Query 013706
Match_columns 438
No_of_seqs 366 out of 3259
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 06:34:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013706.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013706hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1222 RPT1 ATP-dependent 26S 100.0 1.1E-42 2.4E-47 311.1 14.7 236 158-435 147-394 (406)
2 KOG0730 AAA+-type ATPase [Post 100.0 1.6E-40 3.5E-45 318.5 16.5 241 155-435 427-676 (693)
3 KOG0738 AAA+-type ATPase [Post 100.0 1.9E-39 4.2E-44 292.0 15.5 246 159-437 209-473 (491)
4 KOG0733 Nuclear AAA ATPase (VC 100.0 1.3E-38 2.9E-43 301.2 15.9 249 156-435 505-771 (802)
5 CHL00181 cbbX CbbX; Provisiona 100.0 2.1E-36 4.6E-41 278.0 25.4 264 152-429 12-282 (287)
6 TIGR02880 cbbX_cfxQ probable R 100.0 3E-36 6.5E-41 277.5 25.6 263 153-429 12-281 (284)
7 KOG0733 Nuclear AAA ATPase (VC 100.0 2.9E-37 6.3E-42 292.1 15.5 218 158-409 186-416 (802)
8 KOG0736 Peroxisome assembly fa 100.0 3.5E-37 7.6E-42 298.5 14.6 246 157-435 667-934 (953)
9 TIGR02881 spore_V_K stage V sp 100.0 2.3E-35 4.9E-40 270.2 24.6 253 159-426 3-261 (261)
10 COG1223 Predicted ATPase (AAA+ 100.0 9.4E-36 2E-40 254.7 14.9 231 159-435 118-357 (368)
11 KOG0734 AAA+-type ATPase conta 100.0 1.8E-35 3.9E-40 275.8 14.5 233 158-433 300-541 (752)
12 KOG0739 AAA+-type ATPase [Post 100.0 5.3E-35 1.2E-39 254.7 10.2 184 154-353 125-316 (439)
13 KOG0728 26S proteasome regulat 100.0 8.9E-34 1.9E-38 241.4 14.9 235 159-435 144-390 (404)
14 KOG0727 26S proteasome regulat 100.0 5.2E-34 1.1E-38 243.1 13.4 235 158-434 151-397 (408)
15 KOG0737 AAA+-type ATPase [Post 100.0 4.3E-34 9.3E-39 257.6 13.3 259 153-435 83-361 (386)
16 KOG0652 26S proteasome regulat 100.0 9.7E-33 2.1E-37 236.4 12.4 236 158-435 167-414 (424)
17 COG0464 SpoVK ATPases of the A 100.0 2.5E-32 5.5E-37 273.0 17.4 240 158-436 238-486 (494)
18 KOG0735 AAA+-type ATPase [Post 100.0 3.3E-32 7.1E-37 261.8 14.6 217 159-408 664-889 (952)
19 CHL00195 ycf46 Ycf46; Provisio 100.0 2.4E-31 5.2E-36 259.3 19.6 235 159-437 225-467 (489)
20 KOG0731 AAA+-type ATPase conta 100.0 2.5E-31 5.5E-36 263.2 18.6 234 158-433 307-553 (774)
21 PTZ00454 26S protease regulato 100.0 2.8E-31 6.1E-36 253.8 17.7 236 158-435 141-388 (398)
22 KOG0726 26S proteasome regulat 100.0 2.7E-32 5.9E-37 237.1 9.2 235 158-434 181-427 (440)
23 KOG0729 26S proteasome regulat 100.0 3.6E-32 7.7E-37 233.7 8.9 235 159-435 174-420 (435)
24 TIGR01243 CDC48 AAA family ATP 100.0 3.6E-31 7.9E-36 275.3 16.4 246 158-436 449-713 (733)
25 PRK03992 proteasome-activating 100.0 9.2E-31 2E-35 251.9 17.9 237 158-436 127-375 (389)
26 PTZ00361 26 proteosome regulat 100.0 2.2E-30 4.8E-35 248.8 16.2 235 159-435 180-426 (438)
27 TIGR03689 pup_AAA proteasome A 100.0 8E-30 1.7E-34 248.0 19.8 260 158-432 178-477 (512)
28 KOG0741 AAA+-type ATPase [Post 100.0 2.3E-31 5E-36 248.2 7.9 218 193-435 250-492 (744)
29 COG0465 HflB ATP-dependent Zn 100.0 3.5E-30 7.6E-35 251.0 15.9 235 157-434 145-391 (596)
30 TIGR01241 FtsH_fam ATP-depende 100.0 3.5E-29 7.5E-34 249.5 18.4 234 158-434 51-296 (495)
31 CHL00176 ftsH cell division pr 100.0 3.9E-28 8.3E-33 244.2 19.3 232 159-433 180-423 (638)
32 KOG0740 AAA+-type ATPase [Post 100.0 9.9E-29 2.1E-33 231.4 13.7 245 159-436 150-407 (428)
33 KOG0651 26S proteasome regulat 100.0 1.2E-28 2.6E-33 216.5 9.8 233 159-433 129-373 (388)
34 PLN00020 ribulose bisphosphate 100.0 1.4E-27 3.1E-32 217.9 16.9 186 194-408 143-355 (413)
35 TIGR01242 26Sp45 26S proteasom 100.0 8.5E-28 1.8E-32 230.8 16.3 233 159-433 119-363 (364)
36 KOG0732 AAA+-type ATPase conta 99.9 6.1E-27 1.3E-31 238.1 16.7 250 159-435 262-527 (1080)
37 COG2256 MGS1 ATPase related to 99.9 9.8E-27 2.1E-31 212.4 13.3 192 159-404 21-220 (436)
38 KOG4412 26S proteasome regulat 99.9 1.7E-27 3.6E-32 192.1 7.3 132 2-141 36-168 (226)
39 KOG0730 AAA+-type ATPase [Post 99.9 1.2E-26 2.5E-31 223.4 14.3 209 162-404 184-401 (693)
40 PRK10733 hflB ATP-dependent me 99.9 6.8E-26 1.5E-30 230.8 19.3 237 156-435 146-394 (644)
41 TIGR01243 CDC48 AAA family ATP 99.9 5.9E-26 1.3E-30 236.4 17.6 245 159-436 175-438 (733)
42 KOG4412 26S proteasome regulat 99.9 1.2E-25 2.5E-30 181.5 9.5 133 2-142 70-202 (226)
43 PF05496 RuvB_N: Holliday junc 99.9 5.9E-25 1.3E-29 188.4 11.5 185 159-401 21-226 (233)
44 CHL00206 ycf2 Ycf2; Provisiona 99.9 9.1E-25 2E-29 231.5 14.2 199 193-434 1624-1878(2281)
45 KOG2028 ATPase related to the 99.9 1.1E-22 2.5E-27 182.6 13.5 222 159-432 135-367 (554)
46 KOG0744 AAA+-type ATPase [Post 99.9 2.9E-22 6.2E-27 177.3 13.9 199 148-353 128-344 (423)
47 COG2255 RuvB Holliday junction 99.9 1.6E-21 3.4E-26 170.2 16.1 172 158-380 22-214 (332)
48 COG0466 Lon ATP-dependent Lon 99.9 1.2E-21 2.7E-26 190.8 16.2 239 154-431 314-582 (782)
49 COG3829 RocR Transcriptional r 99.9 2.5E-22 5.5E-27 190.8 10.7 204 158-403 241-478 (560)
50 COG2204 AtoC Response regulato 99.9 8.5E-23 1.8E-27 194.7 6.8 207 160-405 139-375 (464)
51 COG3604 FhlA Transcriptional r 99.9 6.7E-22 1.5E-26 185.3 11.7 210 154-404 215-456 (550)
52 TIGR02639 ClpA ATP-dependent C 99.9 6.7E-21 1.5E-25 198.0 18.9 242 160-433 180-429 (731)
53 TIGR00763 lon ATP-dependent pr 99.9 1.2E-20 2.6E-25 197.1 20.1 240 154-430 311-583 (775)
54 TIGR02902 spore_lonB ATP-depen 99.9 4.4E-21 9.5E-26 191.4 16.0 213 159-431 62-330 (531)
55 PRK05201 hslU ATP-dependent pr 99.9 2.1E-20 4.6E-25 175.3 19.1 164 262-434 249-433 (443)
56 KOG2004 Mitochondrial ATP-depe 99.9 3.8E-21 8.2E-26 186.4 14.4 211 163-410 412-651 (906)
57 KOG0742 AAA+-type ATPase [Post 99.9 2.9E-21 6.3E-26 175.9 11.8 211 160-398 353-586 (630)
58 PRK05342 clpX ATP-dependent pr 99.9 3.5E-20 7.7E-25 177.9 19.7 259 152-428 60-400 (412)
59 TIGR00390 hslU ATP-dependent p 99.9 6.2E-20 1.3E-24 172.1 19.8 164 262-434 247-431 (441)
60 PRK13342 recombination factor 99.8 1.5E-20 3.3E-25 183.3 15.4 184 159-402 9-202 (413)
61 COG1221 PspF Transcriptional r 99.8 6.9E-21 1.5E-25 178.5 11.7 208 158-404 74-309 (403)
62 KOG0509 Ankyrin repeat and DHH 99.8 2.7E-21 5.8E-26 185.3 9.0 131 2-141 76-207 (600)
63 PHA02791 ankyrin-like protein; 99.8 9.8E-21 2.1E-25 173.7 12.0 126 3-139 60-187 (284)
64 PRK13341 recombination factor 99.8 3.2E-20 6.8E-25 189.5 16.7 191 159-403 25-224 (725)
65 TIGR00635 ruvB Holliday juncti 99.8 8.2E-20 1.8E-24 172.1 17.2 187 160-404 2-209 (305)
66 PHA02741 hypothetical protein; 99.8 1.8E-20 3.8E-25 160.4 11.4 130 2-136 19-156 (169)
67 PRK00080 ruvB Holliday junctio 99.8 9.1E-20 2E-24 172.8 17.0 208 159-433 22-250 (328)
68 PHA02859 ankyrin repeat protei 99.8 2.3E-20 4.9E-25 165.1 11.2 132 3-140 50-187 (209)
69 PHA02791 ankyrin-like protein; 99.8 3.4E-20 7.4E-25 170.1 12.4 123 2-135 28-151 (284)
70 PRK11034 clpA ATP-dependent Cl 99.8 2.2E-19 4.9E-24 184.1 18.9 237 160-432 184-432 (758)
71 TIGR02974 phageshock_pspF psp 99.8 3.5E-20 7.6E-25 174.2 11.2 203 164-404 1-233 (329)
72 KOG0509 Ankyrin repeat and DHH 99.8 9.4E-21 2E-25 181.6 7.3 131 3-142 111-242 (600)
73 PRK10787 DNA-binding ATP-depen 99.8 4E-19 8.6E-24 183.8 19.1 238 153-431 312-580 (784)
74 PRK11608 pspF phage shock prot 99.8 6.8E-20 1.5E-24 172.6 11.8 207 160-404 4-240 (326)
75 TIGR03345 VI_ClpV1 type VI sec 99.8 6.6E-19 1.4E-23 184.2 18.8 193 159-378 184-385 (852)
76 KOG0989 Replication factor C, 99.8 2.9E-19 6.3E-24 157.8 12.9 191 159-402 33-236 (346)
77 PHA02743 Viral ankyrin protein 99.8 1.2E-19 2.5E-24 154.6 9.8 131 2-141 18-157 (166)
78 TIGR01817 nifA Nif-specific re 99.8 8.6E-20 1.9E-24 184.2 10.5 205 160-404 194-428 (534)
79 PRK14956 DNA polymerase III su 99.8 8.1E-19 1.8E-23 168.7 16.4 189 159-403 15-229 (484)
80 COG1219 ClpX ATP-dependent pro 99.8 1.5E-18 3.2E-23 153.7 16.2 241 152-408 50-371 (408)
81 TIGR00382 clpX endopeptidase C 99.8 2.7E-18 5.9E-23 163.8 19.2 258 153-428 67-406 (413)
82 PF00004 AAA: ATPase family as 99.8 1.4E-19 3E-24 148.6 8.6 121 202-334 1-131 (132)
83 PHA02875 ankyrin repeat protei 99.8 3.6E-19 7.7E-24 175.2 12.7 127 3-138 67-194 (413)
84 PRK07003 DNA polymerase III su 99.8 2E-18 4.2E-23 172.1 17.5 189 159-404 13-228 (830)
85 KOG0508 Ankyrin repeat protein 99.8 1.4E-19 3E-24 166.8 8.3 126 3-137 83-208 (615)
86 PRK14962 DNA polymerase III su 99.8 1.3E-18 2.8E-23 170.2 15.2 189 159-403 11-225 (472)
87 PRK11034 clpA ATP-dependent Cl 99.8 3.1E-18 6.6E-23 175.8 18.5 219 156-405 451-716 (758)
88 PRK15424 propionate catabolism 99.8 5.2E-19 1.1E-23 174.8 11.4 206 160-403 217-464 (538)
89 PHA02878 ankyrin repeat protei 99.8 7.5E-19 1.6E-23 175.8 12.7 128 4-141 168-296 (477)
90 TIGR02329 propionate_PrpR prop 99.8 7.7E-19 1.7E-23 173.8 12.3 204 159-404 209-450 (526)
91 KOG0512 Fetal globin-inducing 99.8 8.6E-19 1.9E-23 140.9 9.3 121 6-133 65-185 (228)
92 PHA02878 ankyrin repeat protei 99.8 1.2E-18 2.6E-23 174.3 12.1 130 3-141 36-230 (477)
93 PRK14960 DNA polymerase III su 99.8 8.8E-18 1.9E-22 165.8 17.7 189 159-403 12-226 (702)
94 PHA02736 Viral ankyrin protein 99.8 5.1E-19 1.1E-23 149.2 7.9 129 2-137 15-151 (154)
95 PRK12323 DNA polymerase III su 99.8 8.4E-18 1.8E-22 165.6 17.2 187 159-402 13-231 (700)
96 CHL00095 clpC Clp protease ATP 99.8 2.5E-18 5.4E-23 180.8 14.3 172 160-351 177-356 (821)
97 PHA02874 ankyrin repeat protei 99.8 2.3E-18 4.9E-23 170.3 13.2 120 3-132 123-242 (434)
98 PRK10820 DNA-binding transcrip 99.8 1.6E-18 3.4E-23 173.3 11.9 208 158-404 200-437 (520)
99 TIGR02903 spore_lon_C ATP-depe 99.8 3.2E-18 6.8E-23 173.5 14.2 222 159-432 151-429 (615)
100 PRK06645 DNA polymerase III su 99.8 2E-17 4.4E-22 162.4 19.3 190 159-404 18-237 (507)
101 PRK11388 DNA-binding transcrip 99.8 1.2E-18 2.6E-23 179.7 10.9 205 160-404 323-554 (638)
102 PRK05022 anaerobic nitric oxid 99.8 4.9E-18 1.1E-22 169.8 14.9 207 160-405 185-421 (509)
103 PRK14949 DNA polymerase III su 99.8 9.2E-18 2E-22 170.5 16.8 187 159-402 13-226 (944)
104 PRK10865 protein disaggregatio 99.8 4.4E-18 9.5E-23 178.7 14.9 173 159-351 175-356 (857)
105 PRK14958 DNA polymerase III su 99.8 1.6E-17 3.4E-22 164.4 18.0 189 159-403 13-227 (509)
106 PHA02875 ankyrin repeat protei 99.8 2.6E-18 5.6E-23 169.0 12.4 128 3-139 34-162 (413)
107 PRK14964 DNA polymerase III su 99.8 1.8E-17 3.9E-22 161.4 17.9 190 159-404 10-225 (491)
108 PLN03025 replication factor C 99.8 1.5E-17 3.3E-22 156.9 16.6 183 159-401 10-205 (319)
109 COG0542 clpA ATP-binding subun 99.8 1.8E-17 3.8E-22 166.6 17.3 223 154-404 482-754 (786)
110 KOG0510 Ankyrin repeat protein 99.8 2E-18 4.2E-23 169.1 10.0 129 2-139 271-404 (929)
111 PHA02716 CPXV016; CPX019; EVM0 99.8 2E-18 4.3E-23 175.5 10.5 133 3-139 176-346 (764)
112 PHA02874 ankyrin repeat protei 99.8 5.5E-18 1.2E-22 167.6 13.4 133 3-140 67-218 (434)
113 PRK14961 DNA polymerase III su 99.8 1.8E-17 3.9E-22 158.8 16.5 189 159-403 13-227 (363)
114 PHA02884 ankyrin repeat protei 99.8 4.4E-18 9.5E-23 156.1 11.5 119 3-130 31-155 (300)
115 PHA02716 CPXV016; CPX019; EVM0 99.8 3.3E-18 7.1E-23 174.0 10.8 109 3-117 211-358 (764)
116 PHA03100 ankyrin repeat protei 99.8 5.6E-18 1.2E-22 170.1 12.4 131 2-141 139-279 (480)
117 KOG0502 Integral membrane anky 99.7 1.6E-18 3.6E-23 144.5 6.9 127 3-140 128-254 (296)
118 KOG0195 Integrin-linked kinase 99.7 2.1E-18 4.6E-23 149.6 7.7 126 3-137 33-158 (448)
119 PHA02859 ankyrin repeat protei 99.7 7E-18 1.5E-22 149.2 11.3 110 3-119 86-200 (209)
120 KOG0512 Fetal globin-inducing 99.7 2.8E-18 6.1E-23 137.9 7.6 112 2-121 95-207 (228)
121 PTZ00322 6-phosphofructo-2-kin 99.7 1.1E-17 2.5E-22 171.9 14.3 102 6-115 84-192 (664)
122 PHA02946 ankyin-like protein; 99.7 5.7E-18 1.2E-22 166.6 11.5 124 5-136 38-164 (446)
123 TIGR03346 chaperone_ClpB ATP-d 99.7 1.3E-17 2.8E-22 175.9 14.9 173 160-352 171-352 (852)
124 PRK07994 DNA polymerase III su 99.7 2.7E-17 5.9E-22 164.7 16.1 188 159-403 13-227 (647)
125 PRK08691 DNA polymerase III su 99.7 4.9E-17 1.1E-21 162.1 17.6 189 159-403 13-227 (709)
126 PRK14957 DNA polymerase III su 99.7 3.4E-17 7.3E-22 161.8 16.4 189 159-403 13-227 (546)
127 PRK15429 formate hydrogenlyase 99.7 2.2E-17 4.7E-22 171.4 15.8 210 157-405 371-610 (686)
128 KOG0508 Ankyrin repeat protein 99.7 8E-18 1.7E-22 155.3 11.0 121 3-133 116-236 (615)
129 PF12796 Ank_2: Ankyrin repeat 99.7 1.5E-17 3.3E-22 126.3 10.7 89 8-108 1-89 (89)
130 COG1220 HslU ATP-dependent pro 99.7 1.6E-16 3.4E-21 142.1 18.3 160 263-433 251-433 (444)
131 TIGR03420 DnaA_homol_Hda DnaA 99.7 7.7E-17 1.7E-21 145.1 16.9 186 198-430 37-225 (226)
132 PRK12402 replication factor C 99.7 1.3E-16 2.8E-21 152.7 18.6 189 159-401 12-231 (337)
133 KOG0502 Integral membrane anky 99.7 1.9E-17 4.2E-22 138.2 11.0 123 2-133 158-280 (296)
134 TIGR02639 ClpA ATP-dependent C 99.7 1.3E-16 2.8E-21 166.1 19.8 219 155-404 446-711 (731)
135 PHA03100 ankyrin repeat protei 99.7 1.2E-17 2.6E-22 167.8 11.0 129 2-139 104-244 (480)
136 PRK05563 DNA polymerase III su 99.7 2E-16 4.3E-21 158.7 19.5 189 159-403 13-227 (559)
137 PHA03095 ankyrin-like protein; 99.7 2.3E-17 5E-22 165.3 12.8 133 2-140 45-182 (471)
138 PRK14963 DNA polymerase III su 99.7 1.5E-16 3.3E-21 157.0 18.2 187 159-402 11-223 (504)
139 PTZ00112 origin recognition co 99.7 2.5E-16 5.4E-21 157.9 19.7 223 162-433 755-1006(1164)
140 PLN03192 Voltage-dependent pot 99.7 1.2E-17 2.6E-22 176.8 11.2 134 4-142 525-685 (823)
141 PRK14951 DNA polymerase III su 99.7 1.8E-16 4E-21 158.6 18.9 189 159-403 13-232 (618)
142 PRK14952 DNA polymerase III su 99.7 7.3E-17 1.6E-21 160.9 15.8 188 159-403 10-226 (584)
143 PHA02743 Viral ankyrin protein 99.7 3.2E-17 7E-22 139.6 10.9 104 2-113 55-163 (166)
144 PHA03095 ankyrin-like protein; 99.7 2.7E-17 5.8E-22 164.8 12.1 127 3-138 151-283 (471)
145 KOG0505 Myosin phosphatase, re 99.7 9.7E-18 2.1E-22 157.6 8.1 131 3-142 72-261 (527)
146 COG3283 TyrR Transcriptional r 99.7 5.9E-17 1.3E-21 145.8 12.7 208 158-404 200-432 (511)
147 PHA02798 ankyrin-like protein; 99.7 3E-17 6.5E-22 164.6 12.2 135 3-142 108-288 (489)
148 PRK14959 DNA polymerase III su 99.7 1.4E-16 3.1E-21 158.2 16.6 187 159-401 13-225 (624)
149 PRK04195 replication factor C 99.7 1.7E-16 3.7E-21 157.9 17.4 185 159-399 11-205 (482)
150 PRK07764 DNA polymerase III su 99.7 9.9E-17 2.1E-21 165.9 15.9 186 159-401 12-226 (824)
151 PHA02795 ankyrin-like protein; 99.7 3.6E-17 7.7E-22 156.0 11.3 125 5-137 150-287 (437)
152 KOG0745 Putative ATP-dependent 99.7 2.1E-16 4.6E-21 145.5 15.4 198 198-408 225-512 (564)
153 PRK14969 DNA polymerase III su 99.7 1.9E-16 4.1E-21 157.8 16.5 188 159-403 13-227 (527)
154 PRK00411 cdc6 cell division co 99.7 1E-15 2.2E-20 149.6 21.2 228 162-434 30-283 (394)
155 KOG0514 Ankyrin repeat protein 99.7 1.8E-17 3.9E-22 148.3 8.0 124 2-134 266-395 (452)
156 TIGR02928 orc1/cdc6 family rep 99.7 8.9E-16 1.9E-20 148.5 20.5 229 162-434 15-275 (365)
157 KOG0510 Ankyrin repeat protein 99.7 4.8E-17 1E-21 159.4 11.2 132 2-139 223-368 (929)
158 TIGR03346 chaperone_ClpB ATP-d 99.7 4.7E-16 1E-20 164.2 18.9 216 162-405 565-826 (852)
159 PHA02876 ankyrin repeat protei 99.7 5.8E-17 1.3E-21 169.2 11.3 128 4-138 341-469 (682)
160 PHA02946 ankyin-like protein; 99.7 7.9E-17 1.7E-21 158.5 11.4 130 2-139 103-236 (446)
161 PRK08451 DNA polymerase III su 99.7 1.2E-15 2.7E-20 149.9 19.3 190 159-404 11-226 (535)
162 PRK14965 DNA polymerase III su 99.7 4.4E-16 9.5E-21 157.0 16.6 190 159-404 13-228 (576)
163 PRK08903 DnaA regulatory inact 99.7 8E-16 1.7E-20 138.4 16.3 180 198-431 41-224 (227)
164 PRK09111 DNA polymerase III su 99.7 1.1E-15 2.5E-20 153.3 17.9 189 159-403 21-240 (598)
165 PRK10923 glnG nitrogen regulat 99.7 7.4E-17 1.6E-21 161.2 9.5 206 160-404 136-371 (469)
166 PHA02989 ankyrin repeat protei 99.7 1.7E-16 3.6E-21 159.4 11.8 136 2-142 106-286 (494)
167 PRK05896 DNA polymerase III su 99.7 4.5E-16 9.8E-21 153.8 14.5 189 159-403 13-227 (605)
168 COG1474 CDC6 Cdc6-related prot 99.7 3.9E-15 8.5E-20 141.1 20.2 225 164-434 19-266 (366)
169 TIGR02397 dnaX_nterm DNA polym 99.7 2.6E-15 5.5E-20 144.8 19.3 189 159-403 11-225 (355)
170 PHA02989 ankyrin repeat protei 99.7 1.5E-16 3.2E-21 159.9 11.1 131 3-139 68-212 (494)
171 TIGR02915 PEP_resp_reg putativ 99.7 2.2E-16 4.7E-21 156.8 12.1 206 160-405 137-373 (445)
172 TIGR02640 gas_vesic_GvpN gas v 99.7 1.9E-15 4.1E-20 138.3 17.3 133 198-349 20-198 (262)
173 PHA02798 ankyrin-like protein; 99.7 1.6E-16 3.5E-21 159.3 11.0 131 4-139 36-175 (489)
174 PHA02876 ankyrin repeat protei 99.7 1.9E-16 4.1E-21 165.4 11.6 131 2-140 271-403 (682)
175 PRK06647 DNA polymerase III su 99.7 1.6E-15 3.5E-20 151.6 17.6 189 159-403 13-227 (563)
176 COG2812 DnaX DNA polymerase II 99.7 7.3E-16 1.6E-20 149.6 14.6 197 159-405 13-229 (515)
177 PRK07133 DNA polymerase III su 99.7 1.9E-15 4.1E-20 152.4 18.0 194 159-402 15-225 (725)
178 PHA02544 44 clamp loader, smal 99.7 1.6E-15 3.5E-20 143.6 16.4 179 159-380 18-200 (316)
179 KOG0743 AAA+-type ATPase [Post 99.7 3.2E-16 6.8E-21 146.4 11.2 173 159-352 198-386 (457)
180 PRK06305 DNA polymerase III su 99.7 2.3E-15 5.1E-20 147.3 17.8 188 159-402 14-228 (451)
181 PHA02730 ankyrin-like protein; 99.7 3.9E-16 8.4E-21 156.1 12.3 131 2-139 39-182 (672)
182 KOG0735 AAA+-type ATPase [Post 99.7 2.2E-15 4.9E-20 146.5 16.8 211 197-438 429-653 (952)
183 CHL00095 clpC Clp protease ATP 99.7 3.4E-15 7.5E-20 157.2 19.6 222 156-405 502-782 (821)
184 PRK14955 DNA polymerase III su 99.7 9.3E-16 2E-20 148.7 14.2 189 159-403 13-235 (397)
185 PRK08084 DNA replication initi 99.7 7.1E-15 1.5E-19 132.2 18.8 189 198-431 44-234 (235)
186 PRK14953 DNA polymerase III su 99.7 2.6E-15 5.7E-20 147.8 17.3 188 159-403 13-227 (486)
187 PHA02730 ankyrin-like protein; 99.7 4.1E-16 8.9E-21 155.9 11.7 127 3-137 377-523 (672)
188 KOG4177 Ankyrin [Cell wall/mem 99.7 1.8E-16 3.8E-21 164.7 9.2 130 3-137 473-631 (1143)
189 PRK14970 DNA polymerase III su 99.7 4E-15 8.8E-20 143.6 17.4 189 159-403 14-216 (367)
190 PRK00440 rfc replication facto 99.7 1.3E-15 2.8E-20 144.6 13.8 188 159-402 14-209 (319)
191 TIGR03345 VI_ClpV1 type VI sec 99.7 3.8E-15 8.2E-20 156.2 18.3 224 154-405 557-831 (852)
192 PRK06893 DNA replication initi 99.7 7.7E-15 1.7E-19 131.6 17.7 184 200-431 40-228 (229)
193 PHA02795 ankyrin-like protein; 99.6 4.3E-16 9.3E-21 148.7 9.9 130 2-142 114-251 (437)
194 PHA02736 Viral ankyrin protein 99.6 3.4E-16 7.3E-21 132.0 8.2 96 2-105 53-153 (154)
195 PRK10865 protein disaggregatio 99.6 3.1E-15 6.7E-20 157.3 16.8 226 162-415 568-840 (857)
196 PF01078 Mg_chelatase: Magnesi 99.6 9.1E-17 2E-21 137.4 4.2 152 160-340 1-206 (206)
197 KOG0991 Replication factor C, 99.6 9.6E-16 2.1E-20 130.2 10.1 189 159-401 24-219 (333)
198 PLN03192 Voltage-dependent pot 99.6 8.8E-16 1.9E-20 162.7 12.1 106 2-115 556-693 (823)
199 PHA02917 ankyrin-like protein; 99.6 1.2E-15 2.7E-20 156.0 12.3 128 2-139 30-165 (661)
200 COG0542 clpA ATP-binding subun 99.6 2.7E-15 5.9E-20 151.0 14.1 192 159-376 167-366 (786)
201 TIGR01818 ntrC nitrogen regula 99.6 1.1E-15 2.3E-20 152.7 10.5 203 162-404 134-367 (463)
202 TIGR00362 DnaA chromosomal rep 99.6 9.5E-15 2.1E-19 142.7 16.8 178 199-404 136-318 (405)
203 PRK14948 DNA polymerase III su 99.6 1.6E-14 3.5E-19 146.0 18.7 186 159-400 13-226 (620)
204 PRK11361 acetoacetate metaboli 99.6 1.2E-15 2.5E-20 152.3 9.6 204 161-404 142-376 (457)
205 PRK14954 DNA polymerase III su 99.6 1.3E-14 2.7E-19 146.0 16.9 189 159-403 13-235 (620)
206 PHA02917 ankyrin-like protein; 99.6 1.9E-15 4.2E-20 154.5 11.4 127 6-137 105-255 (661)
207 PRK13407 bchI magnesium chelat 99.6 2E-15 4.2E-20 141.0 10.4 160 160-350 6-217 (334)
208 cd00204 ANK ankyrin repeats; 99.6 6E-15 1.3E-19 119.2 12.0 121 2-131 5-125 (126)
209 PRK12422 chromosomal replicati 99.6 1.3E-14 2.9E-19 141.4 16.3 174 199-402 141-319 (445)
210 PRK00149 dnaA chromosomal repl 99.6 9.5E-15 2.1E-19 144.4 15.4 178 199-404 148-330 (450)
211 PRK14950 DNA polymerase III su 99.6 1.3E-14 2.7E-19 147.3 16.6 188 159-402 13-227 (585)
212 PF00158 Sigma54_activat: Sigm 99.6 1.5E-15 3.3E-20 128.4 8.2 124 164-316 1-149 (168)
213 PRK15115 response regulator Gl 99.6 1.6E-15 3.4E-20 150.6 9.5 181 198-404 156-367 (444)
214 CHL00081 chlI Mg-protoporyphyr 99.6 1E-14 2.2E-19 136.4 14.3 159 160-349 15-232 (350)
215 PHA02741 hypothetical protein; 99.6 4.4E-15 9.5E-20 127.0 10.2 94 3-104 59-158 (169)
216 PRK07940 DNA polymerase III su 99.6 2.7E-15 5.8E-20 143.7 9.7 158 160-347 3-187 (394)
217 KOG4177 Ankyrin [Cell wall/mem 99.6 1.1E-15 2.4E-20 158.9 7.6 131 3-142 439-603 (1143)
218 PRK14971 DNA polymerase III su 99.6 3.5E-14 7.6E-19 143.6 17.7 189 159-404 14-230 (614)
219 PHA02884 ankyrin repeat protei 99.6 7.4E-15 1.6E-19 134.9 11.5 118 3-137 69-187 (300)
220 PRK08727 hypothetical protein; 99.6 1.3E-13 2.9E-18 123.8 19.2 185 200-431 42-229 (233)
221 PRK14088 dnaA chromosomal repl 99.6 6.9E-14 1.5E-18 136.9 18.5 177 199-403 130-312 (440)
222 KOG4214 Myotrophin and similar 99.6 6.9E-15 1.5E-19 105.7 8.3 103 4-115 2-104 (117)
223 TIGR00368 Mg chelatase-related 99.6 5E-14 1.1E-18 138.7 16.4 153 160-341 190-396 (499)
224 KOG0736 Peroxisome assembly fa 99.6 1.4E-14 3.1E-19 142.2 11.9 207 198-435 430-655 (953)
225 TIGR02442 Cob-chelat-sub cobal 99.6 1.5E-14 3.2E-19 147.9 11.7 232 161-435 3-306 (633)
226 TIGR00870 trp transient-recept 99.6 6.3E-15 1.4E-19 155.3 9.2 123 3-134 127-279 (743)
227 TIGR00764 lon_rel lon-related 99.6 2.7E-14 5.8E-19 144.5 13.0 149 257-434 212-392 (608)
228 PRK05642 DNA replication initi 99.6 1.9E-13 4.1E-18 122.8 16.8 185 199-430 45-232 (234)
229 KOG0507 CASK-interacting adapt 99.6 3.6E-15 7.8E-20 145.4 5.9 123 3-134 48-170 (854)
230 COG1224 TIP49 DNA helicase TIP 99.6 1.7E-13 3.8E-18 123.7 16.0 133 263-433 292-432 (450)
231 TIGR02030 BchI-ChlI magnesium 99.5 8.2E-14 1.8E-18 130.5 14.3 157 161-349 3-219 (337)
232 PRK09087 hypothetical protein; 99.5 1.4E-13 3E-18 122.7 15.1 179 199-435 44-224 (226)
233 PRK06620 hypothetical protein; 99.5 7.9E-14 1.7E-18 123.1 13.1 167 200-430 45-213 (214)
234 PRK14087 dnaA chromosomal repl 99.5 3.1E-13 6.6E-18 132.5 17.9 181 199-404 141-327 (450)
235 KOG0195 Integrin-linked kinase 99.5 4.9E-15 1.1E-19 128.9 4.3 120 12-139 8-127 (448)
236 PRK10365 transcriptional regul 99.5 2.9E-14 6.2E-19 141.6 10.4 183 197-404 160-372 (441)
237 PRK14086 dnaA chromosomal repl 99.5 2.3E-13 5.1E-18 134.8 16.6 176 200-403 315-495 (617)
238 PHA02792 ankyrin-like protein; 99.5 3.1E-14 6.7E-19 141.1 10.3 108 4-119 339-451 (631)
239 KOG3676 Ca2+-permeable cation 99.5 2.5E-14 5.4E-19 141.3 9.0 124 2-134 182-330 (782)
240 smart00350 MCM minichromosome 99.5 8.1E-14 1.7E-18 139.2 12.2 242 162-435 203-506 (509)
241 PF07724 AAA_2: AAA domain (Cd 99.5 5.3E-14 1.2E-18 119.4 9.2 111 198-313 2-132 (171)
242 PF05673 DUF815: Protein of un 99.5 1.1E-12 2.3E-17 114.8 16.7 192 159-398 24-243 (249)
243 COG0606 Predicted ATPase with 99.5 2.2E-14 4.7E-19 135.4 6.7 118 159-305 176-315 (490)
244 KOG0505 Myosin phosphatase, re 99.5 4.1E-14 8.9E-19 133.5 7.9 114 3-120 105-273 (527)
245 COG0666 Arp FOG: Ankyrin repea 99.5 2.8E-13 6E-18 121.6 12.7 124 3-135 72-203 (235)
246 KOG0514 Ankyrin repeat protein 99.5 7.8E-14 1.7E-18 125.2 7.8 123 3-135 301-430 (452)
247 KOG4214 Myotrophin and similar 99.5 1.3E-13 2.8E-18 99.3 7.2 73 3-79 33-105 (117)
248 COG3284 AcoR Transcriptional a 99.5 8E-14 1.7E-18 135.7 8.1 175 198-404 335-540 (606)
249 PTZ00111 DNA replication licen 99.5 3E-13 6.6E-18 138.4 11.5 217 197-434 490-805 (915)
250 PRK13531 regulatory ATPase Rav 99.5 1.6E-13 3.4E-18 132.0 8.7 151 162-348 20-193 (498)
251 PF12796 Ank_2: Ankyrin repeat 99.5 1.7E-13 3.7E-18 103.9 7.0 86 45-139 1-86 (89)
252 PF13637 Ank_4: Ankyrin repeat 99.5 2E-13 4.3E-18 92.6 6.5 54 4-61 1-54 (54)
253 PF13857 Ank_5: Ankyrin repeat 99.4 8.4E-14 1.8E-18 95.0 4.6 51 31-81 6-56 (56)
254 PRK09862 putative ATP-dependen 99.4 5.9E-13 1.3E-17 130.5 12.0 151 160-339 189-391 (506)
255 PRK09112 DNA polymerase III su 99.4 2.4E-12 5.1E-17 121.9 15.0 158 158-348 19-212 (351)
256 TIGR01650 PD_CobS cobaltochela 99.4 3.4E-13 7.4E-18 124.1 8.2 136 199-349 64-233 (327)
257 PHA02792 ankyrin-like protein; 99.4 3.3E-13 7.3E-18 133.8 8.6 124 3-134 70-239 (631)
258 TIGR03015 pepcterm_ATPase puta 99.4 3.6E-12 7.8E-17 117.9 14.9 204 199-434 43-267 (269)
259 PRK13765 ATP-dependent proteas 99.4 2E-12 4.4E-17 130.4 13.6 128 257-404 221-380 (637)
260 KOG0515 p53-interacting protei 99.4 5E-13 1.1E-17 125.2 8.3 118 7-132 553-672 (752)
261 PHA02244 ATPase-like protein 99.4 3.9E-12 8.4E-17 118.3 14.2 124 198-340 118-265 (383)
262 TIGR00870 trp transient-recept 99.4 5.3E-13 1.2E-17 140.7 9.2 78 39-120 126-217 (743)
263 COG0464 SpoVK ATPases of the A 99.4 1.7E-12 3.7E-17 130.3 11.9 208 194-435 13-228 (494)
264 TIGR02031 BchD-ChlD magnesium 99.4 6E-13 1.3E-17 134.6 8.5 204 199-435 16-260 (589)
265 PRK07471 DNA polymerase III su 99.4 5.1E-12 1.1E-16 120.2 14.2 159 159-349 16-213 (365)
266 PF00308 Bac_DnaA: Bacterial d 99.4 2.5E-12 5.4E-17 114.2 11.1 177 199-403 34-215 (219)
267 KOG2035 Replication factor C, 99.4 6.2E-12 1.3E-16 110.0 13.1 185 159-400 10-232 (351)
268 KOG1710 MYND Zn-finger and ank 99.4 1.3E-12 2.7E-17 113.9 8.7 123 3-134 11-134 (396)
269 PF06068 TIP49: TIP49 C-termin 99.4 8.3E-12 1.8E-16 114.9 14.3 94 263-379 279-380 (398)
270 TIGR00602 rad24 checkpoint pro 99.4 4.8E-12 1E-16 127.3 14.0 212 159-402 81-329 (637)
271 KOG0507 CASK-interacting adapt 99.4 9E-13 1.9E-17 128.9 8.2 130 3-141 81-218 (854)
272 PF13637 Ank_4: Ankyrin repeat 99.4 1.2E-12 2.6E-17 88.8 6.3 54 41-98 1-54 (54)
273 PRK07399 DNA polymerase III su 99.4 1.3E-11 2.8E-16 115.3 15.2 159 160-350 2-196 (314)
274 PRK05564 DNA polymerase III su 99.4 1.3E-11 2.9E-16 116.3 15.1 154 160-349 2-165 (313)
275 PF14532 Sigma54_activ_2: Sigm 99.4 6.2E-13 1.3E-17 109.6 5.3 130 166-335 2-137 (138)
276 PF05621 TniB: Bacterial TniB 99.4 3E-11 6.4E-16 109.2 16.4 213 163-404 35-269 (302)
277 PF07726 AAA_3: ATPase family 99.4 4.8E-14 1E-18 110.5 -1.4 109 201-327 1-129 (131)
278 TIGR00678 holB DNA polymerase 99.3 3.3E-12 7.3E-17 111.3 8.7 129 198-348 13-167 (188)
279 PRK04132 replication factor C 99.3 7.9E-12 1.7E-16 128.9 12.7 160 200-402 565-737 (846)
280 COG2607 Predicted ATPase (AAA+ 99.3 1.4E-10 2.9E-15 99.8 17.6 200 159-403 57-280 (287)
281 COG0714 MoxR-like ATPases [Gen 99.3 1.9E-12 4.2E-17 122.8 7.0 135 198-350 42-203 (329)
282 PRK11331 5-methylcytosine-spec 99.3 5E-11 1.1E-15 114.0 16.3 155 159-343 172-366 (459)
283 COG0593 DnaA ATPase involved i 99.3 6.3E-11 1.4E-15 112.2 16.8 179 198-404 112-294 (408)
284 KOG0990 Replication factor C, 99.3 8E-12 1.7E-16 111.7 9.2 156 160-353 39-207 (360)
285 cd00009 AAA The AAA+ (ATPases 99.3 9.3E-12 2E-16 103.7 8.5 124 198-335 18-151 (151)
286 PRK08058 DNA polymerase III su 99.3 8.7E-12 1.9E-16 117.9 9.0 155 160-347 3-180 (329)
287 PF07728 AAA_5: AAA domain (dy 99.3 1.5E-12 3.2E-17 107.7 3.1 108 201-327 1-139 (139)
288 KOG1969 DNA replication checkp 99.3 2.8E-10 6.1E-15 112.1 17.8 201 159-404 268-518 (877)
289 PF13857 Ank_5: Ankyrin repeat 99.3 2.8E-12 6.1E-17 87.4 2.8 54 60-117 1-55 (56)
290 smart00763 AAA_PrkA PrkA AAA d 99.2 3.8E-10 8.3E-15 105.2 17.3 79 262-352 236-330 (361)
291 KOG3676 Ca2+-permeable cation 99.2 9.1E-12 2E-16 123.5 6.2 127 3-137 142-298 (782)
292 KOG1514 Origin recognition com 99.2 7.6E-10 1.6E-14 108.8 19.2 234 162-434 396-656 (767)
293 COG0470 HolB ATPase involved i 99.2 3.6E-11 7.8E-16 114.5 10.1 144 163-340 2-172 (325)
294 PF13177 DNA_pol3_delta2: DNA 99.2 3.3E-11 7.1E-16 101.8 8.3 136 166-337 1-162 (162)
295 KOG1051 Chaperone HSP104 and r 99.2 9.6E-11 2.1E-15 120.2 11.6 176 155-353 554-788 (898)
296 PRK05707 DNA polymerase III su 99.2 9.4E-11 2E-15 110.1 10.0 132 198-349 21-178 (328)
297 COG0666 Arp FOG: Ankyrin repea 99.2 1E-10 2.2E-15 104.9 9.3 92 2-101 104-203 (235)
298 COG1239 ChlI Mg-chelatase subu 99.2 5.2E-10 1.1E-14 104.7 13.9 158 161-350 16-233 (423)
299 cd00204 ANK ankyrin repeats; 99.1 2.2E-10 4.9E-15 92.2 9.0 94 37-135 3-96 (126)
300 KOG4369 RTK signaling protein 99.1 2.6E-11 5.6E-16 122.7 3.8 128 5-141 758-886 (2131)
301 KOG1942 DNA helicase, TBP-inte 99.1 1.4E-09 3E-14 96.1 14.0 92 263-377 297-397 (456)
302 PF00493 MCM: MCM2/3/5 family 99.1 1.6E-10 3.4E-15 109.2 8.7 209 198-434 56-327 (331)
303 PRK13406 bchD magnesium chelat 99.1 5.1E-10 1.1E-14 112.4 12.3 195 199-435 25-252 (584)
304 KOG0515 p53-interacting protei 99.1 1.1E-10 2.4E-15 109.8 6.4 93 2-100 581-674 (752)
305 smart00382 AAA ATPases associa 99.1 3.2E-10 7E-15 93.6 8.2 127 199-336 2-147 (148)
306 PRK08116 hypothetical protein; 99.1 3.1E-09 6.7E-14 97.3 13.7 129 199-338 114-251 (268)
307 PTZ00322 6-phosphofructo-2-kin 99.1 3.9E-10 8.4E-15 116.5 8.7 158 43-228 84-244 (664)
308 PRK08769 DNA polymerase III su 99.0 2.5E-09 5.4E-14 99.6 12.9 128 199-347 26-183 (319)
309 PRK06964 DNA polymerase III su 99.0 6E-10 1.3E-14 104.6 8.5 132 198-347 20-202 (342)
310 PRK06871 DNA polymerase III su 99.0 1.1E-09 2.3E-14 102.2 7.7 133 199-348 24-178 (325)
311 KOG1710 MYND Zn-finger and ank 99.0 2.1E-09 4.5E-14 94.1 8.4 89 2-98 43-132 (396)
312 KOG2680 DNA helicase TIP49, TB 99.0 2.5E-08 5.4E-13 88.6 15.2 134 263-434 289-430 (454)
313 COG1241 MCM2 Predicted ATPase 99.0 2E-09 4.4E-14 108.1 8.8 238 161-434 285-593 (682)
314 KOG2227 Pre-initiation complex 98.9 1.7E-08 3.6E-13 95.2 13.8 204 162-404 150-379 (529)
315 PRK08699 DNA polymerase III su 98.9 1.8E-09 3.9E-14 101.4 7.3 132 198-347 20-183 (325)
316 PRK06090 DNA polymerase III su 98.9 9.7E-09 2.1E-13 95.6 11.8 129 198-347 24-178 (319)
317 PF13173 AAA_14: AAA domain 98.9 7.6E-09 1.6E-13 84.0 9.8 121 200-341 3-127 (128)
318 KOG0741 AAA+-type ATPase [Post 98.9 7.2E-09 1.6E-13 98.7 10.9 135 198-347 537-684 (744)
319 PRK07993 DNA polymerase III su 98.9 5.6E-09 1.2E-13 98.4 10.0 129 198-347 23-178 (334)
320 PRK07952 DNA replication prote 98.9 1.2E-08 2.6E-13 91.5 11.4 100 199-308 99-203 (244)
321 PRK12377 putative replication 98.9 1.1E-08 2.5E-13 91.9 10.6 73 199-275 101-176 (248)
322 COG4650 RtcR Sigma54-dependent 98.9 1.3E-08 2.8E-13 90.2 9.9 92 197-300 206-309 (531)
323 PRK08181 transposase; Validate 98.9 1.5E-08 3.3E-13 92.2 10.5 75 198-276 105-181 (269)
324 KOG1051 Chaperone HSP104 and r 98.9 2.1E-08 4.6E-13 103.3 12.6 150 198-351 207-365 (898)
325 PF01637 Arch_ATPase: Archaeal 98.8 2E-07 4.3E-12 84.1 17.1 163 198-379 19-224 (234)
326 KOG4369 RTK signaling protein 98.8 2.7E-09 5.9E-14 108.5 4.8 128 5-141 858-988 (2131)
327 PRK06835 DNA replication prote 98.8 7.1E-08 1.5E-12 90.5 12.9 73 199-275 183-259 (329)
328 KOG0480 DNA replication licens 98.8 1.7E-07 3.7E-12 91.4 15.4 248 160-435 343-645 (764)
329 PF13606 Ank_3: Ankyrin repeat 98.8 7.5E-09 1.6E-13 60.1 3.8 28 41-68 2-29 (30)
330 KOG0478 DNA replication licens 98.8 2.6E-08 5.7E-13 97.7 9.5 211 198-434 461-725 (804)
331 KOG2170 ATPase of the AAA+ sup 98.7 1.6E-07 3.4E-12 83.9 12.6 125 154-298 73-203 (344)
332 PRK06526 transposase; Provisio 98.7 2.4E-08 5.1E-13 90.5 7.6 75 198-276 97-173 (254)
333 PF00023 Ank: Ankyrin repeat H 98.7 1.6E-08 3.4E-13 60.6 4.3 31 41-71 2-32 (33)
334 PF05729 NACHT: NACHT domain 98.7 2.6E-07 5.7E-12 78.5 13.4 144 201-351 2-165 (166)
335 KOG0818 GTPase-activating prot 98.7 3.7E-08 8E-13 92.4 8.4 86 7-100 136-222 (669)
336 KOG0783 Uncharacterized conser 98.7 5.7E-09 1.2E-13 103.4 2.2 76 3-82 51-127 (1267)
337 PF13401 AAA_22: AAA domain; P 98.7 5E-08 1.1E-12 79.5 7.2 102 199-310 4-125 (131)
338 PF13606 Ank_3: Ankyrin repeat 98.7 2.3E-08 5E-13 58.1 3.4 30 3-36 1-30 (30)
339 KOG0506 Glutaminase (contains 98.7 2E-08 4.4E-13 93.7 4.9 92 39-135 504-596 (622)
340 KOG0783 Uncharacterized conser 98.7 1.6E-08 3.5E-13 100.3 4.3 102 13-120 26-128 (1267)
341 PF00023 Ank: Ankyrin repeat H 98.7 3.4E-08 7.3E-13 59.1 3.9 33 3-39 1-33 (33)
342 PRK09183 transposase/IS protei 98.6 1.1E-07 2.3E-12 86.8 8.7 75 198-276 101-178 (259)
343 PRK05917 DNA polymerase III su 98.6 2.2E-07 4.8E-12 84.9 9.9 118 199-337 19-155 (290)
344 PRK06921 hypothetical protein; 98.6 1.7E-07 3.8E-12 85.6 9.2 71 198-273 116-188 (266)
345 KOG0522 Ankyrin repeat protein 98.6 9.4E-08 2E-12 90.8 7.3 86 7-98 23-108 (560)
346 KOG0705 GTPase-activating prot 98.6 1.3E-07 2.8E-12 90.5 8.1 95 8-106 628-722 (749)
347 COG1484 DnaC DNA replication p 98.6 4.4E-07 9.5E-12 82.3 11.2 75 198-276 104-181 (254)
348 PRK08939 primosomal protein Dn 98.6 2.7E-07 5.8E-12 86.0 9.8 101 198-308 155-259 (306)
349 PF01695 IstB_IS21: IstB-like 98.6 1.4E-07 3E-12 80.9 6.6 73 198-274 46-120 (178)
350 PRK07276 DNA polymerase III su 98.5 5.5E-07 1.2E-11 82.6 9.5 128 198-346 23-172 (290)
351 PF03215 Rad17: Rad17 cell cyc 98.5 2.5E-06 5.4E-11 84.9 14.7 55 160-225 17-71 (519)
352 PRK14700 recombination factor 98.5 3E-07 6.5E-12 83.2 7.2 114 294-432 1-114 (300)
353 PF06309 Torsin: Torsin; Inte 98.4 2E-06 4.4E-11 67.6 9.8 68 154-230 16-84 (127)
354 PRK05818 DNA polymerase III su 98.4 1.1E-06 2.4E-11 78.5 8.5 119 198-336 6-147 (261)
355 PF12775 AAA_7: P-loop contain 98.4 8.2E-07 1.8E-11 81.4 7.9 138 198-352 32-196 (272)
356 cd01120 RecA-like_NTPases RecA 98.4 1.3E-06 2.7E-11 74.0 7.9 108 201-312 1-138 (165)
357 KOG0506 Glutaminase (contains 98.4 4E-07 8.7E-12 85.2 5.0 91 3-101 505-596 (622)
358 KOG0511 Ankyrin repeat protein 98.3 1.5E-06 3.3E-11 79.2 8.0 73 5-82 37-109 (516)
359 PHA00729 NTP-binding motif con 98.3 8.8E-07 1.9E-11 77.7 6.3 26 199-224 17-42 (226)
360 KOG0782 Predicted diacylglycer 98.3 1.2E-06 2.5E-11 83.8 7.4 116 9-133 871-988 (1004)
361 PRK07132 DNA polymerase III su 98.3 2.2E-06 4.8E-11 79.3 9.2 126 200-347 19-160 (299)
362 KOG0482 DNA replication licens 98.3 2.5E-06 5.4E-11 81.3 9.5 110 162-277 342-454 (721)
363 KOG0818 GTPase-activating prot 98.3 1.9E-06 4.1E-11 81.2 8.6 94 36-134 122-222 (669)
364 KOG0481 DNA replication licens 98.3 4.5E-06 9.8E-11 79.7 10.9 238 163-434 332-640 (729)
365 KOG2228 Origin recognition com 98.3 5.8E-05 1.2E-09 68.9 16.5 163 162-350 24-220 (408)
366 KOG0705 GTPase-activating prot 98.3 1.1E-06 2.3E-11 84.3 5.4 62 2-67 659-720 (749)
367 PF00910 RNA_helicase: RNA hel 98.3 3.2E-06 6.9E-11 66.1 7.0 82 202-304 1-84 (107)
368 KOG0782 Predicted diacylglycer 98.3 1.5E-06 3.2E-11 83.1 5.9 90 4-99 899-988 (1004)
369 COG1618 Predicted nucleotide k 98.2 3.7E-05 7.9E-10 62.7 12.4 31 198-228 4-34 (179)
370 PF03969 AFG1_ATPase: AFG1-lik 98.2 6.3E-06 1.4E-10 78.5 8.4 104 196-314 59-171 (362)
371 KOG1970 Checkpoint RAD17-RFC c 98.2 4.7E-05 1E-09 73.8 14.1 146 200-353 111-284 (634)
372 KOG1968 Replication factor C, 98.1 6E-06 1.3E-10 86.2 8.2 146 202-379 360-521 (871)
373 KOG2384 Major histocompatibili 98.1 8.1E-06 1.8E-10 67.7 7.0 71 31-105 2-73 (223)
374 PF00931 NB-ARC: NB-ARC domain 98.1 4.6E-05 9.9E-10 71.1 13.0 135 198-352 18-173 (287)
375 cd01124 KaiC KaiC is a circadi 98.1 1.6E-05 3.4E-10 69.1 9.3 24 202-225 2-25 (187)
376 KOG0521 Putative GTPase activa 98.1 2.8E-06 6E-11 88.0 5.1 75 40-118 655-729 (785)
377 KOG0511 Ankyrin repeat protein 98.1 8.5E-06 1.8E-10 74.5 7.5 84 43-134 38-121 (516)
378 PF13604 AAA_30: AAA domain; P 98.1 1.1E-05 2.3E-10 70.6 7.7 100 200-314 19-134 (196)
379 KOG2543 Origin recognition com 98.1 0.00017 3.7E-09 67.0 15.5 187 197-417 28-247 (438)
380 PRK08118 topology modulation p 98.1 3.7E-05 8E-10 65.3 10.3 26 200-225 2-27 (167)
381 KOG0522 Ankyrin repeat protein 98.1 6.1E-06 1.3E-10 78.8 5.8 86 43-132 22-109 (560)
382 PRK00771 signal recognition pa 98.1 0.00018 4E-09 70.2 16.2 30 198-227 94-123 (437)
383 PF07693 KAP_NTPase: KAP famil 98.0 0.00025 5.4E-09 67.5 16.5 82 264-352 174-266 (325)
384 COG0563 Adk Adenylate kinase a 98.0 1.8E-05 3.9E-10 67.6 7.5 36 201-245 2-37 (178)
385 COG3854 SpoIIIAA ncharacterize 98.0 2.9E-05 6.4E-10 67.0 8.5 111 197-323 135-264 (308)
386 COG3267 ExeA Type II secretory 98.0 0.00012 2.7E-09 64.4 12.2 177 199-404 51-253 (269)
387 TIGR01618 phage_P_loop phage n 98.0 2.1E-05 4.5E-10 69.3 7.5 24 198-221 11-34 (220)
388 KOG0477 DNA replication licens 98.0 4.4E-05 9.5E-10 74.8 10.1 106 162-277 449-561 (854)
389 PRK13695 putative NTPase; Prov 98.0 0.00014 3E-09 62.4 12.1 25 201-225 2-26 (174)
390 PRK10536 hypothetical protein; 98.0 5.3E-05 1.2E-09 67.7 9.4 24 200-223 75-98 (262)
391 PRK04296 thymidine kinase; Pro 97.9 2.8E-05 6.1E-10 67.6 7.3 26 201-226 4-29 (190)
392 PHA02624 large T antigen; Prov 97.9 1.7E-05 3.6E-10 78.7 6.1 113 200-335 432-561 (647)
393 KOG0521 Putative GTPase activa 97.9 1E-05 2.2E-10 83.9 4.9 78 2-83 654-731 (785)
394 PF03266 NTPase_1: NTPase; In 97.9 2.8E-05 6E-10 65.9 6.7 25 201-225 1-25 (168)
395 PRK07261 topology modulation p 97.9 4.7E-05 1E-09 65.0 7.5 102 201-351 2-103 (171)
396 PF14516 AAA_35: AAA-like doma 97.9 0.00085 1.9E-08 63.7 16.6 140 198-349 30-214 (331)
397 TIGR02688 conserved hypothetic 97.9 5.5E-05 1.2E-09 72.2 8.2 82 198-300 208-291 (449)
398 PLN03210 Resistant to P. syrin 97.8 0.00024 5.3E-09 78.8 14.5 52 160-225 182-233 (1153)
399 PF12774 AAA_6: Hydrolytic ATP 97.8 2.5E-05 5.3E-10 69.7 5.5 65 199-276 32-98 (231)
400 PF09848 DUF2075: Uncharacteri 97.8 0.00016 3.5E-09 69.4 11.3 147 201-352 3-182 (352)
401 TIGR02237 recomb_radB DNA repa 97.8 9.9E-05 2.1E-09 65.4 9.2 108 198-309 11-148 (209)
402 PRK15455 PrkA family serine pr 97.8 2.7E-05 5.9E-10 76.9 5.7 56 160-225 74-129 (644)
403 cd01121 Sms Sms (bacterial rad 97.8 0.00015 3.3E-09 69.5 10.5 107 198-308 81-207 (372)
404 KOG2384 Major histocompatibili 97.8 7.1E-05 1.5E-09 62.2 6.9 66 3-72 11-77 (223)
405 PHA02774 E1; Provisional 97.8 5.6E-05 1.2E-09 74.8 7.5 25 200-224 435-459 (613)
406 PF13207 AAA_17: AAA domain; P 97.8 1.8E-05 4E-10 63.3 3.3 24 202-225 2-25 (121)
407 COG1373 Predicted ATPase (AAA+ 97.8 0.0004 8.6E-09 67.5 13.0 119 201-343 39-161 (398)
408 PRK14722 flhF flagellar biosyn 97.8 0.0005 1.1E-08 65.5 13.3 27 198-224 136-162 (374)
409 PRK11823 DNA repair protein Ra 97.8 0.00017 3.7E-09 71.1 10.4 107 198-308 79-205 (446)
410 KOG0520 Uncharacterized conser 97.8 2.2E-05 4.9E-10 81.0 4.3 123 3-134 573-702 (975)
411 PF01745 IPT: Isopentenyl tran 97.8 0.0002 4.3E-09 61.6 9.1 138 202-352 4-142 (233)
412 cd03283 ABC_MutS-like MutS-lik 97.8 0.0003 6.4E-09 61.6 10.6 111 200-316 26-153 (199)
413 COG5271 MDN1 AAA ATPase contai 97.7 0.00014 2.9E-09 78.7 9.7 131 198-349 887-1047(4600)
414 PRK14532 adenylate kinase; Pro 97.7 0.0002 4.2E-09 62.3 8.9 36 201-245 2-37 (188)
415 PTZ00088 adenylate kinase 1; P 97.7 0.00018 4E-09 64.2 8.7 28 198-225 5-32 (229)
416 cd00046 DEXDc DEAD-like helica 97.7 0.0002 4.4E-09 58.3 8.5 26 200-225 1-26 (144)
417 PF02562 PhoH: PhoH-like prote 97.7 0.0002 4.2E-09 62.3 8.6 27 200-226 20-46 (205)
418 PRK12723 flagellar biosynthesi 97.7 0.0019 4.1E-08 62.2 15.9 78 198-275 173-267 (388)
419 PRK09376 rho transcription ter 97.7 7.8E-05 1.7E-09 70.6 6.3 29 197-225 167-195 (416)
420 PF10923 DUF2791: P-loop Domai 97.7 0.0036 7.7E-08 60.4 17.4 109 263-380 240-372 (416)
421 PF12780 AAA_8: P-loop contain 97.7 0.00024 5.1E-09 64.9 9.0 166 163-352 9-213 (268)
422 PF05707 Zot: Zonular occluden 97.7 9.1E-05 2E-09 64.6 6.1 64 262-333 79-143 (193)
423 COG1067 LonB Predicted ATP-dep 97.7 0.00018 4E-09 73.0 8.9 156 254-435 217-401 (647)
424 PRK00131 aroK shikimate kinase 97.6 4.6E-05 9.9E-10 65.3 3.9 28 198-225 3-30 (175)
425 TIGR01425 SRP54_euk signal rec 97.6 0.0078 1.7E-07 58.5 19.4 30 198-227 99-128 (429)
426 COG5271 MDN1 AAA ATPase contai 97.6 0.00029 6.4E-09 76.3 10.2 132 199-351 1543-1705(4600)
427 PLN02674 adenylate kinase 97.6 0.0001 2.2E-09 66.0 6.0 27 198-224 30-56 (244)
428 PLN02200 adenylate kinase fami 97.6 0.00019 4E-09 64.5 7.7 41 196-245 40-80 (234)
429 PRK10867 signal recognition pa 97.6 0.0041 8.8E-08 60.8 17.1 29 198-226 99-127 (433)
430 PRK08533 flagellar accessory p 97.6 0.0006 1.3E-08 61.2 10.6 26 198-223 23-48 (230)
431 PRK06581 DNA polymerase III su 97.6 0.003 6.5E-08 55.7 14.4 133 200-352 16-164 (263)
432 cd01128 rho_factor Transcripti 97.6 9.7E-05 2.1E-09 66.7 5.3 29 196-224 13-41 (249)
433 PRK13949 shikimate kinase; Pro 97.6 0.00012 2.6E-09 62.3 5.5 26 200-225 2-27 (169)
434 cd00544 CobU Adenosylcobinamid 97.6 0.00041 8.8E-09 58.8 8.4 100 202-308 2-123 (169)
435 PF06745 KaiC: KaiC; InterPro 97.6 0.00065 1.4E-08 60.9 10.3 105 197-308 17-158 (226)
436 PRK05973 replicative DNA helic 97.6 0.0018 3.8E-08 57.9 12.7 105 198-309 63-191 (237)
437 KOG3347 Predicted nucleotide k 97.5 6.8E-05 1.5E-09 60.2 3.2 28 198-225 6-33 (176)
438 PF13245 AAA_19: Part of AAA d 97.5 0.00022 4.7E-09 51.6 5.5 25 200-224 11-36 (76)
439 PRK05800 cobU adenosylcobinami 97.5 0.00026 5.6E-09 60.2 6.7 100 201-307 3-122 (170)
440 KOG3609 Receptor-activated Ca2 97.5 0.00014 3E-09 73.7 5.8 59 8-66 29-87 (822)
441 PRK06067 flagellar accessory p 97.5 0.00079 1.7E-08 60.7 10.3 27 197-223 23-49 (234)
442 PRK06217 hypothetical protein; 97.5 0.00036 7.9E-09 60.3 7.6 26 200-225 2-27 (183)
443 PRK00625 shikimate kinase; Pro 97.5 8.4E-05 1.8E-09 63.3 3.5 25 201-225 2-26 (173)
444 KOG0520 Uncharacterized conser 97.5 6.1E-05 1.3E-09 77.9 3.1 91 2-100 606-702 (975)
445 COG0703 AroK Shikimate kinase 97.5 8.1E-05 1.7E-09 62.2 3.3 27 199-225 2-28 (172)
446 cd01131 PilT Pilus retraction 97.5 0.00058 1.3E-08 59.8 8.8 25 201-225 3-27 (198)
447 TIGR01448 recD_rel helicase, p 97.5 0.00024 5.2E-09 74.3 7.1 88 200-300 339-443 (720)
448 PRK06547 hypothetical protein; 97.5 0.00031 6.8E-09 59.8 6.6 29 197-225 13-41 (172)
449 PRK14529 adenylate kinase; Pro 97.5 0.00032 6.8E-09 62.1 6.7 25 201-225 2-26 (223)
450 PRK13947 shikimate kinase; Pro 97.5 0.00011 2.4E-09 62.7 3.7 26 200-225 2-27 (171)
451 PF13191 AAA_16: AAA ATPase do 97.4 0.00016 3.4E-09 62.5 4.7 50 164-226 2-51 (185)
452 PRK13808 adenylate kinase; Pro 97.4 0.00041 8.9E-09 64.9 7.6 25 201-225 2-26 (333)
453 cd03282 ABC_MSH4_euk MutS4 hom 97.4 0.0016 3.5E-08 57.2 10.9 112 200-318 30-158 (204)
454 PF00448 SRP54: SRP54-type pro 97.4 0.001 2.2E-08 58.0 9.5 104 199-310 1-125 (196)
455 PRK03839 putative kinase; Prov 97.4 0.00011 2.4E-09 63.3 3.4 25 201-225 2-26 (180)
456 PRK06762 hypothetical protein; 97.4 0.0003 6.4E-09 59.8 5.9 24 200-223 3-26 (166)
457 TIGR02858 spore_III_AA stage I 97.4 0.0012 2.5E-08 60.5 10.0 26 199-224 111-136 (270)
458 PLN02459 probable adenylate ki 97.4 0.00067 1.4E-08 61.2 8.2 38 198-244 28-65 (261)
459 cd03243 ABC_MutS_homologs The 97.4 0.0022 4.7E-08 56.4 11.5 110 200-315 30-155 (202)
460 TIGR03877 thermo_KaiC_1 KaiC d 97.4 0.0013 2.9E-08 59.3 10.2 26 197-222 19-44 (237)
461 KOG0479 DNA replication licens 97.4 0.0015 3.2E-08 64.0 10.7 107 162-276 301-412 (818)
462 TIGR02012 tigrfam_recA protein 97.4 0.0013 2.8E-08 61.5 10.1 108 198-309 54-190 (321)
463 cd03281 ABC_MSH5_euk MutS5 hom 97.4 0.0017 3.7E-08 57.5 10.5 22 200-221 30-51 (213)
464 TIGR00150 HI0065_YjeE ATPase, 97.4 0.00022 4.9E-09 57.4 4.4 40 198-237 21-60 (133)
465 PRK09361 radB DNA repair and r 97.4 0.00088 1.9E-08 60.0 8.8 28 198-225 22-49 (225)
466 COG1102 Cmk Cytidylate kinase 97.4 0.00013 2.9E-09 59.5 3.0 24 202-225 3-26 (179)
467 COG4088 Predicted nucleotide k 97.4 0.00074 1.6E-08 57.5 7.4 27 201-227 3-29 (261)
468 PF13671 AAA_33: AAA domain; P 97.4 0.00012 2.6E-09 60.4 2.7 23 202-224 2-24 (143)
469 PRK13948 shikimate kinase; Pro 97.4 0.00024 5.2E-09 61.0 4.5 43 198-249 9-51 (182)
470 PRK04040 adenylate kinase; Pro 97.3 0.00035 7.7E-09 60.5 5.5 26 199-224 2-27 (188)
471 TIGR00959 ffh signal recogniti 97.3 0.037 7.9E-07 54.2 19.9 27 198-224 98-124 (428)
472 cd00464 SK Shikimate kinase (S 97.3 0.00019 4.1E-09 60.1 3.6 25 201-225 1-25 (154)
473 TIGR01359 UMP_CMP_kin_fam UMP- 97.3 0.0002 4.3E-09 61.9 3.8 35 202-245 2-36 (183)
474 TIGR00416 sms DNA repair prote 97.3 0.002 4.3E-08 63.7 11.2 107 198-308 93-219 (454)
475 PF13238 AAA_18: AAA domain; P 97.3 0.00019 4.1E-09 57.9 3.4 22 202-223 1-22 (129)
476 COG1485 Predicted ATPase [Gene 97.3 0.00035 7.5E-09 64.6 5.3 109 196-313 62-173 (367)
477 PRK11889 flhF flagellar biosyn 97.3 0.0094 2E-07 56.9 14.6 76 198-275 240-333 (436)
478 smart00487 DEXDc DEAD-like hel 97.3 0.00097 2.1E-08 57.9 7.8 24 200-223 25-49 (201)
479 TIGR03574 selen_PSTK L-seryl-t 97.3 0.00065 1.4E-08 61.9 6.9 25 202-226 2-26 (249)
480 PRK08233 hypothetical protein; 97.3 0.0012 2.6E-08 56.9 8.2 25 200-224 4-28 (182)
481 TIGR03878 thermo_KaiC_2 KaiC d 97.3 0.0019 4.1E-08 59.1 9.8 26 198-223 35-60 (259)
482 COG1936 Predicted nucleotide k 97.3 0.00018 3.9E-09 59.6 2.7 24 201-225 2-25 (180)
483 cd02019 NK Nucleoside/nucleoti 97.3 0.00029 6.3E-09 50.0 3.4 22 202-223 2-23 (69)
484 PRK00279 adk adenylate kinase; 97.2 0.00098 2.1E-08 59.3 7.4 25 201-225 2-26 (215)
485 TIGR00767 rho transcription te 97.2 0.0005 1.1E-08 65.5 5.8 30 196-225 165-194 (415)
486 cd03280 ABC_MutS2 MutS2 homolo 97.2 0.0025 5.5E-08 55.9 9.9 21 201-221 30-50 (200)
487 TIGR01351 adk adenylate kinase 97.2 0.0008 1.7E-08 59.6 6.7 24 202-225 2-25 (210)
488 PTZ00202 tuzin; Provisional 97.2 0.012 2.6E-07 56.6 14.8 52 160-224 260-311 (550)
489 PRK14531 adenylate kinase; Pro 97.2 0.00028 6E-09 61.0 3.6 26 200-225 3-28 (183)
490 cd00227 CPT Chloramphenicol (C 97.2 0.00024 5.2E-09 60.9 3.1 26 200-225 3-28 (175)
491 cd01130 VirB11-like_ATPase Typ 97.2 0.0015 3.3E-08 56.6 8.1 27 198-224 24-50 (186)
492 cd01129 PulE-GspE PulE/GspE Th 97.2 0.0061 1.3E-07 55.8 12.4 97 199-313 80-186 (264)
493 cd00983 recA RecA is a bacter 97.2 0.0017 3.6E-08 60.8 8.7 108 198-309 54-190 (325)
494 PRK14530 adenylate kinase; Pro 97.2 0.00032 6.9E-09 62.4 3.8 26 200-225 4-29 (215)
495 PRK14974 cell division protein 97.2 0.0044 9.6E-08 58.5 11.4 30 198-227 139-168 (336)
496 COG4619 ABC-type uncharacteriz 97.2 0.0029 6.3E-08 52.3 8.7 27 197-223 27-53 (223)
497 PF05272 VirE: Virulence-assoc 97.2 0.0031 6.7E-08 54.9 9.6 59 198-276 51-109 (198)
498 cd02027 APSK Adenosine 5'-phos 97.2 0.0012 2.6E-08 54.9 6.7 24 202-225 2-25 (149)
499 TIGR03499 FlhF flagellar biosy 97.2 0.0088 1.9E-07 55.4 13.1 28 198-225 193-220 (282)
500 COG1855 ATPase (PilT family) [ 97.2 0.00057 1.2E-08 64.9 5.2 49 159-228 244-292 (604)
No 1
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-42 Score=311.06 Aligned_cols=236 Identities=22% Similarity=0.322 Sum_probs=204.9
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706 158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 237 (438)
Q Consensus 158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 237 (438)
...+++++|.+..+++|++. +..|..+++++..++..+|++||||||||||||++||++|+.... .|+.+
T Consensus 147 dvtY~dIGGL~~Qi~EirE~---VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A-------tFIrv 216 (406)
T COG1222 147 DVTYEDIGGLDEQIQEIREV---VELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA-------TFIRV 216 (406)
T ss_pred CCChhhccCHHHHHHHHHHH---hcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc-------eEEEe
Confidence 45799999999777777765 888999999999999999999999999999999999999998776 99999
Q ss_pred ecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCC---chhHHHHHHHHHhhccC----CCEEEEEe
Q 013706 238 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFA 307 (438)
Q Consensus 238 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~~~~----~~v~vi~~ 307 (438)
.+++++.+|+|+..+.++++|..|+ +|||||||||++..+|..++ ....++++-+||.+||+ ++|-||+|
T Consensus 217 vgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~A 296 (406)
T COG1222 217 VGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMA 296 (406)
T ss_pred ccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEe
Confidence 9999999999999999999999885 59999999999999886543 33455666777888887 78999999
Q ss_pred cCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706 308 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 385 (438)
Q Consensus 308 ~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (438)
||+.++. ||||+| |||++|+||.|+.+.|.+||+.+.++. .+.++++.+.++..+.+
T Consensus 297 TNR~D~L-----DPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM---------~l~~dvd~e~la~~~~g------- 355 (406)
T COG1222 297 TNRPDIL-----DPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM---------NLADDVDLELLARLTEG------- 355 (406)
T ss_pred cCCcccc-----ChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc---------cCccCcCHHHHHHhcCC-------
Confidence 8887765 999999 999999999999999999999999876 56788888888877774
Q ss_pred ccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706 386 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 386 ~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 435 (438)
.+|+++++++..|...|. ++....||++||.+|++++..
