.++... +..+++++.
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 44555789999999999999999999653 455555553
No 111
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.87 E-value=3.5e-05 Score=77.78 Aligned_cols=83 Identities=14% Similarity=0.151 Sum_probs=55.3
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCC----CC--------ChHHHHHHHHHHHHHHH
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN----AG--------EPAKLIRQRYREAADII 218 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~----~G--------e~~~~ir~~f~~A~~~~ 218 (438)
.|+.+...++|+||||+|||+||..++..+ +..+++++........ .| .....+.++...+..++
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~ 135 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELV 135 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHh
Confidence 356666789999999999999999999873 5677777765422100 00 00011223334444445
Q ss_pred HhCCceeEEecccccccc
Q 013704 219 KKGKMCCLFINDLDAGAG 236 (438)
Q Consensus 219 ~~~~p~ILfIDEiD~l~~ 236 (438)
+...+.+++||.+..+.+
T Consensus 136 ~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 136 RSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HTSCCSEEEEECTTTCCC
T ss_pred hhcCCCeEEehHhhhhcC
Confidence 568899999999998876
No 112
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.85 E-value=3e-05 Score=92.80 Aligned_cols=82 Identities=16% Similarity=0.183 Sum_probs=61.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCC----CC--------ChHHHHHHHHHHHHHHHH
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN----AG--------EPAKLIRQRYREAADIIK 219 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~----~G--------e~~~~ir~~f~~A~~~~~ 219 (438)
|+.+...++|+|+||+|||+||..+|..+ +.++++++..+....+ .| ..+..+..++..++.+.+
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 56777899999999999999999999985 4468888876544332 12 122335666777765555
Q ss_pred hCCceeEEecccccccc
Q 013704 220 KGKMCCLFINDLDAGAG 236 (438)
Q Consensus 220 ~~~p~ILfIDEiD~l~~ 236 (438)
...|++||||.+..+..
T Consensus 808 ~~~~~LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTP 824 (2050)
T ss_dssp HTCCSEEEESCGGGCCC
T ss_pred ccCCCEEEEcchhhhcc
Confidence 68899999999999976
No 113
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.82 E-value=2.6e-05 Score=69.20 Aligned_cols=35 Identities=14% Similarity=0.104 Sum_probs=30.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEecc
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 193 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~ 193 (438)
|..|+|.||||+|||++++++++.++.+++.++..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 46799999999999999999999999888876543
No 114
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.81 E-value=2.8e-05 Score=78.12 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=54.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccC----CCCCh--------HHHHHHHHHHHHHHHH
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG----NAGEP--------AKLIRQRYREAADIIK 219 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~----~~Ge~--------~~~ir~~f~~A~~~~~ 219 (438)
|+.+...++|+||||+|||+||..++... +..+++++...-... ..|-. ...+.+++..+..+++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 55666789999999999999999998763 567777776432211 01100 0012334444444555
Q ss_pred hCCceeEEecccccccc
Q 013704 220 KGKMCCLFINDLDAGAG 236 (438)
Q Consensus 220 ~~~p~ILfIDEiD~l~~ 236 (438)
...|.+|+||++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 77899999999999974
No 115
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.79 E-value=7.6e-05 Score=75.52 Aligned_cols=83 Identities=16% Similarity=0.153 Sum_probs=55.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCC----CCCh--------HHHHHHHHHHHHHHHH
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN----AGEP--------AKLIRQRYREAADIIK 219 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~----~Ge~--------~~~ir~~f~~A~~~~~ 219 (438)
|+.+...++|+||||+|||++|..+|... +.++++++...-.... .|.. ...+.+++..+..+++
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 56666789999999999999999998773 6677888765422110 0100 0012233444444445
Q ss_pred hCCceeEEeccccccccC
Q 013704 220 KGKMCCLFINDLDAGAGR 237 (438)
Q Consensus 220 ~~~p~ILfIDEiD~l~~~ 237 (438)
...+.+|+||.+..+.++
T Consensus 150 ~~~~~lVVIDsl~~l~~~ 167 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTPR 167 (366)
T ss_dssp TTCCSEEEEECTTTCCCS
T ss_pred cCCCCEEEEeChHHhccc
Confidence 678999999999999853
No 116
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.73 E-value=0.00016 Score=67.30 Aligned_cols=38 Identities=16% Similarity=0.202 Sum_probs=28.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHH--H--hCCceEEEec
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFA--K--MGINPIMMSA 192 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~--~--lg~~~i~vs~ 192 (438)
++.+...++|.||+|+|||+|+++++. . .+...+.+..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 455667899999999999999999983 2 3444444443
No 117
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.72 E-value=4.3e-05 Score=75.58 Aligned_cols=82 Identities=9% Similarity=0.165 Sum_probs=54.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCceEEEecccccc--------CCCCC---------------
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELES--------GNAGE--------------- 202 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l---------g~~~i~vs~~~l~s--------~~~Ge--------------- 202 (438)
++.....++|+||||+|||++|..+|... +..+++++...... ...|-
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 55666789999999999999999999874 55677777654210 00010
Q ss_pred hHHHHHHHHHHHHHHHHh-CCceeEEecccccccc
Q 013704 203 PAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAG 236 (438)
Q Consensus 203 ~~~~ir~~f~~A~~~~~~-~~p~ILfIDEiD~l~~ 236 (438)
....+..++..+...++. ..+.+|+||.+..+..
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 111122344445555556 8899999999998864
No 118
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.70 E-value=6e-05 Score=75.97 Aligned_cols=82 Identities=16% Similarity=0.168 Sum_probs=53.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccccCC----CCChH--------HHHHHHHHHHHHHHH
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN----AGEPA--------KLIRQRYREAADIIK 219 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s~~----~Ge~~--------~~ir~~f~~A~~~~~ 219 (438)
|+.+...++|+||||+|||++|..+|... +.++++++........ .|... ....++...+..+++
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 56666889999999999999999998763 6678888774322100 01000 011223333333444
Q ss_pred hCCceeEEecccccccc
Q 013704 220 KGKMCCLFINDLDAGAG 236 (438)
Q Consensus 220 ~~~p~ILfIDEiD~l~~ 236 (438)
...+.+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 67899999999999875
No 119
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.69 E-value=0.00017 Score=71.20 Aligned_cols=147 Identities=12% Similarity=0.077 Sum_probs=89.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CC-ceEEEeccccccCCCCChHHHHHHHHHHHHHHHHhCCceeEEecccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GI-NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 232 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l---g~-~~i~vs~~~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 232 (438)
+.+...|||||+|+||+..++.+++.+ +. ++..+... ++ ..++++.+.+...--.....|++|||++
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~--~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------PN--TDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------TT--CCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------CC--CCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 346789999999999999999999875 32 21222111 11 2345555555322224567899999998
Q ss_pred c-cccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCC------CCCCccccCCCcceEEE
Q 013704 233 A-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF------STLYAPLIRDGRMEKFY 305 (438)
Q Consensus 233 ~-l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~------~~Ld~aLlR~GRfd~~i 305 (438)
. +... ....|+..++ +..+++.+|.+|+.+ ..+.+++.. |...+-
T Consensus 87 ~kl~~~-------------~~~aLl~~le-------------~p~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~~~~~ 138 (343)
T 1jr3_D 87 NGPNAA-------------INEQLLTLTG-------------LLHDDLLLIVRGNKLSKAQENAAWFTALAN--RSVQVT 138 (343)
T ss_dssp SCCCTT-------------HHHHHHHHHT-------------TCBTTEEEEEEESCCCTTTTTSHHHHHHTT--TCEEEE
T ss_pred CCCChH-------------HHHHHHHHHh-------------cCCCCeEEEEEcCCCChhhHhhHHHHHHHh--CceEEE
Confidence 7 4211 2244666554 344556666665553 356777777 554333
Q ss_pred e-cCCHHHHHHHHHhhhCCCC--CCHHHHHHHHccCCc
Q 013704 306 W-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDTFPG 340 (438)
Q Consensus 306 ~-lP~~e~R~~Il~~~l~~~~--v~~~~la~l~~~~sg 340 (438)
. .|+.++....++..+...+ ++.+.+..+++...|
T Consensus 139 ~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 176 (343)
T 1jr3_D 139 CQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEG 176 (343)
T ss_dssp ECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTT
T ss_pred eeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch
Confidence 3 4677778877777776555 556666666665544
No 120
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.69 E-value=4.6e-05 Score=76.15 Aligned_cols=82 Identities=13% Similarity=0.065 Sum_probs=53.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCceEEEeccccccC--------CCCC-h-------------
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG--------NAGE-P------------- 203 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l---------g~~~i~vs~~~l~s~--------~~Ge-~------------- 203 (438)
++.....++|+||||+|||++|..+|... +..+++++....... ..|- .
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 56666789999999999999999999872 456777776542110 0010 0
Q ss_pred -HHHHHHHHHHHHHHHHh--CCceeEEecccccccc
Q 013704 204 -AKLIRQRYREAADIIKK--GKMCCLFINDLDAGAG 236 (438)
Q Consensus 204 -~~~ir~~f~~A~~~~~~--~~p~ILfIDEiD~l~~ 236 (438)
...+..+...+...++. ..+.+|+||.+..+..
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 01111233334444555 7899999999999874
No 121
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.65 E-value=0.00012 Score=67.24 Aligned_cols=29 Identities=17% Similarity=0.320 Sum_probs=25.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
++.+...+.|.||+|+|||+|++.++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 55566789999999999999999999854
No 122
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.65 E-value=7.3e-05 Score=88.44 Aligned_cols=82 Identities=16% Similarity=0.191 Sum_probs=59.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEecccccc----CCCCC--------hHHHHHHHHHHHHHHHH
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES----GNAGE--------PAKLIRQRYREAADIIK 219 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~s----~~~Ge--------~~~~ir~~f~~A~~~~~ 219 (438)
|+.+...++|+||||+|||+||..+|... +.++++++..+... ...|- .+..+.+++..++.+.+
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 57778899999999999999999998874 45777877654331 11120 11134456666665566
Q ss_pred hCCceeEEecccccccc
Q 013704 220 KGKMCCLFINDLDAGAG 236 (438)
Q Consensus 220 ~~~p~ILfIDEiD~l~~ 236 (438)
...|.+|+||.+..+.+
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 78999999999999975
No 123
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.65 E-value=0.00034 Score=64.85 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=29.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCceEEEec
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 192 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs~ 192 (438)
++.+...++|+||||+|||+++..++.. .+..+++++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4555678999999999999999888765 3556666654
No 124
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.63 E-value=0.0002 Score=71.83 Aligned_cols=82 Identities=17% Similarity=0.176 Sum_probs=54.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC---------CceEEEecccccc--------CCCCC---------------
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGELES--------GNAGE--------------- 202 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~lg---------~~~i~vs~~~l~s--------~~~Ge--------------- 202 (438)
++.....++|+||||+|||+|++.++.... -.+++++...... ...+-
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~ 206 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAF 206 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecC
Confidence 566667899999999999999999999862 3456776643210 00000
Q ss_pred hHHHHHHHHHHHHHHHHh-----CCceeEEecccccccc
Q 013704 203 PAKLIRQRYREAADIIKK-----GKMCCLFINDLDAGAG 236 (438)
Q Consensus 203 ~~~~ir~~f~~A~~~~~~-----~~p~ILfIDEiD~l~~ 236 (438)
......+++..+..+++. ..|.+|+|||+-++..
T Consensus 207 ~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld 245 (349)
T 1pzn_A 207 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 245 (349)
T ss_dssp SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHH
T ss_pred ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhh
Confidence 011223445555555555 7899999999988763
No 125
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.62 E-value=9.4e-05 Score=72.07 Aligned_cols=62 Identities=15% Similarity=0.206 Sum_probs=43.7
Q ss_pred ChhhHHHHHHHHHHhhhcC-CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccc
Q 013704 135 APAFMDKVVVHITKNFLNL-PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196 (438)
Q Consensus 135 ~~~~~d~~~~~i~k~~l~~-~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~ 196 (438)
++.-..++...+...++.. .....|..++|.||||+|||++|+.++++++..++.+++..+.
T Consensus 8 s~~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R 70 (287)
T 1gvn_B 8 TDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK 70 (287)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH
Confidence 3344445555555555542 2345678899999999999999999999986566777765544
No 126
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.62 E-value=0.00023 Score=67.66 Aligned_cols=55 Identities=13% Similarity=0.219 Sum_probs=40.6
Q ss_pred HHHHHHHHhhhc-CCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEecccc
Q 013704 141 KVVVHITKNFLN-LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 195 (438)
Q Consensus 141 ~~~~~i~k~~l~-~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l 195 (438)
.+...+.+.++. ......|..++|.||||+|||++++.+++.++..++.++...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 13 HALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred HHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 333334444443 2345667899999999999999999999999877777777665
No 127
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.61 E-value=0.00015 Score=67.24 Aligned_cols=119 Identities=12% Similarity=0.104 Sum_probs=75.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH---hCCceEEEeccc---------cccCC-----------CCC------hHHHHHHH
Q 013704 160 LILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGE---------LESGN-----------AGE------PAKLIRQR 210 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs~~~---------l~s~~-----------~Ge------~~~~ir~~ 210 (438)
..|++|+++|.|||++|-.+|-. .|..+..+..-. +...+ .-. .....+..
