BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013706
(438 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 131/215 (60%), Gaps = 12/215 (5%)
Query: 142 RALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP- 200
RA S K ++EL+ EL +GL +K ++R+ A +L++ R+ LGL A P
Sbjct: 14 RAEYEGSGAKEVLEELDREL---IGLKPVKDRIRETAALLLVERARQKLGL---AHETPT 67
Query: 201 -HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK 259
HM+F GNPGTGKT VA + LL+ +G + + V R DLVG+++GHT PKT+ +K
Sbjct: 68 LHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLK 127
Query: 260 EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVI 317
A GG+LF+DEAY L + +++DYG EA+E ++ VM+ + +VVI AGY++ M+
Sbjct: 128 RAMGGVLFIDEAYYL--YRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFF 185
Query: 318 ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ 352
SN GF R+ F D++ EEL +I +++Q
Sbjct: 186 QSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQ 220
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 131/215 (60%), Gaps = 12/215 (5%)
Query: 142 RALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP- 200
RA S K ++EL+ EL +GL +K ++R+ A +L++ R+ LGL A P
Sbjct: 7 RAEYEGSGAKEVLEELDREL---IGLKPVKDRIRETAALLLVERARQKLGL---AHETPT 60
Query: 201 -HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK 259
HM+F GNPGTGKT VA + LL+ +G + + V R DLVG+++GHT PKT+ +K
Sbjct: 61 LHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLK 120
Query: 260 EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVI 317
A GG+LF+DEAY L + +++DYG EA+E ++ VM+ + +VVI AGY++ M+
Sbjct: 121 RAMGGVLFIDEAYYL--YRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFF 178
Query: 318 ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ 352
SN GF R+ F D++ EEL +I +++Q
Sbjct: 179 QSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQ 213
>pdb|3SYK|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
pdb|3SYK|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx,
Selenomethionine Structure
Length = 309
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 127/215 (59%), Gaps = 12/215 (5%)
Query: 142 RALEACSETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPP- 200
RA S K ++EL+ EL +GL +K ++R+ A +L++ R+ LGL A P
Sbjct: 14 RAEYEGSGAKEVLEELDREL---IGLKPVKDRIRETAALLLVERARQKLGL---AHETPT 67
Query: 201 -HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK 259
H +F GNPGTGKT VA LL+ +G + + V R DLVG+++GHT PKT+ +K
Sbjct: 68 LHXSFTGNPGTGKTTVALKXAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLK 127
Query: 260 EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--VVVIFAGYSEPMKRVI 317
A GG+LF+DEAY L + +++DYG EA+E ++ V + + +VVI AGY++ +
Sbjct: 128 RAXGGVLFIDEAYYL--YRPDNERDYGQEAIEILLQVXENNRDDLVVILAGYADRXENFF 185
Query: 318 ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ 352
SN GF R+ F D++ EEL +I +++Q
Sbjct: 186 QSNPGFRSRIAHHIEFPDYSDEELFEIAGHXLDDQ 220
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 77/128 (60%), Gaps = 9/128 (7%)
Query: 5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
+TPLH++A E+VK LLE ++ A++ G TPLH+AA+NG E KLLL G
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 65 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
A + AK NG TPLHL+ R+ VK LLE AD +AKD G+TPL HL+ G
Sbjct: 59 ADVNAKDKNGRTPLHLAA----RNGHLEVVKLLLEAGADVNAKDKNGRTPL-HLAARNGH 113
Query: 125 AKLRELLL 132
++ +LLL
Sbjct: 114 LEVVKLLL 121
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 57/92 (61%), Gaps = 5/92 (5%)
Query: 41 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 100
G TPLH+AA+NG E KLLL GA + AK NG TPLHL+ R+ VK LLE
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA----RNGHLEVVKLLLEA 57
Query: 101 NADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 132
AD +AKD G+TPL HL+ G ++ +LLL
Sbjct: 58 GADVNAKDKNGRTPL-HLAARNGHLEVVKLLL 88
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
+TPLH++A E+VK LLE ++ A++ G TPLH+AA+NG E KLLL G
Sbjct: 69 RTPLHLAARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
Query: 65 AF 66
A+
Sbjct: 125 AY 126
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 75/129 (58%), Gaps = 9/129 (6%)
Query: 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
+ TPLH++A EIV+ LL++ ++ A + YG TPLH+AA NG E ++LL
Sbjct: 46 LGHTPLHLAAKTGHLEIVEVLLKY----GADVNAWDNYGATPLHLAADNGHLEIVEVLLK 101
Query: 63 HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 122
HGA + AK G TPLHL+ Y E V+ LL+Y AD +A+D GKT D +S
Sbjct: 102 HGADVNAKDYEGFTPLHLAA-YDGHLE---IVEVLLKYGADVNAQDKFGKTAFD-ISIDN 156
Query: 123 GSAKLRELL 131
G+ L E+L
Sbjct: 157 GNEDLAEIL 165
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 60/100 (60%), Gaps = 5/100 (5%)
Query: 33 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
++ A + G TPLH+AAK G E ++LL +GA + A N G TPLHL+ +
Sbjct: 39 DVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAA----DNGHLE 94
Query: 93 TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 132
V+ LL++ AD +AKD EG TPL HL+ G ++ E+LL
Sbjct: 95 IVEVLLKHGADVNAKDYEGFTPL-HLAAYDGHLEIVEVLL 133
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 5/94 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
AA+ G ++ ++L+A+GA + A G TPLHL+ ++ V+ LL+Y AD +A
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAA----KTGHLEIVEVLLKYGADVNAW 76
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 141
DN G TPL HL+ G ++ E+LL H + +
Sbjct: 77 DNYGATPL-HLAADNGHLEIVEVLLKHGADVNAK 109
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 66/113 (58%), Gaps = 8/113 (7%)
Query: 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
+TPLH++A E+VK LL + A++ G+TPLH+AA+NG E KLLL+
Sbjct: 37 GKTPLHLAAENGHKEVVKLLLSQ----GADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQ 92
Query: 64 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116
GA AK ++G TPLHL+ + VK LL AD + D++G+TPLD
Sbjct: 93 GADPNAKDSDGKTPLHLAAENGHKE----VVKLLLSQGADPNTSDSDGRTPLD 141
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 9/113 (7%)
Query: 20 VKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLH 79
VK LLE + ++ A + G+TPLH+AA+NG E KLLL+ GA AK ++G TPLH
Sbjct: 20 VKDLLE----NGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLH 75
Query: 80 LSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 132
L+ + VK LL AD +AKD++GKTPL HL+ G ++ +LLL
Sbjct: 76 LAAENGHKE----VVKLLLSQGADPNAKDSDGKTPL-HLAAENGHKEVVKLLL 123
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
+TPLH++A E+VK LL + A++ G+TPLH+AA+NG E KLLL+
Sbjct: 70 GKTPLHLAAENGHKEVVKLLLSQ----GADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQ 125
Query: 64 GAFIEAKANNGMTPLHLS 81
GA ++G TPL L+
Sbjct: 126 GADPNTSDSDGRTPLDLA 143
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
AA+NG + K LL +GA + A ++G TPLHL+ + VK LL AD +AK
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKE----VVKLLLSQGADPNAK 66
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLL 132
D++GKTPL HL+ G ++ +LLL
Sbjct: 67 DSDGKTPL-HLAAENGHKEVVKLLL 90
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
+TPLH++A E+VK LL + + G TPL +A ++G E KLL
Sbjct: 103 GKTPLHLAAENGHKEVVKLLLSQ----GADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
Query: 64 GAFIE 68
G ++E
Sbjct: 159 GGWLE 163
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 73/126 (57%), Gaps = 9/126 (7%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPLH++A EIV+ LL+ + ++ A ++ G TPLH+AA G E ++LL HGA
Sbjct: 49 TPLHLAASNGHLEIVEVLLK----NGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGA 104
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 125
+ A N+G TPLHL+ Y V+ LL++ AD +A+D GKT D +S G+
Sbjct: 105 DVNAYDNDGHTPLHLAAKYG----HLEIVEVLLKHGADVNAQDKFGKTAFD-ISIDNGNE 159
Query: 126 KLRELL 131
L E+L
Sbjct: 160 DLAEIL 165
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 62/105 (59%), Gaps = 5/105 (4%)
Query: 33 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
++ A + G TPLH+AA NG E ++LL +GA + A G+TPLHL+ +
Sbjct: 39 DVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAA----TGHLE 94
Query: 93 TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137
V+ LL++ AD +A DN+G TPL HL+ G ++ E+LL H +
Sbjct: 95 IVEVLLKHGADVNAYDNDGHTPL-HLAAKYGHLEIVEVLLKHGAD 138
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
AA+ G ++ ++L+A+GA + A N+G TPLHL+ + V+ LL+ AD +A
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAA----SNGHLEIVEVLLKNGADVNAS 76
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137
D G TPL HL+ G ++ E+LL H +
Sbjct: 77 DLTGITPL-HLAAATGHLEIVEVLLKHGAD 105
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 74/126 (58%), Gaps = 9/126 (7%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPLH++A + EIV+ LL+ + ++ A + G TPLH+AA G E ++LL +GA
Sbjct: 49 TPLHLAAYWGHLEIVEVLLK----NGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGA 104
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 125
+ AK +NG+TPLHL+ V+ LL+Y AD +A+D GKT D +S G+
Sbjct: 105 DVNAKDDNGITPLHLAA----NRGHLEIVEVLLKYGADVNAQDKFGKTAFD-ISINNGNE 159
Query: 126 KLRELL 131
L E+L
Sbjct: 160 DLAEIL 165
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 58/100 (58%), Gaps = 5/100 (5%)
Query: 33 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
++ A ++ G TPLH+AA G E ++LL +GA + A G TPLHL+ +
Sbjct: 39 DVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFG----HLE 94
Query: 93 TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 132
V+ LL+ AD +AKD+ G TPL HL+ G ++ E+LL
Sbjct: 95 IVEVLLKNGADVNAKDDNGITPL-HLAANRGHLEIVEVLL 133
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
+ TPLH++A + EIV+ LL+ + ++ A++ G TPLH+AA G E ++LL
Sbjct: 79 LGSTPLHLAAHFGHLEIVEVLLK----NGADVNAKDDNGITPLHLAANRGHLEIVEVLLK 134
Query: 63 HGAFIEAKANNGMTPLHLSV 82
+GA + A+ G T +S+
Sbjct: 135 YGADVNAQDKFGKTAFDISI 154
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
AA+ G ++ ++L+A+GA + A G TPLHL+ ++ V+ LL+ AD +A
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWG----HLEIVEVLLKNGADVNAY 76
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLL 132
D G TPL HL+ G ++ E+LL
Sbjct: 77 DTLGSTPL-HLAAHFGHLEIVEVLL 100
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 65/113 (57%), Gaps = 8/113 (7%)
Query: 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
+TPLH +A EIVK L+ + ++ A++ G TPLH AAK G E KLL++
Sbjct: 37 GRTPLHYAAKEGHKEIVKLLI----SKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK 92
Query: 64 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116
GA + AK ++G TPLH Y+ + VK L+ AD + D++G+TPLD
Sbjct: 93 GADVNAKDSDGRTPLH----YAAKEGHKEIVKLLISKGADVNTSDSDGRTPLD 141
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 66/113 (58%), Gaps = 9/113 (7%)
Query: 20 VKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLH 79
VK L+E + ++ A + G TPLH AAK G E KLL++ GA + AK ++G TPLH
Sbjct: 20 VKDLIE----NGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLH 75
Query: 80 LSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 132
Y+ + VK L+ AD +AKD++G+TPL H + G ++ +LL+
Sbjct: 76 ----YAAKEGHKEIVKLLISKGADVNAKDSDGRTPL-HYAAKEGHKEIVKLLI 123
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
AA+NG + K L+ +GA + A ++G TPLH Y+ + VK L+ AD +AK
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLH----YAAKEGHKEIVKLLISKGADVNAK 66
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLL 132
D++G+TPL H + G ++ +LL+
Sbjct: 67 DSDGRTPL-HYAAKEGHKEIVKLLI 90
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
+TPLH +A EIVK L+ + ++ + G TPL +A ++G E KLL
Sbjct: 103 GRTPLHYAAKEGHKEIVKLLI----SKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
Query: 64 GAFIE 68
G ++E
Sbjct: 159 GGWLE 163
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/113 (38%), Positives = 66/113 (58%), Gaps = 8/113 (7%)
Query: 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
+TPLH +A E+VK L+ + ++ A++ G TPLH AA+NG E KLL++
Sbjct: 37 GRTPLHHAAENGHKEVVKLLI----SKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK 92
Query: 64 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116
GA + AK ++G TPLH ++ + VK L+ AD + D++G+TPLD
Sbjct: 93 GADVNAKDSDGRTPLH----HAAENGHKEVVKLLISKGADVNTSDSDGRTPLD 141
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 59/98 (60%), Gaps = 8/98 (8%)
Query: 20 VKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLH 79
VK L+E + ++ A + G TPLH AA+NG E KLL++ GA + AK ++G TPLH
Sbjct: 20 VKDLIE----NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLH 75
Query: 80 LSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 117
++ + VK L+ AD +AKD++G+TPL H
Sbjct: 76 ----HAAENGHKEVVKLLISKGADVNAKDSDGRTPLHH 109
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
AA+NG + K L+ +GA + A ++G TPLH ++ + VK L+ AD +AK
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLH----HAAENGHKEVVKLLISKGADVNAK 66
Query: 108 DNEGKTPLDH 117
D++G+TPL H
Sbjct: 67 DSDGRTPLHH 76
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
+TPLH +A E+VK L+ + ++ + G TPL +A ++G E KLL
Sbjct: 103 GRTPLHHAAENGHKEVVKLLI----SKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158
Query: 64 GAFIE 68
G ++E
Sbjct: 159 GGWLE 163
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 64/113 (56%), Gaps = 8/113 (7%)
Query: 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
+TPLH +A EIVK LL + + A++ G TPLH AA+NG E KLLL+
Sbjct: 37 GRTPLHYAAENGHKEIVKLLL----SKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 64 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116
GA AK ++G TPLH Y+ + VK LL AD + D++G+TPLD
Sbjct: 93 GADPNAKDSDGRTPLH----YAAENGHKEIVKLLLSKGADPNTSDSDGRTPLD 141
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 65/113 (57%), Gaps = 9/113 (7%)
Query: 20 VKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLH 79
VK LLE + + A + G TPLH AA+NG E KLLL+ GA AK ++G TPLH
Sbjct: 20 VKDLLE----NGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLH 75
Query: 80 LSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 132
Y+ + VK LL AD +AKD++G+TPL H + G ++ +LLL
Sbjct: 76 ----YAAENGHKEIVKLLLSKGADPNAKDSDGRTPL-HYAAENGHKEIVKLLL 123
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
AA+NG + K LL +GA A ++G TPLH Y+ + VK LL AD +AK
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLH----YAAENGHKEIVKLLLSKGADPNAK 66
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLL 132
D++G+TPL H + G ++ +LLL
Sbjct: 67 DSDGRTPL-HYAAENGHKEIVKLLL 90
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
+TPLH +A EIVK LL + + + G TPL +A ++G E KLL
Sbjct: 103 GRTPLHYAAENGHKEIVKLLL----SKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQ 158
Query: 64 GAFIE 68
G ++E
Sbjct: 159 GGWLE 163
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 76/127 (59%), Gaps = 11/127 (8%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPLH++A EIV+ LL+ +++A +++G TPLH+AA G E ++LL +GA
Sbjct: 49 TPLHLAAYSGHLEIVEVLLK----HGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGA 104
Query: 66 FIEAKANNGMTPLHLSV-WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
+ A ++GMTPLHL+ W + V+ LL++ AD +A+D GKT D +S G+
Sbjct: 105 DVNAMDSDGMTPLHLAAKWGYLE-----IVEVLLKHGADVNAQDKFGKTAFD-ISIDNGN 158
Query: 125 AKLRELL 131
L E+L
Sbjct: 159 EDLAEIL 165
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 62/105 (59%), Gaps = 5/105 (4%)
Query: 33 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
++ A + G TPLH+AA +G E ++LL HGA ++A G TPLHL+ ++
Sbjct: 39 DVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWG----HLE 94
Query: 93 TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137
V+ LL+ AD +A D++G TPL HL+ G ++ E+LL H +
Sbjct: 95 IVEVLLKNGADVNAMDSDGMTPL-HLAAKWGYLEIVEVLLKHGAD 138
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
AA+ G ++ ++L+A+GA + A N G TPLHL+ YS E V+ LL++ AD A
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAA-YSGHLE---IVEVLLKHGADVDAS 76
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLL 132
D G TPL HL+ G ++ E+LL
Sbjct: 77 DVFGYTPL-HLAAYWGHLEIVEVLL 100
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/130 (36%), Positives = 73/130 (56%), Gaps = 9/130 (6%)
Query: 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL 61
+ TPLH++A + EIV+ LL+ + ++ A + G TPLH+AA G E ++LL
Sbjct: 45 HVGWTPLHLAAYFGHLEIVEVLLK----NGADVNADDSLGVTPLHLAADRGHLEVVEVLL 100
Query: 62 AHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 121
+GA + A +NG TPLHL+ V+ LL++ AD +A+D GKT D +S
Sbjct: 101 KNGADVNANDHNGFTPLHLAANIG----HLEIVEVLLKHGADVNAQDKFGKTAFD-ISID 155
Query: 122 PGSAKLRELL 131
G+ L E+L
Sbjct: 156 NGNEDLAEIL 165
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 59/105 (56%), Gaps = 5/105 (4%)
Query: 33 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
++ A + G TPLH+AA G E ++LL +GA + A + G+TPLHL+
Sbjct: 39 DVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAA----DRGHLE 94
Query: 93 TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137
V+ LL+ AD +A D+ G TPL HL+ G ++ E+LL H +
Sbjct: 95 VVEVLLKNGADVNANDHNGFTPL-HLAANIGHLEIVEVLLKHGAD 138
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
AA+ G ++ ++L+A+GA + A + G TPLHL+ ++ V+ LL+ AD +A
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFG----HLEIVEVLLKNGADVNAD 76
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLL 132
D+ G TPL HL+ G ++ E+LL
Sbjct: 77 DSLGVTPL-HLAADRGHLEVVEVLL 100
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/92 (50%), Positives = 57/92 (61%), Gaps = 5/92 (5%)
Query: 41 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 100
G TPLH+AA+NG E KLLL GA + AK NG TPLHL+ R+ VK LLE
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA----RNGHLEVVKLLLEA 57
Query: 101 NADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 132