T Consensus 356 --~sGAdlkaictEAGm~Ai---------R~~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 356 --FSGADLKAICTEAGMFAI---------RERRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred --CchHHHHHHHHHHhHHHH---------HhccCeecHHHHHHHHHHHHh
Confidence 558888999998888762 345578999999999999865
No 2
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-40 Score=318.47 Aligned_cols=241 Identities=22% Similarity=0.267 Sum_probs=213.9
Q ss_pred HHHHHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCE
Q 013706 155 DELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV 234 (438)
Q Consensus 155 ~~~~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~ 234 (438)
+..+..|++|+|++++|..+++. +.++.++++.+.+++..+|++||||||||||||++||++|++... +|
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~---V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~-------nF 496 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQA---VEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGM-------NF 496 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHH---HhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcC-------Ce
Confidence 34456799999999999999987 777889999999999899999999999999999999999999887 99
Q ss_pred EEeecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC----CCEEEEEe
Q 013706 235 TEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFA 307 (438)
Q Consensus 235 ~~~~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~v~vi~~ 307 (438)
+.+.+.+++++|+|++++.++.+|++|+ +||||+||||++...|+++++....+++++||+.||+ ++|+||+|
T Consensus 497 lsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAA 576 (693)
T KOG0730|consen 497 LSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAA 576 (693)
T ss_pred eeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEec
Confidence 9999999999999999999999999885 5999999999999999877778899999999999997 57999999
Q ss_pred cCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706 308 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 385 (438)
Q Consensus 308 ~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (438)
||+.+.. ||||+| |||..|++|.|+.+.|.+||+.++++. ++.++++.+.++..+.+++
T Consensus 577 TNRpd~I-----D~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm---------p~~~~vdl~~La~~T~g~S----- 637 (693)
T KOG0730|consen 577 TNRPDMI-----DPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM---------PFSEDVDLEELAQATEGYS----- 637 (693)
T ss_pred cCChhhc-----CHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC---------CCCccccHHHHHHHhccCC-----
Confidence 8877665 999999 999999999999999999999999876 4567778777777777655
Q ss_pred ccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706 386 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 386 ~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 435 (438)
|+++.+++++|...+..+.- +...|+.+||++|++..+|
T Consensus 638 ----GAel~~lCq~A~~~a~~e~i-------~a~~i~~~hf~~al~~~r~ 676 (693)
T KOG0730|consen 638 ----GAEIVAVCQEAALLALRESI-------EATEITWQHFEEALKAVRP 676 (693)
T ss_pred ----hHHHHHHHHHHHHHHHHHhc-------ccccccHHHHHHHHHhhcc
Confidence 88899999999988855432 2567899999999998776
No 3
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-39 Score=292.03 Aligned_cols=246 Identities=22% Similarity=0.266 Sum_probs=207.6
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
.+|++|.|++++|+-|++. +..|...++.+..+. .++++||++||||||||+||+++|.+++. .|+.++
T Consensus 209 ikW~DIagl~~AK~lL~EA---VvlPi~mPe~F~Gir-rPWkgvLm~GPPGTGKTlLAKAvATEc~t-------TFFNVS 277 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEA---VVLPIWMPEFFKGIR-RPWKGVLMVGPPGTGKTLLAKAVATECGT-------TFFNVS 277 (491)
T ss_pred cChHhhcchHHHHHHHHHH---HhhhhhhHHHHhhcc-cccceeeeeCCCCCcHHHHHHHHHHhhcC-------eEEEec
Confidence 5799999999999999987 777777787777653 58999999999999999999999999986 999999
Q ss_pred cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCC-CchhHHHHHHHHHhhccC-------CCEEEEEe
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD-DKDYGIEALEEIMSVMDG-------GKVVVIFA 307 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~~~~-------~~v~vi~~ 307 (438)
.+.+.++|-|++++.++-+|+.|+ +++|||||||+|+++|+++ +|+.++++.+.||.+||+ .++|+|+|
T Consensus 278 sstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLA 357 (491)
T KOG0738|consen 278 SSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLA 357 (491)
T ss_pred hhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEe
Confidence 999999999999999999999985 6999999999999998865 688999999999999997 25666666
Q ss_pred cCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhcc
Q 013706 308 GYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 387 (438)
Q Consensus 308 ~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (438)
.|+-+++ .|.||+|||.+.|.+|.|+.+.|..+++..|... .+.+.+..+.++..+++|+
T Consensus 358 ATN~PWd----iDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~---------~~~~~~~~~~lae~~eGyS------- 417 (491)
T KOG0738|consen 358 ATNFPWD----IDEALRRRLEKRIYIPLPDAEARSALIKILLRSV---------ELDDPVNLEDLAERSEGYS------- 417 (491)
T ss_pred ccCCCcc----hHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccc---------cCCCCccHHHHHHHhcCCC-------
Confidence 6666665 3899999999999999999999999999998764 4567788888888888777
Q ss_pred ccccchHHHHHHHHHHhhccccCCC-------CChhhh-hhccHHHHHHHHHHHHhcC
Q 013706 388 MNGGLVDPMLVNARENLDLRLSFDC-------LDTDEL-RTITLEDLEAGLKLLLRLG 437 (438)
Q Consensus 388 ~n~~~l~~~~~~a~~~~~~r~~~~~-------~~~~~~-~~i~~~d~~~a~~~~~~~~ 437 (438)
|+++.+++..|...+..|-..+. ...++. .+++.+||++|+.+++|.+
T Consensus 418 --GaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSv 473 (491)
T KOG0738|consen 418 --GADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSV 473 (491)
T ss_pred --hHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCC
Confidence 66778888888777776532211 112222 4699999999999999864
No 4
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-38 Score=301.15 Aligned_cols=249 Identities=22% Similarity=0.293 Sum_probs=212.3
Q ss_pred HHHHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEE
Q 013706 156 ELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT 235 (438)
Q Consensus 156 ~~~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~ 235 (438)
.....|+++++++.++.++... +.+|.++++.+..++...|.+|||+||||||||++||++|++.+. .|+
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~a---I~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~-------NFi 574 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMA---ILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGA-------NFI 574 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHH---HhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccC-------ceE
Confidence 3456899999999999999986 778889999999999999999999999999999999999999887 999
Q ss_pred EeecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC----CCEEEEEec
Q 013706 236 EVQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAG 308 (438)
Q Consensus 236 ~~~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~v~vi~~~ 308 (438)
.+.+.+++++|+||++..++..|..|+ +||||+||+|+|.|+|+...++.+.+++|+||..||+ ..|+||+||
T Consensus 575 sVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaAT 654 (802)
T KOG0733|consen 575 SVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAAT 654 (802)
T ss_pred eecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeec
Confidence 999999999999999999999999986 4999999999999999988888999999999999998 569999999
Q ss_pred CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHH--HHhhHhh
Q 013706 309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE--KETTEKQ 384 (438)
Q Consensus 309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 384 (438)
|+.++. |||++| |||..+.++.|+.+||.+||+...+.. +-.++.+++.+.++...+ +|+
T Consensus 655 NRPDiI-----DpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~-------k~pl~~dVdl~eia~~~~c~gft---- 718 (802)
T KOG0733|consen 655 NRPDII-----DPAILRPGRLDKLLYVGLPNAEERVAILKTITKNT-------KPPLSSDVDLDEIARNTKCEGFT---- 718 (802)
T ss_pred CCCccc-----chhhcCCCccCceeeecCCCHHHHHHHHHHHhccC-------CCCCCcccCHHHHhhcccccCCc----
Confidence 888775 999999 999999999999999999999998852 336788889888888776 555
Q ss_pred hccccccchHHHHHHHHHHhhccccCC---CCChhh----hhhccHHHHHHHHHHHHh
Q 013706 385 RREMNGGLVDPMLVNARENLDLRLSFD---CLDTDE----LRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 385 ~~~~n~~~l~~~~~~a~~~~~~r~~~~---~~~~~~----~~~i~~~d~~~a~~~~~~ 435 (438)
|++|-.+|.+|.-.|..+...+ ..++.. ...++..||++|++.++|
T Consensus 719 -----GADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~p 771 (802)
T KOG0733|consen 719 -----GADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRP 771 (802)
T ss_pred -----hhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCC
Confidence 6667777776665554332211 111111 235889999999999987
No 5
>CHL00181 cbbX CbbX; Provisional
Probab=100.00 E-value=2.1e-36 Score=278.01 Aligned_cols=264 Identities=37% Similarity=0.598 Sum_probs=217.0
Q ss_pred hhHHHHHHHHh-hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcC
Q 013706 152 AKMDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP 230 (438)
Q Consensus 152 ~~~~~~~~~l~-~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~ 230 (438)
..++++...++ +++|++.+|++|++++..+.....+...+.... .++.+++|+||||||||++|+++|+.+...+...
T Consensus 12 ~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~-~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~ 90 (287)
T CHL00181 12 TQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSS-NPGLHMSFTGSPGTGKTTVALKMADILYKLGYIK 90 (287)
T ss_pred cCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 34566677776 799999999999999888877777777665432 3566899999999999999999999998888888
Q ss_pred CCCEEEeecccccccccccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEec
Q 013706 231 TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAG 308 (438)
Q Consensus 231 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~ 308 (438)
.+++++++.+++.+.|+|+++.++.++|+++.++||||||+|.+.+.+. +++.+.++++.|+..|++ ++++||+++
T Consensus 91 ~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~--~~~~~~e~~~~L~~~me~~~~~~~vI~ag 168 (287)
T CHL00181 91 KGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDN--ERDYGSEAIEILLQVMENQRDDLVVIFAG 168 (287)
T ss_pred CCceEEecHHHHHHHHhccchHHHHHHHHHccCCEEEEEccchhccCCC--ccchHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 8899999999999999999999999999999999999999999976432 345677889999999986 568999999
Q ss_pred CChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhh-Hhhhcc
Q 013706 309 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETT-EKQRRE 387 (438)
Q Consensus 309 ~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 387 (438)
+++.++.++..+|+|++||+.+|.|++|+.+|+.+|+..++.+.. +.+. +++...+...... .....+
T Consensus 169 ~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~-------~~l~----~~~~~~L~~~i~~~~~~~~~ 237 (287)
T CHL00181 169 YKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQ-------YQLT----PEAEKALLDYIKKRMEQPLF 237 (287)
T ss_pred CcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhc-------CCCC----hhHHHHHHHHHHHhCCCCCC
Confidence 998888888889999999999999999999999999999998753 2333 3444443332211 112358
Q ss_pred ccccchHHHHHHHHHHhhccccCC---CCChhhhhhccHHHHHHH
Q 013706 388 MNGGLVDPMLVNARENLDLRLSFD---CLDTDELRTITLEDLEAG 429 (438)
Q Consensus 388 ~n~~~l~~~~~~a~~~~~~r~~~~---~~~~~~~~~i~~~d~~~a 429 (438)
||+|.++++++++..+++.|+... ..+.+++.+++.+|+.+.
T Consensus 238 GNaR~vrn~ve~~~~~~~~r~~~~~~~~~~~~~l~~~~~~d~~~~ 282 (287)
T CHL00181 238 ANARSVRNALDRARMRQANRIFESGGRVLTKADLVTIEAEDILKS 282 (287)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHhCCCHHHHhHH
Confidence 999999999999999999998653 345678899999999753
No 6
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=100.00 E-value=3e-36 Score=277.50 Aligned_cols=263 Identities=37% Similarity=0.582 Sum_probs=218.6
Q ss_pred hHHHHHHHHh-hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC
Q 013706 153 KMDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT 231 (438)
Q Consensus 153 ~~~~~~~~l~-~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~ 231 (438)
.+.+....++ +++|++++|++|.++..++..+..+...|.... .+..+++|+||||||||++|+++|+.+...+....
T Consensus 12 ~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~-~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~ 90 (284)
T TIGR02880 12 GITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASA-APTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRK 90 (284)
T ss_pred cHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcC-CCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCccc
Confidence 4455556676 699999999999999998888877777776542 25568999999999999999999999988888878
Q ss_pred CCEEEeecccccccccccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecC
Q 013706 232 DRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGY 309 (438)
Q Consensus 232 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~ 309 (438)
++++.++++++++.++|+++.+++++|+++.+|||||||++.+.+.++ +...+.++++.|++.|++ .++++|++++
T Consensus 91 ~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~--~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~ 168 (284)
T TIGR02880 91 GHLVSVTRDDLVGQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDN--ERDYGQEAIEILLQVMENQRDDLVVILAGY 168 (284)
T ss_pred ceEEEecHHHHhHhhcccchHHHHHHHHHccCcEEEEechhhhccCCC--ccchHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 899999999999999999999999999999999999999999975432 345667888999999986 4789999999
Q ss_pred ChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHh-hHhhhccc
Q 013706 310 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET-TEKQRREM 388 (438)
Q Consensus 310 ~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 388 (438)
++.++.++..+|+|++||+..|+||+|+.+|+.+|+.+++++.. ..++.+++..+..+.. ......+|
T Consensus 169 ~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~-----------~~l~~~a~~~L~~~l~~~~~~~~~G 237 (284)
T TIGR02880 169 KDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQ-----------YRFSAEAEEAFADYIALRRTQPHFA 237 (284)
T ss_pred cHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhc-----------cccCHHHHHHHHHHHHHhCCCCCCC
Confidence 98888888889999999999999999999999999999998753 2345566666655411 00112399
Q ss_pred cccchHHHHHHHHHHhhccccCC---CCChhhhhhccHHHHHHH
Q 013706 389 NGGLVDPMLVNARENLDLRLSFD---CLDTDELRTITLEDLEAG 429 (438)
Q Consensus 389 n~~~l~~~~~~a~~~~~~r~~~~---~~~~~~~~~i~~~d~~~a 429 (438)
|+|+++|+++++..+++.|+..+ ..+.+++.+|+.+|+.++
T Consensus 238 N~R~lrn~ve~~~~~~~~r~~~~~~~~~~~~~~~~~~~~d~~~~ 281 (284)
T TIGR02880 238 NARSIRNAIDRARLRQANRLFCDLDRVLDKSDLETIDPEDLLAS 281 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCcCCCCCHHHHhCCCHHHHhhc
Confidence 99999999999999999998653 356788999999999765
No 7
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-37 Score=292.08 Aligned_cols=218 Identities=20% Similarity=0.262 Sum_probs=193.9
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706 158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 237 (438)
Q Consensus 158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 237 (438)
...|.+++|++....++++++..+ .+++.+..++..+|+++||+||||||||++|++||.+++. ||+.+
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i----~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v-------Pf~~i 254 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHI----KHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV-------PFLSI 254 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHh----cCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC-------ceEee
Confidence 347999999999999999986655 5555666677789999999999999999999999999988 99999
Q ss_pred ecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--------CCEEEEE
Q 013706 238 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--------GKVVVIF 306 (438)
Q Consensus 238 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--------~~v~vi~ 306 (438)
++.++++.+.|+++++++++|++|. +||+||||||.+.|+|+..+.++.++++.+||+.||+ ..|+||+
T Consensus 255 sApeivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIg 334 (802)
T KOG0733|consen 255 SAPEIVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIG 334 (802)
T ss_pred cchhhhcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEe
Confidence 9999999999999999999999995 4999999999999999988899999999999999986 4589999
Q ss_pred ecCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhh
Q 013706 307 AGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ 384 (438)
Q Consensus 307 ~~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (438)
||++.+.. ||+||| ||+..|.+..|+..+|.+||+..++. +.+...++..-++.++.++.
T Consensus 335 ATnRPDsl-----DpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~---------lrl~g~~d~~qlA~lTPGfV---- 396 (802)
T KOG0733|consen 335 ATNRPDSL-----DPALRRAGRFDREICLGVPSETAREEILRIICRG---------LRLSGDFDFKQLAKLTPGFV---- 396 (802)
T ss_pred cCCCCccc-----CHHHhccccccceeeecCCchHHHHHHHHHHHhh---------CCCCCCcCHHHHHhcCCCcc----
Confidence 98876654 999999 99999999999999999999999875 45667788889999998776
Q ss_pred hccccccchHHHHHHHHHHhhcccc
Q 013706 385 RREMNGGLVDPMLVNARENLDLRLS 409 (438)
Q Consensus 385 ~~~~n~~~l~~~~~~a~~~~~~r~~ 409 (438)
|++|..++..|..-+..|+.
T Consensus 397 -----GADL~AL~~~Aa~vAikR~l 416 (802)
T KOG0733|consen 397 -----GADLMALCREAAFVAIKRIL 416 (802)
T ss_pred -----chhHHHHHHHHHHHHHHHHh
Confidence 77888888888888888864
No 8
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-37 Score=298.51 Aligned_cols=246 Identities=22% Similarity=0.291 Sum_probs=205.7
Q ss_pred HHHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEE
Q 013706 157 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 236 (438)
Q Consensus 157 ~~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 236 (438)
.+..|+|++|.+.+|..|.+- +..|.++++++.. +.+...+||||||||||||.+||++|.++.. .|+.
T Consensus 667 PnV~WdDVGGLeevK~eIldT---IqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL-------~FlS 735 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEVKTEILDT---IQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSL-------NFLS 735 (953)
T ss_pred CccchhcccCHHHHHHHHHHH---hcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhcee-------eEEe
Confidence 356899999999999999987 6778888888763 4456789999999999999999999999887 9999
Q ss_pred eecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCC--CCchhHHHHHHHHHhhccC------CCEEEE
Q 013706 237 VQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKA--DDKDYGIEALEEIMSVMDG------GKVVVI 305 (438)
Q Consensus 237 ~~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~--~~~~~~~~~~~~ll~~~~~------~~v~vi 305 (438)
+.+.++++.|+|++|+++|++|++|+ +||||+||+|++.|.|+. ++..+..+++++||..||+ ..|+||
T Consensus 736 VKGPELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFVi 815 (953)
T KOG0736|consen 736 VKGPELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVI 815 (953)
T ss_pred ecCHHHHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEE
Confidence 99999999999999999999999875 599999999999998874 4566789999999999987 469999
Q ss_pred EecCChhHHHHhhhCcCccC--CCCcceeCCCCCH-HHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhH
Q 013706 306 FAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNS-EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE 382 (438)
Q Consensus 306 ~~~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~-~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (438)
+|||+.+.. ||+|+| |||+.+++.+... +.+..+|+...++ ++++++++...+++.+.-
T Consensus 816 GATNRPDLL-----DpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrk---------FkLdedVdL~eiAk~cp~---- 877 (953)
T KOG0736|consen 816 GATNRPDLL-----DPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRK---------FKLDEDVDLVEIAKKCPP---- 877 (953)
T ss_pred ecCCCcccc-----ChhhcCCCccceeEEecCCccHHHHHHHHHHHHHH---------ccCCCCcCHHHHHhhCCc----
Confidence 999888775 999999 9999999988865 5667788776665 477888887777776653
Q ss_pred hhhccccccchHHHHHHHHHHhhccccC----CCC----ChhhhhhccHHHHHHHHHHHHh
Q 013706 383 KQRREMNGGLVDPMLVNARENLDLRLSF----DCL----DTDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 383 ~~~~~~n~~~l~~~~~~a~~~~~~r~~~----~~~----~~~~~~~i~~~d~~~a~~~~~~ 435 (438)
...|+++..++-.|.-.|+.|... +.. .......|+++||.+|+++++|
T Consensus 878 ----~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~P 934 (953)
T KOG0736|consen 878 ----NMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQP 934 (953)
T ss_pred ----CCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCC
Confidence 355888999999888888877532 211 1223457999999999999987
No 9
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=100.00 E-value=2.3e-35 Score=270.22 Aligned_cols=253 Identities=37% Similarity=0.571 Sum_probs=210.4
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..+++++|++.+|++|+++..++.....+...|.... +...|++|+||||||||++|+++|+.+...+......+++++
T Consensus 3 ~~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~-~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~ 81 (261)
T TIGR02881 3 RELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTS-KQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVE 81 (261)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEec
Confidence 5688999999999999999988887777777666543 356789999999999999999999999877877788999999
Q ss_pred cccccccccccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCChhHHHH
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRV 316 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~ 316 (438)
++++.+.|+|+++.+++++|+.+.++||||||+|.|.+.. ++....++++.|++.|++ +.+++|+++++..++.+
T Consensus 82 ~~~l~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~---~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~ 158 (261)
T TIGR02881 82 RADLVGEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGG---EKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYF 158 (261)
T ss_pred HHHhhhhhccchHHHHHHHHHhccCCEEEEechhhhccCC---ccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHH
Confidence 9999999999999999999999999999999999997422 234567788999999986 56788888888777777
Q ss_pred hhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhh---Hhhhccccccch
Q 013706 317 IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETT---EKQRREMNGGLV 393 (438)
Q Consensus 317 ~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~n~~~l 393 (438)
...+|++++||+..|.||+|+.+|+.+|+++++.+. ++ .++++++..+...... .....+||+|.+
T Consensus 159 ~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~-------~~----~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~ 227 (261)
T TIGR02881 159 LSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKER-------EY----KLTEEAKWKLREHLYKVDQLSSREFSNARYV 227 (261)
T ss_pred HhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHc-------CC----ccCHHHHHHHHHHHHHHHhccCCCCchHHHH
Confidence 777999999999999999999999999999998763 22 3455666655443322 234568999999
Q ss_pred HHHHHHHHHHhhcccc-CCCCChhhhhhccHHHH
Q 013706 394 DPMLVNARENLDLRLS-FDCLDTDELRTITLEDL 426 (438)
Q Consensus 394 ~~~~~~a~~~~~~r~~-~~~~~~~~~~~i~~~d~ 426 (438)
+|+++.|.++++.|+. .+..+.+++..++.+||
T Consensus 228 ~n~~e~a~~~~~~r~~~~~~~~~~~~~~l~~~d~ 261 (261)
T TIGR02881 228 RNIIEKAIRRQAVRLLDKSDYSKEDLMLLKKEDL 261 (261)
T ss_pred HHHHHHHHHHHHHHHhccCCCCHHHHhccChhhC
Confidence 9999999999999975 45566788888998886
No 10
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=9.4e-36 Score=254.69 Aligned_cols=231 Identities=24% Similarity=0.308 Sum_probs=187.2
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..+++++|++..|+.-+-+++++..|.+.. .-.|++||||||||||||++||++|++... |++.+.
T Consensus 118 it~ddViGqEeAK~kcrli~~yLenPe~Fg-------~WAPknVLFyGppGTGKTm~Akalane~kv-------p~l~vk 183 (368)
T COG1223 118 ITLDDVIGQEEAKRKCRLIMEYLENPERFG-------DWAPKNVLFYGPPGTGKTMMAKALANEAKV-------PLLLVK 183 (368)
T ss_pred ccHhhhhchHHHHHHHHHHHHHhhChHHhc-------ccCcceeEEECCCCccHHHHHHHHhcccCC-------ceEEec
Confidence 468999999999999888888887776553 346899999999999999999999999887 999999
Q ss_pred cccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCC-chhHHHHHHHHHhhccC----CCEEEEEecCC
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD-KDYGIEALEEIMSVMDG----GKVVVIFAGYS 310 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~~~~----~~v~vi~~~~~ 310 (438)
++.++++++|+....++++++.| .+||+||||+|.+.-+|.-.+ .....+++|+||+.||+ ..|+.|++||+
T Consensus 184 at~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~ 263 (368)
T COG1223 184 ATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNR 263 (368)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCC
Confidence 99999999999999999999877 469999999999987664221 22345888999999997 45899999887
Q ss_pred hhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccc
Q 013706 311 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 390 (438)
Q Consensus 311 ~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 390 (438)
..+. ||++++||...|+|..|+.+|+.+|++.++++. .+..+...+.+.+.+.+.+ |
T Consensus 264 p~~L-----D~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~---------Plpv~~~~~~~~~~t~g~S---------g 320 (368)
T COG1223 264 PELL-----DPAIRSRFEEEIEFKLPNDEERLEILEYYAKKF---------PLPVDADLRYLAAKTKGMS---------G 320 (368)
T ss_pred hhhc-----CHHHHhhhhheeeeeCCChHHHHHHHHHHHHhC---------CCccccCHHHHHHHhCCCC---------c
Confidence 7665 999999999999999999999999999999876 3445566777777777554 6
Q ss_pred cchHHHHH-HHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706 391 GLVDPMLV-NARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 391 ~~l~~~~~-~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 435 (438)
|++..-+- .|..+| + .++...|+.+|++.|+++.++
T Consensus 321 RdikekvlK~aLh~A---i------~ed~e~v~~edie~al~k~r~ 357 (368)
T COG1223 321 RDIKEKVLKTALHRA---I------AEDREKVEREDIEKALKKERK 357 (368)
T ss_pred hhHHHHHHHHHHHHH---H------HhchhhhhHHHHHHHHHhhcc
Confidence 66654433 333333 1 234567899999999998554
No 11
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-35 Score=275.80 Aligned_cols=233 Identities=20% Similarity=0.287 Sum_probs=198.3
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706 158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 237 (438)
Q Consensus 158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 237 (438)
..+|+++.|.++.|+++++++..++.|.+...+| .+-|++|||.||||||||+|||++|-+.+. ||+..
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLG----GKLPKGVLLvGPPGTGKTlLARAvAGEA~V-------PFF~~ 368 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLG----GKLPKGVLLVGPPGTGKTLLARAVAGEAGV-------PFFYA 368 (752)
T ss_pred ccccccccChHHHHHHHHHHHHHhcCcHHhhhcc----CcCCCceEEeCCCCCchhHHHHHhhcccCC-------CeEec
Confidence 4569999999999999999999998887776655 456899999999999999999999998877 99999
Q ss_pred ecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC----CCEEEEEecCC
Q 013706 238 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYS 310 (438)
Q Consensus 238 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~v~vi~~~~~ 310 (438)
+++++-..++|...+.++++|..|+ +|||||||||++..+|......+.+..+|+||..||+ ..|+||+|||.
T Consensus 369 sGSEFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNf 448 (752)
T KOG0734|consen 369 SGSEFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNF 448 (752)
T ss_pred cccchhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCC
Confidence 9999999999999999999999885 5999999999999988765555899999999999997 45889998765
Q ss_pred hhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccc
Q 013706 311 EPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM 388 (438)
Q Consensus 311 ~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (438)
.+.. |+||.| |||++|.+|.|+...|.+||+.|+.+. .++.++++..++ ++.. +.
T Consensus 449 pe~L-----D~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki---------~~~~~VD~~iiA---RGT~------GF 505 (752)
T KOG0734|consen 449 PEAL-----DKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKI---------PLDEDVDPKIIA---RGTP------GF 505 (752)
T ss_pred hhhh-----hHHhcCCCccceeEecCCCCcccHHHHHHHHHhcC---------CcccCCCHhHhc---cCCC------CC
Confidence 5543 899988 999999999999999999999999875 455677776654 4443 56
Q ss_pred cccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHH
Q 013706 389 NGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 433 (438)
Q Consensus 389 n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~ 433 (438)
+|++|.|+|++|.-+| ..+....|++.|++-|-++|
T Consensus 506 sGAdLaNlVNqAAlkA---------a~dga~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 506 SGADLANLVNQAALKA---------AVDGAEMVTMKHLEFAKDRI 541 (752)
T ss_pred chHHHHHHHHHHHHHH---------HhcCcccccHHHHhhhhhhe
Confidence 6899999999988877 23445678888888877765
No 12
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.3e-35 Score=254.66 Aligned_cols=184 Identities=19% Similarity=0.254 Sum_probs=164.9
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC
Q 013706 154 MDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR 233 (438)
Q Consensus 154 ~~~~~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~ 233 (438)
.+....+|+++.|++..|+.|++. +..|-+.+.++..- ..+++++||||||||||+.||+++|.+.++ .
T Consensus 125 ~EKPNVkWsDVAGLE~AKeALKEA---VILPIKFPqlFtGk-R~PwrgiLLyGPPGTGKSYLAKAVATEAnS-------T 193 (439)
T KOG0739|consen 125 REKPNVKWSDVAGLEGAKEALKEA---VILPIKFPQLFTGK-RKPWRGILLYGPPGTGKSYLAKAVATEANS-------T 193 (439)
T ss_pred ccCCCCchhhhccchhHHHHHHhh---eeecccchhhhcCC-CCcceeEEEeCCCCCcHHHHHHHHHhhcCC-------c
Confidence 344567899999999999999987 77888888887754 358899999999999999999999999886 9
Q ss_pred EEEeecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-----CCEEEE
Q 013706 234 VTEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVI 305 (438)
Q Consensus 234 ~~~~~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-----~~v~vi 305 (438)
|+.++.++++++|+|++++.++.+|+.|+ ++||||||||+++.+|..++++.++++...||-+|++ ..+.|+
T Consensus 194 FFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVL 273 (439)
T KOG0739|consen 194 FFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVL 273 (439)
T ss_pred eEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEE
Confidence 99999999999999999999999999885 5999999999999999999999999999999999986 458888
Q ss_pred EecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccc
Q 013706 306 FAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQT 353 (438)
Q Consensus 306 ~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~ 353 (438)
+||+-.... |.++||||+.+|++|.|....|..+++.++....
T Consensus 274 gATNiPw~L-----DsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp 316 (439)
T KOG0739|consen 274 GATNIPWVL-----DSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTP 316 (439)
T ss_pred ecCCCchhH-----HHHHHHHhhcceeccCCcHHHhhhhheeccCCCc
Confidence 888776665 8899999999999999999999999999998754
No 13
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.9e-34 Score=241.42 Aligned_cols=235 Identities=21% Similarity=0.295 Sum_probs=190.4
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..++-+.|.+..+++|++. +..|-++++++..++...|+++|||||||||||.+||++|+.... .|+.++
T Consensus 144 StYeMiGgLd~QIkeIkEV---IeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c-------~firvs 213 (404)
T KOG0728|consen 144 STYEMIGGLDKQIKEIKEV---IELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC-------TFIRVS 213 (404)
T ss_pred cHHHHhccHHHHHHHHHHH---HhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcce-------EEEEec
Confidence 4566777888666666655 778889999999999999999999999999999999999998876 899999
Q ss_pred cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCC---CchhHHHHHHHHHhhccC----CCEEEEEec
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAG 308 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~v~vi~~~ 308 (438)
+++++.+|+|+....++++|-.|+ ++|||.||||++.+.|..+ +++...+..-.||.++|+ +++-||+||
T Consensus 214 gselvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimat 293 (404)
T KOG0728|consen 214 GSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMAT 293 (404)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEec
Confidence 999999999999999999998774 5999999999999877533 234445556677777776 679999997
Q ss_pred CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhc
Q 013706 309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 386 (438)
Q Consensus 309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (438)
++-++. ||+|+| |+|++|+||+|+.+.+.+|++.+-++.. +.-.++...+++.+.
T Consensus 294 nridil-----d~allrpgridrkiefp~p~e~ar~~ilkihsrkmn---------l~rgi~l~kiaekm~--------- 350 (404)
T KOG0728|consen 294 NRIDIL-----DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMN---------LTRGINLRKIAEKMP--------- 350 (404)
T ss_pred cccccc-----cHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhc---------hhcccCHHHHHHhCC---------
Confidence 776554 999998 9999999999999999999998887653 345566555555554
Q ss_pred cccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706 387 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 387 ~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 435 (438)
.+.|+++..++-.|...| -++....+|.+||+-|+.++..
T Consensus 351 gasgaevk~vcteagm~a---------lrerrvhvtqedfemav~kvm~ 390 (404)
T KOG0728|consen 351 GASGAEVKGVCTEAGMYA---------LRERRVHVTQEDFEMAVAKVMQ 390 (404)
T ss_pred CCccchhhhhhhhhhHHH---------HHHhhccccHHHHHHHHHHHHh
Confidence 455778888887776655 1234467999999999988764
No 14
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-34 Score=243.09 Aligned_cols=235 Identities=20% Similarity=0.278 Sum_probs=195.8
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706 158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 237 (438)
Q Consensus 158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 237 (438)
...+.++.|++-.|+++++. +..|..+.+++..++..+|.++|+|||||||||++|+++|+.... .|+.+
T Consensus 151 dvsy~diggld~qkqeirea---velplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a-------~firv 220 (408)
T KOG0727|consen 151 DVSYADIGGLDVQKQEIREA---VELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA-------AFIRV 220 (408)
T ss_pred CccccccccchhhHHHHHHH---HhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccch-------heeee
Confidence 35688999999999999987 667788888888899999999999999999999999999996655 89999
Q ss_pred ecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCC---CchhHHHHHHHHHhhccC----CCEEEEEe
Q 013706 238 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFA 307 (438)
Q Consensus 238 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~v~vi~~ 307 (438)
.+++++.+|.|+....+++.|..|+ ++|+||||+|++..+|-.. ......+++-.||.+||+ .++-||++
T Consensus 221 vgsefvqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvima 300 (408)
T KOG0727|consen 221 VGSEFVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMA 300 (408)
T ss_pred ccHHHHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEe
Confidence 9999999999999999999999885 5999999999999876433 345566778888999987 56899999
Q ss_pred cCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706 308 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 385 (438)
Q Consensus 308 ~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (438)
|++.+.. ||+|+| |+|++|+||.|+..++.-++.....+. .++++++.+.+...-.
T Consensus 301 tnradtl-----dpallrpgrldrkiefplpdrrqkrlvf~titskm---------~ls~~vdle~~v~rpd-------- 358 (408)
T KOG0727|consen 301 TNRADTL-----DPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKM---------NLSDEVDLEDLVARPD-------- 358 (408)
T ss_pred cCccccc-----CHhhcCCccccccccCCCCchhhhhhhHHhhhhcc---------cCCcccCHHHHhcCcc--------
Confidence 8876664 999998 999999999999999999998888765 4567777665443333
Q ss_pred ccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706 386 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 434 (438)
Q Consensus 386 ~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~ 434 (438)
.-.++++..+++.|...+. +.....|...||++|++..-
T Consensus 359 -kis~adi~aicqeagm~av---------r~nryvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 359 -KISGADINAICQEAGMLAV---------RENRYVVLQKDFEKAYKTVV 397 (408)
T ss_pred -ccchhhHHHHHHHHhHHHH---------HhcceeeeHHHHHHHHHhhc
Confidence 4457888999998887762 23456789999999988653
No 15
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-34 Score=257.65 Aligned_cols=259 Identities=23% Similarity=0.304 Sum_probs=208.0
Q ss_pred hHHHHHHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCC-CCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC
Q 013706 153 KMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVG-ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT 231 (438)
Q Consensus 153 ~~~~~~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~ 231 (438)
...+...+|++|.|.+.+++++++. +..|.++++++.... ..+++++|||||||||||++|+++|++.+.
T Consensus 83 ~p~~I~v~f~DIggLe~v~~~L~e~---VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga------ 153 (386)
T KOG0737|consen 83 PPSEIGVSFDDIGGLEEVKDALQEL---VILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGA------ 153 (386)
T ss_pred chhhceeehhhccchHHHHHHHHHH---HhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCC------
Confidence 4556778999999999999999987 788889998885322 248899999999999999999999999887
Q ss_pred CCEEEeecccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC------CCE
Q 013706 232 DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKV 302 (438)
Q Consensus 232 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------~~v 302 (438)
.|+.+..+.+.++|+|++++.++.+|..| +++||||||+|++...|++++++....+-++|...+|+ ..|
T Consensus 154 -~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rV 232 (386)
T KOG0737|consen 154 -NFINVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERV 232 (386)
T ss_pred -CcceeeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceE
Confidence 89999999999999999999999999887 56999999999999999888899999999999999987 247
Q ss_pred EEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhH
Q 013706 303 VVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE 382 (438)
Q Consensus 303 ~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (438)
.|++||++.... |.|+.||++.+++++.|+.++|..|++.+|+.+ ++.++++...++..+.+|+|.
T Consensus 233 lVlgATNRP~Dl-----DeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e---------~~e~~vD~~~iA~~t~GySGS 298 (386)
T KOG0737|consen 233 LVLGATNRPFDL-----DEAIIRRLPRRFHVGLPDAEQRRKILKVILKKE---------KLEDDVDLDEIAQMTEGYSGS 298 (386)
T ss_pred EEEeCCCCCccH-----HHHHHHhCcceeeeCCCchhhHHHHHHHHhccc---------ccCcccCHHHHHHhcCCCcHH
Confidence 777776544332 888999999999999999999999999999986 456888999999999999877
Q ss_pred hhhccccccchHHHHHHHHHH--hh---ccccCCCCC-----hhhhhhccHHHHHHHHHHHHh
Q 013706 383 KQRREMNGGLVDPMLVNAREN--LD---LRLSFDCLD-----TDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 383 ~~~~~~n~~~l~~~~~~a~~~--~~---~r~~~~~~~-----~~~~~~i~~~d~~~a~~~~~~ 435 (438)
|+...|.-+.+..+-+-.... .. ..+...... .-..+.++.+||..|...+.+
T Consensus 299 DLkelC~~Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~ 361 (386)
T KOG0737|consen 299 DLKELCRLAALRPIRELLVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSA 361 (386)
T ss_pred HHHHHHHHHhHhHHHHHHHhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhh
Confidence 776666555555554433332 00 000000000 112578999999999985543
No 16
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-33 Score=236.44 Aligned_cols=236 Identities=24% Similarity=0.333 Sum_probs=192.0
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706 158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 237 (438)
Q Consensus 158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 237 (438)
.+.++++.|.+ ++|.++++.+..|..+++.+..++..+|+++|+|||||||||++||+.|...+. .|+.+
T Consensus 167 tE~YsDiGGld---kQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~a-------TFLKL 236 (424)
T KOG0652|consen 167 TEQYSDIGGLD---KQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNA-------TFLKL 236 (424)
T ss_pred cccccccccHH---HHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccc-------hHHHh
Confidence 35688999998 555666666888999999999999999999999999999999999999998776 89999
Q ss_pred ecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHH---HHHHHHhhccC----CCEEEEEe
Q 013706 238 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIE---ALEEIMSVMDG----GKVVVIFA 307 (438)
Q Consensus 238 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~---~~~~ll~~~~~----~~v~vi~~ 307 (438)
.+..++..|+|+..+.++.+|..|+ ++||||||+|.+..+|..++..-.++ ..-.||.++|+ .++-||++
T Consensus 237 AgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAA 316 (424)
T KOG0652|consen 237 AGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAA 316 (424)
T ss_pred cchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEee
Confidence 9999999999999999999998875 59999999999999887554333334 44455666665 57999999
Q ss_pred cCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706 308 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 385 (438)
Q Consensus 308 ~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (438)
|++-++. ||+|+| |++++|+||.|+.+.|.+|+..+.++.. .++++..+.++.-+.
T Consensus 317 TNRvDiL-----DPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMn---------v~~DvNfeELaRsTd-------- 374 (424)
T KOG0652|consen 317 TNRVDIL-----DPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMN---------VSDDVNFEELARSTD-------- 374 (424)
T ss_pred ccccccc-----CHHHhhcccccccccCCCCChHHHHHHHHHhhhhcC---------CCCCCCHHHHhhccc--------
Confidence 7776664 999988 9999999999999999999999888763 456666555443332
Q ss_pred ccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706 386 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 386 ~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 435 (438)
..||+.++.++-.|...+..| +...|+-+||-+++-.++.
T Consensus 375 -dFNGAQcKAVcVEAGMiALRr---------~atev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 375 -DFNGAQCKAVCVEAGMIALRR---------GATEVTHEDFMEGILEVQA 414 (424)
T ss_pred -ccCchhheeeehhhhHHHHhc---------ccccccHHHHHHHHHHHHH
Confidence 678999999988888777555 3356889999999887764
No 17
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-32 Score=273.04 Aligned_cols=240 Identities=24% Similarity=0.345 Sum_probs=199.7
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706 158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 237 (438)
Q Consensus 158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 237 (438)
...|++++|++.+++.+++.+ .++..+++.+...+..++.++|||||||||||++|+++|.++.. +|+.+
T Consensus 238 ~v~~~diggl~~~k~~l~e~v---~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~-------~fi~v 307 (494)
T COG0464 238 DVTLDDIGGLEEAKEELKEAI---ETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRS-------RFISV 307 (494)
T ss_pred CcceehhhcHHHHHHHHHHHH---HhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCC-------eEEEe
Confidence 457899999999999999984 44556666555555678889999999999999999999998776 99999
Q ss_pred ecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC----CCEEEEEecCC
Q 013706 238 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYS 310 (438)
Q Consensus 238 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~v~vi~~~~~ 310 (438)
..+++.++|+|+++++++.+|..|+ +|||||||+|++.+.++.+.+....+++++|+..|++ ..|+||++|+.
T Consensus 308 ~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~ 387 (494)
T COG0464 308 KGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNR 387 (494)
T ss_pred eCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCC
Confidence 9999999999999999999999986 6999999999999999877776678999999999985 56888888776
Q ss_pred hhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccc
Q 013706 311 EPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM 388 (438)
Q Consensus 311 ~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (438)
.... ||+++| ||+.+|.||+|+.+++.+|++.++.+... .+..+++.+.+...+.+ .
T Consensus 388 p~~l-----d~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~-------~~~~~~~~~~l~~~t~~---------~ 446 (494)
T COG0464 388 PDDL-----DPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKP-------PLAEDVDLEELAEITEG---------Y 446 (494)
T ss_pred cccc-----CHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCC-------cchhhhhHHHHHHHhcC---------C
Confidence 6654 999999 99999999999999999999999986431 23345566666665554 4
Q ss_pred cccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHhc
Q 013706 389 NGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL 436 (438)
Q Consensus 389 n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~~ 436 (438)
.++++..++..|...+..+.. ...++.+||.+|++.+.|.
T Consensus 447 sgadi~~i~~ea~~~~~~~~~--------~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 447 SGADIAALVREAALEALREAR--------RREVTLDDFLDALKKIKPS 486 (494)
T ss_pred CHHHHHHHHHHHHHHHHHHhc--------cCCccHHHHHHHHHhcCCC
Confidence 478889999999888743321 4579999999999998774
No 18
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3.3e-32 Score=261.82 Aligned_cols=217 Identities=20% Similarity=0.285 Sum_probs=187.9
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
-.|+++.|+.++++.+++. +..|.+++..+...+.+.+.++|||||||||||.+|.++|...+. .|+.+.
T Consensus 664 i~w~digg~~~~k~~l~~~---i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~-------~fisvK 733 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEV---IEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNL-------RFISVK 733 (952)
T ss_pred CCceecccHHHHHHHHHHH---HhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCe-------eEEEec
Confidence 5699999999999999998 666789999998888888999999999999999999999998776 899999
Q ss_pred cccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC----CCEEEEEecCCh
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSE 311 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~v~vi~~~~~~ 311 (438)
+.+++++|+|.++..++.+|++| ++||||+||+|++.|+|+-++.....+++|+||++||+ ..|.|++||++.
T Consensus 734 GPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRp 813 (952)
T KOG0735|consen 734 GPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRP 813 (952)
T ss_pred CHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCc
Confidence 99999999999999999999987 57999999999999999988888999999999999998 468888888777
Q ss_pred hHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhcccc
Q 013706 312 PMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN 389 (438)
Q Consensus 312 ~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 389 (438)
++. ||||+| |+|+.+.-+.|+..||.+|++...+.. .++..++.+-++..+.+++
T Consensus 814 dli-----DpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~---------~~~~~vdl~~~a~~T~g~t--------- 870 (952)
T KOG0735|consen 814 DLI-----DPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSL---------LKDTDVDLECLAQKTDGFT--------- 870 (952)
T ss_pred ccc-----CHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhcc---------CCccccchHHHhhhcCCCc---------
Confidence 664 999999 999999999999999999999877654 3456677777777777666
Q ss_pred ccchHHHHHHHHHHhhccc
Q 013706 390 GGLVDPMLVNARENLDLRL 408 (438)
Q Consensus 390 ~~~l~~~~~~a~~~~~~r~ 408 (438)
|+++..++..|...++.++
T Consensus 871 gADlq~ll~~A~l~avh~~ 889 (952)
T KOG0735|consen 871 GADLQSLLYNAQLAAVHEI 889 (952)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 5666677766655554443
No 19
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.98 E-value=2.4e-31 Score=259.32 Aligned_cols=235 Identities=21% Similarity=0.318 Sum_probs=183.8
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|++++|++.+|+.+.+...... ..... .+...|+++|||||||||||++|+++|++++. +++.++
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~~~--~~~~~----~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~-------~~~~l~ 291 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTSFS--KQASN----YGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL-------PLLRLD 291 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHhh--HHHHh----cCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-------CEEEEE
Confidence 468899999999999987543321 11122 34457899999999999999999999999876 899999
Q ss_pred cccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCC-CCchhHHHHHHHHHhhccC--CCEEEEEecCChh
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKA-DDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEP 312 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~-~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~ 312 (438)
.+.+.++|+|+++.+++++|+.| .+|||||||||++.+.+++ +.+....++++.|+..|++ ..++||++|+...
T Consensus 292 ~~~l~~~~vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~ 371 (489)
T CHL00195 292 VGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNID 371 (489)
T ss_pred hHHhcccccChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChh
Confidence 99999999999999999999865 5699999999999876543 3455677899999999975 4577777765433
Q ss_pred HHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccc
Q 013706 313 MKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 390 (438)
Q Consensus 313 ~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 390 (438)
.+ ||+++| ||+.+|+++.|+.++|.+|++.++.+... ....+.+.+.++..+. ..+|
T Consensus 372 --~L---d~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~-------~~~~~~dl~~La~~T~---------GfSG 430 (489)
T CHL00195 372 --LL---PLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRP-------KSWKKYDIKKLSKLSN---------KFSG 430 (489)
T ss_pred --hC---CHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCC-------CcccccCHHHHHhhcC---------CCCH
Confidence 33 899987 99999999999999999999999987421 1112344555555555 4557
Q ss_pred cchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHhcC
Q 013706 391 GLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRLG 437 (438)
Q Consensus 391 ~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~~~ 437 (438)
+++.+++..|...+.. +.+.++.+||.+|++.+.|+-
T Consensus 431 AdI~~lv~eA~~~A~~----------~~~~lt~~dl~~a~~~~~Pls 467 (489)
T CHL00195 431 AEIEQSIIEAMYIAFY----------EKREFTTDDILLALKQFIPLA 467 (489)
T ss_pred HHHHHHHHHHHHHHHH----------cCCCcCHHHHHHHHHhcCCCc
Confidence 8888998888877632 225689999999999999973
No 20
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.5e-31 Score=263.16 Aligned_cols=234 Identities=22% Similarity=0.312 Sum_probs=195.1
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706 158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 237 (438)
Q Consensus 158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 237 (438)
...|+|+.|.+++|++|.+++..+..|.++.++| +..|+++||.||||||||+|||++|.+.+. ||+.+
T Consensus 307 ~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lG----AKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-------PF~sv 375 (774)
T KOG0731|consen 307 GVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELG----AKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------PFFSV 375 (774)
T ss_pred CCccccccCcHHHHHHHHHHHHHhcCHHHHHHcC----CcCcCceEEECCCCCcHHHHHHHHhcccCC-------ceeee
Confidence 3679999999999999999999998888887755 568899999999999999999999999887 99999
Q ss_pred ecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCC----CCchhHHHHHHHHHhhccC----CCEEEEE
Q 013706 238 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKA----DDKDYGIEALEEIMSVMDG----GKVVVIF 306 (438)
Q Consensus 238 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~----~~~~~~~~~~~~ll~~~~~----~~v~vi~ 306 (438)
++++++..++|-...+++++|..|+ +||+||||||.+...|++ ..+......+|+||..||+ +.|+|++
T Consensus 376 SGSEFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a 455 (774)
T KOG0731|consen 376 SGSEFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLA 455 (774)
T ss_pred chHHHHHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEe
Confidence 9999999999999999999999986 499999999999998852 3456667889999999997 5689999
Q ss_pred ecCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhh
Q 013706 307 AGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ 384 (438)
Q Consensus 307 ~~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (438)
+|++.++. ||||+| |||++|.++.|+..+|.+|++.++++.. +. .++..+..++....
T Consensus 456 ~tnr~d~l-----d~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~---------~~--~e~~dl~~~a~~t~---- 515 (774)
T KOG0731|consen 456 ATNRPDIL-----DPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKK---------LD--DEDVDLSKLASLTP---- 515 (774)
T ss_pred ccCCcccc-----CHHhcCCCccccceeccCCchhhhHHHHHHHhhccC---------CC--cchhhHHHHHhcCC----
Confidence 98877775 999999 9999999999999999999999998753 22 22333444444332
Q ss_pred hccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHH
Q 013706 385 RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 433 (438)
Q Consensus 385 ~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~ 433 (438)
...|++|.|+++.|.-.++. .....|+.+||..|++.+
T Consensus 516 --gf~gadl~n~~neaa~~a~r---------~~~~~i~~~~~~~a~~Rv 553 (774)
T KOG0731|consen 516 --GFSGADLANLCNEAALLAAR---------KGLREIGTKDLEYAIERV 553 (774)
T ss_pred --CCcHHHHHhhhhHHHHHHHH---------hccCccchhhHHHHHHHH
Confidence 45578888888887776633 345678889999888843
No 21
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.97 E-value=2.8e-31 Score=253.76 Aligned_cols=236 Identities=21% Similarity=0.283 Sum_probs=189.0
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706 158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 237 (438)
Q Consensus 158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 237 (438)
...|++++|++.++++|++.+ ..+..+++.+...+..+|+++|||||||||||++|+++|+.+.. +|+.+
T Consensus 141 ~v~~~digGl~~~k~~l~~~v---~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~-------~fi~i 210 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAV---ELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA-------TFIRV 210 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHH---HHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC-------CEEEE
Confidence 457999999999999999874 44455555555566678999999999999999999999998765 88999
Q ss_pred ecccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCC---CchhHHHHHHHHHhhccC----CCEEEEEe
Q 013706 238 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFA 307 (438)
Q Consensus 238 ~~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~v~vi~~ 307 (438)
.++.+..+|+|+++..++.+|..| .++||||||+|.+.+++.+. .+....+++..|+..|++ ..++||++
T Consensus 211 ~~s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~a 290 (398)
T PTZ00454 211 VGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMA 290 (398)
T ss_pred ehHHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEe
Confidence 999999999999999999999876 46999999999998876432 233456778889988875 46788888
Q ss_pred cCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706 308 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 385 (438)
Q Consensus 308 ~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (438)
|+... .+ ||+++| ||+.+|+|+.|+.++|.+|++.++.+. .+..+++.+.+...+.
T Consensus 291 TN~~d--~L---DpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~---------~l~~dvd~~~la~~t~-------- 348 (398)
T PTZ00454 291 TNRAD--TL---DPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKM---------NLSEEVDLEDFVSRPE-------- 348 (398)
T ss_pred cCCch--hC---CHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcC---------CCCcccCHHHHHHHcC--------
Confidence 76543 33 999887 999999999999999999999988764 3445566666655544
Q ss_pred ccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706 386 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 386 ~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 435 (438)
..+++++.+++..|...+..+ +...|+.+||.+|++.+..
T Consensus 349 -g~sgaDI~~l~~eA~~~A~r~---------~~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 349 -KISAADIAAICQEAGMQAVRK---------NRYVILPKDFEKGYKTVVR 388 (398)
T ss_pred -CCCHHHHHHHHHHHHHHHHHc---------CCCccCHHHHHHHHHHHHh
Confidence 455888999999998877433 2357999999999999754
No 22
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.7e-32 Score=237.08 Aligned_cols=235 Identities=19% Similarity=0.320 Sum_probs=188.8
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706 158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 237 (438)
Q Consensus 158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 237 (438)
.+.+.++.|.++.+++|++. +..|..+++.+..++..+|++|+|||+||||||++|+++|+.... .|+.+
T Consensus 181 ~Ety~diGGle~QiQEiKEs---vELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSA-------TFlRv 250 (440)
T KOG0726|consen 181 QETYADIGGLESQIQEIKES---VELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSA-------TFLRV 250 (440)
T ss_pred hhhhcccccHHHHHHHHHHh---hcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccch-------hhhhh
Confidence 46799999999877777765 778888899988899999999999999999999999999997655 89999
Q ss_pred ecccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCCchhHHHHHH---HHHhhccC----CCEEEEEe
Q 013706 238 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALE---EIMSVMDG----GKVVVIFA 307 (438)
Q Consensus 238 ~~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~~~~~~~~~~---~ll~~~~~----~~v~vi~~ 307 (438)
-+++++.+|.|+..+.++++|.-| .++|+||||||.+..+|..+++...+++.. .||.++|+ ++|-||+|
T Consensus 251 vGseLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimA 330 (440)
T KOG0726|consen 251 VGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMA 330 (440)
T ss_pred hhHHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEe
Confidence 999999999999999999999877 469999999999999887554443344444 55556665 78999999
Q ss_pred cCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706 308 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 385 (438)
Q Consensus 308 ~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (438)
|+. ++.+ ||+|.| |+|++|+||.|+..-+..||..+..+. .+..+++.+.+..--.
T Consensus 331 Tnr--ie~L---DPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~M---------tl~~dVnle~li~~kd-------- 388 (440)
T KOG0726|consen 331 TNR--IETL---DPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRM---------TLAEDVNLEELIMTKD-------- 388 (440)
T ss_pred ccc--cccc---CHhhcCCCccccccccCCCchhhhceeEEEeeccc---------chhccccHHHHhhccc--------
Confidence 655 4444 999998 999999999999999999998777654 5556666554433222
Q ss_pred ccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706 386 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 434 (438)
Q Consensus 386 ~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~ 434 (438)
..+|+++..++-.|-..| -++....++.+||..|.+.+.
T Consensus 389 -dlSGAdIkAictEaGllA---------lRerRm~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 389 -DLSGADIKAICTEAGLLA---------LRERRMKVTMEDFKKAKEKVL 427 (440)
T ss_pred -ccccccHHHHHHHHhHHH---------HHHHHhhccHHHHHHHHHHHH
Confidence 455788888887776655 123456899999999998875
No 23
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.6e-32 Score=233.67 Aligned_cols=235 Identities=20% Similarity=0.264 Sum_probs=188.0
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..+.++.|-.+.++.+++. +..|..+++.+..++..+|+++|+|||||||||++||++|+.... +|+.+-
T Consensus 174 vty~dvggckeqieklrev---ve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtda-------cfirvi 243 (435)
T KOG0729|consen 174 VTYSDVGGCKEQIEKLREV---VELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA-------CFIRVI 243 (435)
T ss_pred cccccccchHHHHHHHHHH---HhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCc-------eEEeeh
Confidence 4677888876555555554 777888888888899999999999999999999999999986655 899999
Q ss_pred cccccccccccchHHHHHHHHHccC---cEEEEeCcccccCCCCCCC---chhHHHHHHHHHhhccC----CCEEEEEec
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEAEG---GILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFAG 308 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a~~---~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~~~~----~~v~vi~~~ 308 (438)
+++++.+|+|+....++++|+.|+. ||||+||||.+...|-.++ .....+..-.|+.++|+ +++-|++||
T Consensus 244 gselvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmat 323 (435)
T KOG0729|consen 244 GSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMAT 323 (435)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeec
Confidence 9999999999999999999999965 9999999999998765432 33344444566666776 789999998
Q ss_pred CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhc
Q 013706 309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 386 (438)
Q Consensus 309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (438)
++.... ||+|+| |++++++|..|+.+.+..|++.+.+.. ...-++..+.++.++...+
T Consensus 324 nrpdtl-----dpallrpgrldrkvef~lpdlegrt~i~kihaksm---------sverdir~ellarlcpnst------ 383 (435)
T KOG0729|consen 324 NRPDTL-----DPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSM---------SVERDIRFELLARLCPNST------ 383 (435)
T ss_pred CCCCCc-----CHhhcCCcccccceeccCCcccccceeEEEecccc---------ccccchhHHHHHhhCCCCc------
Confidence 877665 999998 999999999999999999999887764 3334566677777777655
Q ss_pred cccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706 387 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 387 ~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 435 (438)
|+++++++-.|..-|. .......|.+||.+|+.++.+
T Consensus 384 ---gaeirsvcteagmfai---------rarrk~atekdfl~av~kvvk 420 (435)
T KOG0729|consen 384 ---GAEIRSVCTEAGMFAI---------RARRKVATEKDFLDAVNKVVK 420 (435)
T ss_pred ---chHHHHHHHHhhHHHH---------HHHhhhhhHHHHHHHHHHHHH
Confidence 6778888877766541 223456889999999988754
No 24
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=3.6e-31 Score=275.33 Aligned_cols=246 Identities=22% Similarity=0.303 Sum_probs=195.5
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706 158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 237 (438)
Q Consensus 158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 237 (438)
...|++++|++.+++++.+.+. .+..+++.+...+..++.++|||||||||||++|+++|+++.. +|+.+
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~---~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~-------~fi~v 518 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVE---WPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA-------NFIAV 518 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHH---hhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC-------CEEEE
Confidence 3478999999999999998744 4445555555556678899999999999999999999998865 89999
Q ss_pred ecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCC-CchhHHHHHHHHHhhccC----CCEEEEEecC
Q 013706 238 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD-DKDYGIEALEEIMSVMDG----GKVVVIFAGY 309 (438)
Q Consensus 238 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~~~~----~~v~vi~~~~ 309 (438)
+++++.++|+|++++.++.+|..|+ ++||||||+|++.+.++.. .+....+++++|+..|++ ..++||+||+
T Consensus 519 ~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn 598 (733)
T TIGR01243 519 RGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATN 598 (733)
T ss_pred ehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCC
Confidence 9999999999999999999998774 5999999999999988754 345667899999999985 5788888877
Q ss_pred ChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhcc
Q 013706 310 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 387 (438)
Q Consensus 310 ~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (438)
..... ||+++| ||+.+|+||.|+.++|.+|++.++.+. .+..+++.+.++..+.+++
T Consensus 599 ~~~~l-----d~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~---------~~~~~~~l~~la~~t~g~s------- 657 (733)
T TIGR01243 599 RPDIL-----DPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM---------PLAEDVDLEELAEMTEGYT------- 657 (733)
T ss_pred ChhhC-----CHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC---------CCCccCCHHHHHHHcCCCC-------
Confidence 65543 999997 999999999999999999999887654 3445566667666666554
Q ss_pred ccccchHHHHHHHHHHhhccccCCC----CC-----hhhhhhccHHHHHHHHHHHHhc
Q 013706 388 MNGGLVDPMLVNARENLDLRLSFDC----LD-----TDELRTITLEDLEAGLKLLLRL 436 (438)
Q Consensus 388 ~n~~~l~~~~~~a~~~~~~r~~~~~----~~-----~~~~~~i~~~d~~~a~~~~~~~ 436 (438)
|+++.+++..|...+..+..... .. ..+...|+.+||.+|++.++|.
T Consensus 658 --gadi~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps 713 (733)
T TIGR01243 658 --GADIEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPS 713 (733)
T ss_pred --HHHHHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCC
Confidence 67778888877777665532111 00 1122479999999999998874
No 25
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=9.2e-31 Score=251.88 Aligned_cols=237 Identities=22% Similarity=0.313 Sum_probs=190.3
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706 158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 237 (438)
Q Consensus 158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 237 (438)
...|++++|.+..++.+.+. +..+..++..+...+..+|+++|||||||||||++|+++|+.+.. +|+.+
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~---i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~-------~~i~v 196 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREA---VELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA-------TFIRV 196 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHH---HHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC-------CEEEe
Confidence 34688999999999999887 444556666666677788999999999999999999999998865 89999
Q ss_pred ecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCC---chhHHHHHHHHHhhccC----CCEEEEEe
Q 013706 238 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFA 307 (438)
Q Consensus 238 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~~~~----~~v~vi~~ 307 (438)
+++++..+|+|++++.++.+|+.+. ++||||||+|.+.+++.++. +....+.+..|+..+++ +.++||++
T Consensus 197 ~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~a 276 (389)
T PRK03992 197 VGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAA 276 (389)
T ss_pred ehHHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEe
Confidence 9999999999999999999998774 59999999999998765432 23345667788887774 57888888
Q ss_pred cCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706 308 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 385 (438)
Q Consensus 308 ~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (438)
|+.... + +|++++ ||+..|+|++|+.++|.+|++.++.+. .+..+++.+.++..+.+
T Consensus 277 Tn~~~~--l---d~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~---------~~~~~~~~~~la~~t~g------- 335 (389)
T PRK03992 277 TNRIDI--L---DPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKM---------NLADDVDLEELAELTEG------- 335 (389)
T ss_pred cCChhh--C---CHHHcCCccCceEEEECCCCHHHHHHHHHHHhccC---------CCCCcCCHHHHHHHcCC-------
Confidence 766432 3 899987 999999999999999999999988754 33445566666666654
Q ss_pred ccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHhc
Q 013706 386 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL 436 (438)
Q Consensus 386 ~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~~ 436 (438)
.+++++++++.+|...+..+ ....|+.+||.+|++.+++.
T Consensus 336 --~sgadl~~l~~eA~~~a~~~---------~~~~i~~~d~~~A~~~~~~~ 375 (389)
T PRK03992 336 --ASGADLKAICTEAGMFAIRD---------DRTEVTMEDFLKAIEKVMGK 375 (389)
T ss_pred --CCHHHHHHHHHHHHHHHHHc---------CCCCcCHHHHHHHHHHHhcc
Confidence 44788899999888877433 23469999999999999874
No 26
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=2.2e-30 Score=248.79 Aligned_cols=235 Identities=19% Similarity=0.295 Sum_probs=186.4
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|++|.|++..++++++.+. .+..++..+..++..++.++|||||||||||++|+++|+++.. +|+.+.
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v~---lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~-------~fi~V~ 249 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAVE---LPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA-------TFLRVV 249 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHHH---hhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC-------CEEEEe
Confidence 578999999999999998744 4556666666666778899999999999999999999998765 889999
Q ss_pred cccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCC---chhHHHHHHHHHhhccC----CCEEEEEec
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFAG 308 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~~~~----~~v~vi~~~ 308 (438)
++++.++|+|+++..++.+|..| .++||||||||.+..++.... .....+.+..|+..+++ ..+.||++|
T Consensus 250 ~seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~AT 329 (438)
T PTZ00361 250 GSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMAT 329 (438)
T ss_pred cchhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEec
Confidence 99999999999999999999877 358999999999998765322 23344566778877764 568888887
Q ss_pred CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhc
Q 013706 309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 386 (438)
Q Consensus 309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (438)
+.. +.+ ||+++| ||+.+|+|+.|+.+++.+|++.++.+. .+..+++.+.+...+.
T Consensus 330 Nr~--d~L---DpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~---------~l~~dvdl~~la~~t~--------- 386 (438)
T PTZ00361 330 NRI--ESL---DPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM---------TLAEDVDLEEFIMAKD--------- 386 (438)
T ss_pred CCh--HHh---hHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC---------CCCcCcCHHHHHHhcC---------
Confidence 653 333 899876 999999999999999999999988764 3445566666655555
Q ss_pred cccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706 387 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 387 ~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 435 (438)
..+++++++++..|...|..+ ....|+.+||.+|+++++.
T Consensus 387 g~sgAdI~~i~~eA~~~Alr~---------~r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 387 ELSGADIKAICTEAGLLALRE---------RRMKVTQADFRKAKEKVLY 426 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHh---------cCCccCHHHHHHHHHHHHh
Confidence 445788899999888877332 3457999999999999854
No 27
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=8e-30 Score=248.00 Aligned_cols=260 Identities=19% Similarity=0.227 Sum_probs=190.9
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCc---CCCCE
Q 013706 158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---PTDRV 234 (438)
Q Consensus 158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~---~~~~~ 234 (438)
...|++|+|++..++++++. +..+..+++.+...+..+|+++|||||||||||++|+++|+.+...... ....|
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~---v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~f 254 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDA---VELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYF 254 (512)
T ss_pred CCCHHHcCChHHHHHHHHHH---HHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeE
Confidence 35789999999999999887 4455666666666777789999999999999999999999998643211 23457
Q ss_pred EEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCC-CchhHHHHHHHHHhhccC----CCE
Q 013706 235 TEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKAD-DKDYGIEALEEIMSVMDG----GKV 302 (438)
Q Consensus 235 ~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~~~~----~~v 302 (438)
+.+..+++.++|+|++++.++.+|+.+ .++||||||+|.+.++++.+ +++....++++||..||+ +.+
T Consensus 255 l~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~V 334 (512)
T TIGR03689 255 LNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNV 334 (512)
T ss_pred EeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCce
Confidence 788888999999999999999998765 35899999999999877643 455667889999999986 568
Q ss_pred EEEEecCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHH-
Q 013706 303 VVIFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKE- 379 (438)
Q Consensus 303 ~vi~~~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 379 (438)
+||++||.... + ||+++| ||+.+|+|+.|+.+++.+|++.++...... ...+......+...+..++...
T Consensus 335 iVI~ATN~~d~--L---DpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l--~~~l~~~~g~~~a~~~al~~~av 407 (512)
T TIGR03689 335 IVIGASNREDM--I---DPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPL--DADLAEFDGDREATAAALIQRAV 407 (512)
T ss_pred EEEeccCChhh--C---CHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCc--hHHHHHhcCCCHHHHHHHHHHHH
Confidence 88888765443 3 999998 999999999999999999999998752110 0000000111222233333221
Q ss_pred ---hh-H------------------hhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHH
Q 013706 380 ---TT-E------------------KQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 432 (438)
Q Consensus 380 ---~~-~------------------~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~ 432 (438)
++ . ...+...|+++.++|++|...+..+.-.. ....++.+|+..|+..
T Consensus 408 ~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~-----~~~~~~~~~l~~a~~~ 477 (512)
T TIGR03689 408 DHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITG-----GQVGLRIEHLLAAVLD 477 (512)
T ss_pred HHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhc-----CCcCcCHHHHHHHHHH
Confidence 11 0 01245679999999999999987775421 1247888898888764
No 28
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.3e-31 Score=248.22 Aligned_cols=218 Identities=22% Similarity=0.312 Sum_probs=185.9
Q ss_pred CCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHccC---------
Q 013706 193 KVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEG--------- 263 (438)
Q Consensus 193 ~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~--------- 263 (438)
.++..+.+++|||||||||||++||.|.+.|+... | -.+++++++++|+|+++.+++++|..|+.