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 45889999999999999998887 477777663211 22221 111 12345667
Q ss_pred HHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCCC
Q 013704 211 YREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 290 (438)
Q Consensus 211 f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~~ 290 (438)
+..+.+.+......+|+|||+-....-.- ..... +++++. ....+.-||+|+|.+
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~------l~~~e----v~~~l~-------------~Rp~~~~vIlTGr~a-- 163 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDY------LPLEE----VISALN-------------ARPGHQTVIITGRGC-- 163 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTS------SCHHH----HHHHHH-------------TSCTTCEEEEECSSC--
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCC------CCHHH----HHHHHH-------------hCcCCCEEEEECCCC--
Confidence 77777666677889999999976533211 00112 333333 456778899999985
Q ss_pred CCccccCCCcceEEEe
Q 013704 291 LYAPLIRDGRMEKFYW 306 (438)
Q Consensus 291 Ld~aLlR~GRfd~~i~ 306 (438)
++.|+. .-|.+-+
T Consensus 164 -p~~l~e--~AD~VTe 176 (196)
T 1g5t_A 164 -HRDILD--LADTVSE 176 (196)
T ss_dssp -CHHHHH--HCSEEEE
T ss_pred -cHHHHH--hCcceee
Confidence 566666 5555554
No 128
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.61 E-value=3.6e-05 Score=68.86 Aligned_cols=32 Identities=13% Similarity=-0.133 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceEEE
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~v 190 (438)
+..|+|.||||+|||++++.+|+.+|.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 56799999999999999999999999987754
No 129
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.59 E-value=5.9e-05 Score=67.60 Aligned_cols=34 Identities=12% Similarity=0.249 Sum_probs=29.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~ 189 (438)
...|..|+|.|+||+|||++++.+++.++.+++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 3467889999999999999999999999987654
No 130
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.54 E-value=0.00022 Score=66.20 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=29.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH----hCCceEEEec
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAK----MGINPIMMSA 192 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~----lg~~~i~vs~ 192 (438)
|+.+...++|+|+||+|||.+|..+|.. .+.++++++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 4556678999999999999999877643 3667777664
No 131
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.53 E-value=5.4e-05 Score=67.59 Aligned_cols=35 Identities=20% Similarity=0.170 Sum_probs=29.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEE
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~v 190 (438)
...+..|+|+|+||+|||++++.+++.++..++.+
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 34456799999999999999999999999876643
No 132
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.53 E-value=0.00023 Score=72.84 Aligned_cols=83 Identities=14% Similarity=0.133 Sum_probs=52.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCceEEEeccccccC--------CCCC---------------
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG--------NAGE--------------- 202 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l---------g~~~i~vs~~~l~s~--------~~Ge--------------- 202 (438)
|+.+-..++|+||||+|||+|++.+|-.. +...++++....... ..|-
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 56666789999999999999999877543 233677765432110 0110
Q ss_pred hHHHHHHHHHHHHHHHHhCCceeEEeccccccccC
Q 013704 203 PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 237 (438)
Q Consensus 203 ~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~ 237 (438)
.......+...+...+....|.+|+||++-.+...
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 01112233444445555788999999999887654
No 133
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.53 E-value=4.1e-05 Score=69.75 Aligned_cols=31 Identities=13% Similarity=-0.066 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH---hCCceEEE
Q 013704 160 LILGIWGGKGQGKSFQCELVFAK---MGINPIMM 190 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~---lg~~~i~v 190 (438)
..++++||||+|||+++..++.. .|..++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 46889999999999998666655 35555544
No 134
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.52 E-value=0.0002 Score=68.36 Aligned_cols=39 Identities=18% Similarity=0.172 Sum_probs=32.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH---hCCceEEEeccccc
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELE 196 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs~~~l~ 196 (438)
.+..|+|.|+||+|||++|+.+++. .|.+++.++...+.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 3567999999999999999999998 78888766665443
No 135
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.50 E-value=7.7e-05 Score=70.09 Aligned_cols=43 Identities=30% Similarity=0.516 Sum_probs=33.9
Q ss_pred cCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccc
Q 013704 152 NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 196 (438)
Q Consensus 152 ~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~ 196 (438)
.....+.|+.|+|.||||+||+++|+.|++..|++ .++.+++.
T Consensus 22 ~~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdll 64 (217)
T 3umf_A 22 TDQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLL 64 (217)
T ss_dssp --CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHH
T ss_pred cchhccCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHH
Confidence 34567888999999999999999999999999876 45554443
No 136
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.50 E-value=0.00012 Score=72.85 Aligned_cols=82 Identities=16% Similarity=0.150 Sum_probs=50.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCceEEEeccccccC----CCCC-h-------HHHHHHH-HHHHHH
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESG----NAGE-P-------AKLIRQR-YREAAD 216 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l-----g~~~i~vs~~~l~s~----~~Ge-~-------~~~ir~~-f~~A~~ 216 (438)
|+.+. .++|+||||+|||+||..++... +-.+++++..+-... -.|- . +....++ +..+..
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 44433 57899999999999988877663 667888887542210 0110 0 0012222 332222
Q ss_pred H--HHhCCceeEEeccccccccC
Q 013704 217 I--IKKGKMCCLFINDLDAGAGR 237 (438)
Q Consensus 217 ~--~~~~~p~ILfIDEiD~l~~~ 237 (438)
+ ++...|.+|+||-+-++.++
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC
T ss_pred HHHhhccCceEEEEecccccccc
Confidence 2 35778999999999999864
No 137
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.48 E-value=7.1e-05 Score=68.26 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=29.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEE
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~v 190 (438)
.+...|+|.||||+|||++++.+|+.++.+++..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 4456899999999999999999999999987654
No 138
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.45 E-value=9.2e-05 Score=67.36 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=30.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEE
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~v 190 (438)
...|..|+|.|+||+|||++|+.+++.++.+++.+
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 45567899999999999999999999999886554
No 139
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.42 E-value=0.00024 Score=73.51 Aligned_cols=38 Identities=11% Similarity=0.028 Sum_probs=30.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh----CCceEEEec
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 192 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l----g~~~i~vs~ 192 (438)
|..+...++|.|+||+|||+++..+|... |.++++++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 56666789999999999999999988863 557777664
No 140
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.41 E-value=8.6e-05 Score=66.30 Aligned_cols=31 Identities=35% Similarity=0.705 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~ 189 (438)
|..|+|.|+||+|||++|+.+++.++.+++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 6789999999999999999999999986543
No 141
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.40 E-value=0.00071 Score=70.10 Aligned_cols=104 Identities=15% Similarity=0.160 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEE
Q 013704 203 PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 282 (438)
Q Consensus 203 ~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI 282 (438)
.+...+...+.|. ...|||+||+|+++.+.++ ...++....|++.|+++++. +.+.. .|......+|.+|
T Consensus 237 ~~~~~~~ai~~ae------~~~il~~DEidki~~~~~~-~~~D~s~egvq~aLL~~le~-~~~~~--~~~~~d~~~ilfI 306 (444)
T 1g41_A 237 PEELKQKAIDAVE------QNGIVFIDEIDKICKKGEY-SGADVSREGVQRDLLPLVEG-STVST--KHGMVKTDHILFI 306 (444)
T ss_dssp HHHHHHHHHHHHH------HHCEEEEETGGGGSCCSSC-SSSHHHHHHHHHHHHHHHHC-CEEEE--TTEEEECTTCEEE
T ss_pred HHHHHHHHHHHhc------cCCeeeHHHHHHHhhccCC-CCCCchHHHHHHHHHHHhcc-ccccc--ccceecCCcEEEE
Confidence 3444455555442 2568999999999866432 34455666788999999984 33222 2333457889999
Q ss_pred Eec----CCCCCCCccccCCCcceEEEec--CCHHHHHHHHH
Q 013704 283 VTG----NDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS 318 (438)
Q Consensus 283 ~TT----N~~~~Ld~aLlR~GRfd~~i~l--P~~e~R~~Il~ 318 (438)
||+ +.+..+-|+|+. ||+..+.+ .+.++..+|+.
T Consensus 307 ~~gaf~~~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 307 ASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp EEECCSSCCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred eccccccCChhhcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 998 234445578888 99998886 68899999983
No 142
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.40 E-value=0.0003 Score=66.38 Aligned_cols=74 Identities=11% Similarity=0.028 Sum_probs=44.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccc-------cccCCCCCh-----HHHHHHHHHHHHHHHHhCCce
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE-------LESGNAGEP-----AKLIRQRYREAADIIKKGKMC 224 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~-------l~s~~~Ge~-----~~~ir~~f~~A~~~~~~~~p~ 224 (438)
..++++||||+|||+++..++..+ |..++.+.... +.+. .|-. .....++++.+.+......+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 567789999999999988887774 55666653221 2222 1211 001223454443222234689
Q ss_pred eEEecccccc
Q 013704 225 CLFINDLDAG 234 (438)
Q Consensus 225 ILfIDEiD~l 234 (438)
+|+|||+.-+
T Consensus 92 vViIDEaQ~l 101 (223)
T 2b8t_A 92 VIGIDEVQFF 101 (223)
T ss_dssp EEEECSGGGS
T ss_pred EEEEecCccC
Confidence 9999999754
No 143
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.38 E-value=0.0001 Score=66.11 Aligned_cols=33 Identities=33% Similarity=0.533 Sum_probs=28.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEE
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~v 190 (438)
.+..|+|.|+||+|||++|+.+++.++.+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 456899999999999999999999999876543
No 144
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.38 E-value=0.00067 Score=69.94 Aligned_cols=39 Identities=13% Similarity=-0.008 Sum_probs=31.3
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHh----CCceEEEec
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 192 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~l----g~~~i~vs~ 192 (438)
.|..+...++|.|+||+|||++|..+|... |.++++++.
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 366666789999999999999999988763 567777665
No 145
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.37 E-value=0.00013 Score=63.82 Aligned_cols=31 Identities=16% Similarity=-0.060 Sum_probs=27.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEEe
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs 191 (438)
.|+|.||||+|||++++.+++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5889999999999999999999998875443
No 146
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.37 E-value=9.2e-05 Score=66.19 Aligned_cols=30 Identities=20% Similarity=0.164 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEE
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~v 190 (438)
.|+|.|+||+|||++|+.+++.+|++++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 489999999999999999999999887643
No 147
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.35 E-value=0.00034 Score=68.73 Aligned_cols=82 Identities=13% Similarity=0.164 Sum_probs=52.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------------C----CceEEEecccccc-C-------CCC------
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---------------G----INPIMMSAGELES-G-------NAG------ 201 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l---------------g----~~~i~vs~~~l~s-~-------~~G------ 201 (438)
|+.+...++|+||||+|||++|..+|... | ..+++++...-.. . -.|
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 55666789999999999999999999863 2 4667777654210 0 000
Q ss_pred ---------ChHHHHHHHHHHHHHHHHh-CCceeEEecccccccc
Q 013704 202 ---------EPAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAG 236 (438)
Q Consensus 202 ---------e~~~~ir~~f~~A~~~~~~-~~p~ILfIDEiD~l~~ 236 (438)
.....+..++..+...++. ..+.+|+||.+..+..
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 218 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR 218 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHH
Confidence 0011111233334444445 7899999999998864
No 148
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.35 E-value=0.00011 Score=66.32 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH-hCCceEEE
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAK-MGINPIMM 190 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~-lg~~~i~v 190 (438)
.+..|+|.|+||||||++++.+++. +|++++.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 3567999999999999999999999 78776543
No 149
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.34 E-value=0.00012 Score=64.50 Aligned_cols=31 Identities=19% Similarity=0.104 Sum_probs=28.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEEE
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~v 190 (438)
..|+|.|+||||||++++.+|+.+|++++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4799999999999999999999999987754
No 150
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.33 E-value=0.00016 Score=66.80 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=28.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEE
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~v 190 (438)
+.+..|+|.|+||+|||++|+.+|+.++.+++..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 3467899999999999999999999999866543
No 151
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.30 E-value=0.00017 Score=64.23 Aligned_cols=33 Identities=27% Similarity=0.511 Sum_probs=28.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEE
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~v 190 (438)
.|..|+|.|+||+|||++|+.+++.++.+++..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 457899999999999999999999999766543
No 152
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.28 E-value=0.00016 Score=64.56 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=26.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceE
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPI 188 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i 188 (438)
+..|+|.||||+|||++++.+++.+|.+++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 457899999999999999999999987654
No 153
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=97.28 E-value=0.00016 Score=58.09 Aligned_cols=50 Identities=14% Similarity=0.089 Sum_probs=43.5
Q ss_pred CHHHHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHH
Q 013704 309 TREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 361 (438)
Q Consensus 309 ~~e~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~ 361 (438)
+.++|.+||+.++++ .+++++.|++.++||+|+||. ++|..+...++++.
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~---~l~~eAa~~a~r~~ 55 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELR---SVCTEAGMFAIRAR 55 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHH---HHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHH---HHHHHHHHHHHHhc
Confidence 457899999988765 467889999999999999999 99999998888874
No 154
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.28 E-value=0.00015 Score=65.26 Aligned_cols=31 Identities=39% Similarity=0.592 Sum_probs=27.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~ 189 (438)
|..|+|.|+||+|||++|+.+++.++.+++.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 5679999999999999999999999976554
No 155
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.27 E-value=0.00017 Score=64.02 Aligned_cols=29 Identities=17% Similarity=0.114 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~ 189 (438)
.|+|.||||+|||++++.+|+.++++++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 48899999999999999999999987654
No 156
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.27 E-value=0.00012 Score=64.95 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCceE
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPI 188 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i 188 (438)
.|..|+|.|+||+|||++|+.+++.++.+++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 3568999999999999999999999999876
No 157
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.27 E-value=0.00012 Score=64.58 Aligned_cols=28 Identities=29% Similarity=0.256 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH-HhCCc
Q 013704 159 PLILGIWGGKGQGKSFQCELVFA-KMGIN 186 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~-~lg~~ 186 (438)
|..|+|.||||+|||++|+.+++ ..+..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~ 30 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFY 30 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcE
Confidence 56799999999999999999999 45543
No 158
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.27 E-value=0.00018 Score=63.46 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=26.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceE
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPI 188 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i 188 (438)
+..++|.||||+|||++++.+|..++.+++
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 346899999999999999999999987554
No 159
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.27 E-value=0.00016 Score=65.65 Aligned_cols=34 Identities=24% Similarity=0.408 Sum_probs=29.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEE
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~v 190 (438)
..+..|+|.|+||+|||++|+.+++.+|.+++..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 4567899999999999999999999998765543
No 160
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.27 E-value=0.00014 Score=63.22 Aligned_cols=30 Identities=33% Similarity=0.401 Sum_probs=26.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEEE
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~v 190 (438)
..|+|.||||+|||++|+.+ +.+|.+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 35889999999999999999 8899886654
No 161
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.26 E-value=0.00056 Score=66.09 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh----CCceEEEe
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMS 191 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l----g~~~i~vs 191 (438)
++.+...++|.||||+|||+|++.+|... |.++++++
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45556789999999999999999999874 44555554
No 162
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.24 E-value=0.00016 Score=67.27 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=27.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~ 189 (438)
..|..|+|.||||+|||++|+.+++.++.+++.