AD +AKD G+TPL HL+ G ++ +LLL
Sbjct: 58 GADVNAKDKNGRTPL-HLAARNGHLEVVKLLL 88
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 57/98 (58%), Gaps = 8/98 (8%)
Query: 5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
+TPLH++A E+VK LLE ++ A++ G TPLH+AA+NG E KLLL G
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 65 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA 102
A + AK NG TPLHL+ R+ VK LLE A
Sbjct: 59 ADVNAKDKNGRTPLHLAA----RNGHLEVVKLLLEAGA 92
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
+TPLH++A E+VK LLE ++ A++ G TPLH+AA+NG E KLLL G
Sbjct: 36 RTPLHLAARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Query: 65 AF 66
A+
Sbjct: 92 AY 93
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 49/128 (38%), Positives = 71/128 (55%), Gaps = 9/128 (7%)
Query: 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
TPLH++A EIV+ LL+ + ++ A + G TPLH+AAK G E ++LL +
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLK----NGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKY 102
Query: 64 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 123
GA + A G TPLHL+ + V+ LL+Y AD +A+D GKT D +S G
Sbjct: 103 GADVNADDTIGSTPLHLAA----DTGHLEIVEVLLKYGADVNAQDKFGKTAFD-ISIDNG 157
Query: 124 SAKLRELL 131
+ L E+L
Sbjct: 158 NEDLAEIL 165
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 63/105 (60%), Gaps = 5/105 (4%)
Query: 33 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
++ A++ YG+TPLH+AA+ G E ++LL +GA + A +G TPLHL+ +
Sbjct: 39 DVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAA----KRGHLE 94
Query: 93 TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137
V+ LL+Y AD +A D G TPL HL+ G ++ E+LL + +
Sbjct: 95 IVEVLLKYGADVNADDTIGSTPL-HLAADTGHLEIVEVLLKYGAD 138
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 5/90 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
AA+ G ++ ++L+A+GA + A+ G TPLHL+ R V+ LL+ AD +A
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAA----RVGHLEIVEVLLKNGADVNAL 76
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137
D G TPL HL+ G ++ E+LL + +
Sbjct: 77 DFSGSTPL-HLAAKRGHLEIVEVLLKYGAD 105
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 60
+ TPLH++A EIV+ LL++ ++ AQ+ +G+T ++ NG + A++L
Sbjct: 112 IGSTPLHLAADTGHLEIVEVLLKY----GADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 74/126 (58%), Gaps = 9/126 (7%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPLH++A + EIV+ LL+ + ++ A++ G TPLH+AA+ G E ++LL +GA
Sbjct: 49 TPLHLAAHFGHLEIVEVLLK----NGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGA 104
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 125
+ A ++G TPLHL+ + V+ LL+ AD +A+D GKT D +S G+
Sbjct: 105 DVNASDSHGFTPLHLAA----KRGHLEIVEVLLKNGADVNAQDKFGKTAFD-ISIDNGNE 159
Query: 126 KLRELL 131
L E+L
Sbjct: 160 DLAEIL 165
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 60/100 (60%), Gaps = 5/100 (5%)
Query: 33 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
++ A++ G TPLH+AA G E ++LL +GA + AK + G+TPLHL+ R
Sbjct: 39 DVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAA----RRGHLE 94
Query: 93 TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 132
V+ LL+ AD +A D+ G TPL HL+ G ++ E+LL
Sbjct: 95 IVEVLLKNGADVNASDSHGFTPL-HLAAKRGHLEIVEVLL 133
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
AA+ G ++ ++L+A+GA + A+ G TPLHL+ + V+ LL+ AD +AK
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFG----HLEIVEVLLKNGADVNAK 76
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLL 132
D+ G TPL HL+ G ++ E+LL
Sbjct: 77 DSLGVTPL-HLAARRGHLEIVEVLL 100
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 64/111 (57%), Gaps = 8/111 (7%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPLH++A EIV+ LL+ + + A++ G TPLH+AA+ G E ++LL GA
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116
+ AK +G TPLHL+ R V+ LL+ AD +A+D GKTP D
Sbjct: 93 DVNAKDKDGYTPLHLAA----REGHLEIVEVLLKAGADVNAQDKFGKTPFD 139
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 60/100 (60%), Gaps = 5/100 (5%)
Query: 33 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
++ A++ G TPLH+AA+ G E ++LL GA + AK +G TPLHL+ R
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA----REGHLE 82
Query: 93 TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 132
V+ LL+ AD +AKD +G TPL HL+ G ++ E+LL
Sbjct: 83 IVEVLLKAGADVNAKDKDGYTPL-HLAAREGHLEIVEVLL 121
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
AA+ G ++ ++L+A+GA + AK +G TPLHL+ R V+ LL+ AD +AK
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAA----REGHLEIVEVLLKAGADVNAK 64
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLL 132
D +G TPL HL+ G ++ E+LL
Sbjct: 65 DKDGYTPL-HLAAREGHLEIVEVLL 88
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 6/89 (6%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPLH++A EIV+ LL+ + + A++ G TPLH+AA+ G E ++LL GA
Sbjct: 70 TPLHLAAREGHLEIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATV 94
+ A+ G TP L++ ED A V
Sbjct: 126 DVNAQDKFGKTPFDLAIREG--HEDIAEV 152
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 72/126 (57%), Gaps = 9/126 (7%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPLH++A EIV+ LL+ ++ A++ G TPLH+AA+ G E ++LL GA
Sbjct: 37 TPLHLAAREGHLEIVEVLLKA----GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 125
+ AK +G TPLHL+ R V+ LL+ AD +A+D GKTP D L+ G+
Sbjct: 93 DVNAKDKDGYTPLHLAA----REGHLEIVEVLLKAGADVNAQDKFGKTPFD-LAIDNGNE 147
Query: 126 KLRELL 131
+ E+L
Sbjct: 148 DIAEVL 153
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 60/100 (60%), Gaps = 5/100 (5%)
Query: 33 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
++ A++ G TPLH+AA+ G E ++LL GA + AK +G TPLHL+ R
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA----REGHLE 82
Query: 93 TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 132
V+ LL+ AD +AKD +G TPL HL+ G ++ E+LL
Sbjct: 83 IVEVLLKAGADVNAKDKDGYTPL-HLAAREGHLEIVEVLL 121
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
AA+ G ++ ++L+A+GA + AK +G TPLHL+ R V+ LL+ AD +AK
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAA----REGHLEIVEVLLKAGADVNAK 64
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLL 132
D +G TPL HL+ G ++ E+LL
Sbjct: 65 DKDGYTPL-HLAAREGHLEIVEVLL 88
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 73/127 (57%), Gaps = 9/127 (7%)
Query: 5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
+TPLH++A EIV+ LL + ++ A + G TPLH+AA G E ++LL +G
Sbjct: 36 RTPLHMAAAVGHLEIVEVLLR----NGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYG 91
Query: 65 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
A + AK G+TPL+L+ ++ V+ LL++ AD +A+D GKT D +S G+
Sbjct: 92 ADVNAKDATGITPLYLAAYWG----HLEIVEVLLKHGADVNAQDKFGKTAFD-ISIDIGN 146
Query: 125 AKLRELL 131
L E+L
Sbjct: 147 EDLAEIL 153
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 58/102 (56%), Gaps = 5/102 (4%)
Query: 36 AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVK 95
A + YG TPLHMAA G E ++LL +GA + A NG TPLHL+ V+
Sbjct: 30 AYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLG----HLEIVE 85
Query: 96 TLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137
LL+Y AD +AKD G TPL +L+ G ++ E+LL H +
Sbjct: 86 VLLKYGADVNAKDATGITPL-YLAAYWGHLEIVEVLLKHGAD 126
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 5/96 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
AA+ G ++ ++L+A+GA A + G TPLH++ V+ LL AD +A
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVG----HLEIVEVLLRNGADVNAV 64
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRA 143
D G TPL HL+ G ++ E+LL + + + A
Sbjct: 65 DTNGTTPL-HLAASLGHLEIVEVLLKYGADVNAKDA 99
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 70/126 (55%), Gaps = 9/126 (7%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPLH++A Y EIV+ LL+ ++ A ++ G TPLH+AA G E ++LL HGA
Sbjct: 49 TPLHLAATYGHLEIVEVLLKH----GADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGA 104
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 125
+ A G TPLHL+ V+ LL++ AD +A+D GKT D +S G+
Sbjct: 105 DVNAVDTWGDTPLHLAAIMG----HLEIVEVLLKHGADVNAQDKFGKTAFD-ISIDNGNE 159
Query: 126 KLRELL 131
L E+L
Sbjct: 160 DLAEIL 165
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 57/105 (54%), Gaps = 5/105 (4%)
Query: 33 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
++ A + G TPLH+AA G E ++LL HGA + A G TPLHL+
Sbjct: 39 DVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIG----HLE 94
Query: 93 TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137
V+ LL++ AD +A D G TPL HL+ G ++ E+LL H +
Sbjct: 95 IVEVLLKHGADVNAVDTWGDTPL-HLAAIMGHLEIVEVLLKHGAD 138
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 5/90 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
AA+ G ++ ++L+A+GA + A +G+TPLHL+ Y V+ LL++ AD +A
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYG----HLEIVEVLLKHGADVNAI 76
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137
D G TPL HL+ G ++ E+LL H +
Sbjct: 77 DIMGSTPL-HLAALIGHLEIVEVLLKHGAD 105
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
M TPLH++A EIV+ LL+ ++ A + +G+TPLH+AA G E ++LL
Sbjct: 79 MGSTPLHLAALIGHLEIVEVLLKH----GADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 63 HGAFIEAKANNGMTPLHLSV 82
HGA + A+ G T +S+
Sbjct: 135 HGADVNAQDKFGKTAFDISI 154
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 70/126 (55%), Gaps = 9/126 (7%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPLH++A Y EIV+ LL+ ++ A ++ G TPLH+AA G E ++LL HGA
Sbjct: 49 TPLHLAATYGHLEIVEVLLKH----GADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGA 104
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 125
+ A G TPLHL+ V+ LL++ AD +A+D GKT D +S G+
Sbjct: 105 DVNAVDTWGDTPLHLAAIMG----HLEIVEVLLKHGADVNAQDKFGKTAFD-ISIDNGNE 159
Query: 126 KLRELL 131
L E+L
Sbjct: 160 DLAEIL 165
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 57/105 (54%), Gaps = 5/105 (4%)
Query: 33 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
++ A + G TPLH+AA G E ++LL HGA + A G TPLHL+
Sbjct: 39 DVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIG----HLE 94
Query: 93 TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137
V+ LL++ AD +A D G TPL HL+ G ++ E+LL H +
Sbjct: 95 IVEVLLKHGADVNAVDTWGDTPL-HLAAIMGHLEIVEVLLKHGAD 138
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 5/90 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
AA+ G ++ ++L+A+GA + A +G+TPLHL+ Y V+ LL++ AD +A
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYG----HLEIVEVLLKHGADVNAI 76
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137
D G TPL HL+ G ++ E+LL H +
Sbjct: 77 DIXGSTPL-HLAALIGHLEIVEVLLKHGAD 105
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 71/126 (56%), Gaps = 9/126 (7%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPLH++A EIV+ LL+ ++ A++ G TPLH+AA+ G E ++LL GA
Sbjct: 49 TPLHLAAREGHLEIVEVLLKAG----ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 104
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 125
+ AK +G TPLHL+ R V+ LL+ AD +A+D GKT D +S G+
Sbjct: 105 DVNAKDKDGYTPLHLAA----REGHLEIVEVLLKAGADVNAQDKFGKTAFD-ISIDNGNE 159
Query: 126 KLRELL 131
L E+L
Sbjct: 160 DLAEIL 165
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 60/100 (60%), Gaps = 5/100 (5%)
Query: 33 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
++ A++ G TPLH+AA+ G E ++LL GA + AK +G TPLHL+ R
Sbjct: 39 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA----REGHLE 94
Query: 93 TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 132
V+ LL+ AD +AKD +G TPL HL+ G ++ E+LL
Sbjct: 95 IVEVLLKAGADVNAKDKDGYTPL-HLAAREGHLEIVEVLL 133
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
AA+ G ++ ++L+A+GA + AK +G TPLHL+ R V+ LL+ AD +AK
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAA----REGHLEIVEVLLKAGADVNAK 76
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLL 132
D +G TPL HL+ G ++ E+LL
Sbjct: 77 DKDGYTPL-HLAAREGHLEIVEVLL 100
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 72/128 (56%), Gaps = 9/128 (7%)
Query: 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
TPLH++A EIV+ LL+ ++ A++ G TPLH+AA NG E ++LL +
Sbjct: 47 GSTPLHLAAWIGHPEIVEVLLK----HGADVNARDTDGWTPLHLAADNGHLEIVEVLLKY 102
Query: 64 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 123
GA + A+ G+TPLHL+ V+ LL++ AD +A+D GKT D +S G
Sbjct: 103 GADVNAQDAYGLTPLHLAA----DRGHLEIVEVLLKHGADVNAQDKFGKTAFD-ISIDNG 157
Query: 124 SAKLRELL 131
+ L E+L
Sbjct: 158 NEDLAEIL 165
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 61/105 (58%), Gaps = 5/105 (4%)
Query: 33 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
++ A + G TPLH+AA G E ++LL HGA + A+ +G TPLHL+ +
Sbjct: 39 DVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAA----DNGHLE 94
Query: 93 TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137
V+ LL+Y AD +A+D G TPL HL+ G ++ E+LL H +
Sbjct: 95 IVEVLLKYGADVNAQDAYGLTPL-HLAADRGHLEIVEVLLKHGAD 138
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
AA+ G ++ ++L+A+GA + A + G TPLHL+ W V+ LL++ AD +A+
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPE----IVEVLLKHGADVNAR 76
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLL 132
D +G TPL HL+ G ++ E+LL
Sbjct: 77 DTDGWTPL-HLAADNGHLEIVEVLL 100
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 63/111 (56%), Gaps = 8/111 (7%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPLH++A EIV+ LL+ +++A ++YG TPLH+AA G E ++LL +GA
Sbjct: 49 TPLHLAAVSGHLEIVEVLLKH----GADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGA 104
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116
+ A G TPLHL+ V+ LL+Y AD +A+D GKT D
Sbjct: 105 DVNAFDMTGSTPLHLAA----DEGHLEIVEVLLKYGADVNAQDKFGKTAFD 151
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 60/105 (57%), Gaps = 5/105 (4%)
Query: 33 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
++ A + G TPLH+AA +G E ++LL HGA ++A G TPLHL+ +
Sbjct: 39 DVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAM----TGHLE 94
Query: 93 TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137
V+ LL+Y AD +A D G TPL HL+ G ++ E+LL + +
Sbjct: 95 IVEVLLKYGADVNAFDMTGSTPL-HLAADEGHLEIVEVLLKYGAD 138
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
AA+ G ++ ++L+A+GA + A N G+TPLHL+ S V+ LL++ AD A
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAV----SGHLEIVEVLLKHGADVDAA 76
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137
D G TPL HL+ G ++ E+LL + +
Sbjct: 77 DVYGFTPL-HLAAMTGHLEIVEVLLKYGAD 105
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAK 58
TPLH++A EIV+ LL++ ++ AQ+ +G+T ++ NG + AK
Sbjct: 114 STPLHLAADEGHLEIVEVLLKY----GADVNAQDKFGKTAFDISIDNGNEDLAK 163
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 70/126 (55%), Gaps = 9/126 (7%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPLH++A + EIV+ LL+ + ++ A + G TPLH+AA +G E ++LL HGA
Sbjct: 41 TPLHLAAANGQLEIVEVLLK----NGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGA 96
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 125
+ A G TPLHL+ S V+ LL++ AD +A+D G T D +S G
Sbjct: 97 DVNAYDRAGWTPLHLAAL----SGQLEIVEVLLKHGADVNAQDALGLTAFD-ISINQGQE 151
Query: 126 KLRELL 131
L E+L
Sbjct: 152 DLAEIL 157
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Query: 33 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
++ A + G TPLH+AA NG E ++LL +GA + A + G+TPLHL+ +
Sbjct: 31 DVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAY----DGHLE 86
Query: 93 TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRAL 144
V+ LL++ AD +A D G TPL HL+ G ++ E+LL H + + AL
Sbjct: 87 IVEVLLKHGADVNAYDRAGWTPL-HLAALSGQLEIVEVLLKHGADVNAQDAL 137
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 53/90 (58%), Gaps = 5/90 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
AA G ++ ++L+A+GA + A +NG+TPLHL+ + V+ LL+ AD +A
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAA----ANGQLEIVEVLLKNGADVNAS 68
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137
D+ G TPL HL+ G ++ E+LL H +
Sbjct: 69 DSAGITPL-HLAAYDGHLEIVEVLLKHGAD 97
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPLH +AGYN+ +V+ LL+ ++ A++ G PLH A G E A+LL+ HGA
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQH----GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 103
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 121
+ TPLH + Y K LL++ AD + K+ +G TPLD + +G
Sbjct: 104 VVNVADLWKFTPLH----EAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG 155
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 43 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA 102
TPLH AA + LL HGA + AK G+ PLH + Y Y + L+++ A
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYG----HYEVAELLVKHGA 103
Query: 103 DCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 141
+ D TPL H + G ++ +LLL H + K+
Sbjct: 104 VVNVADLWKFTPL-HEAAAKGKYEICKLLLQHGADPTKK 141
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPLH +AGYN+ +V+ LL+ ++ A++ G PLH A G E A+LL+ HGA
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQH----GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 99
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 121
+ TPLH + Y K LL++ AD + K+ +G TPLD + +G
Sbjct: 100 VVNVADLWKFTPLH----EAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG 151
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 43 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA 102
TPLH AA + LL HGA + AK G+ PLH + Y Y + L+++ A
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYG----HYEVAELLVKHGA 99
Query: 103 DCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 141
+ D TPL H + G ++ +LLL H + K+
Sbjct: 100 VVNVADLWKFTPL-HEAAAKGKYEICKLLLQHGADPTKK 137