T Consensus 250 ~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNAre-----P-KIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~S 323 (744)
T KOG0741|consen 250 QLGIKHVKGILLYGPPGTGKTLIARQIGKMLNARE-----P-KIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANS 323 (744)
T ss_pred HcCccceeeEEEECCCCCChhHHHHHHHHHhcCCC-----C-cccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccC
Confidence 45667899999999999999999999999997522 2 34788999999999999999999987731
Q ss_pred --cEEEEeCcccccCCCCCC--CchhHHHHHHHHHhhccC----CCEEEEEecCChhHHHHhhhCcCccC--CCCcceeC
Q 013706 264 --GILFVDEAYRLIPMQKAD--DKDYGIEALEEIMSVMDG----GKVVVIFAGYSEPMKRVIASNEGFCR--RVTKFFHF 333 (438)
Q Consensus 264 --~il~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~~~~----~~v~vi~~~~~~~~~~~~~~~p~l~~--R~~~~i~~ 333 (438)
-||++||||+++.+|++. +......++|+||..||+ +++.||+.|++.++. |.||+| ||...+++
T Consensus 324 gLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlI-----DEALLRPGRlEVqmEI 398 (744)
T KOG0741|consen 324 GLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLI-----DEALLRPGRLEVQMEI 398 (744)
T ss_pred CceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhH-----HHHhcCCCceEEEEEE
Confidence 599999999999998865 356778999999999998 789999998887775 889988 99999999
Q ss_pred CCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCC-
Q 013706 334 NDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDC- 412 (438)
Q Consensus 334 ~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~- 412 (438)
..|+...|.+|++.+.++..+ .-.++.+++.+.++.+++.++ |+++..+|..|...|..|.....
T Consensus 399 sLPDE~gRlQIl~IHT~rMre-----~~~l~~dVdl~elA~lTKNfS---------GAEleglVksA~S~A~nR~vk~~~ 464 (744)
T KOG0741|consen 399 SLPDEKGRLQILKIHTKRMRE-----NNKLSADVDLKELAALTKNFS---------GAELEGLVKSAQSFAMNRHVKAGG 464 (744)
T ss_pred eCCCccCceEEEEhhhhhhhh-----cCCCCCCcCHHHHHHHhcCCc---------hhHHHHHHHHHHHHHHHhhhccCc
Confidence 999999999999998888753 226788899999999999876 78889999999999999864322
Q ss_pred ---CC--hhhhhhccHHHHHHHHHHHHh
Q 013706 413 ---LD--TDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 413 ---~~--~~~~~~i~~~d~~~a~~~~~~ 435 (438)
.+ ..+...|+..||..|++.++|
T Consensus 465 ~~~~~~~~~e~lkV~r~DFl~aL~dVkP 492 (744)
T KOG0741|consen 465 KVEVDPVAIENLKVTRGDFLNALEDVKP 492 (744)
T ss_pred ceecCchhhhheeecHHHHHHHHHhcCc
Confidence 22 334568999999999999988
No 29
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.5e-30 Score=251.04 Aligned_cols=235 Identities=23% Similarity=0.326 Sum_probs=199.7
Q ss_pred HHHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEE
Q 013706 157 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 236 (438)
Q Consensus 157 ~~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 236 (438)
....|.++.|.+.+|+++.+++..++.|.++..+|- .-|++++|+||||||||++||++|.+.+. ||+.
T Consensus 145 ~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGa----kiPkGvlLvGpPGTGKTLLAkAvAgEA~V-------PFf~ 213 (596)
T COG0465 145 VKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGA----KIPKGVLLVGPPGTGKTLLAKAVAGEAGV-------PFFS 213 (596)
T ss_pred cCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhccc----ccccceeEecCCCCCcHHHHHHHhcccCC-------Ccee
Confidence 446799999999999999999999988888877654 57899999999999999999999998877 9999
Q ss_pred eecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCC---CCchhHHHHHHHHHhhccC----CCEEEEE
Q 013706 237 VQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKA---DDKDYGIEALEEIMSVMDG----GKVVVIF 306 (438)
Q Consensus 237 ~~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~~~~----~~v~vi~ 306 (438)
+++++++..++|-....+|.+|++|+ +||+||||+|.+...|+. .+++.-...+|+||..||+ ..|++++
T Consensus 214 iSGS~FVemfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gvivia 293 (596)
T COG0465 214 ISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIA 293 (596)
T ss_pred ccchhhhhhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEe
Confidence 99999999999999999999999986 599999999999998863 3566777899999999997 2488888
Q ss_pred ecCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhh
Q 013706 307 AGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ 384 (438)
Q Consensus 307 ~~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (438)
+|++.++. ||||+| |||+.|.++.|+...|++|++.+++.. .+++.++...++..+.+.+
T Consensus 294 aTNRpdVl-----D~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~---------~l~~~Vdl~~iAr~tpGfs---- 355 (596)
T COG0465 294 ATNRPDVL-----DPALLRPGRFDRQILVELPDIKGREQILKVHAKNK---------PLAEDVDLKKIARGTPGFS---- 355 (596)
T ss_pred cCCCcccc-----hHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcC---------CCCCcCCHHHHhhhCCCcc----
Confidence 87777665 999999 999999999999999999999888764 4567788777777766555
Q ss_pred hccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706 385 RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 434 (438)
Q Consensus 385 ~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~ 434 (438)
++++.|++..|.-.++.+ ....|+..||.+|.+++.
T Consensus 356 -----GAdL~nl~NEAal~aar~---------n~~~i~~~~i~ea~drv~ 391 (596)
T COG0465 356 -----GADLANLLNEAALLAARR---------NKKEITMRDIEEAIDRVI 391 (596)
T ss_pred -----cchHhhhHHHHHHHHHHh---------cCeeEeccchHHHHHHHh
Confidence 677788887777666333 446788888888887764
No 30
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.96 E-value=3.5e-29 Score=249.45 Aligned_cols=234 Identities=22% Similarity=0.331 Sum_probs=184.7
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706 158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 237 (438)
Q Consensus 158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 237 (438)
...|++++|++.+++++.+++..+..+......+ ...++++||+||||||||++|+++|++++. +++.+
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g----~~~~~giLL~GppGtGKT~la~alA~~~~~-------~~~~i 119 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG----AKIPKGVLLVGPPGTGKTLLAKAVAGEAGV-------PFFSI 119 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC----CCCCCcEEEECCCCCCHHHHHHHHHHHcCC-------Ceeec
Confidence 3578999999999999999888766555554433 457889999999999999999999998765 89999
Q ss_pred ecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCC---CchhHHHHHHHHHhhccC----CCEEEEEe
Q 013706 238 QRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFA 307 (438)
Q Consensus 238 ~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~v~vi~~ 307 (438)
+++++...+.|.+++.++.+|+.+. ++||||||+|.+.++++.. .+.....+++.|+..||+ +.++||++
T Consensus 120 ~~~~~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~a 199 (495)
T TIGR01241 120 SGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAA 199 (495)
T ss_pred cHHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEe
Confidence 9999999999999999999998874 5999999999999887642 244556889999999975 45888888
Q ss_pred cCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706 308 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 385 (438)
Q Consensus 308 ~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (438)
|+.... + ||+++| ||+..|+++.|+.++|.+|++.++.+.. +..+++.+.++..+.
T Consensus 200 Tn~~~~--l---d~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~---------~~~~~~l~~la~~t~-------- 257 (495)
T TIGR01241 200 TNRPDV--L---DPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKK---------LAPDVDLKAVARRTP-------- 257 (495)
T ss_pred cCChhh--c---CHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCC---------CCcchhHHHHHHhCC--------
Confidence 765443 3 899987 9999999999999999999999987642 223333333333333
Q ss_pred ccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706 386 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 434 (438)
Q Consensus 386 ~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~ 434 (438)
..+++++.+++++|...+..+ ....|+.+||++|++.+.
T Consensus 258 -G~sgadl~~l~~eA~~~a~~~---------~~~~i~~~~l~~a~~~~~ 296 (495)
T TIGR01241 258 -GFSGADLANLLNEAALLAARK---------NKTEITMNDIEEAIDRVI 296 (495)
T ss_pred -CCCHHHHHHHHHHHHHHHHHc---------CCCCCCHHHHHHHHHHHh
Confidence 445788999998887655222 235689999999998775
No 31
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=3.9e-28 Score=244.18 Aligned_cols=232 Identities=23% Similarity=0.342 Sum_probs=184.7
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|++++|.+.+++++.+++..+..+..... .+...++++||+||||||||++|+++|.+++. +++.++
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~----~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~-------p~i~is 248 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTA----VGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV-------PFFSIS 248 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhh----ccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------Ceeecc
Confidence 4789999999999999998877665554433 44567889999999999999999999998765 899999
Q ss_pred cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCC---CCchhHHHHHHHHHhhccC----CCEEEEEec
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKA---DDKDYGIEALEEIMSVMDG----GKVVVIFAG 308 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~---~~~~~~~~~~~~ll~~~~~----~~v~vi~~~ 308 (438)
++++...++|.....++.+|+.|. ++||||||+|.+...++. ..+.....++++||..||+ ..++||++|
T Consensus 249 ~s~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaT 328 (638)
T CHL00176 249 GSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAAT 328 (638)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEec
Confidence 999998899998889999998874 589999999999877653 2345566889999999975 468888887
Q ss_pred CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhc
Q 013706 309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 386 (438)
Q Consensus 309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (438)
+.... + ||+++| ||+..|.|+.|+.++|.+|++.++.+.. +.+ +..+..++..+.
T Consensus 329 N~~~~--L---D~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~---------~~~---d~~l~~lA~~t~------ 385 (638)
T CHL00176 329 NRVDI--L---DAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK---------LSP---DVSLELIARRTP------ 385 (638)
T ss_pred CchHh--h---hhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc---------cch---hHHHHHHHhcCC------
Confidence 65443 2 888887 9999999999999999999999998632 222 234455555442
Q ss_pred cccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHH
Q 013706 387 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 433 (438)
Q Consensus 387 ~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~ 433 (438)
..++++|.+++++|...++.+ ....|+.+||++|++.+
T Consensus 386 G~sgaDL~~lvneAal~a~r~---------~~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 386 GFSGADLANLLNEAAILTARR---------KKATITMKEIDTAIDRV 423 (638)
T ss_pred CCCHHHHHHHHHHHHHHHHHh---------CCCCcCHHHHHHHHHHH
Confidence 458899999999987766432 33568999999999876
No 32
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=9.9e-29 Score=231.41 Aligned_cols=245 Identities=22% Similarity=0.282 Sum_probs=197.5
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|+++.|.+.+++.+.+. +.++..+++.+..+. .++.++||+||||||||+++++||.++.. .|+.++
T Consensus 150 v~~~di~gl~~~k~~l~e~---vi~p~lr~d~F~glr-~p~rglLLfGPpgtGKtmL~~aiAsE~~a-------tff~iS 218 (428)
T KOG0740|consen 150 VGWDDIAGLEDAKQSLKEA---VILPLLRPDLFLGLR-EPVRGLLLFGPPGTGKTMLAKAIATESGA-------TFFNIS 218 (428)
T ss_pred ccccCCcchhhHHHHhhhh---hhhcccchHhhhccc-cccchhheecCCCCchHHHHHHHHhhhcc-------eEeecc
Confidence 5689999999999999987 677777788877664 47889999999999999999999999987 999999
Q ss_pred cccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC------CCEEEEEecC
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKVVVIFAGY 309 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------~~v~vi~~~~ 309 (438)
++.+.++|+|++++.++.+|.-| +++|+||||+|+++..|...+++...+...++|-.+++ .+|+||+|||
T Consensus 219 assLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN 298 (428)
T KOG0740|consen 219 ASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATN 298 (428)
T ss_pred HHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCC
Confidence 99999999999999999999877 46999999999999999777788888888888888875 4688888876
Q ss_pred ChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhcccc
Q 013706 310 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN 389 (438)
Q Consensus 310 ~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 389 (438)
...-. |.+++|||..++.+|.|+.+.+..+++..+.+.. ..+. +.+.+.+..++++| +
T Consensus 299 ~P~e~-----Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~-------~~l~-~~d~~~l~~~Tegy---------s 356 (428)
T KOG0740|consen 299 RPWEL-----DEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQP-------NGLS-DLDISLLAKVTEGY---------S 356 (428)
T ss_pred CchHH-----HHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCC-------CCcc-HHHHHHHHHHhcCc---------c
Confidence 55543 8889999999999999999999999999998852 1221 12444555555544 4
Q ss_pred ccchHHHHHHHHHHhhccc----cCCCCChhhhhhccHHHHHHHHHHHHhc
Q 013706 390 GGLVDPMLVNARENLDLRL----SFDCLDTDELRTITLEDLEAGLKLLLRL 436 (438)
Q Consensus 390 ~~~l~~~~~~a~~~~~~r~----~~~~~~~~~~~~i~~~d~~~a~~~~~~~ 436 (438)
+.++.+++..|..--...+ .-.....+..+.++..||+++++.++|.
T Consensus 357 gsdi~~l~kea~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~ 407 (428)
T KOG0740|consen 357 GSDITALCKEAAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPS 407 (428)
T ss_pred cccHHHHHHHhhcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhccc
Confidence 6667777776654221111 1223456778899999999999999875
No 33
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-28 Score=216.49 Aligned_cols=233 Identities=23% Similarity=0.294 Sum_probs=185.9
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
-.|+++.|.......+++ .+..+...++++..++..+|++++||||||||||.+|+++|..++. .|+.+.
T Consensus 129 ~s~~~~ggl~~qirelre---~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~-------nfl~v~ 198 (388)
T KOG0651|consen 129 ISFENVGGLFYQIRELRE---VIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGV-------NFLKVV 198 (388)
T ss_pred cCHHHhCChHHHHHHHHh---heEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCC-------ceEEee
Confidence 368888888755555554 5788889999999999999999999999999999999999998876 899999
Q ss_pred cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCch---hHHHHHHHHHhhccC----CCEEEEEec
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKD---YGIEALEEIMSVMDG----GKVVVIFAG 308 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~---~~~~~~~~ll~~~~~----~~v~vi~~~ 308 (438)
.+.++++|+||+.+.+++.|..|+ +||||+||||.+..++.+.... ...+.+-.|+.+|++ ++|-+|+||
T Consensus 199 ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~Imat 278 (388)
T KOG0651|consen 199 SSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMAT 278 (388)
T ss_pred HhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEec
Confidence 999999999999999999999885 5999999999999877443333 344555566666766 789999998
Q ss_pred CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhc
Q 013706 309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 386 (438)
Q Consensus 309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (438)
+..+.. +|+|+| |+++.++.|.|+...+..|++.+-... .....++.+++.++..+
T Consensus 279 NrpdtL-----dpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i---------~~~Geid~eaivK~~d~-------- 336 (388)
T KOG0651|consen 279 NRPDTL-----DPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPI---------DFHGEIDDEAILKLVDG-------- 336 (388)
T ss_pred CCcccc-----chhhcCCccccceeccCCcchhhceeeEeeccccc---------cccccccHHHHHHHHhc--------
Confidence 776664 999998 999999999999999999888766543 44566788888888875
Q ss_pred cccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHH
Q 013706 387 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 433 (438)
Q Consensus 387 ~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~ 433 (438)
.||++++++...|-.-+ .+++...+..+||-.++.++
T Consensus 337 -f~gad~rn~~tEag~Fa---------~~~~~~~vl~Ed~~k~vrk~ 373 (388)
T KOG0651|consen 337 -FNGADLRNVCTEAGMFA---------IPEERDEVLHEDFMKLVRKQ 373 (388)
T ss_pred -cChHHHhhhcccccccc---------cchhhHHHhHHHHHHHHHHH
Confidence 45677777766655332 34455667788887776654
No 34
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.95 E-value=1.4e-27 Score=217.94 Aligned_cols=186 Identities=16% Similarity=0.217 Sum_probs=145.3
Q ss_pred CCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHcc--------CcE
Q 013706 194 VGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE--------GGI 265 (438)
Q Consensus 194 ~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~--------~~i 265 (438)
.+..+|.+++||||||||||++|+++|++++. +++.++++++.++|+|++++.++++|..|. +||
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~-------~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcV 215 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGI-------EPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSC 215 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCC-------CeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeE
Confidence 34568999999999999999999999999877 899999999999999999999999998773 699
Q ss_pred EEEeCcccccCCCCCCCchhHHHHH-HHHHhhccC----------------CCEEEEEecCChhHHHHhhhCcCccC--C
Q 013706 266 LFVDEAYRLIPMQKADDKDYGIEAL-EEIMSVMDG----------------GKVVVIFAGYSEPMKRVIASNEGFCR--R 326 (438)
Q Consensus 266 l~iDEid~l~~~~~~~~~~~~~~~~-~~ll~~~~~----------------~~v~vi~~~~~~~~~~~~~~~p~l~~--R 326 (438)
|||||||++++++.+++.....+++ .+|+..||+ ..|+||+|||..... +|+|+| |
T Consensus 216 LFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~L-----DpALlRpGR 290 (413)
T PLN00020 216 LFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTL-----YAPLIRDGR 290 (413)
T ss_pred EEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccC-----CHhHcCCCC
Confidence 9999999999988755555555554 789888753 347788886554443 999999 9
Q ss_pred CCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhc
Q 013706 327 VTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDL 406 (438)
Q Consensus 327 ~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~ 406 (438)
||..+ ..|+.++|.+|++.++++. .++...+..+...+-++.+... |+.--.+.+.+++....
T Consensus 291 fDk~i--~lPd~e~R~eIL~~~~r~~-------------~l~~~dv~~Lv~~f~gq~~Df~--GAlrar~yd~~v~~~i~ 353 (413)
T PLN00020 291 MEKFY--WAPTREDRIGVVHGIFRDD-------------GVSREDVVKLVDTFPGQPLDFF--GALRARVYDDEVRKWIA 353 (413)
T ss_pred CCcee--CCCCHHHHHHHHHHHhccC-------------CCCHHHHHHHHHcCCCCCchhh--hHHHHHHHHHHHHHHHH
Confidence 99865 5899999999999998863 3456788888887755444222 33334455666665544
Q ss_pred cc
Q 013706 407 RL 408 (438)
Q Consensus 407 r~ 408 (438)
++
T Consensus 354 ~~ 355 (413)
T PLN00020 354 EV 355 (413)
T ss_pred Hh
Confidence 43
No 35
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.95 E-value=8.5e-28 Score=230.78 Aligned_cols=233 Identities=23% Similarity=0.319 Sum_probs=182.2
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..+++++|++..++++++.+. .+..++..+...+..+|+++||+||||||||++|+++|+.+.. +++.+.
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~---~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~-------~~~~v~ 188 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVE---LPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA-------TFIRVV 188 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHH---HHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC-------CEEecc
Confidence 468899999999999998754 4445555555566678899999999999999999999998765 788888
Q ss_pred cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCC---chhHHHHHHHHHhhccC----CCEEEEEec
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFAG 308 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~~~~----~~v~vi~~~ 308 (438)
++++...++|+....++..|+.++ ++||||||+|.+..++.+.. .......+..++..+++ +.+.||++|
T Consensus 189 ~~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~tt 268 (364)
T TIGR01242 189 GSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAAT 268 (364)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEec
Confidence 888999999999999999998764 58999999999987765332 22344566777777763 578888887
Q ss_pred CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhc
Q 013706 309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 386 (438)
Q Consensus 309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (438)
+.... + +|++++ ||+..|+|+.|+.+++.+|++.++.+. .+..+++.+.++..+.+
T Consensus 269 n~~~~--l---d~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~---------~l~~~~~~~~la~~t~g-------- 326 (364)
T TIGR01242 269 NRPDI--L---DPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKM---------KLAEDVDLEAIAKMTEG-------- 326 (364)
T ss_pred CChhh--C---ChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcC---------CCCccCCHHHHHHHcCC--------
Confidence 65432 2 888887 999999999999999999999887653 33344566666666654
Q ss_pred cccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHH
Q 013706 387 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 433 (438)
Q Consensus 387 ~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~ 433 (438)
.+++++++++..|...+..+ +...|+.+||.+|++++
T Consensus 327 -~sg~dl~~l~~~A~~~a~~~---------~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 327 -ASGADLKAICTEAGMFAIRE---------ERDYVTMDDFIKAVEKV 363 (364)
T ss_pred -CCHHHHHHHHHHHHHHHHHh---------CCCccCHHHHHHHHHHh
Confidence 44788899998888877433 23579999999999886
No 36
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.1e-27 Score=238.08 Aligned_cols=250 Identities=23% Similarity=0.258 Sum_probs=203.3
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|++++|++.++.++++. +..+..+++.+......+|.++||+||||||||+.||++|..+.. ...+..|+.-.
T Consensus 262 v~fd~vggl~~~i~~LKEm---Vl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~--~~~kisffmrk 336 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEM---VLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSR--GNRKISFFMRK 336 (1080)
T ss_pred cCccccccHHHHHHHHHHH---HHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcc--cccccchhhhc
Confidence 4699999999999999987 778889999998888889999999999999999999999998742 23345677888
Q ss_pred cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC----CCEEEEEecCCh
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSE 311 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~v~vi~~~~~~ 311 (438)
+++..++|+|+.+..++-+|++|+ ++|+|+||||-++|.|.+-+......++..||.+|++ ++|+||+||++.
T Consensus 337 gaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnRp 416 (1080)
T KOG0732|consen 337 GADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNRP 416 (1080)
T ss_pred CchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCCc
Confidence 899999999999999999999996 4899999999999988755555556788999999987 889999998766
Q ss_pred hHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhcccc
Q 013706 312 PMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN 389 (438)
Q Consensus 312 ~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 389 (438)
+.. +|+|+| ||+..++||.|+.+++..|+..+..+.. +.+....+.++++... .+-
T Consensus 417 da~-----dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~-----------~~i~~~l~~~la~~t~------gy~ 474 (1080)
T KOG0732|consen 417 DAI-----DPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWE-----------PPISRELLLWLAEETS------GYG 474 (1080)
T ss_pred ccc-----chhhcCCcccceeEeeeCCchHHHHHHHHHhccCCC-----------CCCCHHHHHHHHHhcc------ccc
Confidence 553 999988 9999999999999999999998877653 3445555666666554 455
Q ss_pred ccchHHHHHHHHHHhhccccC------CC-CChhhhhhccHHHHHHHHHHHHh
Q 013706 390 GGLVDPMLVNARENLDLRLSF------DC-LDTDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 390 ~~~l~~~~~~a~~~~~~r~~~------~~-~~~~~~~~i~~~d~~~a~~~~~~ 435 (438)
|++++.++..|...+..|-.- +. ........|...||-.|+..+.|
T Consensus 475 gaDlkaLCTeAal~~~~r~~Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~p 527 (1080)
T KOG0732|consen 475 GADLKALCTEAALIALRRSFPQIYSSSDKLLIDVALIKVEVRDFVEAMSRITP 527 (1080)
T ss_pred hHHHHHHHHHHhhhhhccccCeeecccccccccchhhhhhhHhhhhhhhccCC
Confidence 788888888888877765321 11 11223345999999999988766
No 37
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.94 E-value=9.8e-27 Score=212.36 Aligned_cols=192 Identities=22% Similarity=0.310 Sum_probs=154.4
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..+++++|++.+...-.-+.+.+ ......+++||||||||||++|+.||...+. .|..++
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v-------------~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~-------~f~~~s 80 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAV-------------EAGHLHSMILWGPPGTGKTTLARLIAGTTNA-------AFEALS 80 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHH-------------hcCCCceeEEECCCCCCHHHHHHHHHHhhCC-------ceEEec
Confidence 46899999998764433222222 1346789999999999999999999998876 788877
Q ss_pred cccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCCh
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE 311 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~ 311 (438)
+... +-+.++.++++| +..||||||||+|...+| +.||..|+++.+++|+|||.|
T Consensus 81 Av~~-------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ-----------D~lLp~vE~G~iilIGATTEN 142 (436)
T COG2256 81 AVTS-------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ-----------DALLPHVENGTIILIGATTEN 142 (436)
T ss_pred cccc-------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh-----------hhhhhhhcCCeEEEEeccCCC
Confidence 6543 335677888777 248999999999999888 999999999999999999999
Q ss_pred hHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhcccccccccccc-ccccccHHHHHHHHHHHhhHhhhccccc
Q 013706 312 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFK-LHSSCSMDAIAALIEKETTEKQRREMNG 390 (438)
Q Consensus 312 ~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 390 (438)
|...+ +|+|++|. .+++|.+++.+++..++++-+..... |+. ....++++++..+.... .|++
T Consensus 143 PsF~l---n~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~r-----gl~~~~~~i~~~a~~~l~~~s-------~GD~ 206 (436)
T COG2256 143 PSFEL---NPALLSRA-RVFELKPLSSEDIKKLLKRALLDEER-----GLGGQIIVLDEEALDYLVRLS-------NGDA 206 (436)
T ss_pred CCeee---cHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhc-----CCCcccccCCHHHHHHHHHhc-------CchH
Confidence 99877 99999998 99999999999999999995555442 443 33456778888887765 6778
Q ss_pred cchHHHHHHHHHHh
Q 013706 391 GLVDPMLVNARENL 404 (438)
Q Consensus 391 ~~l~~~~~~a~~~~ 404 (438)
|.+.|.+|.+...+
T Consensus 207 R~aLN~LE~~~~~~ 220 (436)
T COG2256 207 RRALNLLELAALSA 220 (436)
T ss_pred HHHHHHHHHHHHhc
Confidence 88999999888876
No 38
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.7e-27 Score=192.12 Aligned_cols=132 Identities=35% Similarity=0.454 Sum_probs=121.0
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHC-CCCcccccCCCCcHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH-GAFIEAKANNGMTPLHL 80 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~ 80 (438)
|+|+|||||||..||.++|.+|++. .+..+|.+|..||||||+||..|+.++|+.|+.+ |+|+|..+..|.|+|||
T Consensus 36 qD~Rt~LHwa~S~g~~eiv~fLlsq---~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHy 112 (226)
T KOG4412|consen 36 QDGRTPLHWACSFGHVEIVYFLLSQ---PNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHY 112 (226)
T ss_pred ccCCceeeeeeecCchhHHHHHHhc---CCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehh
Confidence 7999999999999999999999973 7888999999999999999999999999999998 99999999999999999
Q ss_pred HhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706 81 SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 141 (438)
Q Consensus 81 A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~ 141 (438)
|+ .+|+.+++.+|++.|+.++.+|..|.||||.+|+ -+..+++++|...++..+..
T Consensus 113 Aa----gK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAa-vGklkvie~Li~~~a~~n~q 168 (226)
T KOG4412|consen 113 AA----GKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAA-VGKLKVIEYLISQGAPLNTQ 168 (226)
T ss_pred hh----cCChhhHHHHHHhcCCCCcccccccCchhHHHHh-ccchhhHHHHHhcCCCCCcc
Confidence 99 8999999999999999999999999999966666 56888999999877654433
No 39
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.2e-26 Score=223.45 Aligned_cols=209 Identities=23% Similarity=0.322 Sum_probs=171.0
Q ss_pred hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706 162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 241 (438)
Q Consensus 162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 241 (438)
+++.|......++++. +.++.+++..+...+..+|+++|+|||||||||++++++|++.+. .++.+++++
T Consensus 184 ~~~gg~~~~~~~i~e~---v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a-------~~~~i~~pe 253 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIREL---VELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGA-------FLFLINGPE 253 (693)
T ss_pred cccchhHHHHHHHHHH---HHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCc-------eeEecccHH
Confidence 4556666555555555 778889999998899999999999999999999999999999876 788999999
Q ss_pred ccccccccchHHHHHHHHHcc----CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC----CCEEEEEecCChhH
Q 013706 242 LVGEFVGHTGPKTRRRIKEAE----GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSEPM 313 (438)
Q Consensus 242 ~~~~~~g~~~~~~~~~~~~a~----~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~v~vi~~~~~~~~ 313 (438)
+++++.|+++++++++|++|. ++|+||||+|.++|++..... ...++..+|+.+|++ ++++|++++++...
T Consensus 254 li~k~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~-~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~s 332 (693)
T KOG0730|consen 254 LISKFPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD-VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDS 332 (693)
T ss_pred HHHhcccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch-HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccc
Confidence 999999999999999999883 689999999999998876554 677999999999986 56888888765554
Q ss_pred HHHhhhCcCccC-CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccc
Q 013706 314 KRVIASNEGFCR-RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGL 392 (438)
Q Consensus 314 ~~~~~~~p~l~~-R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 392 (438)
. ||+++| |||..+.+..|+..++.+|++.+.++.. +..+.+...++..+.+|.| ++
T Consensus 333 l-----d~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~---------~~~~~~l~~iA~~thGyvG---------aD 389 (693)
T KOG0730|consen 333 L-----DPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMN---------LLSDVDLEDIAVSTHGYVG---------AD 389 (693)
T ss_pred c-----ChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcC---------CcchhhHHHHHHHccchhH---------HH
Confidence 3 999997 9999999999999999999999988753 3344566666666666664 55
Q ss_pred hHHHHHHHHHHh
Q 013706 393 VDPMLVNARENL 404 (438)
Q Consensus 393 l~~~~~~a~~~~ 404 (438)
|-.++..|...+
T Consensus 390 L~~l~~ea~~~~ 401 (693)
T KOG0730|consen 390 LAALCREASLQA 401 (693)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 40
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.94 E-value=6.8e-26 Score=230.82 Aligned_cols=237 Identities=19% Similarity=0.291 Sum_probs=187.5
Q ss_pred HHHHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEE
Q 013706 156 ELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT 235 (438)
Q Consensus 156 ~~~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~ 235 (438)
.....|+++.|.+..++++.++......+..... .+...+++++|+||||||||++|+++++++.. +|+
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~----~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~-------~f~ 214 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQK----LGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV-------PFF 214 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHh----cCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC-------CEE
Confidence 4456799999999999999998776655444433 23346788999999999999999999998866 899
Q ss_pred EeecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCC---CchhHHHHHHHHHhhccC----CCEEEE
Q 013706 236 EVQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVI 305 (438)
Q Consensus 236 ~~~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~v~vi 305 (438)
.++++++...++|.....++..|+.+. ++||||||+|.+.++++.. .+.....++++||..||+ ..++||
T Consensus 215 ~is~~~~~~~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivI 294 (644)
T PRK10733 215 TISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVI 294 (644)
T ss_pred EEehHHhHHhhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEE
Confidence 999999999999999999999998874 5899999999999877632 344566789999999985 457888
Q ss_pred EecCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHh
Q 013706 306 FAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEK 383 (438)
Q Consensus 306 ~~~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (438)
++|+..... ||+++| ||++.|.|+.|+.++|.+|++.++.+. .+..+++...++..+.
T Consensus 295 aaTN~p~~l-----D~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~---------~l~~~~d~~~la~~t~------ 354 (644)
T PRK10733 295 AATNRPDVL-----DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV---------PLAPDIDAAIIARGTP------ 354 (644)
T ss_pred EecCChhhc-----CHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcC---------CCCCcCCHHHHHhhCC------
Confidence 887654433 899987 999999999999999999999999764 3344555444443333
Q ss_pred hhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706 384 QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 384 ~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 435 (438)
..+++++.+++..|...++.+ +...|+.+||++|++.+.+
T Consensus 355 ---G~sgadl~~l~~eAa~~a~r~---------~~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 355 ---GFSGADLANLVNEAALFAARG---------NKRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHc---------CCCcccHHHHHHHHHHHhc
Confidence 556889999999998876432 3357899999999887754
No 41
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=5.9e-26 Score=236.44 Aligned_cols=245 Identities=21% Similarity=0.320 Sum_probs=190.8
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|++++|.+.+++++++++. .+..+++.+...+..++.++|||||||||||++|+++|+++.. +++.++
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~---~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~-------~~i~i~ 244 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVE---LPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGA-------YFISIN 244 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCC-------eEEEEe
Confidence 578999999999999998854 4445566555666678899999999999999999999998865 789999
Q ss_pred cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC----CCEEEEEecCCh
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSE 311 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~v~vi~~~~~~ 311 (438)
++++.+++.|+++..++.+|+.+. ++||||||+|.+.++++....+...+++++|+..|++ +.++||++|+..
T Consensus 245 ~~~i~~~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~ 324 (733)
T TIGR01243 245 GPEIMSKYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRP 324 (733)
T ss_pred cHHHhcccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCCh
Confidence 999999999999999999998874 4899999999999988765566667889999999974 567888776544
Q ss_pred hHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhcccc
Q 013706 312 PMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN 389 (438)
Q Consensus 312 ~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 389 (438)
. .+ ||++++ ||+..+.++.|+.+++.+|++.+.... .+..+.+.+.+...+.++.
T Consensus 325 ~--~l---d~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~---------~l~~d~~l~~la~~t~G~~--------- 381 (733)
T TIGR01243 325 D--AL---DPALRRPGRFDREIVIRVPDKRARKEILKVHTRNM---------PLAEDVDLDKLAEVTHGFV--------- 381 (733)
T ss_pred h--hc---CHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCC---------CCccccCHHHHHHhCCCCC---------
Confidence 3 23 899887 999999999999999999999776543 3334445555555555444
Q ss_pred ccchHHHHHHHHHHhhccccC-CCC-------Ch--hhhhhccHHHHHHHHHHHHhc
Q 013706 390 GGLVDPMLVNARENLDLRLSF-DCL-------DT--DELRTITLEDLEAGLKLLLRL 436 (438)
Q Consensus 390 ~~~l~~~~~~a~~~~~~r~~~-~~~-------~~--~~~~~i~~~d~~~a~~~~~~~ 436 (438)
++++..++..|...+..|... ... .. .+...++.+||..|++.++|-
T Consensus 382 gadl~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps 438 (733)
T TIGR01243 382 GADLAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPS 438 (733)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhcccc
Confidence 567777888777777666432 111 10 122468999999999988875
No 42
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.2e-25 Score=181.53 Aligned_cols=133 Identities=32% Similarity=0.462 Sum_probs=122.3
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
..||||||+||..|+.++|+.|+.. .++++|..++.|+||||||+..|+.+++++|++.|+.++.+|..|.||||-|
T Consensus 70 daGWtPlhia~s~g~~evVk~Ll~r---~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRA 146 (226)
T KOG4412|consen 70 DAGWTPLHIAASNGNDEVVKELLNR---SGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRA 146 (226)
T ss_pred ccCCchhhhhhhcCcHHHHHHHhcC---CCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHH
Confidence 4799999999999999999999984 5999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHHH
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 142 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~~ 142 (438)
+ ..|+..++++|+..|+.+|..|++|+|||||+.+. ++.+...+|.+.+++....+
T Consensus 147 A----avGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e-~~~d~a~lLV~~gAd~~~ed 202 (226)
T KOG4412|consen 147 A----AVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAE-GHPDVAVLLVRAGADTDRED 202 (226)
T ss_pred H----hccchhhHHHHHhcCCCCCcccccCccHHHHHHhc-cCchHHHHHHHhccceeecc
Confidence 9 88999999999999999999999999999777554 47788888888887755544
No 43
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.92 E-value=5.9e-25 Score=188.42 Aligned_cols=185 Identities=24% Similarity=0.328 Sum_probs=125.6
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|++++||+.++..++-+++... .......|+|||||||+|||++|+.||++++. .+...+
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~-----------~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~-------~~~~~s 82 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAK-----------KRGEALDHMLFYGPPGLGKTTLARIIANELGV-------NFKITS 82 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHH-----------CTTS---EEEEESSTTSSHHHHHHHHHHHCT---------EEEEE
T ss_pred CCHHHccCcHHHHhhhHHHHHHHH-----------hcCCCcceEEEECCCccchhHHHHHHHhccCC-------CeEecc
Confidence 468999999999999887655442 11235679999999999999999999999987 676666
Q ss_pred cccccccccccchHHHHHHHHHc-cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCC----------------
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---------------- 301 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a-~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~---------------- 301 (438)
++.+. ....+..++... .+.||||||||++.+..| ..|+..|+++.
T Consensus 83 g~~i~------k~~dl~~il~~l~~~~ILFIDEIHRlnk~~q-----------e~LlpamEd~~idiiiG~g~~ar~~~~ 145 (233)
T PF05496_consen 83 GPAIE------KAGDLAAILTNLKEGDILFIDEIHRLNKAQQ-----------EILLPAMEDGKIDIIIGKGPNARSIRI 145 (233)
T ss_dssp CCC--------SCHHHHHHHHT--TT-EEEECTCCC--HHHH-----------HHHHHHHHCSEEEEEBSSSSS-BEEEE
T ss_pred chhhh------hHHHHHHHHHhcCCCcEEEEechhhccHHHH-----------HHHHHHhccCeEEEEeccccccceeec
Confidence 54321 122344444443 568999999999987555 89999998743
Q ss_pred ----EEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHH
Q 013706 302 ----VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 377 (438)
Q Consensus 302 ----v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (438)
+.+|+|||..... .++|++||....++..|+.+|+..|+++..... ..+++.++...++.
T Consensus 146 ~l~~FTligATTr~g~l-----s~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l-----------~i~i~~~~~~~Ia~ 209 (233)
T PF05496_consen 146 NLPPFTLIGATTRAGLL-----SSPLRDRFGIVLRLEFYSEEELAKIVKRSARIL-----------NIEIDEDAAEEIAR 209 (233)
T ss_dssp E----EEEEEESSGCCT-----SHCCCTTSSEEEE----THHHHHHHHHHCCHCT-----------T-EE-HHHHHHHHH
T ss_pred cCCCceEeeeecccccc-----chhHHhhcceecchhcCCHHHHHHHHHHHHHHh-----------CCCcCHHHHHHHHH
Confidence 5778888777654 789999999999999999999999999866643 35567788888877
Q ss_pred HHhhHhhhccccccchHHHHHHHH
Q 013706 378 KETTEKQRREMNGGLVDPMLVNAR 401 (438)
Q Consensus 378 ~~~~~~~~~~~n~~~l~~~~~~a~ 401 (438)
.. -|..|-..+++.++.
T Consensus 210 rs-------rGtPRiAnrll~rvr 226 (233)
T PF05496_consen 210 RS-------RGTPRIANRLLRRVR 226 (233)
T ss_dssp CT-------TTSHHHHHHHHHHHC
T ss_pred hc-------CCChHHHHHHHHHHH
Confidence 65 355676777776653
No 44
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.92 E-value=9.1e-25 Score=231.53 Aligned_cols=199 Identities=11% Similarity=0.124 Sum_probs=148.1
Q ss_pred CCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccc----------cc--------------
Q 013706 193 KVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF----------VG-------------- 248 (438)
Q Consensus 193 ~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~----------~g-------------- 248 (438)
.++..+|+|+||+||||||||.+||++|.+++. ||+.+++++++..+ +|
T Consensus 1624 rLGl~pPKGILLiGPPGTGKTlLAKALA~es~V-------PFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~ 1696 (2281)
T CHL00206 1624 RLALSPSRGILVIGSIGTGRSYLVKYLATNSYV-------PFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRD 1696 (2281)
T ss_pred HcCCCCCCceEEECCCCCCHHHHHHHHHHhcCC-------ceEEEEHHHHhhcccccccccccccccccccccccccccc
Confidence 355678999999999999999999999999887 99999999888654 22
Q ss_pred -----------------cchH--HHHHHHHHc---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-------
Q 013706 249 -----------------HTGP--KTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------- 299 (438)
Q Consensus 249 -----------------~~~~--~~~~~~~~a---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------- 299 (438)
..+. .++.+|+.| .+|||||||||.+..+.. . ...+++|+..|++
T Consensus 1697 ~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds---~---~ltL~qLLneLDg~~~~~s~ 1770 (2281)
T CHL00206 1697 LDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES---N---YLSLGLLVNSLSRDCERCST 1770 (2281)
T ss_pred cchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc---c---eehHHHHHHHhccccccCCC
Confidence 2222 367788877 469999999999987522 1 1247888888874
Q ss_pred CCEEEEEecCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhcccccccccccccccc-ccHHHHHHHH
Q 013706 300 GKVVVIFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSS-CSMDAIAALI 376 (438)
Q Consensus 300 ~~v~vi~~~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 376 (438)
..|+||+||+..... ||||+| |||+.|.++.|+..++.+++...+... ++.+... ++.+.++..+
T Consensus 1771 ~~VIVIAATNRPD~L-----DPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tk-------g~~L~~~~vdl~~LA~~T 1838 (2281)
T CHL00206 1771 RNILVIASTHIPQKV-----DPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTR-------GFHLEKKMFHTNGFGSIT 1838 (2281)
T ss_pred CCEEEEEeCCCcccC-----CHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhc-------CCCCCcccccHHHHHHhC
Confidence 358899998766553 999998 999999999999999998887544221 2333322 3445555554
Q ss_pred HHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706 377 EKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 434 (438)
Q Consensus 377 ~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~ 434 (438)
. +.+||+|.+++.+|...++.+ ....|+.+|+..|++...
T Consensus 1839 ~---------GfSGADLanLvNEAaliAirq---------~ks~Id~~~I~~Al~Rq~ 1878 (2281)
T CHL00206 1839 M---------GSNARDLVALTNEALSISITQ---------KKSIIDTNTIRSALHRQT 1878 (2281)
T ss_pred C---------CCCHHHHHHHHHHHHHHHHHc---------CCCccCHHHHHHHHHHHH
Confidence 4 455788899999888887443 235678888888888764
No 45
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.89 E-value=1.1e-22 Score=182.57 Aligned_cols=222 Identities=21% Similarity=0.271 Sum_probs=158.2
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..+++.+|++.+..+ ..++..+ +....-+.++|+||||||||++||.|++..... +-.|++++
T Consensus 135 ktL~dyvGQ~hlv~q-~gllrs~------------ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~----SyrfvelS 197 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQ-DGLLRSL------------IEQNRIPSMILWGPPGTGKTTLARLIASTSKKH----SYRFVELS 197 (554)
T ss_pred chHHHhcchhhhcCc-chHHHHH------------HHcCCCCceEEecCCCCchHHHHHHHHhhcCCC----ceEEEEEe
Confidence 467888888876555 2222212 112456789999999999999999999855432 23577777
Q ss_pred cccccccccccchHHHHHHHHHcc--------CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCC
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEAE--------GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 310 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a~--------~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~ 310 (438)
+.... -..++++|++++ ..||||||||++...+| +.||..+++|.|++|+||+.
T Consensus 198 At~a~-------t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQ-----------D~fLP~VE~G~I~lIGATTE 259 (554)
T KOG2028|consen 198 ATNAK-------TNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQ-----------DTFLPHVENGDITLIGATTE 259 (554)
T ss_pred ccccc-------hHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhh-----------hcccceeccCceEEEecccC
Confidence 65432 346788888874 38999999999999888 89999999999999999999
Q ss_pred hhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccc---cccHHHHHHHHHHHhhHhhhcc
Q 013706 311 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHS---SCSMDAIAALIEKETTEKQRRE 387 (438)
Q Consensus 311 ~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 387 (438)
|+...+ +.+|.+|+ .++.+.+++.++...||.+-+.-..+..+ .+..+.. .++.+.++.+.... .
T Consensus 260 NPSFql---n~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser-~~~~l~n~s~~ve~siidyla~ls-------d 327 (554)
T KOG2028|consen 260 NPSFQL---NAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSER-PTDPLPNSSMFVEDSIIDYLAYLS-------D 327 (554)
T ss_pred CCccch---hHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccc-cCCCCCCcchhhhHHHHHHHHHhc-------C
Confidence 998877 88899998 89999999999999999986664332111 1122222 34555555555433 5
Q ss_pred ccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHH
Q 013706 388 MNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 432 (438)
Q Consensus 388 ~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~ 432 (438)
|+.|...|.+|.+......|- .+.....++.+|++++++.
T Consensus 328 GDaR~aLN~Lems~~m~~tr~-----g~~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 328 GDARAALNALEMSLSMFCTRS-----GQSSRVLLSIDDVKEGLQR 367 (554)
T ss_pred chHHHHHHHHHHHHHHHHhhc-----CCcccceecHHHHHHHHhh
Confidence 667777888887754432221 1223457899999988763
No 46
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.9e-22 Score=177.33 Aligned_cols=199 Identities=17% Similarity=0.245 Sum_probs=148.8
Q ss_pred hhhhhhHHHHHHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCC-CCCCceEEecCCCCCHHHHHHHHHHHHH--
Q 013706 148 SETKAKMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGA-RRPPHMAFLGNPGTGKTMVARILGRLLY-- 224 (438)
Q Consensus 148 ~~~~~~~~~~~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~GppGtGKT~la~~la~~l~-- 224 (438)
..+.-...+...-|+.++--..+|+.+..+..... ...+....... .-.+-+|++||||||||++.+++|+.+.
T Consensus 128 n~w~LPa~eF~glWEsLiyds~lK~~ll~Ya~s~l---~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 128 NHWYLPAAEFDGLWESLIYDSNLKERLLSYAASAL---LFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred hheeccchhhhhhHHHHhhcccHHHHHHHHHHHHH---HHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 33444556677788898888889999988755333 22222222111 1234588999999999999999999883
Q ss_pred HcCCcCCCCEEEeecccccccccccchHHHHHHHHHc------cC--cEEEEeCcccccCCCC----CCCchhHHHHHHH
Q 013706 225 MVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA------EG--GILFVDEAYRLIPMQK----ADDKDYGIEALEE 292 (438)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a------~~--~il~iDEid~l~~~~~----~~~~~~~~~~~~~ 292 (438)
..+....+.++++++..++++|++|+++.+.++|.+- ++ -.++|||++++...|. ++++..+.+++|+
T Consensus 205 ~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNa 284 (423)
T KOG0744|consen 205 TNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNA 284 (423)
T ss_pred ecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHH
Confidence 2233345678999999999999999999999998764 34 3567899999987663 3355667899999
Q ss_pred HHhhccC---CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccc
Q 013706 293 IMSVMDG---GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQT 353 (438)
Q Consensus 293 ll~~~~~---~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~ 353 (438)
+|++||. ..-++|+|| .|-.+.+ |-|+.+|-|.+.++.+|+.+.+.+|++..+.+..
T Consensus 285 lLTQlDrlK~~~NvliL~T-SNl~~si---D~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~ 344 (423)
T KOG0744|consen 285 LLTQLDRLKRYPNVLILAT-SNLTDSI---DVAFVDRADIVFYVGPPTAEAIYEILKSCIEELI 344 (423)
T ss_pred HHHHHHHhccCCCEEEEec-cchHHHH---HHHhhhHhhheeecCCccHHHHHHHHHHHHHHHH
Confidence 9999996 333444443 4444555 8899999999999999999999999999998764
No 47
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.88 E-value=1.6e-21 Score=170.24 Aligned_cols=172 Identities=22% Similarity=0.275 Sum_probs=130.6
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706 158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 237 (438)
Q Consensus 158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 237 (438)
.+.|++.+|++.+|+++.=++...+. + ....-|+|||||||.|||++|..+|++++..-...++|.++-
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~---r--------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK 90 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKK---R--------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK 90 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHh---c--------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC
Confidence 35789999999999999987665431 1 346779999999999999999999999987333333443321
Q ss_pred ecccccccccccchHHHHHHHHHc-cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-----------------
Q 013706 238 QRTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----------------- 299 (438)
Q Consensus 238 ~~~~~~~~~~g~~~~~~~~~~~~a-~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----------------- 299 (438)
...+..++..- .+-||||||||++.+.. -..|...|++
T Consensus 91 -------------~gDlaaiLt~Le~~DVLFIDEIHrl~~~v-----------EE~LYpaMEDf~lDI~IG~gp~Arsv~ 146 (332)
T COG2255 91 -------------PGDLAAILTNLEEGDVLFIDEIHRLSPAV-----------EEVLYPAMEDFRLDIIIGKGPAARSIR 146 (332)
T ss_pred -------------hhhHHHHHhcCCcCCeEEEehhhhcChhH-----------HHHhhhhhhheeEEEEEccCCccceEe
Confidence 12233444443 56899999999999743 3677788875
Q ss_pred ---CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHH
Q 013706 300 ---GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALI 376 (438)
Q Consensus 300 ---~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (438)
..+.+|+|||...+. ..+|++||....++..|+.+|+.+|+.+..... ..++++++...++
T Consensus 147 ldLppFTLIGATTr~G~l-----t~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l-----------~i~i~~~~a~eIA 210 (332)
T COG2255 147 LDLPPFTLIGATTRAGML-----TNPLRDRFGIIQRLEFYTVEELEEIVKRSAKIL-----------GIEIDEEAALEIA 210 (332)
T ss_pred ccCCCeeEeeeccccccc-----cchhHHhcCCeeeeecCCHHHHHHHHHHHHHHh-----------CCCCChHHHHHHH
Confidence 246899998887765 677999999999999999999999999877543 3566778888888
Q ss_pred HHHh
Q 013706 377 EKET 380 (438)
Q Consensus 377 ~~~~ 380 (438)
++.-
T Consensus 211 ~rSR 214 (332)
T COG2255 211 RRSR 214 (332)
T ss_pred Hhcc
Confidence 7764
No 48
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.2e-21 Score=190.76 Aligned_cols=239 Identities=17% Similarity=0.257 Sum_probs=176.6
Q ss_pred HHHHHHHHh-hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC
Q 013706 154 MDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD 232 (438)
Q Consensus 154 ~~~~~~~l~-~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~ 232 (438)
+.....-++ +--|++.+|++|.+++..... . .....+-++|+||||+|||++++.||+.++.
T Consensus 314 l~~a~~iLd~dHYGLekVKeRIlEyLAV~~l---~-------~~~kGpILcLVGPPGVGKTSLgkSIA~al~R------- 376 (782)
T COG0466 314 LKKAEKILDKDHYGLEKVKERILEYLAVQKL---T-------KKLKGPILCLVGPPGVGKTSLGKSIAKALGR------- 376 (782)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHHH---h-------ccCCCcEEEEECCCCCCchhHHHHHHHHhCC-------
Confidence 333334444 457999999999998664321 1 1123456889999999999999999999987
Q ss_pred CEEEeecccccc---------cccccchHHHHHHHHHcc--CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--
Q 013706 233 RVTEVQRTDLVG---------EFVGHTGPKTRRRIKEAE--GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-- 299 (438)
Q Consensus 233 ~~~~~~~~~~~~---------~~~g~~~~~~~~~~~~a~--~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-- 299 (438)
.|+.++...+.. .|+|....++-+.+.+|. +.+++|||||++.++.++++. ++||+.+|-
T Consensus 377 kfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPa-------SALLEVLDPEQ 449 (782)
T COG0466 377 KFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPA-------SALLEVLDPEQ 449 (782)
T ss_pred CEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChH-------HHHHhhcCHhh
Confidence 888887654332 388888888888888874 689999999999998877665 556666652
Q ss_pred ---------------CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhcccccccccccc-c
Q 013706 300 ---------------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFK-L 363 (438)
Q Consensus 300 ---------------~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~-~ 363 (438)
.+|.||+|.|. ++.+ +.+|++|+ ++|+++.|+.+|..+|.++||-.... ..+|++ -
T Consensus 450 N~~F~DhYLev~yDLS~VmFiaTANs--l~tI---P~PLlDRM-EiI~lsgYt~~EKl~IAk~~LiPk~~--~~~gL~~~ 521 (782)
T COG0466 450 NNTFSDHYLEVPYDLSKVMFIATANS--LDTI---PAPLLDRM-EVIRLSGYTEDEKLEIAKRHLIPKQL--KEHGLKKG 521 (782)
T ss_pred cCchhhccccCccchhheEEEeecCc--cccC---ChHHhcce-eeeeecCCChHHHHHHHHHhcchHHH--HHcCCCcc
Confidence 46788887443 4433 88999999 99999999999999999999876543 334663 4
Q ss_pred cccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHH
Q 013706 364 HSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 431 (438)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~ 431 (438)
...++++++..++++|+. .-.+|.|+..+...+|+++..+..+.... ...++..++++.+.
T Consensus 522 el~i~d~ai~~iI~~YTR-----EAGVR~LeR~i~ki~RK~~~~i~~~~~k~--~~~i~~~~l~~yLG 582 (782)
T COG0466 522 ELTITDEAIKDIIRYYTR-----EAGVRNLEREIAKICRKAAKKILLKKEKS--IVKIDEKNLKKYLG 582 (782)
T ss_pred ceeecHHHHHHHHHHHhH-----hhhhhHHHHHHHHHHHHHHHHHHhcCccc--ceeeCHHHHHHHhC
Confidence 457899999999999983 34468888888888888877765422111 13677777777653
No 49
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.87 E-value=2.5e-22 Score=190.81 Aligned_cols=204 Identities=18% Similarity=0.244 Sum_probs=158.0
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706 158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 237 (438)
Q Consensus 158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 237 (438)
...|++|+|.+....++.+.++.. +..+..||+.|++||||.++|++|++ .+....+||+.+
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr~--------------A~tdstVLi~GESGTGKElfA~~IH~----~S~R~~~PFIai 302 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKRI--------------AKTDSTVLILGESGTGKELFARAIHN----LSPRANGPFIAI 302 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHhh--------------cCCCCcEEEecCCCccHHHHHHHHHh----cCcccCCCeEEE
Confidence 347899999999888888776544 56889999999999999999999999 555667899999
Q ss_pred ecccc-----cccccccchHH--------HHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC----
Q 013706 238 QRTDL-----VGEFVGHTGPK--------TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG---- 300 (438)
Q Consensus 238 ~~~~~-----~~~~~g~~~~~--------~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~---- 300 (438)
+|+.+ .+.+||+.... ....|+.|.+|+||||||..|.. ..+..||+.++++
T Consensus 303 NCaAiPe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl-----------~LQaKLLRVLQEkei~r 371 (560)
T COG3829 303 NCAAIPETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPL-----------PLQAKLLRVLQEKEIER 371 (560)
T ss_pred ecccCCHHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCH-----------HHHHHHHHHHhhceEEe
Confidence 99863 45577763222 34678999999999999998876 4558999999863
Q ss_pred ---------CEEEEEecCChhHHHHhhhCcCcc----CCC-CcceeCCCCC--HHHHHHHHHHHHhcccccccccccccc
Q 013706 301 ---------KVVVIFAGYSEPMKRVIASNEGFC----RRV-TKFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLH 364 (438)
Q Consensus 301 ---------~v~vi~~~~~~~~~~~~~~~p~l~----~R~-~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~~ 364 (438)
+|.+|+||+.+..+.+. .-.+| -|+ -.-|.+||+- ++++..+...++.+... .+...
T Consensus 372 vG~t~~~~vDVRIIAATN~nL~~~i~--~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~-----~~~~~ 444 (560)
T COG3829 372 VGGTKPIPVDVRIIAATNRNLEKMIA--EGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSR-----RYGRN 444 (560)
T ss_pred cCCCCceeeEEEEEeccCcCHHHHHh--cCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHH-----HcCCC
Confidence 57999999888876553 32333 366 2234455554 48888999999987553 34333
Q ss_pred -ccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706 365 -SSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 403 (438)
Q Consensus 365 -~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~ 403 (438)
..++++++..+.++.| |||.|+|+|++++++-.
T Consensus 445 v~~ls~~a~~~L~~y~W------PGNVRELeNviER~v~~ 478 (560)
T COG3829 445 VKGLSPDALALLLRYDW------PGNVRELENVIERAVNL 478 (560)
T ss_pred cccCCHHHHHHHHhCCC------CchHHHHHHHHHHHHhc
Confidence 3489999999999999 99999999999999863
No 50
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.87 E-value=8.5e-23 Score=194.66 Aligned_cols=207 Identities=21% Similarity=0.264 Sum_probs=161.3
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 239 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 239 (438)
....++|.+...+++.+.+..+ +....+||++|++||||.++||+|++ .+...++||+.++|
T Consensus 139 ~~~~liG~S~am~~l~~~i~kv--------------A~s~a~VLI~GESGtGKElvAr~IH~----~S~R~~~PFVavNc 200 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKV--------------APSDASVLITGESGTGKELVARAIHQ----ASPRAKGPFIAVNC 200 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCCcHHHHHHHHHh----hCcccCCCceeeec
Confidence 5678999999999999987766 46788999999999999999999999 55566789999999
Q ss_pred cccc-----ccccccchH-------HHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-------
Q 013706 240 TDLV-----GEFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------- 300 (438)
Q Consensus 240 ~~~~-----~~~~g~~~~-------~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------- 300 (438)
..+. +++||+... +-...|+.|.+|+||||||..|.. .++..||+.++++
T Consensus 201 aAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl-----------~~Q~kLLRvLqe~~~~rvG~ 269 (464)
T COG2204 201 AAIPENLLESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPL-----------ELQVKLLRVLQEREFERVGG 269 (464)
T ss_pred ccCCHHHHHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCCH-----------HHHHHHHHHHHcCeeEecCC
Confidence 8643 457886432 233578999999999999999886 4458999999863
Q ss_pred ------CEEEEEecCChhHHHHhhh--CcCccCCC-CcceeCCCCC--HHHHHHHHHHHHhccccccccccccccccccH
Q 013706 301 ------KVVVIFAGYSEPMKRVIAS--NEGFCRRV-TKFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSM 369 (438)
Q Consensus 301 ------~v~vi~~~~~~~~~~~~~~--~p~l~~R~-~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~ 369 (438)
+|.||++|+.+..+.+... .+.|..|+ -..|++|++- .|++..++.+++.+...+ +| .-...++.
T Consensus 270 ~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~---~~-~~~~~~s~ 345 (464)
T COG2204 270 NKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAE---LG-RPPKGFSP 345 (464)
T ss_pred CcccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHH---cC-CCCCCCCH
Confidence 4678888877766544211 13444466 3355566665 489999999999987642 22 23456899
Q ss_pred HHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhh
Q 013706 370 DAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD 405 (438)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~ 405 (438)
+++..+..+.| |||+|+|+|+++++.-...
T Consensus 346 ~a~~~L~~y~W------PGNVREL~N~ver~~il~~ 375 (464)
T COG2204 346 EALAALLAYDW------PGNVRELENVVERAVILSE 375 (464)
T ss_pred HHHHHHHhCCC------ChHHHHHHHHHHHHHhcCC
Confidence 99999999999 9999999999999987653
No 51
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.87 E-value=6.7e-22 Score=185.35 Aligned_cols=210 Identities=22% Similarity=0.246 Sum_probs=161.2
Q ss_pred HHHHHHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC
Q 013706 154 MDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR 233 (438)
Q Consensus 154 ~~~~~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~ 233 (438)
..+....+.+|||.+....++.+.++.+ +.+...||+.|++||||..+||+|++ .+.....|
T Consensus 215 ~~~~~~~~~~iIG~S~am~~ll~~i~~V--------------A~Sd~tVLi~GETGtGKElvAraIH~----~S~R~~kP 276 (550)
T COG3604 215 LSEVVLEVGGIIGRSPAMRQLLKEIEVV--------------AKSDSTVLIRGETGTGKELVARAIHQ----LSPRRDKP 276 (550)
T ss_pred ccchhcccccceecCHHHHHHHHHHHHH--------------hcCCCeEEEecCCCccHHHHHHHHHh----hCcccCCC
Confidence 3444557789999999999998887766 56788999999999999999999999 44556679
Q ss_pred EEEeecccc-----cccccccchHHH-------HHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-
Q 013706 234 VTEVQRTDL-----VGEFVGHTGPKT-------RRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG- 300 (438)
Q Consensus 234 ~~~~~~~~~-----~~~~~g~~~~~~-------~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~- 300 (438)
|+.+||+.+ .++.||+..... +..|+.|.+|+||+|||..|...-| .+||+.++++
T Consensus 277 fV~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQ-----------aKLLRvLQegE 345 (550)
T COG3604 277 FVKLNCAALPESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQ-----------AKLLRVLQEGE 345 (550)
T ss_pred ceeeeccccchHHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCCHHHH-----------HHHHHHHhhcc
Confidence 999999874 456888743332 3467888999999999999987555 8999999863
Q ss_pred ------------CEEEEEecCChhHHHHhhhCcC----ccCCCC-cceeCCCCC--HHHHHHHHHHHHhccccccccccc
Q 013706 301 ------------KVVVIFAGYSEPMKRVIASNEG----FCRRVT-KFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGF 361 (438)
Q Consensus 301 ------------~v~vi~~~~~~~~~~~~~~~p~----l~~R~~-~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~ 361 (438)
+|.||+|||.+-...+. +-. |..|+. .=+.+||+- .+++..+.+.|+.+...+ +|.
T Consensus 346 ieRvG~~r~ikVDVRiIAATNRDL~~~V~--~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~---~gr 420 (550)
T COG3604 346 IERVGGDRTIKVDVRVIAATNRDLEEMVR--DGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRR---LGR 420 (550)
T ss_pred eeecCCCceeEEEEEEEeccchhHHHHHH--cCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHh---cCC
Confidence 47899998877766553 322 333652 223445554 378888888888887642 232
Q ss_pred cccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 362 KLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
. ...++.++++.+.++.| |||+|+|+|+|++|+-.+
T Consensus 421 ~-~l~ls~~Al~~L~~y~w------PGNVRELen~veRavlla 456 (550)
T COG3604 421 A-ILSLSAEALELLSSYEW------PGNVRELENVVERAVLLA 456 (550)
T ss_pred c-ccccCHHHHHHHHcCCC------CCcHHHHHHHHHHHHHHh
Confidence 1 34578999999999999 999999999999999877
No 52
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.86 E-value=6.7e-21 Score=197.96 Aligned_cols=242 Identities=18% Similarity=0.240 Sum_probs=169.8
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCC---cCCCCEEE
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVTE 236 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~---~~~~~~~~ 236 (438)
.++.++|.+....++.+++. .....+++|+||||||||++|+.+|+.+....+ .....++.
T Consensus 180 ~l~~~igr~~ei~~~~~~L~----------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLC----------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred CCCcccCcHHHHHHHHHHHh----------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 56789999987776665422 235678999999999999999999998843222 23457888
Q ss_pred eeccccc--ccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCCh
Q 013706 237 VQRTDLV--GEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE 311 (438)
Q Consensus 237 ~~~~~~~--~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~ 311 (438)
++.+.+. .+|.|+.+..++++|+++. ++||||||+|.+.+.+...+.+ ..+.+.|...++++.+.+|++||..
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~--~~~~~~L~~~l~~g~i~~IgaTt~~ 321 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS--MDASNLLKPALSSGKLRCIGSTTYE 321 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc--HHHHHHHHHHHhCCCeEEEEecCHH
Confidence 8887776 4789999999999998763 5899999999998765422221 2345778888999999999999997
Q ss_pred hHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhcccccc
Q 013706 312 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG 391 (438)
Q Consensus 312 ~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 391 (438)
.+...+..||+|.|||. .|+++.|+.+++.+|++........ .....++++++..++.....+ +.+-.--.
T Consensus 322 e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~-------~~~v~i~~~al~~~~~ls~ry-i~~r~~P~ 392 (731)
T TIGR02639 322 EYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEE-------FHHVKYSDEALEAAVELSARY-INDRFLPD 392 (731)
T ss_pred HHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHh-------ccCcccCHHHHHHHHHhhhcc-cccccCCH
Confidence 77777777999999994 7999999999999999987765321 112356777777766543210 00000012
Q ss_pred chHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHH
Q 013706 392 LVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 433 (438)
Q Consensus 392 ~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~ 433 (438)
....+++.|......+-. ..+...|+.+|+.+++..+
T Consensus 393 kai~lld~a~a~~~~~~~-----~~~~~~v~~~~i~~~i~~~ 429 (731)
T TIGR02639 393 KAIDVIDEAGASFRLRPK-----AKKKANVSVKDIENVVAKM 429 (731)
T ss_pred HHHHHHHHhhhhhhcCcc-----cccccccCHHHHHHHHHHH
Confidence 224555655543321100 1123458888888887765
No 53
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.86 E-value=1.2e-20 Score=197.12 Aligned_cols=240 Identities=19% Similarity=0.266 Sum_probs=167.8
Q ss_pred HHHHHHHHh-hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC
Q 013706 154 MDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD 232 (438)
Q Consensus 154 ~~~~~~~l~-~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~ 232 (438)
+......++ ++.|++.+++.|.+++.... .+ +....++++|+||||||||++|+++|+.++.
T Consensus 311 ~~~~~~~l~~~~~G~~~~k~~i~~~~~~~~---~~-------~~~~~~~lll~GppG~GKT~lAk~iA~~l~~------- 373 (775)
T TIGR00763 311 LKRAKEILDEDHYGLKKVKERILEYLAVQK---LR-------GKMKGPILCLVGPPGVGKTSLGKSIAKALNR------- 373 (775)
T ss_pred HHHHHHHhhhhcCChHHHHHHHHHHHHHHH---hh-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcC-------
Confidence 344455555 48899999999998755321 11 1123457999999999999999999999876
Q ss_pred CEEEeecccc---------cccccccchHHHHHHHHHc--cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--
Q 013706 233 RVTEVQRTDL---------VGEFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-- 299 (438)
Q Consensus 233 ~~~~~~~~~~---------~~~~~g~~~~~~~~~~~~a--~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-- 299 (438)
+++.++.... ...|+|.....+.+.|..+ .+.||||||||++.+..+++. .+.|++.+|.
T Consensus 374 ~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~-------~~aLl~~ld~~~ 446 (775)
T TIGR00763 374 KFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDP-------ASALLEVLDPEQ 446 (775)
T ss_pred CeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCccCCCH-------HHHHHHhcCHHh
Confidence 6666654432 2357888777888888776 347999999999997655322 2556665542
Q ss_pred ---------------CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhcccccccccccc-c
Q 013706 300 ---------------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFK-L 363 (438)
Q Consensus 300 ---------------~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~-~ 363 (438)
+++++|+|+|. .+.+ +|+|++|| .+|+|++|+.+++.+|++.++..... ...++. .
T Consensus 447 ~~~f~d~~~~~~~d~s~v~~I~TtN~--~~~i---~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~--~~~~l~~~ 518 (775)
T TIGR00763 447 NNAFSDHYLDVPFDLSKVIFIATANS--IDTI---PRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKAL--EDHGLKPD 518 (775)
T ss_pred cCccccccCCceeccCCEEEEEecCC--chhC---CHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHH--HHcCCCcc
Confidence 45777777554 3334 89999999 68999999999999999998853321 112331 2
Q ss_pred cccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccC-CCCCh--hhhhhccHHHHHHHH
Q 013706 364 HSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSF-DCLDT--DELRTITLEDLEAGL 430 (438)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~-~~~~~--~~~~~i~~~d~~~a~ 430 (438)
...++++++..+++.++ +..++|.|+..++...++++.++.. +.... .....++.++++..+
T Consensus 519 ~~~~~~~~l~~i~~~~~-----~e~g~R~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~l 583 (775)
T TIGR00763 519 ELKITDEALLLLIKYYT-----REAGVRNLERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYL 583 (775)
T ss_pred eEEECHHHHHHHHHhcC-----hhcCChHHHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhc
Confidence 34678999999999765 3456799999999999888877653 22111 112478888877664
No 54
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.86 E-value=4.4e-21 Score=191.44 Aligned_cols=213 Identities=21% Similarity=0.272 Sum_probs=154.2
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcC--Cc-CCCCEE
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG--IL-PTDRVT 235 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~--~~-~~~~~~ 235 (438)
..|++++|++...+.++..+. ...+.++||+||||||||++|+++++.+.... .. ...+|+
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~----------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi 125 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALC----------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFV 125 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHh----------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEE
Confidence 468899999998887775311 23567999999999999999999998765322 12 246889
Q ss_pred Eeecccc-------ccccccc--------------ch--HHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHH
Q 013706 236 EVQRTDL-------VGEFVGH--------------TG--PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEE 292 (438)
Q Consensus 236 ~~~~~~~-------~~~~~g~--------------~~--~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ 292 (438)
+++++.. ....+|. +. ......+.++.++||||||++.|.+..| +.
T Consensus 126 ~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q-----------~~ 194 (531)
T TIGR02902 126 EIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQM-----------NK 194 (531)
T ss_pred EEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHH-----------HH
Confidence 8887631 1112221 11 1123467788999999999999998554 77
Q ss_pred HHhhccCC------------------------------CEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHH
Q 013706 293 IMSVMDGG------------------------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELA 342 (438)
Q Consensus 293 ll~~~~~~------------------------------~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~ 342 (438)
|+..|+++ ++.+|++|++++. .+ +|++++|+ ..|.|++++.+|+.
T Consensus 195 LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~-~L---~paLrsR~-~~I~f~pL~~eei~ 269 (531)
T TIGR02902 195 LLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPE-EI---PPALRSRC-VEIFFRPLLDEEIK 269 (531)
T ss_pred HHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcc-cC---ChHHhhhh-heeeCCCCCHHHHH
Confidence 77776542 3467777766554 33 89999998 78899999999999
Q ss_pred HHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhcc
Q 013706 343 KILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTIT 422 (438)
Q Consensus 343 ~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~ 422 (438)
+|+++.+++.. ..++++++..+..+.| |+|++.++++.|...+..+ +...|+
T Consensus 270 ~Il~~~a~k~~-----------i~is~~al~~I~~y~~--------n~Rel~nll~~Aa~~A~~~---------~~~~It 321 (531)
T TIGR02902 270 EIAKNAAEKIG-----------INLEKHALELIVKYAS--------NGREAVNIVQLAAGIALGE---------GRKRIL 321 (531)
T ss_pred HHHHHHHHHcC-----------CCcCHHHHHHHHHhhh--------hHHHHHHHHHHHHHHHhhC---------CCcEEc
Confidence 99999987642 3467788887666543 6899999999998766322 224689
Q ss_pred HHHHHHHHH
Q 013706 423 LEDLEAGLK 431 (438)
Q Consensus 423 ~~d~~~a~~ 431 (438)
.+|++.++.