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 346789999999999999999999999876554
No 163
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.24 E-value=0.00017 Score=64.64 Aligned_cols=39 Identities=23% Similarity=0.193 Sum_probs=31.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccc
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 194 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~ 194 (438)
+.++..++|.||||+|||+++++++...+...+.++..+
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~ 44 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 44 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccc
Confidence 455678999999999999999999998776666676543
No 164
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.23 E-value=0.0002 Score=65.08 Aligned_cols=31 Identities=29% Similarity=0.260 Sum_probs=27.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~ 189 (438)
+..|+|.||||+|||++|+.+++.+|..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 5679999999999999999999999877654
No 165
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.22 E-value=0.00019 Score=67.87 Aligned_cols=34 Identities=18% Similarity=0.003 Sum_probs=29.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEE
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~v 190 (438)
+.|..|+|.||||+|||++|+.+++.++++++.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 4678899999999999999999999998765543
No 166
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.20 E-value=0.00021 Score=63.62 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
+..|+|.||||+|||++++.+++.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999987
No 167
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.18 E-value=0.00019 Score=63.12 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=26.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~ 189 (438)
..|+|.|+||+|||++|+.+++.+|.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 358999999999999999999999987664
No 168
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.17 E-value=0.00031 Score=65.69 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=28.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEE
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~v 190 (438)
..+..|+|.|+||+|||++|+.+|+.+++.++..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 3456799999999999999999999999766543
No 169
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.16 E-value=0.0002 Score=66.23 Aligned_cols=32 Identities=28% Similarity=0.475 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceEEE
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~v 190 (438)
+..|+|.|+||+|||++|+.+|+.++.+++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 35689999999999999999999999876644
No 170
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.16 E-value=0.0021 Score=61.63 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=24.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
++.....++|+||||+|||+|+..++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45555789999999999999999998753
No 171
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.14 E-value=0.00031 Score=67.01 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=28.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEEec
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~ 192 (438)
.++|.||||+|||++|+.+|+.++.+++.++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 58899999999999999999999988776654
No 172
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.11 E-value=0.00025 Score=65.55 Aligned_cols=31 Identities=39% Similarity=0.542 Sum_probs=27.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCceE
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPI 188 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i 188 (438)
.|..|+|.||||+|||++++.+|+.++..++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 4567999999999999999999999997544
No 173
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.10 E-value=0.00032 Score=61.49 Aligned_cols=29 Identities=21% Similarity=0.041 Sum_probs=26.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~ 189 (438)
.|+|.|+||+|||++|+.+++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48899999999999999999999988764
No 174
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.10 E-value=0.00026 Score=64.94 Aligned_cols=30 Identities=37% Similarity=0.386 Sum_probs=26.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEE
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~v 190 (438)
.|+|.||||+|||++|+.++++++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 478999999999999999999998876544
No 175
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.09 E-value=0.00028 Score=64.61 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=26.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEE
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~v 190 (438)
.|+|.||||+|||++|+.+++.+|.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999999876644
No 176
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=97.06 E-value=0.00028 Score=55.74 Aligned_cols=49 Identities=24% Similarity=0.249 Sum_probs=41.8
Q ss_pred CHHHHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHH
Q 013704 309 TREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 360 (438)
Q Consensus 309 ~~e~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~ 360 (438)
+.++|.+||+.++++ .+++++.+++.++||+|+||. ++|..+...++++
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~---~l~~eA~~~a~~~ 54 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADIN---SICQESGMLAVRE 54 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHH---HHHHHHHHGGGTS
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHh
Confidence 678999999988875 467888999999999999999 8888877777665
No 177
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.06 E-value=0.0004 Score=64.53 Aligned_cols=33 Identities=30% Similarity=0.472 Sum_probs=27.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEEecccc
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 195 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l 195 (438)
.|+|.||||+||+++|+.||+..|++. ++.+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdl 34 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDI 34 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHH
Confidence 478899999999999999999998764 554443
No 178
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.04 E-value=0.00051 Score=60.71 Aligned_cols=35 Identities=23% Similarity=0.174 Sum_probs=28.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEecccc
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 195 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l 195 (438)
+..++|.||||+|||++++.++..+|..+ ++...+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~--i~~d~~ 42 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAF--LDGDFL 42 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEE--EEGGGG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEE--EeCccc
Confidence 46789999999999999999999988654 444444
No 179
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.04 E-value=0.0005 Score=62.62 Aligned_cols=36 Identities=19% Similarity=0.240 Sum_probs=29.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEecccc
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 195 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l 195 (438)
.+..++|.||+|+|||+++++++..+|.. .++...+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~--~i~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLE--FAEADAF 63 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCE--EEEGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCe--EEccccc
Confidence 45789999999999999999999999764 4454443
No 180
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.03 E-value=0.0033 Score=66.33 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFA 181 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~ 181 (438)
.++.++|+||+|+|||+||..+++
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Confidence 457899999999999999999975
No 181
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.03 E-value=0.004 Score=61.30 Aligned_cols=73 Identities=16% Similarity=0.311 Sum_probs=46.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccc--------------------cCCCCChHHHHHHHHH
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE--------------------SGNAGEPAKLIRQRYR 212 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~--------------------s~~~Ge~~~~ir~~f~ 212 (438)
...|..++|.||+|+|||+++..+|..+ +..+..+.+.... ....+++...+...+.
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 3467889999999999999999999874 4555555442211 0111233333233333
Q ss_pred HHHHHHHhCCceeEEecccc
Q 013704 213 EAADIIKKGKMCCLFINDLD 232 (438)
Q Consensus 213 ~A~~~~~~~~p~ILfIDEiD 232 (438)
.+. ...+.+|+||+.-
T Consensus 181 ~a~----~~~~dvvIiDtpg 196 (306)
T 1vma_A 181 HAL----ARNKDVVIIDTAG 196 (306)
T ss_dssp HHH----HTTCSEEEEEECC
T ss_pred HHH----hcCCCEEEEECCC
Confidence 332 6788999999774
No 182
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.02 E-value=0.00065 Score=60.47 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=31.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccc
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE 194 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~ 194 (438)
.+..+.|.|++|+|||++++.++..+ |.+++.++...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 45678899999999999999999997 99988877543
No 183
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.99 E-value=0.0081 Score=68.14 Aligned_cols=147 Identities=16% Similarity=0.131 Sum_probs=78.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---C----CceEEEecccccc---------------------CCCCChHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM---G----INPIMMSAGELES---------------------GNAGEPAKLIR 208 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l---g----~~~i~vs~~~l~s---------------------~~~Ge~~~~ir 208 (438)
..++.+.|+|++|+|||+||+.+++.. . -.++.++.+.... .........+.
T Consensus 145 ~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 224 (1249)
T 3sfz_A 145 GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAK 224 (1249)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHH
Confidence 346789999999999999999988752 2 1233444332100 00011112222
Q ss_pred HHHHHHHHHHHhCCceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCC
Q 013704 209 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 288 (438)
Q Consensus 209 ~~f~~A~~~~~~~~p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~ 288 (438)
..++... ..+.++.+|+||+++... .+ + .-.++..||+||...
T Consensus 225 ~~l~~~l--~~~~~~~LlvlDd~~~~~------------------~~----~-------------~~~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 225 DRLRVLM--LRKHPRSLLILDDVWDPW------------------VL----K-------------AFDNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHT--SSSSCSCEEEEESCCCHH------------------HH----T-------------TTCSSCEEEEEESST
T ss_pred HHHHHHH--hccCCCEEEEEecCCCHH------------------HH----H-------------hhcCCCEEEEEcCCH
Confidence 2222111 002458999999987320 11 1 113456799999876
Q ss_pred CCCCccccCCCcceEEEe--c-CCHHHHHHHHHhhhCCCCCC-HHHHHHHHccCCcchhH
Q 013704 289 STLYAPLIRDGRMEKFYW--A-PTREDRIGVCSGIFRTDNVP-KEDIVKLVDTFPGQSID 344 (438)
Q Consensus 289 ~~Ld~aLlR~GRfd~~i~--l-P~~e~R~~Il~~~l~~~~v~-~~~la~l~~~~sgadi~ 344 (438)
....... .-...+. . .+.++-.++|........-. .+...++++.+.|-++.
T Consensus 268 ~~~~~~~----~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLa 323 (1249)
T 3sfz_A 268 SVTDSVM----GPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLV 323 (1249)
T ss_dssp TTTTTCC----SCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHH
T ss_pred HHHHhhc----CCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHH
Confidence 5432211 1123344 2 57778888887655432222 23455666777666664
No 184
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.98 E-value=0.00038 Score=70.11 Aligned_cols=30 Identities=20% Similarity=0.162 Sum_probs=27.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~ 189 (438)
..++|+||||+|||++++++|+.++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 568999999999999999999999988754
No 185
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.98 E-value=0.002 Score=63.26 Aligned_cols=39 Identities=15% Similarity=-0.121 Sum_probs=30.8
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEec
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 192 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~ 192 (438)
.|..+..-++|.|+||+|||++|..+|... +.++++++.
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 356666789999999999999999998763 456666664
No 186
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.97 E-value=0.0023 Score=58.14 Aligned_cols=39 Identities=15% Similarity=0.160 Sum_probs=30.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEecccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 195 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l 195 (438)
.++..+.|.||+|+|||+++++++..+ |...+.++...+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 456789999999999999999999998 555446665444
No 187
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.97 E-value=0.00053 Score=61.93 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=29.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh-CCceEEEe
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMS 191 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l-g~~~i~vs 191 (438)
.+..|.|.|+||+|||++++.+++.+ |.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 45679999999999999999999998 57777654
No 188
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.96 E-value=0.00072 Score=60.24 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh---CCceEEEe
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 191 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs 191 (438)
.|.|.|+||+|||++++.+++.+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999998 88887664
No 189
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.95 E-value=0.00045 Score=63.53 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=26.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEE
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~v 190 (438)
.|+|.||||+|||++|+.+++.+|.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 478999999999999999999999876654
No 190
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.95 E-value=0.0028 Score=56.66 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=30.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC---CceEEEecccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGEL 195 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg---~~~i~vs~~~l 195 (438)
..+..++|.|+||+|||++++.++..++ .++..++...+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 3467889999999999999999999864 44555655443
No 191
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.93 E-value=0.0018 Score=60.85 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEEecc
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 193 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~ 193 (438)
.++++||+|+|||.++.+++...+..++.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 489999999999999999999987777766554
No 192
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.93 E-value=0.0007 Score=62.27 Aligned_cols=30 Identities=20% Similarity=0.353 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceE
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPI 188 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i 188 (438)
+..|.|.||+|+|||++++.+++.+|++++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 457899999999999999999999997654
No 193
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.93 E-value=0.0055 Score=63.43 Aligned_cols=71 Identities=14% Similarity=0.167 Sum_probs=49.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEeccccc-------------------c-CCCCChHHHHHHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE-------------------S-GNAGEPAKLIRQRYREA 214 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l~-------------------s-~~~Ge~~~~ir~~f~~A 214 (438)
+|..+++.||||+|||+++..+|..+ |..+..+++.... . .....+...++..++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999874 6677666654221 1 11223444555555555
Q ss_pred HHHHHhCCceeEEecccc
Q 013704 215 ADIIKKGKMCCLFINDLD 232 (438)
Q Consensus 215 ~~~~~~~~p~ILfIDEiD 232 (438)
. .....++|||...
T Consensus 179 ~----~~~~DvVIIDTaG 192 (443)
T 3dm5_A 179 K----SKGVDIIIVDTAG 192 (443)
T ss_dssp H----HTTCSEEEEECCC
T ss_pred H----hCCCCEEEEECCC
Confidence 4 6678999999764
No 194
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.92 E-value=0.0016 Score=61.69 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=27.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEec
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 192 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~ 192 (438)
...|++.|+||+|||+++-.+|..+ |..++.+..
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 4679999999999999999988773 777665554
No 195
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.91 E-value=0.00074 Score=63.48 Aligned_cols=31 Identities=26% Similarity=0.430 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCceE
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPI 188 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i 188 (438)
.|..+.|.||||+|||+++++|++.+|...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 3678999999999999999999999987654
No 196
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.86 E-value=0.00062 Score=61.28 Aligned_cols=32 Identities=38% Similarity=0.513 Sum_probs=27.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~ 189 (438)
..|..|.|.|++|+|||++++.+++. |++++.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 34678999999999999999999998 877654
No 197
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.86 E-value=0.0034 Score=64.91 Aligned_cols=38 Identities=16% Similarity=-0.097 Sum_probs=30.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEec
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 192 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~ 192 (438)
|..+..-++|.|+||+|||++|..+|... |.++++++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 56666789999999999999999888774 667777765
No 198
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.85 E-value=0.00048 Score=61.24 Aligned_cols=32 Identities=28% Similarity=0.162 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC---CceEEEec
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMG---INPIMMSA 192 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg---~~~i~vs~ 192 (438)
.|+|.||||+|||++++.+++.++ .++..++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~ 37 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY 37 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEEC
Confidence 588999999999999999999876 33444543
No 199
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.84 E-value=0.00077 Score=60.54 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~ 189 (438)
.|.|.|+||+|||++++.+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999986553
No 200
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.84 E-value=0.0025 Score=58.39 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=31.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC----CceEEEecccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGEL 195 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg----~~~i~vs~~~l 195 (438)
..+..++|.|+||+|||++++.+++.++ .+++.++...+
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 4467899999999999999999999764 56777765444
No 201
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.83 E-value=0.00041 Score=63.05 Aligned_cols=31 Identities=26% Similarity=0.177 Sum_probs=26.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCce
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINP 187 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~ 187 (438)
+.+..|+|.|+||+|||++++.+++.++...