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 9/127 (7%)
Query: 5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
+TPLH++A EIV+ LL+ ++ A + G+TPLH+AA G E ++LL +G
Sbjct: 48 KTPLHLAAIKGHLEIVEVLLKHG----ADVNAADKMGDTPLHLAALYGHLEIVEVLLKNG 103
Query: 65 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
A + A G TPLHL+ + V+ LL+Y AD +A+D GKT D +S G+
Sbjct: 104 ADVNATDTYGFTPLHLAA----DAGHLEIVEVLLKYGADVNAQDKFGKTAFD-ISIDNGN 158
Query: 125 AKLRELL 131
L E+L
Sbjct: 159 EDLAEIL 165
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 59/105 (56%), Gaps = 5/105 (4%)
Query: 33 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
++ A++ G+TPLH+AA G E ++LL HGA + A G TPLHL+ Y
Sbjct: 39 DVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYG----HLE 94
Query: 93 TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137
V+ LL+ AD +A D G TPL HL+ G ++ E+LL + +
Sbjct: 95 IVEVLLKNGADVNATDTYGFTPL-HLAADAGHLEIVEVLLKYGAD 138
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL 61
+M TPLH++A Y EIV+ LL+ + ++ A + YG TPLH+AA G E ++LL
Sbjct: 78 KMGDTPLHLAALYGHLEIVEVLLK----NGADVNATDTYGFTPLHLAADAGHLEIVEVLL 133
Query: 62 AHGAFIEAKANNGMTPLHLSV 82
+GA + A+ G T +S+
Sbjct: 134 KYGADVNAQDKFGKTAFDISI 154
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 5/85 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
AA+ G ++ ++L+A+GA + A+ ++G TPLHL+ +I+ V+ LL++ AD +A
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLA---AIKGH-LEIVEVLLKHGADVNAA 76
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLL 132
D G TPL HL+ G ++ E+LL
Sbjct: 77 DKMGDTPL-HLAALYGHLEIVEVLL 100
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 62/116 (53%), Gaps = 8/116 (6%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPLH +AGYN+ +V+ LL+ ++ A++ G PLH A G E A+LL+ HGA
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQH----GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 101
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 121
+ TPLH + Y K LL++ AD + K+ +G TPLD + +G
Sbjct: 102 VVNVADLWKFTPLH----EAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG 153
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 5/99 (5%)
Query: 43 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA 102
TPLH AA + LL HGA + AK G+ PLH + Y Y + L+++ A
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYG----HYEVAELLVKHGA 101
Query: 103 DCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 141
+ D TPL H + G ++ +LLL H + K+
Sbjct: 102 VVNVADLWKFTPL-HEAAAKGKYEICKLLLQHGADPTKK 139
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/156 (32%), Positives = 73/156 (46%), Gaps = 34/156 (21%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVE---------LEAQ------------------- 37
TPLH++A N+ E+ +SLL++ G+ E L AQ
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL 273
Query: 38 -NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKT 96
N G TPLH+ A+ G A +L+ HG ++A G TPLH++ Y + VK
Sbjct: 274 GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYG----NIKLVKF 329
Query: 97 LLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 132
LL++ AD +AK G +PL H + G + LLL
Sbjct: 330 LLQHQADVNAKTKLGYSPL-HQAAQQGHTDIVTLLL 364
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 59/110 (53%), Gaps = 8/110 (7%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPLHV++ IVK+LL+ + V N+ ETPLHMAA+ G E AK LL + A
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVS----NVKVETPLHMAARAGHTEVAKYLLQNKA 71
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
+ AKA + TPLH + R VK LLE NA+ + G TPL
Sbjct: 72 KVNAKAKDDQTPLHCAA----RIGHTNMVKLLLENNANPNLATTAGHTPL 117
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 67/130 (51%), Gaps = 11/130 (8%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPLHV+ +N +IVK LL G+ + G TPLH+AAK E A+ LL +G
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPRGGSP----HSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 236
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYA-TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
A++ G+TPLHL+ E +A V LL A+ + + G TPL HL G
Sbjct: 237 SANAESVQGVTPLHLAA-----QEGHAEMVALLLSKQANGNLGNKSGLTPL-HLVAQEGH 290
Query: 125 AKLRELLLWH 134
+ ++L+ H
Sbjct: 291 VPVADVLIKH 300
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 65/128 (50%), Gaps = 9/128 (7%)
Query: 5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
+TPLH++A E+ K LL+ +K ++ A+ +TPLH AA+ G KLLL +
Sbjct: 48 ETPLHMAARAGHTEVAKYLLQ----NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENN 103
Query: 65 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124
A G TPLH++ R TV LLE A + +G TPL H++ G
Sbjct: 104 ANPNLATTAGHTPLHIAA----REGHVETVLALLEKEASQACMTKKGFTPL-HVAAKYGK 158
Query: 125 AKLRELLL 132
++ ELLL
Sbjct: 159 VRVAELLL 166
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 68/157 (43%), Gaps = 34/157 (21%)
Query: 5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
TPLH++A E V +LLE + G TPLH+AAK G A+LLL
Sbjct: 114 HTPLHIAAREGHVETVLALLE----KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD 169
Query: 65 AFIEAKANNGMTPLHLSVWY-----------------------------SIRSEDYATVK 95
A A NG+TPLH++V + + + +
Sbjct: 170 AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVAR 229
Query: 96 TLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 132
+LL+Y +A+ +G TPL HL+ G A++ LLL
Sbjct: 230 SLLQYGGSANAESVQGVTPL-HLAAQEGHAEMVALLL 265
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
QTPLH +A +VK LLE N + A G TPLH+AA+ G E LL
Sbjct: 81 QTPLHCAARIGHTNMVKLLLENNANPNLATTA----GHTPLHIAAREGHVETVLALLEKE 136
Query: 65 AFIEAKANNGMTPLHLSVWYS-IRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
A G TPLH++ Y +R + LLE +A +A G TPL
Sbjct: 137 ASQACMTKKGFTPLHVAAKYGKVR-----VAELLLERDAHPNAAGKNGLTPL 183
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL 61
+M TPLHV++ Y ++VK LL+ + ++ A+ G +PLH AA+ G + LLL
Sbjct: 309 RMGYTPLHVASHYGNIKLVKFLLQH----QADVNAKTKLGYSPLHQAAQQGHTDIVTLLL 364
Query: 62 AHGAFIEAKANNGMTPL 78
+GA +++G TPL
Sbjct: 365 KNGASPNEVSSDGTTPL 381
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 70/128 (54%), Gaps = 13/128 (10%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPLH+ EI++ LL++ ++ A + G TPLH+AA G E ++LL +GA
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYA----ADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGA 104
Query: 66 FIEAKANNGMTPLHLSVWYSIRSED--YATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 123
+ A G TPLHL+ +ED V+ LL+Y AD +A+D GKT D +S G
Sbjct: 105 DVNAMDYQGYTPLHLA------AEDGHLEIVEVLLKYGADVNAQDKFGKTAFD-ISIDNG 157
Query: 124 SAKLRELL 131
+ L E+L
Sbjct: 158 NEDLAEIL 165
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 57/100 (57%), Gaps = 5/100 (5%)
Query: 33 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
++ A + +G TPLH+ NG E ++LL + A + A +G TPLHL+ +
Sbjct: 39 DVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRG----HLE 94
Query: 93 TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 132
V+ LL+Y AD +A D +G TPL HL+ G ++ E+LL
Sbjct: 95 IVEVLLKYGADVNAMDYQGYTPL-HLAAEDGHLEIVEVLL 133
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 5/85 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
AA+ G ++ ++L+A+GA + A G+TPLHL V + ++ LL+Y AD +A
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVV----NNGHLEIIEVLLKYAADVNAS 76
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLL 132
D G TPL HL+ G ++ E+LL
Sbjct: 77 DKSGWTPL-HLAAYRGHLEIVEVLL 100
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 59/99 (59%), Gaps = 5/99 (5%)
Query: 33 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
++ A + +G TPLH+AA G E ++LL +GA + A N G TPLHL+ W ++
Sbjct: 39 DVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAW----ADHLE 94
Query: 93 TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELL 131
V+ LL++ AD +A+D GKT D +S G+ L E+L
Sbjct: 95 IVEVLLKHGADVNAQDKFGKTAFD-ISIDNGNEDLAEIL 132
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
TPLH++A EIV+ LL+ + ++ A G TPLH+AA E ++LL H
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLK----NGADVNATGNTGRTPLHLAAWADHLEIVEVLLKH 102
Query: 64 GAFIEAKANNGMTPLHLSV 82
GA + A+ G T +S+
Sbjct: 103 GADVNAQDKFGKTAFDISI 121
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
AA+ G ++ ++L A+GA + A G TPLHL+ V+ LL+ AD +A
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLG----HLEIVEVLLKNGADVNAT 76
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137
N G+TPL HL+ ++ E+LL H +
Sbjct: 77 GNTGRTPL-HLAAWADHLEIVEVLLKHGAD 105
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 60
+TPLH++A + EIV+ LL+ ++ AQ+ +G+T ++ NG + A++L
Sbjct: 80 GRTPLHLAAWADHLEIVEVLLK----HGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Query: 33 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
++ A + G TPLH+AAK G E ++LL HGA + A + G TPLHL+
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVG----HLE 94
Query: 93 TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELL 131
V+ LLEY AD +A+D GKT D +S G+ L E+L
Sbjct: 95 IVEVLLEYGADVNAQDKFGKTAFD-ISIDNGNEDLAEIL 132
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
A + G ++ ++L+A+GA + A + G+TPLHL+ + V+ LL++ AD +A
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAA----KRGHLEIVEVLLKHGADVNAS 76
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLL 132
D+ G+TPL HL+ G ++ E+LL
Sbjct: 77 DSWGRTPL-HLAATVGHLEIVEVLL 100
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPLH++A EIV+ LL+ ++ A + +G TPLH+AA G E ++LL +GA
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHG----ADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGA 104
Query: 66 FIEAKANNGMTPLHLSV 82
+ A+ G T +S+
Sbjct: 105 DVNAQDKFGKTAFDISI 121
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 60
+TPLH++A EIV+ LLE+ ++ AQ+ +G+T ++ NG + A++L
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYG----ADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Query: 33 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
++ A + G TPLH+AAK G E ++LL HGA + A+ G TPLHL+
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVG----HLE 94
Query: 93 TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELL 131
V+ LLEY AD +A+D GKT D +S G+ L E+L
Sbjct: 95 IVEVLLEYGADVNAQDKFGKTAFD-ISIDNGNEDLAEIL 132
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 52/85 (61%), Gaps = 5/85 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
A + G ++ ++L+A+GA + A + G+TPLHL+ + V+ LL++ AD +A+
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAA----KRGHLEIVEVLLKHGADVNAR 76
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLL 132
D G+TPL HL+ G ++ E+LL
Sbjct: 77 DIWGRTPL-HLAATVGHLEIVEVLL 100
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPLH++A EIV+ LL+ ++ A++++G TPLH+AA G E ++LL +GA
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHG----ADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGA 104
Query: 66 FIEAKANNGMTPLHLSV 82
+ A+ G T +S+
Sbjct: 105 DVNAQDKFGKTAFDISI 121
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 60
+TPLH++A EIV+ LLE+ ++ AQ+ +G+T ++ NG + A++L
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYG----ADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/99 (41%), Positives = 55/99 (55%), Gaps = 5/99 (5%)
Query: 33 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
++ A + G TPLH+AAK G E ++LL HGA + A G TPLHL+
Sbjct: 39 DVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVG----HLE 94
Query: 93 TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELL 131
V+ LLEY AD +A+D GKT D +S G+ L E+L
Sbjct: 95 IVEVLLEYGADVNAQDKFGKTAFD-ISIDNGNEDLAEIL 132
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
A + G ++ ++L+A+GA + A + G+TPLHL+ + V+ LL++ AD +A
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAA----KRGHLEIVEVLLKHGADVNAS 76
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLL 132
D G+TPL HL+ G ++ E+LL
Sbjct: 77 DIWGRTPL-HLAATVGHLEIVEVLL 100
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPLH++A EIV+ LL+ ++ A +++G TPLH+AA G E ++LL +GA
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHG----ADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGA 104
Query: 66 FIEAKANNGMTPLHLSV 82
+ A+ G T +S+
Sbjct: 105 DVNAQDKFGKTAFDISI 121
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 60
+TPLH++A EIV+ LLE+ ++ AQ+ +G+T ++ NG + A++L
Sbjct: 80 GRTPLHLAATVGHLEIVEVLLEYG----ADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 58/104 (55%), Gaps = 8/104 (7%)
Query: 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
TPLH +A AE VK LL ++ A++ G TPLH+AAKNG E KLLLA
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLS----KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 64 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
GA + A++ +G TP HL+ ++ + VK L AD +A+
Sbjct: 65 GADVNARSKDGNTPEHLAK----KNGHHEIVKLLDAKGADVNAR 104
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 54/91 (59%), Gaps = 5/91 (5%)
Query: 41 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 100
G TPLH AAKNG E K LL+ GA + A++ +G TPLHL+ ++ VK LL
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAA----KNGHAEIVKLLLAK 64
Query: 101 NADCSAKDNEGKTPLDHLSNGPGSAKLRELL 131
AD +A+ +G TP +HL+ G ++ +LL
Sbjct: 65 GADVNARSKDGNTP-EHLAKKNGHHEIVKLL 94
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
TPLH++A AEIVK LL ++ A++ G TP H+A KNG +E KLL A
Sbjct: 42 GNTPLHLAAKNGHAEIVKLLLA----KGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAK 97
Query: 64 GAFIEAKA 71
GA + A++
Sbjct: 98 GADVNARS 105
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Query: 33 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
++ A + G TPLH+AA E ++LL HGA + A N+G TPLHL+ +
Sbjct: 39 DVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFG----HLE 94
Query: 93 TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELL 131
V+ LL++ AD +A+D GKT D +S G+ L E+L
Sbjct: 95 IVEVLLKHGADVNAQDKFGKTAFD-ISIDNGNEDLAEIL 132
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 5/90 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
AA+ G ++ ++L+A+GA + A G TPLHL+ Y + V+ LL++ AD +A
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADY----DHLEIVEVLLKHGADVNAH 76
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137
DN+G TPL HL+ G ++ E+LL H +
Sbjct: 77 DNDGSTPL-HLAALFGHLEIVEVLLKHGAD 105
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Query: 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
TPLH++A Y+ EIV+ LL+ ++ A + G TPLH+AA G E ++LL H
Sbjct: 47 GNTPLHLAADYDHLEIVEVLLKHG----ADVNAHDNDGSTPLHLAALFGHLEIVEVLLKH 102
Query: 64 GAFIEAKANNGMTPLHLSVWYSIRSEDYATV 94
GA + A+ G T +S+ +ED A +
Sbjct: 103 GADVNAQDKFGKTAFDISIDNG--NEDLAEI 131
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 59/100 (59%), Gaps = 5/100 (5%)
Query: 33 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
++ A++ G TPLH+AA NG E ++LL +GA + A + GMTPL L+ +
Sbjct: 39 DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG----HLE 94
Query: 93 TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 132
V+ LL+ AD +A D EG TPL HL+ G ++ E+LL
Sbjct: 95 IVEVLLKNGADVNANDMEGHTPL-HLAAMFGHLEIVEVLL 133
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 68/126 (53%), Gaps = 9/126 (7%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPLH++A EIV+ LL+ + ++ A + G TPL +AA G E ++LL +GA
Sbjct: 49 TPLHLAAFNGHLEIVEVLLK----NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGA 104
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 125
+ A G TPLHL+ + V+ LL+ AD +A+D GKT D +S G+
Sbjct: 105 DVNANDMEGHTPLHLAAMFG----HLEIVEVLLKNGADVNAQDKFGKTAFD-ISIDNGNE 159
Query: 126 KLRELL 131
L E+L
Sbjct: 160 DLAEIL 165
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
AA+ G ++ ++L+A+GA + A+ +G TPLHL+ + V+ LL+ AD +A
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNG----HLEIVEVLLKNGADVNAV 76
Query: 108 DNEGKTPL 115
D+ G TPL
Sbjct: 77 DHAGMTPL 84
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 13/135 (9%)
Query: 2 QMAQTPLHVSAGYNKAEIVKSLLEW--PGNDKVELEAQNMYGETPLHMAAKNGCNEAAKL 59
Q ++T LH + EIV+ LL+ P NDK + G +PLH+AA G +E K
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD------AGWSPLHIAASAGXDEIVKA 91
Query: 60 LLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS 119
LL GA + A NG TPLH Y+ + LLE A+ AKD+ T + H +
Sbjct: 92 LLVKGAHVNAVNQNGCTPLH----YAASKNRHEIAVMLLEGGANPDAKDHYDATAM-HRA 146
Query: 120 NGPGSAKLRELLLWH 134
G+ K+ +LL++
Sbjct: 147 AAKGNLKMVHILLFY 161
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL 61
Q TPLH +A N+ EI LLE N +A++ Y T +H AA G + +LL
Sbjct: 104 QNGCTPLHYAASKNRHEIAVMLLEGGANP----DAKDHYDATAMHRAAAKGNLKMVHILL 159
Query: 62 AHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 121
+ A + G TPLHL+ E K L+ A ++ E KTPL G
Sbjct: 160 FYKASTNIQDTEGNTPLHLAC----DEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGG 215
Query: 122 PG 123
G
Sbjct: 216 LG 217
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 13/135 (9%)
Query: 2 QMAQTPLHVSAGYNKAEIVKSLLEW--PGNDKVELEAQNMYGETPLHMAAKNGCNEAAKL 59
Q ++T LH + EIV+ LL+ P NDK + G +PLH+AA G +E K
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD------AGWSPLHIAASAGRDEIVKA 91
Query: 60 LLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS 119
LL GA + A NG TPLH Y+ + LLE A+ AKD+ T + H +
Sbjct: 92 LLVKGAHVNAVNQNGCTPLH----YAASKNRHEIAVMLLEGGANPDAKDHYDATAM-HRA 146
Query: 120 NGPGSAKLRELLLWH 134
G+ K+ +LL++
Sbjct: 147 AAKGNLKMVHILLFY 161
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL 61
Q TPLH +A N+ EI LLE N +A++ Y T +H AA G + +LL
Sbjct: 104 QNGCTPLHYAASKNRHEIAVMLLEGGANP----DAKDHYDATAMHRAAAKGNLKMVHILL 159
Query: 62 AHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 121