T Consensus 322 ~~dI~~vl~ 330 (531)
T TIGR02902 322 AEDIEWVAE 330 (531)
T ss_pred HHHHHHHhC
Confidence 999998875
No 55
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.86 E-value=2.1e-20 Score=175.32 Aligned_cols=164 Identities=15% Similarity=0.226 Sum_probs=112.7
Q ss_pred cCcEEEEeCcccccCCCCCCC-chhHHHHHHHHHhhccC------------CCEEEEEecC---ChhHHHHhhhCcCccC
Q 013706 262 EGGILFVDEAYRLIPMQKADD-KDYGIEALEEIMSVMDG------------GKVVVIFAGY---SEPMKRVIASNEGFCR 325 (438)
Q Consensus 262 ~~~il~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~~~~------------~~v~vi~~~~---~~~~~~~~~~~p~l~~ 325 (438)
..||+||||||+++.+.++.. +-.+..+++.||..+++ .++.||+++. ..+.+ + -|.|.+
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~D-l---IPEl~G 324 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSD-L---IPELQG 324 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhh-c---cHHHhC
Confidence 569999999999998754333 33445689999999997 4678888873 22222 3 699999
Q ss_pred CCCcceeCCCCCHHHHHHHH----HHHHhccccccccccccccccccHHHHHHHHHHHhhH-hhhccccccchHHHHHHH
Q 013706 326 RVTKFFHFNDFNSEELAKIL----HIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE-KQRREMNGGLVDPMLVNA 400 (438)
Q Consensus 326 R~~~~i~~~~~~~~e~~~il----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~n~~~l~~~~~~a 400 (438)
||+.++.+.+++.+++..|| ...+++.......+| +...++++++..+++..... .......+|.|+.++++.
T Consensus 325 R~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~eg--v~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~ 402 (443)
T PRK05201 325 RFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEG--VTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKL 402 (443)
T ss_pred ccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcC--cEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHH
Confidence 99999999999999999999 334444332222223 44567899999999877531 111234479999999999
Q ss_pred HHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706 401 RENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 434 (438)
Q Consensus 401 ~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~ 434 (438)
......-.... ......|+.+-+.+.+..+.
T Consensus 403 L~d~~Fe~p~~---~~~~v~I~~~~V~~~l~~l~ 433 (443)
T PRK05201 403 LEDISFEAPDM---SGETVTIDAAYVDEKLGDLV 433 (443)
T ss_pred HHHHhccCCCC---CCCEEEECHHHHHHHHHHHH
Confidence 88764333211 12335678877777776553
No 56
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.8e-21 Score=186.37 Aligned_cols=211 Identities=20% Similarity=0.296 Sum_probs=163.9
Q ss_pred hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccc
Q 013706 163 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 242 (438)
Q Consensus 163 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 242 (438)
+--|++++|++|.+++..-... +....+-++|+||||+|||++||.||+.|+. .|+.++-..+
T Consensus 412 DHYgm~dVKeRILEfiAV~kLr----------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnR-------kFfRfSvGG~ 474 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLR----------GSVQGKILCFVGPPGVGKTSIAKSIARALNR-------KFFRFSVGGM 474 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhc----------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCC-------ceEEEecccc
Confidence 4579999999999986633211 1224566889999999999999999999987 7777766543
Q ss_pred c---------ccccccchHHHHHHHHHc--cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC------------
Q 013706 243 V---------GEFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------------ 299 (438)
Q Consensus 243 ~---------~~~~g~~~~~~~~~~~~a--~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------------ 299 (438)
. ..|+|....++-+.++.. .+.+++|||||++.+.-|+++. ++||+.+|-
T Consensus 475 tDvAeIkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPa-------sALLElLDPEQNanFlDHYLd 547 (906)
T KOG2004|consen 475 TDVAEIKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPA-------SALLELLDPEQNANFLDHYLD 547 (906)
T ss_pred ccHHhhcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChH-------HHHHHhcChhhccchhhhccc
Confidence 2 238888888888888875 5689999999999976666554 566666652
Q ss_pred -----CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccc-cccccccHHHHH
Q 013706 300 -----GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGF-KLHSSCSMDAIA 373 (438)
Q Consensus 300 -----~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~-~~~~~~~~~~~~ 373 (438)
.+|.|||+.| .++.+ .|+|++|+ ++|+++.|..+|...|.++||-.... ..+|+ .-..+++++++.
T Consensus 548 Vp~DLSkVLFicTAN--~idtI---P~pLlDRM-EvIelsGYv~eEKv~IA~~yLip~a~--~~~gl~~e~v~is~~al~ 619 (906)
T KOG2004|consen 548 VPVDLSKVLFICTAN--VIDTI---PPPLLDRM-EVIELSGYVAEEKVKIAERYLIPQAL--KDCGLKPEQVKISDDALL 619 (906)
T ss_pred cccchhheEEEEecc--ccccC---Chhhhhhh-heeeccCccHHHHHHHHHHhhhhHHH--HHcCCCHHhcCccHHHHH
Confidence 4688888844 44444 89999999 99999999999999999999987653 34566 345678999999
Q ss_pred HHHHHHhhHhhhccccccchHHHHHHHHHHhhccccC
Q 013706 374 ALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSF 410 (438)
Q Consensus 374 ~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~ 410 (438)
.++++|+. .-.+|.|+.-+++..|+++.++..
T Consensus 620 ~lI~~Ycr-----EaGVRnLqk~iekI~Rk~Al~vv~ 651 (906)
T KOG2004|consen 620 ALIERYCR-----EAGVRNLQKQIEKICRKVALKVVE 651 (906)
T ss_pred HHHHHHHH-----HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999973 334688888889999998888754
No 57
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.9e-21 Score=175.90 Aligned_cols=211 Identities=19% Similarity=0.221 Sum_probs=148.7
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 239 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 239 (438)
-|++++-...++..|+++.........+ ..+-.|||||||||||||++||-||...+... -.+.+
T Consensus 353 pl~~ViL~psLe~Rie~lA~aTaNTK~h--------~apfRNilfyGPPGTGKTm~ArelAr~SGlDY-------A~mTG 417 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIATANTKKH--------QAPFRNILFYGPPGTGKTMFARELARHSGLDY-------AIMTG 417 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHHhcccccc--------cchhhheeeeCCCCCCchHHHHHHHhhcCCce-------ehhcC
Confidence 4888999999999999986654433322 33667999999999999999999999776422 22222
Q ss_pred ccccccccc-cchHHHHHHHHHc----cCcEEEEeCcccccCCCCCC-CchhHHHHHHHHHhhcc--CCCEEEEEecCCh
Q 013706 240 TDLVGEFVG-HTGPKTRRRIKEA----EGGILFVDEAYRLIPMQKAD-DKDYGIEALEEIMSVMD--GGKVVVIFAGYSE 311 (438)
Q Consensus 240 ~~~~~~~~g-~~~~~~~~~~~~a----~~~il~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~~~--~~~v~vi~~~~~~ 311 (438)
.++.- +| +.-.++.++|+=+ +|-+|||||+|.++..|... -++..+.++|.||-.-- +.+++++++|+..
T Consensus 418 GDVAP--lG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrp 495 (630)
T KOG0742|consen 418 GDVAP--LGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRP 495 (630)
T ss_pred CCccc--cchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCc
Confidence 22211 12 2345777888765 35699999999999887754 36667788999887763 3778888887655
Q ss_pred hHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhcccccccc---------------ccccccccccHHHHHHHH
Q 013706 312 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLL---------------YGFKLHSSCSMDAIAALI 376 (438)
Q Consensus 312 ~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~ 376 (438)
.-. |.++-+|||.+++||.|..||+..++..|+++....... .++++........+.+.+
T Consensus 496 gdl-----DsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaA 570 (630)
T KOG0742|consen 496 GDL-----DSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAA 570 (630)
T ss_pred cch-----hHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHH
Confidence 443 778889999999999999999999999999876422221 123344434444555555
Q ss_pred HHHhhHhhhccccccchHHHHH
Q 013706 377 EKETTEKQRREMNGGLVDPMLV 398 (438)
Q Consensus 377 ~~~~~~~~~~~~n~~~l~~~~~ 398 (438)
.... +..||++-.++-
T Consensus 571 kkTe------GfSGREiakLva 586 (630)
T KOG0742|consen 571 KKTE------GFSGREIAKLVA 586 (630)
T ss_pred Hhcc------CCcHHHHHHHHH
Confidence 5444 667888877754
No 58
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.85 E-value=3.5e-20 Score=177.85 Aligned_cols=259 Identities=18% Similarity=0.260 Sum_probs=169.3
Q ss_pred hhHHHHHHHHhh-hcChHHHHHHHHHHHHHhhhHHHHHhcCCC---CCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706 152 AKMDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLK---VGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG 227 (438)
Q Consensus 152 ~~~~~~~~~l~~-i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~ 227 (438)
....+....+++ ++|++.+++.+...+. .+.++...... ....+..++||+||||||||++|+++|+.+..
T Consensus 60 ~~p~~i~~~L~~~ViGq~~ak~~l~~av~---~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~-- 134 (412)
T PRK05342 60 PTPKEIKAHLDQYVIGQERAKKVLSVAVY---NHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDV-- 134 (412)
T ss_pred CCHHHHHHHHhhHeeChHHHHHHHHHHHH---HHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC--
Confidence 355667777775 8999999998865432 12122111111 11225678999999999999999999998865
Q ss_pred CcCCCCEEEeeccccc-ccccccchHH-HHHH-------HHHccCcEEEEeCcccccCCCCCCC---chhHHHHHHHHHh
Q 013706 228 ILPTDRVTEVQRTDLV-GEFVGHTGPK-TRRR-------IKEAEGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMS 295 (438)
Q Consensus 228 ~~~~~~~~~~~~~~~~-~~~~g~~~~~-~~~~-------~~~a~~~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~ 295 (438)
+|+.++++.+. ..|+|+.... +... ++.+.++||||||||++.+++.+.+ +-.+..+++.||+
T Consensus 135 -----pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~ 209 (412)
T PRK05342 135 -----PFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLK 209 (412)
T ss_pred -----CceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHH
Confidence 88888887765 3588875433 3333 3456789999999999998743211 2233468889999
Q ss_pred hccCC-----------------------CEEEEEecCChhH----------------------------HHHh-------
Q 013706 296 VMDGG-----------------------KVVVIFAGYSEPM----------------------------KRVI------- 317 (438)
Q Consensus 296 ~~~~~-----------------------~v~vi~~~~~~~~----------------------------~~~~------- 317 (438)
.||+. ++.+|++++-... ..++
T Consensus 210 ~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~d 289 (412)
T PRK05342 210 ILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPED 289 (412)
T ss_pred HHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHH
Confidence 99742 1233322210000 0111
Q ss_pred --h--hCcCccCCCCcceeCCCCCHHHHHHHHHH----HHhccccccccccccccccccHHHHHHHHHHHhhHhhhcccc
Q 013706 318 --A--SNEGFCRRVTKFFHFNDFNSEELAKILHI----KMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN 389 (438)
Q Consensus 318 --~--~~p~l~~R~~~~i~~~~~~~~e~~~il~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 389 (438)
. ..|+|..|++.++.|.+++.+++.+|+.. .+++..+..... .+...++++++..+++..+ .....
T Consensus 290 L~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~--~i~L~~t~~al~~Ia~~~~----~~~~G 363 (412)
T PRK05342 290 LIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMD--GVELEFTDEALEAIAKKAI----ERKTG 363 (412)
T ss_pred HHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhC--CcEEEECHHHHHHHHHhCC----CCCCC
Confidence 0 15899999999999999999999999973 443332211112 3456678999999998643 12455
Q ss_pred ccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHH
Q 013706 390 GGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEA 428 (438)
Q Consensus 390 ~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~ 428 (438)
+|.|+.++++.++.....+.... ......|+.+++.+
T Consensus 364 AR~Lrriie~~l~~~~~~~p~~~--~~~~v~I~~~~v~~ 400 (412)
T PRK05342 364 ARGLRSILEEILLDVMFELPSRE--DVEKVVITKEVVEG 400 (412)
T ss_pred CchHHHHHHHHhHHHHHhccccC--CCceEEECHHHhcc
Confidence 79999999999998877665321 12235677777754
No 59
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.85 E-value=6.2e-20 Score=172.09 Aligned_cols=164 Identities=14% Similarity=0.218 Sum_probs=112.8
Q ss_pred cCcEEEEeCcccccCCCCCCCc-hhHHHHHHHHHhhccC------------CCEEEEEecC---ChhHHHHhhhCcCccC
Q 013706 262 EGGILFVDEAYRLIPMQKADDK-DYGIEALEEIMSVMDG------------GKVVVIFAGY---SEPMKRVIASNEGFCR 325 (438)
Q Consensus 262 ~~~il~iDEid~l~~~~~~~~~-~~~~~~~~~ll~~~~~------------~~v~vi~~~~---~~~~~~~~~~~p~l~~ 325 (438)
+.||+||||||+++.+..+... -.+..+++.||..+++ .++.+|+++. ..+.+ + -|.|..
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~D-l---IPEl~G 322 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSD-L---IPELQG 322 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhh-c---cHHHhC
Confidence 5599999999999986643333 3445689999999997 4678888873 22222 3 699999
Q ss_pred CCCcceeCCCCCHHHHHHHH----HHHHhccccccccccccccccccHHHHHHHHHHHhhH-hhhccccccchHHHHHHH
Q 013706 326 RVTKFFHFNDFNSEELAKIL----HIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE-KQRREMNGGLVDPMLVNA 400 (438)
Q Consensus 326 R~~~~i~~~~~~~~e~~~il----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~n~~~l~~~~~~a 400 (438)
||+.++.+.+++.+++..|| ...+++.......+ .+...++++++.++++..... .......+|.|+.++++.
T Consensus 323 R~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~e--gv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~ 400 (441)
T TIGR00390 323 RFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTE--GVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERL 400 (441)
T ss_pred ccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhc--CcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHH
Confidence 99999999999999999999 33333333221122 344567899999999876521 111234479999999999
Q ss_pred HHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706 401 RENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 434 (438)
Q Consensus 401 ~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~ 434 (438)
......-.... ......|+.+-+.+.+..+.
T Consensus 401 l~d~~fe~p~~---~~~~v~I~~~~V~~~l~~~~ 431 (441)
T TIGR00390 401 LEDISFEAPDL---SGQNITIDADYVSKKLGALV 431 (441)
T ss_pred HHHHHhcCCCC---CCCEEEECHHHHHhHHHHHH
Confidence 88764333221 12345688888877776654
No 60
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.85 E-value=1.5e-20 Score=183.27 Aligned_cols=184 Identities=25% Similarity=0.358 Sum_probs=141.2
Q ss_pred HHHhhhcChHHHHHH---HHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEE
Q 013706 159 NELSNIVGLHELKIQ---LRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT 235 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~ 235 (438)
..+++++|++.+... +.+++. ...+.+++|+||||||||++|+++++.+.. .++
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~----------------~~~~~~ilL~GppGtGKTtLA~~ia~~~~~-------~~~ 65 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIE----------------AGRLSSMILWGPPGTGKTTLARIIAGATDA-------PFE 65 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHH----------------cCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CEE
Confidence 468899999988665 655532 224568999999999999999999997754 677
Q ss_pred EeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEec
Q 013706 236 EVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAG 308 (438)
Q Consensus 236 ~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~ 308 (438)
.+++... ....++.+++.+ ++.||||||+|.+....+ +.|+..++++.+++|++|
T Consensus 66 ~l~a~~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q-----------~~LL~~le~~~iilI~at 127 (413)
T PRK13342 66 ALSAVTS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQ-----------DALLPHVEDGTITLIGAT 127 (413)
T ss_pred EEecccc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHH-----------HHHHHHhhcCcEEEEEeC
Confidence 7776532 123444555544 558999999999976443 789999999999999998
Q ss_pred CChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccc
Q 013706 309 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM 388 (438)
Q Consensus 309 ~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (438)
+.++...+ ++++++|+ ..+.|++++.+++..++++.+..... ++ ..++++++..+.... .|
T Consensus 128 t~n~~~~l---~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~-----~~---i~i~~~al~~l~~~s-------~G 188 (413)
T PRK13342 128 TENPSFEV---NPALLSRA-QVFELKPLSEEDIEQLLKRALEDKER-----GL---VELDDEALDALARLA-------NG 188 (413)
T ss_pred CCChhhhc---cHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhc-----CC---CCCCHHHHHHHHHhC-------CC
Confidence 87776655 89999999 89999999999999999998876321 11 246778887777654 68
Q ss_pred cccchHHHHHHHHH
Q 013706 389 NGGLVDPMLVNARE 402 (438)
Q Consensus 389 n~~~l~~~~~~a~~ 402 (438)
+.|.+.++++.+..
T Consensus 189 d~R~aln~Le~~~~ 202 (413)
T PRK13342 189 DARRALNLLELAAL 202 (413)
T ss_pred CHHHHHHHHHHHHH
Confidence 88999999988754
No 61
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.84 E-value=6.9e-21 Score=178.52 Aligned_cols=208 Identities=22% Similarity=0.299 Sum_probs=163.0
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706 158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 237 (438)
Q Consensus 158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 237 (438)
...+++++|.+..-+++.+.++.. +....+||++|++||||+.+|+.|+..... . ...||+.+
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~--------------ap~~~~vLi~GetGtGKel~A~~iH~~s~r--~-~~~PFI~~ 136 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAY--------------APSGLPVLIIGETGTGKELFARLIHALSAR--R-AEAPFIAF 136 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhh--------------CCCCCcEEEecCCCccHHHHHHHHHHhhhc--c-cCCCEEEE
Confidence 356788999998777777765543 457789999999999999999999943332 1 67899999
Q ss_pred eccccc-----ccccccc-------hHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-----
Q 013706 238 QRTDLV-----GEFVGHT-------GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG----- 300 (438)
Q Consensus 238 ~~~~~~-----~~~~g~~-------~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~----- 300 (438)
||+.+. .+.||+. ...-..+|+.|.+|+||+|||+.|.+..| ..|++.+|++
T Consensus 137 NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q-----------~kLl~~le~g~~~rv 205 (403)
T COG1221 137 NCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQ-----------EKLLRVLEEGEYRRV 205 (403)
T ss_pred EHHHhCcCHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCHhHH-----------HHHHHHHHcCceEec
Confidence 998743 2355542 23344689999999999999999998665 8999999863
Q ss_pred --------CEEEEEecCChhHHHHhhhCcCccC-CCCcceeCCCCCH--HHHHHHHHHHHhccccccccccccccccccH
Q 013706 301 --------KVVVIFAGYSEPMKRVIASNEGFCR-RVTKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSM 369 (438)
Q Consensus 301 --------~v~vi~~~~~~~~~~~~~~~p~l~~-R~~~~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~ 369 (438)
+|.+|+||+.+.-..++.. ..|.+ |+...|++|++.. +|+..++..+++....+ .+..+... ++
T Consensus 206 G~~~~~~~dVRli~AT~~~l~~~~~~g-~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~---l~~~~~~~-~~ 280 (403)
T COG1221 206 GGSQPRPVDVRLICATTEDLEEAVLAG-ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARR---LGLPLSVD-SP 280 (403)
T ss_pred CCCCCcCCCceeeeccccCHHHHHHhh-cchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHH---cCCCCCCC-CH
Confidence 5789999988887777654 45666 7799999999985 78888999999887642 23333332 36
Q ss_pred HHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 370 DAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
+++..+..+.| +||+|+|+|+|++++-.+
T Consensus 281 ~a~~~L~~y~~------pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 281 EALRALLAYDW------PGNIRELKNLVERAVAQA 309 (403)
T ss_pred HHHHHHHhCCC------CCcHHHHHHHHHHHHHHh
Confidence 89999999999 999999999999998776
No 62
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.84 E-value=2.7e-21 Score=185.27 Aligned_cols=131 Identities=33% Similarity=0.389 Sum_probs=109.5
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccc-CCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN-MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHL 80 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 80 (438)
.+|.|+|||||.++.++++++|++ +|+++|+.+ .-+.||||||+++|+..++.+|+++|||++.+|.+|.+|||.
T Consensus 76 ~~g~tlLHWAAiNNrl~v~r~li~----~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHl 151 (600)
T KOG0509|consen 76 REGVTLLHWAAINNRLDVARYLIS----HGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHL 151 (600)
T ss_pred cCCccceeHHHHcCcHHHHHHHHH----cCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHH
Confidence 478899999999999999999998 788899888 558899999999999999999999999999999999999999
Q ss_pred HhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706 81 SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 141 (438)
Q Consensus 81 A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~ 141 (438)
|+ ..++..++-+|+.++++++++|.+|+|||+++|.++.... +.+|++.++.....
T Consensus 152 a~----~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~-v~~LL~f~a~~~~~ 207 (600)
T KOG0509|consen 152 AA----QFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALF-VRRLLKFGASLLLT 207 (600)
T ss_pred HH----HhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHH-HHHHHHhccccccc
Confidence 99 7788889999998899999999999999966666554444 66666655544433
No 63
>PHA02791 ankyrin-like protein; Provisional
Probab=99.84 E-value=9.8e-21 Score=173.68 Aligned_cols=126 Identities=22% Similarity=0.193 Sum_probs=81.3
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCC-cHHHHH
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGM-TPLHLS 81 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A 81 (438)
+|+||||+|+..|+.++|++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|++++.++..|+ ||||+|
T Consensus 60 d~~TpLh~Aa~~g~~eiV~lLL~----~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~A 135 (284)
T PHA02791 60 ENEFPLHQAATLEDTKIVKILLF----SGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHA 135 (284)
T ss_pred CCCCHHHHHHHCCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHH
Confidence 46677777777777777777776 5677777777777777777777777777777777777776666664 666666
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccC-CCCCccccccccCCCchhHHHHHHhccchHH
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKD-NEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 139 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d-~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~ 139 (438)
+ ..|+.+++++|+.++.+. .| ..|.||| |.|+..++.+++++|+.++++..
T Consensus 136 a----~~g~~eivk~LL~~~~~~--~d~~~g~TpL-h~Aa~~g~~eiv~lLL~~gAd~n 187 (284)
T PHA02791 136 V----MLNDVSIVSYFLSEIPST--FDLAILLSCI-HITIKNGHVDMMILLLDYMTSTN 187 (284)
T ss_pred H----HcCCHHHHHHHHhcCCcc--cccccCccHH-HHHHHcCCHHHHHHHHHCCCCCC
Confidence 6 555566666666554322 12 2356666 44444556666666666655433
No 64
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.84 E-value=3.2e-20 Score=189.47 Aligned_cols=191 Identities=21% Similarity=0.332 Sum_probs=140.1
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|++++|++.+......+.+.+. ....++++||||||||||++|+++|+.+.. .++.++
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~-------------~~~~~slLL~GPpGtGKTTLA~aIA~~~~~-------~f~~ln 84 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIK-------------ADRVGSLILYGPPGVGKTTLARIIANHTRA-------HFSSLN 84 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHh-------------cCCCceEEEECCCCCCHHHHHHHHHHHhcC-------cceeeh
Confidence 468899999988754332222121 234578999999999999999999997654 566666
Q ss_pred cccccccccccchHHHHHHHHH--------ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCC
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKE--------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 310 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~--------a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~ 310 (438)
+.... .+.++..++. ....+|||||+|.+....| +.|+..++++.+++|++|+.
T Consensus 85 a~~~~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQ-----------daLL~~lE~g~IiLI~aTTe 146 (725)
T PRK13341 85 AVLAG-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQ-----------DALLPWVENGTITLIGATTE 146 (725)
T ss_pred hhhhh-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHH-----------HHHHHHhcCceEEEEEecCC
Confidence 54211 1122222222 1347999999999976444 78899999999999999988
Q ss_pred hhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccc-cccccccHHHHHHHHHHHhhHhhhcccc
Q 013706 311 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGF-KLHSSCSMDAIAALIEKETTEKQRREMN 389 (438)
Q Consensus 311 ~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~n 389 (438)
++...+ ++++++|+ ..+.|++++.+++..++++.+.+... ++ .....++++++..++... +||
T Consensus 147 np~~~l---~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~-----~~g~~~v~I~deaL~~La~~s-------~GD 210 (725)
T PRK13341 147 NPYFEV---NKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKER-----GYGDRKVDLEPEAEKHLVDVA-------NGD 210 (725)
T ss_pred ChHhhh---hhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHh-----hcCCcccCCCHHHHHHHHHhC-------CCC
Confidence 887666 78999996 78999999999999999999874321 11 123457888988888764 799
Q ss_pred ccchHHHHHHHHHH
Q 013706 390 GGLVDPMLVNAREN 403 (438)
Q Consensus 390 ~~~l~~~~~~a~~~ 403 (438)
.|.+.++++.+...
T Consensus 211 ~R~lln~Le~a~~~ 224 (725)
T PRK13341 211 ARSLLNALELAVES 224 (725)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988753
No 65
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.84 E-value=8.2e-20 Score=172.06 Aligned_cols=187 Identities=20% Similarity=0.278 Sum_probs=129.3
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 239 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 239 (438)
.|++++|++.+++++..++.... .....+.+++|+||||||||++|+++|+++.. .+.....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~-----------~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~-------~~~~~~~ 63 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAK-----------MRQEALDHLLLYGPPGLGKTTLAHIIANEMGV-------NLKITSG 63 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHH-----------hcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-------CEEEecc
Confidence 58899999999999988754321 11235678999999999999999999998764 3333332
Q ss_pred ccccccccccchHHHHHHHHH-ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC------------------
Q 013706 240 TDLVGEFVGHTGPKTRRRIKE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------------------ 300 (438)
Q Consensus 240 ~~~~~~~~g~~~~~~~~~~~~-a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------------------ 300 (438)
+... ....+...+.. ..+.+|||||+|.+.+..+ ..|+..|++.
T Consensus 64 ~~~~------~~~~l~~~l~~~~~~~vl~iDEi~~l~~~~~-----------e~l~~~~~~~~~~~v~~~~~~~~~~~~~ 126 (305)
T TIGR00635 64 PALE------KPGDLAAILTNLEEGDVLFIDEIHRLSPAVE-----------ELLYPAMEDFRLDIVIGKGPSARSVRLD 126 (305)
T ss_pred chhc------CchhHHHHHHhcccCCEEEEehHhhhCHHHH-----------HHhhHHHhhhheeeeeccCccccceeec
Confidence 2111 11122233333 3468999999999976332 3444444331
Q ss_pred --CEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHH
Q 013706 301 --KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK 378 (438)
Q Consensus 301 --~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (438)
.+++|++|+.... + ++++++||...+.|++|+.+++.++++....... ..++++++..+++.
T Consensus 127 ~~~~~li~~t~~~~~--l---~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~-----------~~~~~~al~~ia~~ 190 (305)
T TIGR00635 127 LPPFTLVGATTRAGM--L---TSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLN-----------VEIEPEAALEIARR 190 (305)
T ss_pred CCCeEEEEecCCccc--c---CHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhC-----------CCcCHHHHHHHHHH
Confidence 2566666655432 2 7789999988999999999999999998877532 34677888888876
Q ss_pred HhhHhhhccccccchHHHHHHHHHHh
Q 013706 379 ETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 379 ~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
. .|+.|.+.++++.+...+
T Consensus 191 ~-------~G~pR~~~~ll~~~~~~a 209 (305)
T TIGR00635 191 S-------RGTPRIANRLLRRVRDFA 209 (305)
T ss_pred h-------CCCcchHHHHHHHHHHHH
Confidence 5 567788888888765443
No 66
>PHA02741 hypothetical protein; Provisional
Probab=99.84 E-value=1.8e-20 Score=160.39 Aligned_cols=130 Identities=21% Similarity=0.219 Sum_probs=114.1
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCC--CCCCcccccccCCCChHHHHHHHcCC----HHHHHHHHHCCCCcccccC-CC
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWP--GNDKVELEAQNMYGETPLHMAAKNGC----NEAAKLLLAHGAFIEAKAN-NG 74 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~--~~~~~~~~~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~-~g 74 (438)
..|.||||+||..|+.++++.|+... ...+++++.+|..|+||||+|+..|+ .+++++|+++|+++|.++. .|
T Consensus 19 ~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g 98 (169)
T PHA02741 19 SEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEG 98 (169)
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCC
Confidence 47899999999999999999986421 12468899999999999999999998 5889999999999999985 89
Q ss_pred CcHHHHHhhcccccCcHHHHHHHHh-CCCCCcccCCCCCccccccccCCCchhHHHHHHhccc
Q 013706 75 MTPLHLSVWYSIRSEDYATVKTLLE-YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSE 136 (438)
Q Consensus 75 ~t~L~~A~~~~~~~~~~~~~~~Ll~-~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~ 136 (438)
+||||+|+ ..++.+++++|+. .|++++..|.+|+||| +.|...+..+++++|...++
T Consensus 99 ~TpLh~A~----~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL-~~A~~~~~~~iv~~L~~~~~ 156 (169)
T PHA02741 99 DTALHLAA----HRRDHDLAEWLCCQPGIDLHFCNADNKSPF-ELAIDNEDVAMMQILREIVA 156 (169)
T ss_pred CCHHHHHH----HcCCHHHHHHHHhCCCCCCCcCCCCCCCHH-HHHHHCCCHHHHHHHHHHHH
Confidence 99999999 8899999999997 5999999999999999 66666778889999886553
No 67
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.83 E-value=9.1e-20 Score=172.85 Aligned_cols=208 Identities=19% Similarity=0.269 Sum_probs=141.5
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|++++|++..++.+..++..... ...++.+++|+||||||||++|+++|++++. .+...+
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~-----------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~-------~~~~~~ 83 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKK-----------RGEALDHVLLYGPPGLGKTTLANIIANEMGV-------NIRITS 83 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHh-----------cCCCCCcEEEECCCCccHHHHHHHHHHHhCC-------CeEEEe
Confidence 4789999999999999877543311 1235679999999999999999999998864 343333
Q ss_pred cccccccccccchHHHHHHHHHc-cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC------------------
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------------------ 299 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a-~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------------------ 299 (438)
.+.+. ....+...+... .++||||||||.+....+ ..|...|++
T Consensus 84 ~~~~~------~~~~l~~~l~~l~~~~vl~IDEi~~l~~~~~-----------e~l~~~~e~~~~~~~l~~~~~~~~~~~ 146 (328)
T PRK00080 84 GPALE------KPGDLAAILTNLEEGDVLFIDEIHRLSPVVE-----------EILYPAMEDFRLDIMIGKGPAARSIRL 146 (328)
T ss_pred ccccc------ChHHHHHHHHhcccCCEEEEecHhhcchHHH-----------HHHHHHHHhcceeeeeccCccccceee
Confidence 33211 122334444443 568999999999975332 223333332
Q ss_pred --CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHH
Q 013706 300 --GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 377 (438)
Q Consensus 300 --~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (438)
..+++|++|+.... + .++|++||...+.|++|+.+++.+|+++...... ..++++++..++.
T Consensus 147 ~l~~~~li~at~~~~~--l---~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~-----------~~~~~~~~~~ia~ 210 (328)
T PRK00080 147 DLPPFTLIGATTRAGL--L---TSPLRDRFGIVQRLEFYTVEELEKIVKRSARILG-----------VEIDEEGALEIAR 210 (328)
T ss_pred cCCCceEEeecCCccc--C---CHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC-----------CCcCHHHHHHHHH
Confidence 12567777665432 2 7789999999999999999999999998887642 4467788888887
Q ss_pred HHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHH
Q 013706 378 KETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 433 (438)
Q Consensus 378 ~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~ 433 (438)
.+ .|+.|.+.++++++...+..+ ....|+.+++.++++.+
T Consensus 211 ~~-------~G~pR~a~~~l~~~~~~a~~~---------~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 211 RS-------RGTPRIANRLLRRVRDFAQVK---------GDGVITKEIADKALDML 250 (328)
T ss_pred Hc-------CCCchHHHHHHHHHHHHHHHc---------CCCCCCHHHHHHHHHHh
Confidence 66 567788888888766544211 11345555655555543
No 68
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.83 E-value=2.3e-20 Score=165.11 Aligned_cols=132 Identities=18% Similarity=0.196 Sum_probs=88.7
Q ss_pred CCCcHHHHHHHcC--CHHHHHHHhcCCCCCCccccccc-CCCChHHHHHHHc---CCHHHHHHHHHCCCCcccccCCCCc
Q 013706 3 MAQTPLHVSAGYN--KAEIVKSLLEWPGNDKVELEAQN-MYGETPLHMAAKN---GCNEAAKLLLAHGAFIEAKANNGMT 76 (438)
Q Consensus 3 ~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~d-~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~t 76 (438)
.|.||||+|+..+ +.+++++|++ .|+++|.++ ..|+||||+|+.. ++.+++++|+++|+++|.+|..|.|
T Consensus 50 ~g~TpLh~a~~~~~~~~eiv~~Ll~----~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~T 125 (209)
T PHA02859 50 LYETPIFSCLEKDKVNVEILKFLIE----NGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKN 125 (209)
T ss_pred cCCCHHHHHHHcCCCCHHHHHHHHH----CCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCC
Confidence 5677777777643 6777777777 567777765 3677777776653 3577777777777777777777777
Q ss_pred HHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706 77 PLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK 140 (438)
Q Consensus 77 ~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~ 140 (438)
|||+|+.. ..++.+++++|++.|++++.+|.+|.||+|.++...++.+++++|+..|++...
T Consensus 126 pLh~a~~~--~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~ 187 (209)
T PHA02859 126 LLHMYMCN--FNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINE 187 (209)
T ss_pred HHHHHHHh--ccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCC
Confidence 77776521 235677777777777777777777777774444445566777777766655443
No 69
>PHA02791 ankyrin-like protein; Provisional
Probab=99.83 E-value=3.4e-20 Score=170.13 Aligned_cols=123 Identities=22% Similarity=0.159 Sum_probs=112.1
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
..|+||||+|+..|+.+++++|++ .|++++..+ |+||||+|+..|+.+++++|++.|++++.+|..|+||||+|
T Consensus 28 ~~G~TpLh~Aa~~g~~eiv~~Ll~----~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~A 101 (284)
T PHA02791 28 VHGHSALYYAIADNNVRLVCTLLN----AGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYA 101 (284)
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHH----CcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 469999999999999999999999 677777764 68999999999999999999999999999999999999999
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCC-ccccccccCCCchhHHHHHHhcc
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGK-TPLDHLSNGPGSAKLRELLLWHS 135 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~-t~l~~~a~~~~~~~~~~lL~~~~ 135 (438)
+ ..|+.+++++|+.+|++++..+..|+ ||| |.|+..++.+++++|+..+
T Consensus 102 a----~~g~~eivk~Ll~~gadin~~~~~g~~TpL-~~Aa~~g~~eivk~LL~~~ 151 (284)
T PHA02791 102 V----DSGNMQTVKLFVKKNWRLMFYGKTGWKTSF-YHAVMLNDVSIVSYFLSEI 151 (284)
T ss_pred H----HcCCHHHHHHHHHCCCCcCccCCCCCcHHH-HHHHHcCCHHHHHHHHhcC
Confidence 9 88999999999999999999999986 899 6666678889999998764
No 70
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.83 E-value=2.2e-19 Score=184.11 Aligned_cols=237 Identities=17% Similarity=0.230 Sum_probs=163.4
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcC---CcCCCCEEE
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVTE 236 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~---~~~~~~~~~ 236 (438)
+++.++|.+....++.+++. .....++||+||||||||++|+.+|..+.... ......++.
T Consensus 184 ~~~~liGR~~ei~~~i~iL~----------------r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~ 247 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLC----------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS 247 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHh----------------ccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEe
Confidence 46788999987777776533 22467899999999999999999998763322 223345566
Q ss_pred eeccccc--ccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCCh
Q 013706 237 VQRTDLV--GEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE 311 (438)
Q Consensus 237 ~~~~~~~--~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~ 311 (438)
++...++ .+|.|+.+.+++.+|+.. .++||||||+|.+...+...+ ...++.+.|...+..+++.+|++||.+
T Consensus 248 l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~--g~~d~~nlLkp~L~~g~i~vIgATt~~ 325 (758)
T PRK11034 248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG--GQVDAANLIKPLLSSGKIRVIGSTTYQ 325 (758)
T ss_pred ccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCC--cHHHHHHHHHHHHhCCCeEEEecCChH
Confidence 6655555 457888888888887653 568999999999987654221 123456778888889999999999999
Q ss_pred hHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhcccccc
Q 013706 312 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG 391 (438)
Q Consensus 312 ~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 391 (438)
.+...+..||+|.||| ..|.+++|+.+++.+|++....+... .-...++++++........ ++.+.|
T Consensus 326 E~~~~~~~D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~~~ye~-------~h~v~i~~~al~~a~~ls~-----ryi~~r 392 (758)
T PRK11034 326 EFSNIFEKDRALARRF-QKIDITEPSIEETVQIINGLKPKYEA-------HHDVRYTAKAVRAAVELAV-----KYINDR 392 (758)
T ss_pred HHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHhhh-------ccCCCcCHHHHHHHHHHhh-----ccccCc
Confidence 8887788899999999 58999999999999999987665432 1234566777765544221 112223
Q ss_pred ----chHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHH
Q 013706 392 ----LVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 432 (438)
Q Consensus 392 ----~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~ 432 (438)
....+++.|.... |+... ......|+.+|+.+.+..
T Consensus 393 ~lPdKaidlldea~a~~--~~~~~---~~~~~~v~~~~i~~v~~~ 432 (758)
T PRK11034 393 HLPDKAIDVIDEAGARA--RLMPV---SKRKKTVNVADIESVVAR 432 (758)
T ss_pred cChHHHHHHHHHHHHhh--ccCcc---cccccccChhhHHHHHHH
Confidence 4556777666443 22100 011234677777666544
No 71
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.82 E-value=3.5e-20 Score=174.23 Aligned_cols=203 Identities=17% Similarity=0.231 Sum_probs=148.1
Q ss_pred hcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccc
Q 013706 164 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV 243 (438)
Q Consensus 164 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 243 (438)
++|.+...+.+.+.+..+ +....+|||+|++||||+++|++|+... .....+|+.++|+.+.
T Consensus 1 liG~S~~m~~~~~~~~~~--------------a~~~~pVLI~GE~GtGK~~lAr~iH~~s----~r~~~pfv~vnc~~~~ 62 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL--------------APLDRPVLIIGERGTGKELIAARLHYLS----KRWQGPLVKLNCAALS 62 (329)
T ss_pred CCcCCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCChHHHHHHHHHHhc----CccCCCeEEEeCCCCC
Confidence 356666666666655544 3467889999999999999999999844 3345699999998653
Q ss_pred c-----cccccchH-------HHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-----------
Q 013706 244 G-----EFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG----------- 300 (438)
Q Consensus 244 ~-----~~~g~~~~-------~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~----------- 300 (438)
. ..+|+... .....|+.|.+|+||||||+.|....| ..|+..++++
T Consensus 63 ~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q-----------~~Ll~~l~~~~~~~~g~~~~~ 131 (329)
T TIGR02974 63 ENLLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASLLVQ-----------EKLLRVIEYGEFERVGGSQTL 131 (329)
T ss_pred hHHHHHHHhccccccccCcccccCCchhhCCCCEEEeCChHhCCHHHH-----------HHHHHHHHcCcEEecCCCcee
Confidence 2 34554211 123458889999999999999987544 7888888653
Q ss_pred --CEEEEEecCChhHHHHhh--hCcCccCCC-CcceeCCCCC--HHHHHHHHHHHHhccccccccccccccccccHHHHH
Q 013706 301 --KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA 373 (438)
Q Consensus 301 --~v~vi~~~~~~~~~~~~~--~~p~l~~R~-~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 373 (438)
++.+|++++.+....+.. -.+.|..|| ...|.+|++. .+++..++..++.+.... ++......++++++.
T Consensus 132 ~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~---~~~~~~~~ls~~a~~ 208 (329)
T TIGR02974 132 QVDVRLVCATNADLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARE---LGLPLFPGFTPQARE 208 (329)
T ss_pred ccceEEEEechhhHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHH---hCCCCCCCcCHHHHH
Confidence 357888876654332211 135667788 5689999998 589999999998875431 122221468999999
Q ss_pred HHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 374 ALIEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 374 ~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
.+..+.| |||.|+|++++++++..+
T Consensus 209 ~L~~y~W------PGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 209 QLLEYHW------PGNVRELKNVVERSVYRH 233 (329)
T ss_pred HHHhCCC------CchHHHHHHHHHHHHHhC
Confidence 9999999 999999999999998765
No 72
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.82 E-value=9.4e-21 Score=181.58 Aligned_cols=131 Identities=32% Similarity=0.418 Sum_probs=117.6
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
.|.|||||||.+||+.+|.+|++ +|++++.+|.+|.||||+|++.||...+-+|+..|+|++.+|.+|+||||||+
T Consensus 111 l~stPLHWAar~G~~~vv~lLlq----hGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAa 186 (600)
T KOG0509|consen 111 LGSTPLHWAARNGHISVVDLLLQ----HGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAA 186 (600)
T ss_pred CCCCcchHHHHcCcHHHHHHHHH----cCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHH
Confidence 57899999999999999999999 79999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcHHHHHHHHhCCCCCcccC-CCCCccccccccCCCchhHHHHHHhccchHHHHH
Q 013706 83 WYSIRSEDYATVKTLLEYNADCSAKD-NEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 142 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d-~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~~ 142 (438)
.+|....+..||..|+.+...| ..|.||||+++. .++..++.++++.+++.++.+
T Consensus 187 ----ykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~-~gN~~~v~Ll~~g~~~~d~~~ 242 (600)
T KOG0509|consen 187 ----YKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVV-GGNLTAVKLLLEGGADLDKTN 242 (600)
T ss_pred ----HhcccHHHHHHHHhcccccccccccCCchHHHHHh-cCCcceEehhhhcCCcccccc
Confidence 8888887999999999999988 899999955444 566666668888877665554
No 73
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.82 E-value=4e-19 Score=183.76 Aligned_cols=238 Identities=16% Similarity=0.224 Sum_probs=168.8
Q ss_pred hHHHHHHHHhh-hcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC
Q 013706 153 KMDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT 231 (438)
Q Consensus 153 ~~~~~~~~l~~-i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~ 231 (438)
.+......++. ..|++.+|++|.+++..... ........++|+||||+|||++++.+|+.++.
T Consensus 312 ~~~~~~~~l~~~~~g~~~vK~~i~~~l~~~~~----------~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~------ 375 (784)
T PRK10787 312 DLRQAQEILDTDHYGLERVKDRILEYLAVQSR----------VNKIKGPILCLVGPPGVGKTSLGQSIAKATGR------ 375 (784)
T ss_pred cHHHHHHHhhhhccCHHHHHHHHHHHHHHHHh----------cccCCCceEEEECCCCCCHHHHHHHHHHHhCC------
Confidence 44555566765 89999999999988663321 01124457999999999999999999998865
Q ss_pred CCEEEeeccccc---------ccccccchHHHHHHHHHc--cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-
Q 013706 232 DRVTEVQRTDLV---------GEFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG- 299 (438)
Q Consensus 232 ~~~~~~~~~~~~---------~~~~g~~~~~~~~~~~~a--~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~- 299 (438)
+++.++.+... ..|+|.....+...+..+ .+.|+||||+|++.+..+++ ..+.|++.+|.
T Consensus 376 -~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~-------~~~aLlevld~~ 447 (784)
T PRK10787 376 -KYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGD-------PASALLEVLDPE 447 (784)
T ss_pred -CEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCC-------HHHHHHHHhccc
Confidence 66666544321 236777666776667665 35899999999999865532 23677777763
Q ss_pred ----------------CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhc-cccccccccc-
Q 013706 300 ----------------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNN-QTEDSLLYGF- 361 (438)
Q Consensus 300 ----------------~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~-~~~~~~~~~~- 361 (438)
+++++|+|++.- . .+|+|++|| .+|.|++|+.+|..+|+++++.. ..++ .++
T Consensus 448 ~~~~~~d~~~~~~~dls~v~~i~TaN~~---~---i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~---~~l~ 517 (784)
T PRK10787 448 QNVAFSDHYLEVDYDLSDVMFVATSNSM---N---IPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIER---NALK 517 (784)
T ss_pred cEEEEecccccccccCCceEEEEcCCCC---C---CCHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHH---hCCC
Confidence 567888765442 2 399999999 68999999999999999999963 2111 122
Q ss_pred cccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHH
Q 013706 362 KLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 431 (438)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~ 431 (438)
.....++++++..++.+|. ....+|.++..+++.++....++..+. ......|+.+++++.+.
T Consensus 518 ~~~l~i~~~ai~~ii~~yt-----~e~GaR~LeR~I~~i~r~~l~~~~~~~--~~~~v~v~~~~~~~~lg 580 (784)
T PRK10787 518 KGELTVDDSAIIGIIRYYT-----REAGVRSLEREISKLCRKAVKQLLLDK--SLKHIEINGDNLHDYLG 580 (784)
T ss_pred CCeEEECHHHHHHHHHhCC-----cccCCcHHHHHHHHHHHHHHHHHHhcC--CCceeeecHHHHHHHhC
Confidence 2345688999999998664 244579999999999988877754221 11235688888887664
No 74
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.82 E-value=6.8e-20 Score=172.58 Aligned_cols=207 Identities=17% Similarity=0.210 Sum_probs=153.4
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 239 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 239 (438)
.+++++|.+...+.+.+.+..+ +....+|+|+|++||||+++|++|+.. +.....+|+.++|
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~--------------a~~~~pVlI~GE~GtGK~~lA~~iH~~----s~r~~~pfv~v~c 65 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRL--------------APLDKPVLIIGERGTGKELIASRLHYL----SSRWQGPFISLNC 65 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCCcHHHHHHHHHHh----CCccCCCeEEEeC
Confidence 4678899998888888776655 346789999999999999999999973 3334569999999
Q ss_pred cccc-----ccccccchH-------HHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-------
Q 013706 240 TDLV-----GEFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------- 300 (438)
Q Consensus 240 ~~~~-----~~~~g~~~~-------~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------- 300 (438)
..+. ..++|+... .....|+.+.+|+|||||++.|.+..| ..|+..++++
T Consensus 66 ~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q-----------~~L~~~l~~~~~~~~g~ 134 (326)
T PRK11608 66 AALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQ-----------EKLLRVIEYGELERVGG 134 (326)
T ss_pred CCCCHHHHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCHHHH-----------HHHHHHHhcCcEEeCCC
Confidence 8753 335554321 123457889999999999999987544 7888887653
Q ss_pred ------CEEEEEecCChhHHHHh--hhCcCccCCC-CcceeCCCCCH--HHHHHHHHHHHhccccccccccccccccccH
Q 013706 301 ------KVVVIFAGYSEPMKRVI--ASNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSM 369 (438)
Q Consensus 301 ------~v~vi~~~~~~~~~~~~--~~~p~l~~R~-~~~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~ 369 (438)
++.+|++++.+....+. ...+.|..|| ...|.+|++.. +|+..++..++.+.... ++......++.
T Consensus 135 ~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~---~~~~~~~~~s~ 211 (326)
T PRK11608 135 SQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRE---LGLPLFPGFTE 211 (326)
T ss_pred CceeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHH---hCCCCCCCCCH
Confidence 36777776655432221 0135667788 66899999985 78999999998775421 22222246899
Q ss_pred HHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 370 DAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
+++..+..+.| |||.++|++++++++..+
T Consensus 212 ~al~~L~~y~W------PGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 212 RARETLLNYRW------PGNIRELKNVVERSVYRH 240 (326)
T ss_pred HHHHHHHhCCC------CcHHHHHHHHHHHHHHhc
Confidence 99999999999 999999999999998753
No 75
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.81 E-value=6.6e-19 Score=184.21 Aligned_cols=193 Identities=19% Similarity=0.191 Sum_probs=144.4
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcC---CcCCCCEE
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVT 235 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~---~~~~~~~~ 235 (438)
..++.++|++....++.+++. .+...+++|+||||||||++|+.+|+.+.... .+....++
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~----------------r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~ 247 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILL----------------RRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLL 247 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHh----------------cCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEE
Confidence 457889999987555554421 23556899999999999999999999885322 22334567
Q ss_pred Eeeccccc--ccccccchHHHHHHHHHcc----CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecC
Q 013706 236 EVQRTDLV--GEFVGHTGPKTRRRIKEAE----GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY 309 (438)
Q Consensus 236 ~~~~~~~~--~~~~g~~~~~~~~~~~~a~----~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~ 309 (438)
.++.+.+. ..+.|+.+..++.+|+++. +.||||||+|.+...+.+.+. ..+-+.|+..++.|.+.+|+|||
T Consensus 248 ~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~---~d~~n~Lkp~l~~G~l~~IgaTT 324 (852)
T TIGR03345 248 SLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ---GDAANLLKPALARGELRTIAATT 324 (852)
T ss_pred EeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc---ccHHHHhhHHhhCCCeEEEEecC
Confidence 77777665 3688999999999998763 479999999999876542211 12347788999999999999999
Q ss_pred ChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHH
Q 013706 310 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK 378 (438)
Q Consensus 310 ~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (438)
.+.+...+..||+|+||| ..|.+++|+.++..+|++........ .....++++++..+...
T Consensus 325 ~~e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~-------~~~v~i~d~al~~~~~l 385 (852)
T TIGR03345 325 WAEYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEK-------HHGVLILDEAVVAAVEL 385 (852)
T ss_pred HHHHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhh-------cCCCeeCHHHHHHHHHH
Confidence 988877777899999999 68999999999999998665544321 11244567777766553
No 76
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.81 E-value=2.9e-19 Score=157.82 Aligned_cols=191 Identities=19% Similarity=0.219 Sum_probs=137.0
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|+++.|++.+.+.+...+.. ...+++|||||||||||+.|+++|++++.+... ...+.+.+
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~----------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~-~~rvl~ln 95 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLR----------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLF-PCRVLELN 95 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhh----------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCcccc-ccchhhhc
Confidence 4689999999999988876432 245799999999999999999999999753322 22345566
Q ss_pred cccccccccccchH-HHHHHHHHc---------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEE
Q 013706 239 RTDLVGEFVGHTGP-KTRRRIKEA---------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIF 306 (438)
Q Consensus 239 ~~~~~~~~~g~~~~-~~~~~~~~a---------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~ 306 (438)
.++..+.-++.... ...+..... ...|++|||.|.|....| ++|.+.||+ ..+++|+
T Consensus 96 aSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq-----------~aLrr~mE~~s~~trFiL 164 (346)
T KOG0989|consen 96 ASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQ-----------AALRRTMEDFSRTTRFIL 164 (346)
T ss_pred ccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHH-----------HHHHHHHhccccceEEEE
Confidence 66655554433211 111111111 117999999999987544 899999987 3444444
Q ss_pred -ecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706 307 -AGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 385 (438)
Q Consensus 307 -~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (438)
+++... + .+++.+|+ .++.|+++..+.+...|+....++. .+++++++..++...
T Consensus 165 Icnylsr---i---i~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E~-----------v~~d~~al~~I~~~S------ 220 (346)
T KOG0989|consen 165 ICNYLSR---I---IRPLVSRC-QKFRFKKLKDEDIVDRLEKIASKEG-----------VDIDDDALKLIAKIS------ 220 (346)
T ss_pred EcCChhh---C---ChHHHhhH-HHhcCCCcchHHHHHHHHHHHHHhC-----------CCCCHHHHHHHHHHc------
Confidence 444433 3 67788998 8999999999999999999988764 456788888888865
Q ss_pred ccccccchHHHHHHHHH
Q 013706 386 REMNGGLVDPMLVNARE 402 (438)
Q Consensus 386 ~~~n~~~l~~~~~~a~~ 402 (438)
.|+.|....+++.+..
T Consensus 221 -~GdLR~Ait~Lqsls~ 236 (346)
T KOG0989|consen 221 -DGDLRRAITTLQSLSL 236 (346)
T ss_pred -CCcHHHHHHHHHHhhc
Confidence 6777778888887766
No 77
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.81 E-value=1.2e-19 Score=154.60 Aligned_cols=131 Identities=20% Similarity=0.208 Sum_probs=113.4
Q ss_pred CCCCcHHHHHHHcCCH----HHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHH---HHHHHHCCCCccccc-CC
Q 013706 2 QMAQTPLHVSAGYNKA----EIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEA---AKLLLAHGAFIEAKA-NN 73 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~---v~~Ll~~g~~~~~~~-~~ 73 (438)
..+.++||.||..|+. +++++|++ .+..++.+|..|+||||+|+..|+.+. +++|++.|+++|.++ ..
T Consensus 18 ~~~~~~l~~a~~~g~~~~l~~~~~~l~~----~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~ 93 (166)
T PHA02743 18 EDEQNTFLRICRTGNIYELMEVAPFISG----DGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGT 93 (166)
T ss_pred cCCCcHHHHHHHcCCHHHHHHHHHHHhh----cchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCC
Confidence 3578899999999998 55556666 688899999999999999999988654 899999999999998 58
Q ss_pred CCcHHHHHhhcccccCcHHHHHHHHh-CCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706 74 GMTPLHLSVWYSIRSEDYATVKTLLE-YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 141 (438)
Q Consensus 74 g~t~L~~A~~~~~~~~~~~~~~~Ll~-~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~ 141 (438)
|.||||+|+ ..++.+++++|+. .|++++.+|..|+||| +.+...+..+++++|+.++++...+
T Consensus 94 g~TpLh~A~----~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL-~~A~~~~~~~iv~~Ll~~ga~~~~~ 157 (166)
T PHA02743 94 GNTLLHIAA----STKNYELAEWLCRQLGVNLGAINYQHETAY-HIAYKMRDRRMMEILRANGAVCDDP 157 (166)
T ss_pred CCcHHHHHH----HhCCHHHHHHHHhccCCCccCcCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCCCc
Confidence 999999999 7899999999995 7999999999999999 5555667888999999888765443
No 78
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.81 E-value=8.6e-20 Score=184.16 Aligned_cols=205 Identities=19% Similarity=0.234 Sum_probs=153.6
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 239 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 239 (438)
.++.++|.+...+++.+.+..+ +....+|||+||+|||||++|++|+... .....+|+.++|
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~--------------a~~~~pvli~Ge~GtGK~~lA~~ih~~s----~r~~~pfv~i~c 255 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVV--------------ARSNSTVLLRGESGTGKELIAKAIHYLS----PRAKRPFVKVNC 255 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHH--------------hCcCCCEEEECCCCccHHHHHHHHHHhC----CCCCCCeEEeec
Confidence 4678999999888888776654 3467789999999999999999999844 334569999999
Q ss_pred ccccc-----cccccchH-------HHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-------
Q 013706 240 TDLVG-----EFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------- 300 (438)
Q Consensus 240 ~~~~~-----~~~g~~~~-------~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------- 300 (438)
+.+.. ..+|+... .....|+.+.+|+||||||+.|.+..| ..|+..++++
T Consensus 256 ~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q-----------~~Ll~~l~~~~~~~~~~ 324 (534)
T TIGR01817 256 AALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQ-----------AKLLRVLQEGEFERVGG 324 (534)
T ss_pred CCCCHHHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHH-----------HHHHHHHhcCcEEECCC
Confidence 86532 34454321 112347788899999999999987555 8888888653
Q ss_pred ------CEEEEEecCChhHHHHhh--hCcCccCCC-CcceeCCCCC--HHHHHHHHHHHHhccccccccccccccccccH
Q 013706 301 ------KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSM 369 (438)
Q Consensus 301 ------~v~vi~~~~~~~~~~~~~--~~p~l~~R~-~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~ 369 (438)
++.+|++++.+....+.. -.+.|..|+ ...|.+|++. .+++..++..++.+... .+.....+++
T Consensus 325 ~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~-----~~~~~~~~s~ 399 (534)
T TIGR01817 325 NRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNR-----ENGRPLTITP 399 (534)
T ss_pred CceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHH-----HcCCCCCCCH
Confidence 367888877665443310 124455577 4578899998 68999999999987643 1222357899
Q ss_pred HHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 370 DAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
+++..+..+.| |||.|+|++++++++...
T Consensus 400 ~a~~~L~~~~W------PGNvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 400 SAIRVLMSCKW------PGNVRELENCLERTATLS 428 (534)
T ss_pred HHHHHHHhCCC------CChHHHHHHHHHHHHHhC
Confidence 99999999999 999999999999998654
No 79
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=8.1e-19 Score=168.73 Aligned_cols=189 Identities=15% Similarity=0.164 Sum_probs=136.0
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC-------
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT------- 231 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~------- 231 (438)
..|++++|++.+...|...+.. ...+..+||+||||||||++|+.+|+.++.......
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~---------------~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~ 79 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKS---------------GKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT 79 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc
Confidence 4799999999999988876431 112334899999999999999999998864321111
Q ss_pred ----------CCEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706 232 ----------DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 294 (438)
Q Consensus 232 ----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll 294 (438)
..+++++++.- .....++.+.+.+ +..|+||||+|.|.. .+.+.||
T Consensus 80 sC~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~-----------~A~NALL 142 (484)
T PRK14956 80 SCLEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD-----------QSFNALL 142 (484)
T ss_pred HHHHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH-----------HHHHHHH
Confidence 12333333210 1122334433322 336999999999976 4569999
Q ss_pred hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706 295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 372 (438)
Q Consensus 295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~ 372 (438)
..|++ ..+++|++|+.. ..+ .|++++|+ ..+.|.+++.+++.+.+++.+.++. ..++++++
T Consensus 143 KtLEEPp~~viFILaTte~--~kI---~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Eg-----------i~~e~eAL 205 (484)
T PRK14956 143 KTLEEPPAHIVFILATTEF--HKI---PETILSRC-QDFIFKKVPLSVLQDYSEKLCKIEN-----------VQYDQEGL 205 (484)
T ss_pred HHhhcCCCceEEEeecCCh--hhc---cHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99998 778888887652 333 78899998 8899999999999999999887642 34677888
Q ss_pred HHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706 373 AALIEKETTEKQRREMNGGLVDPMLVNAREN 403 (438)
Q Consensus 373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~ 403 (438)
..++... .|+.|+..+++++++..
T Consensus 206 ~~Ia~~S-------~Gd~RdAL~lLeq~i~~ 229 (484)
T PRK14956 206 FWIAKKG-------DGSVRDMLSFMEQAIVF 229 (484)
T ss_pred HHHHHHc-------CChHHHHHHHHHHHHHh
Confidence 8888765 68889999999987643
No 80
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.5e-18 Score=153.74 Aligned_cols=241 Identities=17% Similarity=0.307 Sum_probs=163.3
Q ss_pred hhHHHHHHHHhh-hcChHHHHHHHHHHHHHhhhHHHHHhcC-C-CCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706 152 AKMDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALG-L-KVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI 228 (438)
Q Consensus 152 ~~~~~~~~~l~~-i~G~~~~~~~l~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~ 228 (438)
....+....+++ ++|++..|+.+.=.+ -..++|-... . ..-.....|+||.||+|+|||.+|+.+|+.++.
T Consensus 50 PtP~eik~~Ld~YVIGQe~AKKvLsVAV---YNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnV--- 123 (408)
T COG1219 50 PTPKEIKAHLDEYVIGQEQAKKVLSVAV---YNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNV--- 123 (408)
T ss_pred CChHHHHHHhhhheecchhhhceeeeee---hhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCC---
Confidence 445566666665 689999988765321 1111111111 1 111124679999999999999999999999988
Q ss_pred cCCCCEEEeecccccc-cccccchHH-HHHHH-------HHccCcEEEEeCcccccCCCCCCC---chhHHHHHHHHHhh
Q 013706 229 LPTDRVTEVQRTDLVG-EFVGHTGPK-TRRRI-------KEAEGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSV 296 (438)
Q Consensus 229 ~~~~~~~~~~~~~~~~-~~~g~~~~~-~~~~~-------~~a~~~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~ 296 (438)
||-..++..+.. .|+|+--.+ +-+++ +.|+.||+||||||+++.+..+.+ +-.+..+..+||..
T Consensus 124 ----PFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKi 199 (408)
T COG1219 124 ----PFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKI 199 (408)
T ss_pred ----CeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHH
Confidence 888888887754 489984444 34444 445679999999999998765332 23456788999999
Q ss_pred ccC-----------------------CCEEEEEecCChhHHHHhhhC---------------------------------
Q 013706 297 MDG-----------------------GKVVVIFAGYSEPMKRVIASN--------------------------------- 320 (438)
Q Consensus 297 ~~~-----------------------~~v~vi~~~~~~~~~~~~~~~--------------------------------- 320 (438)
+++ .++.+|+.+--..++.++...
T Consensus 200 iEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDL 279 (408)
T COG1219 200 IEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDL 279 (408)
T ss_pred HcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHH
Confidence 986 146777766444444333221
Q ss_pred ------cCccCCCCcceeCCCCCHHHHHHHHH---HHHhccccccccccc-cccccccHHHHHHHHHHHhhHhhhccccc
Q 013706 321 ------EGFCRRVTKFFHFNDFNSEELAKILH---IKMNNQTEDSLLYGF-KLHSSCSMDAIAALIEKETTEKQRREMNG 390 (438)
Q Consensus 321 ------p~l~~R~~~~i~~~~~~~~e~~~il~---~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 390 (438)
|.+..|++.+-.+..++.+++..||. +.+-++... .+++ .+...++++++.++++... .+...+
T Consensus 280 vkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~--Lf~~d~V~L~F~~~AL~~IA~~A~----~rkTGA 353 (408)
T COG1219 280 VKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQK--LFEMDGVELEFTEEALKAIAKKAI----ERKTGA 353 (408)
T ss_pred HHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHH--HhcccCceEEEcHHHHHHHHHHHH----Hhccch
Confidence 88999999999999999999999983 222222111 1122 3445678899999988764 345668
Q ss_pred cchHHHHHHHHHHhhccc
Q 013706 391 GLVDPMLVNARENLDLRL 408 (438)
Q Consensus 391 ~~l~~~~~~a~~~~~~r~ 408 (438)
|.||.++|.........+
T Consensus 354 RGLRsI~E~~lld~Mfel 371 (408)
T COG1219 354 RGLRSIIEELLLDVMFEL 371 (408)
T ss_pred hHHHHHHHHHHHHHHhhC
Confidence 999999998887754333
No 81
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.80 E-value=2.7e-18 Score=163.76 Aligned_cols=258 Identities=16% Similarity=0.219 Sum_probs=164.8
Q ss_pred hHHHHHHHHhh-hcChHHHHHHHHHHHHHhhhHHHHHhc---CCC-C-CCCCCCceEEecCCCCCHHHHHHHHHHHHHHc
Q 013706 153 KMDELENELSN-IVGLHELKIQLRKWAKGMLLDERRKAL---GLK-V-GARRPPHMAFLGNPGTGKTMVARILGRLLYMV 226 (438)
Q Consensus 153 ~~~~~~~~l~~-i~G~~~~~~~l~~~~~~~~~~~~~~~~---~~~-~-~~~~~~~~ll~GppGtGKT~la~~la~~l~~~ 226 (438)
...++...+++ ++|++.+++.+...+... .++... ... . ......++||+||||||||++|+++|+.++.
T Consensus 67 ~p~~i~~~L~~~ViGQe~A~~~l~~av~~h---~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~- 142 (413)
T TIGR00382 67 TPKEIKAHLDEYVIGQEQAKKVLSVAVYNH---YKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNV- 142 (413)
T ss_pred CHHHHHHHhcceecCHHHHHHHHHHHHHHH---HhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCC-
Confidence 45667777765 589999999887543211 111111 000 0 0123568999999999999999999988764
Q ss_pred CCcCCCCEEEeeccccc-ccccccc-hHHHHHHH-------HHccCcEEEEeCcccccCCCCCCC---chhHHHHHHHHH
Q 013706 227 GILPTDRVTEVQRTDLV-GEFVGHT-GPKTRRRI-------KEAEGGILFVDEAYRLIPMQKADD---KDYGIEALEEIM 294 (438)
Q Consensus 227 ~~~~~~~~~~~~~~~~~-~~~~g~~-~~~~~~~~-------~~a~~~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll 294 (438)
+|..++++.+. ..|+|+. +..+...+ +.+.++||||||+|++.+++.+.+ ...+..+++.||
T Consensus 143 ------pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL 216 (413)
T TIGR00382 143 ------PFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALL 216 (413)
T ss_pred ------CeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHH
Confidence 77778877654 3588874 33344433 456779999999999998644221 122346888899
Q ss_pred hhccCC---------------CEEEEEecCC--------hhH---------------------------H--------HH
Q 013706 295 SVMDGG---------------KVVVIFAGYS--------EPM---------------------------K--------RV 316 (438)
Q Consensus 295 ~~~~~~---------------~v~vi~~~~~--------~~~---------------------------~--------~~ 316 (438)
+.|++. ..++|.|++- ... . .+
T Consensus 217 ~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl 296 (413)
T TIGR00382 217 KIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDL 296 (413)
T ss_pred HHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHH
Confidence 988641 1234444332 000 0 00
Q ss_pred hh--hCcCccCCCCcceeCCCCCHHHHHHHHHHH----HhccccccccccccccccccHHHHHHHHHHHhhHhhhccccc
Q 013706 317 IA--SNEGFCRRVTKFFHFNDFNSEELAKILHIK----MNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 390 (438)
Q Consensus 317 ~~--~~p~l~~R~~~~i~~~~~~~~e~~~il~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 390 (438)
.. ..|+|..|++.++.|.+++.+++.+|+... +++..+..... .+...++++++..+++..+ .....+
T Consensus 297 ~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~--gi~L~~t~~a~~~Ia~~~~----~~~~GA 370 (413)
T TIGR00382 297 VKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMD--NVELDFEEEALKAIAKKAL----ERKTGA 370 (413)
T ss_pred HHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccC--CeEEEECHHHHHHHHHhCC----CCCCCc
Confidence 00 239999999999999999999999999764 33222111111 4456678999999998754 124557
Q ss_pred cchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHH
Q 013706 391 GLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEA 428 (438)
Q Consensus 391 ~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~ 428 (438)
|.|+.++++........+.... ......|+.+.+.+
T Consensus 371 R~Lr~iie~~l~~~m~e~p~~~--~~~~v~i~~~~v~~ 406 (413)
T TIGR00382 371 RGLRSIVEGLLLDVMFDLPSLE--DLEKVVITKETVLK 406 (413)
T ss_pred hHHHHHHHHhhHHHHhhCCCCC--CCcEEEECHHHHcC
Confidence 9999999999988765554321 12224566666543
No 82
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.80 E-value=1.4e-19 Score=148.55 Aligned_cols=121 Identities=27% Similarity=0.517 Sum_probs=103.2
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHc---c-CcEEEEeCcccccCC
Q 013706 202 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---E-GGILFVDEAYRLIPM 277 (438)
Q Consensus 202 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a---~-~~il~iDEid~l~~~ 277 (438)
+||+||||||||++|+.+|+.++. +++.+++.++.+.+.+++...+.+.|.++ . ++||||||+|.+.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-------~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~ 73 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-------PFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPK 73 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-------EEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHH
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-------ccccccccccccccccccccccccccccccccccceeeeeccchhcccc
Confidence 689999999999999999998865 89999999999999999999999999886 3 699999999999987
Q ss_pred CCCCCchhHHHHHHHHHhhccC-----CCEEEEEecCChhHHHHhhhCcCcc-CCCCcceeCC
Q 013706 278 QKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYSEPMKRVIASNEGFC-RRVTKFFHFN 334 (438)
Q Consensus 278 ~~~~~~~~~~~~~~~ll~~~~~-----~~v~vi~~~~~~~~~~~~~~~p~l~-~R~~~~i~~~ 334 (438)
.+...+.....+++.|+..+++ .++++|++++. .+.+ +|+++ +||+..|++|
T Consensus 74 ~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~--~~~i---~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 74 SQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS--PDKI---DPALLRSRFDRRIEFP 131 (132)
T ss_dssp CSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS--GGGS---CHHHHSTTSEEEEEE-
T ss_pred cccccccccccccceeeecccccccccccceeEEeeCC--hhhC---CHhHHhCCCcEEEEcC
Confidence 7545667777888999999976 34888888766 3333 89999 9999999886
No 83
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.80 E-value=3.6e-19 Score=175.15 Aligned_cols=127 Identities=26% Similarity=0.295 Sum_probs=76.3
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCccc-ccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL-EAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
.|.||||.|+..|+.++|++|++ .+..+ +..+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|
T Consensus 67 ~~~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A 142 (413)
T PHA02875 67 DIESELHDAVEEGDVKAVEELLD----LGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLA 142 (413)
T ss_pred CcccHHHHHHHCCCHHHHHHHHH----cCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Confidence 45666666666666666666665 23322 23344566666666666666666666666666666666666666666
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchH
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQ 138 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~ 138 (438)
+ ..|+.+++++|+++|++++..|..|+||| |.|+..++.+++++|+..|++.
T Consensus 143 ~----~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL-~~A~~~g~~eiv~~Ll~~ga~~ 194 (413)
T PHA02875 143 V----MMGDIKGIELLIDHKACLDIEDCCGCTPL-IIAMAKGDIAICKMLLDSGANI 194 (413)
T ss_pred H----HcCCHHHHHHHHhcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHhCCCCC
Confidence 6 55666666666666666666666666666 3344445556666666655543
No 84
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.79 E-value=2e-18 Score=172.08 Aligned_cols=189 Identities=15% Similarity=0.194 Sum_probs=136.9
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCc-eEEecCCCCCHHHHHHHHHHHHHHcCCcCCC-----
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGILPTD----- 232 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~~~~----- 232 (438)
+.|++++|++.+++.|..++. .....| +||+||+|||||++|+++++.++........