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 3467899999999999999999999876543
No 202
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.83 E-value=0.00095 Score=59.75 Aligned_cols=31 Identities=29% Similarity=0.373 Sum_probs=26.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh---CCceEEEe
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 191 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs 191 (438)
-|.|.|++|+|||++++.+++.+ |.+++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 47899999999999999999998 99887654
No 203
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.82 E-value=0.00081 Score=60.79 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=25.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCc
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGIN 186 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~ 186 (438)
+..|+|.|+||+|||++|+.+++.++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 5678999999999999999999998774
No 204
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.80 E-value=0.00081 Score=62.50 Aligned_cols=29 Identities=34% Similarity=0.415 Sum_probs=25.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~ 189 (438)
.|+|.||||+|||++|+.+++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 48899999999999999999999875543
No 205
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.80 E-value=0.00078 Score=67.00 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=30.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEecc
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 193 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~ 193 (438)
|..++|.||+|+|||++++.+|+.++..++.++.-
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 45799999999999999999999999887777543
No 206
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.80 E-value=0.0052 Score=64.11 Aligned_cols=38 Identities=11% Similarity=-0.035 Sum_probs=30.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh----CCceEEEec
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 192 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l----g~~~i~vs~ 192 (438)
|..+...++|.|+||+|||++|..+|... |.++++++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 55566789999999999999999998874 556777765
No 207
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.80 E-value=0.00092 Score=63.41 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=27.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~ 189 (438)
.|..+.|.||||+|||++++.|++.++.+++.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 46789999999999999999999999976543
No 208
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.80 E-value=0.0011 Score=62.58 Aligned_cols=41 Identities=27% Similarity=0.579 Sum_probs=33.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCce--------EEEecccccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINP--------IMMSAGELES 197 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~--------i~vs~~~l~s 197 (438)
..|..|.|.||||+|||++|+.+++.+|.++ +.++.+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 4567899999999999999999999999763 3567666653
No 209
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.80 E-value=0.0005 Score=62.47 Aligned_cols=29 Identities=17% Similarity=0.160 Sum_probs=25.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI 185 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~ 185 (438)
+.|..|+|.|+||+|||++++.+++.++.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34678999999999999999999998653
No 210
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.79 E-value=0.00068 Score=61.46 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEEe
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs 191 (438)
.|.|.||+|+|||++++.+++ +|++++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 588999999999999999999 887765543
No 211
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.74 E-value=0.0012 Score=59.53 Aligned_cols=30 Identities=30% Similarity=0.305 Sum_probs=27.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEE
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~v 190 (438)
.|.|.|++|+|||++++.+++.+|++++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 689999999999999999999999887653
No 212
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.74 E-value=0.00096 Score=60.65 Aligned_cols=29 Identities=31% Similarity=0.566 Sum_probs=25.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~ 189 (438)
..+.|.||+|+|||++++.+++ +|.+++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 4688999999999999999998 8877653
No 213
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.73 E-value=0.0017 Score=65.27 Aligned_cols=69 Identities=12% Similarity=0.153 Sum_probs=41.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC----CceEEEecc-cccc---------CCCCChHHHHHHHHHHHHHHHHhCCcee
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAG-ELES---------GNAGEPAKLIRQRYREAADIIKKGKMCC 225 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg----~~~i~vs~~-~l~s---------~~~Ge~~~~ir~~f~~A~~~~~~~~p~I 225 (438)
..+++.||+|+|||++.++++..+. ..++.+.-. ++.. ...+.........+..|. ...|.+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL----~~~Pdv 199 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSAL----REDPDI 199 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHT----TSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHh----hhCcCE
Confidence 4688999999999999999998752 333332211 1110 011111112233444444 889999
Q ss_pred EEecccc
Q 013704 226 LFINDLD 232 (438)
Q Consensus 226 LfIDEiD 232 (438)
|++||.-
T Consensus 200 illDEp~ 206 (356)
T 3jvv_A 200 ILVGEMR 206 (356)
T ss_dssp EEESCCC
T ss_pred EecCCCC
Confidence 9999983
No 214
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.72 E-value=0.012 Score=62.76 Aligned_cols=72 Identities=10% Similarity=0.141 Sum_probs=49.0
Q ss_pred eeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC--CCCccccCCCcc
Q 013704 224 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS--TLYAPLIRDGRM 301 (438)
Q Consensus 224 ~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~--~Ld~aLlR~GRf 301 (438)
.+|+|||+..++.... ..+...|..|.. .....+|-+|++|.+|+ .|+..++. -|
T Consensus 345 ivvVIDE~~~L~~~~~---------~~~~~~L~~Iar------------~GRa~GIhLIlaTQRPs~d~I~~~Ira--n~ 401 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG---------KKVEELIARIAQ------------KARAAGIHLILATQRPSVDVITGLIKA--NI 401 (574)
T ss_dssp EEEEESCCTTHHHHTC---------HHHHHHHHHHHH------------HCTTTTEEEEEEESCCCTTTSCHHHHH--TC
T ss_pred EEEEEeCHHHHhhhhh---------HHHHHHHHHHHH------------HHhhCCeEEEEEecCcccccccHHHHh--hh
Confidence 5899999998865321 123334444433 24568899999999998 78887776 55
Q ss_pred eEEEe--cCCHHHHHHHHH
Q 013704 302 EKFYW--APTREDRIGVCS 318 (438)
Q Consensus 302 d~~i~--lP~~e~R~~Il~ 318 (438)
...+- +.+..+...|+.
T Consensus 402 ~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 402 PTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp CEEEEECCSCHHHHHHHHS
T ss_pred ccEEEEEcCCHHHHHHhcC
Confidence 55555 578887777773
No 215
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.68 E-value=0.0019 Score=64.51 Aligned_cols=38 Identities=11% Similarity=-0.062 Sum_probs=30.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCceEEEec
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 192 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs~ 192 (438)
|..+..-++|.|+||+|||+++..+|.. .+.++.+++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 5566678999999999999999999887 3667766654
No 216
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.66 E-value=0.0014 Score=60.10 Aligned_cols=32 Identities=34% Similarity=0.481 Sum_probs=27.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEE
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~v 190 (438)
.|..|.|.|++|+|||++++.+++ +|.+++..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 467899999999999999999998 88765543
No 217
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.66 E-value=0.00088 Score=61.04 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=28.4
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHh-CCceE
Q 013704 154 PNVKVPLILGIWGGKGQGKSFQCELVFAKM-GINPI 188 (438)
Q Consensus 154 ~~~~~p~glLL~GPPGtGKT~lA~aIA~~l-g~~~i 188 (438)
+.++.+..+.|.||||+|||++++.+++.+ ++.++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i 51 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVI 51 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence 345667789999999999999999999977 55443
No 218
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.65 E-value=0.0021 Score=61.70 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.+...++|.||.|+|||++.++++...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 344678899999999999999999874
No 219
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.60 E-value=0.0019 Score=59.33 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCC
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGI 185 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~ 185 (438)
++..+.|.||+|+|||++++.++..+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 4567899999999999999999998753
No 220
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.59 E-value=0.0027 Score=66.98 Aligned_cols=37 Identities=14% Similarity=0.335 Sum_probs=29.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC---CceEEEecc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAG 193 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg---~~~i~vs~~ 193 (438)
..|..|+|.|.||+|||++|+.+++.++ .....++.+
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D 72 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVG 72 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEeccc
Confidence 3467899999999999999999999984 444445544
No 221
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.59 E-value=0.0034 Score=55.82 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=18.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCEL 178 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~a 178 (438)
..+..+.|.||+|+|||+++++
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 3456789999999999999994
No 222
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.57 E-value=0.0015 Score=59.87 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceEEE
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~v 190 (438)
|..|.|.|++|+|||++++.+++.+|++++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 45789999999999999999999999876543
No 223
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.57 E-value=0.0043 Score=56.50 Aligned_cols=38 Identities=24% Similarity=0.295 Sum_probs=30.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEecc
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 193 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~ 193 (438)
...+..+.|.||+|+|||++++.++..+ +.+++..+..
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 3456789999999999999999999975 6666655444
No 224
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.55 E-value=0.0014 Score=60.11 Aligned_cols=31 Identities=32% Similarity=0.646 Sum_probs=27.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEEE
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~v 190 (438)
..|.|.|++|||||++++.+++.+|++++..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 5688999999999999999999989876653
No 225
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.52 E-value=0.0021 Score=60.00 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=28.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~ 189 (438)
...+..|.|.|++|+|||++++.+++.+|++++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 3456789999999999999999999999987653
No 226
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.51 E-value=0.0048 Score=61.66 Aligned_cols=36 Identities=22% Similarity=0.215 Sum_probs=30.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEec
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~ 192 (438)
..++.|+|.||+|+|||+|+..+|+.++.++|..+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds 73 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDK 73 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence 345679999999999999999999999887766544
No 227
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.51 E-value=0.0015 Score=63.23 Aligned_cols=33 Identities=27% Similarity=0.281 Sum_probs=27.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEE
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~v 190 (438)
..|..|.|.|+||+|||++|+.++ .+|++++..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 346789999999999999999999 688765543
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.50 E-value=0.0092 Score=61.55 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=29.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEecc
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 193 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~ 193 (438)
+|..+++.||+|+|||+++..+|..+ |..+..+++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 47889999999999999999999764 6666666543
No 229
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=96.49 E-value=0.00052 Score=54.22 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=31.1
Q ss_pred HHHHHHHHhhhCC----CCCCHHHHHHHHccCCcchhHHHHHHHHhhhhHHHHHH
Q 013704 311 EDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 361 (438)
Q Consensus 311 e~R~~Il~~~l~~----~~v~~~~la~l~~~~sgadi~~~~al~~~~~~~air~~ 361 (438)
++|.+||+.++++ .+++++.+++.++||+|+||. ++|..+...++++.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~---~l~~eAa~~ai~~~ 52 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIA---AIMQEAGLRAVRKN 52 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHH---HHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHhc
Confidence 4688999877765 467888999999999999999 89999988888864
No 230
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.49 E-value=0.0024 Score=65.34 Aligned_cols=38 Identities=21% Similarity=0.170 Sum_probs=30.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEecccc
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 195 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l 195 (438)
...|..|+|.|+||+|||++|+.+++.++.. .++...+
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~--~i~~D~~ 292 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYV--HVNRDTL 292 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCE--ECCGGGS
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcE--EEccchH
Confidence 3457889999999999999999999998764 4555544
No 231
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.45 E-value=0.0023 Score=60.69 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceE
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPI 188 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i 188 (438)
...|.|.||+|+|||++++.+|+.+|+.++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 457899999999999999999999998755
No 232
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.43 E-value=0.0017 Score=62.60 Aligned_cols=30 Identities=33% Similarity=0.303 Sum_probs=25.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh-CCceE
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM-GINPI 188 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l-g~~~i 188 (438)
|..|+|.|+||+|||++|+.+++.. +..++
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 4678999999999999999999974 55443
No 233
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.42 E-value=0.0021 Score=61.42 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=27.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEEE
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~v 190 (438)
..|.|.||+|+|||++++.+|+.+|.+++..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 4699999999999999999999999887654
No 234
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.37 E-value=0.0032 Score=63.55 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.+...++|.||+|+|||++.++++...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 444678999999999999999999874
No 235
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.33 E-value=0.0021 Score=58.60 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=24.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
..+..++|.||||+|||++++.+++.++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4566799999999999999999999875
No 236
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.32 E-value=0.0032 Score=62.27 Aligned_cols=36 Identities=14% Similarity=0.178 Sum_probs=30.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEec
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~ 192 (438)
..|..++|.||+|+|||+||..+|+.++..++..+.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 346788999999999999999999999877766554
No 237
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.30 E-value=0.0038 Score=57.69 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
.++.+.|.||+|+|||+|++++++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456788999999999999999998864
No 238
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.30 E-value=0.0026 Score=57.34 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
..+..+.|.||+|+|||++++.++..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 345679999999999999999999876
No 239
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.26 E-value=0.0047 Score=65.89 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH---hCCceEEEec
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 192 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs~ 192 (438)
...++|.||||||||+++.+++.. .+..++.+..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 357899999999999999999886 4566655543
No 240
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.24 E-value=0.0095 Score=61.40 Aligned_cols=81 Identities=12% Similarity=0.048 Sum_probs=53.5
Q ss_pred ceeEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEe---------cC---CCCC
Q 013704 223 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVT---------GN---DFST 290 (438)
Q Consensus 223 p~ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~T---------TN---~~~~ 290 (438)
|.|+||||+|.+.. ...+.|+..++ +...+++|++| ++ .+..
T Consensus 296 ~~VliIDEa~~l~~-------------~a~~aLlk~lE-------------e~~~~~~il~tn~~~~~i~~~~~~~~~~~ 349 (456)
T 2c9o_A 296 PGVLFVDEVHMLDI-------------ECFTYLHRALE-------------SSIAPIVIFASNRGNCVIRGTEDITSPHG 349 (456)
T ss_dssp ECEEEEESGGGCBH-------------HHHHHHHHHTT-------------STTCCEEEEEECCSEEECBTTSSCEEETT
T ss_pred ceEEEEechhhcCH-------------HHHHHHHHHhh-------------ccCCCEEEEecCCcccccccccccccccc
Confidence 46999999998832 34466666555 33444544444 32 2678
Q ss_pred CCccccCCCcceEEEe-cCCHHHHHHHHHhhhCC--CCCCHHHH
Q 013704 291 LYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRT--DNVPKEDI 331 (438)
Q Consensus 291 Ld~aLlR~GRfd~~i~-lP~~e~R~~Il~~~l~~--~~v~~~~l 331 (438)
|++.+++ ||..+.. .|+.++..++++..... ..++.+.+
T Consensus 350 l~~~i~s--R~~~~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~ 391 (456)
T 2c9o_A 350 IPLDLLD--RVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEAL 391 (456)
T ss_dssp CCHHHHT--TEEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHH
T ss_pred CChhHHh--hcceeeCCCCCHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 8999999 9977533 47999999999876643 33444443
No 241
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.19 E-value=0.024 Score=59.50 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=28.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEec
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 192 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~ 192 (438)
..|..|+|.|+||+|||+++..+|..+ |..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 457789999999999999999999765 667766665
No 242
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.16 E-value=0.0056 Score=55.92 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=24.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
+.+..+.|.||+|+|||+|+++|+..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567889999999999999999999875
No 243
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.12 E-value=0.0043 Score=57.01 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=27.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~ 189 (438)
..|.|.||+|||||++++.+|+.+|++|+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 478999999999999999999999999874
No 244
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.10 E-value=0.0037 Score=56.84 Aligned_cols=28 Identities=29% Similarity=0.609 Sum_probs=24.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
+++..+.|.||+|+|||++++.++..++
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4567789999999999999999999987
No 245
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.08 E-value=0.0044 Score=55.40 Aligned_cols=32 Identities=25% Similarity=0.348 Sum_probs=24.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEEEec
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~ 192 (438)
..++|.||+|+|||++++.++...+.. +.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~-~~i~~ 34 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNS-AYIEG 34 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSE-EEEEH
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCe-EEEcc
Confidence 357899999999999999999865432 34443
No 246
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.07 E-value=0.0042 Score=55.56 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
...+.|.||+|+|||+|+++++....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45789999999999999999999764
No 247
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.06 E-value=0.0037 Score=62.52 Aligned_cols=32 Identities=22% Similarity=0.119 Sum_probs=27.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEEEe
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs 191 (438)
..|+|.||+|+|||++|+.||+.++..++.++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 57899999999999999999999986655544
No 248
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.05 E-value=0.0082 Score=59.49 Aligned_cols=39 Identities=38% Similarity=0.537 Sum_probs=32.0
Q ss_pred HHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 146 ITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 146 i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
+...++.....+.|..+.|.||+|||||+++++++..++
T Consensus 79 ~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 79 ATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344555555567788999999999999999999999875
No 249
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.05 E-value=0.0058 Score=55.81 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCC
Q 013704 162 LGIWGGKGQGKSFQCELVFAKMGI 185 (438)
Q Consensus 162 lLL~GPPGtGKT~lA~aIA~~lg~ 185 (438)
|+|.||+|+|||+|++.+.++..-
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEECCCCCCHHHHHHHHHHhCCC
Confidence 889999999999999999988543
No 250
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.04 E-value=0.0043 Score=58.72 Aligned_cols=30 Identities=33% Similarity=0.509 Sum_probs=26.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~ 189 (438)
.-+.|.||||+|||++|+.|++.++++.+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is 38 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIS 38 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEC
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeee
Confidence 347889999999999999999999987653
No 251
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.03 E-value=0.0098 Score=54.47 Aligned_cols=33 Identities=15% Similarity=-0.035 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEe
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 191 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs 191 (438)
....+++||+|+|||+.+..++... |..++.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3678899999999999888887774 66665553
No 252
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.02 E-value=0.013 Score=63.22 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=33.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEecccc
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 195 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~~l 195 (438)
.+..|+|.|+||+|||++|+++++.+ |.+++.++...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 56789999999999999999999998 999988875444
No 253
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.01 E-value=0.016 Score=61.03 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFA 181 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~ 181 (438)
.+..+.|+|++|+|||+||+.+++
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999997
No 254
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.99 E-value=0.018 Score=58.75 Aligned_cols=78 Identities=10% Similarity=0.093 Sum_probs=47.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh-----CCceEEEeccc---------------cccCCCCC-hHHHHHH---HHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGE---------------LESGNAGE-PAKLIRQ---RYRE 213 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l-----g~~~i~vs~~~---------------l~s~~~Ge-~~~~ir~---~f~~ 213 (438)
+...++|.||+|||||+|+..|++.. ++.++++-.++ +......+ +...++. ....