+ A + G TPLHL+ E K L+ A ++ E KTPL G
Sbjct: 160 FYKASTNIQDTEGNTPLHLAC----DEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGG 215
Query: 122 PG 123
G
Sbjct: 216 LG 217
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 57/91 (62%), Gaps = 5/91 (5%)
Query: 41 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 100
G TPLH+AA+ G E ++LL +GA + A+ N G+TPLHL+ +IR V+ LL++
Sbjct: 47 GLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLA---AIRGH-LEIVEVLLKH 102
Query: 101 NADCSAKDNEGKTPLDHLSNGPGSAKLRELL 131
AD +A+D GKT D +S G+ L E+L
Sbjct: 103 GADVNAQDKFGKTAFD-ISIDNGNEDLAEIL 132
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 5/90 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
AA+ G ++ ++L+A+GA + A +G+TPLHL+ V+ LL+Y AD +A+
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLG----HLEIVEVLLKYGADVNAE 76
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137
DN G TPL HL+ G ++ E+LL H +
Sbjct: 77 DNFGITPL-HLAAIRGHLEIVEVLLKHGAD 105
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPLH++A EIV+ LL++ ++ A++ +G TPLH+AA G E ++LL HGA
Sbjct: 49 TPLHLAAQLGHLEIVEVLLKYG----ADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGA 104
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATV 94
+ A+ G T +S+ +ED A +
Sbjct: 105 DVNAQDKFGKTAFDISIDNG--NEDLAEI 131
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 13/135 (9%)
Query: 2 QMAQTPLHVSAGYNKAEIVKSLLEW--PGNDKVELEAQNMYGETPLHMAAKNGCNEAAKL 59
Q ++T LH + EIV+ LL+ P NDK + G +PLH+AA G +E K
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA------GWSPLHIAASAGRDEIVKA 91
Query: 60 LLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS 119
LL GA + A NG TPLH Y+ + LLE A+ AKD+ T + H +
Sbjct: 92 LLGKGAQVNAVNQNGCTPLH----YAASKNRHEIAVMLLEGGANPDAKDHYEATAM-HRA 146
Query: 120 NGPGSAKLRELLLWH 134
G+ K+ +LL++
Sbjct: 147 AAKGNLKMIHILLYY 161
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL 61
Q TPLH +A N+ EI LLE N +A++ Y T +H AA G + +LL
Sbjct: 104 QNGCTPLHYAASKNRHEIAVMLLEGGANP----DAKDHYEATAMHRAAAKGNLKMIHILL 159
Query: 62 AHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 121
+ A + G TPLHL+ E K L+ A ++ E KTPL G
Sbjct: 160 YYKASTNIQDTEGNTPLHLAC----DEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGG 215
Query: 122 PG 123
G
Sbjct: 216 LG 217
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 13/135 (9%)
Query: 2 QMAQTPLHVSAGYNKAEIVKSLLEW--PGNDKVELEAQNMYGETPLHMAAKNGCNEAAKL 59
Q ++T LH + EIV+ LL+ P NDK + G +PLH+AA G +E K
Sbjct: 39 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA------GWSPLHIAASAGRDEIVKA 92
Query: 60 LLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS 119
LL GA + A NG TPLH Y+ + LLE A+ AKD+ T + H +
Sbjct: 93 LLGKGAQVNAVNQNGCTPLH----YAASKNRHEIAVMLLEGGANPDAKDHYEATAM-HRA 147
Query: 120 NGPGSAKLRELLLWH 134
G+ K+ +LL++
Sbjct: 148 AAKGNLKMIHILLYY 162
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL 61
Q TPLH +A N+ EI LLE N +A++ Y T +H AA G + +LL
Sbjct: 105 QNGCTPLHYAASKNRHEIAVMLLEGGANP----DAKDHYEATAMHRAAAKGNLKMIHILL 160
Query: 62 AHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 121
+ A + G TPLHL+ E K L+ A ++ E KTPL G
Sbjct: 161 YYKASTNIQDTEGNTPLHLAC----DEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGG 216
Query: 122 PG 123
G
Sbjct: 217 LG 218
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 33 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
++ A++ YG TPL++A +G E ++LL +GA + A G TPLHL+ +
Sbjct: 39 DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG----HLE 94
Query: 93 TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELL 131
+ LL++ AD +A+D GKT D +S G G+ L E+L
Sbjct: 95 IAEVLLKHGADVNAQDKFGKTAFD-ISIGNGNEDLAEIL 132
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 5/90 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
AA+ G ++ ++L+A+GA + AK G+TPL+L+ + V+ LL+ AD +A
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHG----HLEIVEVLLKNGADVNAV 76
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137
D G TPL HL+ G ++ E+LL H +
Sbjct: 77 DAIGFTPL-HLAAFIGHLEIAEVLLKHGAD 105
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPL+++ + EIV+ LL+ + ++ A + G TPLH+AA G E A++LL HGA
Sbjct: 49 TPLYLATAHGHLEIVEVLLK----NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGA 104
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATV 94
+ A+ G T +S+ +ED A +
Sbjct: 105 DVNAQDKFGKTAFDISIGNG--NEDLAEI 131
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 5/99 (5%)
Query: 33 ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYA 92
++ A++ G TPLH+AA N E ++LL +GA + A G TPLHL Y
Sbjct: 39 DVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYG----HLE 94
Query: 93 TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELL 131
V+ LL++ AD +A+D GKT D +S G+ L E+L
Sbjct: 95 IVEVLLKHGADVNAQDKFGKTAFD-ISIDNGNEDLAEIL 132
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 53/90 (58%), Gaps = 5/90 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
AA+ G ++ ++L+A+GA + A+ G+TPLHL+ ++ V+ LL+ AD +A
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAM----NDHLEIVEVLLKNGADVNAI 76
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137
D G+TPL HL G ++ E+LL H +
Sbjct: 77 DAIGETPL-HLVAMYGHLEIVEVLLKHGAD 105
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPLH++A + EIV+ LL+ + ++ A + GETPLH+ A G E ++LL HGA
Sbjct: 49 TPLHLAAMNDHLEIVEVLLK----NGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGA 104
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATV 94
+ A+ G T +S+ +ED A +
Sbjct: 105 DVNAQDKFGKTAFDISIDNG--NEDLAEI 131
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 60
+ +TPLH+ A Y EIV+ LL+ ++ AQ+ +G+T ++ NG + A++L
Sbjct: 79 IGETPLHLVAMYGHLEIVEVLLKHG----ADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 73/142 (51%), Gaps = 16/142 (11%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPLH++AGYN+ IV+ LL+ G D + A++ G PLH A G E +LLL HGA
Sbjct: 60 TPLHLAAGYNRVRIVQLLLQH-GAD---VHAKDKGGLVPLHNACSYGHYEVTELLLKHGA 115
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 125
+ A TPLH + + R E LL + AD + + GK+ +D ++ P
Sbjct: 116 CVNAMDLWQFTPLHEAASKN-RVE---VCSLLLSHGADPTLVNCHGKSAVD-MAPTP--- 167
Query: 126 KLRELLLW----HSEEQRKRRA 143
+LRE L + HS Q R A
Sbjct: 168 ELRERLTYEFKGHSLLQAAREA 189
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 32 VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDY 91
V A + TPLH+AA +LLL HGA + AK G+ PLH + Y Y
Sbjct: 49 VNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYG----HY 104
Query: 92 ATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
+ LL++ A +A D TPL H + ++ LLL H
Sbjct: 105 EVTELLLKHGACVNAMDLWQFTPL-HEAASKNRVEVCSLLLSH 146
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 2 QMAQTPLH--VSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKL 59
Q +T LH V++ + K + V LL G + E M TPLH+AA+ N+ ++
Sbjct: 209 QSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFM---TPLHVAAERAHNDVMEV 265
Query: 60 LLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKT 113
L HGA + A + G T LH + + T + LL Y +D S +G T
Sbjct: 266 LHKHGAKMNALDSLGQTALHRAAL----AGHLQTCRLLLSYGSDPSIISLQGFT 315
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 15/161 (9%)
Query: 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL 61
Q +PLHV+A + +A+++ LL+ N A+N PLH+A + G + K LL
Sbjct: 84 QDGSSPLHVAALHGRADLIPLLLKHGANAG----ARNADQAVPLHLACQQGHFQVVKCLL 139
Query: 62 AHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 121
A K +G TPL Y+ + V LL++ A +A +N+G T L H +
Sbjct: 140 DSNAKPNKKDLSGNTPL----IYACSGGHHELVALLLQHGASINASNNKGNTAL-HEAVI 194
Query: 122 PGSAKLRELLLWHSEE-----QRKRRALEACSETKAKMDEL 157
+ ELLL H +R+R A++ C+E +K+ EL
Sbjct: 195 EKHVFVVELLLLHGASVQVLNKRQRTAVD-CAEQNSKIMEL 234
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 65/120 (54%), Gaps = 6/120 (5%)
Query: 5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
QT H++ + +++LL+ ++LEA+N G T LH+A C E +LLL G
Sbjct: 80 QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERG 139
Query: 65 AFIEA-KANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 123
A I+A +G +PL +++ + + V+ LL++ A+ +A+ G + L H ++G G
Sbjct: 140 ADIDAVDIKSGRSPL----IHAVENNSLSMVQLLLQHGANVNAQMYSGSSAL-HSASGRG 194
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 64/167 (38%), Gaps = 43/167 (25%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPLH++ V L+ EL+ N +TPLH+A +LL+ GA
Sbjct: 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA 70
Query: 66 F-------------------------------------IEAKANNGMTPLHLSVWYSIRS 88
+EA+ +G+T LH++V +
Sbjct: 71 SPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV----NT 126
Query: 89 EDYATVKTLLEYNADCSAKD-NEGKTPLDHLSNGPGSAKLRELLLWH 134
E TV+ LLE AD A D G++PL H S + +LLL H
Sbjct: 127 ECQETVQLLLERGADIDAVDIKSGRSPLIHAVEN-NSLSMVQLLLQH 172
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 41 GETPLHMAAKNG----CNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKT 96
G+TPLH+A G + L G ++ N TPLHL+V ++ S V+
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRL 64
Query: 97 LLEYNADCSAKDNEGKT 113
L+ A A D G+T
Sbjct: 65 LVTAGASPMALDRHGQT 81
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 5/84 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
AA+ G ++ ++L+A+GA + AK NG TPLHL+ R+ VK LLE AD +A+
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAA----RNGHLEVVKLLLEAGADVNAQ 68
Query: 108 DNEGKTPLDHLSNGPGSAKLRELL 131
D GKT D +S G+ L E+L
Sbjct: 69 DKFGKTAFD-ISIDNGNEDLAEIL 91
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 32 VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDY 91
++ A++ G TPLH+AA+NG E KLLL GA + A+ G T +S+ +ED
Sbjct: 30 ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNG--NEDL 87
Query: 92 ATV 94
A +
Sbjct: 88 AEI 90
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 60
TPLH++A E+VK LLE ++ AQ+ +G+T ++ NG + A++L
Sbjct: 41 TPLHLAARNGHLEVVKLLLEAG----ADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 9/129 (6%)
Query: 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
+ +PLH++A Y + LL V +A+ TPLHMAA G ++LL
Sbjct: 33 LGTSPLHLAAQYGHFSTTEVLLR----AGVSRDARTKVDRTPLHMAASEGHANIVEVLLK 88
Query: 63 HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 122
HGA + AK MT LH ++ V+ L++Y AD + KT D +S
Sbjct: 89 HGADVNAKDMLKMTALH----WATEHNHQEVVELLIKYGADVHTQSKFCKTAFD-ISIDN 143
Query: 123 GSAKLRELL 131
G+ L E+L
Sbjct: 144 GNEDLAEIL 152
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
AA+ G ++ ++L+A+GA + AK NG TPLHL+ R+ VK LLE AD A+
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAA----RNGHLEVVKLLLEAGADVXAQ 86
Query: 108 DNEGKTPLDHLSNGPGSAKLRELL 131
D GKT D +S G+ L E+L
Sbjct: 87 DKFGKTAFD-ISIDNGNEDLAEIL 109
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 32 VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDY 91
++ A++ G TPLH+AA+NG E KLLL GA + A+ G T +S+ +ED
Sbjct: 48 ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNG--NEDL 105
Query: 92 ATV 94
A +
Sbjct: 106 AEI 108
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 60
TPLH++A E+VK LLE ++ AQ+ +G+T ++ NG + A++L
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLEA----GADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 6/98 (6%)
Query: 37 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKT 96
Q+ G +P+H AA+ G + K+L+ HGA + A + G P+HL++ E +++V +
Sbjct: 70 QDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIR-----EGHSSVVS 124
Query: 97 LLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
L +D +D G TPL+ L+ G+ L ++L H
Sbjct: 125 FLAPESDLHHRDASGLTPLE-LARQRGAQNLMDILQGH 161
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 6/98 (6%)
Query: 37 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKT 96
Q+ G +P+H AA+ G + K+L+ HGA + A + G P+HL++ E +++V +
Sbjct: 72 QDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIR-----EGHSSVVS 126
Query: 97 LLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
L +D +D G TPL+ L+ G+ L ++L H
Sbjct: 127 FLAPESDLHHRDASGLTPLE-LARQRGAQNLMDILQGH 163
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 37 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKT 96
Q+ G +P+H AA+ G + K+L+ HGA + G P+HL+V E + V +
Sbjct: 64 QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQ-----EGHTAVVS 118
Query: 97 LLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
L +D +D G TPL+ L+ G+ L ++L H
Sbjct: 119 FLAAESDLHRRDARGLTPLE-LALQRGAQDLVDILQGH 155
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 37 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKT 96
Q+ G +P+H AA+ G + K+L+ HGA + G P+HL+V E + V +
Sbjct: 70 QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQ-----EGHTAVVS 124
Query: 97 LLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134
L +D +D G TPL+ L+ G+ L ++L H
Sbjct: 125 FLAAESDLHRRDARGLTPLE-LALQRGAQDLVDILQGH 161
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
AA+ G ++ ++L+A+GA + AK +G TPLHL+ R V+ LL+ AD +A+
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAA----REGHLEIVEVLLKAGADVNAQ 64
Query: 108 DNEGKTPLDHLSNGPGSAKLRELL 131
D GKT D +S G+ L E+L
Sbjct: 65 DKFGKTAFD-ISIDNGNEDLAEIL 87
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 32 VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82
++ A++ G TPLH+AA+ G E ++LL GA + A+ G T +S+
Sbjct: 26 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISI 76
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 60
TPLH++A EIV+ LL+ ++ AQ+ +G+T ++ NG + A++L
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAG----ADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 61/112 (54%), Gaps = 9/112 (8%)
Query: 5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
+T LH++A Y++++ K LLE + + Q+ G TPLH A ++LL +
Sbjct: 23 ETALHLAARYSRSDAAKRLLEASADAXI----QDNMGRTPLHAAVSADAQGVFQILLRNR 78
Query: 65 AF-IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
A ++A+ ++G TPL L+ ++ ++ L+ +AD +A D+ GK+ L
Sbjct: 79 ATDLDARMHDGTTPLILAARLALE----GMLEDLINSHADVNAVDDLGKSAL 126
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 41 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 100
GET LH+AA+ ++AAK LL A + N G TPLH +V S D V +L
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAV-----SADAQGVFQILLR 76
Query: 101 N--ADCSAKDNEGKTPL 115
N D A+ ++G TPL
Sbjct: 77 NRATDLDARMHDGTTPL 93
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 8/132 (6%)
Query: 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
M +TPLH + + + + LL N +L+A+ G TPL +AA+ + L+
Sbjct: 54 MGRTPLHAAVSADAQGVFQILLR---NRATDLDARMHDGTTPLILAARLALEGMLEDLIN 110
Query: 63 HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 122
A + A + G + LH ++ + LL+ A+ ++N+ +TPL L+
Sbjct: 111 SHADVNAVDDLGKSALH----WAAAVNNVDAAVVLLKNGANKDMQNNKEETPL-FLAARE 165
Query: 123 GSAKLRELLLWH 134
GS + ++LL H
Sbjct: 166 GSYETAKVLLDH 177
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 9/111 (8%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
T LH++A Y++++ K LLE + + Q+ G TPLH A ++L+ + A
Sbjct: 59 TALHLAAAYSRSDAAKRLLEASADANI----QDNMGRTPLHAAVSADAQGVFQILIRNRA 114
Query: 66 F-IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
++A+ ++G TPL L+ ++ ++ L+ +AD +A D+ GK+ L
Sbjct: 115 TDLDARMHDGTTPLILAARLAVE----GMLEDLINSHADVNAVDDLGKSAL 161
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 41 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 100
G T LH+AA ++AAK LL A + N G TPLH +V S D V +L
Sbjct: 57 GATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAV-----SADAQGVFQILIR 111
Query: 101 N--ADCSAKDNEGKTPL 115
N D A+ ++G TPL
Sbjct: 112 NRATDLDARMHDGTTPL 128
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 1 MQMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 60
M TPL ++A V+ +LE N ++ A + G++ LH AA +AA +L
Sbjct: 121 MHDGTTPLILAARL----AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176
Query: 61 LAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116
L +GA + + N TPL L+ R Y T K LL++ A+ D+ + P D
Sbjct: 177 LKNGANKDMQNNREETPLFLAA----REGSYETAKVLLDHFANRDITDHMDRLPRD 228
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Query: 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL 61
M +TPLH + + + + L+ N +L+A+ G TPL +AA+ + L+
Sbjct: 88 NMGRTPLHAAVSADAQGVFQILIR---NRATDLDARMHDGTTPLILAARLAVEGMLEDLI 144
Query: 62 AHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG 121
A + A + G + LH ++ + LL+ A+ ++N +TPL L+
Sbjct: 145 NSHADVNAVDDLGKSALH----WAAAVNNVDAAVVLLKNGANKDMQNNREETPL-FLAAR 199
Query: 122 PGSAKLRELLLWH 134
GS + ++LL H
Sbjct: 200 EGSYETAKVLLDH 212
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 26 WPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYS 85
W N + +L + +G +PLH A + G + ++L+ GA I TPLHL+ +
Sbjct: 24 WLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG 83
Query: 86 IRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 117
R V+ LL+Y AD +A + G PL +
Sbjct: 84 HRD----IVQKLLQYKADINAVNEHGNVPLHY 111
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
+PLH + ++ +V+ L+ + N +TPLH+AA +G + + LL + A
Sbjct: 41 SPLHWACREGRSAVVEMLIM----RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKA 96
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 125
I A +G PLH + ++ + L+ A S + G+ P+D A
Sbjct: 97 DINAVNEHGNVPLHYACFWGQDQ----VAEDLVANGALVSICNKYGEMPVD-----KAKA 147
Query: 126 KLRELL 131
LRELL
Sbjct: 148 PLRELL 153
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 26 WPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYS 85
W N + +L + +G +PLH A + G + ++L+ GA I TPLHL+ +
Sbjct: 19 WLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG 78
Query: 86 IRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 117