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~----------------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C 76 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALD----------------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVC 76 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHh----------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCccc
Confidence 479999999999999988743 123334 6999999999999999999998642211111
Q ss_pred ------------CEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHH
Q 013706 233 ------------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEI 293 (438)
Q Consensus 233 ------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~l 293 (438)
.+++++.++ ......++.+++.+ +..|+||||+|.|.. ...|.|
T Consensus 77 ~sCr~I~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-----------~A~NAL 139 (830)
T PRK07003 77 RACREIDEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-----------HAFNAM 139 (830)
T ss_pred HHHHHHhcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-----------HHHHHH
Confidence 133333321 11223455565543 347999999999975 345999
Q ss_pred HhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHH
Q 013706 294 MSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA 371 (438)
Q Consensus 294 l~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 371 (438)
|+.|++ ..+.||++|+... .+ .+.+++|+ .+|.|..++.+++.++|++.+.++. ..++.++
T Consensus 140 LKtLEEPP~~v~FILaTtd~~--KI---p~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~Eg-----------I~id~eA 202 (830)
T PRK07003 140 LKTLEEPPPHVKFILATTDPQ--KI---PVTVLSRC-LQFNLKQMPAGHIVSHLERILGEER-----------IAFEPQA 202 (830)
T ss_pred HHHHHhcCCCeEEEEEECChh--hc---cchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcC-----------CCCCHHH
Confidence 999987 4677777655432 33 68899999 9999999999999999999988753 3457788
Q ss_pred HHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 372 IAALIEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 372 ~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
+..+.+.. .|+.|+..++++++....
T Consensus 203 L~lIA~~A-------~GsmRdALsLLdQAia~~ 228 (830)
T PRK07003 203 LRLLARAA-------QGSMRDALSLTDQAIAYS 228 (830)
T ss_pred HHHHHHHc-------CCCHHHHHHHHHHHHHhc
Confidence 88887765 678899999988887543
No 85
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.79 E-value=1.4e-19 Score=166.77 Aligned_cols=126 Identities=31% Similarity=0.383 Sum_probs=116.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
.|-+||-.|+..||+++|+.|++ .|+++|....-+.|||--||.-||.+++++|+++|+|++..|..|.|.||+||
T Consensus 83 egappLWaAsaAGHl~vVk~L~~----~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ 158 (615)
T KOG0508|consen 83 EGAPPLWAASAAGHLEVVKLLLR----RGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIAC 158 (615)
T ss_pred CCCchhhHHhccCcHHHHHHHHH----hcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeee
Confidence 57789999999999999999999 67999998888899999999999999999999999999999999999999999
Q ss_pred hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706 83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~ 137 (438)
.+|+.+++++|++.|+|+|.++..|+|+| |.|...++.+++++|+++++.
T Consensus 159 ----ykGh~~I~qyLle~gADvn~ks~kGNTAL-H~caEsG~vdivq~Ll~~ga~ 208 (615)
T KOG0508|consen 159 ----YKGHVDIAQYLLEQGADVNAKSYKGNTAL-HDCAESGSVDIVQLLLKHGAK 208 (615)
T ss_pred ----ccCchHHHHHHHHhCCCcchhcccCchHH-HhhhhcccHHHHHHHHhCCce
Confidence 89999999999999999999999999999 666667889999999987654
No 86
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=1.3e-18 Score=170.21 Aligned_cols=189 Identities=20% Similarity=0.219 Sum_probs=133.6
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC-------
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT------- 231 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~------- 231 (438)
..|++++|++.+++.|...+.. ...+..+||+||||||||++|+++|+.+........
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~---------------~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~ 75 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKK---------------NSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECR 75 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccH
Confidence 4689999999998888775331 123445899999999999999999998864221111
Q ss_pred ----------CCEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706 232 ----------DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 294 (438)
Q Consensus 232 ----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll 294 (438)
..+++++++.- .....++++.+.+ ...||||||+|.+.. ..++.|+
T Consensus 76 ~c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~-----------~a~~~LL 138 (472)
T PRK14962 76 ACRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK-----------EAFNALL 138 (472)
T ss_pred HHHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH-----------HHHHHHH
Confidence 12444444321 1122344443332 347999999999964 3458899
Q ss_pred hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706 295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 372 (438)
Q Consensus 295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~ 372 (438)
..+++ +.+++|++++... .+ ++++++|+ ..+.|.+++.+++..+++..+.... ..++++++
T Consensus 139 k~LE~p~~~vv~Ilattn~~--kl---~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~eg-----------i~i~~eal 201 (472)
T PRK14962 139 KTLEEPPSHVVFVLATTNLE--KV---PPTIISRC-QVIEFRNISDELIIKRLQEVAEAEG-----------IEIDREAL 201 (472)
T ss_pred HHHHhCCCcEEEEEEeCChH--hh---hHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99987 6677777665322 33 78899998 7999999999999999998887542 34677888
Q ss_pred HHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706 373 AALIEKETTEKQRREMNGGLVDPMLVNAREN 403 (438)
Q Consensus 373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~ 403 (438)
..++... .|+.|.+.+.++.+...
T Consensus 202 ~~Ia~~s-------~GdlR~aln~Le~l~~~ 225 (472)
T PRK14962 202 SFIAKRA-------SGGLRDALTMLEQVWKF 225 (472)
T ss_pred HHHHHHh-------CCCHHHHHHHHHHHHHh
Confidence 8888865 57788888888876654
No 87
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.79 E-value=3.1e-18 Score=175.81 Aligned_cols=219 Identities=18% Similarity=0.257 Sum_probs=154.0
Q ss_pred HHHHHHh-hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCE
Q 013706 156 ELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV 234 (438)
Q Consensus 156 ~~~~~l~-~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~ 234 (438)
.+...+. .++|++.+++.+.+.+.... .+.....++..++||+||||||||.+|+++|+.++. ++
T Consensus 451 ~l~~~L~~~ViGQ~~ai~~l~~~i~~~~-------~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~-------~~ 516 (758)
T PRK11034 451 NLGDRLKMLVFGQDKAIEALTEAIKMSR-------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-------EL 516 (758)
T ss_pred HHHHHhcceEeCcHHHHHHHHHHHHHHh-------ccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC-------Cc
Confidence 3444443 47899999998888765432 222222234457999999999999999999998854 67
Q ss_pred EEeeccccc-----cccc-------ccc-hHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-
Q 013706 235 TEVQRTDLV-----GEFV-------GHT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG- 300 (438)
Q Consensus 235 ~~~~~~~~~-----~~~~-------g~~-~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~- 300 (438)
+.++++++. ..++ |.. ...+...+.....+||||||||++.+ ++.+.|++.||++
T Consensus 517 i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~-----------~v~~~LLq~ld~G~ 585 (758)
T PRK11034 517 LRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP-----------DVFNLLLQVMDNGT 585 (758)
T ss_pred EEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH-----------HHHHHHHHHHhcCe
Confidence 777766542 2233 321 23455566666779999999999986 5669999999853
Q ss_pred ------------CEEEEEecCChhH-------------------HHH-hhhCcCccCCCCcceeCCCCCHHHHHHHHHHH
Q 013706 301 ------------KVVVIFAGYSEPM-------------------KRV-IASNEGFCRRVTKFFHFNDFNSEELAKILHIK 348 (438)
Q Consensus 301 ------------~v~vi~~~~~~~~-------------------~~~-~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~ 348 (438)
+.++|++++...- ..+ -.-.|+|+.|+|.+|.|++++.+++.+|+..+
T Consensus 586 ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~ 665 (758)
T PRK11034 586 LTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKF 665 (758)
T ss_pred eecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHH
Confidence 3467777762210 000 01248999999999999999999999999999
Q ss_pred HhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhh
Q 013706 349 MNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD 405 (438)
Q Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~ 405 (438)
+.+..++....+ +...++++++..++...+ + ....+|.++.++++-.....
T Consensus 666 l~~~~~~l~~~~--i~l~~~~~~~~~l~~~~~--~--~~~GAR~l~r~i~~~l~~~l 716 (758)
T PRK11034 666 IVELQAQLDQKG--VSLEVSQEARDWLAEKGY--D--RAMGARPMARVIQDNLKKPL 716 (758)
T ss_pred HHHHHHHHHHCC--CCceECHHHHHHHHHhCC--C--CCCCCchHHHHHHHHHHHHH
Confidence 988766543334 456678999999987544 1 13457999999988877654
No 88
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.79 E-value=5.2e-19 Score=174.79 Aligned_cols=206 Identities=16% Similarity=0.161 Sum_probs=148.1
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHH--c--CCcCCCCEE
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM--V--GILPTDRVT 235 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~--~--~~~~~~~~~ 235 (438)
.|++++|.+...+++.+.+..+ +....+|||+|+|||||+++|++|+..+.. . +.....+|+
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~--------------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv 282 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLY--------------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFV 282 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHH--------------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeE
Confidence 5788999999888888776544 346789999999999999999999986210 0 334567999
Q ss_pred Eeeccccc-----ccccccchH--------HHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCC-
Q 013706 236 EVQRTDLV-----GEFVGHTGP--------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK- 301 (438)
Q Consensus 236 ~~~~~~~~-----~~~~g~~~~--------~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~- 301 (438)
.++|+.+. +..+|+... .....|+.|.+|+||||||+.|.+..| ..|+..++++.
T Consensus 283 ~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q-----------~kLl~~L~e~~~ 351 (538)
T PRK15424 283 AVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQ-----------TRLLRVLEEKEV 351 (538)
T ss_pred EeecccCChhhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHH-----------HHHHhhhhcCeE
Confidence 99998653 345665321 123578899999999999999988555 88888887642
Q ss_pred ------------EEEEEecCChhHHHHhh--hCcCccCCC-CcceeCCCCCH--HHHHHHHHHHHhcccccccccccccc
Q 013706 302 ------------VVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLH 364 (438)
Q Consensus 302 ------------v~vi~~~~~~~~~~~~~--~~p~l~~R~-~~~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~~~ 364 (438)
+.+|++|+.+....+-. -.+.|..|+ ...|++|++.. +|+..++..++.+... ++ .
T Consensus 352 ~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~-----~~--~ 424 (538)
T PRK15424 352 TRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLA-----AL--S 424 (538)
T ss_pred EecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHH-----Hc--C
Confidence 47888877665432210 013344466 56778888874 7899999999987432 11 1
Q ss_pred ccccHHH-------HHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706 365 SSCSMDA-------IAALIEKETTEKQRREMNGGLVDPMLVNAREN 403 (438)
Q Consensus 365 ~~~~~~~-------~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~ 403 (438)
..++.++ +..+..+.| |||.|+|+|++++++..
T Consensus 425 ~~~~~~a~~~~~~a~~~L~~y~W------PGNvREL~nvier~~i~ 464 (538)
T PRK15424 425 APFSAALRQGLQQCETLLLHYDW------PGNVRELRNLMERLALF 464 (538)
T ss_pred CCCCHHHHHhhHHHHHHHHhCCC------CchHHHHHHHHHHHHHh
Confidence 1234444 477888889 99999999999998764
No 89
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.79 E-value=7.5e-19 Score=175.82 Aligned_cols=128 Identities=31% Similarity=0.385 Sum_probs=115.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhh
Q 013706 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW 83 (438)
Q Consensus 4 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 83 (438)
|+||||+||..|+.+++++|++ .|++++..|..|+||||+|+..|+.+++++|++.|++++.+|..|.||||+|+.
T Consensus 168 g~tpLh~A~~~~~~~iv~~Ll~----~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~ 243 (477)
T PHA02878 168 GNTALHYATENKDQRLTELLLS----YGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVG 243 (477)
T ss_pred CCCHHHHHHhCCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence 9999999999999999999999 789999999999999999999999999999999999999999999999999982
Q ss_pred cccccCcHHHHHHHHhCCCCCcccCC-CCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706 84 YSIRSEDYATVKTLLEYNADCSAKDN-EGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 141 (438)
Q Consensus 84 ~~~~~~~~~~~~~Ll~~ga~~~~~d~-~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~ 141 (438)
..++.+++++|+++|++++..+. .|.||| |.|. +..+++++|+..|++....
T Consensus 244 ---~~~~~~iv~~Ll~~gadvn~~~~~~g~TpL-h~A~--~~~~~v~~Ll~~gadin~~ 296 (477)
T PHA02878 244 ---YCKDYDILKLLLEHGVDVNAKSYILGLTAL-HSSI--KSERKLKLLLEYGADINSL 296 (477)
T ss_pred ---hcCCHHHHHHHHHcCCCCCccCCCCCCCHH-HHHc--cCHHHHHHHHHCCCCCCCc
Confidence 23689999999999999999886 799999 5553 4678899999988875544
No 90
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.78 E-value=7.7e-19 Score=173.83 Aligned_cols=204 Identities=17% Similarity=0.161 Sum_probs=152.0
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|++++|.+...+.+.+.+..+ +....+|||+|++||||+++|++|+... .....+|+.++
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~--------------A~~~~pVLI~GE~GTGKe~lA~~IH~~S----~r~~~pfv~in 270 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLY--------------ARSDATVLILGESGTGKELVAQAIHQLS----GRRDFPFVAIN 270 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHH--------------hCCCCcEEEECCCCcCHHHHHHHHHHhc----CcCCCCEEEec
Confidence 45788999999888888776544 3467899999999999999999999843 34567999999
Q ss_pred ccccc-----ccccccchH--------HHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCC----
Q 013706 239 RTDLV-----GEFVGHTGP--------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---- 301 (438)
Q Consensus 239 ~~~~~-----~~~~g~~~~--------~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~---- 301 (438)
|..+. +.++|+.+. .....|+.|.+|+||||||+.|.+..| ..|+..++++.
T Consensus 271 C~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q-----------~~Ll~~L~~~~~~r~ 339 (526)
T TIGR02329 271 CGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQ-----------TRLLRVLEEREVVRV 339 (526)
T ss_pred cccCChhHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhCCHHHH-----------HHHHHHHhcCcEEec
Confidence 98653 345665321 134578899999999999999987555 88888887643
Q ss_pred ---------EEEEEecCChhHHHHhh--hCcCccCCC-CcceeCCCCCH--HHHHHHHHHHHhccccccccccccccccc
Q 013706 302 ---------VVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSC 367 (438)
Q Consensus 302 ---------v~vi~~~~~~~~~~~~~--~~p~l~~R~-~~~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~~~~~~ 367 (438)
+.+|++++.+....+-. -.+.|..|+ ...|.+|++.. +++..++..++.+... .+ ...+
T Consensus 340 g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~-----~~--~~~~ 412 (526)
T TIGR02329 340 GGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAA-----AL--RLPD 412 (526)
T ss_pred CCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHH-----Hc--CCCC
Confidence 36777776665433210 023444577 57888999875 8999999999987642 11 2236
Q ss_pred cHHHHHH-------HHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 368 SMDAIAA-------LIEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 368 ~~~~~~~-------~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
+++++.. +..+.| |||.|+|++++++++...
T Consensus 413 ~~~a~~~~~~~~~~L~~y~W------PGNvrEL~nvier~~i~~ 450 (526)
T TIGR02329 413 SEAAAQVLAGVADPLQRYPW------PGNVRELRNLVERLALEL 450 (526)
T ss_pred CHHHHHHhHHHHHHHHhCCC------CchHHHHHHHHHHHHHhc
Confidence 7778777 999999 999999999999988653
No 91
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.78 E-value=8.6e-19 Score=140.86 Aligned_cols=121 Identities=33% Similarity=0.355 Sum_probs=108.9
Q ss_pred cHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcc
Q 013706 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYS 85 (438)
Q Consensus 6 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 85 (438)
--+.+|+..+.+..|+.||+. ..-.+|.+|.+|.||||-|+.+||.++++.|+.+|++.+++...||||||.||
T Consensus 65 rl~lwaae~nrl~eV~~lL~e---~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAc--- 138 (228)
T KOG0512|consen 65 RLLLWAAEKNRLTEVQRLLSE---KANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSAC--- 138 (228)
T ss_pred HHHHHHHhhccHHHHHHHHHh---ccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhh---
Confidence 457899999999999999984 45569999999999999999999999999999999999999999999999999
Q ss_pred cccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHh
Q 013706 86 IRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLW 133 (438)
Q Consensus 86 ~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~ 133 (438)
.-.+.+++..||++|+|++......+||||.++...+....+.+|+.
T Consensus 139 -kWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~ 185 (228)
T KOG0512|consen 139 -KWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLH 185 (228)
T ss_pred -cccchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhh
Confidence 66789999999999999999999999999666666666667777764
No 92
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.77 E-value=1.2e-18 Score=174.32 Aligned_cols=130 Identities=29% Similarity=0.409 Sum_probs=109.4
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCH----------------------------
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN---------------------------- 54 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~---------------------------- 54 (438)
.|.||||+||..|+.++|++|++ .|+++|.+|..|+||||+||..|+.
T Consensus 36 ~~~tPLh~A~~~g~~e~vk~Ll~----~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~ 111 (477)
T PHA02878 36 IPFIPLHQAVEARNLDVVKSLLT----RGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNN 111 (477)
T ss_pred cCcchHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHc
Confidence 46789999999999999999998 6888999999999999999876543
Q ss_pred ------------------------------------HHHHHHHHCCCCcccccCC-CCcHHHHHhhcccccCcHHHHHHH
Q 013706 55 ------------------------------------EAAKLLLAHGAFIEAKANN-GMTPLHLSVWYSIRSEDYATVKTL 97 (438)
Q Consensus 55 ------------------------------------~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~~~~~~~~L 97 (438)
+++++|+++|++++.++.. |.||||+|+ ..|+.+++++|
T Consensus 112 ~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~----~~~~~~iv~~L 187 (477)
T PHA02878 112 RNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYAT----ENKDQRLTELL 187 (477)
T ss_pred CCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHH----hCCCHHHHHHH
Confidence 2667777888888888888 999999999 78899999999
Q ss_pred HhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706 98 LEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 141 (438)
Q Consensus 98 l~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~ 141 (438)
+++|++++..|..|+||| |.|+..+..+++++|+..|++...+
T Consensus 188 l~~gad~n~~d~~g~tpL-h~A~~~~~~~iv~~Ll~~ga~in~~ 230 (477)
T PHA02878 188 LSYGANVNIPDKTNNSPL-HHAVKHYNKPIVHILLENGASTDAR 230 (477)
T ss_pred HHCCCCCCCcCCCCCCHH-HHHHHhCCHHHHHHHHHcCCCCCCC
Confidence 999999999999999999 5565677888899998887765443
No 93
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=8.8e-18 Score=165.84 Aligned_cols=189 Identities=18% Similarity=0.225 Sum_probs=136.6
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC------
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------ 232 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~------ 232 (438)
..|++++|++.+++.|..++.. .+.+..+||+||||||||++|+++|+.++........
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~---------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~ 76 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALER---------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCA 76 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCH
Confidence 5799999999999998887441 1234557999999999999999999998642211111
Q ss_pred -----------CEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706 233 -----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 294 (438)
Q Consensus 233 -----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll 294 (438)
.++++++++- ..-..++.+++.+ +..|+||||+|.|.+ ...+.|+
T Consensus 77 sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~-----------~A~NALL 139 (702)
T PRK14960 77 TCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST-----------HSFNALL 139 (702)
T ss_pred HHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH-----------HHHHHHH
Confidence 2344444321 1223455555443 347999999999976 3458899
Q ss_pred hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706 295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 372 (438)
Q Consensus 295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~ 372 (438)
..+++ +.+.+|++++.... + .+.+++|+ .+++|.+++.+++...++..+.++. ..++++++
T Consensus 140 KtLEEPP~~v~FILaTtd~~k--I---p~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEg-----------I~id~eAL 202 (702)
T PRK14960 140 KTLEEPPEHVKFLFATTDPQK--L---PITVISRC-LQFTLRPLAVDEITKHLGAILEKEQ-----------IAADQDAI 202 (702)
T ss_pred HHHhcCCCCcEEEEEECChHh--h---hHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99987 56677776654332 2 56778898 8999999999999999999998753 34677888
Q ss_pred HHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706 373 AALIEKETTEKQRREMNGGLVDPMLVNAREN 403 (438)
Q Consensus 373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~ 403 (438)
..++... .|+.|.+.++++++...
T Consensus 203 ~~IA~~S-------~GdLRdALnLLDQaIay 226 (702)
T PRK14960 203 WQIAESA-------QGSLRDALSLTDQAIAY 226 (702)
T ss_pred HHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence 8888765 68889999998887643
No 94
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.77 E-value=5.1e-19 Score=149.17 Aligned_cols=129 Identities=22% Similarity=0.218 Sum_probs=104.7
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCC---CCCcccccccCCCChHHHHHHHcCCH---HHHHHHHHCCCCccccc-CCC
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPG---NDKVELEAQNMYGETPLHMAAKNGCN---EAAKLLLAHGAFIEAKA-NNG 74 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~---~~~~~~~~~d~~g~t~L~~A~~~g~~---~~v~~Ll~~g~~~~~~~-~~g 74 (438)
..|.||||+||..|+.. .++..... ..+..++..|..|+||||+|+..|+. +++++|++.|++++.++ ..|
T Consensus 15 ~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g 92 (154)
T PHA02736 15 IEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFG 92 (154)
T ss_pred CCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCC
Confidence 47999999999999843 33221100 01223556788999999999999986 46899999999999998 599
Q ss_pred CcHHHHHhhcccccCcHHHHHHHHh-CCCCCcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706 75 MTPLHLSVWYSIRSEDYATVKTLLE-YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137 (438)
Q Consensus 75 ~t~L~~A~~~~~~~~~~~~~~~Ll~-~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~ 137 (438)
+||||+|+ ..++.+++++|+. .|++++.+|..|.||| +.|+..+..+++++|+..+++
T Consensus 93 ~T~Lh~A~----~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL-~~A~~~~~~~i~~~Ll~~ga~ 151 (154)
T PHA02736 93 NTPLHIAV----YTQNYELATWLCNQPGVNMEILNYAFKTPY-YVACERHDAKMMNILRAKGAQ 151 (154)
T ss_pred CcHHHHHH----HhCCHHHHHHHHhCCCCCCccccCCCCCHH-HHHHHcCCHHHHHHHHHcCCC
Confidence 99999999 7899999999997 4999999999999999 555567788999999887754
No 95
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=8.4e-18 Score=165.58 Aligned_cols=187 Identities=17% Similarity=0.240 Sum_probs=133.7
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCc-eEEecCCCCCHHHHHHHHHHHHHHcCC-----cCCC
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGI-----LPTD 232 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~-----~~~~ 232 (438)
+.|++++|++.+++.|.+.+.. ....| +||+||+|||||++|+.+++.++..+. ....
T Consensus 13 qtFddVIGQe~vv~~L~~al~~----------------gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~ 76 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQ----------------QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQ 76 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHh----------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCC
Confidence 4799999999999998887441 22334 699999999999999999999975211 0011
Q ss_pred -----------------CEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHH
Q 013706 233 -----------------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIE 288 (438)
Q Consensus 233 -----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~ 288 (438)
.+++++.++- ..-..++++++.. +..|+||||+|.|.. .
T Consensus 77 PCG~C~sC~~I~aG~hpDviEIdAas~------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~-----------~ 139 (700)
T PRK12323 77 PCGQCRACTEIDAGRFVDYIEMDAASN------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN-----------H 139 (700)
T ss_pred CCcccHHHHHHHcCCCCcceEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH-----------H
Confidence 2333333211 1223455555442 347999999999976 4
Q ss_pred HHHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhcccccccccccccccc
Q 013706 289 ALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSS 366 (438)
Q Consensus 289 ~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~ 366 (438)
..|.||+.||+ ++++||++|+... .+ .|.+++|+ ..+.|..++.+++.+.+++.+.++. ..
T Consensus 140 AaNALLKTLEEPP~~v~FILaTtep~--kL---lpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Eg-----------i~ 202 (700)
T PRK12323 140 AFNAMLKTLEEPPEHVKFILATTDPQ--KI---PVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEG-----------IA 202 (700)
T ss_pred HHHHHHHhhccCCCCceEEEEeCChH--hh---hhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcC-----------CC
Confidence 55999999998 6677777765433 23 68899998 9999999999999999999887642 33
Q ss_pred ccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHH
Q 013706 367 CSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 402 (438)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~ 402 (438)
++++++..+.... .|+.|+..++++++..
T Consensus 203 ~d~eAL~~IA~~A-------~Gs~RdALsLLdQaia 231 (700)
T PRK12323 203 HEVNALRLLAQAA-------QGSMRDALSLTDQAIA 231 (700)
T ss_pred CCHHHHHHHHHHc-------CCCHHHHHHHHHHHHH
Confidence 5667777666654 6778888888887664
No 96
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.77 E-value=2.5e-18 Score=180.83 Aligned_cols=172 Identities=22% Similarity=0.264 Sum_probs=138.4
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHc---CCcCCCCEEE
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV---GILPTDRVTE 236 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~---~~~~~~~~~~ 236 (438)
.++.++|.+...+++.+++. .....+++|+||||||||++|+.+|..+... .......++.
T Consensus 177 ~~~~~igr~~ei~~~~~~L~----------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~ 240 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILG----------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT 240 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHc----------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 47889999988888877632 2356799999999999999999999988532 2233457888
Q ss_pred eeccccc--ccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCCh
Q 013706 237 VQRTDLV--GEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE 311 (438)
Q Consensus 237 ~~~~~~~--~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~ 311 (438)
++.+.++ .+|.|+.+.+++.+|+++. +.||||||+|.+...++..++ ..+.+.|...+..+.+.+|++||.+
T Consensus 241 l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~---~~~a~lLkp~l~rg~l~~IgaTt~~ 317 (821)
T CHL00095 241 LDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGA---IDAANILKPALARGELQCIGATTLD 317 (821)
T ss_pred eeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc---ccHHHHhHHHHhCCCcEEEEeCCHH
Confidence 8888776 4688999999999998653 479999999999876543222 1455777888899999999999999
Q ss_pred hHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhc
Q 013706 312 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNN 351 (438)
Q Consensus 312 ~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~ 351 (438)
.+...+..+|++.+|| ..|.++.|+.++...|++.....
T Consensus 318 ey~~~ie~D~aL~rRf-~~I~v~ep~~~e~~aILr~l~~~ 356 (821)
T CHL00095 318 EYRKHIEKDPALERRF-QPVYVGEPSVEETIEILFGLRSR 356 (821)
T ss_pred HHHHHHhcCHHHHhcc-eEEecCCCCHHHHHHHHHHHHHH
Confidence 9988778899999999 56899999999999999876554
No 97
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.77 E-value=2.3e-18 Score=170.34 Aligned_cols=120 Identities=33% Similarity=0.429 Sum_probs=106.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
.|.||||+||..|+.++|++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus 123 ~g~T~Lh~A~~~~~~~~v~~Ll~----~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~ 198 (434)
T PHA02874 123 ELKTFLHYAIKKGDLESIKMLFE----YGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAA 198 (434)
T ss_pred CCccHHHHHHHCCCHHHHHHHHh----CCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence 68999999999999999999999 68899999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHH
Q 013706 83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 132 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~ 132 (438)
..|+.+++++|++.|++++..+..|.||| |.|+..+. ..+.+|+
T Consensus 199 ----~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL-~~A~~~~~-~~i~~Ll 242 (434)
T PHA02874 199 ----EYGDYACIKLLIDHGNHIMNKCKNGFTPL-HNAIIHNR-SAIELLI 242 (434)
T ss_pred ----HcCCHHHHHHHHhCCCCCcCCCCCCCCHH-HHHHHCCh-HHHHHHH
Confidence 88999999999999999988888888888 44443444 3444444
No 98
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.77 E-value=1.6e-18 Score=173.30 Aligned_cols=208 Identities=17% Similarity=0.224 Sum_probs=152.4
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706 158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 237 (438)
Q Consensus 158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 237 (438)
...|++++|.+...+++.+.++.+ +....+++|+|++||||+++|++++... .....+|+.+
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~--------------A~~~~pvlI~GE~GtGK~~lA~aiH~~s----~r~~~pfv~i 261 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKL--------------AMLDAPLLITGDTGTGKDLLAYACHLRS----PRGKKPFLAL 261 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCccHHHHHHHHHHhC----CCCCCCeEEe
Confidence 357899999998777777665543 2356789999999999999999998743 3445699999
Q ss_pred ecccccc-----cccccch-------HHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-----
Q 013706 238 QRTDLVG-----EFVGHTG-------PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG----- 300 (438)
Q Consensus 238 ~~~~~~~-----~~~g~~~-------~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~----- 300 (438)
+|+.+.. ..+|+.. ......|+.|.+|+||||||+.|.+..| ..|+..++++
T Consensus 262 nca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q-----------~~Ll~~l~~~~~~~~ 330 (520)
T PRK10820 262 NCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQ-----------AKLLRFLNDGTFRRV 330 (520)
T ss_pred ccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHH-----------HHHHHHHhcCCcccC
Confidence 9987543 3455432 1123468889999999999999987555 7788887653
Q ss_pred --------CEEEEEecCChhHHHHh--hhCcCccCCC-CcceeCCCCCH--HHHHHHHHHHHhccccccccccccccccc
Q 013706 301 --------KVVVIFAGYSEPMKRVI--ASNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSC 367 (438)
Q Consensus 301 --------~v~vi~~~~~~~~~~~~--~~~p~l~~R~-~~~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~~~~~~ 367 (438)
++.+|++|+.+..+.+- .-.+.|..|+ ...|.+|++.. +++..++..++.+...+ +|.. .+.+
T Consensus 331 g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~---~g~~-~~~l 406 (520)
T PRK10820 331 GEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADE---QGVP-RPKL 406 (520)
T ss_pred CCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHH---cCCC-CCCc
Confidence 35788877666543321 0124566676 56788888875 68888888888875431 1211 2468
Q ss_pred cHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 368 SMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
+++++..+..+.| |||.|+|++++++|....
T Consensus 407 s~~a~~~L~~y~W------PGNvreL~nvl~~a~~~~ 437 (520)
T PRK10820 407 AADLNTVLTRYGW------PGNVRQLKNAIYRALTQL 437 (520)
T ss_pred CHHHHHHHhcCCC------CCHHHHHHHHHHHHHHhC
Confidence 9999999999999 999999999999998754
No 99
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.77 E-value=3.2e-18 Score=173.52 Aligned_cols=222 Identities=21% Similarity=0.276 Sum_probs=147.6
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCC---cCCCCEE
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVT 235 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~---~~~~~~~ 235 (438)
..|++++|++...+.+.+.+. ...+.+++|+||||||||++|+++++....... ....+|+
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia----------------~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv 214 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVA----------------SPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFV 214 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHh----------------cCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeE
Confidence 468889999987776654321 234668999999999999999999987643221 1245788
Q ss_pred Eeeccccc-------ccccccchHH-----------------HHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHH
Q 013706 236 EVQRTDLV-------GEFVGHTGPK-----------------TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALE 291 (438)
Q Consensus 236 ~~~~~~~~-------~~~~g~~~~~-----------------~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~ 291 (438)
.+++..+. ..++|..... ....+..+.+|+|||||++.|.+..| .
T Consensus 215 ~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q-----------~ 283 (615)
T TIGR02903 215 EVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQ-----------N 283 (615)
T ss_pred EEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHH-----------H
Confidence 88876541 1233322111 11234567789999999999986444 5
Q ss_pred HHHhhccCC------------------------------CEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHH
Q 013706 292 EIMSVMDGG------------------------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEEL 341 (438)
Q Consensus 292 ~ll~~~~~~------------------------------~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~ 341 (438)
.|+..++++ .+++|++|+.++. .+ +|+|++|| ..+.|++++.+++
T Consensus 284 ~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~-~l---~~aLrSR~-~~i~~~pls~edi 358 (615)
T TIGR02903 284 KLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPE-EI---NPALRSRC-AEVFFEPLTPEDI 358 (615)
T ss_pred HHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEecccccc-cc---CHHHHhce-eEEEeCCCCHHHH
Confidence 566655432 2566766665443 23 78999999 5789999999999
Q ss_pred HHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhc
Q 013706 342 AKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTI 421 (438)
Q Consensus 342 ~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i 421 (438)
.+|+++.+.+.. ..++++++..+..+.| ++|...++++.+...+..+... ..+......|
T Consensus 359 ~~Il~~~a~~~~-----------v~ls~eal~~L~~ys~--------~gRraln~L~~~~~~~~~~~~~-~~~~~~~~~I 418 (615)
T TIGR02903 359 ALIVLNAAEKIN-----------VHLAAGVEELIARYTI--------EGRKAVNILADVYGYALYRAAE-AGKENDKVTI 418 (615)
T ss_pred HHHHHHHHHHcC-----------CCCCHHHHHHHHHCCC--------cHHHHHHHHHHHHHHHHHHHHH-hccCCCCeeE
Confidence 999999887532 2356777777777655 2466667887776654433220 0011223579
Q ss_pred cHHHHHHHHHH
Q 013706 422 TLEDLEAGLKL 432 (438)
Q Consensus 422 ~~~d~~~a~~~ 432 (438)
+.+|+++++..
T Consensus 419 ~~edv~~~l~~ 429 (615)
T TIGR02903 419 TQDDVYEVIQI 429 (615)
T ss_pred CHHHHHHHhCC
Confidence 99999998764
No 100
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=2e-17 Score=162.35 Aligned_cols=190 Identities=18% Similarity=0.259 Sum_probs=138.0
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC-------
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT------- 231 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~------- 231 (438)
..|++++|++.+.+.+...+.. .+.+.++||+||||||||++|+++|+.+........
T Consensus 18 ~~f~dliGq~~vv~~L~~ai~~---------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C 82 (507)
T PRK06645 18 SNFAELQGQEVLVKVLSYTILN---------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC 82 (507)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC
Confidence 5799999999999888765321 234568999999999999999999999965321111
Q ss_pred --------------CCEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHH
Q 013706 232 --------------DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEAL 290 (438)
Q Consensus 232 --------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~ 290 (438)
..++++++++ ......++.+++.+ +..|+||||+|.+.. ..+
T Consensus 83 ~~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-----------~a~ 145 (507)
T PRK06645 83 EQCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-----------GAF 145 (507)
T ss_pred CCChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-----------HHH
Confidence 1223333221 11234566666655 347999999999965 455
Q ss_pred HHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhcccccccccccccccccc
Q 013706 291 EEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCS 368 (438)
Q Consensus 291 ~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~ 368 (438)
+.|+..+++ ..+++|++++... .+ .+++++|+ ..++|.+++.+++..+++..++++. ..++
T Consensus 146 naLLk~LEepp~~~vfI~aTte~~--kI---~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~eg-----------i~ie 208 (507)
T PRK06645 146 NALLKTLEEPPPHIIFIFATTEVQ--KI---PATIISRC-QRYDLRRLSFEEIFKLLEYITKQEN-----------LKTD 208 (507)
T ss_pred HHHHHHHhhcCCCEEEEEEeCChH--Hh---hHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcC-----------CCCC
Confidence 889999987 5667777654332 33 67889998 7899999999999999999998753 3457
Q ss_pred HHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 369 MDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
++++..++... .|+.|.+.+.++++...+
T Consensus 209 ~eAL~~Ia~~s-------~GslR~al~~Ldkai~~~ 237 (507)
T PRK06645 209 IEALRIIAYKS-------EGSARDAVSILDQAASMS 237 (507)
T ss_pred HHHHHHHHHHc-------CCCHHHHHHHHHHHHHhh
Confidence 78888887754 688899999999987654
No 101
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.77 E-value=1.2e-18 Score=179.69 Aligned_cols=205 Identities=16% Similarity=0.183 Sum_probs=151.1
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 239 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 239 (438)
.|++++|.+...+.+.+.+..+ +....+|||+|++||||+++|++|+... .....+|+.++|
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~--------------a~~~~pvli~Ge~GtGK~~~A~~ih~~s----~r~~~pfv~vnc 384 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQA--------------AKSSFPVLLCGEEGVGKALLAQAIHNES----ERAAGPYIAVNC 384 (638)
T ss_pred cccceEECCHHHHHHHHHHHHH--------------hCcCCCEEEECCCCcCHHHHHHHHHHhC----CccCCCeEEEEC
Confidence 5888999988777777665544 2456789999999999999999999854 334569999999
Q ss_pred cccc-----ccccccc----hHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC----------
Q 013706 240 TDLV-----GEFVGHT----GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG---------- 300 (438)
Q Consensus 240 ~~~~-----~~~~g~~----~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~---------- 300 (438)
+.+. +.++|+. .......|+.|.+|+||||||+.|....| ..|++.++++
T Consensus 385 ~~~~~~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q-----------~~Ll~~l~~~~~~~~~~~~~ 453 (638)
T PRK11388 385 QLYPDEALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQ-----------SALLQVLKTGVITRLDSRRL 453 (638)
T ss_pred CCCChHHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHH-----------HHHHHHHhcCcEEeCCCCce
Confidence 8653 4466643 11112357788999999999999987555 7888888764
Q ss_pred ---CEEEEEecCChhHHHHhh--hCcCccCCC-CcceeCCCCCH--HHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706 301 ---KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 372 (438)
Q Consensus 301 ---~v~vi~~~~~~~~~~~~~--~~p~l~~R~-~~~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~ 372 (438)
++.+|++|+.+....+.. -.+.|..|+ ...|.+|++.. +++..++..++.+... .+.....++++++
T Consensus 454 ~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~-----~~~~~~~~s~~a~ 528 (638)
T PRK11388 454 IPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEK-----RFSTRLKIDDDAL 528 (638)
T ss_pred EEeeEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHH-----HhCCCCCcCHHHH
Confidence 356888877665433211 123444566 66788888875 7899999999987642 1222346899999
Q ss_pred HHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 373 AALIEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
..+..+.| |||.|+|+++++++...+
T Consensus 529 ~~L~~y~W------PGNvreL~~~l~~~~~~~ 554 (638)
T PRK11388 529 ARLVSYRW------PGNDFELRSVIENLALSS 554 (638)
T ss_pred HHHHcCCC------CChHHHHHHHHHHHHHhC
Confidence 99999999 999999999999988654
No 102
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.77 E-value=4.9e-18 Score=169.83 Aligned_cols=207 Identities=20% Similarity=0.223 Sum_probs=154.0
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 239 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 239 (438)
...+++|.+...+.+.+.+..+ +....+|||+|++||||+++|++|+... .....+|+.++|
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~--------------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s----~r~~~p~v~v~c 246 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV--------------AASDLNVLILGETGVGKELVARAIHAAS----PRADKPLVYLNC 246 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH--------------hCCCCcEEEECCCCccHHHHHHHHHHhC----CcCCCCeEEEEc
Confidence 4567999999888888776654 3567899999999999999999999854 334569999999
Q ss_pred cccc-----ccccccchH-------HHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-------
Q 013706 240 TDLV-----GEFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------- 300 (438)
Q Consensus 240 ~~~~-----~~~~g~~~~-------~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------- 300 (438)
+.+. +.++|+... .....|+.|.+|+|||||||.|.+..| ..|+..++++
T Consensus 247 ~~~~~~~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q-----------~~Ll~~l~~~~~~~~g~ 315 (509)
T PRK05022 247 AALPESLAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQ-----------AKLLRVLQYGEIQRVGS 315 (509)
T ss_pred ccCChHHHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHH-----------HHHHHHHhcCCEeeCCC
Confidence 8753 235564221 122357889999999999999997544 7888888653
Q ss_pred ------CEEEEEecCChhHHHHhh--hCcCccCCC-CcceeCCCCCH--HHHHHHHHHHHhccccccccccccccccccH
Q 013706 301 ------KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSM 369 (438)
Q Consensus 301 ------~v~vi~~~~~~~~~~~~~--~~p~l~~R~-~~~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~ 369 (438)
++.+|++|+.+....+.. ..+.|..|+ ...|.+|++.. +++..++.+++.+...+ ++. -...+++
T Consensus 316 ~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~---~~~-~~~~~s~ 391 (509)
T PRK05022 316 DRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRAR---LGL-RSLRLSP 391 (509)
T ss_pred CcceecceEEEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHH---cCC-CCCCCCH
Confidence 457888877665443211 124455576 45688888874 78999999999876431 121 2246899
Q ss_pred HHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhh
Q 013706 370 DAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD 405 (438)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~ 405 (438)
+++..+..+.| |||.|+|++++++|+..+.
T Consensus 392 ~a~~~L~~y~W------PGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 392 AAQAALLAYDW------PGNVRELEHVISRAALLAR 421 (509)
T ss_pred HHHHHHHhCCC------CCcHHHHHHHHHHHHHhcC
Confidence 99999999999 9999999999999987654
No 103
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=9.2e-18 Score=170.49 Aligned_cols=187 Identities=16% Similarity=0.204 Sum_probs=133.0
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCc-eEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCE---
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGILPTDRV--- 234 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~--- 234 (438)
..|++++|++.+++.|+..+. .....| +||+||||||||++||++|+.++........++
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~----------------~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C 76 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALT----------------QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVC 76 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHH----------------hCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCc
Confidence 579999999999998887643 123455 589999999999999999999875321111111
Q ss_pred --------------EEeecccccccccccchHHHHHHHHH-------ccCcEEEEeCcccccCCCCCCCchhHHHHHHHH
Q 013706 235 --------------TEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEI 293 (438)
Q Consensus 235 --------------~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~l 293 (438)
+++++++- .....++.+++. .+..|+||||+|.|.. ..++.|
T Consensus 77 ~sC~~i~~g~~~DviEidAas~------~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~-----------eAqNAL 139 (944)
T PRK14949 77 SSCVEIAQGRFVDLIEVDAASR------TKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR-----------SSFNAL 139 (944)
T ss_pred hHHHHHhcCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH-----------HHHHHH
Confidence 22222210 111234444432 2347999999999976 456999
Q ss_pred HhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHH
Q 013706 294 MSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA 371 (438)
Q Consensus 294 l~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 371 (438)
|+.|++ +.+++|++|+.... + .+.+++|+ .+++|.+++.+++...+++.+..+. ..+++++
T Consensus 140 LKtLEEPP~~vrFILaTTe~~k--L---l~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~Eg-----------I~~edeA 202 (944)
T PRK14949 140 LKTLEEPPEHVKFLLATTDPQK--L---PVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQ-----------LPFEAEA 202 (944)
T ss_pred HHHHhccCCCeEEEEECCCchh--c---hHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHH
Confidence 999997 66777777654432 2 57789998 8999999999999999999887642 3457778
Q ss_pred HHHHHHHHhhHhhhccccccchHHHHHHHHH
Q 013706 372 IAALIEKETTEKQRREMNGGLVDPMLVNARE 402 (438)
Q Consensus 372 ~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~ 402 (438)
+..++... .|+.|.+.++++++..
T Consensus 203 L~lIA~~S-------~Gd~R~ALnLLdQala 226 (944)
T PRK14949 203 LTLLAKAA-------NGSMRDALSLTDQAIA 226 (944)
T ss_pred HHHHHHHc-------CCCHHHHHHHHHHHHH
Confidence 88777654 6778889999887774
No 104
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.77 E-value=4.4e-18 Score=178.66 Aligned_cols=173 Identities=20% Similarity=0.263 Sum_probs=134.8
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHc---CCcCCCCEE
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV---GILPTDRVT 235 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~---~~~~~~~~~ 235 (438)
..++.++|.+....++.+++. .....+++|+||||||||++|+.+|..+... ..+....++
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~----------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~ 238 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQ----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL 238 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHh----------------cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEE
Confidence 357889999986555555422 2355789999999999999999999987421 112345777
Q ss_pred Eeeccccc--ccccccchHHHHHHHHHc----cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecC
Q 013706 236 EVQRTDLV--GEFVGHTGPKTRRRIKEA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY 309 (438)
Q Consensus 236 ~~~~~~~~--~~~~g~~~~~~~~~~~~a----~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~ 309 (438)
.++...++ .+|.|+.+..++.+|++. .+.||||||+|.+...+.+++ +..+.+.|...+..+.+.+|++||
T Consensus 239 ~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~---~~d~~~~lkp~l~~g~l~~IgaTt 315 (857)
T PRK10865 239 ALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG---AMDAGNMLKPALARGELHCVGATT 315 (857)
T ss_pred EEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCcc---chhHHHHhcchhhcCCCeEEEcCC
Confidence 77777765 458899999999998763 347999999999987654222 124557788899999999999999
Q ss_pred ChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhc
Q 013706 310 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNN 351 (438)
Q Consensus 310 ~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~ 351 (438)
.+++...+..||++.|||. .|.++.|+.+++..|++....+
T Consensus 316 ~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 316 LDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred CHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhh
Confidence 9999877788999999995 6889999999999999876554
No 105
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=1.6e-17 Score=164.38 Aligned_cols=189 Identities=15% Similarity=0.180 Sum_probs=135.3
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC------
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------ 232 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~------ 232 (438)
..|++++|++.+++.|...+..- ..+..+||+||||||||++|+++|+.++........
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~---------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 77 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQ---------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCE 77 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhC---------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCH
Confidence 47999999999999988875311 123347999999999999999999999753222111
Q ss_pred -----------CEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706 233 -----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 294 (438)
Q Consensus 233 -----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll 294 (438)
.++++++++ ...-..++.+++.. +..|+||||+|.|.+ ...|.|+
T Consensus 78 ~C~~i~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~-----------~a~naLL 140 (509)
T PRK14958 78 NCREIDEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG-----------HSFNALL 140 (509)
T ss_pred HHHHHhcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH-----------HHHHHHH
Confidence 144444432 11223455555543 337999999999986 3458999
Q ss_pred hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706 295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 372 (438)
Q Consensus 295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~ 372 (438)
..|++ ..+++|++|+.. ..+ .+.+++|+ ..++|.+++.+++...++..+.++. ..++++++
T Consensus 141 k~LEepp~~~~fIlattd~--~kl---~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~eg-----------i~~~~~al 203 (509)
T PRK14958 141 KTLEEPPSHVKFILATTDH--HKL---PVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEEN-----------VEFENAAL 203 (509)
T ss_pred HHHhccCCCeEEEEEECCh--Hhc---hHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99987 467677766432 223 55689998 8999999999999999999988753 33567788
Q ss_pred HHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706 373 AALIEKETTEKQRREMNGGLVDPMLVNAREN 403 (438)
Q Consensus 373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~ 403 (438)
..++... .|+.|.+.++++++...
T Consensus 204 ~~ia~~s-------~GslR~al~lLdq~ia~ 227 (509)
T PRK14958 204 DLLARAA-------NGSVRDALSLLDQSIAY 227 (509)
T ss_pred HHHHHHc-------CCcHHHHHHHHHHHHhc
Confidence 8777764 57788899999887543
No 106
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.77 E-value=2.6e-18 Score=169.04 Aligned_cols=128 Identities=27% Similarity=0.344 Sum_probs=112.3
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcc-cccCCCCcHHHHH
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIE-AKANNGMTPLHLS 81 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A 81 (438)
.|.||||+|+..|+.+++++|++ .|++++..+..+.||||+|+..|+.+++++|++.|++++ ..+..|.||||+|
T Consensus 34 ~g~tpL~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A 109 (413)
T PHA02875 34 DGISPIKLAMKFRDSEAIKLLMK----HGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLA 109 (413)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh----CCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHH
Confidence 68999999999999999999998 677888888889999999999999999999999998764 4567899999999
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHH
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 139 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~ 139 (438)
+ ..++.+++++|+++|++++..+..|.||| |.|+..+..+++++|+..+++..
T Consensus 110 ~----~~~~~~iv~~Ll~~gad~~~~~~~g~tpL-h~A~~~~~~~~v~~Ll~~g~~~~ 162 (413)
T PHA02875 110 T----ILKKLDIMKLLIARGADPDIPNTDKFSPL-HLAVMMGDIKGIELLIDHKACLD 162 (413)
T ss_pred H----HhCCHHHHHHHHhCCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHhcCCCCC
Confidence 9 78899999999999999999999999999 55666778889999988877543
No 107
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=1.8e-17 Score=161.37 Aligned_cols=190 Identities=17% Similarity=0.190 Sum_probs=139.2
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCc---------
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL--------- 229 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~--------- 229 (438)
+.|++++|++.+.+.+...+.. .+.+.++||+||||||||++|+.+|+.++.....
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~---------------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTL---------------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 5799999999999988865331 1245579999999999999999999988643211
Q ss_pred --------CCCCEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706 230 --------PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 294 (438)
Q Consensus 230 --------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll 294 (438)
....++++++++- ..-..++.+++.+ +..|+||||+|.|.. ..+|.|+
T Consensus 75 ~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-----------~A~NaLL 137 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-----------SAFNALL 137 (491)
T ss_pred HHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-----------HHHHHHH
Confidence 1223455555421 1223456665544 347999999999975 4569999
Q ss_pred hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706 295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 372 (438)
Q Consensus 295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~ 372 (438)
..|++ ..+++|++++.. ..+ .+.+++|+ ..+.|.+++.+++.+.+...+.++. ..++++++
T Consensus 138 K~LEePp~~v~fIlatte~--~Kl---~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Eg-----------i~i~~eAL 200 (491)
T PRK14964 138 KTLEEPAPHVKFILATTEV--KKI---PVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKEN-----------IEHDEESL 200 (491)
T ss_pred HHHhCCCCCeEEEEEeCCh--HHH---HHHHHHhh-eeeecccccHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99997 567777766432 233 56788898 8899999999999999999988753 34677888
Q ss_pred HHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 373 AALIEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
..++... .|+.|.+.+.++++....
T Consensus 201 ~lIa~~s-------~GslR~alslLdqli~y~ 225 (491)
T PRK14964 201 KLIAENS-------SGSMRNALFLLEQAAIYS 225 (491)
T ss_pred HHHHHHc-------CCCHHHHHHHHHHHHHhc
Confidence 8888765 578888999998887653
No 108
>PLN03025 replication factor C subunit; Provisional
Probab=99.76 E-value=1.5e-17 Score=156.93 Aligned_cols=183 Identities=20% Similarity=0.244 Sum_probs=128.1
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..+++++|++.+.+.|+.++. ....+|+||+||||||||++|+++|+++...+. ...+++++
T Consensus 10 ~~l~~~~g~~~~~~~L~~~~~----------------~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~--~~~~~eln 71 (319)
T PLN03025 10 TKLDDIVGNEDAVSRLQVIAR----------------DGNMPNLILSGPPGTGKTTSILALAHELLGPNY--KEAVLELN 71 (319)
T ss_pred CCHHHhcCcHHHHHHHHHHHh----------------cCCCceEEEECCCCCCHHHHHHHHHHHHhcccC--ccceeeec
Confidence 468999999999888887633 124468999999999999999999999854321 23466777
Q ss_pred cccccccccccchHHHHHHHH---H-------ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC---CCEEEE
Q 013706 239 RTDLVGEFVGHTGPKTRRRIK---E-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVI 305 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~---~-------a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~---~~v~vi 305 (438)
+++..+. ..++..++ + ....|++|||+|.+....| +.|+..|+. ...+++
T Consensus 72 ~sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq-----------~aL~~~lE~~~~~t~~il 134 (319)
T PLN03025 72 ASDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQ-----------QALRRTMEIYSNTTRFAL 134 (319)
T ss_pred ccccccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHH-----------HHHHHHHhcccCCceEEE
Confidence 7654221 12222221 1 1247999999999986444 667766664 333444
Q ss_pred EecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706 306 FAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 385 (438)
Q Consensus 306 ~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (438)
.++.... + .|++++|+ ..++|++|+.+++...++..++++. ..++++++..++...
T Consensus 135 ~~n~~~~---i---~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~eg-----------i~i~~~~l~~i~~~~------ 190 (319)
T PLN03025 135 ACNTSSK---I---IEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEK-----------VPYVPEGLEAIIFTA------ 190 (319)
T ss_pred EeCCccc---c---chhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHc------
Confidence 4433332 2 67899998 7899999999999999999887753 345678888888765
Q ss_pred ccccccchHHHHHHHH
Q 013706 386 REMNGGLVDPMLVNAR 401 (438)
Q Consensus 386 ~~~n~~~l~~~~~~a~ 401 (438)
.|+.|.+.+.++.+.
T Consensus 191 -~gDlR~aln~Lq~~~ 205 (319)
T PLN03025 191 -DGDMRQALNNLQATH 205 (319)
T ss_pred -CCCHHHHHHHHHHHH
Confidence 577788888887443
No 109
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.8e-17 Score=166.64 Aligned_cols=223 Identities=21% Similarity=0.339 Sum_probs=162.5
Q ss_pred HHHHHHHH-hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC
Q 013706 154 MDELENEL-SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD 232 (438)
Q Consensus 154 ~~~~~~~l-~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~ 232 (438)
+-.+...+ ..++|++.+...+.+.+ ++...|...+.+|...+||.||+|+|||.+|+++|..++- ...
T Consensus 482 ll~le~~L~~rViGQd~AV~avs~aI-------rraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg----~e~ 550 (786)
T COG0542 482 LLNLERRLKKRVIGQDEAVEAVSDAI-------RRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFG----DEQ 550 (786)
T ss_pred HHHHHHHHhcceeChHHHHHHHHHHH-------HHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcC----CCc
Confidence 33344444 45889998877777654 3445666666667778999999999999999999999862 122
Q ss_pred CEEEeeccccc---------cc---cccc-chHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC
Q 013706 233 RVTEVQRTDLV---------GE---FVGH-TGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG 299 (438)
Q Consensus 233 ~~~~~~~~~~~---------~~---~~g~-~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~ 299 (438)
.++.++-|++. +. |+|+ .+..+...++.-..+||++|||++.+| +++|.||+.||+
T Consensus 551 aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHp-----------dV~nilLQVlDd 619 (786)
T COG0542 551 ALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHP-----------DVFNLLLQVLDD 619 (786)
T ss_pred cceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCH-----------HHHHHHHHHhcC
Confidence 66677666533 22 6775 344566677777789999999999998 788999999997
Q ss_pred C-------------CEEEEEecCChh--HHHHh---------------------hhCcCccCCCCcceeCCCCCHHHHHH
Q 013706 300 G-------------KVVVIFAGYSEP--MKRVI---------------------ASNEGFCRRVTKFFHFNDFNSEELAK 343 (438)
Q Consensus 300 ~-------------~v~vi~~~~~~~--~~~~~---------------------~~~p~l~~R~~~~i~~~~~~~~e~~~ 343 (438)
| +.++|+|+|--. +.... .-.|+++.|++.+|.|.+++.+++.+
T Consensus 620 GrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~ 699 (786)
T COG0542 620 GRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLER 699 (786)
T ss_pred CeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHH
Confidence 3 347777764111 11000 00189999999999999999999999
Q ss_pred HHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 344 ILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 344 il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
|+..++.+...+... ..+...+++++...+....+. ....+|.++.++++-+...
T Consensus 700 Iv~~~L~~l~~~L~~--~~i~l~~s~~a~~~l~~~gyd----~~~GARpL~R~Iq~~i~~~ 754 (786)
T COG0542 700 IVDLQLNRLAKRLAE--RGITLELSDEAKDFLAEKGYD----PEYGARPLRRAIQQEIEDP 754 (786)
T ss_pred HHHHHHHHHHHHHHh--CCceEEECHHHHHHHHHhccC----CCcCchHHHHHHHHHHHHH
Confidence 999999988766553 345566789999999987762 2345788999988777654
No 110
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.76 E-value=2e-18 Score=169.06 Aligned_cols=129 Identities=31% Similarity=0.399 Sum_probs=118.8
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHH-CC-CCcccccCCCCcHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA-HG-AFIEAKANNGMTPLH 79 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g-~~~~~~~~~g~t~L~ 79 (438)
.+|.||||+||..|++++|+.|+. .|++++.++.++.||||.||..|+.++++-|++ .| ..+|..|..|.||||
T Consensus 271 ~dg~tpLH~a~r~G~~~svd~Ll~----~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLH 346 (929)
T KOG0510|consen 271 NDGCTPLHYAARQGGPESVDNLLG----FGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLH 346 (929)
T ss_pred ccCCchHHHHHHcCChhHHHHHHH----cCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchh
Confidence 489999999999999999999999 799999999999999999999999999999998 55 457889999999999
Q ss_pred HHhhcccccCcHHHHHHHHhCCCCCc---ccCCCCCccccccccCCCchhHHHHHHhccchHH
Q 013706 80 LSVWYSIRSEDYATVKTLLEYNADCS---AKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 139 (438)
Q Consensus 80 ~A~~~~~~~~~~~~~~~Ll~~ga~~~---~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~ 139 (438)
.|+ .+||..++++|++.|++.. -.|.+|.||| |.|+..++..+++.|+.+|++..
T Consensus 347 laa----~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaL-H~Aa~~g~~~av~~Li~~Ga~I~ 404 (929)
T KOG0510|consen 347 LAA----KSGHDRVVQLLLNKGALFLNMSEADSDGNTAL-HLAAKYGNTSAVQKLISHGADIG 404 (929)
T ss_pred hhh----hcCHHHHHHHHHhcChhhhcccccccCCchhh-hHHHHhccHHHHHHHHHcCCcee
Confidence 999 9999999999999999987 4599999999 67777889999999999998763
No 111
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.76 E-value=2e-18 Score=175.53 Aligned_cols=133 Identities=25% Similarity=0.269 Sum_probs=84.4
Q ss_pred CCCcHHHHHHH--cCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCC--HHHHHHHHHCCCCcccccCCCCcHH
Q 013706 3 MAQTPLHVSAG--YNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGC--NEAAKLLLAHGAFIEAKANNGMTPL 78 (438)
Q Consensus 3 ~g~tpLh~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~--~~~v~~Ll~~g~~~~~~~~~g~t~L 78 (438)
.|.||||+|+. +++.+++++|++ .|+++|.+|..|+||||+|+..|+ .+++++|+++|+++|.+|..|+|||
T Consensus 176 ~G~TpLH~A~~n~~~~~eIVklLLe----~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPL 251 (764)
T PHA02716 176 TGYGILHAYLGNMYVDIDILEWLCN----NGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPI 251 (764)
T ss_pred CCCcHHHHHHHhccCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 56777776653 345677777776 566777777777777777777664 3667777777777777777777777
Q ss_pred HHHhh---------------------------------cccccCcHHHHHHHHhCCCCCcccCCCCCcccccccc-CCCc
Q 013706 79 HLSVW---------------------------------YSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN-GPGS 124 (438)
Q Consensus 79 ~~A~~---------------------------------~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~-~~~~ 124 (438)
|+|+. .+...|+.++++.|+++|++++.+|.+|+||||+++. ..++
T Consensus 252 h~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~ 331 (764)
T PHA02716 252 MTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNIS 331 (764)
T ss_pred HHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCC
Confidence 65421 0124566677777777777777777777777744332 2345
Q ss_pred hhHHHHHHhccchHH
Q 013706 125 AKLRELLLWHSEEQR 139 (438)
Q Consensus 125 ~~~~~lL~~~~~~~~ 139 (438)
.+++++|+..|++..
T Consensus 332 ~eIVklLLe~GADIN 346 (764)
T PHA02716 332 TDIIKLLHEYGNDLN 346 (764)
T ss_pred chHHHHHHHcCCCCc
Confidence 566666666665543
No 112
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.76 E-value=5.5e-18 Score=167.59 Aligned_cols=133 Identities=27% Similarity=0.387 Sum_probs=117.3
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCC-------------------CCcccccccCCCChHHHHHHHcCCHHHHHHHHHC
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGN-------------------DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH 63 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~-------------------~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 63 (438)
.|.||||.|+..|+.+++++|++++.. .|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus 67 ~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~ 146 (434)
T PHA02874 67 KIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEY 146 (434)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhC
Confidence 577888888888888888888874321 3466888899999999999999999999999999
Q ss_pred CCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706 64 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK 140 (438)
Q Consensus 64 g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~ 140 (438)
|++++.+|..|.||||+|+ ..++.+++++|+++|++++..|..|+||| |.|+..+..+++++|+..+++...
T Consensus 147 gad~n~~d~~g~tpLh~A~----~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL-~~A~~~g~~~iv~~Ll~~g~~i~~ 218 (434)
T PHA02874 147 GADVNIEDDNGCYPIHIAI----KHNFFDIIKLLLEKGAYANVKDNNGESPL-HNAAEYGDYACIKLLIDHGNHIMN 218 (434)
T ss_pred CCCCCCcCCCCCCHHHHHH----HCCcHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHhCCCCCcC
Confidence 9999999999999999999 88999999999999999999999999999 666667889999999988876433
No 113
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=1.8e-17 Score=158.80 Aligned_cols=189 Identities=14% Similarity=0.184 Sum_probs=130.7
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC-----
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR----- 233 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~----- 233 (438)
..|++++|++.+++.+...+.. ...+..+||+||||||||++|+++|+.+.........+
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~---------------~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~ 77 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSL---------------GRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCI 77 (363)
T ss_pred CchhhccChHHHHHHHHHHHHc---------------CCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 5799999999999988876431 11233469999999999999999999886322111111
Q ss_pred ------------EEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706 234 ------------VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 294 (438)
Q Consensus 234 ------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll 294 (438)
++++++++ ......++.+++.. ...|+||||+|.+.. ...+.|+
T Consensus 78 ~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~-----------~a~naLL 140 (363)
T PRK14961 78 ICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR-----------HSFNALL 140 (363)
T ss_pred HHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH-----------HHHHHHH
Confidence 22222211 01123345554432 236999999999864 3458899
Q ss_pred hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706 295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 372 (438)
Q Consensus 295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~ 372 (438)
..+++ ..+.+|++++.. ..+ .+++++|+ ..++|++|+.+++.++++..+++.. ..++++++
T Consensus 141 k~lEe~~~~~~fIl~t~~~--~~l---~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g-----------~~i~~~al 203 (363)
T PRK14961 141 KTLEEPPQHIKFILATTDV--EKI---PKTILSRC-LQFKLKIISEEKIFNFLKYILIKES-----------IDTDEYAL 203 (363)
T ss_pred HHHhcCCCCeEEEEEcCCh--Hhh---hHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99986 556666665432 333 67889998 8899999999999999999887642 33567777
Q ss_pred HHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706 373 AALIEKETTEKQRREMNGGLVDPMLVNAREN 403 (438)
Q Consensus 373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~ 403 (438)
..++... .|+.|.+.+.++++...
T Consensus 204 ~~ia~~s-------~G~~R~al~~l~~~~~~ 227 (363)
T PRK14961 204 KLIAYHA-------HGSMRDALNLLEHAINL 227 (363)
T ss_pred HHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence 7777654 57788888988887643
No 114
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.76 E-value=4.4e-18 Score=156.13 Aligned_cols=119 Identities=25% Similarity=0.272 Sum_probs=101.6
Q ss_pred CCC-cHHHHHHHcCCHHHHHHHhcCCCCCCccccccc----CCCChHHHHHHHcCCHHHHHHHHHCCCCcccc-cCCCCc
Q 013706 3 MAQ-TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN----MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAK-ANNGMT 76 (438)
Q Consensus 3 ~g~-tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d----~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t 76 (438)
.|. ++||.|+..|+.+++++|++ .|+++|.++ ..|.||||+|+..++.+++++|+++|+++|.+ +..|.|
T Consensus 31 ~~~~~lL~~A~~~~~~eivk~LL~----~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~T 106 (300)
T PHA02884 31 ICIANILYSSIKFHYTDIIDAILK----LGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKIT 106 (300)
T ss_pred CCCCHHHHHHHHcCCHHHHHHHHH----CCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCC
Confidence 444 46777777799999999999 788999874 58999999999999999999999999999996 568999
Q ss_pred HHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHH
Q 013706 77 PLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLREL 130 (438)
Q Consensus 77 ~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~l 130 (438)
|||+|+ ..++.+++++|+..|++++.+|..|+||+++++ ..+...+..+
T Consensus 107 pLh~Aa----~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~-~~~~~~~~~~ 155 (300)
T PHA02884 107 PLYISV----LHGCLKCLEILLSYGADINIQTNDMVTPIELAL-MICNNFLAFM 155 (300)
T ss_pred HHHHHH----HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-HhCChhHHHH
Confidence 999999 889999999999999999999999999995444 3344444433
No 115
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.75 E-value=3.3e-18 Score=173.99 Aligned_cols=109 Identities=26% Similarity=0.293 Sum_probs=75.5
Q ss_pred CCCcHHHHHHHcCC--HHHHHHHhcCCCCCCcccccccCCCChHHHHH--------------------------------
Q 013706 3 MAQTPLHVSAGYNK--AEIVKSLLEWPGNDKVELEAQNMYGETPLHMA-------------------------------- 48 (438)
Q Consensus 3 ~g~tpLh~A~~~g~--~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A-------------------------------- 48 (438)
.|+||||+|+..|+ .++|++|++ .|+++|.+|..|+||||+|
T Consensus 211 ~G~TPLH~Aa~~g~~~~eIVklLLe----~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~ 286 (764)
T PHA02716 211 HLITPLHTYLITGNVCASVIKKIIE----LGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILH 286 (764)
T ss_pred CCCCHHHHHHHcCCCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhH
Confidence 57777777777774 477777777 5677777777777777754
Q ss_pred -----HHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccc
Q 013706 49 -----AKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 117 (438)
Q Consensus 49 -----~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~ 117 (438)
+..|+.+++++|++.|++++.+|..|+||||+|+.. ..++.+++++|+++|++++.+|..|+||||+
T Consensus 287 ~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~--~~~~~eIVklLLe~GADIN~kD~~G~TPLH~ 358 (764)
T PHA02716 287 SYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILR--HNISTDIIKLLHEYGNDLNEPDNIGNTVLHT 358 (764)
T ss_pred HHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHH--hCCCchHHHHHHHcCCCCccCCCCCCCHHHH
Confidence 234566777777777777777777777777776521 2345677777777777777777777777743
No 116
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.75 E-value=5.6e-18 Score=170.13 Aligned_cols=131 Identities=31% Similarity=0.421 Sum_probs=110.6
Q ss_pred CCCCcHHHHHHHcC--CHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCC-----
Q 013706 2 QMAQTPLHVSAGYN--KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNG----- 74 (438)
Q Consensus 2 ~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g----- 74 (438)
..|+||||+|+..| +.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|
T Consensus 139 ~~g~t~L~~A~~~~~~~~~iv~~Ll~----~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~ 214 (480)
T PHA03100 139 SDGENLLHLYLESNKIDLKILKLLID----KGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTI 214 (480)
T ss_pred CCCCcHHHHHHHcCCChHHHHHHHHH----CCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHH
Confidence 36889999999998 8999999998 688888888889999999999999999999999999888888888
Q ss_pred -CcHHHHHhhcccccCc--HHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706 75 -MTPLHLSVWYSIRSED--YATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 141 (438)
Q Consensus 75 -~t~L~~A~~~~~~~~~--~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~ 141 (438)
.||||+|+ ..++ .+++++|+++|++++.+|..|.||| |.|+..++.+++++|+..|++....
T Consensus 215 ~~t~l~~a~----~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL-~~A~~~~~~~iv~~Ll~~gad~n~~ 279 (480)
T PHA03100 215 FETPLHIAA----CYNEITLEVVNYLLSYGVPINIKDVYGFTPL-HYAVYNNNPEFVKYLLDLGANPNLV 279 (480)
T ss_pred HHhHHHHHH----HhCcCcHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCCcc
Confidence 88888888 6677 8888999988999888888899998 5555567788888888888765543
No 117
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.75 E-value=1.6e-18 Score=144.55 Aligned_cols=127 Identities=28% Similarity=0.304 Sum_probs=100.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
++++|+.+++...|++.+..+.+ .-+|..|..|.|||+||+..|++++|++|++.|++++...+.-.++|.+|+
T Consensus 128 ~p~s~~slsVhql~L~~~~~~~~------n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt 201 (296)
T KOG0502|consen 128 MPWSPLSLSVHQLHLDVVDLLVN------NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLAT 201 (296)
T ss_pred ccCChhhHHHHHHHHHHHHHHhh------ccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHh
Confidence 57788888888888877777665 247778888888888888888888888888888888888777788888888
Q ss_pred hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706 83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK 140 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~ 140 (438)
+.|..+++++||..+.|+|..|.+|.||| ..|.++++-++++.|+..|++...
T Consensus 202 ----~ggytdiV~lLL~r~vdVNvyDwNGgTpL-lyAvrgnhvkcve~Ll~sGAd~t~ 254 (296)
T KOG0502|consen 202 ----RGGYTDIVELLLTREVDVNVYDWNGGTPL-LYAVRGNHVKCVESLLNSGADVTQ 254 (296)
T ss_pred ----cCChHHHHHHHHhcCCCcceeccCCCcee-eeeecCChHHHHHHHHhcCCCccc
Confidence 77888888888888888888888888888 666677788888888877776444
No 118
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.75 E-value=2.1e-18 Score=149.55 Aligned_cols=126 Identities=28% Similarity=0.386 Sum_probs=108.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
-|++||||||..||..+|+.|++ .|+.+|..+.-..||||+|+..||.++|+.|+++.+|+|+.+..|.|||||||
T Consensus 33 hgfsplhwaakegh~aivemll~----rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyac 108 (448)
T KOG0195|consen 33 HGFSPLHWAAKEGHVAIVEMLLS----RGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYAC 108 (448)
T ss_pred cCcchhhhhhhcccHHHHHHHHh----cccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhh
Confidence 48999999999999999999999 78999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706 83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~ 137 (438)
+| |...+++-|+..|+.+++-+++|.||+ -.+...-..-+.++-.+.|..