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r~~~a~~alt~ 252 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEK 252 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 34579999999999999999999864 44444442221 11112222 2223321 2233
Q ss_pred HHHHHHhCCceeEEeccccccc
Q 013704 214 AADIIKKGKMCCLFINDLDAGA 235 (438)
Q Consensus 214 A~~~~~~~~p~ILfIDEiD~l~ 235 (438)
|.......+..+||+|++-+.+
T Consensus 253 AEyfrd~G~dVLil~DslTR~A 274 (422)
T 3ice_A 253 AKRLVEHKKDVIILLDSITRLA 274 (422)
T ss_dssp HHHHHHTSCEEEEEEECHHHHH
T ss_pred HHHHHhcCCCEEEEEeCchHHH
Confidence 4444447888999999998765
No 255
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.96 E-value=0.0038 Score=61.85 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEec
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~ 192 (438)
+..|+|.||+|+|||+|+..+|+.++..++..+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 4568899999999999999999998876655443
No 256
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.96 E-value=0.005 Score=55.39 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEec
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 192 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~ 192 (438)
....+.|.||+|+|||++++.++.... .+.+..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~--~~~~~~ 38 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA--EIKISI 38 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS--SEEECC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC--CeEEec
Confidence 346788999999999999999999853 344443
No 257
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.95 E-value=0.043 Score=56.44 Aligned_cols=38 Identities=18% Similarity=0.197 Sum_probs=31.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh----CCceEEEeccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGE 194 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l----g~~~i~vs~~~ 194 (438)
.+|..|++.|++|+|||+++..+|..+ |..+..+++..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 457899999999999999999998774 77787777653
No 258
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.90 E-value=0.03 Score=51.62 Aligned_cols=34 Identities=21% Similarity=-0.017 Sum_probs=27.4
Q ss_pred CcEEEEEcCCCCcHH-HHHHHHHHH--hCCceEEEec
Q 013704 159 PLILGIWGGKGQGKS-FQCELVFAK--MGINPIMMSA 192 (438)
Q Consensus 159 p~glLL~GPPGtGKT-~lA~aIA~~--lg~~~i~vs~ 192 (438)
....++|||.|+||| .|.+++.+. .+..++.+.+
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 467889999999999 888988876 4667777763
No 259
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.90 E-value=0.0076 Score=58.93 Aligned_cols=38 Identities=26% Similarity=0.433 Sum_probs=29.8
Q ss_pred HHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 147 TKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 147 ~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
.+.++.......+..+.|.||+|+|||++++.|+..++
T Consensus 68 ~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 68 LEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp HHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred HHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34555444445678899999999999999999999876
No 260
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.85 E-value=0.051 Score=53.85 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.+|..+.|.||+|+|||++++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999999874
No 261
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.80 E-value=0.051 Score=57.01 Aligned_cols=38 Identities=11% Similarity=0.092 Sum_probs=26.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHH--HHHh--CCceEEEec
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELV--FAKM--GINPIMMSA 192 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aI--A~~l--g~~~i~vs~ 192 (438)
++.+...++|.||+|+|||+|++.+ +... +...++++.
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g 76 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF 76 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 4455678999999999999999994 4432 334455544
No 262
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.79 E-value=0.062 Score=56.51 Aligned_cols=73 Identities=5% Similarity=0.108 Sum_probs=46.6
Q ss_pred ce-eEEeccccccccCCCCCccccchhHHHHHHHHHhhcCCCccccCCccccCCCCCceEEEecCCCC--CCCccccCCC
Q 013704 223 MC-CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS--TLYAPLIRDG 299 (438)
Q Consensus 223 p~-ILfIDEiD~l~~~r~~~~~~~~~~~~v~~~Ll~Lld~~~~v~ldg~~~~~~~~~v~VI~TTN~~~--~Ld~aLlR~G 299 (438)
|. +|+|||+..++... ...+...+..|.. .....++.+|++|.+++ .|+..++.
T Consensus 297 P~ivlvIDE~~~ll~~~---------~~~~~~~l~~Lar------------~gRa~GI~LIlaTQrp~~dvl~~~i~~-- 353 (512)
T 2ius_A 297 PYIVVLVDEFADLMMTV---------GKKVEELIARLAQ------------KARAAGIHLVLATQRPSVDVITGLIKA-- 353 (512)
T ss_dssp CEEEEEEETHHHHHHHH---------HHHHHHHHHHHHH------------HCGGGTEEEEEEESCCCTTTSCHHHHH--
T ss_pred CcEEEEEeCHHHHHhhh---------hHHHHHHHHHHHH------------HhhhCCcEEEEEecCCccccccHHHHh--
Confidence 54 89999998775421 1123333433332 12245889999999987 57777766
Q ss_pred cceEEEe--cCCHHHHHHHHH
Q 013704 300 RMEKFYW--APTREDRIGVCS 318 (438)
Q Consensus 300 Rfd~~i~--lP~~e~R~~Il~ 318 (438)
-|...+- +.+..+...|+.
T Consensus 354 n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 354 NIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp HCCEEEEECCSSHHHHHHHHS
T ss_pred hcCCeEEEEcCCHHHHHHhcC
Confidence 5655444 588888888774
No 263
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.74 E-value=0.013 Score=57.05 Aligned_cols=30 Identities=30% Similarity=0.503 Sum_probs=26.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
..+.|..|.|.||+|+|||++++.|+..++
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345678899999999999999999999875
No 264
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.69 E-value=0.026 Score=60.48 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
..+++.||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 579999999999999888776654
No 265
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.68 E-value=0.0067 Score=62.05 Aligned_cols=33 Identities=24% Similarity=0.150 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEe
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs 191 (438)
+..|+|.||+|+|||+||..+|+.++..++.++
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 457889999999999999999999987765543
No 266
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.67 E-value=0.033 Score=54.21 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=27.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEec
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 192 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~ 192 (438)
.+..+.+.|++|+|||+++..+|..+ +..+..+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 56788899999999999999999874 455555443
No 267
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.67 E-value=0.0096 Score=55.74 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=27.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhC--CceEE
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG--INPIM 189 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg--~~~i~ 189 (438)
...+..|.|.||||+|||++++.+++.++ ..++.
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 34567788999999999999999999986 45443
No 268
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.65 E-value=0.0087 Score=56.14 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceEE
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 189 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~ 189 (438)
...|.|.|++|||||++++.+|+.+|++++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 4678999999999999999999999998754
No 269
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.64 E-value=0.01 Score=58.77 Aligned_cols=70 Identities=11% Similarity=0.064 Sum_probs=43.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC--ceEEEeccc-cccC-------CCCChHHHHHHHHHHHHHHHHhCCceeEEec
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGE-LESG-------NAGEPAKLIRQRYREAADIIKKGKMCCLFIN 229 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~--~~i~vs~~~-l~s~-------~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfID 229 (438)
..++|.||+|+|||+++++++..... ..+.+.... +.-. ++.......+..+..|. ...|.+|++|
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL----~~~p~ilild 247 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCL----RMRPDRIILG 247 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHT----TSCCSEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHh----hhCCCEEEEc
Confidence 46999999999999999999988532 234444321 1100 11001122334555554 7899999999
Q ss_pred cccc
Q 013704 230 DLDA 233 (438)
Q Consensus 230 EiD~ 233 (438)
|.-.
T Consensus 248 E~~~ 251 (330)
T 2pt7_A 248 ELRS 251 (330)
T ss_dssp CCCS
T ss_pred CCCh
Confidence 9753
No 270
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.62 E-value=0.0064 Score=54.55 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
|..+.|.||+|+|||++++.++....
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35688999999999999999998864
No 271
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.60 E-value=0.012 Score=55.44 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
.+..|+|.|.||+|||+|..++...
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCC
Confidence 4578999999999999999999765
No 272
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.56 E-value=0.032 Score=59.52 Aligned_cols=39 Identities=8% Similarity=0.055 Sum_probs=32.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC----CceEEEecccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGEL 195 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg----~~~i~vs~~~l 195 (438)
..+..|+|.|+||+|||++|+++++.++ .+++.++...+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 4567899999999999999999999976 77777776543
No 273
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.54 E-value=0.021 Score=60.55 Aligned_cols=60 Identities=15% Similarity=0.074 Sum_probs=38.8
Q ss_pred ChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC---CceEEEecccc
Q 013704 135 APAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGEL 195 (438)
Q Consensus 135 ~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg---~~~i~vs~~~l 195 (438)
|+.|+-.-+..+.+...... .+.+..|+|.|+||+|||++|+.+++.++ .++..++...+
T Consensus 349 p~~~~r~eV~~~lr~~~~~~-~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 349 PEWFTRPEVAEILAETYVPK-HKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp CTTTSCHHHHHHHHHHSCCG-GGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred CccccchhHHHHHHHhhccc-cccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 44444233344555443221 24467899999999999999999999864 45666665443
No 274
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.53 E-value=0.02 Score=51.41 Aligned_cols=24 Identities=17% Similarity=0.031 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
..+++++|+|+|||+++..++.+.
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 458999999999999988877763
No 275
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.48 E-value=0.01 Score=61.73 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
..++|+||+|+|||+|+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 458999999999999999888764
No 276
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.45 E-value=0.01 Score=55.65 Aligned_cols=31 Identities=35% Similarity=0.714 Sum_probs=26.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~ 186 (438)
+..+..+.|.||.|+|||++++.++..+|..
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 4556778999999999999999999988754
No 277
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.44 E-value=0.059 Score=53.12 Aligned_cols=37 Identities=19% Similarity=0.186 Sum_probs=29.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEec
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 192 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~ 192 (438)
..+|..+++.||+|+|||+++..+|..+ +..++.+.+
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3567889999999999999999999874 556655544
No 278
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.44 E-value=0.059 Score=56.49 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEec
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 192 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~ 192 (438)
++.+...++|.||||+|||+|++.++... |-..+++..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ 317 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAY 317 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 45556789999999999999999999764 444555543
No 279
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.43 E-value=0.005 Score=55.79 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
.|.|.||+|+|||++++.+++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999975
No 280
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.41 E-value=0.0063 Score=59.19 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC---CceEEEeccccc
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELE 196 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg---~~~i~vs~~~l~ 196 (438)
.+..|.|.||+|+|||++|+.+++.++ ..+..++...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 356799999999999999999999766 445566665544
No 281
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.40 E-value=0.041 Score=53.71 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEecc
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 193 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~ 193 (438)
+..+++.|++|+|||+++..+|..+ |..+..+++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 7788899999999999999999775 6666666553
No 282
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.39 E-value=0.027 Score=60.62 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH---hCCceEEEecc
Q 013704 161 ILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAG 193 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs~~ 193 (438)
-.|++||||||||+++-.+..+ .+..++.+..+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 5789999999999865444444 35566656554
No 283
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.38 E-value=0.043 Score=51.26 Aligned_cols=32 Identities=22% Similarity=0.101 Sum_probs=24.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH---hCCceEEEe
Q 013704 160 LILGIWGGKGQGKSFQCELVFAK---MGINPIMMS 191 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs 191 (438)
...+++||.|+|||+.+-.++.. .|..++.+.
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 56668999999999988777765 466766665
No 284
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.36 E-value=0.022 Score=58.89 Aligned_cols=29 Identities=14% Similarity=0.320 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI 185 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~ 185 (438)
..|..|+|.|.||+|||++++.+++.++.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 45678999999999999999999998753
No 285
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.32 E-value=0.012 Score=54.85 Aligned_cols=26 Identities=31% Similarity=0.270 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
|..|.|.|++|+|||++++.+++.++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 67799999999999999999999984
No 286
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.28 E-value=0.013 Score=61.57 Aligned_cols=53 Identities=11% Similarity=-0.087 Sum_probs=37.8
Q ss_pred CCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC
Q 013704 132 LYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI 185 (438)
Q Consensus 132 ~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~ 185 (438)
..+|+.|+-.-+..+.+.+.... .+.+..|.|.|++|||||++++++|+.++.