R V+ LL+Y AD +A + G PL +
Sbjct: 79 HRD----IVQKLLQYKADINAVNEHGNVPLHY 106
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
+PLH + ++ +V+ L+ + N +TPLH+AA +G + + LL + A
Sbjct: 36 SPLHWACREGRSAVVEMLIM----RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKA 91
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 125
I A +G PLH + ++ + L+ A S + G+ P+D A
Sbjct: 92 DINAVNEHGNVPLHYACFWGQDQ----VAEDLVANGALVSICNKYGEMPVD-----KAKA 142
Query: 126 KLRELL 131
LRELL
Sbjct: 143 PLRELL 148
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 61/112 (54%), Gaps = 9/112 (8%)
Query: 5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
+T LH++A Y++++ K LLE + + Q+ G TPLH A ++L+ +
Sbjct: 58 ETALHLAARYSRSDAAKRLLEASADANI----QDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 65 AF-IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
A ++A+ ++G TPL L+ ++ ++ L+ +AD +A D+ GK+ L
Sbjct: 114 ATDLDARMHDGTTPLILAARLAVE----GMLEDLINSHADVNAVDDLGKSAL 161
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 41 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 100
GET LH+AA+ ++AAK LL A + N G TPLH +V S D V +L
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV-----SADAQGVFQILIR 111
Query: 101 N--ADCSAKDNEGKTPL 115
N D A+ ++G TPL
Sbjct: 112 NRATDLDARMHDGTTPL 128
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 1 MQMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 60
M TPL ++A V+ +LE N ++ A + G++ LH AA +AA +L
Sbjct: 121 MHDGTTPLILAARL----AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176
Query: 61 LAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116
L +GA + + N TPL L+ R Y T K LL++ A+ D+ + P D
Sbjct: 177 LKNGANKDMQNNREETPLFLAA----REGSYETAKVLLDHFANRDITDHMDRLPRD 228
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
M +TPLH + + + + L+ N +L+A+ G TPL +AA+ + L+
Sbjct: 89 MGRTPLHAAVSADAQGVFQILIR---NRATDLDARMHDGTTPLILAARLAVEGMLEDLIN 145
Query: 63 HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 122
A + A + G + LH ++ + LL+ A+ ++N +TPL L+
Sbjct: 146 SHADVNAVDDLGKSALH----WAAAVNNVDAAVVLLKNGANKDMQNNREETPL-FLAARE 200
Query: 123 GSAKLRELLLWH 134
GS + ++LL H
Sbjct: 201 GSYETAKVLLDH 212
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 61/112 (54%), Gaps = 9/112 (8%)
Query: 5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
+T LH++A Y++++ K LLE + + Q+ G TPLH A ++L+ +
Sbjct: 26 ETALHLAARYSRSDAAKRLLEASADANI----QDNMGRTPLHAAVSADAQGVFQILIRNR 81
Query: 65 AF-IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
A ++A+ ++G TPL L+ ++ ++ L+ +AD +A D+ GK+ L
Sbjct: 82 ATDLDARMHDGTTPLILAARLAVE----GMLEDLINSHADVNAVDDLGKSAL 129
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 41 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 100
GET LH+AA+ ++AAK LL A + N G TPLH +V S D V +L
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAV-----SADAQGVFQILIR 79
Query: 101 N--ADCSAKDNEGKTPL 115
N D A+ ++G TPL
Sbjct: 80 NRATDLDARMHDGTTPL 96
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 1 MQMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 60
M TPL ++A V+ +LE N ++ A + G++ LH AA +AA +L
Sbjct: 89 MHDGTTPLILAARL----AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 144
Query: 61 LAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116
L +GA + + N TPL L+ R Y T K LL++ A+ D+ + P D
Sbjct: 145 LKNGANKDMQNNREETPLFLAA----REGSYETAKVLLDHFANRDITDHMDRLPRD 196
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
M +TPLH + + + + L+ N +L+A+ G TPL +AA+ + L+
Sbjct: 57 MGRTPLHAAVSADAQGVFQILIR---NRATDLDARMHDGTTPLILAARLAVEGMLEDLIN 113
Query: 63 HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 122
A + A + G + LH ++ + LL+ A+ ++N +TPL L+
Sbjct: 114 SHADVNAVDDLGKSALH----WAAAVNNVDAAVVLLKNGANKDMQNNREETPL-FLAARE 168
Query: 123 GSAKLRELLLWH 134
GS + ++LL H
Sbjct: 169 GSYETAKVLLDH 180
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 9/126 (7%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPL ++ + + E V+ LLEW + + + + E+ L +A+ G + LLL
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGADPHILAKER----ESALSLASTGGYTDIVGLLLERDV 93
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 125
I NG TPL Y++R V+ LL AD + + + G TP+D L+ G
Sbjct: 94 DINIYDWNGGTPL----LYAVRGNHVKCVEALLARGADLTTEADSGYTPMD-LAVALGYR 148
Query: 126 KLRELL 131
K+++++
Sbjct: 149 KVQQVI 154
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 62/115 (53%), Gaps = 9/115 (7%)
Query: 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL 61
+ +T LH++A Y++++ K LLE + + Q+ G TPLH A ++L+
Sbjct: 56 RTGETALHLAARYSRSDAAKRLLEASADANI----QDNMGRTPLHAAVSADAQGVFQILI 111
Query: 62 AHGAF-IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
+ A ++A+ ++G TPL L+ ++ ++ L+ +AD +A D+ GK+ L
Sbjct: 112 RNRATDLDARMHDGTTPLILAARLAVE----GMLEDLINSHADVNAVDDLGKSAL 162
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 1 MQMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 60
M TPL ++A V+ +LE N ++ A + G++ LH AA +AA +L
Sbjct: 122 MHDGTTPLILAARL----AVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 177
Query: 61 LAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116
L +GA + + N TPL L+ R Y T K LL++ A+ D+ + P D
Sbjct: 178 LKNGANKDMQNNREETPLFLAA----REGSYETAKVLLDHFANRDITDHMDRLPRD 229
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
M +TPLH + + + + L+ N +L+A+ G TPL +AA+ + L+
Sbjct: 90 MGRTPLHAAVSADAQGVFQILIR---NRATDLDARMHDGTTPLILAARLAVEGMLEDLIN 146
Query: 63 HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 122
A + A + G + LH ++ + LL+ A+ ++N +TPL L+
Sbjct: 147 SHADVNAVDDLGKSALH----WAAAVNNVDAAVVLLKNGANKDMQNNREETPL-FLAARE 201
Query: 123 GSAKLRELLLWH 134
GS + ++LL H
Sbjct: 202 GSYETAKVLLDH 213
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 40 YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE 99
+G T L + K G E A+ LL GA + K G +H + R+ T++TLLE
Sbjct: 37 FGRTALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAVIH----DAARAGQLDTLQTLLE 91
Query: 100 YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE---QRKRRALEAC 147
+ AD + +DNEG PL HL+ G ++ E L+ H+ R + AC
Sbjct: 92 FQADVNIEDNEGNLPL-HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 8 LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF- 66
+H +A + + +++LLE+ + +E + G PLH+AAK G + L+ H A
Sbjct: 74 IHDAARAGQLDTLQTLLEFQADVNIE----DNEGNLPLHLAAKEGHLRVVEFLVKHTASN 129
Query: 67 IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD 108
+ + + G T L+ Y R+E V +L++ N A +
Sbjct: 130 VGHRNHKGDTACDLARLYG-RNE----VVSLMQANGAGGATN 166
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TP+ + Y ++VK LL + + +N+ LH AA +GC + A++LLA
Sbjct: 113 TPMIWATEYKHVDLVKLLLSKGSDINIRDNEENIC----LHWAAFSGCVDIAEILLAAKC 168
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
+ A +G +PLH++ R Y V L ++D + K+ EG+TPL
Sbjct: 169 DLHAVNIHGDSPLHIAA----RENRYDCVVLFLSRDSDVTLKNKEGETPL 214
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 9/115 (7%)
Query: 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL 61
Q ++PLH +A +I L++ N E Q TPL AA+N EA K L+
Sbjct: 9 QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ----RTPLMEAAENNHLEAVKYLI 64
Query: 62 AHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY-NADCSAKDNEGKTPL 115
GA ++ K G T LHL+ + Y V+ LL D + +D+ G TP+
Sbjct: 65 KAGALVDPKDAEGSTCLHLAA----KKGHYEVVQYLLSNGQMDVNCQDDGGWTPM 115
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 9/85 (10%)
Query: 8 LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFI 67
LH +A +I + LL K +L A N++G++PLH+AA+ + L L+ + +
Sbjct: 148 LHWAAFSGCVDIAEILLA----AKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV 203
Query: 68 EAKANNGMTPLHLS-----VWYSIR 87
K G TPL + VW +++
Sbjct: 204 TLKNKEGETPLQCASLNSQVWSALQ 228
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 16/137 (11%)
Query: 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
+ QTPLH++ N+ EI ++LL G D E ++ G TPLH+A + GC + +L
Sbjct: 44 LQQTPLHLAVITNQPEIAEALL-GAGCDP---ELRDFRGNTPLHLACEQGCLASVGVLTQ 99
Query: 63 HG------AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN-EGKTPL 115
+ ++A NG T LHL+ + V+ L+ AD +A++ G+T L
Sbjct: 100 SCTTPHLHSILKATNYNGHTCLHLASIHGY----LGIVELLVSLGADVNAQEPCNGRTAL 155
Query: 116 DHLSNGPGSAKLRELLL 132
HL+ + L LLL
Sbjct: 156 -HLAVDLQNPDLVSLLL 171
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%)
Query: 8 LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFI 67
LH++ + + + ++ D L QN +TPLH+A E A+ LL G
Sbjct: 12 LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP 71
Query: 68 EAKANNGMTPLHLSV 82
E + G TPLHL+
Sbjct: 72 ELRDFRGNTPLHLAC 86
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 10/130 (7%)
Query: 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMY-GETPLHMAAKNGCNEAAKLLL 61
M +T LH++A Y+ E L+E E +Y G+T LH+A N + LL
Sbjct: 36 MGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALL 95
Query: 62 AHGAFIEAKANNGMTPL--HLSVWYSIRSEDYAT-------VKTLLEYNADCSAKDNEGK 112
A GA + A+A + H ++Y +A V+ L+E+ AD A+D+ G
Sbjct: 96 ARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGN 155
Query: 113 TPLDHLSNGP 122
T L L P
Sbjct: 156 TVLHILILQP 165
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 54/126 (42%), Gaps = 15/126 (11%)
Query: 5 QTPLHVSAGYNKAEIVKSLLEWPGN-------DKVELEAQNM--YGETPLHMAAKNGCNE 55
QT LH++ +V++LL + N+ YGE PL AA G E
Sbjct: 76 QTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEE 135
Query: 56 AAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK------DN 109
+LL+ HGA I A+ + G T LH+ + ++ LL Y+ K +N
Sbjct: 136 IVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNN 195
Query: 110 EGKTPL 115
+G TP
Sbjct: 196 QGLTPF 201
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 26/158 (16%)
Query: 5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
++PL ++A N + + LL++ G E+ + GET LH+AA EAA +L+
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEG---CEVHQRGAMGETALHIAALYDNLEAAMVLMEAA 60
Query: 65 ---AF--IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN---------- 109
F + ++ G T LH++V +++ V+ LL A SA+
Sbjct: 61 PELVFEPMTSELYEGQTALHIAVI----NQNVNLVRALLARGASVSARATGSVFHYRPHN 116
Query: 110 ---EGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRAL 144
G+ PL + GS ++ LL+ H + R + +L
Sbjct: 117 LIYYGEHPLS-FAACVGSEEIVRLLIEHGADIRAQDSL 153
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 12/99 (12%)
Query: 31 KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFI-EAKANNGMTPLHLSVWYSIRSE 89
+++LEA+N G TPLH+A + E +LL GA + + + G TPLHL+V ++
Sbjct: 148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV----EAQ 203
Query: 90 DYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLR 128
+ ++ LL+ AD +A+ G+TPL GSA LR
Sbjct: 204 AASVLELLLKAGADPTARMYGGRTPL-------GSALLR 235
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
TPLHV+ + AE+V+ LL G D + E G TPLH+A + +LLL G
Sbjct: 159 HTPLHVAVIHKDAEMVR-LLRDAGADLNKPEP--TCGRTPLHLAVEAQAASVLELLLKAG 215
Query: 65 AFIEAKANNGMTPL 78
A A+ G TPL
Sbjct: 216 ADPTARMYGGRTPL 229
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 16/128 (12%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
T LH++ + + LL + + L+ QN G+T LH+AA G + L A GA
Sbjct: 11 TALHLAVIHQHEPFLDFLLGFSAGHEY-LDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATV-------------KTLLEYNADCSAKDNEGK 112
+ G T LHL+ +R+ A V T L + DC+ +
Sbjct: 70 GVLVAERGGHTALHLAC--RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAP 127
Query: 113 TPLDHLSN 120
+D N
Sbjct: 128 AAVDSQPN 135
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 56/99 (56%), Gaps = 12/99 (12%)
Query: 31 KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFI-EAKANNGMTPLHLSVWYSIRSE 89
+++LEA+N G TPLH+A + E +LL GA + + + G TPLHL+V ++
Sbjct: 148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV----EAQ 203
Query: 90 DYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLR 128
+ ++ LL+ AD +A+ G+TPL GSA LR
Sbjct: 204 AASVLELLLKAGADPTARMYGGRTPL-------GSALLR 235
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
TPLHV+ + AE+V+ LL G D + E G TPLH+A + +LLL G
Sbjct: 159 HTPLHVAVIHKDAEMVR-LLRDAGADLNKPEP--TCGRTPLHLAVEAQAASVLELLLKAG 215
Query: 65 AFIEAKANNGMTPL 78
A A+ G TPL
Sbjct: 216 ADPTARMYGGRTPL 229
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 16/128 (12%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
T LH++ + + LL + + L+ QN G+T LH+AA G + L A GA
Sbjct: 11 TALHLAVIHQHEPFLDFLLGFSAGHEY-LDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATV-------------KTLLEYNADCSAKDNEGK 112
+ G T LHL+ +R+ A V T L + DC+ +
Sbjct: 70 GVLVAERGGHTALHLAC--RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAP 127
Query: 113 TPLDHLSN 120
+D N
Sbjct: 128 AAVDSQPN 135
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 16/137 (11%)
Query: 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
+ QTPLH++ N+ EI ++LL G D E ++ G TPLH+A + GC + +L
Sbjct: 41 LQQTPLHLAVITNQPEIAEALL-GAGCDP---ELRDFRGNTPLHLACEQGCLASVGVLTQ 96
Query: 63 HG------AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD-NEGKTPL 115
+ ++A NG T LHL+ + V+ L+ AD +A++ G+T L
Sbjct: 97 SCTTPHLHSILKATNYNGHTCLHLASIHGY----LGIVELLVSLGADVNAQEPCNGRTAL 152
Query: 116 DHLSNGPGSAKLRELLL 132
HL+ + L LLL
Sbjct: 153 -HLAVDLQNPDLVSLLL 168
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 35/75 (46%)
Query: 8 LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFI 67
LH++ + + + ++ D L QN +TPLH+A E A+ LL G
Sbjct: 9 LHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP 68
Query: 68 EAKANNGMTPLHLSV 82
E + G TPLHL+
Sbjct: 69 ELRDFRGNTPLHLAC 83
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 9/126 (7%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPL ++ + + E V+ LLEW + + + + E+ L +A+ G + LLL
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGADPHILAKER----ESALSLASTGGYTDIVGLLLERDV 93
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 125
I NG TPL Y++ V+ LL AD + + + G TP+D L+ G
Sbjct: 94 DINIYDWNGGTPL----LYAVHGNHVKCVEALLARGADLTTEADSGYTPMD-LAVALGYR 148
Query: 126 KLRELL 131
K+++++
Sbjct: 149 KVQQVI 154
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 40 YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE 99
+G T L + K G E A+ LL GA + K G +H + R+ T++TLLE
Sbjct: 37 FGRTALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAVIH----DAARAGFLDTLQTLLE 91
Query: 100 YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE---QRKRRALEAC 147
+ AD + +DNEG PL HL+ G ++ E L+ H+ R + AC
Sbjct: 92 FQADVNIEDNEGNLPL-HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 40 YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE 99
+G T L + K G E A+ LL GA + K G +H + R+ T++TLLE
Sbjct: 37 FGRTALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAVIH----DAARAGFLDTLQTLLE 91
Query: 100 YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE---QRKRRALEAC 147
+ AD + +DNEG PL HL+ G ++ E L+ H+ R + AC
Sbjct: 92 FQADVNIEDNEGNLPL-HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 24/170 (14%)
Query: 156 ELENELSNIVGLHEL---KIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGK 212
E E E N VG ++ + QL + + + L R AL +G + P + G PGTGK
Sbjct: 192 EDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251
Query: 213 TMVARIL----GRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGI 265
T++AR + G ++ + +++ + G + R+ +EAE I
Sbjct: 252 TLIARAVANETGAFFFL-----------INGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 266 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV---VVIFAGYSEP 312
+F+DE + P ++ + + +++++MDG K V++ A + P
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 24/170 (14%)
Query: 156 ELENELSNIVGLHEL---KIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGK 212
E E E N VG ++ + QL + + + L R AL +G + P + G PGTGK
Sbjct: 192 EDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251
Query: 213 TMVARIL----GRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGI 265
T++AR + G ++ + +++ + G + R+ +EAE I
Sbjct: 252 TLIARAVANETGAFFFL-----------INGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 266 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV---VVIFAGYSEP 312
+F+DE + P ++ + + +++++MDG K V++ A + P
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 24/170 (14%)
Query: 156 ELENELSNIVGLHEL---KIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGK 212
E E E N VG ++ + QL + + + L R AL +G + P + G PGTGK
Sbjct: 192 EDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251
Query: 213 TMVARIL----GRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGI 265
T++AR + G ++ + +++ + G + R+ +EAE I
Sbjct: 252 TLIARAVANETGAFFFL-----------INGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 266 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV---VVIFAGYSEP 312
+F+DE + P ++ + + +++++MDG K V++ A + P
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 24/170 (14%)
Query: 156 ELENELSNIVGLHEL---KIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGK 212
E E E N VG ++ + QL + + + L R AL +G + P + G PGTGK
Sbjct: 192 EDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251
Query: 213 TMVARIL----GRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGI 265
T++AR + G ++ + +++ + G + R+ +EAE I
Sbjct: 252 TLIARAVANETGAFFFL-----------INGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 266 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV---VVIFAGYSEP 312
+F+DE + P ++ + + +++++MDG K V++ A + P
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
T L + N+ I + LL N + ++ G+TPL + G +E + LL H
Sbjct: 68 GSTALIWAVKNNRLGIAEKLLSKGSN----VNTKDFSGKTPLMWSIIFGYSEMSYFLLEH 123
Query: 64 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKT 113