T Consensus 109 fw----gydqiaedli~~ga~v~icnk~g~tpl-dkakp~l~~~l~e~aek~gq~ 158 (448)
T KOG0195|consen 109 FW----GYDQIAEDLISCGAAVNICNKKGMTPL-DKAKPMLKNTLLEIAEKHGQS 158 (448)
T ss_pred hh----cHHHHHHHHHhccceeeecccCCCCch-hhhchHHHHHHHHHHHHhCCC
Confidence 65 567899999999999999999999999 444432222233333344443
No 119
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.75 E-value=7e-18 Score=149.22 Aligned_cols=110 Identities=20% Similarity=0.204 Sum_probs=98.7
Q ss_pred CCCcHHHHHHHc---CCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHH--cCCHHHHHHHHHCCCCcccccCCCCcH
Q 013706 3 MAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK--NGCNEAAKLLLAHGAFIEAKANNGMTP 77 (438)
Q Consensus 3 ~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~--~g~~~~v~~Ll~~g~~~~~~~~~g~t~ 77 (438)
.|+||||+|+.. ++.+++++|++ .|+++|.+|..|.||||+|+. .++.+++++|++.|++++.+|..|.||
T Consensus 86 ~g~TpLh~a~~~~~~~~~eiv~~Ll~----~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~ 161 (209)
T PHA02859 86 NNLSALHHYLSFNKNVEPEILKILID----SGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNI 161 (209)
T ss_pred CCCCHHHHHHHhCccccHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcH
Confidence 689999998864 47999999999 789999999999999999986 468999999999999999999999999
Q ss_pred HHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccc
Q 013706 78 LHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS 119 (438)
Q Consensus 78 L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a 119 (438)
||.++. ..++.+++++|+++|++++.+|..|+||++++.
T Consensus 162 Lh~~a~---~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~ 200 (209)
T PHA02859 162 LYSYIL---FHSDKKIFDFLTSLGIDINETNKSGYNCYDLIK 200 (209)
T ss_pred HHHHHH---hcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHh
Confidence 996442 567899999999999999999999999995444
No 120
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.75 E-value=2.8e-18 Score=137.93 Aligned_cols=112 Identities=33% Similarity=0.364 Sum_probs=99.9
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
.+|+||||-|+.+||.++|+.|+. .|++.+++...||||||-||...+.+|+..|+++|+|+|++.....||||.|
T Consensus 95 ~D~YTpLHRAaYn~h~div~~ll~----~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhla 170 (228)
T KOG0512|consen 95 EDEYTPLHRAAYNGHLDIVHELLL----SGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLA 170 (228)
T ss_pred cccccHHHHHHhcCchHHHHHHHH----ccCCcccccccCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHh
Confidence 489999999999999999999998 7999999999999999999999999999999999999999999899999999
Q ss_pred hhcccccCcHHHHHHHH-hCCCCCcccCCCCCccccccccC
Q 013706 82 VWYSIRSEDYATVKTLL-EYNADCSAKDNEGKTPLDHLSNG 121 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll-~~ga~~~~~d~~g~t~l~~~a~~ 121 (438)
|. .++....+.+|+ ..+..+..++..+.||+ ..|.+
T Consensus 171 a~---~rn~r~t~~~Ll~dryi~pg~~nn~eeta~-~iARR 207 (228)
T KOG0512|consen 171 AG---NRNSRDTLELLLHDRYIHPGLKNNLEETAF-DIARR 207 (228)
T ss_pred hc---ccchHHHHHHHhhccccChhhhcCccchHH-HHHHH
Confidence 94 334456677766 45899999999999999 55543
No 121
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.75 E-value=1.1e-17 Score=171.95 Aligned_cols=102 Identities=27% Similarity=0.333 Sum_probs=94.0
Q ss_pred cHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcc
Q 013706 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYS 85 (438)
Q Consensus 6 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 85 (438)
++||.|+..|+.++++.|++ .|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 84 ~~L~~aa~~G~~~~vk~LL~----~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~--- 156 (664)
T PTZ00322 84 VELCQLAASGDAVGARILLT----GGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAE--- 156 (664)
T ss_pred HHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH---
Confidence 46899999999999999998 78999999999999999999999999999999999999999999999999999
Q ss_pred cccCcHHHHHHHHhC-------CCCCcccCCCCCccc
Q 013706 86 IRSEDYATVKTLLEY-------NADCSAKDNEGKTPL 115 (438)
Q Consensus 86 ~~~~~~~~~~~Ll~~-------ga~~~~~d~~g~t~l 115 (438)
..++.+++++|+.+ |++++..+..|.+|+
T Consensus 157 -~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~ 192 (664)
T PTZ00322 157 -ENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPS 192 (664)
T ss_pred -HCCcHHHHHHHHhCCCcccccCCCCCccccCCCCcc
Confidence 88999999999988 777777777777665
No 122
>PHA02946 ankyin-like protein; Provisional
Probab=99.75 E-value=5.7e-18 Score=166.58 Aligned_cols=124 Identities=26% Similarity=0.273 Sum_probs=63.0
Q ss_pred CcHHHHHHH--cCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 5 QTPLHVSAG--YNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 5 ~tpLh~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
.++||.++. .++.++|++|++ .|+++|.+|..|+||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+
T Consensus 38 ~~~Lh~~~~~~~~~~~iv~~Ll~----~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~ 113 (446)
T PHA02946 38 YHILHAYCGIKGLDERFVEELLH----RGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLS 113 (446)
T ss_pred ChHHHHHHHhcCCCHHHHHHHHH----CcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHH
Confidence 455555442 224455555555 45555555555555555555555555555555555555555555555555554
Q ss_pred hcccccCcHHHHHHHHhCCCCCcc-cCCCCCccccccccCCCchhHHHHHHhccc
Q 013706 83 WYSIRSEDYATVKTLLEYNADCSA-KDNEGKTPLDHLSNGPGSAKLRELLLWHSE 136 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~~~-~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~ 136 (438)
.. ..+..+++++|+++|++++. .|..|.||| +++. .+..+++++|+..++
T Consensus 114 ~~--~~~~~e~v~lLl~~Gadin~~~d~~g~tpL-~aa~-~~~~~vv~~Ll~~ga 164 (446)
T PHA02946 114 GT--DDEVIERINLLVQYGAKINNSVDEEGCGPL-LACT-DPSERVFKKIMSIGF 164 (446)
T ss_pred Hc--CCchHHHHHHHHHcCCCcccccCCCCCcHH-HHHH-CCChHHHHHHHhccc
Confidence 11 11234555555555555553 355555555 3332 234445555554443
No 123
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.75 E-value=1.3e-17 Score=175.86 Aligned_cols=173 Identities=20% Similarity=0.273 Sum_probs=134.1
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcC---CcCCCCEEE
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVTE 236 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~---~~~~~~~~~ 236 (438)
.++.++|.+....++.+++. .+...+++|+||||||||++|+.++..+.... ......++.
T Consensus 171 ~~~~~igr~~ei~~~~~~l~----------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLS----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHh----------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 46779999986665555421 23567899999999999999999999874311 122346777
Q ss_pred eeccccc--ccccccchHHHHHHHHHc----cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCC
Q 013706 237 VQRTDLV--GEFVGHTGPKTRRRIKEA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 310 (438)
Q Consensus 237 ~~~~~~~--~~~~g~~~~~~~~~~~~a----~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~ 310 (438)
++...++ .+|.|+.+..++.+|++. .+.||||||+|.+...+.+.+ ...+.+.|...+..+.+.+|++||.
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~---~~d~~~~Lk~~l~~g~i~~IgaTt~ 311 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG---AMDAGNMLKPALARGELHCIGATTL 311 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc---hhHHHHHhchhhhcCceEEEEeCcH
Confidence 7766664 468899999999998865 358999999999986443211 2345678888888999999999999
Q ss_pred hhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhcc
Q 013706 311 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ 352 (438)
Q Consensus 311 ~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~ 352 (438)
+++...+..||++.+|| ..|.++.|+.++...|++....+.
T Consensus 312 ~e~r~~~~~d~al~rRf-~~i~v~~p~~~~~~~iL~~~~~~~ 352 (852)
T TIGR03346 312 DEYRKYIEKDAALERRF-QPVFVDEPTVEDTISILRGLKERY 352 (852)
T ss_pred HHHHHHhhcCHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHh
Confidence 99987777899999999 568999999999999998776654
No 124
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.75 E-value=2.7e-17 Score=164.74 Aligned_cols=188 Identities=16% Similarity=0.217 Sum_probs=134.6
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCc-eEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC----
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGILPTDR---- 233 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~~~~~---- 233 (438)
..|++++|++.+++.|...+.. ....| +||+||||||||++|+++|+.++........+
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~----------------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C 76 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDL----------------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC 76 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc----------------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC
Confidence 5799999999999988876431 23345 68999999999999999999997632211122
Q ss_pred -------------EEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHH
Q 013706 234 -------------VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEI 293 (438)
Q Consensus 234 -------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~l 293 (438)
++++++++- ..-..++.+++.. +..|+||||+|.|.. ...|.|
T Consensus 77 ~~C~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-----------~a~NAL 139 (647)
T PRK07994 77 DNCREIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNAL 139 (647)
T ss_pred HHHHHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH-----------HHHHHH
Confidence 233333210 1122344444432 336999999999986 455999
Q ss_pred HhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHH
Q 013706 294 MSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA 371 (438)
Q Consensus 294 l~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 371 (438)
|..|++ +.+++|++|+... .+ .+.+++|+ ..++|.+++.+++.+.+++.+.++. ..++.++
T Consensus 140 LKtLEEPp~~v~FIL~Tt~~~--kL---l~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~-----------i~~e~~a 202 (647)
T PRK07994 140 LKTLEEPPEHVKFLLATTDPQ--KL---PVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQ-----------IPFEPRA 202 (647)
T ss_pred HHHHHcCCCCeEEEEecCCcc--cc---chHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHH
Confidence 999998 6677777765433 23 67889997 9999999999999999999887642 3356677
Q ss_pred HHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706 372 IAALIEKETTEKQRREMNGGLVDPMLVNAREN 403 (438)
Q Consensus 372 ~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~ 403 (438)
+..+.... .|+.|...++++++...
T Consensus 203 L~~Ia~~s-------~Gs~R~Al~lldqaia~ 227 (647)
T PRK07994 203 LQLLARAA-------DGSMRDALSLTDQAIAS 227 (647)
T ss_pred HHHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence 77777654 67788888998877644
No 125
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.74 E-value=4.9e-17 Score=162.11 Aligned_cols=189 Identities=17% Similarity=0.203 Sum_probs=136.4
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC-----
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR----- 233 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~----- 233 (438)
..|++++|++.+++.|..++.. .+.+..+||+||||||||++|+++|+.++........+
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~---------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~ 77 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDE---------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ 77 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence 4799999999999998887441 12345689999999999999999999986532221111
Q ss_pred ------------EEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706 234 ------------VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 294 (438)
Q Consensus 234 ------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll 294 (438)
+++++.++ +.....++.+++.+ +..|+||||+|.|.. ...+.||
T Consensus 78 sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~-----------~A~NALL 140 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK-----------SAFNAML 140 (709)
T ss_pred HHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH-----------HHHHHHH
Confidence 22232221 11223566666543 347999999998864 4458999
Q ss_pred hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706 295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 372 (438)
Q Consensus 295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~ 372 (438)
..|++ +.+.+|++++... .+ .+.+++|+ ..|.|++++.+++...++..+.++. ..++.+++
T Consensus 141 KtLEEPp~~v~fILaTtd~~--kL---~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEg-----------i~id~eAL 203 (709)
T PRK08691 141 KTLEEPPEHVKFILATTDPH--KV---PVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEK-----------IAYEPPAL 203 (709)
T ss_pred HHHHhCCCCcEEEEEeCCcc--cc---chHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcC-----------CCcCHHHH
Confidence 99986 5566666654322 22 56778898 8899999999999999999998753 34677888
Q ss_pred HHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706 373 AALIEKETTEKQRREMNGGLVDPMLVNAREN 403 (438)
Q Consensus 373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~ 403 (438)
..+++.. .|+.|.+.+++++++..
T Consensus 204 ~~Ia~~A-------~GslRdAlnLLDqaia~ 227 (709)
T PRK08691 204 QLLGRAA-------AGSMRDALSLLDQAIAL 227 (709)
T ss_pred HHHHHHh-------CCCHHHHHHHHHHHHHh
Confidence 8888765 68889999999888764
No 126
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=3.4e-17 Score=161.77 Aligned_cols=189 Identities=14% Similarity=0.202 Sum_probs=132.7
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC------
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------ 232 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~------ 232 (438)
..|++++|++.+++.+...+.. ...+..+||+||||||||++|+.+|+.+.........
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~---------------~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALET---------------QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCE 77 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 4799999999999888876431 1123348899999999999999999988642211111
Q ss_pred -----------CEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706 233 -----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 294 (438)
Q Consensus 233 -----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll 294 (438)
.+++++... ..| -..++.+++.+ ...|+||||+|.+.. ...+.||
T Consensus 78 sC~~i~~~~~~dlieidaas----~~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-----------~a~naLL 140 (546)
T PRK14957 78 NCVAINNNSFIDLIEIDAAS----RTG--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-----------QSFNALL 140 (546)
T ss_pred HHHHHhcCCCCceEEeeccc----ccC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhccH-----------HHHHHHH
Confidence 222332211 111 12334444332 347999999999976 3458999
Q ss_pred hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706 295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 372 (438)
Q Consensus 295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~ 372 (438)
..|++ +.+++|++|+. ...+ .+++++|+ ..++|.+++.+++...++..+.++. ..++++++
T Consensus 141 K~LEepp~~v~fIL~Ttd--~~ki---l~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~eg-----------i~~e~~Al 203 (546)
T PRK14957 141 KTLEEPPEYVKFILATTD--YHKI---PVTILSRC-IQLHLKHISQADIKDQLKIILAKEN-----------INSDEQSL 203 (546)
T ss_pred HHHhcCCCCceEEEEECC--hhhh---hhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99998 56667766643 2333 56689998 9999999999999999999887642 34577888
Q ss_pred HHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706 373 AALIEKETTEKQRREMNGGLVDPMLVNAREN 403 (438)
Q Consensus 373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~ 403 (438)
..++... .|+.|.+.+.+++++..
T Consensus 204 ~~Ia~~s-------~GdlR~alnlLek~i~~ 227 (546)
T PRK14957 204 EYIAYHA-------KGSLRDALSLLDQAISF 227 (546)
T ss_pred HHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence 8877765 67889999999988754
No 127
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.74 E-value=2.2e-17 Score=171.37 Aligned_cols=210 Identities=19% Similarity=0.238 Sum_probs=152.2
Q ss_pred HHHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEE
Q 013706 157 LENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 236 (438)
Q Consensus 157 ~~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 236 (438)
....|++++|.+...+.+.+.+..+ +....+|||+||||||||++|++|+.... ....+|+.
T Consensus 371 ~n~~~~~liG~S~~~~~~~~~~~~~--------------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~----r~~~~~v~ 432 (686)
T PRK15429 371 VDSEFGEIIGRSEAMYSVLKQVEMV--------------AQSDSTVLILGETGTGKELIARAIHNLSG----RNNRRMVK 432 (686)
T ss_pred ccccccceeecCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCcCHHHHHHHHHHhcC----CCCCCeEE
Confidence 3356778999998888887766544 34667999999999999999999998543 34569999
Q ss_pred eeccccc-----ccccccch-------HHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC----
Q 013706 237 VQRTDLV-----GEFVGHTG-------PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG---- 300 (438)
Q Consensus 237 ~~~~~~~-----~~~~g~~~-------~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~---- 300 (438)
++|..+. ..++|+.. ......|+.+.+|+||||||+.+....| ..|+..++++
T Consensus 433 i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q-----------~~L~~~l~~~~~~~ 501 (686)
T PRK15429 433 MNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQ-----------PKLLRVLQEQEFER 501 (686)
T ss_pred EecccCChhHhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCHHHH-----------HHHHHHHHhCCEEe
Confidence 9998653 23555421 1223567889999999999999987544 7888877653
Q ss_pred ---------CEEEEEecCChhHHHHhh--hCcCccCCC-CcceeCCCCCH--HHHHHHHHHHHhcccccccccccccccc
Q 013706 301 ---------KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSS 366 (438)
Q Consensus 301 ---------~v~vi~~~~~~~~~~~~~--~~p~l~~R~-~~~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~~~~~ 366 (438)
++.+|++++.+....+.. -.+.|..|+ ...|.+|++.. +++..+++.++.+...+ ++..+ ..
T Consensus 502 ~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~---~~~~~-~~ 577 (686)
T PRK15429 502 LGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARR---MGRNI-DS 577 (686)
T ss_pred CCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHH---cCCCC-CC
Confidence 357888876655432210 012344466 45788888874 78999999998876431 12222 35
Q ss_pred ccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhh
Q 013706 367 CSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD 405 (438)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~ 405 (438)
++.+++..+..+.| |||.++|++++++|+....
T Consensus 578 ~s~~al~~L~~y~W------PGNvrEL~~~i~~a~~~~~ 610 (686)
T PRK15429 578 IPAETLRTLSNMEW------PGNVRELENVIERAVLLTR 610 (686)
T ss_pred cCHHHHHHHHhCCC------CCcHHHHHHHHHHHHHhCC
Confidence 88999999999999 9999999999999987543
No 128
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.74 E-value=8e-18 Score=155.29 Aligned_cols=121 Identities=35% Similarity=0.393 Sum_probs=114.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
...|||-.||..||+++|++|++ +|+|++..|..|.|.||+||..||.+++++|++.|+|+|.++..|.|+||.++
T Consensus 116 TNStPLraACfDG~leivKyLvE----~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~ca 191 (615)
T KOG0508|consen 116 TNSTPLRAACFDGHLEIVKYLVE----HGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCA 191 (615)
T ss_pred cCCccHHHHHhcchhHHHHHHHH----cCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhh
Confidence 45699999999999999999999 79999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHh
Q 013706 83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLW 133 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~ 133 (438)
..|+.+++++|+.+|+.++ +|.+|.||| ..|+..++..++++|+.
T Consensus 192 ----EsG~vdivq~Ll~~ga~i~-~d~~GmtPL-~~Aa~tG~~~iVe~L~~ 236 (615)
T KOG0508|consen 192 ----ESGSVDIVQLLLKHGAKID-VDGHGMTPL-LLAAVTGHTDIVERLLQ 236 (615)
T ss_pred ----hcccHHHHHHHHhCCceee-ecCCCCchH-HHHhhhcchHHHHHHhc
Confidence 8999999999999999876 477799999 88888899999999986
No 129
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.74 E-value=1.5e-17 Score=126.29 Aligned_cols=89 Identities=42% Similarity=0.582 Sum_probs=81.2
Q ss_pred HHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccc
Q 013706 8 LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIR 87 (438)
Q Consensus 8 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 87 (438)
||+||..|+++++++|++ .+.+++. |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+ .
T Consensus 1 L~~A~~~~~~~~~~~ll~----~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~----~ 68 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLE----KGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAA----E 68 (89)
T ss_dssp HHHHHHTTTHHHHHHHHH----TTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHH----H
T ss_pred CHHHHHcCCHHHHHHHHH----CcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHH----H
Confidence 799999999999999999 5666665 899999999999999999999999999999999999999999 8
Q ss_pred cCcHHHHHHHHhCCCCCcccC
Q 013706 88 SEDYATVKTLLEYNADCSAKD 108 (438)
Q Consensus 88 ~~~~~~~~~Ll~~ga~~~~~d 108 (438)
.++.+++++|+++|++++.+|
T Consensus 69 ~~~~~~~~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 69 NGNLEIVKLLLEHGADVNIRN 89 (89)
T ss_dssp TTHHHHHHHHHHTTT-TTSS-
T ss_pred cCCHHHHHHHHHcCCCCCCcC
Confidence 899999999999999998875
No 130
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.6e-16 Score=142.08 Aligned_cols=160 Identities=18% Similarity=0.250 Sum_probs=105.3
Q ss_pred CcEEEEeCcccccCCCCCCCchhHH-HHHHHHHhhccC------------CCEEEEEecC---ChhHHHHhhhCcCccCC
Q 013706 263 GGILFVDEAYRLIPMQKADDKDYGI-EALEEIMSVMDG------------GKVVVIFAGY---SEPMKRVIASNEGFCRR 326 (438)
Q Consensus 263 ~~il~iDEid~l~~~~~~~~~~~~~-~~~~~ll~~~~~------------~~v~vi~~~~---~~~~~~~~~~~p~l~~R 326 (438)
.||+||||||+++.+.+.++++.++ .+...||..+++ ..+.+|+++- ..|.+ + -|.|..|
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSD-L---iPELQGR 326 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSD-L---IPELQGR 326 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhh-c---ChhhcCC
Confidence 4999999999999877644434444 577899999997 2467888762 33333 2 6999999
Q ss_pred CCcceeCCCCCHHHHHHHHH----HHHhccccccccccccccccccHHHHHHHHHHHhhHh--hhccccccchHHHHHHH
Q 013706 327 VTKFFHFNDFNSEELAKILH----IKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEK--QRREMNGGLVDPMLVNA 400 (438)
Q Consensus 327 ~~~~i~~~~~~~~e~~~il~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~n~~~l~~~~~~a 400 (438)
||..+++..++.++...||. ..+++......+. .+...++++++..++.-.|... .++- .+|-|-.++++.
T Consensus 327 fPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE--~v~l~FtddaI~~iAeiA~~vN~~~ENI-GARRLhTvlErl 403 (444)
T COG1220 327 FPIRVELDALTKEDFERILTEPKASLIKQYKALLKTE--GVELEFTDDAIKRIAEIAYQVNEKTENI-GARRLHTVLERL 403 (444)
T ss_pred CceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhc--CeeEEecHHHHHHHHHHHHHhcccccch-hHHHHHHHHHHH
Confidence 99999999999999999982 2222222111122 3456678999999998776432 2222 246676777766
Q ss_pred HHHhhccccCCCCCh-hhhhhccHHHHHHHHHHH
Q 013706 401 RENLDLRLSFDCLDT-DELRTITLEDLEAGLKLL 433 (438)
Q Consensus 401 ~~~~~~r~~~~~~~~-~~~~~i~~~d~~~a~~~~ 433 (438)
... ++++..+. .+..+|+.+=+.+-+..+
T Consensus 404 Led----iSFeA~d~~g~~v~Id~~yV~~~l~~l 433 (444)
T COG1220 404 LED----ISFEAPDMSGQKVTIDAEYVEEKLGDL 433 (444)
T ss_pred HHH----hCccCCcCCCCeEEEcHHHHHHHHHHH
Confidence 554 34433332 234567777777666544
No 131
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.74 E-value=7.7e-17 Score=145.11 Aligned_cols=186 Identities=14% Similarity=0.149 Sum_probs=121.9
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHc-cCcEEEEeCcccccC
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIP 276 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-~~~il~iDEid~l~~ 276 (438)
.+.+++|+||||||||++|+++++.+...+ .+++.++++.+.... ...+... ...+|||||+|.+..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~----~~~~~i~~~~~~~~~--------~~~~~~~~~~~lLvIDdi~~l~~ 104 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERG----KSAIYLPLAELAQAD--------PEVLEGLEQADLVCLDDVEAIAG 104 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcC----CcEEEEeHHHHHHhH--------HHHHhhcccCCEEEEeChhhhcC
Confidence 567899999999999999999999886433 267777777664321 2233322 337999999999875
Q ss_pred CCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCC--CcceeCCCCCHHHHHHHHHHHHhcccc
Q 013706 277 MQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTE 354 (438)
Q Consensus 277 ~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~--~~~i~~~~~~~~e~~~il~~~l~~~~~ 354 (438)
... ..+.+..++..+.+....+|++++..+.. .-...+.|.+|+ ...+.+|+|+.+++..+++.++.+.
T Consensus 105 ~~~------~~~~L~~~l~~~~~~~~~iIits~~~~~~-~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~-- 175 (226)
T TIGR03420 105 QPE------WQEALFHLYNRVREAGGRLLIAGRAAPAQ-LPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARR-- 175 (226)
T ss_pred ChH------HHHHHHHHHHHHHHcCCeEEEECCCChHH-CCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHc--
Confidence 321 01223333333322222444554443322 111126677787 4789999999999999998877543
Q ss_pred ccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHH
Q 013706 355 DSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL 430 (438)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~ 430 (438)
+ ..++++++..+.. .| +||.++++++++++...+.. .-.+|+.+.+.+.+
T Consensus 176 -----~----~~~~~~~l~~L~~-~~------~gn~r~L~~~l~~~~~~~~~----------~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 176 -----G----LQLPDEVADYLLR-HG------SRDMGSLMALLDALDRASLA----------AKRKITIPFVKEVL 225 (226)
T ss_pred -----C----CCCCHHHHHHHHH-hc------cCCHHHHHHHHHHHHHHHHH----------hCCCCCHHHHHHHh
Confidence 1 3467888988888 47 99999999999987754311 12357777666654
No 132
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.74 E-value=1.3e-16 Score=152.69 Aligned_cols=189 Identities=20% Similarity=0.217 Sum_probs=126.5
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|++++|++.+++++.+++. ....++++|+||||||||++|+++++++...+ ....++.++
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~----------------~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~--~~~~~~~i~ 73 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVD----------------SPNLPHLLVQGPPGSGKTAAVRALARELYGDP--WENNFTEFN 73 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHh----------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCcc--cccceEEec
Confidence 358899999999999888643 12345899999999999999999999885322 123456677
Q ss_pred cccccccc-------------ccc-------chHHHHHHHHH--------ccCcEEEEeCcccccCCCCCCCchhHHHHH
Q 013706 239 RTDLVGEF-------------VGH-------TGPKTRRRIKE--------AEGGILFVDEAYRLIPMQKADDKDYGIEAL 290 (438)
Q Consensus 239 ~~~~~~~~-------------~g~-------~~~~~~~~~~~--------a~~~il~iDEid~l~~~~~~~~~~~~~~~~ 290 (438)
++++.... .+. ....++.++.. +...+|||||+|.+.+.. .
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~-----------~ 142 (337)
T PRK12402 74 VADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDA-----------Q 142 (337)
T ss_pred hhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHH-----------H
Confidence 66543221 111 01122222222 234799999999886422 2
Q ss_pred HHHHhhccC---CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccc
Q 013706 291 EEIMSVMDG---GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSC 367 (438)
Q Consensus 291 ~~ll~~~~~---~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~ 367 (438)
+.|...++. ...+|++++++. .+ .++|++|+ ..+.|++|+.+++..+++..+.+.. ..+
T Consensus 143 ~~L~~~le~~~~~~~~Il~~~~~~---~~---~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~-----------~~~ 204 (337)
T PRK12402 143 QALRRIMEQYSRTCRFIIATRQPS---KL---IPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEG-----------VDY 204 (337)
T ss_pred HHHHHHHHhccCCCeEEEEeCChh---hC---chhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcC-----------CCC
Confidence 455555543 333444443332 22 57788897 7899999999999999999887642 336
Q ss_pred cHHHHHHHHHHHhhHhhhccccccchHHHHHHHH
Q 013706 368 SMDAIAALIEKETTEKQRREMNGGLVDPMLVNAR 401 (438)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~ 401 (438)
+++++..++... +||.|.+.+.++.+.
T Consensus 205 ~~~al~~l~~~~-------~gdlr~l~~~l~~~~ 231 (337)
T PRK12402 205 DDDGLELIAYYA-------GGDLRKAILTLQTAA 231 (337)
T ss_pred CHHHHHHHHHHc-------CCCHHHHHHHHHHHH
Confidence 788888888765 678888888777654
No 133
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.73 E-value=1.9e-17 Score=138.21 Aligned_cols=123 Identities=26% Similarity=0.359 Sum_probs=112.1
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
..|+|||.||+.+||+.+|++||+ .|++++...+...|+|++|++.|..++|++|+.++.|+|.-|-+|-|||.||
T Consensus 158 e~GfTpLiWAaa~G~i~vV~fLL~----~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyA 233 (296)
T KOG0502|consen 158 EFGFTPLIWAAAKGHIPVVQFLLN----SGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYA 233 (296)
T ss_pred ccCchHhHHHHhcCchHHHHHHHH----cCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeee
Confidence 469999999999999999999999 7999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHh
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLW 133 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~ 133 (438)
+ +.++.+||+.|++.|++++..+..|+++++.+.. .++..+.+.+.+
T Consensus 234 v----rgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAVa-lGyr~Vqqvie~ 280 (296)
T KOG0502|consen 234 V----RGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVA-LGYRIVQQVIEK 280 (296)
T ss_pred e----cCChHHHHHHHHhcCCCcccccccCCcHHHHHHH-hhhHHHHHHHHH
Confidence 9 8999999999999999999999999999955544 455555555543
No 134
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.73 E-value=1.3e-16 Score=166.10 Aligned_cols=219 Identities=21% Similarity=0.289 Sum_probs=150.2
Q ss_pred HHHHHHH-hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC
Q 013706 155 DELENEL-SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR 233 (438)
Q Consensus 155 ~~~~~~l-~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~ 233 (438)
..+...+ ..++|++.+++.+.+.+... ..+......+..++||+||||||||.+|+++|+.++. +
T Consensus 446 ~~l~~~l~~~v~GQ~~ai~~l~~~i~~~-------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~-------~ 511 (731)
T TIGR02639 446 KNLEKNLKAKIFGQDEAIDSLVSSIKRS-------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV-------H 511 (731)
T ss_pred HHHHHHHhcceeCcHHHHHHHHHHHHHH-------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC-------C
Confidence 3344444 35789998888877764432 2232222223446899999999999999999998854 6
Q ss_pred EEEeecccccc---------c---ccccc-hHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC
Q 013706 234 VTEVQRTDLVG---------E---FVGHT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG 300 (438)
Q Consensus 234 ~~~~~~~~~~~---------~---~~g~~-~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~ 300 (438)
++.++.+++.. . |+|.. ...+.+.++....+||||||+|++.+ .+.+.|++.||++
T Consensus 512 ~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~-----------~~~~~Ll~~ld~g 580 (731)
T TIGR02639 512 LERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHP-----------DIYNILLQVMDYA 580 (731)
T ss_pred eEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCH-----------HHHHHHHHhhccC
Confidence 67776655322 1 34432 23456667777789999999999987 5569999999864
Q ss_pred -------------CEEEEEecCChhHH-------------------HHh-hhCcCccCCCCcceeCCCCCHHHHHHHHHH
Q 013706 301 -------------KVVVIFAGYSEPMK-------------------RVI-ASNEGFCRRVTKFFHFNDFNSEELAKILHI 347 (438)
Q Consensus 301 -------------~v~vi~~~~~~~~~-------------------~~~-~~~p~l~~R~~~~i~~~~~~~~e~~~il~~ 347 (438)
+.++|++++...-. .+. .-.|+|+.||+.+|.|.+++.+++.+|++.
T Consensus 581 ~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~ 660 (731)
T TIGR02639 581 TLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQK 660 (731)
T ss_pred eeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHH
Confidence 34577766431100 000 125899999999999999999999999999
Q ss_pred HHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 348 KMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
.+.+...+....+ +...++++++..++...+. ...++|.++..+++.....
T Consensus 661 ~L~~l~~~l~~~~--~~l~i~~~a~~~La~~~~~----~~~GaR~l~r~i~~~~~~~ 711 (731)
T TIGR02639 661 FVDELSKQLNEKN--IKLELTDDAKKYLAEKGYD----EEFGARPLARVIQEEIKKP 711 (731)
T ss_pred HHHHHHHHHHhCC--CeEEeCHHHHHHHHHhCCC----cccCchHHHHHHHHHhHHH
Confidence 9987654332222 3456788999999886431 1345788999888877654
No 135
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.73 E-value=1.2e-17 Score=167.78 Aligned_cols=129 Identities=31% Similarity=0.389 Sum_probs=113.4
Q ss_pred CCCCcHHHHHH--HcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcC--CHHHHHHHHHCCCCcccccCCCCcH
Q 013706 2 QMAQTPLHVSA--GYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG--CNEAAKLLLAHGAFIEAKANNGMTP 77 (438)
Q Consensus 2 ~~g~tpLh~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g--~~~~v~~Ll~~g~~~~~~~~~g~t~ 77 (438)
..|.||||+|+ ..|+.+++++|++ .|++++..+..|.||||+|+..| +.+++++|+++|++++.++..|.||
T Consensus 104 ~~g~tpL~~A~~~~~~~~~iv~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tp 179 (480)
T PHA03100 104 NNGITPLLYAISKKSNSYSIVEYLLD----NGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTP 179 (480)
T ss_pred CCCCchhhHHHhcccChHHHHHHHHH----cCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCH
Confidence 36899999999 9999999999998 68889999999999999999999 8999999999999999999999999
Q ss_pred HHHHhhcccccCcHHHHHHHHhCCCCCcccCCCC------CccccccccCCCc--hhHHHHHHhccchHH
Q 013706 78 LHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEG------KTPLDHLSNGPGS--AKLRELLLWHSEEQR 139 (438)
Q Consensus 78 L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g------~t~l~~~a~~~~~--~~~~~lL~~~~~~~~ 139 (438)
||+|+ ..|+.+++++|+++|++++..+..| .||+ +.++..+. .+++++|+..|++..
T Consensus 180 L~~A~----~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l-~~a~~~~~~~~~iv~~Ll~~g~din 244 (480)
T PHA03100 180 LHIAV----EKGNIDVIKFLLDNGADINAGDIETLLFTIFETPL-HIAACYNEITLEVVNYLLSYGVPIN 244 (480)
T ss_pred HHHHH----HhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHH-HHHHHhCcCcHHHHHHHHHcCCCCC
Confidence 99999 7889999999999999999998888 8999 55555666 888889988876644
No 136
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=2e-16 Score=158.71 Aligned_cols=189 Identities=17% Similarity=0.240 Sum_probs=135.1
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC-------
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT------- 231 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~------- 231 (438)
..|++++|++.+.+.++..+.. ...+..+||+||+|||||++|+.+|+.+........
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~---------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~ 77 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQ---------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECE 77 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccH
Confidence 5799999999999998887442 112334789999999999999999998864322111
Q ss_pred ----------CCEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706 232 ----------DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 294 (438)
Q Consensus 232 ----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll 294 (438)
..++++++++ +.....++.+.+.+ ...|+||||+|.|.. ...+.|+
T Consensus 78 ~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-----------~a~naLL 140 (559)
T PRK05563 78 ICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-----------GAFNALL 140 (559)
T ss_pred HHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHHH
Confidence 1233443321 12334456665543 347999999999975 4568999
Q ss_pred hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706 295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 372 (438)
Q Consensus 295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~ 372 (438)
..+++ ..+++|++|+.. ..+ .|++++|+ ..+.|++|+.+++...+...+.+.. ..++++++
T Consensus 141 KtLEepp~~~ifIlatt~~--~ki---~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~eg-----------i~i~~~al 203 (559)
T PRK05563 141 KTLEEPPAHVIFILATTEP--HKI---PATILSRC-QRFDFKRISVEDIVERLKYILDKEG-----------IEYEDEAL 203 (559)
T ss_pred HHhcCCCCCeEEEEEeCCh--hhC---cHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99987 456667665432 333 67889998 7899999999999999999887642 23566777
Q ss_pred HHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706 373 AALIEKETTEKQRREMNGGLVDPMLVNAREN 403 (438)
Q Consensus 373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~ 403 (438)
..++... .|+.|++.+.++++...
T Consensus 204 ~~ia~~s-------~G~~R~al~~Ldq~~~~ 227 (559)
T PRK05563 204 RLIARAA-------EGGMRDALSILDQAISF 227 (559)
T ss_pred HHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence 7777754 57788888998887654
No 137
>PHA03095 ankyrin-like protein; Provisional
Probab=99.73 E-value=2.3e-17 Score=165.32 Aligned_cols=133 Identities=32% Similarity=0.409 Sum_probs=116.5
Q ss_pred CCCCcHHHHHHHcC---CHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcC-CHHHHHHHHHCCCCcccccCCCCcH
Q 013706 2 QMAQTPLHVSAGYN---KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG-CNEAAKLLLAHGAFIEAKANNGMTP 77 (438)
Q Consensus 2 ~~g~tpLh~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~t~ 77 (438)
..|.||||+|+..+ +.+++++|++ .|+++|.+|..|+||||+|+..| +.+++++|+++|++++.+|..|.||
T Consensus 45 ~~g~t~Lh~a~~~~~~~~~~iv~~Ll~----~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tp 120 (471)
T PHA03095 45 EYGKTPLHLYLHYSSEKVKDIVRLLLE----AGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTP 120 (471)
T ss_pred CCCCCHHHHHHHhcCCChHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 36899999999998 9999999999 79999999999999999999999 5999999999999999999999999
Q ss_pred HHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccC-CCchhHHHHHHhccchHHH
Q 013706 78 LHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNG-PGSAKLRELLLWHSEEQRK 140 (438)
Q Consensus 78 L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~-~~~~~~~~lL~~~~~~~~~ 140 (438)
||+|+.. ..++.+++++|+++|++++..|..|.||||.+... ....+++++|+..+.+...
T Consensus 121 Lh~a~~~--~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~ 182 (471)
T PHA03095 121 LHVYLSG--FNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYA 182 (471)
T ss_pred HHHHhhC--CcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcc
Confidence 9999821 34678999999999999999999999999554433 3357889999888765443
No 138
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1.5e-16 Score=156.99 Aligned_cols=187 Identities=18% Similarity=0.246 Sum_probs=131.9
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCc-eEEecCCCCCHHHHHHHHHHHHHHcCCc--------
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGIL-------- 229 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~-------- 229 (438)
..|++++|++.+++.|..++.. ...+| +||+||||||||++|+++|+.+...+..
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~----------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~ 74 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQ----------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECE 74 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHc----------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcCh
Confidence 4689999999999999887442 23345 5999999999999999999998743211
Q ss_pred --------CCCCEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706 230 --------PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 294 (438)
Q Consensus 230 --------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll 294 (438)
....++++++++- .....++.+.+.+ ...|+||||+|.+.. ..++.|+
T Consensus 75 sc~~i~~~~h~dv~el~~~~~------~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~-----------~a~naLL 137 (504)
T PRK14963 75 SCLAVRRGAHPDVLEIDAASN------NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSK-----------SAFNALL 137 (504)
T ss_pred hhHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCCeEEEEECccccCH-----------HHHHHHH
Confidence 1122444443311 1122344443322 347999999998753 4568999
Q ss_pred hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706 295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 372 (438)
Q Consensus 295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~ 372 (438)
..+++ ..+++|++++.. ..+ .+.+++|+ ..++|++|+.+++...++..+.+.. ..++++++
T Consensus 138 k~LEep~~~t~~Il~t~~~--~kl---~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~eg-----------i~i~~~Al 200 (504)
T PRK14963 138 KTLEEPPEHVIFILATTEP--EKM---PPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEG-----------REAEPEAL 200 (504)
T ss_pred HHHHhCCCCEEEEEEcCCh--hhC---ChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99987 455666655432 222 67888898 6899999999999999999988753 23577888
Q ss_pred HHHHHHHhhHhhhccccccchHHHHHHHHH
Q 013706 373 AALIEKETTEKQRREMNGGLVDPMLVNARE 402 (438)
Q Consensus 373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~ 402 (438)
..++... .|+.|.+.+.++++..
T Consensus 201 ~~ia~~s-------~GdlR~aln~Lekl~~ 223 (504)
T PRK14963 201 QLVARLA-------DGAMRDAESLLERLLA 223 (504)
T ss_pred HHHHHHc-------CCCHHHHHHHHHHHHh
Confidence 8888765 6788889999888754
No 139
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.73 E-value=2.5e-16 Score=157.88 Aligned_cols=223 Identities=18% Similarity=0.174 Sum_probs=146.8
Q ss_pred hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCce-EEecCCCCCHHHHHHHHHHHHHHc---CCcCCCCEEEe
Q 013706 162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHM-AFLGNPGTGKTMVARILGRLLYMV---GILPTDRVTEV 237 (438)
Q Consensus 162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ll~GppGtGKT~la~~la~~l~~~---~~~~~~~~~~~ 237 (438)
+.|.|.+.-.++|..++..... ...+.++ +++||||||||++++.+.+++... .......++.+
T Consensus 755 D~LPhREeEIeeLasfL~paIk------------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYI 822 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK------------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEI 822 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh------------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEE
Confidence 5678888888888777554321 1234455 599999999999999999888431 11222456788
Q ss_pred eccccc----------cccccc-------chHHHHHHHHHc----c-CcEEEEeCcccccCCCCCCCchhHHHHHHHHHh
Q 013706 238 QRTDLV----------GEFVGH-------TGPKTRRRIKEA----E-GGILFVDEAYRLIPMQKADDKDYGIEALEEIMS 295 (438)
Q Consensus 238 ~~~~~~----------~~~~g~-------~~~~~~~~~~~a----~-~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~ 295 (438)
+|..+. .++.|. +...+..+|... . ..||+|||||.|....| .++..|+.
T Consensus 823 NCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~Q--------DVLYnLFR 894 (1164)
T PTZ00112 823 NGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQ--------KVLFTLFD 894 (1164)
T ss_pred eCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHH--------HHHHHHHH
Confidence 885422 112222 223344555543 1 25999999999987544 55555555
Q ss_pred hcc--CCCEEEEEecCChhHHHHhhhCcCccCCCC-cceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706 296 VMD--GGKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 372 (438)
Q Consensus 296 ~~~--~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~-~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~ 372 (438)
... +..++||++++.-.+... .+|.+++||. ..|.|++|+.+|+.+||+..+.... ..++++++
T Consensus 895 ~~~~s~SKLiLIGISNdlDLper--LdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~-----------gVLdDdAI 961 (1164)
T PTZ00112 895 WPTKINSKLVLIAISNTMDLPER--LIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCK-----------EIIDHTAI 961 (1164)
T ss_pred HhhccCCeEEEEEecCchhcchh--hhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCC-----------CCCCHHHH
Confidence 433 467888888764333222 2788999994 4699999999999999999887521 23667777
Q ss_pred HHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHH
Q 013706 373 AALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 433 (438)
Q Consensus 373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~ 433 (438)
..++.... ...|++|....++++|.+.+ +...|+.+|+.+|+..+
T Consensus 962 ELIArkVA----q~SGDARKALDILRrAgEik------------egskVT~eHVrkAleei 1006 (1164)
T PTZ00112 962 QLCARKVA----NVSGDIRKALQICRKAFENK------------RGQKIVPRDITEATNQL 1006 (1164)
T ss_pred HHHHHhhh----hcCCHHHHHHHHHHHHHhhc------------CCCccCHHHHHHHHHHH
Confidence 66666321 12577888888888887642 11378899999998766
No 140
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.73 E-value=1.2e-17 Score=176.80 Aligned_cols=134 Identities=24% Similarity=0.405 Sum_probs=109.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhh
Q 013706 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW 83 (438)
Q Consensus 4 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 83 (438)
+.++||.||..|+.++++.|++ .|+++|..|..|+||||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+.
T Consensus 525 ~~~~L~~Aa~~g~~~~l~~Ll~----~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~ 600 (823)
T PLN03192 525 MASNLLTVASTGNAALLEELLK----AKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAIS 600 (823)
T ss_pred chhHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHH
Confidence 4678888888888888888887 677888888888888888888888888888888888888888888888886652
Q ss_pred ---------------------------cccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccc
Q 013706 84 ---------------------------YSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSE 136 (438)
Q Consensus 84 ---------------------------~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~ 136 (438)
++...|+.++++.|+++|++++.+|.+|+||| |.|+..++.+++++|+..|+
T Consensus 601 ~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpL-h~A~~~g~~~iv~~Ll~~GA 679 (823)
T PLN03192 601 AKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATAL-QVAMAEDHVDMVRLLIMNGA 679 (823)
T ss_pred hCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHCCcHHHHHHHHHcCC
Confidence 11256777888889999999999999999999 66666789999999999998
Q ss_pred hHHHHH
Q 013706 137 EQRKRR 142 (438)
Q Consensus 137 ~~~~~~ 142 (438)
+....+
T Consensus 680 dv~~~~ 685 (823)
T PLN03192 680 DVDKAN 685 (823)
T ss_pred CCCCCC
Confidence 765543
No 141
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1.8e-16 Score=158.57 Aligned_cols=189 Identities=17% Similarity=0.189 Sum_probs=133.7
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCc-----CCC-
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL-----PTD- 232 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~-----~~~- 232 (438)
..|++++|++.+.+.|..++..- ..+..+||+||+|||||++|+++|+.++..+.. ...
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~---------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p 77 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQ---------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP 77 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC---------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC
Confidence 57999999999999888874411 123346999999999999999999999753210 001
Q ss_pred ----------------CEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHH
Q 013706 233 ----------------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEA 289 (438)
Q Consensus 233 ----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~ 289 (438)
.++++++++- ..-..++++++.+ +..|+||||+|.|.. ..
T Consensus 78 Cg~C~~C~~i~~g~h~D~~eldaas~------~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~-----------~a 140 (618)
T PRK14951 78 CGVCQACRDIDSGRFVDYTELDAASN------RGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN-----------TA 140 (618)
T ss_pred CCccHHHHHHHcCCCCceeecCcccc------cCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH-----------HH
Confidence 1233332210 1223456666543 247999999999986 34
Q ss_pred HHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccc
Q 013706 290 LEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSC 367 (438)
Q Consensus 290 ~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~ 367 (438)
.|.|+..+++ +.+++|++|+... .+ .+.+++|+ ..++|.+++.+++.+.++..+.++. ..+
T Consensus 141 ~NaLLKtLEEPP~~~~fIL~Ttd~~--ki---l~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~eg-----------i~i 203 (618)
T PRK14951 141 FNAMLKTLEEPPEYLKFVLATTDPQ--KV---PVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAEN-----------VPA 203 (618)
T ss_pred HHHHHHhcccCCCCeEEEEEECCch--hh---hHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcC-----------CCC
Confidence 5899999987 5566666654322 22 45688898 9999999999999999999887653 345
Q ss_pred cHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706 368 SMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 403 (438)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~ 403 (438)
+++++..++... .|+.|.+.++++++...
T Consensus 204 e~~AL~~La~~s-------~GslR~al~lLdq~ia~ 232 (618)
T PRK14951 204 EPQALRLLARAA-------RGSMRDALSLTDQAIAF 232 (618)
T ss_pred CHHHHHHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence 678888888755 67888888988877654
No 142
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=7.3e-17 Score=160.90 Aligned_cols=188 Identities=19% Similarity=0.200 Sum_probs=133.9
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCc-eEEecCCCCCHHHHHHHHHHHHHHcCCcC-------
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGILP------- 230 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~~------- 230 (438)
..|++++|++.+++.|+.++. .....| +||+||+|||||++|+++|+.++......
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~----------------~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C 73 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALD----------------AGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC 73 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHH----------------cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc
Confidence 479999999999999888743 224456 69999999999999999999887421111
Q ss_pred ------------CCCEEEeecccccccccccchHHHHHHHHH-------ccCcEEEEeCcccccCCCCCCCchhHHHHHH
Q 013706 231 ------------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALE 291 (438)
Q Consensus 231 ------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~il~iDEid~l~~~~~~~~~~~~~~~~~ 291 (438)
...++++++++.. .-..++++.+. +...|+||||+|.|.. .+.|
T Consensus 74 ~~C~~i~~~~~~~~dvieidaas~~------gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~-----------~A~N 136 (584)
T PRK14952 74 ESCVALAPNGPGSIDVVELDAASHG------GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT-----------AGFN 136 (584)
T ss_pred HHHHHhhcccCCCceEEEecccccc------CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH-----------HHHH
Confidence 1123333332210 12233433332 2457999999999976 3559
Q ss_pred HHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccH
Q 013706 292 EIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSM 369 (438)
Q Consensus 292 ~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~ 369 (438)
.||..|++ ..+++|++|+.. ..+ .+++++|+ .+++|..++.+++.+.+...+.++. ..+++
T Consensus 137 ALLK~LEEpp~~~~fIL~tte~--~kl---l~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~eg-----------i~i~~ 199 (584)
T PRK14952 137 ALLKIVEEPPEHLIFIFATTEP--EKV---LPTIRSRT-HHYPFRLLPPRTMRALIARICEQEG-----------VVVDD 199 (584)
T ss_pred HHHHHHhcCCCCeEEEEEeCCh--Hhh---HHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcC-----------CCCCH
Confidence 99999998 677777776443 233 67889996 8999999999999999999888753 33566
Q ss_pred HHHHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706 370 DAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 403 (438)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~ 403 (438)
+++..++... .|+.|.+.++++++...
T Consensus 200 ~al~~Ia~~s-------~GdlR~aln~Ldql~~~ 226 (584)
T PRK14952 200 AVYPLVIRAG-------GGSPRDTLSVLDQLLAG 226 (584)
T ss_pred HHHHHHHHHc-------CCCHHHHHHHHHHHHhc
Confidence 7777776644 67788899999887643
No 143
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.72 E-value=3.2e-17 Score=139.56 Aligned_cols=104 Identities=23% Similarity=0.275 Sum_probs=94.7
Q ss_pred CCCCcHHHHHHHcCCHHH---HHHHhcCCCCCCccccccc-CCCChHHHHHHHcCCHHHHHHHHH-CCCCcccccCCCCc
Q 013706 2 QMAQTPLHVSAGYNKAEI---VKSLLEWPGNDKVELEAQN-MYGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANNGMT 76 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~---v~~Ll~~~~~~~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t 76 (438)
..|+||||+||..|+.+. +++|++ .|+++|.+| ..|+||||+|+..|+.+++++|+. .|++++.++..|.|
T Consensus 55 ~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~----~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~t 130 (166)
T PHA02743 55 HHGRQCTHMVAWYDRANAVMKIELLVN----MGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHET 130 (166)
T ss_pred CCCCcHHHHHHHhCccCHHHHHHHHHH----cCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCC
Confidence 369999999999998654 789998 789999998 589999999999999999999995 89999999999999
Q ss_pred HHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCc
Q 013706 77 PLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKT 113 (438)
Q Consensus 77 ~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t 113 (438)
|||+|+ ..++.+++++|+.+|++++.++..|..
T Consensus 131 pL~~A~----~~~~~~iv~~Ll~~ga~~~~~~~~~~~ 163 (166)
T PHA02743 131 AYHIAY----KMRDRRMMEILRANGAVCDDPLSIGLS 163 (166)
T ss_pred HHHHHH----HcCCHHHHHHHHHcCCCCCCcccCCcc
Confidence 999999 889999999999999999988877643
No 144
>PHA03095 ankyrin-like protein; Provisional
Probab=99.72 E-value=2.7e-17 Score=164.81 Aligned_cols=127 Identities=21% Similarity=0.218 Sum_probs=60.4
Q ss_pred CCCcHHHHHHHcC--CHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHc--CCHHHHHHHHHCCCCcccccCCCCcHH
Q 013706 3 MAQTPLHVSAGYN--KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKN--GCNEAAKLLLAHGAFIEAKANNGMTPL 78 (438)
Q Consensus 3 ~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~~~~~g~t~L 78 (438)
.|.||||+|+..+ +.+++++|++ .|++++..|..|+||||+++.. ++.++++.|++.|++++.+|..|.|||
T Consensus 151 ~g~tpL~~a~~~~~~~~~iv~~Ll~----~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpL 226 (471)
T PHA03095 151 YGMTPLAVLLKSRNANVELLRLLID----AGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPL 226 (471)
T ss_pred CCCCHHHHHHHcCCCCHHHHHHHHH----cCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHH
Confidence 3555555555433 3455555555 3444444444555555555442 344455555555555555555555555
Q ss_pred HHHhhcccccCc--HHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchH
Q 013706 79 HLSVWYSIRSED--YATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQ 138 (438)
Q Consensus 79 ~~A~~~~~~~~~--~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~ 138 (438)
|+|+ ..++ ..++..|+..|++++..|..|+||| |.|+..++.+++++|+..|++.
T Consensus 227 h~Aa----~~~~~~~~~v~~ll~~g~din~~d~~g~TpL-h~A~~~~~~~~v~~LL~~gad~ 283 (471)
T PHA03095 227 HSMA----TGSSCKRSLVLPLLIAGISINARNRYGQTPL-HYAAVFNNPRACRRLIALGADI 283 (471)
T ss_pred HHHH----hcCCchHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCC
Confidence 5554 2222 2344444445555555555555555 3333344444444444444443
No 145
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.72 E-value=9.7e-18 Score=157.65 Aligned_cols=131 Identities=31% Similarity=0.377 Sum_probs=119.6
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCccccc-----------
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA----------- 71 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~----------- 71 (438)
+|.|+||-||.-.+.+||++|++ .|++||..|..||||||.|+..||..++++|+++|+++-..+
T Consensus 72 DglTalhq~~id~~~e~v~~l~e----~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e 147 (527)
T KOG0505|consen 72 DGLTALHQACIDDNLEMVKFLVE----NGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAE 147 (527)
T ss_pred ccchhHHHHHhcccHHHHHHHHH----hcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCcccccc
Confidence 79999999999999999999999 799999999999999999999999999999999998643322
Q ss_pred ------------------------------------------------CCCCcHHHHHhhcccccCcHHHHHHHHhCCCC
Q 013706 72 ------------------------------------------------NNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD 103 (438)
Q Consensus 72 ------------------------------------------------~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~ 103 (438)
..|.|.||.|+ .+|..++..+|+++|.+
T Consensus 148 ~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAa----a~Gy~e~~~lLl~ag~~ 223 (527)
T KOG0505|consen 148 DEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAA----ANGYTEVAALLLQAGYS 223 (527)
T ss_pred CcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHH----hhhHHHHHHHHHHhccC
Confidence 26899999999 89999999999999999
Q ss_pred CcccCCCCCccccccccCCCchhHHHHHHhccchHHHHH
Q 013706 104 CSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 142 (438)
Q Consensus 104 ~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~~ 142 (438)
++.+|.+||||| |+++.++..+++++|..++++.....
T Consensus 224 ~~~~D~dgWtPl-HAAA~Wg~~~~~elL~~~ga~~d~~t 261 (527)
T KOG0505|consen 224 VNIKDYDGWTPL-HAAAHWGQEDACELLVEHGADMDAKT 261 (527)
T ss_pred cccccccCCCcc-cHHHHhhhHhHHHHHHHhhcccchhh
Confidence 999999999999 77777899999999999888766654
No 146
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.72 E-value=5.9e-17 Score=145.76 Aligned_cols=208 Identities=16% Similarity=0.229 Sum_probs=150.0
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706 158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 237 (438)
Q Consensus 158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 237 (438)
...|+.+++.+...+.+.+....+ +.-..++|+.|++||||.++||+.+. .+.....||+.+
T Consensus 200 ~~~F~~~v~~S~~mk~~v~qA~k~--------------AmlDAPLLI~GeTGTGKdLlAkaCH~----~S~R~~~pFlal 261 (511)
T COG3283 200 VSGFEQIVAVSPKMKHVVEQAQKL--------------AMLDAPLLITGETGTGKDLLAKACHL----ASPRHSKPFLAL 261 (511)
T ss_pred ccchHHHhhccHHHHHHHHHHHHh--------------hccCCCeEEecCCCchHHHHHHHHhh----cCcccCCCeeEe
Confidence 346888888887766666554433 22346799999999999999999987 566677899999
Q ss_pred eccccc-----ccccccch--HHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC----------
Q 013706 238 QRTDLV-----GEFVGHTG--PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG---------- 300 (438)
Q Consensus 238 ~~~~~~-----~~~~g~~~--~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~---------- 300 (438)
+|+.+. ++++|+.. .-....|+.|.+|.+|+|||..+++.- ..+||+++.+|
T Consensus 262 NCA~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIgEmSp~l-----------QaKLLRFL~DGtFRRVGee~E 330 (511)
T COG3283 262 NCASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEMSPRL-----------QAKLLRFLNDGTFRRVGEDHE 330 (511)
T ss_pred ecCCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhhhcCHHH-----------HHHHHHHhcCCceeecCCcce
Confidence 998754 45777755 445578999999999999999999844 48999999863
Q ss_pred ---CEEEEEecCChhHHHHhhh--CcCccCCC-CcceeCCCCCH--HHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706 301 ---KVVVIFAGYSEPMKRVIAS--NEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 372 (438)
Q Consensus 301 ---~v~vi~~~~~~~~~~~~~~--~p~l~~R~-~~~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~ 372 (438)
+|.||++|..+-.+..... ...|..|+ -..+++|++-. +++..+.+.++.+.... .+ ...+.++.+.+
T Consensus 331 v~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~e---lg-~p~pkl~~~~~ 406 (511)
T COG3283 331 VHVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDE---LG-VPRPKLAADLL 406 (511)
T ss_pred EEEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHH---hC-CCCCccCHHHH
Confidence 4789999876655433111 01222344 22444555442 66777777777665431 12 23467899999
Q ss_pred HHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 373 AALIEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
..+.++.| +||.|++.|++.+|....
T Consensus 407 ~~L~~y~W------pGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 407 TVLTRYAW------PGNVRQLKNAIYRALTLL 432 (511)
T ss_pred HHHHHcCC------CccHHHHHHHHHHHHHHh
Confidence 99999999 999999999999998753
No 147
>PHA02798 ankyrin-like protein; Provisional
Probab=99.72 E-value=3e-17 Score=164.60 Aligned_cols=135 Identities=23% Similarity=0.215 Sum_probs=96.1
Q ss_pred CCCcHHHHHHHcC---CHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCC---HHHHHHHHHCCCCccccc-CCCC
Q 013706 3 MAQTPLHVSAGYN---KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGC---NEAAKLLLAHGAFIEAKA-NNGM 75 (438)
Q Consensus 3 ~g~tpLh~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~---~~~v~~Ll~~g~~~~~~~-~~g~ 75 (438)
.|+||||+|+..+ +.+++++|++ .|++++..|..|.||||+|+..++ .+++++|+++|++++.++ ..|.
T Consensus 108 ~G~TpLh~a~~~~~~~~~~iv~~Ll~----~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~ 183 (489)
T PHA02798 108 DGETPLYCLLSNGYINNLEILLFMIE----NGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKY 183 (489)
T ss_pred CcCcHHHHHHHcCCcChHHHHHHHHH----cCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCC
Confidence 5777777777764 6777777777 577777777777777777777776 777777777777777764 4567
Q ss_pred cHHHHHhhcccccCcHHHHHHHHhCCCC---------------------------------------CcccCCCCCcccc
Q 013706 76 TPLHLSVWYSIRSEDYATVKTLLEYNAD---------------------------------------CSAKDNEGKTPLD 116 (438)
Q Consensus 76 t~L~~A~~~~~~~~~~~~~~~Ll~~ga~---------------------------------------~~~~d~~g~t~l~ 116 (438)
||||.++..+...++.+++++|+++|++ ++.+|..|+|||
T Consensus 184 t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL- 262 (489)
T PHA02798 184 DTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPL- 262 (489)
T ss_pred cHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHH-
Confidence 7777766432233456666666665543 444667899999
Q ss_pred ccccCCCchhHHHHHHhccchHHHHH
Q 013706 117 HLSNGPGSAKLRELLLWHSEEQRKRR 142 (438)
Q Consensus 117 ~~a~~~~~~~~~~lL~~~~~~~~~~~ 142 (438)
|.|+..++.+++++|+..|++.....
T Consensus 263 ~~A~~~~~~~~v~~LL~~GAdin~~d 288 (489)
T PHA02798 263 YYSVSHNNRKIFEYLLQLGGDINIIT 288 (489)
T ss_pred HHHHHcCcHHHHHHHHHcCCcccccC
Confidence 66666788899999999998866543
No 148
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=1.4e-16 Score=158.16 Aligned_cols=187 Identities=19% Similarity=0.252 Sum_probs=128.6
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC------
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------ 232 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~------ 232 (438)
..|++++|++.+++.|...+.. .+-+..+||+||||||||++|+++|+.+.........
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~---------------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~ 77 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQE---------------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCE 77 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccH
Confidence 4689999999999988886431 1235678999999999999999999988642211111
Q ss_pred -----------CEEEeecccccccccccchHHHHHH---HHH----ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706 233 -----------RVTEVQRTDLVGEFVGHTGPKTRRR---IKE----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 294 (438)
Q Consensus 233 -----------~~~~~~~~~~~~~~~g~~~~~~~~~---~~~----a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll 294 (438)
.++++++..- . .-..++.+ +.. ....||||||+|.|.. ..++.|+
T Consensus 78 sC~~i~~g~hpDv~eId~a~~----~--~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~-----------~a~naLL 140 (624)
T PRK14959 78 QCRKVTQGMHVDVVEIDGASN----R--GIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR-----------EAFNALL 140 (624)
T ss_pred HHHHHhcCCCCceEEEecccc----c--CHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH-----------HHHHHHH
Confidence 1333332210 0 11222332 221 2347999999999975 4458999
Q ss_pred hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706 295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 372 (438)
Q Consensus 295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~ 372 (438)
..|++ ..+++|++++.... + .+.+++|+ .+|+|++++.+++..+++..+.++. ..++.+++
T Consensus 141 k~LEEP~~~~ifILaTt~~~k--l---l~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~eg-----------i~id~eal 203 (624)
T PRK14959 141 KTLEEPPARVTFVLATTEPHK--F---PVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREG-----------VDYDPAAV 203 (624)
T ss_pred HHhhccCCCEEEEEecCChhh--h---hHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99986 56777776554322 2 45678898 7899999999999999998887642 34677787
Q ss_pred HHHHHHHhhHhhhccccccchHHHHHHHH
Q 013706 373 AALIEKETTEKQRREMNGGLVDPMLVNAR 401 (438)
Q Consensus 373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~ 401 (438)
..++... .|+.|.+.++++++.
T Consensus 204 ~lIA~~s-------~GdlR~Al~lLeqll 225 (624)
T PRK14959 204 RLIARRA-------AGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHHHc-------CCCHHHHHHHHHHHH
Confidence 7777754 577788888887654
No 149
>PRK04195 replication factor C large subunit; Provisional
Probab=99.72 E-value=1.7e-16 Score=157.87 Aligned_cols=185 Identities=19% Similarity=0.266 Sum_probs=127.3
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..+++++|++.+++++.+++.... ...+++++||+||||||||++|+++|++++. .+++++
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~------------~g~~~~~lLL~GppG~GKTtla~ala~el~~-------~~ieln 71 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWL------------KGKPKKALLLYGPPGVGKTSLAHALANDYGW-------EVIELN 71 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHh------------cCCCCCeEEEECCCCCCHHHHHHHHHHHcCC-------CEEEEc
Confidence 468899999999999999865432 1124678999999999999999999998864 778888
Q ss_pred cccccccccccchHHHHHHHHH---------ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecC
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKE---------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY 309 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~---------a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~ 309 (438)
+++.... ..+...+.. ....+|+|||+|.+..... ...++.|+..++.....+|++++
T Consensus 72 asd~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d-------~~~~~aL~~~l~~~~~~iIli~n 138 (482)
T PRK04195 72 ASDQRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED-------RGGARAILELIKKAKQPIILTAN 138 (482)
T ss_pred ccccccH------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc-------hhHHHHHHHHHHcCCCCEEEecc
Confidence 7764321 112222211 1357999999999976321 13346677777765444444433
Q ss_pred ChhHHHHhhhCc-CccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccc
Q 013706 310 SEPMKRVIASNE-GFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM 388 (438)
Q Consensus 310 ~~~~~~~~~~~p-~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (438)
... . + .+ .+++|+ ..|.|++|+.+++..+++..+.++. ..++++++..++... .|
T Consensus 139 ~~~-~-~---~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~eg-----------i~i~~eaL~~Ia~~s-------~G 194 (482)
T PRK04195 139 DPY-D-P---SLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEG-----------IECDDEALKEIAERS-------GG 194 (482)
T ss_pred Ccc-c-c---chhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHc-------CC
Confidence 221 1 1 33 566665 8899999999999999999987653 346778888888765 45
Q ss_pred cccchHHHHHH
Q 013706 389 NGGLVDPMLVN 399 (438)
Q Consensus 389 n~~~l~~~~~~ 399 (438)
+.|.+.+.++.
T Consensus 195 DlR~ain~Lq~ 205 (482)
T PRK04195 195 DLRSAINDLQA 205 (482)
T ss_pred CHHHHHHHHHH
Confidence 55555555554
No 150
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.72 E-value=9.9e-17 Score=165.91 Aligned_cols=186 Identities=19% Similarity=0.212 Sum_probs=131.3
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCc-eEEecCCCCCHHHHHHHHHHHHHHcCCcC-------
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGILP------- 230 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~~------- 230 (438)
..|++|+|++.+++.|...+.. ....| +||+||+|||||++|++||+.|.+.....
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~----------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDS----------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHh----------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 4799999999999998887441 23345 79999999999999999999996421110
Q ss_pred ------------CCCEEEeecccccccccccchHHHHHHHHH-------ccCcEEEEeCcccccCCCCCCCchhHHHHHH
Q 013706 231 ------------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALE 291 (438)
Q Consensus 231 ------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~il~iDEid~l~~~~~~~~~~~~~~~~~ 291 (438)
...+++++..+.. .-..++.+.+. .+..|+||||+|.|.. ...|
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~~------~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-----------~a~N 138 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASHG------GVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-----------QGFN 138 (824)
T ss_pred HHHHHHHcCCCCCCcEEEecccccC------CHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-----------HHHH
Confidence 1123333322110 11233333322 2447999999999986 4459
Q ss_pred HHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccH
Q 013706 292 EIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSM 369 (438)
Q Consensus 292 ~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~ 369 (438)
.||..|++ ..++||++++.. +.+ .+.|++|+ .+++|..++.+++.++|+..++++. ..++.
T Consensus 139 aLLK~LEEpP~~~~fIl~tt~~--~kL---l~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EG-----------v~id~ 201 (824)
T PRK07764 139 ALLKIVEEPPEHLKFIFATTEP--DKV---IGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEG-----------VPVEP 201 (824)
T ss_pred HHHHHHhCCCCCeEEEEEeCCh--hhh---hHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcC-----------CCCCH
Confidence 99999997 667777776433 333 56789998 8999999999999999999887753 33567
Q ss_pred HHHHHHHHHHhhHhhhccccccchHHHHHHHH
Q 013706 370 DAIAALIEKETTEKQRREMNGGLVDPMLVNAR 401 (438)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~ 401 (438)
+++..++... .|+.|.+.+++++.+
T Consensus 202 eal~lLa~~s-------gGdlR~Al~eLEKLi 226 (824)
T PRK07764 202 GVLPLVIRAG-------GGSVRDSLSVLDQLL 226 (824)
T ss_pred HHHHHHHHHc-------CCCHHHHHHHHHHHH
Confidence 7777777655 577788888888766
No 151
>PHA02795 ankyrin-like protein; Provisional
Probab=99.71 E-value=3.6e-17 Score=156.04 Aligned_cols=125 Identities=19% Similarity=0.110 Sum_probs=78.7
Q ss_pred CcHHHHHHHcCCHHHHHHHhcCCCCCCcc-cccc-----cCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHH
Q 013706 5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVE-LEAQ-----NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPL 78 (438)
Q Consensus 5 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~-----d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L 78 (438)
.||||.|+..|+.+++++|+++ |++ .+.. +..+.|++|.|+..++.+++++|+++|+++|.+|..|.|||
T Consensus 150 ~t~lh~A~~~~~~eIVk~Lls~----Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpL 225 (437)
T PHA02795 150 LNAYFRGICKKESSVVEFILNC----GIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLL 225 (437)
T ss_pred CCHHHHHHHcCcHHHHHHHHhc----CCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHH
Confidence 4555555555555555555552 221 1111 12245566666666666777777777777777777788888
Q ss_pred HHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCC-------chhHHHHHHhccch
Q 013706 79 HLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG-------SAKLRELLLWHSEE 137 (438)
Q Consensus 79 ~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~-------~~~~~~lL~~~~~~ 137 (438)
|+|+ ..|+.+++++|+++|++++.+|..|+||||+++..+. +.+++++|+..+++
T Consensus 226 h~Aa----~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gad 287 (437)
T PHA02795 226 YRAI----YAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLS 287 (437)
T ss_pred HHHH----HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCC
Confidence 8887 6777788888888888888888888888844444332 34677777766654
No 152
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.1e-16 Score=145.52 Aligned_cols=198 Identities=19% Similarity=0.370 Sum_probs=142.0
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc-cccc-chHHHHHHHHH-------ccCcEEEE
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGH-TGPKTRRRIKE-------AEGGILFV 268 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~-~~~~~~~~~~~-------a~~~il~i 268 (438)
...||||.||+|+|||++|+.||+.++. ||..++|..+... |+|+ .+.-+.+++.. |+.||+||
T Consensus 225 eKSNvLllGPtGsGKTllaqTLAr~ldV-------PfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVfl 297 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQTLARVLDV-------PFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFL 297 (564)
T ss_pred ecccEEEECCCCCchhHHHHHHHHHhCC-------CeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEE
Confidence 4579999999999999999999999988 9999999998765 8998 45556666544 46699999
Q ss_pred eCcccccCCCCCC--C-chhHHHHHHHHHhhccC-----------------------CCEEEEEecCChhHHHHhhhC--
Q 013706 269 DEAYRLIPMQKAD--D-KDYGIEALEEIMSVMDG-----------------------GKVVVIFAGYSEPMKRVIASN-- 320 (438)
Q Consensus 269 DEid~l~~~~~~~--~-~~~~~~~~~~ll~~~~~-----------------------~~v~vi~~~~~~~~~~~~~~~-- 320 (438)
||+|++..+..+- . +-.+..+...||.++++ .+|.+|+.+--..++.++...
T Consensus 298 DEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~ 377 (564)
T KOG0745|consen 298 DEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLD 377 (564)
T ss_pred ehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhc
Confidence 9999999654422 1 22456788999999986 135666655322233222111
Q ss_pred -------------------------------------------------cCccCCCCcceeCCCCCHHHHHHHHH---HH
Q 013706 321 -------------------------------------------------EGFCRRVTKFFHFNDFNSEELAKILH---IK 348 (438)
Q Consensus 321 -------------------------------------------------p~l~~R~~~~i~~~~~~~~e~~~il~---~~ 348 (438)
|.|..||+..+.|..++..++.+++. ..