T Consensus 369 ~~~P~~f~rpeV~~vLr~~~~~~-~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 369 GEIPEWFSYPEVVKILRESNPPR-PKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCCCTTTSCHHHHHHHHHHSCCG-GGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred CCCCccccChhhHHHHHHhcccc-cccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 34455666555555555544221 244578999999999999999999999985
No 287
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.22 E-value=0.0099 Score=54.08 Aligned_cols=26 Identities=27% Similarity=0.347 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
+..+.|.||+|+|||+|++.++....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45688999999999999999998764
No 288
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.14 E-value=0.071 Score=52.98 Aligned_cols=35 Identities=26% Similarity=0.261 Sum_probs=27.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEe
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 191 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs 191 (438)
..+..|.|.|+||+|||+++..++..+ |..+..++
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 345789999999999999999999875 55544443
No 289
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.10 E-value=0.0087 Score=55.57 Aligned_cols=31 Identities=26% Similarity=0.094 Sum_probs=25.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCceEEE
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~v 190 (438)
..+++|.||+|+|||++|..+++... .++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsd 64 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIAD 64 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEES
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEec
Confidence 47899999999999999999998865 44433
No 290
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.09 E-value=0.014 Score=53.23 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=24.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
+.....+.|.||+|+|||+|+++|+....
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 44556789999999999999999999874
No 291
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.08 E-value=0.17 Score=53.01 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=24.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
+..+..++|.||.|+|||+++++|+..+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 5567889999999999999999999874
No 292
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.03 E-value=0.1 Score=48.87 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
.+..|+|.|+||+|||+|...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999865
No 293
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.00 E-value=0.079 Score=59.51 Aligned_cols=26 Identities=23% Similarity=0.051 Sum_probs=21.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
.....++|.||.|+|||++.+.++.-
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHH
Confidence 34467999999999999999998743
No 294
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.99 E-value=0.091 Score=59.14 Aligned_cols=23 Identities=22% Similarity=-0.002 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFA 181 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~ 181 (438)
...++|.||.|+|||++.+.++-
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999954
No 295
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.99 E-value=0.046 Score=50.92 Aligned_cols=33 Identities=24% Similarity=0.375 Sum_probs=27.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEE
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 190 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~v 190 (438)
.+.-|.|.|++|+|||++++.+++.++.+...+
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~ 36 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPNCKLL 36 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSSEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcccceEE
Confidence 356788999999999999999999998754333
No 296
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.99 E-value=0.013 Score=54.15 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=23.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
+.+...+.|.||+|+|||+|+++|+...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3445678999999999999999999976
No 297
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.98 E-value=0.014 Score=53.04 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=28.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCceEEEeccc
Q 013704 162 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 194 (438)
Q Consensus 162 lLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~ 194 (438)
+|++|++|+|||++|+.++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 88888887654
No 298
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.96 E-value=0.0062 Score=57.76 Aligned_cols=29 Identities=17% Similarity=0.020 Sum_probs=24.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
.+.+..|.|.|++|+|||++++.+++.+.
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34567899999999999999999999983
No 299
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.94 E-value=0.036 Score=52.08 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh-------CCceEEEe
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM-------GINPIMMS 191 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l-------g~~~i~vs 191 (438)
...-|.|.||+|+|||++++.+++.+ |.+++...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 45678899999999999999999986 66665444
No 300
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.94 E-value=0.037 Score=54.17 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=24.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
...+..+.|.||.|+|||++++.+|..+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4567789999999999999999999874
No 301
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.92 E-value=0.12 Score=57.18 Aligned_cols=25 Identities=24% Similarity=-0.003 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
....++|.||.|+|||++.+.|+.-
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 3467899999999999999999875
No 302
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.83 E-value=0.02 Score=56.34 Aligned_cols=29 Identities=31% Similarity=0.494 Sum_probs=25.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
.+.+..+.|.||+|+|||+|++.|+..+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 56678899999999999999999999863
No 303
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.67 E-value=0.021 Score=59.99 Aligned_cols=70 Identities=10% Similarity=0.121 Sum_probs=42.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCC--ceEEEeccc-cccC-----------CCCChHHHHHHHHHHHHHHHHhCCce
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGE-LESG-----------NAGEPAKLIRQRYREAADIIKKGKMC 224 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~--~~i~vs~~~-l~s~-----------~~Ge~~~~ir~~f~~A~~~~~~~~p~ 224 (438)
..+++|.||+|+|||++.++++..+.- ..+.+.... +.-. ..+.....+....+.+. ...|.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~L----R~~PD 335 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAAL----RQRPD 335 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTG----GGCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhh----ccCCC
Confidence 456999999999999999999988642 344444321 2100 00111112233333333 67899
Q ss_pred eEEecccc
Q 013704 225 CLFINDLD 232 (438)
Q Consensus 225 ILfIDEiD 232 (438)
+++++|+-
T Consensus 336 ~iivgEir 343 (511)
T 2oap_1 336 YIIVGEVR 343 (511)
T ss_dssp EEEESCCC
T ss_pred eEEeCCcC
Confidence 99999984
No 304
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.65 E-value=0.034 Score=57.01 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
..++|.||+|+|||++.++++..+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4578999999999999999999875
No 305
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.64 E-value=0.026 Score=49.96 Aligned_cols=28 Identities=14% Similarity=0.251 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
+++...+.|.||.|+|||+|.++|+..+
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3444678899999999999999999987
No 306
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.54 E-value=0.052 Score=54.51 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=24.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
..+|..++|.||.|+|||++++.||..+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4567889999999999999999999974
No 307
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.51 E-value=0.012 Score=54.58 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=17.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHH-HHh
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVF-AKM 183 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA-~~l 183 (438)
.+...+.|.||+|+|||++++.++ ...
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 445678999999999999999999 765
No 308
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.49 E-value=0.021 Score=58.88 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.++|.||||||||+++.++++.+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999885
No 309
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.48 E-value=0.025 Score=55.59 Aligned_cols=29 Identities=21% Similarity=0.332 Sum_probs=25.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 155 NVKVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 155 ~~~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.+++...+.|+||+|+|||+|+++|+..+
T Consensus 122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34556789999999999999999999987
No 310
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.43 E-value=0.03 Score=54.88 Aligned_cols=26 Identities=15% Similarity=0.057 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.+..+.|.||+|+|||++++.+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 56789999999999999999999874
No 311
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.40 E-value=0.024 Score=52.82 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=26.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCceEEEe
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS 191 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs 191 (438)
-.|.|+|..|||||++++.+++ +|++++..+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 4689999999999999999988 898876544
No 312
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.40 E-value=0.12 Score=52.94 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEec
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 192 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~ 192 (438)
+|..+++.||+|+|||+++..+|..+ +..+..+.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 57788999999999999999999874 455555554
No 313
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.19 E-value=0.032 Score=51.93 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
.....+.|.||.|+|||+|.++++....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3456788999999999999999999864
No 314
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.17 E-value=0.028 Score=51.16 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.+.|.||+|+|||++++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999986
No 315
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.16 E-value=0.075 Score=51.75 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=29.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh----CCceEEEecc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAG 193 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l----g~~~i~vs~~ 193 (438)
..+..++|.||+|+|||+++..+|..+ |..+..+.+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 356789999999999999999999763 5566666654
No 316
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.16 E-value=0.034 Score=51.60 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEe
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 191 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs 191 (438)
+.-|.|.||+|+|||++++.+++.+ |.+++.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 4678899999999999999999986 45555443
No 317
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.08 E-value=0.036 Score=49.85 Aligned_cols=33 Identities=21% Similarity=0.082 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEe
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 191 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs 191 (438)
...+.|.|++|+|||+++..++..+ |..+..+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 4578999999999999999999874 45554444
No 318
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.98 E-value=0.088 Score=49.95 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 013704 160 LILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
..+.|.|+||+|||+|..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999865
No 319
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=93.92 E-value=0.14 Score=58.40 Aligned_cols=24 Identities=25% Similarity=0.116 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
.+.+.|+||+|.|||+||+.+++.
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCccHHHHHHHHHHh
Confidence 578999999999999999999864
No 320
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.90 E-value=0.092 Score=61.27 Aligned_cols=29 Identities=24% Similarity=0.304 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
+++...+.|+||.|+|||+++++|.....
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 34456789999999999999999998743
No 321
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.82 E-value=0.044 Score=49.24 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
...+.|.||+|+|||++++.++..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 4578899999999999999999874
No 322
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.77 E-value=0.043 Score=51.82 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.+.-|.|.||+|+|||++++.+++.+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999999885
No 323
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.74 E-value=0.18 Score=51.36 Aligned_cols=76 Identities=12% Similarity=0.054 Sum_probs=45.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh-----CCceEEEecc---------------ccccCCCCChH-HHHHHH---HHHHH
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAG---------------ELESGNAGEPA-KLIRQR---YREAA 215 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~l-----g~~~i~vs~~---------------~l~s~~~Ge~~-~~ir~~---f~~A~ 215 (438)
.-++|.||||||||.|+..|++.. ++.++++-.+ .+......++. ..++.. ...|.
T Consensus 176 QR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV~d~~~~~~G~VV~atadep~~~r~~~a~~altiAE 255 (427)
T 3l0o_A 176 QRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIRESTNAIVIAAPFDMPPDKQVKVAELTLEMAK 255 (427)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSSCCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcchHHHHHHHhCCeEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 458899999999999999999863 4444443332 11122222322 222222 22233
Q ss_pred HHHHhCCceeEEeccccccc
Q 013704 216 DIIKKGKMCCLFINDLDAGA 235 (438)
Q Consensus 216 ~~~~~~~p~ILfIDEiD~l~ 235 (438)
......+..+|++|++-+.+
T Consensus 256 yfrd~G~dVLil~DslTR~A 275 (427)
T 3l0o_A 256 RLVEFNYDVVILLDSLTRLA 275 (427)
T ss_dssp HHHHTTCEEEEEEECHHHHH
T ss_pred HHHHcCCCEEEecccchHHH
Confidence 33346788899999987654
No 324
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.65 E-value=0.048 Score=48.08 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
...+|+||.|+|||+++++|+-.++
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3678999999999999999998775
No 325
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.62 E-value=0.066 Score=55.05 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=29.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCceEEEecc
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 193 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~ 193 (438)
.|..|++.|+||+|||+++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 46789999999999999999999874 4666666654
No 326
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.61 E-value=0.04 Score=59.16 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~l 183 (438)
..+++||||||||+++..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999877776653
No 327
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.56 E-value=0.17 Score=44.17 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
+..++|.|++|+|||+|.+.++..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999874
No 328
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.50 E-value=0.16 Score=56.06 Aligned_cols=24 Identities=21% Similarity=-0.028 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
...++|.||.|+|||++.+.++.-
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 357889999999999999999864
No 329
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.49 E-value=0.23 Score=48.96 Aligned_cols=27 Identities=33% Similarity=0.284 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.....+.|.|+||+|||+++.+++..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456778899999999999999998764
No 330
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=93.36 E-value=0.14 Score=52.09 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=28.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCceEEEecc
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 193 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~ 193 (438)
.++|++|+|+|||..+-.++...+...+.+...
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 489999999999999998888888777776654
No 331
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.32 E-value=0.12 Score=47.39 Aligned_cols=31 Identities=23% Similarity=0.404 Sum_probs=25.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh--CCceEEEe
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKM--GINPIMMS 191 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~l--g~~~i~vs 191 (438)
-|.|-|+.|+|||++++.+++.+ |.+++...
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~ 36 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR 36 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 47789999999999999999987 45555543
No 332
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.31 E-value=0.058 Score=48.64 Aligned_cols=26 Identities=19% Similarity=0.118 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.+..|+|.|++|+|||+|+.+++...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45679999999999999999999864
No 333
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.29 E-value=0.062 Score=50.36 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=27.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC----ceEE
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGI----NPIM 189 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~----~~i~ 189 (438)
..+.-|.|.|++|+|||++++.+++.++. +++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 34677889999999999999999998654 6555
No 334
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=93.26 E-value=0.17 Score=45.06 Aligned_cols=18 Identities=22% Similarity=0.005 Sum_probs=15.1
Q ss_pred cEEEEEcCCCCcHHHHHH
Q 013704 160 LILGIWGGKGQGKSFQCE 177 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~ 177 (438)
+.+++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 469999999999997544
No 335
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.14 E-value=0.054 Score=46.10 Aligned_cols=24 Identities=17% Similarity=0.129 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
...|++.|++|+|||+|+..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999999875
No 336
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=93.12 E-value=0.053 Score=50.20 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=26.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCC
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGI 185 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg~ 185 (438)
..++..|+|+|.||+||+++|+.+.+.+|.
T Consensus 8 ~~~~~II~itGk~~SGKd~va~~l~~~~g~ 37 (202)
T 3ch4_B 8 GAPRLVLLFSGKRKSGKDFVTEALQSRLGA 37 (202)
T ss_dssp CCCSEEEEEEECTTSSHHHHHHHHHHHHCT
T ss_pred cCCCEEEEEECCCCCChHHHHHHHHHHcCC
Confidence 346689999999999999999999887764
No 337
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.12 E-value=0.037 Score=58.75 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=29.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC----CceEEEecccc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGEL 195 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg----~~~i~vs~~~l 195 (438)
..+..+.|.|++|+|||+++++|+..++ ..+..++...+
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 4456789999999999999999999975 23444555443
No 338
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.07 E-value=0.13 Score=48.74 Aligned_cols=24 Identities=13% Similarity=0.109 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
...|+|.|+||+|||+|..++...
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 356899999999999999999864
No 339
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.04 E-value=0.05 Score=51.34 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=23.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
+.. ..+.|.||.|+|||+|.++|+...
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 455 678899999999999999999864
No 340
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.99 E-value=0.07 Score=49.50 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
+.-|.|.|++|+|||++++.+++.+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999999986
No 341
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.95 E-value=0.059 Score=46.96 Aligned_cols=26 Identities=15% Similarity=0.032 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
..+..|+|.|++|+|||+|...+...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence 44567999999999999999999874
No 342
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.94 E-value=0.061 Score=48.85 Aligned_cols=27 Identities=22% Similarity=0.155 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCc
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGIN 186 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~ 186 (438)
-.++||.|++|+|||++|.++.+. |..
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~ 42 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQ 42 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCe
Confidence 369999999999999999999874 543
No 343
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.93 E-value=0.048 Score=51.27 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=23.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
+.+...+.|.||.|+|||+|.++|+...
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444678999999999999999998763
No 344
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.90 E-value=0.058 Score=48.19 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 013704 160 LILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
.-++|.||+|+|||+|.+.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45889999999999999999976
No 345
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.88 E-value=0.13 Score=47.96 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=28.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh--CCceEEEec
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM--GINPIMMSA 192 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l--g~~~i~vs~ 192 (438)
..+..+++.|.+|+|||+++..+|..+ |..+..++.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 456788899999999999999999776 556655553
No 346
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=92.87 E-value=0.24 Score=47.27 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
+..|.|.|+||+|||+|..++...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999999875
No 347
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.86 E-value=0.058 Score=48.06 Aligned_cols=24 Identities=21% Similarity=0.158 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.-++|.||+|+|||+|.+.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 568899999999999999999863
No 348
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.86 E-value=0.076 Score=46.71 Aligned_cols=26 Identities=19% Similarity=0.137 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
..+..|++.|++|+|||+|..+++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999875
No 349
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.85 E-value=0.042 Score=51.17 Aligned_cols=27 Identities=26% Similarity=0.170 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.....+.|.||.|+|||+|.++|+...