GA + + G TPL ++ Y RSE VK LLE AD SA+D G T
Sbjct: 124 GANVNDRNLEGETPLIVASKYG-RSE---IVKKLLELGADISARDLTGLT 169
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
+TPL V+ + L+E DK LE +++ G T L A KN A+ LL+ G
Sbjct: 36 RTPLMVACMLGMENAIDKLVE--NFDK--LEDKDIEGSTALIWAVKNNRLGIAEKLLSKG 91
Query: 65 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
+ + K +G TPL S+ + Y LLE+ A+ + ++ EG+TPL
Sbjct: 92 SNVNTKDFSGKTPLMWSIIFGYSEMSY----FLLEHGANVNDRNLEGETPL 138
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 24/170 (14%)
Query: 156 ELENELSNIVGLHEL---KIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGK 212
E E E N VG ++ + QL + + + L R AL +G + P + G PGTGK
Sbjct: 192 EDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251
Query: 213 TMVARIL----GRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGI 265
T++AR + G ++ + +++ + G + R+ +EAE I
Sbjct: 252 TLIARAVANETGAFFFL-----------INGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 266 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV---VVIFAGYSEP 312
+F+DE + P ++ + + +++++MDG K V++ A + P
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 78/170 (45%), Gaps = 24/170 (14%)
Query: 156 ELENELSNIVGLHEL---KIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGK 212
E E E N VG ++ + QL + + + L R AL +G + P + G PGTGK
Sbjct: 192 EDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251
Query: 213 TMVARIL----GRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGI 265
T++AR + G ++ + +++ + G + R+ +EAE I
Sbjct: 252 TLIARAVANETGAFFFL-----------INGPEIMSKLAGESESNLRKAFEEAEKNAPAI 300
Query: 266 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV---VVIFAGYSEP 312
+F+DE + P ++ + + +++++MDG K V++ A + P
Sbjct: 301 IFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 40 YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE 99
+G T L + K G E A+ LL GA + K G +H + R+ T++TLLE
Sbjct: 37 FGRTALQVM-KLGNPEIARRLLLRGANPDLKDRTGNAVIH----DAARAGFLDTLQTLLE 91
Query: 100 YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE---QRKRRALEAC 147
+ AD + +DNEG PL HL+ G ++ E L+ H+ R + AC
Sbjct: 92 FQADVNIEDNEGNLPL-HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 7/127 (5%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPLH + +V L+++ G D ++ + G + +H+AA+ G L+A G
Sbjct: 78 TPLHWATRQGHLSMVVQLMKY-GADPSLIDGE---GCSCIHLAAQFGHTSIVAYLIAKGQ 133
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSA 125
++ NGMTPL +W + R+ + LL +N + D K H + G+
Sbjct: 134 DVDMMDQNGMTPL---MWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNT 190
Query: 126 KLRELLL 132
+ LLL
Sbjct: 191 TVISLLL 197
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 40 YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE 99
+G T L + K G E A+ LL GA + K G +H + R+ T++TLLE
Sbjct: 37 FGRTALQVM-KLGNPEIARRLLLRGANPDLKDRTGFAVIH----DAARAGFLDTLQTLLE 91
Query: 100 YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE---QRKRRALEAC 147
AD + +DNEG PL HL+ G ++ E L+ H+ R + AC
Sbjct: 92 NQADVNIEDNEGNLPL-HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TP H++ E+VKSL + P K +L G T LH+A E ++ L+ +GA
Sbjct: 74 TPFHIACSVGNLEVVKSLYDRPL--KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY-----NADCSAKDNEGKTPLDH-LS 119
+ K PLH R+ ++K L+E + + +D +G TPL H L+
Sbjct: 132 SVRIKDKFNQIPLH-------RAASVGSLK-LIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 120 NGPGSA 125
G G A
Sbjct: 184 EGHGDA 189
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TP H++ E+VKSL + P K +L G T LH+A E ++ L+ +GA
Sbjct: 74 TPFHIACSVGNLEVVKSLYDRPL--KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY-----NADCSAKDNEGKTPLDH-LS 119
+ K PLH R+ ++K L+E + + +D +G TPL H L+
Sbjct: 132 SVRIKDKFNQIPLH-------RAASVGSLK-LIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 120 NGPGSA 125
G G A
Sbjct: 184 EGHGDA 189
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 16/126 (12%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TP H++ E+VKSL + P K +L G T LH+A E ++ L+ +GA
Sbjct: 74 TPFHIACSVGNLEVVKSLYDRPL--KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY-----NADCSAKDNEGKTPLDH-LS 119
+ K PLH R+ ++K L+E + + +D +G TPL H L+
Sbjct: 132 SVRIKDKFNQIPLH-------RAASVGSLK-LIELLCGLGKSAVNWQDKQGWTPLFHALA 183
Query: 120 NGPGSA 125
G G A
Sbjct: 184 EGHGDA 189
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
+TPLH + + + + LL N L A+ G TPL +AA+ + L+
Sbjct: 85 RTPLHAAVAADAMGVFQILLR---NRATNLNARMHDGTTPLILAARLAIEGMVEDLITAD 141
Query: 65 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
A I A N+G T LH W + + A V LL ++A+ A+D++ +TPL
Sbjct: 142 ADINAADNSGKTALH---WAAAVNNTEA-VNILLMHHANRDAQDDKDETPL 188
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 10/131 (7%)
Query: 5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
+T LH++A + +A+ K LL+ + +Q+ G TPLH A ++LL +
Sbjct: 52 ETSLHLAARFARADAAKRLLDA----GADANSQDNTGRTPLHAAVAADAMGVFQILLRNR 107
Query: 65 AF-IEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 123
A + A+ ++G TPL L+ +I V+ L+ +AD +A DN GKT L H +
Sbjct: 108 ATNLNARMHDGTTPLILAARLAIEG----MVEDLITADADINAADNSGKTAL-HWAAAVN 162
Query: 124 SAKLRELLLWH 134
+ + +LL H
Sbjct: 163 NTEAVNILLMH 173
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 1 MQMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 60
M TPL ++A +V+ L+ ++ A + G+T LH AA EA +L
Sbjct: 115 MHDGTTPLILAARLAIEGMVEDLITA----DADINAADNSGKTALHWAAAVNNTEAVNIL 170
Query: 61 LAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116
L H A +A+ + TPL L+ R Y K LL+ A+ D+ + P D
Sbjct: 171 LMHHANRDAQDDKDETPLFLAA----REGSYEASKALLDNFANREITDHMDRLPRD 222
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA 62
++ +P + + EI+ +L+ D L N YG L AA+ G + KLLL
Sbjct: 71 ISDSPYLYAGAQGRTEILAYMLKHATPD---LNKHNRYGGNALIPAAEKGHIDNVKLLLE 127
Query: 63 HG-AFIEAKANNGMTPLHLSVWYSIRSEDYA-TVKTLLEYNADCSAKDNEGKTPLDHLSN 120
G I+ + + G T L +V ++ Y VK L+E AD S KDN G+T +D+ +N
Sbjct: 128 DGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDY-AN 186
Query: 121 GPGSAKLRELLLWHS 135
G ++ ++L ++
Sbjct: 187 QKGYTEISKILAQYN 201
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPLH + + ++V+ LL+ K + ++PLH AAKNG + KLLL++GA
Sbjct: 45 TPLHEACNHGHLKVVELLLQ----HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGA 100
Query: 66 FIEAKANNGMTPLHLSVWYSIRS 88
A G+ P+ + S++S
Sbjct: 101 SRNAVNIFGLRPVDYTDDESMKS 123
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 12/129 (9%)
Query: 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63
+T LH+++ V+ LL+ + V+ A G TPLH A +G + +LLL H
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHA----GWTPLHEACNHGHLKVVELLLQH 65
Query: 64 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG 123
A + +PLH + ++ VK LL Y A +A + G P+D+ +
Sbjct: 66 KALVNTTGYQNDSPLHDAA----KNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDD--- 118
Query: 124 SAKLRELLL 132
++ LLL
Sbjct: 119 -ESMKSLLL 126
Score = 33.1 bits (74), Expect = 0.28, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 5/95 (5%)
Query: 38 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTL 97
N GET LH+A+ G + + LL +G+ K + G TPLH + + V+ L
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHG----HLKVVELL 62
Query: 98 LEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 132
L++ A + + +PL H + G + +LLL
Sbjct: 63 LQHKALVNTTGYQNDSPL-HDAAKNGHVDIVKLLL 96
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 8 LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFI 67
+HV+A + + V+ L+E V QN +G T LH+A K GC + AK L + G
Sbjct: 24 IHVAARKGQTDEVRRLIE----TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV- 78
Query: 68 EAKANNGMTPLHLSV 82
+G P+HL+V
Sbjct: 79 -HSLWHGQKPIHLAV 92
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 18/111 (16%)
Query: 5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
Q P+H++ NK ++V +L +E G+ P + N C+E + + G
Sbjct: 85 QKPIHLAVXANKTDLVVAL----------VEGAKERGQXPESLL--NECDE--REVNEIG 130
Query: 65 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
+ + K G T LH V + E +K L++ A +AKD +TPL
Sbjct: 131 SHV--KHCKGQTALHWCV--GLGPEYLEXIKILVQLGASPTAKDKADETPL 177
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 161 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVAR 217
++ G+HE K+++R++ + ER L++GA+ P LG PG GKT++A+
Sbjct: 5 FKDVAGMHEAKLEVREFVDYLKSPERF----LQLGAKVPKGALLLGPPGCGKTLLAK 57
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPL +A + + +V+ LL+ + ++ + + E+ L +A G + K+LL G
Sbjct: 54 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR----ESALSLACSKGYTDIVKMLLDCGV 109
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116
+ NG TPL Y++ VK LLE AD + + + G +D
Sbjct: 110 DVNEYDWNGGTPL----LYAVHGNHVKCVKMLLESGADPTIETDSGYNSMD 156
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPL +A + + +V+ LL+ + ++ + + E+ L +A G + K+LL G
Sbjct: 36 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR----ESALSLACSKGYTDIVKMLLDCGV 91
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116
+ NG TPL Y++ VK LLE AD + + + G +D
Sbjct: 92 DVNEYDWNGGTPL----LYAVHGNHVKCVKMLLESGADPTIETDSGYNSMD 138
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 8/111 (7%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPL +A + + +V+ LL+ + ++ + + E+ L +A G + K+LL G
Sbjct: 38 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR----ESALSLACSKGYTDIVKMLLDCGV 93
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116
+ NG TPL Y++ VK LLE AD + + + G +D
Sbjct: 94 DVNEYDWNGGTPL----LYAVHGNHVKCVKMLLESGADPTIETDSGYNSMD 140
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 43 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA 102
+P+H AA+ G E L+A+G I+ K ++ TPL+L+ ++ A VK LLE A
Sbjct: 103 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLAC----ENQQRACVKKLLESGA 158
Query: 103 DCSAKDNEGK 112
D N+GK
Sbjct: 159 DV----NQGK 164
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPL+++ + VK LLE G D + + Q ++PLH A+ E A LL+ GA
Sbjct: 136 TPLYLACENQQRACVKKLLE-SGADVNQGKGQ----DSPLHAVARTASEELACLLMDFGA 190
Query: 66 FIEAKANNGMTPLHL 80
+AK G P+ L
Sbjct: 191 DTQAKNAEGKRPVEL 205
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 9/110 (8%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
+PLH + VK LL+ ++ TPL A +G + LLL HGA
Sbjct: 38 SPLHEACLGGHLSCVKILLK----HGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGA 93
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
++ +++ +P+H + R V +L+ Y + K + TPL
Sbjct: 94 SVQPESDLA-SPIH----EAARRGHVECVNSLIAYGGNIDHKISHLGTPL 138
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 43 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA 102
+P+H AA+ G E L+A+G I+ K ++ TPL+L+ ++ A VK LLE A
Sbjct: 159 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLAC----ENQQRACVKKLLESGA 214
Query: 103 DCSAKDNEGK 112
D N+GK
Sbjct: 215 DV----NQGK 220
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPL+++ + VK LLE G D + + Q ++PLH + E A LL+ GA
Sbjct: 192 TPLYLACENQQRACVKKLLE-SGADVNQGKGQ----DSPLHAVVRTASEELACLLMDFGA 246
Query: 66 FIEAKANNGMTPLHL 80
+AK G P+ L
Sbjct: 247 DTQAKNAEGKRPVEL 261
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 9/110 (8%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
+PLH + VK LL+ ++ TPL A +G + LLL HGA
Sbjct: 94 SPLHEACLGGHLSCVKILLK----HGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGA 149
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
++ +++ +P+H + R V +L+ Y + K + TPL
Sbjct: 150 SVQPESDLA-SPIH----EAARRGHVECVNSLIAYGGNIDHKISHLGTPL 194
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 41 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 100
G PLH AA G E + LL GA I A + +TPL +V+ S VK LL
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS----CVKLLLSK 90
Query: 101 NADCSAKDNEGKTPLDHLSN 120
AD + K +G T L+ N
Sbjct: 91 GADKTVKGPDGLTALEATDN 110
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 1 MQMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 60
++ + PLH +A + EI++ LL G D + A + + TPL A G KLL
Sbjct: 32 LEGGRKPLHYAADCGQLEILEFLL-LKGAD---INAPDKHHITPLLSAVYEGHVSCVKLL 87
Query: 61 LAHGAFIEAKANNGMTPLHLSVWYSIRS 88
L+ GA K +G+T L + +I++
Sbjct: 88 LSKGADKTVKGPDGLTALEATDNQAIKA 115
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG 64
+T LH +A + IVK L+ G++K + Q+ G+TP+ +AA+ G E L+ G
Sbjct: 280 RTALHYAAQVSNXPIVKYLVGEKGSNK---DKQDEDGKTPIXLAAQEGRIEVVXYLIQQG 336
Query: 65 AFIEA 69
A +EA
Sbjct: 337 ASVEA 341
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 38 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTL 97
N+ G T LH A + + K L+ +GA I N G PLH + S D A + L
Sbjct: 70 NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA--SCGYLDIA--EYL 125
Query: 98 LEYNADCSAKDNEGKTPLD 116
+ A A ++EG TPLD
Sbjct: 126 ISQGAHVGAVNSEGDTPLD 144
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 9/105 (8%)
Query: 41 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 100
G T LH+AA G E KLL+ + K +G TPLH + + + L+E
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEE----ACRILVEN 254
Query: 101 NADCSAKDNEGKTPLDHLSNGPGSAKLRELL----LWHSEEQRKR 141
D A + G+T D +++ L EL L HSE++ K+
Sbjct: 255 LCDMEAVNKVGQTAFD-VADEDILGYLEELQKKQNLLHSEKREKK 298
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
T LH + + ++VK L+E N + + G PLH AA G + A+ L++ GA
Sbjct: 75 TALHQACIDDNVDMVKFLVENGAN----INQPDNEGWIPLHAAASCGYLDIAEYLISQGA 130
Query: 66 FIEAKANNGMTPLHL 80
+ A + G TPL +
Sbjct: 131 HVGAVNSEGDTPLDI 145
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 48 AAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107
A +G E LL GA I +G+T LH + ++ VK L+E A+ +
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALH----QACIDDNVDMVKFLVENGANINQP 102
Query: 108 DNEGKTPLDHLSNGPGSAKLRELLL 132
DNEG PL H + G + E L+
Sbjct: 103 DNEGWIPL-HAAASCGYLDIAEYLI 126
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL 61
+ T L+ + +IV+ L P +EL QN G+T LH AA G + +LLL
Sbjct: 104 KAGSTALYWACHGGHKDIVEXLFTQP---NIELNQQNKLGDTALHAAAWKGYADIVQLLL 160
Query: 62 AHGA 65
A GA
Sbjct: 161 AKGA 164
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 41 GETPLHMAAKNGCNEAAKLLLAH-GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE 99
G T L AA+ G E K+LL GA + A N G L ++ S S+ A LL+
Sbjct: 148 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 207
Query: 100 YNADCSAKDNEGKTPL 115
+ AD + + GKTPL
Sbjct: 208 HGADVNVRGERGKTPL 223
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 18 EIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTP 77
++V+ LLE N + E G TPLH A + + +LLL HGA + NG TP
Sbjct: 19 DLVQQLLEGGANVNFQEEEG---GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATP 75
Query: 78 LHL-SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
L ++ S++ +K L AD + D G T
Sbjct: 76 FLLAAIAGSVK-----LLKLFLSKGADVNECDFYGFTAF 109
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 10/114 (8%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH--MAAKNGCNEA-AKLLLA 62
T L +A E++K LL+ G D + NM +H +++ + EA LLL
Sbjct: 150 TALMDAAEKGHVEVLKILLDEMGADVNACD--NMGRNALIHALLSSDDSDVEAITHLLLD 207
Query: 63 HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY-NADCSAKDNEGKTPL 115
HGA + + G TPL L+V + V+ LLE + + + D++GKT L
Sbjct: 208 HGADVNVRGERGKTPLILAV----EKKHLGLVQRLLEQEHIEINDTDSDGKTAL 257
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPLH + ++ +IV+ LL G D V L +N G TP +AA G + KL L+ GA
Sbjct: 41 TPLHNAVQMSREDIVELLLRH-GADPV-LRKKN--GATPFLLAAIAGSVKLLKLFLSKGA 96
Query: 66 FIEAKANNGMTPLHLSVWY 84
+ G T + Y
Sbjct: 97 DVNECDFYGFTAFMEAAVY 115
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 41 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY 100
G PLH AA G E + LL GA I A + +TPL +V+ S VK LL
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS----CVKLLLSK 95
Query: 101 NADCSAKDNEGKTPLDHLSN 120
AD + K +G T + N
Sbjct: 96 GADKTVKGPDGLTAFEATDN 115
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 1 MQMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 60
++ + PLH +A + EI++ LL G D + A + + TPL A G KLL
Sbjct: 37 LEGGRKPLHYAADCGQLEILEFLL-LKGAD---INAPDKHHITPLLSAVYEGHVSCVKLL 92
Query: 61 LAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE 99
L+ GA K +G+T + + D +K LL+
Sbjct: 93 LSKGADKTVKGPDGLT--------AFEATDNQAIKALLQ 123
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 60/156 (38%), Gaps = 20/156 (12%)
Query: 200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK 259
PH+ F G PG GKT A L R L+ G E+ +D G V K R K
Sbjct: 47 PHLLFAGPPGVGKTTAALALARELF--GENWRHNFLELNASDERGINVIREKVKEFARTK 104
Query: 260 EAEGG---ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRV 316
G I+F+DEA L Q A +AL M + ++ YS ++
Sbjct: 105 PIGGASFKIIFLDEADAL--TQDAQ------QALRRTMEMFSSNVRFILSCNYS---SKI 153
Query: 317 IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ 352
I + C F F E++AK L N+
Sbjct: 154 IEPIQSRC----AIFRFRPLRDEDIAKRLRYIAENE 185
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 41 GETPLHMAAKNGCNEAAKLLLAH-GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLE 99
G T L AA+ G E K+LL GA + A N G L ++ S S+ A LL+
Sbjct: 168 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLD 227
Query: 100 YNADCSAKDNEGKTPL 115
+ AD + + GKTPL
Sbjct: 228 HGADVNVRGERGKTPL 243
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 18 EIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTP 77
++V+ LLE N + E G TPLH A + + +LLL HGA + NG TP
Sbjct: 39 DLVQQLLEGGANVNFQEEEG---GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATP 95
Query: 78 LHL-SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115
L ++ S++ +K L AD + D G T
Sbjct: 96 FILAAIAGSVK-----LLKLFLSKGADVNECDFYGFTAF 129