T Consensus 378 d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPkna 457 (564)
T KOG0745|consen 378 DKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNA 457 (564)
T ss_pred chhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhh
Confidence 88999999999999999999999882 22
Q ss_pred Hhccccccccccc-cccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccc
Q 013706 349 MNNQTEDSLLYGF-KLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRL 408 (438)
Q Consensus 349 l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~ 408 (438)
|-++.+. .++. .+...++.+++..+++... .+...+|.|+.++|++...+..-+
T Consensus 458 L~~Qyk~--lf~~~nV~L~fTe~Al~~IAq~Al----~r~TGARgLRsIlE~~Lleamfev 512 (564)
T KOG0745|consen 458 LGKQYKK--LFGMDNVELHFTEKALEAIAQLAL----KRKTGARGLRSILESLLLEAMFEV 512 (564)
T ss_pred HHHHHHH--HhccCCeeEEecHHHHHHHHHHHH----hhccchHHHHHHHHHHHhhhcccC
Confidence 2222111 1222 3445678889988887654 334557999999999998875444
No 153
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=1.9e-16 Score=157.80 Aligned_cols=188 Identities=19% Similarity=0.219 Sum_probs=133.7
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCc-eEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC----
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGILPTDR---- 233 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~~~~~---- 233 (438)
..|++++|++.+++.+...+.. ....| +||+||||||||++|+++|+.+.........+
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~----------------~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C 76 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQ----------------QRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVC 76 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHc----------------CCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 4789999999999988876431 23344 68999999999999999999986432211112
Q ss_pred -------------EEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHH
Q 013706 234 -------------VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEI 293 (438)
Q Consensus 234 -------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~l 293 (438)
+++++++. ...-..++.+++.+ +..|+||||+|.|.. .+.|.|
T Consensus 77 ~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-----------~a~naL 139 (527)
T PRK14969 77 SACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-----------SAFNAM 139 (527)
T ss_pred HHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-----------HHHHHH
Confidence 22222211 11223455665544 237999999999975 455899
Q ss_pred HhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHH
Q 013706 294 MSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA 371 (438)
Q Consensus 294 l~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 371 (438)
|..+++ +.+++|++|+... .+ .+.+++|+ ..++|++++.+++.+.+...++++. ..++.++
T Consensus 140 LK~LEepp~~~~fIL~t~d~~--ki---l~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~eg-----------i~~~~~a 202 (527)
T PRK14969 140 LKTLEEPPEHVKFILATTDPQ--KI---PVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQEN-----------IPFDATA 202 (527)
T ss_pred HHHHhCCCCCEEEEEEeCChh--hC---chhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcC-----------CCCCHHH
Confidence 999998 5677777765432 22 45688898 9999999999999999999887642 2356677
Q ss_pred HHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706 372 IAALIEKETTEKQRREMNGGLVDPMLVNAREN 403 (438)
Q Consensus 372 ~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~ 403 (438)
+..++... .|+.|.+.++++++...
T Consensus 203 l~~la~~s-------~Gslr~al~lldqai~~ 227 (527)
T PRK14969 203 LQLLARAA-------AGSMRDALSLLDQAIAY 227 (527)
T ss_pred HHHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence 77777654 67788899999888654
No 154
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.71 E-value=1e-15 Score=149.63 Aligned_cols=228 Identities=14% Similarity=0.121 Sum_probs=146.5
Q ss_pred hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706 162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 241 (438)
Q Consensus 162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 241 (438)
+.+.|.+...++|...+.... ....+.+++++||||||||++++.+++.+...+ ....++.+++..
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~------------~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~--~~~~~v~in~~~ 95 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPAL------------RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA--VKVVYVYINCQI 95 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHh------------CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEECCc
Confidence 557788877777776654321 123567899999999999999999999885433 123566777653
Q ss_pred c----------cccccc-------cchHHH-HHHH---HHc-cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC
Q 013706 242 L----------VGEFVG-------HTGPKT-RRRI---KEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG 299 (438)
Q Consensus 242 ~----------~~~~~g-------~~~~~~-~~~~---~~a-~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~ 299 (438)
. ..++.+ .+...+ ..+. ... .+.||+|||+|.+..... .+.+..|+..++.
T Consensus 96 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~-------~~~l~~l~~~~~~ 168 (394)
T PRK00411 96 DRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG-------NDVLYSLLRAHEE 168 (394)
T ss_pred CCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC-------chHHHHHHHhhhc
Confidence 2 122222 111111 2222 211 237999999999982211 1456777766653
Q ss_pred ---CCEEEEEecCChhHHHHhhhCcCccCCC-CcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHH
Q 013706 300 ---GKVVVIFAGYSEPMKRVIASNEGFCRRV-TKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAAL 375 (438)
Q Consensus 300 ---~~v~vi~~~~~~~~~~~~~~~p~l~~R~-~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (438)
.++.+|++++....... .+|.+.+|| ...|.|++|+.+++.+|++..+... +. ...++++++..+
T Consensus 169 ~~~~~v~vI~i~~~~~~~~~--l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~--------~~-~~~~~~~~l~~i 237 (394)
T PRK00411 169 YPGARIGVIGISSDLTFLYI--LDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEG--------FY-PGVVDDEVLDLI 237 (394)
T ss_pred cCCCeEEEEEEECCcchhhh--cCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhh--------cc-cCCCCHhHHHHH
Confidence 36777887765544433 277788887 5789999999999999999888542 11 123566666666
Q ss_pred HHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706 376 IEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 434 (438)
Q Consensus 376 ~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~ 434 (438)
.+...+ ..|+.|.+.+++..|...+..+ +..+|+.+|+.+|++.+.
T Consensus 238 ~~~~~~----~~Gd~r~a~~ll~~a~~~a~~~---------~~~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 238 ADLTAR----EHGDARVAIDLLRRAGLIAERE---------GSRKVTEEDVRKAYEKSE 283 (394)
T ss_pred HHHHHH----hcCcHHHHHHHHHHHHHHHHHc---------CCCCcCHHHHHHHHHHHH
Confidence 554421 2566777778888887766322 235799999999998764
No 155
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.71 E-value=1.8e-17 Score=148.29 Aligned_cols=124 Identities=30% Similarity=0.385 Sum_probs=83.1
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHc-----CCHHHHHHHHHCCCCccccc-CCCC
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKN-----GCNEAAKLLLAHGAFIEAKA-NNGM 75 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~-----g~~~~v~~Ll~~g~~~~~~~-~~g~ 75 (438)
++|+|+||||+.++++++|+.||+. .-+++|.+|+.|+||+|+++.. .+..+|.-|...| |+|++. ..|+
T Consensus 266 sNGNTALHYsVSHaNF~VV~~LLDS---gvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQ 341 (452)
T KOG0514|consen 266 SNGNTALHYAVSHANFDVVSILLDS---GVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQ 341 (452)
T ss_pred CCCCeeeeeeecccchHHHHHHhcc---CcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhhcc
Confidence 5899999999999999999999994 3456777777777776666542 2345555555443 455542 3466
Q ss_pred cHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhc
Q 013706 76 TPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134 (438)
Q Consensus 76 t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~ 134 (438)
|+|++|+ .+|+.++++.||..|+|+|+.|.+|-|+| ++|+.+|+.+++.+|+..
T Consensus 342 TALMLAV----SHGr~d~vk~LLacgAdVNiQDdDGSTAL-MCA~EHGhkEivklLLA~ 395 (452)
T KOG0514|consen 342 TALMLAV----SHGRVDMVKALLACGADVNIQDDDGSTAL-MCAAEHGHKEIVKLLLAV 395 (452)
T ss_pred hhhhhhh----hcCcHHHHHHHHHccCCCccccCCccHHH-hhhhhhChHHHHHHHhcc
Confidence 6666666 66666666666666666666666666666 666666666666666544
No 156
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.71 E-value=8.9e-16 Score=148.50 Aligned_cols=229 Identities=19% Similarity=0.162 Sum_probs=143.5
Q ss_pred hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCc--CCCCEEEeec
Q 013706 162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL--PTDRVTEVQR 239 (438)
Q Consensus 162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~--~~~~~~~~~~ 239 (438)
+++.|.+...+.|...+.... ....+.+++++||||||||++++.+++.+...... ....++.+++
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~------------~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPIL------------RGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHH------------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 468899988888877755331 12356789999999999999999999987532110 0125666666
Q ss_pred cccc----------cccc--cc-------c-hHHHHHHHHH---c-cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHh
Q 013706 240 TDLV----------GEFV--GH-------T-GPKTRRRIKE---A-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS 295 (438)
Q Consensus 240 ~~~~----------~~~~--g~-------~-~~~~~~~~~~---a-~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~ 295 (438)
.... .++. |. + ......+++. . +..||+|||+|.+....+ .++..|+.
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~--------~~L~~l~~ 154 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDD--------DLLYQLSR 154 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCc--------HHHHhHhc
Confidence 4322 1121 21 1 1112223332 2 346899999999984322 45667766
Q ss_pred hc--c---CCCEEEEEecCChhHHHHhhhCcCccCCC-CcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccH
Q 013706 296 VM--D---GGKVVVIFAGYSEPMKRVIASNEGFCRRV-TKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSM 369 (438)
Q Consensus 296 ~~--~---~~~v~vi~~~~~~~~~~~~~~~p~l~~R~-~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~ 369 (438)
.. . +..+.+|++++...+.. ..++.+.+|| +..+.|++|+.+|+.+|++..+.... . ...+++
T Consensus 155 ~~~~~~~~~~~v~lI~i~n~~~~~~--~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~--------~-~~~~~~ 223 (365)
T TIGR02928 155 ARSNGDLDNAKVGVIGISNDLKFRE--NLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAF--------Y-DGVLDD 223 (365)
T ss_pred cccccCCCCCeEEEEEEECCcchHh--hcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhc--------c-CCCCCh
Confidence 62 2 25677777765543322 1278888898 47899999999999999999886311 0 112455
Q ss_pred HHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706 370 DAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 434 (438)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~ 434 (438)
+++..+..... ...|+.|.+.++++.|...+..+ ....|+.+|+..|++.+.
T Consensus 224 ~~l~~i~~~~~----~~~Gd~R~al~~l~~a~~~a~~~---------~~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 224 GVIPLCAALAA----QEHGDARKAIDLLRVAGEIAERE---------GAERVTEDHVEKAQEKIE 275 (365)
T ss_pred hHHHHHHHHHH----HhcCCHHHHHHHHHHHHHHHHHc---------CCCCCCHHHHHHHHHHHH
Confidence 55544433221 11477888888888888766322 235688999998887663
No 157
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.71 E-value=4.8e-17 Score=159.45 Aligned_cols=132 Identities=30% Similarity=0.400 Sum_probs=116.5
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcc------------cccccCCCChHHHHHHHcCCHHHHHHHHHCCCCccc
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE------------LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEA 69 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~ 69 (438)
..|.||||.|+..|++++++.+|+.+.+ .++ +|..|++|.||||+||+.|+.+++..|+..|++++.
T Consensus 223 n~~~~pLhlAve~g~~e~lk~~L~n~~~-~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~ 301 (929)
T KOG0510|consen 223 NEKATPLHLAVEGGDIEMLKMCLQNGKK-IADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINS 301 (929)
T ss_pred CCCCcchhhhhhcCCHHHHHHHHhCccc-cchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccc
Confidence 4689999999999999999999985332 222 566789999999999999999999999999999999
Q ss_pred ccCCCCcHHHHHhhcccccCcHHHHHHHHh-C-CCCCcccCCCCCccccccccCCCchhHHHHHHhccchHH
Q 013706 70 KANNGMTPLHLSVWYSIRSEDYATVKTLLE-Y-NADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 139 (438)
Q Consensus 70 ~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~-~-ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~ 139 (438)
++.++.||||.|+ +.|++++|+-||+ . ....+..|..|.||| |++.+.++..++++|+..|+...
T Consensus 302 kn~d~~spLH~AA----~yg~~ntv~rLL~~~~~rllne~D~~g~tpL-Hlaa~~gH~~v~qlLl~~GA~~~ 368 (929)
T KOG0510|consen 302 KNKDEESPLHFAA----IYGRINTVERLLQESDTRLLNESDLHGMTPL-HLAAKSGHDRVVQLLLNKGALFL 368 (929)
T ss_pred cCCCCCCchHHHH----HcccHHHHHHHHhCcCccccccccccCCCch-hhhhhcCHHHHHHHHHhcChhhh
Confidence 9999999999999 7899999999998 4 356677899999999 77778899999999999888765
No 158
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.70 E-value=4.7e-16 Score=164.15 Aligned_cols=216 Identities=19% Similarity=0.288 Sum_probs=151.1
Q ss_pred hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706 162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 241 (438)
Q Consensus 162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 241 (438)
..++|++.+.+.+.+.+.... .+...+..+...+||+||||||||++|+++|+.+... ..+++.++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~-------~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~----~~~~i~~d~s~ 633 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSR-------AGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD----EDAMVRIDMSE 633 (852)
T ss_pred cccCCChHHHHHHHHHHHHHh-------ccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC----CCcEEEEechh
Confidence 458899888888887654331 2222222344569999999999999999999987532 23777777665
Q ss_pred ccc------------cccccch-HHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC--------
Q 013706 242 LVG------------EFVGHTG-PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------- 300 (438)
Q Consensus 242 ~~~------------~~~g~~~-~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------- 300 (438)
+.. .|+|..+ ..+...+.....+|||||||+++.+ .+.+.|++.|+++
T Consensus 634 ~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~-----------~v~~~Ll~~l~~g~l~d~~g~ 702 (852)
T TIGR03346 634 YMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHP-----------DVFNVLLQVLDDGRLTDGQGR 702 (852)
T ss_pred hcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCH-----------HHHHHHHHHHhcCceecCCCe
Confidence 322 1344432 3455556666678999999999987 5559999999753
Q ss_pred -----CEEEEEecCChhH--HH-------------H---h--hhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccc
Q 013706 301 -----KVVVIFAGYSEPM--KR-------------V---I--ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTED 355 (438)
Q Consensus 301 -----~v~vi~~~~~~~~--~~-------------~---~--~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~ 355 (438)
+.+||++++...- .. + + .-.|.|..|++.++.|.+++.+++.+|+...+.....+
T Consensus 703 ~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~ 782 (852)
T TIGR03346 703 TVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKR 782 (852)
T ss_pred EEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHH
Confidence 2457777664111 00 0 0 01388999999999999999999999999988865443
Q ss_pred cccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhh
Q 013706 356 SLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD 405 (438)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~ 405 (438)
....+ +...++++++..++.+.| ..++|+|.|++++++.+....
T Consensus 783 l~~~~--~~l~i~~~a~~~L~~~~~----~~~~gaR~L~~~i~~~i~~~l 826 (852)
T TIGR03346 783 LAERK--ITLELSDAALDFLAEAGY----DPVYGARPLKRAIQREIENPL 826 (852)
T ss_pred HHHCC--CeecCCHHHHHHHHHhCC----CCCCCchhHHHHHHHHHHHHH
Confidence 22223 346789999999999765 136889999999999886644
No 159
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.70 E-value=5.8e-17 Score=169.24 Aligned_cols=128 Identities=30% Similarity=0.373 Sum_probs=62.9
Q ss_pred CCcHHHHHHHc-CCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 4 AQTPLHVSAGY-NKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 4 g~tpLh~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
|+||||+|+.. ++.++++.|++ .|+++|.+|..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus 341 g~TpLh~A~~~~~~~~iv~lLl~----~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~ 416 (682)
T PHA02876 341 YITPLHQASTLDRNKDIVITLLE----LGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFAL 416 (682)
T ss_pred CCcHHHHHHHhCCcHHHHHHHHH----cCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHH
Confidence 34444444432 23444444444 34455555555555555555555555555555555555555555555555554
Q ss_pred hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchH
Q 013706 83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQ 138 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~ 138 (438)
. ..+...++++|+++|++++.+|..|+||||+++..+...+++++|+..|++.
T Consensus 417 ~---~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~ 469 (682)
T PHA02876 417 C---GTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADV 469 (682)
T ss_pred H---cCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCC
Confidence 1 1222334555555555555555555555533333233445555555555443
No 160
>PHA02946 ankyin-like protein; Provisional
Probab=99.70 E-value=7.9e-17 Score=158.53 Aligned_cols=130 Identities=19% Similarity=0.251 Sum_probs=94.5
Q ss_pred CCCCcHHHHHHHcC--CHHHHHHHhcCCCCCCccccc-ccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHH
Q 013706 2 QMAQTPLHVSAGYN--KAEIVKSLLEWPGNDKVELEA-QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPL 78 (438)
Q Consensus 2 ~~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L 78 (438)
..|+||||+|+..+ +.+++++|++ .|++++. .|..|.|||| ||..|+.+++++|++.|++++.+|..|+|||
T Consensus 103 ~~g~TpLh~A~~~~~~~~e~v~lLl~----~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~L 177 (446)
T PHA02946 103 KQHKTPLYYLSGTDDEVIERINLLVQ----YGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHI 177 (446)
T ss_pred CCCCCHHHHHHHcCCchHHHHHHHHH----cCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHH
Confidence 36888888888765 4788888888 6777774 5777888886 5666778888888888888888888888888
Q ss_pred HHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCC-CchhHHHHHHhccchHH
Q 013706 79 HLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP-GSAKLRELLLWHSEEQR 139 (438)
Q Consensus 79 ~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~-~~~~~~~lL~~~~~~~~ 139 (438)
|+|+.. .+++.+++++|+++|++++.+|.+|+||||+++..+ +..+++++|.. +++..
T Consensus 178 h~A~~~--~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin 236 (446)
T PHA02946 178 HRHLMS--DNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVN 236 (446)
T ss_pred HHHHHh--cCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCC
Confidence 887632 345567788888888888888888888885544432 35567777664 44443
No 161
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=1.2e-15 Score=149.92 Aligned_cols=190 Identities=19% Similarity=0.205 Sum_probs=134.7
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcC--------
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 230 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~-------- 230 (438)
..|++++|++.+++.+...+.. ...+..+|||||||+|||++|+++++.+.......
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~---------------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDN---------------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHc---------------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 4799999999999988877431 11233459999999999999999999885322111
Q ss_pred ---------CCCEEEeecccccccccccchHHHHHHHHH-------ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706 231 ---------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 294 (438)
Q Consensus 231 ---------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll 294 (438)
...++++++++- ..-..++.+++. +...|++|||+|.|.. .+.+.||
T Consensus 76 ~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~-----------~A~NALL 138 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK-----------EAFNALL 138 (535)
T ss_pred HHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-----------HHHHHHH
Confidence 112233322210 012456666554 2347999999999976 4558999
Q ss_pred hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706 295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 372 (438)
Q Consensus 295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~ 372 (438)
..|++ ..+++|++++.. ..+ .|++++|+ ..++|.+++.+++...+...+.++. ..++++++
T Consensus 139 K~LEEpp~~t~FIL~ttd~--~kL---~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EG-----------i~i~~~Al 201 (535)
T PRK08451 139 KTLEEPPSYVKFILATTDP--LKL---PATILSRT-QHFRFKQIPQNSIISHLKTILEKEG-----------VSYEPEAL 201 (535)
T ss_pred HHHhhcCCceEEEEEECCh--hhC---chHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99987 456666665432 333 68899996 8999999999999999999888753 33567888
Q ss_pred HHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 373 AALIEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
..++... .|+.|.+.++++++....
T Consensus 202 ~~Ia~~s-------~GdlR~alnlLdqai~~~ 226 (535)
T PRK08451 202 EILARSG-------NGSLRDTLTLLDQAIIYC 226 (535)
T ss_pred HHHHHHc-------CCcHHHHHHHHHHHHHhc
Confidence 8777754 577888999998877654
No 162
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.69 E-value=4.4e-16 Score=156.99 Aligned_cols=190 Identities=21% Similarity=0.208 Sum_probs=134.6
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC-------
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT------- 231 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~------- 231 (438)
..|++++|++.+++.|...+.. ...+..+||+||||||||++|+++|+.+........
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~---------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~ 77 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDT---------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCP 77 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccH
Confidence 4799999999999998876431 113344699999999999999999999864321111
Q ss_pred ----------CCEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706 232 ----------DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 294 (438)
Q Consensus 232 ----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll 294 (438)
..++++++.+- ..-..++.+.+.+ +..|+||||+|.|.. ...|.|+
T Consensus 78 ~c~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~-----------~a~naLL 140 (576)
T PRK14965 78 PCVEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST-----------NAFNALL 140 (576)
T ss_pred HHHHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH-----------HHHHHHH
Confidence 12333333211 1123444544432 347999999999985 3459999
Q ss_pred hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706 295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 372 (438)
Q Consensus 295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~ 372 (438)
..|++ ..+++|++|+.. ..+ .+++++|+ ..++|.+++.+++...+...+.++. ..++.+++
T Consensus 141 k~LEepp~~~~fIl~t~~~--~kl---~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~eg-----------i~i~~~al 203 (576)
T PRK14965 141 KTLEEPPPHVKFIFATTEP--HKV---PITILSRC-QRFDFRRIPLQKIVDRLRYIADQEG-----------ISISDAAL 203 (576)
T ss_pred HHHHcCCCCeEEEEEeCCh--hhh---hHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhC-----------CCCCHHHH
Confidence 99987 567777766433 333 67789998 8999999999999999998888753 34567888
Q ss_pred HHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 373 AALIEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
..++... .|+.|.+.+.++++....
T Consensus 204 ~~la~~a-------~G~lr~al~~Ldqliay~ 228 (576)
T PRK14965 204 ALVARKG-------DGSMRDSLSTLDQVLAFC 228 (576)
T ss_pred HHHHHHc-------CCCHHHHHHHHHHHHHhc
Confidence 8877765 577888888888776554
No 163
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.69 E-value=8e-16 Score=138.38 Aligned_cols=180 Identities=15% Similarity=0.173 Sum_probs=122.3
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHH-HccCcEEEEeCcccccC
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK-EAEGGILFVDEAYRLIP 276 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~a~~~il~iDEid~l~~ 276 (438)
...+++|+||||||||++|+++++.+...+ ..++.+++.++... +. ...+.+|||||+|.+.+
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~----~~~~~i~~~~~~~~------------~~~~~~~~~liiDdi~~l~~ 104 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGG----RNARYLDAASPLLA------------FDFDPEAELYAVDDVERLDD 104 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCC----CcEEEEehHHhHHH------------HhhcccCCEEEEeChhhcCc
Confidence 456899999999999999999999875433 25666666554321 11 12457999999998865
Q ss_pred CCCCCCchhHHHHHHHHHhhcc-CCCEEEEEecCChhHHHHhhhCcCccCCC--CcceeCCCCCHHHHHHHHHHHHhccc
Q 013706 277 MQKADDKDYGIEALEEIMSVMD-GGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQT 353 (438)
Q Consensus 277 ~~~~~~~~~~~~~~~~ll~~~~-~~~v~vi~~~~~~~~~~~~~~~p~l~~R~--~~~i~~~~~~~~e~~~il~~~l~~~~ 353 (438)
..+ ..+..++..+. .+..++|++++..+... ...+.|++|| ...+++++|+.++...++.....+..
T Consensus 105 ~~~--------~~L~~~~~~~~~~~~~~vl~~~~~~~~~~--~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~ 174 (227)
T PRK08903 105 AQQ--------IALFNLFNRVRAHGQGALLVAGPAAPLAL--PLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERG 174 (227)
T ss_pred hHH--------HHHHHHHHHHHHcCCcEEEEeCCCCHHhC--CCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 333 22333333332 34444555555444321 1146777788 57999999999988888887765432
Q ss_pred cccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHH
Q 013706 354 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 431 (438)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~ 431 (438)
..++++++..+.. .| +||.++++++++.....+ ......||...+++.+.
T Consensus 175 -----------v~l~~~al~~L~~-~~------~gn~~~l~~~l~~l~~~~----------~~~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 175 -----------LQLADEVPDYLLT-HF------RRDMPSLMALLDALDRYS----------LEQKRPVTLPLLREMLA 224 (227)
T ss_pred -----------CCCCHHHHHHHHH-hc------cCCHHHHHHHHHHHHHHH----------HHhCCCCCHHHHHHHHh
Confidence 4467889999988 56 999999999999865433 12235688888877765
No 164
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=1.1e-15 Score=153.27 Aligned_cols=189 Identities=20% Similarity=0.222 Sum_probs=134.5
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC-C-----
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT-D----- 232 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~-~----- 232 (438)
..|++++|++.+++.|...+.. .+.+..+||+||+|||||++|+++|+.+...+.... +
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~---------------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~ 85 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFET---------------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL 85 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc
Confidence 4789999999999998886431 124556999999999999999999999875432111 1
Q ss_pred ----------------CEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHH
Q 013706 233 ----------------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEA 289 (438)
Q Consensus 233 ----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~ 289 (438)
.++++++++ .. .-..++.+++.+ ...|+||||+|.|.. ..
T Consensus 86 cg~c~~C~~i~~g~h~Dv~e~~a~s----~~--gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-----------~a 148 (598)
T PRK09111 86 CGVGEHCQAIMEGRHVDVLEMDAAS----HT--GVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-----------AA 148 (598)
T ss_pred CcccHHHHHHhcCCCCceEEecccc----cC--CHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-----------HH
Confidence 122332221 01 123455665544 347999999999975 44
Q ss_pred HHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccc
Q 013706 290 LEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSC 367 (438)
Q Consensus 290 ~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~ 367 (438)
.+.|+..|++ ..+++|++++.. +.+ .+.+++|+ ..+.|..++.+++..+++..+.++. ..+
T Consensus 149 ~naLLKtLEePp~~~~fIl~tte~--~kl---l~tI~SRc-q~~~f~~l~~~el~~~L~~i~~keg-----------i~i 211 (598)
T PRK09111 149 FNALLKTLEEPPPHVKFIFATTEI--RKV---PVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEG-----------VEV 211 (598)
T ss_pred HHHHHHHHHhCCCCeEEEEEeCCh--hhh---hHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcC-----------CCC
Confidence 5899999987 556666665432 233 46688898 7899999999999999999988653 345
Q ss_pred cHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706 368 SMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 403 (438)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~ 403 (438)
+.+++..++... .|+.|.+.+.+++++..
T Consensus 212 ~~eAl~lIa~~a-------~Gdlr~al~~Ldkli~~ 240 (598)
T PRK09111 212 EDEALALIARAA-------EGSVRDGLSLLDQAIAH 240 (598)
T ss_pred CHHHHHHHHHHc-------CCCHHHHHHHHHHHHhh
Confidence 778888877765 67788888888877543
No 165
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.68 E-value=7.4e-17 Score=161.16 Aligned_cols=206 Identities=19% Similarity=0.226 Sum_probs=148.2
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 239 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 239 (438)
.+.+++|.....+.+.+.+..+ .....++++.|++|||||++|++++.. +.....+|+.++|
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~--------------~~~~~~vli~Ge~GtGK~~lA~~ih~~----s~~~~~~~i~i~c 197 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRL--------------SRSSISVLINGESGTGKELVAHALHRH----SPRAKAPFIALNM 197 (469)
T ss_pred ccccceecCHHHHHHHHHHHHH--------------hccCCeEEEEeCCCCcHHHHHHHHHhc----CCCCCCCeEeeeC
Confidence 3556888877766666654432 235678999999999999999999984 4445679999999
Q ss_pred ccccc-----cccccchH-------HHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-------
Q 013706 240 TDLVG-----EFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------- 300 (438)
Q Consensus 240 ~~~~~-----~~~g~~~~-------~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------- 300 (438)
+.+.. ..+|+... .....|+.+.+|+|||||++.+.+..| ..|+..++++
T Consensus 198 ~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q-----------~~L~~~l~~~~~~~~~~ 266 (469)
T PRK10923 198 AAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQ-----------TRLLRVLADGQFYRVGG 266 (469)
T ss_pred CCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHH-----------HHHHHHHhcCcEEeCCC
Confidence 87532 34554321 112346778899999999999987544 7888888753
Q ss_pred ------CEEEEEecCChhHHHHhh--hCcCccCCC-CcceeCCCCCH--HHHHHHHHHHHhccccccccccccccccccH
Q 013706 301 ------KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSM 369 (438)
Q Consensus 301 ------~v~vi~~~~~~~~~~~~~--~~p~l~~R~-~~~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~ 369 (438)
++.+|++++.+....+.. -.+.|..|| ...|.+|++.. +++..++..++.+.... ++.. ...+++
T Consensus 267 ~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~---~~~~-~~~~~~ 342 (469)
T PRK10923 267 YAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARE---LGVE-AKLLHP 342 (469)
T ss_pred CCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHH---cCCC-CCCcCH
Confidence 247777776655432210 125566677 67888888874 88999999999876431 1111 235899
Q ss_pred HHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 370 DAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
+++..+..+.| |||.|+|+++++++...+
T Consensus 343 ~a~~~L~~~~w------pgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 343 ETEAALTRLAW------PGNVRQLENTCRWLTVMA 371 (469)
T ss_pred HHHHHHHhCCC------CChHHHHHHHHHHHHHhC
Confidence 99999999999 999999999999998764
No 166
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.68 E-value=1.7e-16 Score=159.43 Aligned_cols=136 Identities=20% Similarity=0.277 Sum_probs=109.7
Q ss_pred CCCCcHHHHHHHc---CCHHHHHHHhcCCCCCCccc-ccccCCCChHHHHHHHc--CCHHHHHHHHHCCCCccc-ccCCC
Q 013706 2 QMAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVEL-EAQNMYGETPLHMAAKN--GCNEAAKLLLAHGAFIEA-KANNG 74 (438)
Q Consensus 2 ~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~-~~~d~~g~t~L~~A~~~--g~~~~v~~Ll~~g~~~~~-~~~~g 74 (438)
..|+||||.|+.. |+.+++++|++ .|+++ +.+|..|+||||+|+.. ++.+++++|+++|++++. .+..|
T Consensus 106 ~~g~tpL~~a~~~~~~~~~eiv~~Ll~----~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g 181 (494)
T PHA02989 106 FNGVSPIVCFIYNSNINNCDMLRFLLS----KGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYG 181 (494)
T ss_pred CCCCcHHHHHHHhcccCcHHHHHHHHH----CCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccC
Confidence 3689999988765 67899999998 78899 78899999999998764 688999999999999988 67889
Q ss_pred CcHHHHHhhcccccCcHHHHHHHHhCCCCCcc--------------------------------------cCCCCCcccc
Q 013706 75 MTPLHLSVWYSIRSEDYATVKTLLEYNADCSA--------------------------------------KDNEGKTPLD 116 (438)
Q Consensus 75 ~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~--------------------------------------~d~~g~t~l~ 116 (438)
.||||+|+..+...++.+++++|+++|++++. +|..|+|||
T Consensus 182 ~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL- 260 (494)
T PHA02989 182 LTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPL- 260 (494)
T ss_pred CChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHH-
Confidence 99999987544345678888888888876553 455699999
Q ss_pred ccccCCCchhHHHHHHhccchHHHHH
Q 013706 117 HLSNGPGSAKLRELLLWHSEEQRKRR 142 (438)
Q Consensus 117 ~~a~~~~~~~~~~lL~~~~~~~~~~~ 142 (438)
|.|+..++.+++++|+..|++.....
T Consensus 261 ~~Aa~~~~~~~v~~LL~~Gadin~~d 286 (494)
T PHA02989 261 LISAKVDNYEAFNYLLKLGDDIYNVS 286 (494)
T ss_pred HHHHHhcCHHHHHHHHHcCCCccccC
Confidence 55556778889999999888766553
No 167
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=4.5e-16 Score=153.83 Aligned_cols=189 Identities=18% Similarity=0.234 Sum_probs=131.1
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC-------
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT------- 231 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~------- 231 (438)
..|++++|++.+++.+...+.. ...+..+||+||||||||++|+++|+.+........
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~---------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~ 77 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILN---------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCS 77 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 4689999999999888876431 123445899999999999999999999864332211
Q ss_pred ----------CCEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706 232 ----------DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 294 (438)
Q Consensus 232 ----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll 294 (438)
..++++++++. ..-..++.+++.+ ...|++|||+|.|.. .+.+.|+
T Consensus 78 sCr~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~-----------~A~NaLL 140 (605)
T PRK05896 78 VCESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST-----------SAWNALL 140 (605)
T ss_pred HHHHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH-----------HHHHHHH
Confidence 12333333211 1122344444332 347999999999965 3458999
Q ss_pred hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706 295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 372 (438)
Q Consensus 295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~ 372 (438)
..|++ ..+++|++++. ...+ .|++++|+ ..++|++++.+++...+...+.+.. ..++++++
T Consensus 141 KtLEEPp~~tvfIL~Tt~--~~KL---l~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~keg-----------i~Is~eal 203 (605)
T PRK05896 141 KTLEEPPKHVVFIFATTE--FQKI---PLTIISRC-QRYNFKKLNNSELQELLKSIAKKEK-----------IKIEDNAI 203 (605)
T ss_pred HHHHhCCCcEEEEEECCC--hHhh---hHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99986 45666666543 2333 67889998 7899999999999999999887642 33566777
Q ss_pred HHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706 373 AALIEKETTEKQRREMNGGLVDPMLVNAREN 403 (438)
Q Consensus 373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~ 403 (438)
..++... .|+.|.+.+.++.+...
T Consensus 204 ~~La~lS-------~GdlR~AlnlLekL~~y 227 (605)
T PRK05896 204 DKIADLA-------DGSLRDGLSILDQLSTF 227 (605)
T ss_pred HHHHHHc-------CCcHHHHHHHHHHHHhh
Confidence 7777654 57778888888876544
No 168
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.9e-15 Score=141.12 Aligned_cols=225 Identities=16% Similarity=0.191 Sum_probs=145.7
Q ss_pred hcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccc
Q 013706 164 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV 243 (438)
Q Consensus 164 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 243 (438)
+.+.+....++...+... +....|.++++|||||||||.+++.+.+++....... .++.++|....
T Consensus 19 l~~Re~ei~~l~~~l~~~------------~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~--~~~yINc~~~~ 84 (366)
T COG1474 19 LPHREEEINQLASFLAPA------------LRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANV--EVVYINCLELR 84 (366)
T ss_pred ccccHHHHHHHHHHHHHH------------hcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccC--ceEEEeeeeCC
Confidence 555665555555543322 2234677899999999999999999999997532211 16777775422
Q ss_pred cc----------c-----cccchHH----HHHHHHHc-cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC--C
Q 013706 244 GE----------F-----VGHTGPK----TRRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--K 301 (438)
Q Consensus 244 ~~----------~-----~g~~~~~----~~~~~~~a-~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~--~ 301 (438)
+. . .|-+... +.+.+..- ..-|++|||+|.|..+.+ +++..|+...+.. +
T Consensus 85 t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~--------~~LY~L~r~~~~~~~~ 156 (366)
T COG1474 85 TPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG--------EVLYSLLRAPGENKVK 156 (366)
T ss_pred CHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc--------hHHHHHHhhcccccee
Confidence 21 1 1111111 12222332 236899999999998665 6777777777654 4
Q ss_pred EEEEEecCChhHHHHhhhCcCccCCC-CcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHh
Q 013706 302 VVVIFAGYSEPMKRVIASNEGFCRRV-TKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET 380 (438)
Q Consensus 302 v~vi~~~~~~~~~~~~~~~p~l~~R~-~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (438)
+.+|+.++...+... .+|.+.+|| +..|.||+|+.+|+.+|++...+.. +. ...++++++.-.+ ...
T Consensus 157 v~vi~i~n~~~~~~~--ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~--------~~-~~~~~~~vl~lia-~~~ 224 (366)
T COG1474 157 VSIIAVSNDDKFLDY--LDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG--------FS-AGVIDDDVLKLIA-ALV 224 (366)
T ss_pred EEEEEEeccHHHHHH--hhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh--------cc-CCCcCccHHHHHH-HHH
Confidence 566666665554433 389999998 7789999999999999999988752 11 1223444443333 222
Q ss_pred hHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706 381 TEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 434 (438)
Q Consensus 381 ~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~ 434 (438)
++ ..|+.|....++..|.+.| +.+...+++.+++..|.+++.
T Consensus 225 a~---~~GDAR~aidilr~A~eiA---------e~~~~~~v~~~~v~~a~~~~~ 266 (366)
T COG1474 225 AA---ESGDARKAIDILRRAGEIA---------EREGSRKVSEDHVREAQEEIE 266 (366)
T ss_pred HH---cCccHHHHHHHHHHHHHHH---------HhhCCCCcCHHHHHHHHHHhh
Confidence 21 2457888889999998887 334557788888888865553
No 169
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.68 E-value=2.6e-15 Score=144.76 Aligned_cols=189 Identities=17% Similarity=0.240 Sum_probs=130.0
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcC--------
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 230 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~-------- 230 (438)
..|++++|++.+++.+.+.+.. ...+..+||+||||+|||++|+++++.+.......
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~---------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~ 75 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKN---------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECE 75 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 4789999999999988876431 12344689999999999999999999886431110
Q ss_pred ---------CCCEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706 231 ---------TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 294 (438)
Q Consensus 231 ---------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll 294 (438)
...++.+++.. ......++.+++.+ ...|++|||+|.+.. ...+.|+
T Consensus 76 ~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-----------~~~~~Ll 138 (355)
T TIGR02397 76 SCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-----------SAFNALL 138 (355)
T ss_pred HHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH-----------HHHHHHH
Confidence 11233333321 11222355555543 236999999998864 3458899
Q ss_pred hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706 295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 372 (438)
Q Consensus 295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~ 372 (438)
..+++ ..+++|++++.. ..+ .+++++|+ ..++|++|+.+++.+++..++++.. ..++++++
T Consensus 139 ~~le~~~~~~~lIl~~~~~--~~l---~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g-----------~~i~~~a~ 201 (355)
T TIGR02397 139 KTLEEPPEHVVFILATTEP--HKI---PATILSRC-QRFDFKRIPLEDIVERLKKILDKEG-----------IKIEDEAL 201 (355)
T ss_pred HHHhCCccceeEEEEeCCH--HHH---HHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99976 456666665332 233 56788898 7899999999999999999987642 23566777
Q ss_pred HHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706 373 AALIEKETTEKQRREMNGGLVDPMLVNAREN 403 (438)
Q Consensus 373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~ 403 (438)
..++... .|+.+.+.+.++++...
T Consensus 202 ~~l~~~~-------~g~~~~a~~~lekl~~~ 225 (355)
T TIGR02397 202 ELIARAA-------DGSLRDALSLLDQLISF 225 (355)
T ss_pred HHHHHHc-------CCChHHHHHHHHHHHhh
Confidence 7777654 56777788887776653
No 170
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.68 E-value=1.5e-16 Score=159.86 Aligned_cols=131 Identities=21% Similarity=0.257 Sum_probs=111.2
Q ss_pred CCCcHHHHHHH------cCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHc---CCHHHHHHHHHCCCCc-ccccC
Q 013706 3 MAQTPLHVSAG------YNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKN---GCNEAAKLLLAHGAFI-EAKAN 72 (438)
Q Consensus 3 ~g~tpLh~A~~------~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~-~~~~~ 72 (438)
.|.||||.|+. .++.++|++|++ .|+++|.+|..|+||||.|+.. ++.+++++|+++|+++ +.+|.
T Consensus 68 ~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~----~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~ 143 (494)
T PHA02989 68 YIETPLCAVLRNREITSNKIKKIVKLLLK----FGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNS 143 (494)
T ss_pred CCCCcHHHHHhccCcchhhHHHHHHHHHH----CCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCC
Confidence 47899999875 588999999999 7999999999999999988765 6799999999999999 89999
Q ss_pred CCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcc-cCCCCCccccccccC---CCchhHHHHHHhccchHH
Q 013706 73 NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSA-KDNEGKTPLDHLSNG---PGSAKLRELLLWHSEEQR 139 (438)
Q Consensus 73 ~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~-~d~~g~t~l~~~a~~---~~~~~~~~lL~~~~~~~~ 139 (438)
.|+||||+|+.. ..++.+++++|+++|++++. .+..|.||++.++.. .++.+++++|+..|++..
T Consensus 144 ~g~tpLh~a~~~--~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn 212 (494)
T PHA02989 144 RGYNLLHMYLES--FSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIE 212 (494)
T ss_pred CCCCHHHHHHHh--ccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCcc
Confidence 999999998732 34689999999999999998 688999999544322 347889999988876543
No 171
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.68 E-value=2.2e-16 Score=156.82 Aligned_cols=206 Identities=18% Similarity=0.197 Sum_probs=146.1
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 239 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 239 (438)
.+..++|.....+.+.+.+..+ .....+++++|++||||+++|++++... .....+|+.++|
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~--------------a~~~~~vli~Ge~GtGK~~lA~~ih~~s----~~~~~~~v~v~c 198 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKI--------------APSDITVLLLGESGTGKEVLARALHQLS----DRKDKRFVAINC 198 (445)
T ss_pred cccceeecCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCcCHHHHHHHHHHhC----CcCCCCeEEEEC
Confidence 3456788777766666654433 2345789999999999999999999843 334568999999
Q ss_pred ccccc-----cccccch-------HHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-------
Q 013706 240 TDLVG-----EFVGHTG-------PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------- 300 (438)
Q Consensus 240 ~~~~~-----~~~g~~~-------~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------- 300 (438)
+.+.. .++|+.. ......++.|.+|+|||||++.|.+..| ..|++.++++
T Consensus 199 ~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q-----------~~l~~~l~~~~~~~~~~ 267 (445)
T TIGR02915 199 AAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQ-----------AKLLRFLQERVIERLGG 267 (445)
T ss_pred CCCChHHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHH-----------HHHHHHHhhCeEEeCCC
Confidence 87532 2444321 1223456778999999999999987544 7888888653
Q ss_pred ------CEEEEEecCChhHHHHh--hhCcCccCCC-CcceeCCCCCH--HHHHHHHHHHHhccccccccccccc-ccccc
Q 013706 301 ------KVVVIFAGYSEPMKRVI--ASNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKL-HSSCS 368 (438)
Q Consensus 301 ------~v~vi~~~~~~~~~~~~--~~~p~l~~R~-~~~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~~-~~~~~ 368 (438)
++.+|++++.+....+. .-.+.|..|+ ...|.+|++.. +++..++..++.+... .+.. ...++
T Consensus 268 ~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~-----~~~~~~~~~~ 342 (445)
T TIGR02915 268 REEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFAR-----ELKRKTKGFT 342 (445)
T ss_pred CceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHH-----HhCCCCCCCC
Confidence 45778877666543221 1123455566 56777888864 7888899999887643 1221 24689
Q ss_pred HHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhh
Q 013706 369 MDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD 405 (438)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~ 405 (438)
++++..+..+.| |||.++|++++++|+..+.
T Consensus 343 ~~a~~~L~~~~w------pgNvreL~~~i~~a~~~~~ 373 (445)
T TIGR02915 343 DDALRALEAHAW------PGNVRELENKVKRAVIMAE 373 (445)
T ss_pred HHHHHHHHhCCC------CChHHHHHHHHHHHHHhCC
Confidence 999999999999 9999999999999987543
No 172
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.68 E-value=1.9e-15 Score=138.28 Aligned_cols=133 Identities=26% Similarity=0.294 Sum_probs=93.6
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecc------cccccccccchHHHH----------------
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT------DLVGEFVGHTGPKTR---------------- 255 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~------~~~~~~~g~~~~~~~---------------- 255 (438)
...+++|+||||||||++|+++|+.++. +++.+++. ++++.+.|.......
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~-------~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDR-------PVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQ 92 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCC-------CEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccce
Confidence 3568999999999999999999987654 67766553 444544443222111
Q ss_pred ----H-HHH-HccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC------------------CEEEEEecCCh
Q 013706 256 ----R-RIK-EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------------------KVVVIFAGYSE 311 (438)
Q Consensus 256 ----~-~~~-~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------------------~v~vi~~~~~~ 311 (438)
. ++. ...+++|+|||++.+.+ ++.+.|+..|+++ .+.+|+++|+.
T Consensus 93 ~~~~g~l~~A~~~g~~lllDEi~r~~~-----------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~ 161 (262)
T TIGR02640 93 NWVDNRLTLAVREGFTLVYDEFTRSKP-----------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPV 161 (262)
T ss_pred eecCchHHHHHHcCCEEEEcchhhCCH-----------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCc
Confidence 1 111 23568999999999876 4447888888652 34677777765
Q ss_pred hHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHH
Q 013706 312 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKM 349 (438)
Q Consensus 312 ~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l 349 (438)
........+++|++|| ..+.++.|+.++..+|++...
T Consensus 162 ~~~g~~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 162 EYAGVHETQDALLDRL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred cccceecccHHHHhhc-EEEECCCCCHHHHHHHHHHhh
Confidence 4433323378899999 789999999999999998765
No 173
>PHA02798 ankyrin-like protein; Provisional
Probab=99.68 E-value=1.6e-16 Score=159.32 Aligned_cols=131 Identities=21% Similarity=0.212 Sum_probs=78.3
Q ss_pred CCcHHHHHH--HcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHc-----CCHHHHHHHHHCCCCcccccCCCCc
Q 013706 4 AQTPLHVSA--GYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKN-----GCNEAAKLLLAHGAFIEAKANNGMT 76 (438)
Q Consensus 4 g~tpLh~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~-----g~~~~v~~Ll~~g~~~~~~~~~g~t 76 (438)
|.|+++.+. ..++.++|++|++ .|+++|..|..|.||||+++.+ ++.+++++|+++|+++|.+|..|.|
T Consensus 36 ~~~~~~~yl~~~~~~~~iv~~Ll~----~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~T 111 (489)
T PHA02798 36 EYSIFQKYLQRDSPSTDIVKLFIN----LGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGET 111 (489)
T ss_pred cchHHHHHHhCCCCCHHHHHHHHH----CCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCc
Confidence 445554333 2346667777776 5666676666677777666543 4566677777777777776666777
Q ss_pred HHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCC--chhHHHHHHhccchHH
Q 013706 77 PLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPG--SAKLRELLLWHSEEQR 139 (438)
Q Consensus 77 ~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~--~~~~~~lL~~~~~~~~ 139 (438)
|||+|+..+ ..++.+++++|+++|++++.+|.+|.||||+++..+. ..+++++|+..|++..
T Consensus 112 pLh~a~~~~-~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin 175 (489)
T PHA02798 112 PLYCLLSNG-YINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDIN 175 (489)
T ss_pred HHHHHHHcC-CcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcc
Confidence 777666210 0125666666776777777777777777633333221 2566666666665543
No 174
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.67 E-value=1.9e-16 Score=165.42 Aligned_cols=131 Identities=32% Similarity=0.400 Sum_probs=112.1
Q ss_pred CCCCcHHHHHHHcCCH-HHHHHHhcCCCCCCcccccccCCCChHHHHHHHcC-CHHHHHHHHHCCCCcccccCCCCcHHH
Q 013706 2 QMAQTPLHVSAGYNKA-EIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG-CNEAAKLLLAHGAFIEAKANNGMTPLH 79 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~-~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g-~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 79 (438)
..|+||||+|+..|+. +++++|++ .|++++.+|..|+||||+|+..| +.+++++|+..|++++.+|..|.||||
T Consensus 271 ~~g~TpLh~Aa~~~~~~~iv~lLl~----~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh 346 (682)
T PHA02876 271 DCKNTPLHHASQAPSLSRLVPKLLE----RGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLH 346 (682)
T ss_pred CCCCCHHHHHHhCCCHHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHH
Confidence 3689999999999986 58888888 68889999999999999999988 589999999999999999999999999
Q ss_pred HHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706 80 LSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK 140 (438)
Q Consensus 80 ~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~ 140 (438)
+|+. ..++.+++..|++.|++++..|..|.||| |.|+..++.+++++|+..+++...
T Consensus 347 ~A~~---~~~~~~iv~lLl~~gadin~~d~~G~TpL-h~Aa~~~~~~iv~~Ll~~gad~~~ 403 (682)
T PHA02876 347 QAST---LDRNKDIVITLLELGANVNARDYCDKTPI-HYAAVRNNVVIINTLLDYGADIEA 403 (682)
T ss_pred HHHH---hCCcHHHHHHHHHcCCCCccCCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCccc
Confidence 9983 24577888899999999999999999999 555556788889999888876554
No 175
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=1.6e-15 Score=151.57 Aligned_cols=189 Identities=17% Similarity=0.191 Sum_probs=133.2
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC-----
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR----- 233 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~----- 233 (438)
..|++++|++.+++.+...+.. ...+..+|||||||+|||++|+++|+.+.........+
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~---------------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~ 77 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIES---------------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS 77 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch
Confidence 4799999999999988887441 12344589999999999999999999986432111111
Q ss_pred ------------EEEeecccccccccccchHHHHHHHHH-------ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706 234 ------------VTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 294 (438)
Q Consensus 234 ------------~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll 294 (438)
++++++.. ...-..++.+.+. +...|++|||+|.+.. .+++.|+
T Consensus 78 ~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~-----------~a~naLL 140 (563)
T PRK06647 78 SCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN-----------SAFNALL 140 (563)
T ss_pred HHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH-----------HHHHHHH
Confidence 22222211 0112344444432 2447999999999975 4568999
Q ss_pred hhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHH
Q 013706 295 SVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAI 372 (438)
Q Consensus 295 ~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~ 372 (438)
..+++ ..+++|++++.. ..+ .+++++|+ ..++|.+++.+++..+++..+.+.. ..++++++
T Consensus 141 K~LEepp~~~vfI~~tte~--~kL---~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~eg-----------i~id~eAl 203 (563)
T PRK06647 141 KTIEEPPPYIVFIFATTEV--HKL---PATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQ-----------IKYEDEAL 203 (563)
T ss_pred HhhccCCCCEEEEEecCCh--HHh---HHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHH
Confidence 99997 567777776432 333 67889998 6899999999999999998887642 33577888
Q ss_pred HHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706 373 AALIEKETTEKQRREMNGGLVDPMLVNAREN 403 (438)
Q Consensus 373 ~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~ 403 (438)
..++... .|+.|.+.+.++++...
T Consensus 204 ~lLa~~s-------~GdlR~alslLdklis~ 227 (563)
T PRK06647 204 KWIAYKS-------TGSVRDAYTLFDQVVSF 227 (563)
T ss_pred HHHHHHc-------CCCHHHHHHHHHHHHhh
Confidence 8888765 67788899998877543
No 176
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.67 E-value=7.3e-16 Score=149.57 Aligned_cols=197 Identities=19% Similarity=0.205 Sum_probs=148.7
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
+.|++++|++.+.+.|...+..- +-....||.||.|||||++||.+|+.+++.......|+.++.
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~---------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~ 77 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENG---------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCI 77 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhC---------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhh
Confidence 57999999999999999874421 234568999999999999999999999865433334554443
Q ss_pred ccc-ccc----------cccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-
Q 013706 239 RTD-LVG----------EFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG- 299 (438)
Q Consensus 239 ~~~-~~~----------~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~- 299 (438)
... +.. ......-..++.+.++. +..|++|||+|.|+. .+.|.||.-+++
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~-----------~afNALLKTLEEP 146 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK-----------QAFNALLKTLEEP 146 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH-----------HHHHHHhcccccC
Confidence 321 100 00111345677777765 348999999999986 566999999998
Q ss_pred -CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHH
Q 013706 300 -GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK 378 (438)
Q Consensus 300 -~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (438)
..|++|+||+...-. .+.+++|+ .++.|...+.+++...+..++.++. ..++++++..+++.
T Consensus 147 P~hV~FIlATTe~~Ki-----p~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~-----------I~~e~~aL~~ia~~ 209 (515)
T COG2812 147 PSHVKFILATTEPQKI-----PNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEG-----------INIEEDALSLIARA 209 (515)
T ss_pred ccCeEEEEecCCcCcC-----chhhhhcc-ccccccCCCHHHHHHHHHHHHHhcC-----------CccCHHHHHHHHHH
Confidence 678888887654332 77889998 9999999999999999999999864 45677888888876
Q ss_pred HhhHhhhccccccchHHHHHHHHHHhh
Q 013706 379 ETTEKQRREMNGGLVDPMLVNARENLD 405 (438)
Q Consensus 379 ~~~~~~~~~~n~~~l~~~~~~a~~~~~ 405 (438)
. .|..|+..++++++.....
T Consensus 210 a-------~Gs~RDalslLDq~i~~~~ 229 (515)
T COG2812 210 A-------EGSLRDALSLLDQAIAFGE 229 (515)
T ss_pred c-------CCChhhHHHHHHHHHHccC
Confidence 5 5777999999999987643
No 177
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=1.9e-15 Score=152.41 Aligned_cols=194 Identities=19% Similarity=0.247 Sum_probs=129.9
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcC-CCCEEEe
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-TDRVTEV 237 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~-~~~~~~~ 237 (438)
..|++++|++.+++.++..+.. ...+..+||+||||||||++|+++|+.+....... ..++-.+
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~---------------~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C 79 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKS---------------NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQEC 79 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHH
Confidence 4799999999999988876431 11234469999999999999999999886532110 0111111
Q ss_pred ec-----cccc-ccccc-cchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CC
Q 013706 238 QR-----TDLV-GEFVG-HTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GK 301 (438)
Q Consensus 238 ~~-----~~~~-~~~~g-~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~ 301 (438)
.. .+++ ..-.+ .....++.+++.+ ...|++|||+|.|.. .+.+.|+..|++ ..
T Consensus 80 ~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~-----------~A~NALLKtLEEPP~~ 148 (725)
T PRK07133 80 IENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK-----------SAFNALLKTLEEPPKH 148 (725)
T ss_pred HHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH-----------HHHHHHHHHhhcCCCc
Confidence 00 0110 00001 1123355555443 347999999999875 456899999987 45
Q ss_pred EEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhh
Q 013706 302 VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETT 381 (438)
Q Consensus 302 v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (438)
+++|++|+.. ..+ .|++++|+ .+++|.+++.+++...+...+.+.. ..++.+++..++...
T Consensus 149 tifILaTte~--~KL---l~TI~SRc-q~ieF~~L~~eeI~~~L~~il~keg-----------I~id~eAl~~LA~lS-- 209 (725)
T PRK07133 149 VIFILATTEV--HKI---PLTILSRV-QRFNFRRISEDEIVSRLEFILEKEN-----------ISYEKNALKLIAKLS-- 209 (725)
T ss_pred eEEEEEcCCh--hhh---hHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHc--
Confidence 6777766432 233 67789998 7999999999999999998887642 234667777766654
Q ss_pred HhhhccccccchHHHHHHHHH
Q 013706 382 EKQRREMNGGLVDPMLVNARE 402 (438)
Q Consensus 382 ~~~~~~~n~~~l~~~~~~a~~ 402 (438)
.|+.|.+.++++++..
T Consensus 210 -----~GslR~AlslLekl~~ 225 (725)
T PRK07133 210 -----SGSLRDALSIAEQVSI 225 (725)
T ss_pred -----CCCHHHHHHHHHHHHH
Confidence 5777888888887653
No 178
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.67 E-value=1.6e-15 Score=143.60 Aligned_cols=179 Identities=20% Similarity=0.204 Sum_probs=112.1
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..+++++|++.+++.+..++.. ...+..++|+||||+|||++|+++++.+.. .++.++
T Consensus 18 ~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~~lll~G~~G~GKT~la~~l~~~~~~-------~~~~i~ 75 (316)
T PHA02544 18 STIDECILPAADKETFKSIVKK---------------GRIPNMLLHSPSPGTGKTTVAKALCNEVGA-------EVLFVN 75 (316)
T ss_pred CcHHHhcCcHHHHHHHHHHHhc---------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-------cceEec
Confidence 4789999999999998887431 123334555999999999999999997743 566777
Q ss_pred cccccccccccchHHHHHHHHH----ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHH
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKE----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMK 314 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~----a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~ 314 (438)
+++ +. +......+...... +...||||||+|.+... .....+..++.... +...+|++++.. .
T Consensus 76 ~~~--~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~-------~~~~~L~~~le~~~-~~~~~Ilt~n~~--~ 142 (316)
T PHA02544 76 GSD--CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA-------DAQRHLRSFMEAYS-KNCSFIITANNK--N 142 (316)
T ss_pred cCc--cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH-------HHHHHHHHHHHhcC-CCceEEEEcCCh--h
Confidence 665 11 11111112221111 24689999999988431 11233333333333 344555554432 2
Q ss_pred HHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHh
Q 013706 315 RVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET 380 (438)
Q Consensus 315 ~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (438)
.+ .|++++|| ..+.|+.|+.+++.++++.++........ .-...++++++..++...+
T Consensus 143 ~l---~~~l~sR~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~----~~~~~i~~~al~~l~~~~~ 200 (316)
T PHA02544 143 GI---IEPLRSRC-RVIDFGVPTKEEQIEMMKQMIVRCKGILE----AEGVEVDMKVLAALVKKNF 200 (316)
T ss_pred hc---hHHHHhhc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHhcC
Confidence 33 78899999 68999999999999888766554311000 1123457788888888765
No 179
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=3.2e-16 Score=146.44 Aligned_cols=173 Identities=14% Similarity=0.253 Sum_probs=124.4
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|+.++-..++|+.|.+=+... .++++.+.+.+..=.++.|||||||||||++.-|+|++|+. .+..++
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F---~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~y-------dIydLe 267 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDF---IKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNY-------DIYDLE 267 (457)
T ss_pred CCccccccChhHHHHHHHHHHHH---HhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCC-------ceEEee
Confidence 46777888888888877543322 24444455555555678999999999999999999999876 444444
Q ss_pred cccccccccccchHHHHHHHHHccC-cEEEEeCcccccCCCC--CCC--c---hhHHHHHHHHHhhccC------CCEEE
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEAEG-GILFVDEAYRLIPMQK--ADD--K---DYGIEALEEIMSVMDG------GKVVV 304 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a~~-~il~iDEid~l~~~~~--~~~--~---~~~~~~~~~ll~~~~~------~~v~v 304 (438)
-++. +... .++.++..+.+ +||+|.+||.-...+. ... . ..+.-.++.||..+|+ +.-++
T Consensus 268 Lt~v-----~~n~-dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIi 341 (457)
T KOG0743|consen 268 LTEV-----KLDS-DLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERII 341 (457)
T ss_pred eccc-----cCcH-HHHHHHHhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEE
Confidence 4333 2222 37888877765 9999999998865222 111 1 1233568899999997 35666
Q ss_pred EEecCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhcc
Q 013706 305 IFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQ 352 (438)
Q Consensus 305 i~~~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~ 352 (438)
|++||- .+++ ||||.| |+|.+|+++.-+.++...++++|+.-.
T Consensus 342 vFTTNh--~EkL---DPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~ 386 (457)
T KOG0743|consen 342 VFTTNH--KEKL---DPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIE 386 (457)
T ss_pred EEecCC--hhhc---CHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCC
Confidence 666443 3444 999999 999999999999999999999999763
No 180
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=2.3e-15 Score=147.32 Aligned_cols=188 Identities=18% Similarity=0.214 Sum_probs=129.3
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcC--------
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 230 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~-------- 230 (438)
..|++++|++.+++.+...+.. ...+..+|||||||+|||++|+++|+.+.......
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~---------------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c 78 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRF---------------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC 78 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence 5799999999999988876431 12345589999999999999999999886421110
Q ss_pred ----------CCCEEEeecccccccccccchHHHHHHHH-------HccCcEEEEeCcccccCCCCCCCchhHHHHHHHH
Q 013706 231 ----------TDRVTEVQRTDLVGEFVGHTGPKTRRRIK-------EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEI 293 (438)
Q Consensus 231 ----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~l 293 (438)
...++++++... .| -..++.+.+ .+...|+||||+|.+.. ...+.|
T Consensus 79 ~~C~~i~~~~~~d~~~i~g~~~----~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~-----------~~~n~L 141 (451)
T PRK06305 79 ASCKEISSGTSLDVLEIDGASH----RG--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK-----------EAFNSL 141 (451)
T ss_pred HHHHHHhcCCCCceEEeecccc----CC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH-----------HHHHHH
Confidence 112333332211 11 122222221 13458999999999975 345899
Q ss_pred HhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHH
Q 013706 294 MSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA 371 (438)
Q Consensus 294 l~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 371 (438)
+..|++ +.+++|++++.. ..+ .+++++|+ ..++|++++.+++...+...+++.. ..++.++
T Consensus 142 Lk~lEep~~~~~~Il~t~~~--~kl---~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg-----------~~i~~~a 204 (451)
T PRK06305 142 LKTLEEPPQHVKFFLATTEI--HKI---PGTILSRC-QKMHLKRIPEETIIDKLALIAKQEG-----------IETSREA 204 (451)
T ss_pred HHHhhcCCCCceEEEEeCCh--Hhc---chHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHH
Confidence 999987 566666665332 333 67889998 7899999999999999998887642 3357778
Q ss_pred HHHHHHHHhhHhhhccccccchHHHHHHHHH
Q 013706 372 IAALIEKETTEKQRREMNGGLVDPMLVNARE 402 (438)
Q Consensus 372 ~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~ 402 (438)
+..++... .|+.|.+.+.++....
T Consensus 205 l~~L~~~s-------~gdlr~a~~~Lekl~~ 228 (451)
T PRK06305 205 LLPIARAA-------QGSLRDAESLYDYVVG 228 (451)
T ss_pred HHHHHHHc-------CCCHHHHHHHHHHHHH
Confidence 88888765 5677778888776553
No 181
>PHA02730 ankyrin-like protein; Provisional
Probab=99.67 E-value=3.9e-16 Score=156.06 Aligned_cols=131 Identities=21% Similarity=0.131 Sum_probs=115.1
Q ss_pred CCCCcHHHHHHHcC---CHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcC--CHHHHHHHHHCCC--CcccccCCC
Q 013706 2 QMAQTPLHVSAGYN---KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNG--CNEAAKLLLAHGA--FIEAKANNG 74 (438)
Q Consensus 2 ~~g~tpLh~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g--~~~~v~~Ll~~g~--~~~~~~~~g 74 (438)
+.|+||||+|+..| +.++|++|++ +|++++.+|..|+||||+|+..+ +.+++++|++.|+ +++..+.-+
T Consensus 39 ~~G~TaLh~A~~~~~~~~~eivklLLs----~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~ 114 (672)
T PHA02730 39 RRGNNALHCYVSNKCDTDIKIVRLLLS----RGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNIN 114 (672)
T ss_pred CCCCcHHHHHHHcCCcCcHHHHHHHHh----CCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccC
Confidence 57999999999997 5999999999 79999999999999999999976 7999999999965 557788889
Q ss_pred CcHHHHHhhcccccCcHHHHHHHHh-CCCCCcccCC-----CCCccccccccCCCchhHHHHHHhccchHH
Q 013706 75 MTPLHLSVWYSIRSEDYATVKTLLE-YNADCSAKDN-----EGKTPLDHLSNGPGSAKLRELLLWHSEEQR 139 (438)
Q Consensus 75 ~t~L~~A~~~~~~~~~~~~~~~Ll~-~ga~~~~~d~-----~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~ 139 (438)
.+|||.++. ..+++.+++++|+. .+++++.... +|.+|+ +++...+..+++++|+..|++..
T Consensus 115 d~~l~~y~~--s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~-yl~~~~~~~eIvklLi~~g~~v~ 182 (672)
T PHA02730 115 DFDLYSYMS--SDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDI-YVTTPNPRPEVLLWLLKSECYST 182 (672)
T ss_pred CchHHHHHH--hcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhh-hHhcCCCchHHHHHHHHcCCccc
Confidence 999999883 24899999999996 6788886643 789999 88888999999999999998863
No 182
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=2.2e-15 Score=146.52 Aligned_cols=211 Identities=18% Similarity=0.145 Sum_probs=147.9
Q ss_pred CCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHc---cCcEEEEeCccc
Q 013706 197 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYR 273 (438)
Q Consensus 197 ~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~ 273 (438)
..+.++||+||+|+|||.|++++++++.... -..+..++|+.+.++.+....+-+..+|.++ .++||+||++|.
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~---~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDL---IAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWYAPSIIVLDDLDC 505 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhcccc---ceEEEEEechhccchhHHHHHHHHHHHHHHHHhhCCcEEEEcchhh
Confidence 3567899999999999999999999886422 2356677888887766666666777778776 579999999999
Q ss_pred ccCCCC--CCCchhHHHHHHHHHhhc-----c-CCCEEEEEecCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHH
Q 013706 274 LIPMQK--ADDKDYGIEALEEIMSVM-----D-GGKVVVIFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAK 343 (438)
Q Consensus 274 l~~~~~--~~~~~~~~~~~~~ll~~~-----~-~~~v~vi~~~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~ 343 (438)
+..... +++.......+..++..+ . +..+.||+++.. ...+ +|-|.+ +|+.++.++.|...+|.+
T Consensus 506 l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe--~qtl---~~~L~s~~~Fq~~~~L~ap~~~~R~~ 580 (952)
T KOG0735|consen 506 LASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQE--LQTL---NPLLVSPLLFQIVIALPAPAVTRRKE 580 (952)
T ss_pred hhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechh--hhhc---ChhhcCccceEEEEecCCcchhHHHH
Confidence 987322 223333334444444332 2 244677777432 3333 665554 889999999999999999
Q ss_pred HHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhh-ccccCCCCChhhhhhcc
Q 013706 344 ILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD-LRLSFDCLDTDELRTIT 422 (438)
Q Consensus 344 il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~-~r~~~~~~~~~~~~~i~ 422 (438)
||+..+.+.. ..+..+.+.-+...+- +....++.-.+++|...+. .|++.. ...+|
T Consensus 581 IL~~~~s~~~-----------~~~~~~dLd~ls~~TE------Gy~~~DL~ifVeRai~~a~leris~~------~kllt 637 (952)
T KOG0735|consen 581 ILTTIFSKNL-----------SDITMDDLDFLSVKTE------GYLATDLVIFVERAIHEAFLERISNG------PKLLT 637 (952)
T ss_pred HHHHHHHhhh-----------hhhhhHHHHHHHHhcC------CccchhHHHHHHHHHHHHHHHHhccC------cccch
Confidence 9999998743 2234444554444443 4446788999999987764 444422 13799
Q ss_pred HHHHHHHHHHHHhcCC
Q 013706 423 LEDLEAGLKLLLRLGI 438 (438)
Q Consensus 423 ~~d~~~a~~~~~~~~~ 438 (438)
.+||.++++.+-|+++
T Consensus 638 ke~f~ksL~~F~P~aL 653 (952)
T KOG0735|consen 638 KELFEKSLKDFVPLAL 653 (952)
T ss_pred HHHHHHHHHhcChHHh
Confidence 9999999999998753
No 183
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.66 E-value=3.4e-15 Score=157.25 Aligned_cols=222 Identities=17% Similarity=0.286 Sum_probs=151.2
Q ss_pred HHHHHH-hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCE
Q 013706 156 ELENEL-SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRV 234 (438)
Q Consensus 156 ~~~~~l-~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~ 234 (438)
.+...+ +.++|++.+++.+...+.... .+.....++...+||+||||||||++|+++|+.++.. ..++
T Consensus 502 ~l~~~L~~~v~GQ~~ai~~l~~~i~~~~-------~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~----~~~~ 570 (821)
T CHL00095 502 HMEETLHKRIIGQDEAVVAVSKAIRRAR-------VGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS----EDAM 570 (821)
T ss_pred HHHHHhcCcCcChHHHHHHHHHHHHHHh-------hcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC----ccce
Confidence 344444 458899998888877654322 2222222233458999999999999999999988532 2366
Q ss_pred EEeecccccc------------cccccch-HHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-
Q 013706 235 TEVQRTDLVG------------EFVGHTG-PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG- 300 (438)
Q Consensus 235 ~~~~~~~~~~------------~~~g~~~-~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~- 300 (438)
+.++.+++.. .|+|..+ ..+...+.....+||||||+|++.+ .+.+.|++.|+++
T Consensus 571 ~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~-----------~v~~~Llq~le~g~ 639 (821)
T CHL00095 571 IRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHP-----------DIFNLLLQILDDGR 639 (821)
T ss_pred EEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCH-----------HHHHHHHHHhccCc
Confidence 7776655421 2455433 3466666766779999999999987 5669999999863
Q ss_pred ------------CEEEEEecCChhH-----------------------HHH---h------hhCcCccCCCCcceeCCCC
Q 013706 301 ------------KVVVIFAGYSEPM-----------------------KRV---I------ASNEGFCRRVTKFFHFNDF 336 (438)
Q Consensus 301 ------------~v~vi~~~~~~~~-----------------------~~~---~------~~~p~l~~R~~~~i~~~~~ 336 (438)
+.++|++++-..- ..+ . .-.|+|++|+|.+|.|.++
T Consensus 640 ~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL 719 (821)
T CHL00095 640 LTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQL 719 (821)
T ss_pred eecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCC
Confidence 3467777652110 000 0 0137899999999999999
Q ss_pred CHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhh
Q 013706 337 NSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD 405 (438)
Q Consensus 337 ~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~ 405 (438)
+.+++.+|+...+.+...+.... .+...++++++..++...+ + ....+|.|+.++++.+....
T Consensus 720 ~~~~l~~Iv~~~l~~l~~rl~~~--~i~l~~~~~~~~~La~~~~--~--~~~GAR~l~r~i~~~i~~~l 782 (821)
T CHL00095 720 TKNDVWEIAEIMLKNLFKRLNEQ--GIQLEVTERIKTLLIEEGY--N--PLYGARPLRRAIMRLLEDPL 782 (821)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHC--CcEEEECHHHHHHHHHhcC--C--CCCChhhHHHHHHHHHHHHH
Confidence 99999999999998765443322 3446678899998888633 1 13446889888888776543
No 184
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=9.3e-16 Score=148.69 Aligned_cols=189 Identities=16% Similarity=0.230 Sum_probs=128.5
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcC--------
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 230 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~-------- 230 (438)
..|++++|++.+++.|...+.. ...+..+||+||||||||++|+++|+.+.......