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 334568899999999999999998764
No 350
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=92.85 E-value=0.46 Score=53.96 Aligned_cols=23 Identities=17% Similarity=-0.036 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFA 181 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~ 181 (438)
...++|.||.|+|||++.+.++-
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iGl 811 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAGL 811 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 46899999999999999999843
No 351
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.83 E-value=0.051 Score=51.04 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.+...+.|.||.|+|||+|.++|+...
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344578999999999999999998764
No 352
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.82 E-value=0.14 Score=52.64 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 013704 160 LILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
..|+|.|.||+|||+|..++...
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 46889999999999999998754
No 353
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.76 E-value=0.18 Score=47.81 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013704 161 ILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~ 182 (438)
.|.|.|+||+|||+|..++...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4788999999999999999765
No 354
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.71 E-value=0.067 Score=45.22 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
+..|++.|+||+|||+|...+...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999865
No 355
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.70 E-value=0.067 Score=45.23 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013704 161 ILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~ 182 (438)
.+++.|++|+|||+|+..++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999875
No 356
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.59 E-value=0.072 Score=45.08 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
+..|++.|++|+|||+|...+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999999875
No 357
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.58 E-value=0.092 Score=44.83 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
+.+..|++.|++|+|||+|...+...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999764
No 358
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.54 E-value=0.057 Score=51.56 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
.....+.|.||.|+|||+|.++|+.-..
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4445788999999999999999987643
No 359
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.54 E-value=0.073 Score=44.83 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 013704 160 LILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
..|++.|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999876
No 360
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.49 E-value=0.051 Score=48.65 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
..+.|.||+|+|||+|++.|+..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4688999999999999999999853
No 361
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.46 E-value=0.053 Score=50.05 Aligned_cols=24 Identities=21% Similarity=0.200 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
...+.|.||.|+|||+|.++|+..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999999975
No 362
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.42 E-value=0.061 Score=50.66 Aligned_cols=28 Identities=25% Similarity=0.208 Sum_probs=23.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
+.+...+.|.||.|+|||+|.++|+...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445678999999999999999999764
No 363
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=92.39 E-value=0.073 Score=58.94 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
...+++||||||||+++..++..+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999877777653
No 364
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.37 E-value=0.077 Score=45.72 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
.+..|++.|++|+|||+|...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3567999999999999999999875
No 365
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.37 E-value=0.073 Score=50.95 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=23.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
+.....+.|.||.|+|||+|.++|+..
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344467899999999999999999985
No 366
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.37 E-value=0.085 Score=52.46 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCc
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGIN 186 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~~ 186 (438)
...+.|.||+|+|||+|+++|+......
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4678999999999999999999986543
No 367
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.32 E-value=0.079 Score=45.44 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
+.-|+|.|+||+|||+|.+.+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456899999999999999998754
No 368
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.29 E-value=0.073 Score=53.49 Aligned_cols=27 Identities=26% Similarity=0.129 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.....+.|.||.|||||+|.++||.-.
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 334568899999999999999999863
No 369
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.27 E-value=0.1 Score=44.97 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=22.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
+.+..|++.|++|+|||+|...+...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567999999999999999999764
No 370
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.25 E-value=0.097 Score=47.33 Aligned_cols=26 Identities=27% Similarity=0.551 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
...++|.|++|+|||+++..++..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 46788999999999999999998864
No 371
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.19 E-value=0.071 Score=45.29 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 013704 160 LILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
..|++.|++|+|||+|..++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999875
No 372
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.17 E-value=0.081 Score=50.77 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.+.|.||+|+|||+|.++|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999874
No 373
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.16 E-value=0.24 Score=47.48 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 013704 160 LILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
..|.|.|+||+|||+|..++...
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 45889999999999999999864
No 374
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.16 E-value=0.068 Score=51.20 Aligned_cols=28 Identities=18% Similarity=0.149 Sum_probs=23.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
+.....+.|.||.|+|||+|.++|+...
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3444678899999999999999998764
No 375
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.15 E-value=0.069 Score=50.94 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=23.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
+.+...+.|.||.|+|||+|.++|+...
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3445679999999999999999998764
No 376
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.09 E-value=0.071 Score=50.45 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
.....+.|.||.|+|||+|.++|+..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33457889999999999999999974
No 377
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.09 E-value=0.07 Score=51.23 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=23.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
+.+...+.|.||.|+|||+|.++|+...
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3444678999999999999999999864
No 378
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.06 E-value=0.083 Score=45.61 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 013704 160 LILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
.-+.|.|+||+|||+|.++++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 45889999999999999999863
No 379
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.06 E-value=0.11 Score=45.47 Aligned_cols=25 Identities=16% Similarity=0.024 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
.+.-|++.|++|+|||+|..++...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999999876
No 380
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.06 E-value=0.061 Score=51.14 Aligned_cols=27 Identities=22% Similarity=0.204 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.....+.|.||.|+|||+|.++|+...
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344578899999999999999998764
No 381
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.02 E-value=0.069 Score=47.04 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 013704 161 ILGIWGGKGQGKSFQCELVFA 181 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~ 181 (438)
-++|.|++|+|||+|.+.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999986
No 382
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.02 E-value=0.091 Score=44.70 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 013704 160 LILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
..|++.|++|+|||+|...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 383
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=92.01 E-value=1.3 Score=42.28 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 013704 160 LILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
.-|.+.|+||+|||+|..++...
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTS
T ss_pred CeEEEEcCCCCCHHHHHHHHHCC
Confidence 45888999999999999999865
No 384
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.00 E-value=0.083 Score=53.11 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.....+.|.||.|||||+|.++||.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 334568899999999999999999863
No 385
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.00 E-value=0.083 Score=53.02 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.....+.|.||.|||||+|.++||.-.
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 334568899999999999999999863
No 386
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.98 E-value=0.063 Score=50.81 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.+...+.|.||.|+|||+|.++|+...
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344678999999999999999998864
No 387
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.96 E-value=0.093 Score=44.66 Aligned_cols=24 Identities=25% Similarity=0.221 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
...|++.|++|+|||+|.+.+...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356899999999999999999876
No 388
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.94 E-value=0.092 Score=45.19 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
+..|++.|++|+|||+|...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999999865
No 389
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.92 E-value=0.065 Score=50.41 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
....+.|.||.|+|||+|.++|+...
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568899999999999999998764
No 390
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.88 E-value=0.098 Score=44.36 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 013704 160 LILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
..|++.|++|+|||+|.+++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999875
No 391
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.88 E-value=0.12 Score=46.91 Aligned_cols=26 Identities=19% Similarity=0.388 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
+..++|.|++|+|||+|+..++....
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45688889999999999999998853
No 392
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.88 E-value=0.096 Score=44.66 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
+..|++.|++|+|||+|.+.+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 457899999999999999999875
No 393
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.86 E-value=0.066 Score=49.98 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.+...+.|.||.|+|||+|.++|+...
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344578899999999999999999874
No 394
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.85 E-value=0.087 Score=53.33 Aligned_cols=27 Identities=19% Similarity=0.108 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.....+.|.||.|||||+|.++|+.-.
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 334568899999999999999999863
No 395
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.84 E-value=0.12 Score=51.19 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
......+.|.||||+|||+|.++++..+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4455778999999999999999999764
No 396
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.83 E-value=0.088 Score=53.10 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.....+.|.||.|||||+|.++||.-.
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 344578899999999999999999863
No 397
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.83 E-value=0.067 Score=49.53 Aligned_cols=31 Identities=19% Similarity=0.105 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCceE
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGINPI 188 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i 188 (438)
+.+..+.|.||.|+|||++++.++.. +..++
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~-~g~v~ 48 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY-KNDIC 48 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG-TTTEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc-cCCeE
Confidence 44567889999999999999999987 44433
No 398
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.80 E-value=0.1 Score=44.35 Aligned_cols=24 Identities=21% Similarity=0.123 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
+..|++.|++|+|||+|..++...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999874
No 399
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.80 E-value=0.073 Score=49.38 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
...+.|.||.|+|||+|.++|+...
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998864
No 400
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.77 E-value=0.08 Score=50.59 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.....+.|.||.|+|||+|.++|+...
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344578899999999999999999763
No 401
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.77 E-value=0.08 Score=50.46 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.....+.|.||.|+|||+|.++|+...
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 344578899999999999999998764
No 402
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.72 E-value=0.074 Score=53.17 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.....+.|.||.|||||+|.++||.-.
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 334578899999999999999999863
No 403
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.72 E-value=0.069 Score=51.55 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.+...+.|.||.|+|||+|.++|+...
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 334578999999999999999999763
No 404
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.72 E-value=0.12 Score=45.79 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
....|+|.|++|+|||+|...+...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999999876
No 405
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.71 E-value=0.11 Score=44.08 Aligned_cols=22 Identities=14% Similarity=-0.058 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013704 161 ILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~ 182 (438)
.|++.|++|+|||+|...+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999876
No 406
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.71 E-value=0.18 Score=45.86 Aligned_cols=32 Identities=28% Similarity=0.335 Sum_probs=26.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCceEEEecc
Q 013704 162 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 193 (438)
Q Consensus 162 lLL~GPPGtGKT~lA~aIA~~l---g~~~i~vs~~ 193 (438)
|.|-|+-|+|||++++.+++.+ |.+++...-+
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP 37 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREP 37 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 6688999999999999999885 6777665543
No 407
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.64 E-value=0.12 Score=44.43 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
.+.-|++.|+||+|||+|...+...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3467999999999999999998754
No 408
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.62 E-value=0.1 Score=44.58 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 013704 161 ILGIWGGKGQGKSFQCELVFA 181 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~ 181 (438)
-|++.|+||+|||+|...+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 488999999999999999863
No 409
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.60 E-value=0.072 Score=51.03 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.....+.|.||.|+|||+|.++|+...
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 334578899999999999999999764
No 410
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.60 E-value=0.1 Score=44.42 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 013704 160 LILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
..|++.|++|+|||+|...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 411
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.60 E-value=0.084 Score=52.95 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
....+.|.||.|||||+|.++||.-.
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34568899999999999999999863
No 412
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=91.59 E-value=0.18 Score=47.13 Aligned_cols=33 Identities=18% Similarity=0.005 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHH-HHHHHHHH--hCCceEEEe
Q 013704 159 PLILGIWGGKGQGKSF-QCELVFAK--MGINPIMMS 191 (438)
Q Consensus 159 p~glLL~GPPGtGKT~-lA~aIA~~--lg~~~i~vs 191 (438)
....+++||.|+|||+ |.+.+-+. .+..++.+.
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~k 63 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFK 63 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 4677889999999999 55555443 355555443
No 413
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=91.59 E-value=0.092 Score=61.27 Aligned_cols=27 Identities=30% Similarity=0.240 Sum_probs=23.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
+++...+.|+||.|+|||++++++..-
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcC
Confidence 444567999999999999999999886
No 414
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.55 E-value=0.096 Score=44.55 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 013704 161 ILGIWGGKGQGKSFQCELVFA 181 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~ 181 (438)
-++|.|+||+|||+|.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 588999999999999999864
No 415
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.55 E-value=0.11 Score=45.59 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
...-|++.|++|+|||+|++.+...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3467899999999999999999875
No 416
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.53 E-value=0.11 Score=44.62 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 013704 160 LILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
.-|++.|++|+|||+|...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999865
No 417
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=91.52 E-value=0.11 Score=57.63 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=23.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH----hCCceEEEecc
Q 013704 161 ILGIWGGKGQGKSFQCELVFAK----MGINPIMMSAG 193 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~----lg~~~i~vs~~ 193 (438)
..+++||||||||+++..+... .+..++.+..+
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~t 413 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS 413 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCc
Confidence 5789999999999987666544 24455555443
No 418
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.50 E-value=0.076 Score=50.42 Aligned_cols=26 Identities=27% Similarity=0.220 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
....+.|.||.|+|||+|.++|+...
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34568899999999999999998764
No 419
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=91.50 E-value=0.096 Score=49.64 Aligned_cols=27 Identities=15% Similarity=0.274 Sum_probs=24.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCce
Q 013704 161 ILGIWGGKGQGKSFQCELVFAKMGINP 187 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~lg~~~ 187 (438)
.|.|+|++|+|||++++.+.+.+|++.
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 588999999999999999999888664
No 420
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.44 E-value=0.088 Score=53.07 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
....+.|.||.|||||+|.++||.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 34568899999999999999999863
No 421
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.39 E-value=0.12 Score=44.77 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
...|+|.|++|+|||+|...++..
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 467999999999999999999875
No 422
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.37 E-value=0.13 Score=45.12 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
.+..+++.|++|+|||+|...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999754
No 423
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.37 E-value=0.12 Score=44.42 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
+..|++.|++|+|||+|.+++...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999876
No 424
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.37 E-value=0.079 Score=51.17 Aligned_cols=27 Identities=19% Similarity=0.101 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.....+.|.||.|+|||+|.++|+...
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 334568899999999999999999764
No 425
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.36 E-value=0.12 Score=44.40 Aligned_cols=24 Identities=29% Similarity=0.188 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
...|++.|++|+|||+|...+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999999876
No 426
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.35 E-value=0.12 Score=44.77 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
|...+|+||.|+|||++..||+-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999998765
No 427
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=91.33 E-value=0.25 Score=50.42 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013704 161 ILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~ 182 (438)
.|.|.|.||+|||+|...++..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999998764
No 428
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.32 E-value=0.079 Score=50.33 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.....+.|.||.|+|||+|.++|+...
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334578899999999999999999864
No 429
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.31 E-value=0.062 Score=48.07 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=21.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
.....+.|.|++|+|||+|.++++..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44567999999999999999998753
No 430
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=91.31 E-value=0.11 Score=45.51 Aligned_cols=25 Identities=12% Similarity=0.017 Sum_probs=21.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFA 181 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~ 181 (438)
+.+..|++.|++|+|||+|...+..