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 10/114 (8%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLH--MAAKNGCNEA-AKLLLA 62
T L +A E++K LL+ G D + NM +H +++ + EA LLL
Sbjct: 170 TALMDAAEKGHVEVLKILLDEMGADVNACD--NMGRNALIHALLSSDDSDVEAITHLLLD 227
Query: 63 HGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY-NADCSAKDNEGKTPL 115
HGA + + G TPL L+V + V+ LLE + + + D++GKT L
Sbjct: 228 HGADVNVRGERGKTPLILAV----EKKHLGLVQRLLEQEHIEINDTDSDGKTAL 277
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
TPLH + ++ +IV+ LL G D V L +N G TP +AA G + KL L+ GA
Sbjct: 61 TPLHNAVQMSREDIVELLLRH-GADPV-LRKKN--GATPFILAAIAGSVKLLKLFLSKGA 116
Query: 66 FIEAKANNGMTPLHLSVWY 84
+ G T + Y
Sbjct: 117 DVNECDFYGFTAFMEAAVY 135
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 17/131 (12%)
Query: 188 KALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFV 247
KALGL P + G PG GKT++A+ + + I V+ +L+ +V
Sbjct: 37 KALGLVT----PAGVLLAGPPGCGKTLLAKAVANESGLNFI-------SVKGPELLNMYV 85
Query: 248 GHTGPKTRR---RIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---GK 301
G + R+ R K + ++F DE L P + + + + ++++ MDG +
Sbjct: 86 GESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ 145
Query: 302 VVVIFAGYSEP 312
V I A + P
Sbjct: 146 QVFIMAATNRP 156
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 16/145 (11%)
Query: 200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK 259
PH+ F G PGTGKT L R +Y G ++ V E+ +D G V R +IK
Sbjct: 47 PHLLFYGPPGTGKTSTIVALAREIY--GKNYSNMVLELNASDDRGIDV------VRNQIK 98
Query: 260 EAEGGILFVDEAYRLIPMQKADD-KDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIA 318
+ + ++LI + +AD + AL ++ + A Y+ + +
Sbjct: 99 DFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALL 158
Query: 319 SNEGFCRRVTKFFHFNDFNSEELAK 343
S C R F F E + +
Sbjct: 159 SQ---CTR----FRFQPLPQEAIER 176
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 63/258 (24%), Positives = 112/258 (43%), Gaps = 54/258 (20%)
Query: 153 KMDELENE-LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTG 211
KMD+ E S+I GL Q+++ + + L L ++G + P + G PGTG
Sbjct: 172 KMDKSPTESYSDIGGLES---QIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTG 228
Query: 212 KTMVARILGR-----LLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEG--- 263
KT++A+ + L +VG ++L+ +++G GP+ R+I + G
Sbjct: 229 KTLLAKAVANQTSATFLRIVG------------SELIQKYLGD-GPRLCRQIFKVAGENA 275
Query: 264 -GILFVDEAYRLIPMQKADDKDYGIEALE----EIMSVMDG----GKVVVIFAGYSEPMK 314
I+F+DE I ++ D G ++ E+++ +DG G V VI A
Sbjct: 276 PSIVFIDE-IDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMA-----TN 329
Query: 315 RVIASNEGFCR--RVTKFFHFNDFNSEELAKILHI---KMNNQTEDSL---------LYG 360
++ + R R+ + F + + KIL I KMN + +L L G
Sbjct: 330 KIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSG 389
Query: 361 FKLHSSCSMDAIAALIEK 378
+ + C+ + AL E+
Sbjct: 390 ADIQAMCTEAGLLALRER 407
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 20/122 (16%)
Query: 155 DELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTM 214
D+++ +++ G E K ++ + + + R + LG K+ P + +G PGTGKT+
Sbjct: 5 DQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKI----PKGVLMVGPPGTGKTL 60
Query: 215 VARIL---GRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTR---RRIKEAEGGILFV 268
+A+ + ++ + + +D V FVG + R + K+A I+F+
Sbjct: 61 LAKAIAGEAKVPFFT----------ISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFI 110
Query: 269 DE 270
DE
Sbjct: 111 DE 112
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 193 KVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGP 252
++GAR P + +G PGTGKT++AR + + + +D V FVG
Sbjct: 43 RIGARMPKGILLVGPPGTGKTLLARAVAGEANV-------PFFHISGSDFVELFVGVGAA 95
Query: 253 KTRRRIKEAEG---GILFVDE 270
+ R +A+ I+F+DE
Sbjct: 96 RVRDLFAQAKAHAPCIVFIDE 116
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 241
PHM F G PGTGKT L + LY ++ + R+ E+ +D
Sbjct: 59 PHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASD 99
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG-EFVGHTGPKTRRR- 257
PH+ F G PGTGKT A L R L+ G D E+ +D G + V H + R
Sbjct: 39 PHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGIDVVRHKIKEFARTA 96
Query: 258 -IKEAEGGILFVDEA 271
I A I+F+DEA
Sbjct: 97 PIGGAPFKIIFLDEA 111
>pdb|1Z7A|A Chain A, Crystal Structure Of Probable Polysaccharide Deacetylase
From Pseudomonas Aeruginosa Pao1
pdb|1Z7A|B Chain B, Crystal Structure Of Probable Polysaccharide Deacetylase
From Pseudomonas Aeruginosa Pao1
pdb|1Z7A|C Chain C, Crystal Structure Of Probable Polysaccharide Deacetylase
From Pseudomonas Aeruginosa Pao1
pdb|1Z7A|D Chain D, Crystal Structure Of Probable Polysaccharide Deacetylase
From Pseudomonas Aeruginosa Pao1
pdb|1Z7A|E Chain E, Crystal Structure Of Probable Polysaccharide Deacetylase
From Pseudomonas Aeruginosa Pao1
pdb|1Z7A|F Chain F, Crystal Structure Of Probable Polysaccharide Deacetylase
From Pseudomonas Aeruginosa Pao1
pdb|1Z7A|G Chain G, Crystal Structure Of Probable Polysaccharide Deacetylase
From Pseudomonas Aeruginosa Pao1
pdb|1Z7A|H Chain H, Crystal Structure Of Probable Polysaccharide Deacetylase
From Pseudomonas Aeruginosa Pao1
Length = 308
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 234 VTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAY 272
+TE+ VG + G TGP TRR + E EGG L+ + Y
Sbjct: 152 LTELTGQRPVGWYTGRTGPNTRRLVXE-EGGFLYDSDTY 189
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG-EFVGHTGPKTRRR- 257
PH+ F G PGTGKT A L R L+ G D E+ +D G + V H + R
Sbjct: 39 PHLLFSGPPGTGKTATAIALARDLF--GENWRDNFIEMNASDERGIDVVRHKIKEFARTA 96
Query: 258 -IKEAEGGILFVDEA 271
I A I+F+DEA
Sbjct: 97 PIGGAPFKIIFLDEA 111
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 17/115 (14%)
Query: 193 KVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGP 252
++G P + G PGTGKTM+ + + I V ++ V +++G GP
Sbjct: 200 QIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFI-------RVNGSEFVHKYLGE-GP 251
Query: 253 KTRRRI----KEAEGGILFVDE----AYRLIPMQKADDKDYGIEALEEIMSVMDG 299
+ R + +E I+F+DE A + Q D++ L E+++ MDG
Sbjct: 252 RMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQ-RILIELLTQMDG 305
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 1 MQMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLL 60
M TPL ++A ++ +LE N ++ A + G++ LH AA +AA +L
Sbjct: 12 MHDGTTPLILAARL----ALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 67
Query: 61 LAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116
L +GA + + N TPL L+ R Y T K LL++ A+ D+ + P D
Sbjct: 68 LKNGANKDMQNNKEETPLFLAA----REGSYETAKVLLDHFANRDITDHMDRLPRD 119
>pdb|1OJL|A Chain A, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|B Chain B, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|C Chain C, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|D Chain D, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|E Chain E, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
pdb|1OJL|F Chain F, Crystal Structure Of A Sigma54-activator Suggests The
Mechanism For The Conformational Switch Necessary For
Sigma54 Binding
Length = 304
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 206 GNPGTGKTMVARILGRLLYMVG-ILPTDRVTEVQRTDLVGEFVGH-----TGPKTRR--R 257
G+ GTGK +VAR L L T + + L E GH TG RR R
Sbjct: 32 GDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGR 91
Query: 258 IKEAEGGILFVDEAYRLIPMQK 279
EA+GG LF+DE + P+ +
Sbjct: 92 FVEADGGTLFLDEIGDISPLMQ 113
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 10/81 (12%)
Query: 193 KVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGP 252
++GAR P + +G PGTG T++AR + + + +D V FVG
Sbjct: 43 RIGARMPKGILLVGPPGTGATLLARAVAGEANV-------PFFHISGSDFVELFVGVGAA 95
Query: 253 KTRRRIKEAEG---GILFVDE 270
+ R +A+ I+F+DE
Sbjct: 96 RVRDLFAQAKAHAPCIVFIDE 116
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
T LH + EIVK L+++ V + A + G TPLH AA + K L+ GA
Sbjct: 72 TALHNAVCAGHTEIVKFLVQF----GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Query: 66 FIEAKANNGM 75
+ A + M
Sbjct: 128 AVFAMTYSDM 137
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 38 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81
N G T LH A G E K L+ G + A ++G TPLH +
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCA 110
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
T LH + EIVK L+++ V + A + G TPLH AA + K L+ GA
Sbjct: 72 TALHNAVCAGHTEIVKFLVQF----GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Query: 66 FIEAKANNGM 75
+ A + M
Sbjct: 128 AVFAMTYSDM 137
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 38 NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81
N G T LH A G E K L+ G + A ++G TPLH +
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCA 110
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 193 KVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGP 252
KVG P + G PGTGKT++A+ V V ++LV +F+G
Sbjct: 45 KVGIEPPKGILLYGPPGTGKTLLAK-------AVATETNATFIRVVGSELVKKFIGEGAS 97
Query: 253 KTR---RRIKEAEGGILFVDE 270
+ + KE I+F+DE
Sbjct: 98 LVKDIFKLAKEKAPSIIFIDE 118
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Query: 166 GLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 225
G+ L Q+R+ + + L + + +VG + P + G PGTGKT++A+ + +
Sbjct: 182 GIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA 241
Query: 226 VGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRI---KEAEGGILFVDEA 271
I + +V +++G + R KE E I+F+DE
Sbjct: 242 NFIFSP-------ASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEV 283
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL 61
Q QT L ++ + + ++VK+LL + ++ Q+ G T L A ++G E A LLL
Sbjct: 181 QAGQTALMLAVSHGRVDVVKALLAC----EADVNVQDDDGSTALMCACEHGHKEIAGLLL 236
Query: 62 A 62
A
Sbjct: 237 A 237
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 58/155 (37%), Gaps = 28/155 (18%)
Query: 202 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA 261
M G PGTGKT +A ++ R +V+R V V R +
Sbjct: 53 MILWGPPGTGKTTLAEVIARYAN----------ADVERISAVTSGVKEIREAIERARQNR 102
Query: 262 EGG---ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIA 318
G ILFVDE +R Q+ + + ++ G + I A P +
Sbjct: 103 NAGRRTILFVDEVHRFNKSQQ-----------DAFLPHIEDGTITFIGATTENPSFEL-- 149
Query: 319 SNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQT 353
N R + + ++E++ ++L M ++T
Sbjct: 150 -NSALLSRA-RVYLLKSLSTEDIEQVLTQAMEDKT 182
>pdb|2CWX|A Chain A, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 1 Crystal)
pdb|2CWX|E Chain E, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 1 Crystal)
pdb|2CXE|A Chain A, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|B Chain B, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|C Chain C, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2CXE|D Chain D, Crystal Structure Of Octameric Ribulose-1,5-bisphosphate
Carboxylase/oxygenase (rubisco) From Pyrococcus
Horikoshii Ot3 (form- 2 Crystal)
pdb|2D69|A Chain A, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|B Chain B, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|D Chain D, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
pdb|2D69|E Chain E, Crystal Structure Of The Complex Of Sulfate Ion And
Octameric Ribulose-1,5-Bisphosphate CarboxylaseOXYGENASE
(RUBISCO) FROM Pyrococcus Horikoshii Ot3 (Form-2
Crystal)
Length = 430
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 170 LKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI 228
+ I + W+ + E + LGL + A R H AF NP G TM+A L + M+G+
Sbjct: 251 IDIVVAGWSALQYMREVTEDLGLAIHAHRAMHAAFTRNPRHGITMLA--LAKAARMIGV 307
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 5 QTPLHV---SAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL 61
+T LH+ S IV L++ GN L+ Q G T LH E KLLL
Sbjct: 170 ETALHLAVRSVDRTSLHIVDFLVQNSGN----LDKQTGKGSTALHYCCLTDNAECLKLLL 225
Query: 62 AHGAFIEAKANNGMTPLHLS 81
A IE +G TPL ++
Sbjct: 226 RGKASIEIANESGETPLDIA 245
>pdb|2IYQ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate And Adp
pdb|2IYR|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate
pdb|2IYR|B Chain B, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate
pdb|2IYS|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate, Open Lid (Conf. A)
pdb|2IYT|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Unliganded State, Open Lid (conf. A)
pdb|2IYU|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Adp, Open Lid (Conf. A)
pdb|2IYV|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Adp, Open Lid (Conf. B)
pdb|2IYW|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Mgatp, Open Lid (Conf. B)
pdb|2IYX|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate And So4
pdb|2IYY|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate-3-Phosphate And So4
pdb|2IYZ|A Chain A, Shikimate Kinase From Mycobacterium Tuberculosis In
Complex With Shikimate-3-Phosphate And Adp
Length = 184
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK 259
P +G PG+GK+ + R L + L VG+L TD E + + + G + RRI+
Sbjct: 3 PKAVLVGLPGSGKSTIGRRLAKALG-VGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIE 61
Query: 260 E 260
E
Sbjct: 62 E 62
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVAR 217
S++ GL + Q+ + + ++L +R +G R P G PGTGKT++AR
Sbjct: 181 SDVGGLDK---QIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLAR 233
>pdb|1L4U|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Pt(Ii) At 1.8
Angstrom Resolution
pdb|1L4Y|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp At 2.0 Angstrom
Resolution
pdb|1U8A|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate And Adp At 2.15
Angstrom Resolution
pdb|1WE2|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Mgadp And Shikimic Acid
pdb|1ZYU|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate And Amppcp At 2.85
Angstrom Resolution
pdb|2G1J|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase At 2.0 Angstrom Resolution
pdb|2G1J|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase At 2.0 Angstrom Resolution
pdb|2G1K|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Shikimate
Kinase In Complex With Shikimate At 1.75 Angstrom
Resolution
pdb|2DFN|A Chain A, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Shikimate At 1.9
Angstrons Of Resolution
pdb|2DFT|A Chain A, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|B Chain B, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|C Chain C, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|2DFT|D Chain D, Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis Complexed With Adp And Mg At 2.8 Angstrons
Of Resolution
pdb|3BAF|A Chain A, Crystal Structure Of Shikimate Kinase From Mycobacterium
Tuberculosis In Complex With Amp-Pnp
Length = 176
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK 259
P +G PG+GK+ + R L + L VG+L TD E + + + G + RRI+
Sbjct: 3 PKAVLVGLPGSGKSTIGRRLAKALG-VGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIE 61
Query: 260 E 260
E
Sbjct: 62 E 62
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 21/95 (22%)
Query: 41 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANN--------------GMTPLHLSVWYSI 86
G+T LH+A + LL+ +GA ++A AN G PL L+
Sbjct: 101 GQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAAC--- 157
Query: 87 RSEDYATVKTLLEYN---ADCSAKDNEGKTPLDHL 118
+ A VK LL+ + AD SA+D+ G T L L
Sbjct: 158 -TNQLAIVKFLLQNSWQPADISARDSVGNTVLHAL 191
>pdb|3CL6|A Chain A, Crystal Structure Of Puue Allantoinase
pdb|3CL6|B Chain B, Crystal Structure Of Puue Allantoinase
pdb|3CL7|A Chain A, Crystal Structure Of Puue Allantoinase In Complex With
Hydantoin
pdb|3CL7|B Chain B, Crystal Structure Of Puue Allantoinase In Complex With
Hydantoin
pdb|3CL8|A Chain A, Crystal Structure Of Puue Allantoinase Complexed With Aca
pdb|3CL8|B Chain B, Crystal Structure Of Puue Allantoinase Complexed With Aca
Length = 308
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 234 VTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAY 272
+TE+ +G + G TGP TRR + E EGG L+ + Y
Sbjct: 152 LTELTGERPLGWYTGRTGPNTRRLVME-EGGFLYDCDTY 189
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 192 LKVGARRPPHMAFLGNPGTGKTMVARILGRLL 223
+K A + H+ +G PGTGK+M+ + + LL
Sbjct: 53 IKTAANQKRHVLLIGEPGTGKSMLGQAMAELL 84
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 93 TVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137
TV+ LLE AD +A + G+ P+ + GSA++ ELLL H E
Sbjct: 27 TVRQLLEAGADPNALNRFGRRPIQVMMM--GSAQVAELLLLHGAE 69
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
Length = 368
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 188 KALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFV 247
K L K+ + P + G GTGK +VAR++ R G + + E
Sbjct: 142 KRLIPKIAKSKAP-VLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELF 200
Query: 248 GH-----TGPKTRR--RIKEAEGGILFVDEAYRL 274
GH TG TR+ +++ A+ G LF+DE L
Sbjct: 201 GHEKGAFTGALTRKKGKLELADQGTLFLDEVGEL 234
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
T LH +A YN+ + +K LL+ + + N GET L +A K E +LL
Sbjct: 209 TALHYAALYNQPDCLKLLLK----GRALVGTVNEAGETALDIARKKHHKECEELLE---- 260
Query: 66 FIEAKANNGMTPLHLSVWYSIRSED 90
+A+A PLH+ + I +E+
Sbjct: 261 --QAQAGTFAFPLHVDYSWVISTEN 283
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 8 LHVSAGYNKA-EIVKSLLEWPGNDK--VELEAQNMY--GETPLHMAAKNGCNEAAKLLLA 62
L++S G N ++ + E GN + + +++Y G+T LH+A + C +LL+A
Sbjct: 53 LNLSNGRNDTIPVLLDIAERTGNMREFINSPFRDIYYRGQTALHIAIERRCKHYVELLVA 112
Query: 63 HGAFIEAKA 71
GA + A+A
Sbjct: 113 QGADVHAQA 121
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 14/82 (17%)
Query: 194 VGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD-RVTEVQRTDLVGEFVGHTGP 252
+G +P + G PGTGKT++AR + TD + V +LV +++G G