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc
Confidence 4567899999999999999999853
No 431
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.30 E-value=0.1 Score=45.25 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
+.-|++.|++|+|||+|..++...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999875
No 432
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.29 E-value=0.15 Score=44.10 Aligned_cols=25 Identities=12% Similarity=-0.094 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
....|++.|++|+|||+|...+...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999999864
No 433
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.28 E-value=0.13 Score=44.95 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
..-++|.|+||+|||+|.++++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356889999999999999999875
No 434
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.16 E-value=0.11 Score=52.63 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
.....+.|.||.|||||+|.++|+..
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 44467899999999999999999974
No 435
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=91.16 E-value=0.13 Score=45.53 Aligned_cols=24 Identities=17% Similarity=0.045 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
+.-|++.|+||+|||+|.+.+...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 356899999999999999999874
No 436
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.16 E-value=0.12 Score=45.18 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
+..|++.|++|+|||+|+..++..
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 357899999999999999999876
No 437
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.16 E-value=0.12 Score=44.84 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
...-|++.|++|+|||+|.+.+...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3467999999999999999999875
No 438
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.12 E-value=0.075 Score=53.20 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.....+.|.||.|||||+|.++||.-.
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 334578899999999999999999863
No 439
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.11 E-value=0.13 Score=45.29 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
.....|+|.|++|+|||+|...+...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 33467999999999999999999875
No 440
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=91.08 E-value=0.21 Score=55.06 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 013704 160 LILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
..+++.||+|+|||+++..++..
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999977776554
No 441
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.07 E-value=0.13 Score=44.41 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
+..|++.|++|+|||+|...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 457999999999999999999875
No 442
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=91.04 E-value=1.4 Score=43.30 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=21.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
..| -|.+.|++|+|||++.+++...
T Consensus 33 ~lp-~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 33 SLP-AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCC-EEEEECBTTSSHHHHHHHHHTS
T ss_pred cCC-EEEEECCCCCcHHHHHHHHhCC
Confidence 445 6888899999999999999874
No 443
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.02 E-value=0.11 Score=45.15 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=21.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFA 181 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~ 181 (438)
+.+..|++.|++|+|||+|...+..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999998874
No 444
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=91.01 E-value=0.12 Score=44.49 Aligned_cols=25 Identities=28% Similarity=0.118 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
....|++.|++|+|||+|+.++...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999998754
No 445
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.98 E-value=0.13 Score=45.00 Aligned_cols=26 Identities=23% Similarity=0.138 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
..+.-|+|.|++|+|||+|..++...
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 33467999999999999999999875
No 446
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.97 E-value=0.17 Score=44.39 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
.....|+|.|++|+|||+|..++...
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcC
Confidence 34567999999999999999999874
No 447
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.95 E-value=0.15 Score=45.32 Aligned_cols=26 Identities=15% Similarity=0.058 Sum_probs=21.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
+.+..|+|.|++|+|||+|...+...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 44578999999999999999999864
No 448
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.94 E-value=0.14 Score=44.16 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
..+..|+|.|++|+|||+|...+...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 34567999999999999999999875
No 449
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=90.92 E-value=0.75 Score=43.36 Aligned_cols=33 Identities=18% Similarity=0.064 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH---hCCceEEEe
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK---MGINPIMMS 191 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs 191 (438)
....+++||.|+|||+.+-..+.. .|..++.+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 356778999999999765554443 355666554
No 450
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.84 E-value=0.11 Score=51.77 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 013704 160 LILGIWGGKGQGKSFQCELVFAKMG 184 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~lg 184 (438)
..++|.||.|+|||+++++++....
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4699999999999999999998854
No 451
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.76 E-value=0.17 Score=43.89 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
...|+|.|++|+|||+|...+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 467899999999999999999865
No 452
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.75 E-value=0.14 Score=44.24 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 013704 160 LILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
..|++.|++|+|||+|...+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 56899999999999999999864
No 453
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.70 E-value=0.16 Score=44.34 Aligned_cols=26 Identities=19% Similarity=0.106 Sum_probs=22.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
+.+..|++.|++|+|||+|...+...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999864
No 454
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.69 E-value=0.13 Score=44.69 Aligned_cols=22 Identities=23% Similarity=0.081 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 013704 161 ILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 161 glLL~GPPGtGKT~lA~aIA~~ 182 (438)
.|++.|++|+|||+|...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999865
No 455
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.67 E-value=0.12 Score=49.55 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
...+.|.||.|+|||+|.++|+...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568899999999999999999765
No 456
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.65 E-value=0.15 Score=44.53 Aligned_cols=24 Identities=17% Similarity=0.319 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
..-|+|.|+||+|||+|.+.+...
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 457999999999999999888765
No 457
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.61 E-value=0.12 Score=50.21 Aligned_cols=28 Identities=18% Similarity=0.415 Sum_probs=23.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
+.....+.|.||.|+|||+|.++|+...
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3444678899999999999999998763
No 458
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.55 E-value=0.16 Score=44.75 Aligned_cols=25 Identities=20% Similarity=-0.000 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
..-|+|.|++|+|||+|...+....
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 4579999999999999999999874
No 459
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.54 E-value=0.15 Score=44.71 Aligned_cols=24 Identities=17% Similarity=-0.009 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
...|+|.|++|+|||+|...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457999999999999999999876
No 460
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.52 E-value=0.15 Score=44.68 Aligned_cols=25 Identities=16% Similarity=0.065 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
.+..|+|.|++|+|||+|...+...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3467999999999999999999865
No 461
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.47 E-value=0.18 Score=44.13 Aligned_cols=26 Identities=15% Similarity=-0.061 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
+....|++.|++|+|||+|...+...
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999854
No 462
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.41 E-value=0.14 Score=45.27 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
.....|+|.|++|+|||+|...+...
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcC
Confidence 34567999999999999999999875
No 463
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.41 E-value=0.22 Score=49.65 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCc
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~lg~~ 186 (438)
.+...+.|.||+|+|||+|.+.|+......
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 334568999999999999999999997654
No 464
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.39 E-value=0.14 Score=45.03 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
+....|+|.|++|+|||+|...+...
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcC
Confidence 34467999999999999999999875
No 465
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.38 E-value=0.16 Score=45.02 Aligned_cols=25 Identities=32% Similarity=0.304 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
....|+|.|++|+|||+|...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3467999999999999999999876
No 466
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.33 E-value=0.16 Score=44.31 Aligned_cols=24 Identities=29% Similarity=0.180 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
+..|+|.|++|+|||+|..++...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999875
No 467
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.33 E-value=0.16 Score=43.91 Aligned_cols=24 Identities=21% Similarity=0.124 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
+..|+|.|++|+|||+|...+...
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 457899999999999999999854
No 468
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.30 E-value=0.16 Score=52.70 Aligned_cols=25 Identities=20% Similarity=0.153 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
...++|.||.|+|||+|++.|+...
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3468899999999999999999863
No 469
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.28 E-value=0.16 Score=44.74 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
..-|+|.|++|+|||+|...+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 357999999999999999998875
No 470
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=90.26 E-value=0.26 Score=50.68 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=25.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCc
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN 186 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~ 186 (438)
+.....+.|.||+|||||+|.+.|+......
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 3444578899999999999999999997654
No 471
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.21 E-value=0.25 Score=42.99 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 013704 160 LILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
.-|+|.|++|+|||+|...+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999876
No 472
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=90.15 E-value=0.19 Score=45.10 Aligned_cols=24 Identities=13% Similarity=0.036 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
...|+|.|++|+|||+|...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999875
No 473
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.14 E-value=0.2 Score=44.65 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
...-|+|.|++|+|||+|..++...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999999865
No 474
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=90.13 E-value=0.29 Score=48.87 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=26.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH---hCCceEEEec
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 192 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~---lg~~~i~vs~ 192 (438)
..++++.||+|+|||++++.++.. .+..++.++.
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 456899999999999999999887 3555555553
No 475
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.13 E-value=0.19 Score=44.09 Aligned_cols=26 Identities=12% Similarity=0.114 Sum_probs=22.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
..+.-+++.|++|+|||+|.+.+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999998765
No 476
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.09 E-value=0.19 Score=44.46 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
...|+|.|++|+|||+|...+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999999865
No 477
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=90.09 E-value=0.17 Score=45.18 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFA 181 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~ 181 (438)
+.-++|.|++|+|||+|.+.+..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999999874
No 478
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.07 E-value=0.17 Score=44.95 Aligned_cols=25 Identities=16% Similarity=-0.004 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
....|+|.|++|+|||+|+.++...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3467999999999999999999875
No 479
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.06 E-value=0.18 Score=44.56 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
..-|+|.|++|+|||+|...+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999888765
No 480
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.04 E-value=0.13 Score=44.34 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
..-|+|.|++|+|||+|...++..
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999999875
No 481
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.02 E-value=0.2 Score=44.90 Aligned_cols=26 Identities=12% Similarity=-0.005 Sum_probs=21.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
.....|++.|++|+|||+|...+...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 44578999999999999999998864
No 482
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=90.01 E-value=0.18 Score=44.35 Aligned_cols=25 Identities=28% Similarity=0.143 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
...-|+|.|++|+|||+|...+...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3467999999999999999999865
No 483
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=89.99 E-value=0.18 Score=44.43 Aligned_cols=26 Identities=19% Similarity=0.098 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
..+..|+|.|++|+|||+|...+...
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 34467999999999999999999876
No 484
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.89 E-value=0.17 Score=50.88 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
.....+.|.||.|+|||+|.++|+.-.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 344678899999999999999999863
No 485
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=89.88 E-value=0.36 Score=46.87 Aligned_cols=25 Identities=20% Similarity=0.107 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
++.-+.|.|+||+|||+|..++...
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3456779999999999999999875
No 486
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=89.85 E-value=0.17 Score=44.96 Aligned_cols=25 Identities=16% Similarity=0.018 Sum_probs=21.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH
Q 013704 157 KVPLILGIWGGKGQGKSFQCELVFA 181 (438)
Q Consensus 157 ~~p~glLL~GPPGtGKT~lA~aIA~ 181 (438)
+....|++.|++|+|||+|...+..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3456799999999999999999864
No 487
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.84 E-value=0.12 Score=50.69 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=23.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 156 VKVPLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 156 ~~~p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
+++...+.|.||.|+|||+|+++|+...
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 3445679999999999999999998863
No 488
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=89.81 E-value=0.18 Score=44.73 Aligned_cols=24 Identities=17% Similarity=-0.009 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
...|+|.|++|+|||+|...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999999999865
No 489
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=89.79 E-value=0.23 Score=49.35 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKM 183 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~l 183 (438)
...+.|.|+||+|||+|.++++..+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4678899999999999999999863
No 490
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=89.70 E-value=0.19 Score=44.70 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
..-|+|.|++|+|||+|...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999875
No 491
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=89.68 E-value=0.32 Score=48.74 Aligned_cols=76 Identities=17% Similarity=0.256 Sum_probs=40.7
Q ss_pred hccccccccCCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCceEEEeccccccCCC
Q 013704 121 RQYSLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNA 200 (438)
Q Consensus 121 r~~~~~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lA~aIA~~lg~~~i~vs~~~l~s~~~ 200 (438)
..|.||.+.++ .--.++.+.++..++...+.-. ...|+-||..|+|||+... |.+ . .....
T Consensus 71 ~~F~fD~Vf~~-~sQ~~Vy~~~~~~lv~~~l~G~----N~tIfAYGqTGSGKTyTM~------G~~------~--~~~~~ 131 (358)
T 2nr8_A 71 WSFKLDGVLHD-ASQDLVYETVAKDVVSQALDGY----NGTIMCYGQTGAGKTYTMM------GAT------E--NYKHR 131 (358)
T ss_dssp EEEECSEEEES-CCHHHHHHHHTHHHHHHHHTTC----CEEEEEEESTTSSHHHHHT------BCS------S--CGGGB
T ss_pred eEEECCeecCC-cCHHHHHHHHHHHHHHHHhCCC----ceEEEEECCCCCCCceEec------ccc------c--ccccC
Confidence 45666776532 1112333344344444444322 3568889999999998752 211 0 00123
Q ss_pred CChHHHHHHHHHHHH
Q 013704 201 GEPAKLIRQRYREAA 215 (438)
Q Consensus 201 Ge~~~~ir~~f~~A~ 215 (438)
|--.+.++.+|+...
T Consensus 132 Giipra~~~lF~~i~ 146 (358)
T 2nr8_A 132 GILPRALQQVFRMIE 146 (358)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHh
Confidence 445667777887653
No 492
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=89.63 E-value=0.91 Score=43.23 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=29.6
Q ss_pred CCCcEEEEEcC-CCCcHHHHHHHHHHH---hCCceEEEecc
Q 013704 157 KVPLILGIWGG-KGQGKSFQCELVFAK---MGINPIMMSAG 193 (438)
Q Consensus 157 ~~p~glLL~GP-PGtGKT~lA~aIA~~---lg~~~i~vs~~ 193 (438)
+.++.|+++++ +|+|||++|..+|.. .|..++.+++.
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D 120 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGD 120 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 45678888877 899999999888877 47788887765
No 493
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=89.62 E-value=0.2 Score=45.29 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
...-|+|.|++|+|||+|++.++..
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4467999999999999999999875
No 494
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=89.51 E-value=0.19 Score=46.42 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
.+..|+|.|++|+|||+|..++...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 3467999999999999999999875
No 495
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=89.46 E-value=0.22 Score=45.44 Aligned_cols=27 Identities=26% Similarity=0.197 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCC
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAKMGI 185 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~lg~ 185 (438)
|...+|+||.|+|||++..||.-.++.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 456789999999999999999877654
No 496
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.37 E-value=0.21 Score=44.99 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
....|+|.|++|+|||+|++.+...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3467899999999999999999865
No 497
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=89.33 E-value=0.21 Score=43.52 Aligned_cols=25 Identities=16% Similarity=-0.072 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
....|++.|++|+|||+|...+...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999999864
No 498
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=89.21 E-value=0.24 Score=43.77 Aligned_cols=25 Identities=12% Similarity=-0.036 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 158 VPLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 158 ~p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
....|+|.|++|+|||+|...+...
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999998754
No 499
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=89.16 E-value=0.22 Score=43.72 Aligned_cols=23 Identities=17% Similarity=0.036 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 013704 160 LILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 160 ~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
..|++.|++|+|||+|...+...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57899999999999999999876
No 500
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=89.03 E-value=0.13 Score=44.68 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=10.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 013704 159 PLILGIWGGKGQGKSFQCELVFAK 182 (438)
Q Consensus 159 p~glLL~GPPGtGKT~lA~aIA~~ 182 (438)
...|+|.|++|+|||+|...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999998755
Done!