Sbjct: 177 LGIAQPKGVILYGPPGTGKTLLARAVAH--------HTDCKFIRVSGAELVQKYIGE-GS 227
Query: 253 KTRRRI----KEAEGGILFVDE 270
+ R + +E I+F+DE
Sbjct: 228 RMVRELFVMAREHAPSIIFMDE 249
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE-TPLHMAAKNGCNEAAKLLLA 62
+T L AG + V+ L E G D L+ ++M G T LHMAA E + L+
Sbjct: 77 GRTALLFVAGLGSDKCVRLLAE-AGAD---LDHRDMRGGLTALHMAAGYVRPEVVEALVE 132
Query: 63 HGAFIEAKANNGMTPLHLS 81
GA IE + G+T L L+
Sbjct: 133 LGADIEVEDERGLTALELA 151
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 1 MQMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 48
M+ T LH++AGY + E+V++L+E G D +E ++ G T L +A
Sbjct: 108 MRGGLTALHMAAGYVRPEVVEALVE-LGAD---IEVEDERGLTALELA 151
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 5/69 (7%)
Query: 8 LHVSAGYNKA-EIVKSLLEWPGNDK--VELEAQNMY--GETPLHMAAKNGCNEAAKLLLA 62
L++SAG N I+ + E GN + + +++Y G+T LH+A + C +LL+
Sbjct: 55 LNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVE 114
Query: 63 HGAFIEAKA 71
GA + A+A
Sbjct: 115 KGADVHAQA 123
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA 65
T LH +A YN+ + +K LL+ + + N GET L +A K E +LL
Sbjct: 228 TALHYAALYNQPDCLKLLLK----GRALVGTVNEAGETALDIARKKHHKECEELL----- 278
Query: 66 FIEAKANNGMTPLHLSVWYSIRSE 89
+A+A PLH+ + I +E
Sbjct: 279 -EQAQAGTFAFPLHVDYSWVISTE 301
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 43 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA 102
TPL A A + LL +GA + + G PLH + L+ A
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG----HTGLACLFLKRGA 292
Query: 103 DCSAKDNEGKTPL 115
D A+D+EG+ PL
Sbjct: 293 DLGARDSEGRDPL 305
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 94 VKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137
V+ LLE A+ +A ++ G+ P+ + G SA++ ELLL H E
Sbjct: 28 VRALLEAGANPNAPNSYGRRPIQVMMMG--SARVAELLLLHGAE 69
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGE-TPLHMAAKNGCNEAAKLLLA 62
+T L AG + V+ L E G D L+ ++M G T LHMAA E + L+
Sbjct: 76 GRTALLFVAGLGSDKCVRLLAE-AGAD---LDHRDMRGGLTALHMAAGYVRPEVVEALVE 131
Query: 63 HGAFIEAKANNGMTPLHLS 81
GA IE + G+T L L+
Sbjct: 132 LGADIEVEDERGLTALELA 150
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 1 MQMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMA 48
M+ T LH++AGY + E+V++L+E ++E ++ G T L +A
Sbjct: 107 MRGGLTALHMAAGYVRPEVVEALVEL----GADIEVEDERGLTALELA 150
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 43 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA 102
TPL A A + LL +GA + + G PLH + L+ A
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG----HTGLACLFLKRGA 292
Query: 103 DCSAKDNEGKTPL 115
D A+D+EG+ PL
Sbjct: 293 DLGARDSEGRDPL 305
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 43 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNA 102
TPL A A + LL +GA + + G PLH ++ L+ A
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLH----HATILGHTGLACLFLKRGA 292
Query: 103 DCSAKDNEGKTPL 115
D A+D+EG+ PL
Sbjct: 293 DLGARDSEGRDPL 305
>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm:
Functional Insights For An Aaa+ Hexameric Helicase
Length = 595
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 20/136 (14%)
Query: 201 HMAFLGNPGTGKT----MVARILGRLLYMVGILPTDR--VTEVQRTDLVGEFVGHTGPKT 254
H+ +G+PGT K+ ++R+ R +Y G T V R GE+ G
Sbjct: 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGA-- 386
Query: 255 RRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALE-EIMSVMDGGKVVVIFAGYSEPM 313
+ A+GGI +DE ++ + +D+ EA+E + +S+ G I A +
Sbjct: 387 ---LVLADGGIAVIDEIDKM----RDEDRVAIHEAMEQQTVSIAKAG----IVAKLNARA 435
Query: 314 KRVIASNEGFCRRVTK 329
+ A N F R +++
Sbjct: 436 AVIAAGNPKFGRYISE 451
>pdb|2ZAD|A Chain A, Crystal Structure Of Muconate Cycloisomerase From
Thermotoga Maritima Msb8
pdb|2ZAD|B Chain B, Crystal Structure Of Muconate Cycloisomerase From
Thermotoga Maritima Msb8
pdb|2ZAD|C Chain C, Crystal Structure Of Muconate Cycloisomerase From
Thermotoga Maritima Msb8
pdb|2ZAD|D Chain D, Crystal Structure Of Muconate Cycloisomerase From
Thermotoga Maritima Msb8
Length = 345
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 257 RIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVV 304
R+KEA+ +E +R+I ++ ++ IEA+EEI V G K +V
Sbjct: 143 RVKEAKK---IFEEGFRVIKIKVGENLKEDIEAVEEIAKVTRGAKYIV 187
>pdb|3DFY|A Chain A, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|B Chain B, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|C Chain C, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|D Chain D, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|E Chain E, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|F Chain F, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|G Chain G, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|H Chain H, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|I Chain I, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|J Chain J, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|K Chain K, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|L Chain L, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|M Chain M, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|N Chain N, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|O Chain O, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DFY|P Chain P, Crystal Structure Of Apo Dipeptide Epimerase From
Thermotoga Maritima
pdb|3DEQ|A Chain A, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Leu Dipeptide
pdb|3DEQ|B Chain B, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Leu Dipeptide
pdb|3DEQ|C Chain C, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Leu Dipeptide
pdb|3DEQ|D Chain D, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Leu Dipeptide
pdb|3DER|A Chain A, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Lys Dipeptide
pdb|3DER|B Chain B, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Lys Dipeptide
pdb|3DER|C Chain C, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Lys Dipeptide
pdb|3DER|D Chain D, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Lys Dipeptide
pdb|3DES|A Chain A, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Phe Dipeptide
pdb|3DES|B Chain B, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Phe Dipeptide
pdb|3DES|C Chain C, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Phe Dipeptide
pdb|3DES|D Chain D, Crystal Structure Of Dipeptide Epimerase From Thermotoga
Maritima Complexed With L-Ala-L-Phe Dipeptide
Length = 345
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 257 RIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVV 304
R+KEA+ +E +R+I ++ ++ IEA+EEI V G K +V
Sbjct: 143 RVKEAKK---IFEEGFRVIKIKVGENLKEDIEAVEEIAKVTRGAKYIV 187
>pdb|3H5T|A Chain A, Crystal Structure Of A Transcriptional Regulator, Lacl
Family Protein From Corynebacterium Glutamicum
Length = 366
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 66 FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSA 106
FIEA + G P+ + W + R ++ K LLE + D +A
Sbjct: 232 FIEAGIDPGTVPI-MECWINNRQHNFEVAKELLETHPDLTA 271
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 12/76 (15%)
Query: 201 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE 260
H+ F G G GKT +A I+ + T ++++ + + +
Sbjct: 57 HILFSGPAGLGKTTLANIIS--YEXSANIKTTAAPXIEKSGDLAAILTNL---------- 104
Query: 261 AEGGILFVDEAYRLIP 276
+EG ILF+DE +RL P
Sbjct: 105 SEGDILFIDEIHRLSP 120
>pdb|1FW8|A Chain A, Circularly Permuted Phosphoglycerate Kinase From Yeast:
Pgk P72
Length = 416
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 119 SNGPGSAKLRELLLWHSEEQRKRRA-LEACSETKAKMDELENELSNIVGLH--------- 168
++ PGS L E L +H EE+ R+ + +K + + +ELS++ ++
Sbjct: 38 ASAPGSVILLENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYINDAFGTAH 97
Query: 169 -----ELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLG 206
+ L + A G LL++ K G + P +A LG
Sbjct: 98 RAHSSMVGFDLPQRAAGFLLEKELKYFGKALENPTRPFLAILG 140
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 196 ARRPP--HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPK 253
AR+ P H+ G PG GKT +A ++ + +G+ RVT + G+
Sbjct: 33 ARKEPLEHLLLFGPPGLGKTTLAHVIA---HELGV--NLRVTSGPAIEKPGDLAAILANS 87
Query: 254 TRRRIKEAEGGILFVDEAYRL 274
EG ILF+DE +RL
Sbjct: 88 LE------EGDILFIDEIHRL 102
>pdb|1QPG|A Chain A, 3-Phosphoglycerate Kinase, Mutation R65q
Length = 415
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 119 SNGPGSAKLRELLLWHSEEQRKRRA-LEACSETKAKMDELENELSNIVGLH--------- 168
++ PGS L E L +H EE+ R+ + +K + + +ELS++ ++
Sbjct: 108 ASAPGSVILLENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYINDAFGTAH 167
Query: 169 -----ELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLG 206
+ L + A G LL++ K G + P +A LG
Sbjct: 168 RAHSSMVGFDLPQRAAGFLLEKELKYFGKALENPTRPFLAILG 210
>pdb|3PGK|A Chain A, The Structure Of Yeast Phosphoglycerate Kinase At 0.25 Nm
Resolution
Length = 416
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 119 SNGPGSAKLRELLLWHSEEQRKRRA-LEACSETKAKMDELENELSNIVGLH--------- 168
++ PGS L E L +H EE+ R+ + +K + + +ELS++ ++
Sbjct: 109 ASAPGSVILLENLRYHIEEEGSRKVDGQKVKASKEDVQKFRHELSSLADVYINDAFGTAH 168
Query: 169 -----ELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLG 206
+ L + A G LL++ K G + P +A LG
Sbjct: 169 RAHSSMVGFDLPQRAAGFLLEKELKYFGKALENPTRPFLAILG 211
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 22/157 (14%)
Query: 162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGR 221
S++ G + +LR+ + LL R A +G P + G PGTGKT+ AR +
Sbjct: 209 SDVGGCKDQIEKLREVVELPLLSPERFA---TLGIDPPKGILLYGPPGTGKTLCARAVAN 265
Query: 222 LLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQ 278
I V ++LV ++VG R + A + I+F DE +
Sbjct: 266 RTDATFI-------RVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDE-IDAVGGA 317
Query: 279 KADDKDYGIEALE----EIMSVMDG----GKVVVIFA 307
+ DD G ++ E+++ +DG G + V+FA
Sbjct: 318 RFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFA 354
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 196 ARRPP--HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPK 253
AR+ P H+ G PG GKT +A ++ + +G+ RVT + G+
Sbjct: 33 ARKEPLEHLLLFGPPGLGKTTLAHVIA---HELGV--NLRVTSGPAIEKPGDLAAILANS 87
Query: 254 TRRRIKEAEGGILFVDEAYRL 274
EG ILF+DE +RL
Sbjct: 88 LE------EGDILFIDEIHRL 102
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 194 VGARRPPHMAFLGNPGTGKTMVAR 217
+GA+ P + +G PGTGKT++A+
Sbjct: 39 LGAKIPKGVLLVGPPGTGKTLLAK 62
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 196 ARRPP--HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPK 253
AR+ P H+ G PG GKT +A ++ + +G+ RVT + G+
Sbjct: 33 ARKEPLEHLLLFGPPGLGKTTLAHVIA---HELGV--NLRVTSGPAIEKPGDLAAILANS 87
Query: 254 TRRRIKEAEGGILFVDEAYRL 274
EG ILF+DE +RL
Sbjct: 88 LE------EGDILFIDEIHRL 102
>pdb|1KB2|A Chain A, Crystal Structure Of Vdr Dna-Binding Domain Bound To Mouse
Osteopontin (Spp) Response Element
pdb|1KB2|B Chain B, Crystal Structure Of Vdr Dna-Binding Domain Bound To Mouse
Osteopontin (Spp) Response Element
pdb|1KB4|A Chain A, Crystal Structure Of Vdr Dna-Binding Domain Bound To A
Canonical Direct Repeat With Three Base Pair Spacer
(Dr3) Response Element
pdb|1KB4|B Chain B, Crystal Structure Of Vdr Dna-Binding Domain Bound To A
Canonical Direct Repeat With Three Base Pair Spacer
(Dr3) Response Element
pdb|1KB6|A Chain A, Crystal Structure Of Vdr Dna-Binding Domain Bound To Rat
Osteocalcin (Oc) Response Element
pdb|1KB6|B Chain B, Crystal Structure Of Vdr Dna-Binding Domain Bound To Rat
Osteocalcin (Oc) Response Element
Length = 110
Score = 28.5 bits (62), Expect = 7.5, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 100 YNADCS-AKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRRALEACSETKAKMDELE 158
+N DC KDN L ++E +L E QRKR + E +A D L
Sbjct: 47 FNGDCRITKDNRRHCQACRLKRCVDIGMMKEFILTDEEVQRKREMILKRKEEEALKDSLR 106
Query: 159 NELS 162
+LS
Sbjct: 107 PKLS 110
>pdb|2BJV|A Chain A, Crystal Structure Of Pspf(1-275) R168a Mutant
Length = 265
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 205 LGNPGTGKTMVARILGRLLYMV----GILPTDRVTEVQRTDLVGEFVGH-----TGPKTR 255
+G GTGK ++A RL Y+ G + + L E GH TG + R
Sbjct: 35 IGERGTGKELIA---SRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKR 91
Query: 256 R--RIKEAEGGILFVDE 270
R + A+GG LF+DE
Sbjct: 92 HPGRFERADGGTLFLDE 108
>pdb|2C9C|A Chain A, Structural Basis Of The Nucleotide Driven Conformational
Changes In The Aaa Domain Of Transcription Activator
Pspf
Length = 265
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 205 LGNPGTGKTMVARILGRLLYMV----GILPTDRVTEVQRTDLVGEFVGH-----TGPKTR 255
+G GTGK ++A RL Y+ G + + L E GH TG + R
Sbjct: 35 IGERGTGKELIA---SRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKR 91
Query: 256 R--RIKEAEGGILFVDE 270
R + A+GG LF+DE
Sbjct: 92 HPGRFERADGGTLFLDE 108
>pdb|2BJW|A Chain A, Pspf Aaa Domain
pdb|2C96|A Chain A, Structural Basis Of The Nucleotide Driven Conformational
Changes In The Aaa Domain Of Transcription Activator
Pspf
pdb|2C98|A Chain A, Structural Basis Of The Nucleotide Driven Conformational
Changes In The Aaa Domain Of Transcription Activator
Pspf
pdb|2C99|A Chain A, Structural Basis Of The Nucleotide Driven Conformational
Changes In The Aaa Domain Of Transcription Activator
Pspf
Length = 265
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 205 LGNPGTGKTMVARILGRLLYMV----GILPTDRVTEVQRTDLVGEFVGH-----TGPKTR 255
+G GTGK ++A RL Y+ G + + L E GH TG + R
Sbjct: 35 IGERGTGKELIA---SRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKR 91
Query: 256 R--RIKEAEGGILFVDE 270
R + A+GG LF+DE
Sbjct: 92 HPGRFERADGGTLFLDE 108
>pdb|2VII|A Chain A, Pspf1-275-mg-amp
Length = 259
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 205 LGNPGTGKTMVARILGRLLYMV----GILPTDRVTEVQRTDLVGEFVGH-----TGPKTR 255
+G GTGK ++A RL Y+ G + + L E GH TG + R
Sbjct: 35 IGERGTGKELIA---SRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKR 91
Query: 256 R--RIKEAEGGILFVDE 270
R + A+GG LF+DE
Sbjct: 92 HPGRFERADGGTLFLDE 108
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 201 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRR--- 257
++ +G G+GKT++A L RLL + + T + VGE V + K ++
Sbjct: 53 NILLIGPTGSGKTLLAETLARLLDVPFTMAD--ATTLTEAGYVGEDVENIIQKLLQKCDY 110
Query: 258 -IKEAEGGILFVDE 270
+++A+ GI+++D+
Sbjct: 111 DVQKAQRGIVYIDQ 124
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 16/84 (19%)
Query: 193 KVGARRPPHMAFLGNPGTGKTMVARIL---GRLLYMVGILPTDRVTEVQRTDLVGEFVGH 249
++GAR P + +G PG GKT +AR + R+ ++ +D V FVG
Sbjct: 58 EMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITA----------SGSDFVEMFVGV 107
Query: 250 TGPKTRRRIKEAE---GGILFVDE 270
+ R + A+ I+F+DE
Sbjct: 108 GAARVRDLFETAKRHAPCIVFIDE 131
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 201 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRR--- 257
++ +G G+GKT++A L RLL + + T + VGE V + K ++
Sbjct: 53 NILLIGPTGSGKTLLAETLARLLDVPFTMAD--ATTLTEAGYVGEDVENIIQKLLQKCDY 110
Query: 258 -IKEAEGGILFVDE 270
+++A+ GI+++D+
Sbjct: 111 DVQKAQRGIVYIDQ 124
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 201 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRR---- 256
++ +G G+GKT++A+ L + L + I +D T + VGE V + + +
Sbjct: 74 NILLIGPTGSGKTLMAQTLAKHLD-IPIAISD-ATSLTEAGYVGEDVENILTRLLQASDW 131
Query: 257 RIKEAEGGILFVDEAYRL 274
+++A+ GI+F+DE ++
Sbjct: 132 NVQKAQKGIVFIDEIDKI 149
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 21/161 (13%)
Query: 192 LKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHT 250
L G R P + G PG GKT++AR V + + L ++VG
Sbjct: 46 LFTGLRAPAKGLLLFGPPGNGKTLLAR-------AVATECSATFLNISAASLTSKYVGD- 97
Query: 251 GPKTRRRI----KEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------G 300
G K R + + + I+F+DE L+ + + + + E + DG G
Sbjct: 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157
Query: 301 KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEEL 341
+V+ A + P + A+ F +RV + D + EL
Sbjct: 158 DRIVVLAATNRPQELDEAALRRFTKRV--YVSLPDEQTREL 196
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 22/157 (14%)
Query: 191 GLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHT 250
GL+ AR + G PG GKTM+A+ V + L ++VG
Sbjct: 143 GLRAPAR---GLLLFGPPGNGKTMLAK-------AVAAESNATFFNISAASLTSKYVGE- 191
Query: 251 GPKTRRRI----KEAEGGILFVDEAYRLIPMQKADDKDYG----IEALEEIMSVMDGGKV 302
G K R + +E + I+F+D+ L+ ++ + D E L E V G
Sbjct: 192 GEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDD 251
Query: 303 VVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSE 339
V+ G + R +E RR K + + N E
Sbjct: 252 RVLVMGATN---RPQELDEAVLRRFIKRVYVSLPNEE 285
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 16/84 (19%)
Query: 193 KVGARRPPHMAFLGNPGTGKTMVARIL---GRLLYMVGILPTDRVTEVQRTDLVGEFVGH 249
++GAR P + +G PG GKT +AR + R+ ++ +D V FVG
Sbjct: 67 EMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFIT----------ASGSDFVEMFVGV 116
Query: 250 TGPKTRRRIKEAE---GGILFVDE 270
+ R + A+ I+F+DE
Sbjct: 117 GAARVRDLFETAKRHAPCIVFIDE 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,632,899
Number of Sequences: 62578
Number of extensions: 531228
Number of successful extensions: 2134
Number of sequences better than 100.0: 188
Number of HSP's better than 100.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 63
Number of HSP's that attempted gapping in prelim test: 1423
Number of HSP's gapped (non-prelim): 423
length of query: 438
length of database: 14,973,337
effective HSP length: 102
effective length of query: 336
effective length of database: 8,590,381
effective search space: 2886368016
effective search space used: 2886368016
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)