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~---------------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~ 77 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRM---------------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV 77 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHh---------------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC
Confidence 4689999999999988876431 12334599999999999999999999996522100
Q ss_pred CCC-----------------EEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhH
Q 013706 231 TDR-----------------VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYG 286 (438)
Q Consensus 231 ~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~ 286 (438)
..+ ++++++.+. .....++.+.+.. ...|+||||+|.+..
T Consensus 78 ~~~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~---------- 141 (397)
T PRK14955 78 TEPCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI---------- 141 (397)
T ss_pred CCCCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH----------
Confidence 011 222222110 0123444444333 347999999999975
Q ss_pred HHHHHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhcccccccccccccc
Q 013706 287 IEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLH 364 (438)
Q Consensus 287 ~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~ 364 (438)
...+.|+..+++ ...++|++++. ...+ .+++++|+ ..++|++++.+++...+...+++..
T Consensus 142 -~~~~~LLk~LEep~~~t~~Il~t~~--~~kl---~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g----------- 203 (397)
T PRK14955 142 -AAFNAFLKTLEEPPPHAIFIFATTE--LHKI---PATIASRC-QRFNFKRIPLEEIQQQLQGICEAEG----------- 203 (397)
T ss_pred -HHHHHHHHHHhcCCCCeEEEEEeCC--hHHh---HHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcC-----------
Confidence 334788888887 34555555433 2333 56788888 6899999999999999998887642
Q ss_pred ccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706 365 SSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 403 (438)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~ 403 (438)
..++++++..++... .|+.+.+.+.++++...
T Consensus 204 ~~i~~~al~~l~~~s-------~g~lr~a~~~L~kl~~~ 235 (397)
T PRK14955 204 ISVDADALQLIGRKA-------QGSMRDAQSILDQVIAF 235 (397)
T ss_pred CCCCHHHHHHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence 346778888887765 57778888888776544
No 185
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.66 E-value=7.1e-15 Score=132.24 Aligned_cols=189 Identities=13% Similarity=0.175 Sum_probs=123.6
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHccCcEEEEeCcccccCC
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPM 277 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~ 277 (438)
...+++|+||||||||.+++++++.+...+. .+..++...... + .....+.++. ..+|||||++.+..+
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~----~v~y~~~~~~~~-~----~~~~~~~~~~--~dlliiDdi~~~~~~ 112 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGR----AVGYVPLDKRAW-F----VPEVLEGMEQ--LSLVCIDNIECIAGD 112 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCC----eEEEEEHHHHhh-h----hHHHHHHhhh--CCEEEEeChhhhcCC
Confidence 3458999999999999999999998865331 233333322211 0 1112222222 258999999998653
Q ss_pred CCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCC--CcceeCCCCCHHHHHHHHHHHHhccccc
Q 013706 278 QKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTED 355 (438)
Q Consensus 278 ~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~--~~~i~~~~~~~~e~~~il~~~l~~~~~~ 355 (438)
.+ ....+.+.+...++.++..+|++++..+.. +-...|.|++|+ ..++++.+|+.+++.+++++.....
T Consensus 113 ~~-----~~~~lf~l~n~~~e~g~~~li~ts~~~p~~-l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~--- 183 (235)
T PRK08084 113 EL-----WEMAIFDLYNRILESGRTRLLITGDRPPRQ-LNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLR--- 183 (235)
T ss_pred HH-----HHHHHHHHHHHHHHcCCCeEEEeCCCChHH-cCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHc---
Confidence 21 122344555555666665566666544433 212379999999 4899999999999999998766543
Q ss_pred cccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHH
Q 013706 356 SLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 431 (438)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~ 431 (438)
| ..++++++..++++. .++.|.+.+++++..+.+ + ...+.||.+.+++++.
T Consensus 184 ----~----~~l~~~v~~~L~~~~-------~~d~r~l~~~l~~l~~~~---l-------~~~~~it~~~~k~~l~ 234 (235)
T PRK08084 184 ----G----FELPEDVGRFLLKRL-------DREMRTLFMTLDQLDRAS---I-------TAQRKLTIPFVKEILK 234 (235)
T ss_pred ----C----CCCCHHHHHHHHHhh-------cCCHHHHHHHHHHHHHHH---H-------hcCCCCCHHHHHHHHc
Confidence 2 346788999999887 688999999999864332 0 1123477777776653
No 186
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.6e-15 Score=147.78 Aligned_cols=188 Identities=20% Similarity=0.258 Sum_probs=128.7
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCc-eEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC----
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGILPTDR---- 233 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~~~~~---- 233 (438)
..|++++|++.+.+.+...+.. ...+| +|||||||+|||++|+.+|+.+.........+
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~----------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c 76 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKL----------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC 76 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHc----------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc
Confidence 4789999999999988876431 23344 68999999999999999999886421111111
Q ss_pred -------------EEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHH
Q 013706 234 -------------VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEI 293 (438)
Q Consensus 234 -------------~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~l 293 (438)
+++++++.- ..-..++.+.+.+ ...|+||||+|.+.. ...+.|
T Consensus 77 ~nc~~i~~g~~~d~~eidaas~------~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~-----------~a~naL 139 (486)
T PRK14953 77 ENCVEIDKGSFPDLIEIDAASN------RGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK-----------EAFNAL 139 (486)
T ss_pred HHHHHHhcCCCCcEEEEeCccC------CCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH-----------HHHHHH
Confidence 222222110 1112234433332 347999999998864 345889
Q ss_pred HhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHH
Q 013706 294 MSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA 371 (438)
Q Consensus 294 l~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 371 (438)
+..+++ ..+++|++++. ...+ .+++++|+ ..+.|++++.+++..++...+++.. ..+++++
T Consensus 140 Lk~LEepp~~~v~Il~tt~--~~kl---~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~eg-----------i~id~~a 202 (486)
T PRK14953 140 LKTLEEPPPRTIFILCTTE--YDKI---PPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEK-----------IEYEEKA 202 (486)
T ss_pred HHHHhcCCCCeEEEEEECC--HHHH---HHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcC-----------CCCCHHH
Confidence 999987 35566665543 2233 56788888 6899999999999999999888642 2456778
Q ss_pred HHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706 372 IAALIEKETTEKQRREMNGGLVDPMLVNAREN 403 (438)
Q Consensus 372 ~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~ 403 (438)
+..++... .|+.|.+.+.++.+...
T Consensus 203 l~~La~~s-------~G~lr~al~~Ldkl~~~ 227 (486)
T PRK14953 203 LDLLAQAS-------EGGMRDAASLLDQASTY 227 (486)
T ss_pred HHHHHHHc-------CCCHHHHHHHHHHHHHh
Confidence 87777654 67888888998887644
No 187
>PHA02730 ankyrin-like protein; Provisional
Probab=99.66 E-value=4.1e-16 Score=155.87 Aligned_cols=127 Identities=20% Similarity=0.171 Sum_probs=106.0
Q ss_pred CCCcHHHHHHHcCC----HHHHHHHhcCCCCCCc--ccccccCCCChHHHH---HHHcC---------CHHHHHHHHHCC
Q 013706 3 MAQTPLHVSAGYNK----AEIVKSLLEWPGNDKV--ELEAQNMYGETPLHM---AAKNG---------CNEAAKLLLAHG 64 (438)
Q Consensus 3 ~g~tpLh~A~~~g~----~~~v~~Ll~~~~~~~~--~~~~~d~~g~t~L~~---A~~~g---------~~~~v~~Ll~~g 64 (438)
.|+||||+|+..++ .+++++|++ .|+ ++|.+|..|.||||. |...+ ..+++++|+.+|
T Consensus 377 ~G~TpLH~Aa~~nnn~i~~eIvelLIs----~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~G 452 (672)
T PHA02730 377 DNNYPLHDYFVNNNNIVDVNVVRFIVE----NNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYM 452 (672)
T ss_pred CCCcHHHHHHHHcCCcchHHHHHHHHH----cCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcc
Confidence 68999999998875 899999998 454 689999999999984 33232 135689999999
Q ss_pred CCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCC-CCCccccccccC-CCchhHHHHHHhccch
Q 013706 65 AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN-EGKTPLDHLSNG-PGSAKLRELLLWHSEE 137 (438)
Q Consensus 65 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~-~g~t~l~~~a~~-~~~~~~~~lL~~~~~~ 137 (438)
+++|.+|..|.||||+|+ ..++.+++++|+.+|++++.+|. .|.||+++++.. .++.+++++|+..++.
T Consensus 453 ADINakD~~G~TPLh~Aa----~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~ 523 (672)
T PHA02730 453 DDIDMIDNENKTLLYYAV----DVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPT 523 (672)
T ss_pred cchhccCCCCCCHHHHHH----HhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCC
Confidence 999999999999999999 77899999999999999999997 599999665542 3578899999887754
No 188
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.66 E-value=1.8e-16 Score=164.67 Aligned_cols=130 Identities=34% Similarity=0.448 Sum_probs=114.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCC-----------------------------CCcccccccCCCChHHHHHHHcCC
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGN-----------------------------DKVELEAQNMYGETPLHMAAKNGC 53 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~-----------------------------~~~~~~~~d~~g~t~L~~A~~~g~ 53 (438)
.|.||||.|+..||.++++.|++.... +|++++.++..|.||||.||..|+
T Consensus 473 ~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~ 552 (1143)
T KOG4177|consen 473 QGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGN 552 (1143)
T ss_pred ccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCC
Confidence 678888888888888888877763211 578899999999999999999999
Q ss_pred HHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHh
Q 013706 54 NEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLW 133 (438)
Q Consensus 54 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~ 133 (438)
.++|++|+++|+|++.+++.|+||||.|| ..|+.+++.+|+++|+++|..|.+|.||| +.+...+...++.++..
T Consensus 553 v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa----~~G~~~i~~LLlk~GA~vna~d~~g~TpL-~iA~~lg~~~~~k~l~~ 627 (1143)
T KOG4177|consen 553 VDLVKFLLEHGADVNAKDKLGYTPLHQAA----QQGHNDIAELLLKHGASVNAADLDGFTPL-HIAVRLGYLSVVKLLKV 627 (1143)
T ss_pred chHHHHhhhCCccccccCCCCCChhhHHH----HcChHHHHHHHHHcCCCCCcccccCcchh-HHHHHhcccchhhHHHh
Confidence 99999999999999999999999999999 88999999999999999999999999999 66777788888888887
Q ss_pred ccch
Q 013706 134 HSEE 137 (438)
Q Consensus 134 ~~~~ 137 (438)
.+..
T Consensus 628 ~~~~ 631 (1143)
T KOG4177|consen 628 VTAT 631 (1143)
T ss_pred ccCc
Confidence 7665
No 189
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=4e-15 Score=143.62 Aligned_cols=189 Identities=17% Similarity=0.225 Sum_probs=130.0
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC-----CC
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT-----DR 233 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~-----~~ 233 (438)
..|++++|++.+++.+.+.+.. ...+.++|||||||+|||++|+++++.+...+.... ..
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~---------------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~ 78 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIEN---------------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFN 78 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 4689999999998888876431 124568999999999999999999998865332111 11
Q ss_pred EEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEE
Q 013706 234 VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVV 304 (438)
Q Consensus 234 ~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~v 304 (438)
+++++... ......++.+++++ ...|+||||+|.+.. ..++.|+..+++ ...++
T Consensus 79 ~~~l~~~~------~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~-----------~~~~~ll~~le~~~~~~~~ 141 (367)
T PRK14970 79 IFELDAAS------NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS-----------AAFNAFLKTLEEPPAHAIF 141 (367)
T ss_pred eEEecccc------CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH-----------HHHHHHHHHHhCCCCceEE
Confidence 22222111 11224555666543 236999999998864 345788888876 33444
Q ss_pred EEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhh
Q 013706 305 IFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ 384 (438)
Q Consensus 305 i~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (438)
|++++.. ..+ .|++.+|+ ..++|++|+.+++..++...+.+.. ..++++++..++...
T Consensus 142 Il~~~~~--~kl---~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g-----------~~i~~~al~~l~~~~----- 199 (367)
T PRK14970 142 ILATTEK--HKI---IPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEG-----------IKFEDDALHIIAQKA----- 199 (367)
T ss_pred EEEeCCc--ccC---CHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHhC-----
Confidence 4444322 222 67888898 6799999999999999998887642 345778888888764
Q ss_pred hccccccchHHHHHHHHHH
Q 013706 385 RREMNGGLVDPMLVNAREN 403 (438)
Q Consensus 385 ~~~~n~~~l~~~~~~a~~~ 403 (438)
.|+.|.+.+.+++....
T Consensus 200 --~gdlr~~~~~lekl~~y 216 (367)
T PRK14970 200 --DGALRDALSIFDRVVTF 216 (367)
T ss_pred --CCCHHHHHHHHHHHHHh
Confidence 57778888888877643
No 190
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.65 E-value=1.3e-15 Score=144.62 Aligned_cols=188 Identities=27% Similarity=0.324 Sum_probs=123.4
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|++++|++.+++.+..++. ....++++|+||||||||++++++++.+...+. ...+++++
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~----------------~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~--~~~~i~~~ 75 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVK----------------EKNMPHLLFAGPPGTGKTTAALALARELYGEDW--RENFLELN 75 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHh----------------CCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc--ccceEEec
Confidence 468889999999988887743 123457999999999999999999998854332 23455665
Q ss_pred cccccccccccchHHHHHHHHH-----ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEec-CC
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKE-----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAG-YS 310 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~-----a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~-~~ 310 (438)
+++..+.. .....+...... +...+|+|||+|.+.... .+.|+..++. ....+|+++ +.
T Consensus 76 ~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~-----------~~~L~~~le~~~~~~~lIl~~~~~ 142 (319)
T PRK00440 76 ASDERGID--VIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDA-----------QQALRRTMEMYSQNTRFILSCNYS 142 (319)
T ss_pred cccccchH--HHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHH-----------HHHHHHHHhcCCCCCeEEEEeCCc
Confidence 44321100 000111111111 224699999999986422 2556666653 233344443 33
Q ss_pred hhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccc
Q 013706 311 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 390 (438)
Q Consensus 311 ~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 390 (438)
..+ .+++.+|+ ..++|++++.+++..++..++.+.. ..++++++..++... .|+.
T Consensus 143 ~~l------~~~l~sr~-~~~~~~~l~~~ei~~~l~~~~~~~~-----------~~i~~~al~~l~~~~-------~gd~ 197 (319)
T PRK00440 143 SKI------IDPIQSRC-AVFRFSPLKKEAVAERLRYIAENEG-----------IEITDDALEAIYYVS-------EGDM 197 (319)
T ss_pred ccc------chhHHHHh-heeeeCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHc-------CCCH
Confidence 222 45678888 5799999999999999999888642 346778888887754 5777
Q ss_pred cchHHHHHHHHH
Q 013706 391 GLVDPMLVNARE 402 (438)
Q Consensus 391 ~~l~~~~~~a~~ 402 (438)
|.+.+.++.+..
T Consensus 198 r~~~~~l~~~~~ 209 (319)
T PRK00440 198 RKAINALQAAAA 209 (319)
T ss_pred HHHHHHHHHHHH
Confidence 888888876654
No 191
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.65 E-value=3.8e-15 Score=156.16 Aligned_cols=224 Identities=17% Similarity=0.263 Sum_probs=150.2
Q ss_pred HHHHHHHH-hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC
Q 013706 154 MDELENEL-SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD 232 (438)
Q Consensus 154 ~~~~~~~l-~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~ 232 (438)
+..+...+ ..++|++.+.+.+.+.+... ..+...+.++...+||.||||||||.+|+++|+.++.. ..
T Consensus 557 l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~-------~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~----~~ 625 (852)
T TIGR03345 557 VLSLPDRLAERVIGQDHALEAIAERIRTA-------RAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG----EQ 625 (852)
T ss_pred HHHHHHHhcCeEcChHHHHHHHHHHHHHH-------hcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC----Cc
Confidence 34444555 46889999888888775432 22332222233358999999999999999999988532 23
Q ss_pred CEEEeeccccc---------c---cccccch-HHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC
Q 013706 233 RVTEVQRTDLV---------G---EFVGHTG-PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG 299 (438)
Q Consensus 233 ~~~~~~~~~~~---------~---~~~g~~~-~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~ 299 (438)
.++.++.+++. + .|+|+.+ ..+...+.....+||+||||+++.+ .+.+.|++.+++
T Consensus 626 ~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~-----------~v~~~Llq~ld~ 694 (852)
T TIGR03345 626 NLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHP-----------DVLELFYQVFDK 694 (852)
T ss_pred ceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCH-----------HHHHHHHHHhhc
Confidence 66677765432 2 2555432 3455667777789999999998886 556889999875
Q ss_pred C-------------CEEEEEecCChhH---------------HHH---h------hhCcCccCCCCcceeCCCCCHHHHH
Q 013706 300 G-------------KVVVIFAGYSEPM---------------KRV---I------ASNEGFCRRVTKFFHFNDFNSEELA 342 (438)
Q Consensus 300 ~-------------~v~vi~~~~~~~~---------------~~~---~------~~~p~l~~R~~~~i~~~~~~~~e~~ 342 (438)
+ +.++|+++|-..- +.+ . .-.|+|++|++ +|.|.+++.+++.
T Consensus 695 g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~ 773 (852)
T TIGR03345 695 GVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLA 773 (852)
T ss_pred ceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHH
Confidence 3 3467776542110 000 0 01489999996 8999999999999
Q ss_pred HHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhh
Q 013706 343 KILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD 405 (438)
Q Consensus 343 ~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~ 405 (438)
+|+...+.+...+... .+.+...++++++..++...+. ....+|.+++++++-.....
T Consensus 774 ~Iv~~~L~~l~~rl~~-~~gi~l~i~d~a~~~La~~g~~----~~~GAR~L~r~Ie~~i~~~l 831 (852)
T TIGR03345 774 AIVRLKLDRIARRLKE-NHGAELVYSEALVEHIVARCTE----VESGARNIDAILNQTLLPEL 831 (852)
T ss_pred HHHHHHHHHHHHHHHH-hcCceEEECHHHHHHHHHHcCC----CCCChHHHHHHHHHHHHHHH
Confidence 9999998875433211 1134456788999999887641 12357889999888666543
No 192
>PRK06893 DNA replication initiation factor; Validated
Probab=99.65 E-value=7.7e-15 Score=131.59 Aligned_cols=184 Identities=13% Similarity=0.184 Sum_probs=117.3
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHcc-CcEEEEeCcccccCCC
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE-GGILFVDEAYRLIPMQ 278 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~-~~il~iDEid~l~~~~ 278 (438)
+.++||||||||||.+++++|+++...+. +..++..+.... ...+.++... ..+|+|||++.+....
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~--~~~y~~~~~~~~----------~~~~~~~~~~~~dlLilDDi~~~~~~~ 107 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQR--TAIYIPLSKSQY----------FSPAVLENLEQQDLVCLDDLQAVIGNE 107 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCC--CeEEeeHHHhhh----------hhHHHHhhcccCCEEEEeChhhhcCCh
Confidence 46899999999999999999998865432 122333221111 1113334333 4699999999987533
Q ss_pred CCCCchhHHHHHHHHHh-hccCCCEEEEE-ecCChhHHHHhhhCcCccCCC--CcceeCCCCCHHHHHHHHHHHHhcccc
Q 013706 279 KADDKDYGIEALEEIMS-VMDGGKVVVIF-AGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTE 354 (438)
Q Consensus 279 ~~~~~~~~~~~~~~ll~-~~~~~~v~vi~-~~~~~~~~~~~~~~p~l~~R~--~~~i~~~~~~~~e~~~il~~~l~~~~~ 354 (438)
+ ....+-.++. ..+.+..++|+ ++........ ..|.|++|+ +..+++++|+.+++.+|+++......
T Consensus 108 ~------~~~~l~~l~n~~~~~~~~illits~~~p~~l~~--~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~- 178 (229)
T PRK06893 108 E------WELAIFDLFNRIKEQGKTLLLISADCSPHALSI--KLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG- 178 (229)
T ss_pred H------HHHHHHHHHHHHHHcCCcEEEEeCCCChHHccc--cchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC-
Confidence 2 1122333333 33444444444 4333332222 258899987 56899999999999999998886532
Q ss_pred ccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHH
Q 013706 355 DSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 431 (438)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~ 431 (438)
..++++++..++.+. .++.|.+.+++++..+.+ ..+.+.||...+++.+.
T Consensus 179 ----------l~l~~~v~~~L~~~~-------~~d~r~l~~~l~~l~~~~----------~~~~~~it~~~v~~~L~ 228 (229)
T PRK06893 179 ----------IELSDEVANFLLKRL-------DRDMHTLFDALDLLDKAS----------LQAQRKLTIPFVKEILG 228 (229)
T ss_pred ----------CCCCHHHHHHHHHhc-------cCCHHHHHHHHHHHHHHH----------HhcCCCCCHHHHHHHhc
Confidence 456788888888876 678889999988764322 01124588888877653
No 193
>PHA02795 ankyrin-like protein; Provisional
Probab=99.65 E-value=4.3e-16 Score=148.68 Aligned_cols=130 Identities=16% Similarity=0.057 Sum_probs=113.0
Q ss_pred CCCCcHHHHHHH--cCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccc------cCC
Q 013706 2 QMAQTPLHVSAG--YNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAK------ANN 73 (438)
Q Consensus 2 ~~g~tpLh~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~------~~~ 73 (438)
..++|+||+++. .|+.++|++|++ +|++++.. .+.||||.|+..++.+++++|+++|++..-. +..
T Consensus 114 ~~~~~~L~~~~~n~~n~~eiV~~LI~----~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~ 187 (437)
T PHA02795 114 NSVQDLLLYYLSNAYVEIDIVDFMVD----HGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKII 187 (437)
T ss_pred ccccHHHHHHHHhcCCCHHHHHHHHH----CCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhh
Confidence 457999999999 899999999999 79999885 4589999999999999999999999854222 234
Q ss_pred CCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHHH
Q 013706 74 GMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 142 (438)
Q Consensus 74 g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~~ 142 (438)
+.|++|.|+ ..++.+++++|+.+|++++.+|..|.||| |.|+..++.+++++|+..|++...+.
T Consensus 188 ~~t~l~~a~----~~~~~eIve~LIs~GADIN~kD~~G~TpL-h~Aa~~g~~eiVelLL~~GAdIN~~d 251 (437)
T PHA02795 188 QYTRGFLVD----EPTVLEIYKLCIPYIEDINQLDAGGRTLL-YRAIYAGYIDLVSWLLENGANVNAVM 251 (437)
T ss_pred ccchhHHHH----hcCHHHHHHHHHhCcCCcCcCCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence 778999888 78899999999999999999999999999 66666889999999999998876554
No 194
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.65 E-value=3.4e-16 Score=131.95 Aligned_cols=96 Identities=24% Similarity=0.333 Sum_probs=88.2
Q ss_pred CCCCcHHHHHHHcCCHH---HHHHHhcCCCCCCcccccccC-CCChHHHHHHHcCCHHHHHHHHH-CCCCcccccCCCCc
Q 013706 2 QMAQTPLHVSAGYNKAE---IVKSLLEWPGNDKVELEAQNM-YGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANNGMT 76 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~---~v~~Ll~~~~~~~~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t 76 (438)
..|+||||+|+..|+.+ ++++|++ .|++++.++. .|+||||+|+..|+.+++++|+. .|++++.+|..|.|
T Consensus 53 ~~g~t~Lh~a~~~~~~~~~e~v~~Ll~----~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~t 128 (154)
T PHA02736 53 RHGKQCVHIVSNPDKADPQEKLKLLME----WGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKT 128 (154)
T ss_pred CCCCEEEEeecccCchhHHHHHHHHHH----cCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCC
Confidence 36999999999999874 6889998 6899999984 89999999999999999999997 59999999999999
Q ss_pred HHHHHhhcccccCcHHHHHHHHhCCCCCc
Q 013706 77 PLHLSVWYSIRSEDYATVKTLLEYNADCS 105 (438)
Q Consensus 77 ~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~ 105 (438)
|||+|+ ..++.+++++|+.+|++++
T Consensus 129 pL~~A~----~~~~~~i~~~Ll~~ga~~~ 153 (154)
T PHA02736 129 PYYVAC----ERHDAKMMNILRAKGAQCK 153 (154)
T ss_pred HHHHHH----HcCCHHHHHHHHHcCCCCC
Confidence 999999 7899999999999998875
No 195
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.65 E-value=3.1e-15 Score=157.35 Aligned_cols=226 Identities=18% Similarity=0.279 Sum_probs=149.3
Q ss_pred hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706 162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 241 (438)
Q Consensus 162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 241 (438)
+.++|++.+.+.+...+.... .+...+..+...+||+||||||||++|++||+.+... ..+++.+++++
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~-------~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~----~~~~i~id~se 636 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSR-------AGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS----DDAMVRIDMSE 636 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHH-------hcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC----CCcEEEEEhHH
Confidence 357899998888887655332 1111112223468999999999999999999987532 23677777765
Q ss_pred ccc-----c-------ccccch-HHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCC-------
Q 013706 242 LVG-----E-------FVGHTG-PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK------- 301 (438)
Q Consensus 242 ~~~-----~-------~~g~~~-~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~------- 301 (438)
+.. . |+|... ..+...+....++||||||++++.+ .+.+.|++.++++.
T Consensus 637 ~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~-----------~v~~~Ll~ile~g~l~d~~gr 705 (857)
T PRK10865 637 FMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHP-----------DVFNILLQVLDDGRLTDGQGR 705 (857)
T ss_pred hhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCH-----------HHHHHHHHHHhhCceecCCce
Confidence 432 1 233322 2344555555679999999999886 45588998887532
Q ss_pred ------EEEEEecCCh--hH------------HH----Hh--hhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccc
Q 013706 302 ------VVVIFAGYSE--PM------------KR----VI--ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTED 355 (438)
Q Consensus 302 ------v~vi~~~~~~--~~------------~~----~~--~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~ 355 (438)
.++|++++.. .+ .. .. .-.|+|+.|++.++.|.+++.+++.+|++.++.+...+
T Consensus 706 ~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~r 785 (857)
T PRK10865 706 TVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKR 785 (857)
T ss_pred EEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 2466666541 10 00 00 11488999999999999999999999999999875432
Q ss_pred cccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhh-ccccCCCCCh
Q 013706 356 SLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD-LRLSFDCLDT 415 (438)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~-~r~~~~~~~~ 415 (438)
....+ +...++++++..++.+.+ + ...++|.++.++++-+.... ..+-.+....
T Consensus 786 l~~~g--i~l~is~~al~~L~~~gy--~--~~~GARpL~r~I~~~i~~~la~~iL~g~~~~ 840 (857)
T PRK10865 786 LEERG--YEIHISDEALKLLSENGY--D--PVYGARPLKRAIQQQIENPLAQQILSGELVP 840 (857)
T ss_pred HHhCC--CcCcCCHHHHHHHHHcCC--C--ccCChHHHHHHHHHHHHHHHHHHHHcCcCCC
Confidence 22223 345689999999988654 1 13457899999988877643 3343343333
No 196
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.64 E-value=9.1e-17 Score=137.44 Aligned_cols=152 Identities=26% Similarity=0.336 Sum_probs=75.0
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCC-----------
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI----------- 228 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~----------- 228 (438)
+|.+|+|++.+|..+.-... ...|+||+||||||||++|+.++..|.....
T Consensus 1 Df~dI~GQe~aKrAL~iAAa------------------G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s 62 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA------------------GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYS 62 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH------------------CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-T
T ss_pred ChhhhcCcHHHHHHHHHHHc------------------CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccc
Confidence 47899999999998885421 3469999999999999999999987621110
Q ss_pred ----------cCCCCEEEeecccccccccccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhcc
Q 013706 229 ----------LPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD 298 (438)
Q Consensus 229 ----------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~ 298 (438)
....+|.....+.-....+|-........+..|.+||||+||+-.+. ..+++.|++.|+
T Consensus 63 ~~~~~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~-----------~~vld~Lr~ple 131 (206)
T PF01078_consen 63 VAGLGPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFD-----------RSVLDALRQPLE 131 (206)
T ss_dssp T---S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS------------HHHHHHHHHHHH
T ss_pred cccCCCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcC-----------HHHHHHHHHHHH
Confidence 11122333222222222333322222335678899999999995554 489999999998
Q ss_pred CC---------------CEEEEEecCChhHHHHhh-------h-----------CcCccCCCCcceeCCCCCHHH
Q 013706 299 GG---------------KVVVIFAGYSEPMKRVIA-------S-----------NEGFCRRVTKFFHFNDFNSEE 340 (438)
Q Consensus 299 ~~---------------~v~vi~~~~~~~~~~~~~-------~-----------~p~l~~R~~~~i~~~~~~~~e 340 (438)
++ ++.+|+|.|+.+=-.... . .-++++|||..+.++..+.+|
T Consensus 132 ~g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~~~ 206 (206)
T PF01078_consen 132 DGEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRVSYEE 206 (206)
T ss_dssp HSBEEEEETTEEEEEB--EEEEEEE-S------------------------------------------------
T ss_pred CCeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 75 347788876544322210 0 135677777777777766543
No 197
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.64 E-value=9.6e-16 Score=130.18 Aligned_cols=189 Identities=22% Similarity=0.241 Sum_probs=127.9
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..+.+|+|.++..+.+.-+.+ ....+|++|.||||||||+-+.++|++| .|......+++++
T Consensus 24 ~~l~dIVGNe~tv~rl~via~----------------~gnmP~liisGpPG~GKTTsi~~LAr~L--LG~~~ke~vLELN 85 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAK----------------EGNMPNLIISGPPGTGKTTSILCLAREL--LGDSYKEAVLELN 85 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHH----------------cCCCCceEeeCCCCCchhhHHHHHHHHH--hChhhhhHhhhcc
Confidence 468999999999998887643 2467899999999999999999999988 3433455778899
Q ss_pred cccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCCh
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE 311 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~ 311 (438)
+++-.+-.+- .+.-+.|.+. +..|+++||+|++....| +++..-.+...+...+.++++..+
T Consensus 86 ASdeRGIDvV---Rn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQ--------QAlRRtMEiyS~ttRFalaCN~s~ 154 (333)
T KOG0991|consen 86 ASDERGIDVV---RNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQ--------QALRRTMEIYSNTTRFALACNQSE 154 (333)
T ss_pred CccccccHHH---HHHHHHHHHhhccCCCCceeEEEeeccchhhhHHH--------HHHHHHHHHHcccchhhhhhcchh
Confidence 8875543321 1222344443 337999999999986554 444444555555555555565555
Q ss_pred hHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhcccccc
Q 013706 312 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG 391 (438)
Q Consensus 312 ~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 391 (438)
.+ -.++.+|+ ..++|..++..++..-+....+.+. ...+++.++.++.-. .|+-|
T Consensus 155 KI------iEPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ek-----------v~yt~dgLeaiifta-------~GDMR 209 (333)
T KOG0991|consen 155 KI------IEPIQSRC-AILRYSKLSDQQILKRLLEVAKAEK-----------VNYTDDGLEAIIFTA-------QGDMR 209 (333)
T ss_pred hh------hhhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhC-----------CCCCcchHHHhhhhc-------cchHH
Confidence 54 34567787 7888999999887777666665542 345667777776533 34445
Q ss_pred chHHHHHHHH
Q 013706 392 LVDPMLVNAR 401 (438)
Q Consensus 392 ~l~~~~~~a~ 401 (438)
...|-++...
T Consensus 210 QalNnLQst~ 219 (333)
T KOG0991|consen 210 QALNNLQSTV 219 (333)
T ss_pred HHHHHHHHHh
Confidence 5555555443
No 198
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.64 E-value=8.8e-16 Score=162.71 Aligned_cols=106 Identities=24% Similarity=0.358 Sum_probs=95.5
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHc------------------------------
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKN------------------------------ 51 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~------------------------------ 51 (438)
..|+||||+||..|+.+++++|++ .|+++|.+|.+|+||||+|+..
T Consensus 556 ~~G~TpLh~Aa~~g~~~~v~~Ll~----~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~ 631 (823)
T PLN03192 556 SKGRTPLHIAASKGYEDCVLVLLK----HACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAK 631 (823)
T ss_pred CCCCCHHHHHHHcChHHHHHHHHh----cCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHH
Confidence 369999999999999999999999 6899999999999998866554
Q ss_pred -CCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCC-Cccc
Q 013706 52 -GCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEG-KTPL 115 (438)
Q Consensus 52 -g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g-~t~l 115 (438)
|+.++++.|+++|+++|.+|.+|+||||+|+ ..|+.+++++|+++|++++..|..| .+|+
T Consensus 632 ~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~----~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~ 693 (823)
T PLN03192 632 RNDLTAMKELLKQGLNVDSEDHQGATALQVAM----AEDHVDMVRLLIMNGADVDKANTDDDFSPT 693 (823)
T ss_pred hCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----HCCcHHHHHHHHHcCCCCCCCCCCCCCCHH
Confidence 4556667788899999999999999999999 8999999999999999999999888 7776
No 199
>PHA02917 ankyrin-like protein; Provisional
Probab=99.64 E-value=1.2e-15 Score=156.01 Aligned_cols=128 Identities=19% Similarity=0.169 Sum_probs=108.4
Q ss_pred CCCCcHHHHHHHc---CCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCH----HHHHHHHHCCCCcccccCCC
Q 013706 2 QMAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCN----EAAKLLLAHGAFIEAKANNG 74 (438)
Q Consensus 2 ~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g 74 (438)
+.|+||||+||.. |+.++|++|++ .|++++.++..|+||||+|+..|+. ++++.|++.+...|..+.
T Consensus 30 ~~g~t~Lh~a~~~~~~~~~~~v~~Ll~----~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~-- 103 (661)
T PHA02917 30 QFKNNALHAYLFNEHCNNVEVVKLLLD----SGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDF-- 103 (661)
T ss_pred CCCCcHHHHHHHhhhcCcHHHHHHHHH----CCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCc--
Confidence 5799999998655 88999999999 7999999999999999999999984 456888887544555432
Q ss_pred CcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCcccccc-ccCCCchhHHHHHHhccchHH
Q 013706 75 MTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHL-SNGPGSAKLRELLLWHSEEQR 139 (438)
Q Consensus 75 ~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~-a~~~~~~~~~~lL~~~~~~~~ 139 (438)
.+++|+|+ .+++.+++++|+++|++++.+|.+|+|||+.+ +...++.+++++|+..|++..
T Consensus 104 ~~~~~~a~----~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn 165 (661)
T PHA02917 104 NIFSYMKS----KNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVL 165 (661)
T ss_pred chHHHHHh----hcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcc
Confidence 36677777 88999999999999999999999999999644 456789999999999998764
No 200
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.7e-15 Score=151.04 Aligned_cols=192 Identities=19% Similarity=0.265 Sum_probs=147.7
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcC---CcCCCCEE
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVT 235 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~---~~~~~~~~ 235 (438)
.+++=++|.+.-+.++-+++. .+...|-+|.|+||+|||.++..+|...-... .+....++
T Consensus 167 gklDPvIGRd~EI~r~iqIL~----------------RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~ 230 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILS----------------RRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIY 230 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHh----------------ccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEE
Confidence 357778999977666666522 34567889999999999999999999874322 23445667
Q ss_pred Eeeccccc--ccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCC
Q 013706 236 EVQRTDLV--GEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 310 (438)
Q Consensus 236 ~~~~~~~~--~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~ 310 (438)
.++-..++ .+|-|+-+..++.++++.+ +.||||||+|.+.......+ + .-++-|-|.+.+..|.+.+|+|||-
T Consensus 231 sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G-~-a~DAaNiLKPaLARGeL~~IGATT~ 308 (786)
T COG0542 231 SLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEG-G-AMDAANLLKPALARGELRCIGATTL 308 (786)
T ss_pred EecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccc-c-ccchhhhhHHHHhcCCeEEEEeccH
Confidence 77766655 4599999999999887764 68999999999987554322 2 3466799999999999999999999
Q ss_pred hhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHH
Q 013706 311 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALI 376 (438)
Q Consensus 311 ~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (438)
+.+...+..|+||.||| ..|.+..|+.++-..|++-.-.+... --...++++++.+-.
T Consensus 309 ~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~-------hH~V~i~D~Al~aAv 366 (786)
T COG0542 309 DEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEA-------HHGVRITDEALVAAV 366 (786)
T ss_pred HHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHH-------ccCceecHHHHHHHH
Confidence 99999999999999999 89999999999999999876554322 122345566655543
No 201
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.63 E-value=1.1e-15 Score=152.74 Aligned_cols=203 Identities=17% Similarity=0.221 Sum_probs=144.5
Q ss_pred hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706 162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 241 (438)
Q Consensus 162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 241 (438)
..++|......++.+.+..+ .....++++.|++||||+++|++++.. +.....+|+.++|..
T Consensus 134 ~~lig~s~~~~~v~~~i~~~--------------a~~~~~vli~Ge~GtGK~~~A~~ih~~----~~~~~~~~~~~~c~~ 195 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRL--------------SRSDITVLINGESGTGKELVARALHRH----SPRANGPFIALNMAA 195 (463)
T ss_pred cceeecCHHHHHHHHHHHHH--------------hCcCCeEEEECCCCCCHHHHHHHHHHh----CCCCCCCeEEEeCCC
Confidence 35777777666666554332 234568999999999999999999984 333456999999876
Q ss_pred ccc-----cccccchH-------HHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC---------
Q 013706 242 LVG-----EFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--------- 300 (438)
Q Consensus 242 ~~~-----~~~g~~~~-------~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~--------- 300 (438)
+.. ..+|+... .....++.+.+|+||||||+.+.+..| ..|++.++++
T Consensus 196 ~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q-----------~~ll~~l~~~~~~~~~~~~ 264 (463)
T TIGR01818 196 IPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQ-----------TRLLRVLADGEFYRVGGRT 264 (463)
T ss_pred CCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHH-----------HHHHHHHhcCcEEECCCCc
Confidence 532 24453211 112346677889999999999987544 7888877653
Q ss_pred ----CEEEEEecCChhHHHHhh--hCcCccCCC-CcceeCCCCC--HHHHHHHHHHHHhccccccccccccc-cccccHH
Q 013706 301 ----KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKL-HSSCSMD 370 (438)
Q Consensus 301 ----~v~vi~~~~~~~~~~~~~--~~p~l~~R~-~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~-~~~~~~~ 370 (438)
++.+|++++.+....+.. -.+.|..|+ ...|.+|++. .+++..++..++.+... .+.. ...++++
T Consensus 265 ~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~-----~~~~~~~~~~~~ 339 (463)
T TIGR01818 265 PIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAAR-----ELDVEPKLLDPE 339 (463)
T ss_pred eeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHH-----HhCCCCCCcCHH
Confidence 356777776655432210 023455577 4588999998 68999999999987643 2211 1358999
Q ss_pred HHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 371 AIAALIEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
++..+..+.| |||.|+|+++++++...+
T Consensus 340 a~~~L~~~~w------pgNvreL~~~~~~~~~~~ 367 (463)
T TIGR01818 340 ALERLKQLRW------PGNVRQLENLCRWLTVMA 367 (463)
T ss_pred HHHHHHhCCC------CChHHHHHHHHHHHHHhC
Confidence 9999999999 999999999999998765
No 202
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.63 E-value=9.5e-15 Score=142.69 Aligned_cols=178 Identities=15% Similarity=0.176 Sum_probs=117.9
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchH-HHHHHHHHc-cCcEEEEeCcccccC
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGP-KTRRRIKEA-EGGILFVDEAYRLIP 276 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~a-~~~il~iDEid~l~~ 276 (438)
..+++||||||||||.+++++++++.... ....++.+++.++...+...... .+....+.. ...+|+|||+|.+..
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~--~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENN--PNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAG 213 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhC--CCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcC
Confidence 45689999999999999999999886431 12356777777765544332111 111111111 246999999999875
Q ss_pred CCCCCCchhHHHHHHHHHhhccCCCEEEEEecCC-hhHHHHhhhCcCccCCCC--cceeCCCCCHHHHHHHHHHHHhccc
Q 013706 277 MQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS-EPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQT 353 (438)
Q Consensus 277 ~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~-~~~~~~~~~~p~l~~R~~--~~i~~~~~~~~e~~~il~~~l~~~~ 353 (438)
+.. .....+..+-...+.+..++|.++.. ..+..+ ++.+++||. ..+.|++|+.+++.+|++..+....
T Consensus 214 ~~~-----~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l---~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~ 285 (405)
T TIGR00362 214 KER-----TQEEFFHTFNALHENGKQIVLTSDRPPKELPGL---EERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEG 285 (405)
T ss_pred CHH-----HHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhh---hhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 321 11223333334445555555555432 222233 789999994 5899999999999999999987642
Q ss_pred cccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 354 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
..++++++..++... .+|.|.+..++.+....+
T Consensus 286 -----------~~l~~e~l~~ia~~~-------~~~~r~l~~~l~~l~~~a 318 (405)
T TIGR00362 286 -----------LELPDEVLEFIAKNI-------RSNVRELEGALNRLLAYA 318 (405)
T ss_pred -----------CCCCHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHH
Confidence 446778888888765 678899988888776544
No 203
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.6e-14 Score=146.01 Aligned_cols=186 Identities=20% Similarity=0.281 Sum_probs=129.6
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcC--CC----
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP--TD---- 232 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~--~~---- 232 (438)
..|++++|++.+++.|..++..- ....++||+||||||||++|+++|+.+....... ..
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~---------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~ 77 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISN---------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGK 77 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcC---------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcc
Confidence 56899999999999988874421 1345799999999999999999999986422110 01
Q ss_pred -------------CEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHH
Q 013706 233 -------------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEE 292 (438)
Q Consensus 233 -------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ 292 (438)
.+++++.. .+.....++++++.+ ...|+||||+|.|.. ...+.
T Consensus 78 C~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~-----------~a~na 140 (620)
T PRK14948 78 CELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST-----------AAFNA 140 (620)
T ss_pred cHHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH-----------HHHHH
Confidence 12222211 112334667766554 237999999999975 45599
Q ss_pred HHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHH
Q 013706 293 IMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMD 370 (438)
Q Consensus 293 ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~ 370 (438)
||..|++ ..+++|++++.. ..+ .|++++|+ ..++|+.++.+++...+.....++. ..++.+
T Consensus 141 LLK~LEePp~~tvfIL~t~~~--~~l---lpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~keg-----------i~is~~ 203 (620)
T PRK14948 141 LLKTLEEPPPRVVFVLATTDP--QRV---LPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKES-----------IEIEPE 203 (620)
T ss_pred HHHHHhcCCcCeEEEEEeCCh--hhh---hHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhC-----------CCCCHH
Confidence 9999997 566677665432 233 57789998 8899999999999988888777642 235667
Q ss_pred HHHHHHHHHhhHhhhccccccchHHHHHHH
Q 013706 371 AIAALIEKETTEKQRREMNGGLVDPMLVNA 400 (438)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a 400 (438)
++..++... .|+.|.+.+.+++.
T Consensus 204 al~~La~~s-------~G~lr~A~~lLekl 226 (620)
T PRK14948 204 ALTLVAQRS-------QGGLRDAESLLDQL 226 (620)
T ss_pred HHHHHHHHc-------CCCHHHHHHHHHHH
Confidence 777666654 56667777777754
No 204
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.62 E-value=1.2e-15 Score=152.27 Aligned_cols=204 Identities=15% Similarity=0.132 Sum_probs=141.0
Q ss_pred HhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecc
Q 013706 161 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 240 (438)
Q Consensus 161 l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 240 (438)
+..++|.+.....+.+.+..+ +....+++++|++||||+++|++++... .....+|+.++|.
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~--------------a~~~~~vli~Ge~GtGK~~lA~~ih~~s----~~~~~~~~~i~c~ 203 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKI--------------ALSQASVLISGESGTGKELIARAIHYNS----RRAKGPFIKVNCA 203 (457)
T ss_pred ccceecccHHHhHHHHHHHHH--------------cCCCcEEEEEcCCCccHHHHHHHHHHhC----CCCCCCeEEEECC
Confidence 345677666555555443322 2355789999999999999999998843 3455689999998
Q ss_pred cccc-----cccccchHH-------HHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC--------
Q 013706 241 DLVG-----EFVGHTGPK-------TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------- 300 (438)
Q Consensus 241 ~~~~-----~~~g~~~~~-------~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------- 300 (438)
.+.. .++|+.... ....+..|.+|+|||||++.+.+..| ..|+..++++
T Consensus 204 ~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q-----------~~L~~~l~~~~~~~~~~~ 272 (457)
T PRK11361 204 ALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQ-----------AKLLRILQEREFERIGGH 272 (457)
T ss_pred CCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHH-----------HHHHHHHhcCcEEeCCCC
Confidence 7533 345532111 12356778899999999999987544 7888887653
Q ss_pred -----CEEEEEecCChhHHHHh--hhCcCccCCC-CcceeCCCCC--HHHHHHHHHHHHhccccccccccccc-cccccH
Q 013706 301 -----KVVVIFAGYSEPMKRVI--ASNEGFCRRV-TKFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKL-HSSCSM 369 (438)
Q Consensus 301 -----~v~vi~~~~~~~~~~~~--~~~p~l~~R~-~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~-~~~~~~ 369 (438)
++.+|++++.+....+- ...+.|..|+ ...|.+|++. .+++..++..++.+... .+.. ...+++
T Consensus 273 ~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~-----~~~~~~~~~~~ 347 (457)
T PRK11361 273 QTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSS-----ENQRDIIDIDP 347 (457)
T ss_pred ceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHH-----HcCCCCCCcCH
Confidence 25777777655432211 0123445566 5667777776 47788888888887643 1111 246899
Q ss_pred HHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 370 DAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
+++..+..+.| |||.++|+++++++...+
T Consensus 348 ~a~~~L~~~~w------pgNv~eL~~~~~~~~~~~ 376 (457)
T PRK11361 348 MAMSLLTAWSW------PGNIRELSNVIERAVVMN 376 (457)
T ss_pred HHHHHHHcCCC------CCcHHHHHHHHHHHHHhC
Confidence 99999999999 999999999999998754
No 205
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=1.3e-14 Score=145.99 Aligned_cols=189 Identities=15% Similarity=0.251 Sum_probs=129.2
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcC--------
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-------- 230 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~-------- 230 (438)
..|++++|++.+++.|+..+.. ..-+..+||+||||||||++|+++|+.+.......
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~---------------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~ 77 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRM---------------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV 77 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHc---------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc
Confidence 4689999999999998876431 12334599999999999999999999996522110
Q ss_pred CC-----------------CEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhH
Q 013706 231 TD-----------------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYG 286 (438)
Q Consensus 231 ~~-----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~ 286 (438)
.. .++.+++.+. .....++.+.+.. ...|++|||+|.+..
T Consensus 78 ~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~------~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~---------- 141 (620)
T PRK14954 78 TEPCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST---------- 141 (620)
T ss_pred CCCCccCHHHHHHhccCCCCeEEeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH----------
Confidence 01 1122221110 0123444444333 347999999999975
Q ss_pred HHHHHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhcccccccccccccc
Q 013706 287 IEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLH 364 (438)
Q Consensus 287 ~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~ 364 (438)
...+.|+..|++ ...++|++++. ...+ .+++++|+ ..++|.+++.+++...+...+.++.
T Consensus 142 -~a~naLLK~LEePp~~tv~IL~t~~--~~kL---l~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~eg----------- 203 (620)
T PRK14954 142 -AAFNAFLKTLEEPPPHAIFIFATTE--LHKI---PATIASRC-QRFNFKRIPLDEIQSQLQMICRAEG----------- 203 (620)
T ss_pred -HHHHHHHHHHhCCCCCeEEEEEeCC--hhhh---hHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcC-----------
Confidence 345899999998 45666665533 2333 56788887 8999999999999999988887642
Q ss_pred ccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706 365 SSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 403 (438)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~ 403 (438)
..++.+++..++... .|+.+.+.+.+++....
T Consensus 204 i~I~~eal~~La~~s-------~Gdlr~al~eLeKL~~y 235 (620)
T PRK14954 204 IQIDADALQLIARKA-------QGSMRDAQSILDQVIAF 235 (620)
T ss_pred CCCCHHHHHHHHHHh-------CCCHHHHHHHHHHHHHh
Confidence 335777888877765 57777787877766544
No 206
>PHA02917 ankyrin-like protein; Provisional
Probab=99.62 E-value=1.9e-15 Score=154.55 Aligned_cols=127 Identities=17% Similarity=0.152 Sum_probs=96.8
Q ss_pred cHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHH--HcCCHHHHHHHHHCCCCcccccC---CC------
Q 013706 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAA--KNGCNEAAKLLLAHGAFIEAKAN---NG------ 74 (438)
Q Consensus 6 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~--~~g~~~~v~~Ll~~g~~~~~~~~---~g------ 74 (438)
+++|+|+..|+.++|++|++ .|+++|.+|..|+||||+++ ..|+.+++++|+++|+++|..|. .|
T Consensus 105 ~~~~~a~~~~~~e~vk~Ll~----~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~ 180 (661)
T PHA02917 105 IFSYMKSKNVDVDLIKVLVE----HGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDY 180 (661)
T ss_pred hHHHHHhhcCCHHHHHHHHH----cCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccc
Confidence 34444555556677777777 78999999999999999654 47899999999999999987653 33
Q ss_pred -----CcHHHHHhhccc-------ccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCc-hhHHHHHHhccch
Q 013706 75 -----MTPLHLSVWYSI-------RSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS-AKLRELLLWHSEE 137 (438)
Q Consensus 75 -----~t~L~~A~~~~~-------~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~-~~~~~lL~~~~~~ 137 (438)
.||||+|+.... ..++.+++++|+.+|++++.+|.+|+||||+++..+.. .+++++|.. |++
T Consensus 181 ~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d 255 (661)
T PHA02917 181 QPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GID 255 (661)
T ss_pred cccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCc
Confidence 599999973100 13578999999999999999999999999555544332 378998875 443
No 207
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.62 E-value=2e-15 Score=141.02 Aligned_cols=160 Identities=19% Similarity=0.243 Sum_probs=103.3
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcC---------
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP--------- 230 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~--------- 230 (438)
.|.+++|++.+++.+.-.. + .....|+||+||||||||++||+++..+.......
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~--~--------------~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTA--I--------------DPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CHHHhCCHHHHHHHHHHHH--h--------------ccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 5889999999988776421 1 01236899999999999999999999883100000
Q ss_pred -----------------CCCEEEeeccccccccccc---------chH-HHHHHHHHccCcEEEEeCcccccCCCCCCCc
Q 013706 231 -----------------TDRVTEVQRTDLVGEFVGH---------TGP-KTRRRIKEAEGGILFVDEAYRLIPMQKADDK 283 (438)
Q Consensus 231 -----------------~~~~~~~~~~~~~~~~~g~---------~~~-~~~~~~~~a~~~il~iDEid~l~~~~~~~~~ 283 (438)
..+|+.+....-....+|. .+. -....+.++.+|+|||||++.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~------- 142 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLED------- 142 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCH-------
Confidence 0122222222112223442 100 112344567789999999999987
Q ss_pred hhHHHHHHHHHhhccCCC---------------EEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCH-HHHHHHHHH
Q 013706 284 DYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNS-EELAKILHI 347 (438)
Q Consensus 284 ~~~~~~~~~ll~~~~~~~---------------v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~-~e~~~il~~ 347 (438)
.+++.|++.|+++. ++++++.++ .+.. ..+++++||...+.+++|.. +++.+|+++
T Consensus 143 ----~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP--~e~~--l~~aLldRF~~~v~v~~~~~~~e~~~il~~ 214 (334)
T PRK13407 143 ----HIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNP--EEGE--LRPQLLDRFGLSVEVRSPRDVETRVEVIRR 214 (334)
T ss_pred ----HHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCc--ccCC--CCHHHHhhcceEEEcCCCCcHHHHHHHHHH
Confidence 44488888887643 345555333 2211 26789999999999998887 888999987
Q ss_pred HHh
Q 013706 348 KMN 350 (438)
Q Consensus 348 ~l~ 350 (438)
...
T Consensus 215 ~~~ 217 (334)
T PRK13407 215 RDA 217 (334)
T ss_pred hhc
Confidence 543
No 208
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.62 E-value=6e-15 Score=119.22 Aligned_cols=121 Identities=45% Similarity=0.696 Sum_probs=108.9
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
..|.||||+|+..|+.+++++|++ .+.+.+..+..|.||||+|+..++.+++++|++.|++++..+..|.||+|+|
T Consensus 5 ~~g~t~l~~a~~~~~~~~i~~li~----~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a 80 (126)
T cd00204 5 EDGRTPLHLAASNGHLEVVKLLLE----NGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLA 80 (126)
T ss_pred cCCCCHHHHHHHcCcHHHHHHHHH----cCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHH
Confidence 369999999999999999999999 5677788899999999999999999999999999999999999999999999
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHH
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELL 131 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL 131 (438)
+ ..++.+++++|+..+.+.+..+..+.||+ +.+...+...+.++|
T Consensus 81 ~----~~~~~~~~~~L~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~L 125 (126)
T cd00204 81 A----RNGNLDVVKLLLKHGADVNARDKDGRTPL-HLAAKNGHLEVVKLL 125 (126)
T ss_pred H----HcCcHHHHHHHHHcCCCCcccCCCCCCHH-HHHHhcCCHHHHHHh
Confidence 9 78889999999999999999999999999 444445666776665
No 209
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.61 E-value=1.3e-14 Score=141.45 Aligned_cols=174 Identities=18% Similarity=0.181 Sum_probs=116.2
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHH--ccCcEEEEeCcccccC
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE--AEGGILFVDEAYRLIP 276 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--a~~~il~iDEid~l~~ 276 (438)
..+++||||||+|||.|++++++.+...+ ..++.++..++...+...........|.. ....+|+|||++.+..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~----~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~ 216 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESG----GKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSG 216 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcC----CCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcC
Confidence 35799999999999999999999886533 36667776655443322111111122332 2347999999999865
Q ss_pred CCCCCCchhHHHHHHHHHhhccCCCEEEEEecC-ChhHHHHhhhCcCccCCC--CcceeCCCCCHHHHHHHHHHHHhccc
Q 013706 277 MQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY-SEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQT 353 (438)
Q Consensus 277 ~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~-~~~~~~~~~~~p~l~~R~--~~~i~~~~~~~~e~~~il~~~l~~~~ 353 (438)
+.. ...+....+-..++.+..+++.++. +..+..+ ++.|++|| ...+.+++|+.+++..|+++.+....
T Consensus 217 k~~-----~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l---~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~ 288 (445)
T PRK12422 217 KGA-----TQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM---EERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALS 288 (445)
T ss_pred Chh-----hHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh---HHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcC
Confidence 321 1112222222233445555555544 3333333 78999999 48999999999999999999887642
Q ss_pred cccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHH
Q 013706 354 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 402 (438)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~ 402 (438)
..++++++..++... .+|+|.+.+.+++...
T Consensus 289 -----------~~l~~evl~~la~~~-------~~dir~L~g~l~~l~~ 319 (445)
T PRK12422 289 -----------IRIEETALDFLIEAL-------SSNVKSLLHALTLLAK 319 (445)
T ss_pred -----------CCCCHHHHHHHHHhc-------CCCHHHHHHHHHHHHH
Confidence 456788888888866 6788999999888753
No 210
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.61 E-value=9.5e-15 Score=144.38 Aligned_cols=178 Identities=15% Similarity=0.170 Sum_probs=120.1
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHH-HHHHHHHc-cCcEEEEeCcccccC
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPK-TRRRIKEA-EGGILFVDEAYRLIP 276 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~a-~~~il~iDEid~l~~ 276 (438)
..+++||||||||||.+++++++++...+ ....++.+++.++...+....... .....+.. ...+|+|||+|.+..
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~--~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~ 225 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKN--PNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAG 225 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC--CCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcC
Confidence 35699999999999999999999986532 123567777777765544332111 11222221 346999999999865
Q ss_pred CCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChh-HHHHhhhCcCccCCCC--cceeCCCCCHHHHHHHHHHHHhccc
Q 013706 277 MQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEP-MKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQT 353 (438)
Q Consensus 277 ~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~-~~~~~~~~p~l~~R~~--~~i~~~~~~~~e~~~il~~~l~~~~ 353 (438)
+.. ....++..+-..++.+..++|+++.+.. +..+ +|.+++||. ..+.|.+|+.+++..|++..+....
T Consensus 226 ~~~-----~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l---~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~ 297 (450)
T PRK00149 226 KER-----TQEEFFHTFNALHEAGKQIVLTSDRPPKELPGL---EERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEG 297 (450)
T ss_pred CHH-----HHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHH---HHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcC
Confidence 321 1123334444444556556665544322 2233 788999994 6899999999999999999887532
Q ss_pred cccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 354 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
..++++++..++... .++.|.+..++++....+
T Consensus 298 -----------~~l~~e~l~~ia~~~-------~~~~R~l~~~l~~l~~~~ 330 (450)
T PRK00149 298 -----------IDLPDEVLEFIAKNI-------TSNVRELEGALNRLIAYA 330 (450)
T ss_pred -----------CCCCHHHHHHHHcCc-------CCCHHHHHHHHHHHHHHH
Confidence 346778888888876 678899988888776554
No 211
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=1.3e-14 Score=147.29 Aligned_cols=188 Identities=19% Similarity=0.247 Sum_probs=126.5
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC-------
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT------- 231 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~------- 231 (438)
..|++++|++.+++.|...+.. ...+..+||+||||+|||++|+++|+.+........
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~---------------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c 77 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAE---------------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTC 77 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHh---------------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccC
Confidence 4789999999999998876431 112344799999999999999999998863221000
Q ss_pred -----------CCEEEeecccccccccccchHHHHHHHHH-------ccCcEEEEeCcccccCCCCCCCchhHHHHHHHH
Q 013706 232 -----------DRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEI 293 (438)
Q Consensus 232 -----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~l 293 (438)
..+++++++.. ..-..++.+.+. +...|+||||+|.|.. ..++.|
T Consensus 78 ~~c~~i~~~~~~d~~~i~~~~~------~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-----------~a~naL 140 (585)
T PRK14950 78 EMCRAIAEGSAVDVIEMDAASH------TSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-----------AAFNAL 140 (585)
T ss_pred HHHHHHhcCCCCeEEEEecccc------CCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-----------HHHHHH
Confidence 11223332110 112234444332 2347999999998874 445889
Q ss_pred HhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHH
Q 013706 294 MSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA 371 (438)
Q Consensus 294 l~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 371 (438)
+..+++ ...++|++++. ...+ .+.+++|+ ..+.|+.++.+++..++...+.+.. ..++.++
T Consensus 141 Lk~LEepp~~tv~Il~t~~--~~kl---l~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~eg-----------l~i~~ea 203 (585)
T PRK14950 141 LKTLEEPPPHAIFILATTE--VHKV---PATILSRC-QRFDFHRHSVADMAAHLRKIAAAEG-----------INLEPGA 203 (585)
T ss_pred HHHHhcCCCCeEEEEEeCC--hhhh---hHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHH
Confidence 999987 44555555432 2333 46678887 7899999999999999998887642 2356777
Q ss_pred HHHHHHHHhhHhhhccccccchHHHHHHHHH
Q 013706 372 IAALIEKETTEKQRREMNGGLVDPMLVNARE 402 (438)
Q Consensus 372 ~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~ 402 (438)
+..++... .|+.+.+.+.+++...
T Consensus 204 l~~La~~s-------~Gdlr~al~~LekL~~ 227 (585)
T PRK14950 204 LEAIARAA-------TGSMRDAENLLQQLAT 227 (585)
T ss_pred HHHHHHHc-------CCCHHHHHHHHHHHHH
Confidence 87777654 5778888888886543
No 212
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.61 E-value=1.5e-15 Score=128.45 Aligned_cols=124 Identities=26% Similarity=0.381 Sum_probs=88.4
Q ss_pred hcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccc
Q 013706 164 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV 243 (438)
Q Consensus 164 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 243 (438)
|+|.+...+++.+.++.+ +..+.+|||+|++||||+++|++|++ .+.....||+.++|+.+.
T Consensus 1 liG~s~~m~~~~~~~~~~--------------a~~~~pVlI~GE~GtGK~~lA~~IH~----~s~r~~~pfi~vnc~~~~ 62 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA--------------ASSDLPVLITGETGTGKELLARAIHN----NSPRKNGPFISVNCAALP 62 (168)
T ss_dssp SS--SHHHHHHHHHHHHH--------------TTSTS-EEEECSTTSSHHHHHHHHHH----CSTTTTS-EEEEETTTS-
T ss_pred CEeCCHHHHHHHHHHHHH--------------hCCCCCEEEEcCCCCcHHHHHHHHHH----hhhcccCCeEEEehhhhh
Confidence 467777666666665544 35678999999999999999999999 555667899999998754
Q ss_pred -----ccccccch-------HHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-----------
Q 013706 244 -----GEFVGHTG-------PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG----------- 300 (438)
Q Consensus 244 -----~~~~g~~~-------~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~----------- 300 (438)
..++|... ......|++|.+|+||||||+.|.+..| ..|++.++++
T Consensus 63 ~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q-----------~~Ll~~l~~~~~~~~g~~~~~ 131 (168)
T PF00158_consen 63 EELLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPELQ-----------AKLLRVLEEGKFTRLGSDKPV 131 (168)
T ss_dssp HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HHHH-----------HHHHHHHHHSEEECCTSSSEE
T ss_pred cchhhhhhhccccccccccccccCCceeeccceEEeecchhhhHHHHH-----------HHHHHHHhhchhccccccccc
Confidence 33566532 1234799999999999999999998444 8888888742
Q ss_pred --CEEEEEecCChhHHHH
Q 013706 301 --KVVVIFAGYSEPMKRV 316 (438)
Q Consensus 301 --~v~vi~~~~~~~~~~~ 316 (438)
++.+|++|+.+..+.+
T Consensus 132 ~~~~RiI~st~~~l~~~v 149 (168)
T PF00158_consen 132 PVDVRIIASTSKDLEELV 149 (168)
T ss_dssp E--EEEEEEESS-HHHHH
T ss_pred cccceEEeecCcCHHHHH
Confidence 5788888877665544
No 213
>PRK15115 response regulator GlrR; Provisional
Probab=99.61 E-value=1.6e-15 Score=150.64 Aligned_cols=181 Identities=18% Similarity=0.214 Sum_probs=128.7
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc-----ccccch-------HHHHHHHHHccCcE
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-----FVGHTG-------PKTRRRIKEAEGGI 265 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~-------~~~~~~~~~a~~~i 265 (438)
...+++++|++|||||++|+++++... ....+|+.++|..+... .+|+.. ......++.+.+|+
T Consensus 156 ~~~~vli~Ge~GtGk~~lA~~ih~~s~----r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 231 (444)
T PRK15115 156 SDVSVLINGQSGTGKEILAQAIHNASP----RASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGT 231 (444)
T ss_pred CCCeEEEEcCCcchHHHHHHHHHHhcC----CCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEECCCCE
Confidence 456899999999999999999998543 34568999998865332 344321 11223567788899
Q ss_pred EEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-------------CEEEEEecCChhHHHHhh--hCcCccCCC-Cc
Q 013706 266 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------------KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TK 329 (438)
Q Consensus 266 l~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------------~v~vi~~~~~~~~~~~~~--~~p~l~~R~-~~ 329 (438)
|||||+|.|.+..| ..|+..++++ ++.+|++++.+....+.. -.+.|..|+ ..
T Consensus 232 l~l~~i~~l~~~~q-----------~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~ 300 (444)
T PRK15115 232 LFLDEIGDMPAPLQ-----------VKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVV 300 (444)
T ss_pred EEEEccccCCHHHH-----------HHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhcee
Confidence 99999999998555 7888888753 457777776554332211 013344455 55
Q ss_pred ceeCCCCCH--HHHHHHHHHHHhcccccccccccc-ccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 330 FFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFK-LHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 330 ~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
.|.+|++.. +++..++..++.+... .+. ....++++++..+..+.| |||.|+|++++++|...+
T Consensus 301 ~i~lPpLr~R~eDi~~l~~~~l~~~~~-----~~~~~~~~~~~~a~~~L~~~~W------pgNvreL~~~i~~~~~~~ 367 (444)
T PRK15115 301 SLKIPALAERTEDIPLLANHLLRQAAE-----RHKPFVRAFSTDAMKRLMTASW------PGNVRQLVNVIEQCVALT 367 (444)
T ss_pred eecCCChHhccccHHHHHHHHHHHHHH-----HhCCCCCCcCHHHHHHHHhCCC------CChHHHHHHHHHHHHHhC
Confidence 677777764 7888888998887542 121 123589999999999999 999999999999988754
No 214
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.61 E-value=1e-14 Score=136.44 Aligned_cols=159 Identities=21% Similarity=0.272 Sum_probs=106.9
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEE----
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT---- 235 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~---- 235 (438)
-|.+++|++.+|..|.-... .+...++||.||+|||||++||++++.+....+....+|.
T Consensus 15 pf~~ivGq~~~k~al~~~~~----------------~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~ 78 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVI----------------DPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPS 78 (350)
T ss_pred CHHHHhChHHHHHHHHHhcc----------------CCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCC
Confidence 48899999999988875421 2245689999999999999999999988654444333332
Q ss_pred -----------------------------Eeecccccccccccc--hHH--------HHHHHHHccCcEEEEeCcccccC
Q 013706 236 -----------------------------EVQRTDLVGEFVGHT--GPK--------TRRRIKEAEGGILFVDEAYRLIP 276 (438)
Q Consensus 236 -----------------------------~~~~~~~~~~~~g~~--~~~--------~~~~~~~a~~~il~iDEid~l~~ 276 (438)
.+.........+|.. ++. -...+.+|.+|||||||++.+.+
T Consensus 79 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~ 158 (350)
T CHL00081 79 DPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD 158 (350)
T ss_pred ChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH
Confidence 111111112233320 011 12345677789999999999998
Q ss_pred CCCCCCchhHHHHHHHHHhhccCC---------------CEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCC-HHH
Q 013706 277 MQKADDKDYGIEALEEIMSVMDGG---------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN-SEE 340 (438)
Q Consensus 277 ~~~~~~~~~~~~~~~~ll~~~~~~---------------~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~-~~e 340 (438)
..| +.|++.|+++ .+++|++.+ +.+.. ..++|.+||...+.+..|+ .++
T Consensus 159 ~~Q-----------~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~n--p~eg~--l~~~LldRf~l~i~l~~~~~~~~ 223 (350)
T CHL00081 159 HLV-----------DILLDSAASGWNTVEREGISIRHPARFVLVGSGN--PEEGE--LRPQLLDRFGMHAEIRTVKDPEL 223 (350)
T ss_pred HHH-----------HHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccC--cccCC--CCHHHHHHhCceeecCCCCChHH
Confidence 544 7888888653 234444433 33311 2788999999999999998 589
Q ss_pred HHHHHHHHH
Q 013706 341 LAKILHIKM 349 (438)
Q Consensus 341 ~~~il~~~l 349 (438)
+.+|+++..
T Consensus 224 e~~il~~~~ 232 (350)
T CHL00081 224 RVKIVEQRT 232 (350)
T ss_pred HHHHHHhhh
Confidence 999998764
No 215
>PHA02741 hypothetical protein; Provisional
Probab=99.60 E-value=4.4e-15 Score=127.01 Aligned_cols=94 Identities=30% Similarity=0.417 Sum_probs=86.4
Q ss_pred CCCcHHHHHHHcCC----HHHHHHHhcCCCCCCcccccccC-CCChHHHHHHHcCCHHHHHHHHH-CCCCcccccCCCCc
Q 013706 3 MAQTPLHVSAGYNK----AEIVKSLLEWPGNDKVELEAQNM-YGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANNGMT 76 (438)
Q Consensus 3 ~g~tpLh~A~~~g~----~~~v~~Ll~~~~~~~~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t 76 (438)
.|+||||+|+..|+ .+++++|++ .|+++|.++. .|+||||+|+..++.+++++|+. .|++++..|..|+|
T Consensus 59 ~g~T~Lh~A~~~g~~~~~~~ii~~Ll~----~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t 134 (169)
T PHA02741 59 AGQMCIHIAAEKHEAQLAAEIIDHLIE----LGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKS 134 (169)
T ss_pred CCCcHHHHHHHcCChHHHHHHHHHHHH----cCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCC
Confidence 68999999999999 588999998 6889999985 89999999999999999999997 59999999999999
Q ss_pred HHHHHhhcccccCcHHHHHHHHhCCCCC
Q 013706 77 PLHLSVWYSIRSEDYATVKTLLEYNADC 104 (438)
Q Consensus 77 ~L~~A~~~~~~~~~~~~~~~Ll~~ga~~ 104 (438)
|||+|+ ..++.+++++|++.++..
T Consensus 135 pL~~A~----~~~~~~iv~~L~~~~~~~ 158 (169)
T PHA02741 135 PFELAI----DNEDVAMMQILREIVATS 158 (169)
T ss_pred HHHHHH----HCCCHHHHHHHHHHHHHh
Confidence 999999 788999999999876554
No 216
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.60 E-value=2.7e-15 Score=143.68 Aligned_cols=158 Identities=20% Similarity=0.222 Sum_probs=105.4
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC------
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR------ 233 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~------ 233 (438)
.|++++|++.+++.|++.+..-.. . ....+...+..+||+||||+|||++|+.+|+.+...... ..+
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~---~---~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~-~~~Cg~C~~ 75 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARA---D---VAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD-EPGCGECRA 75 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccc---c---ccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC-CCCCCCCHH
Confidence 588999999999999987553210 0 011112235569999999999999999999988643210 011
Q ss_pred -----------EEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHh
Q 013706 234 -----------VTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS 295 (438)
Q Consensus 234 -----------~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~ 295 (438)
+..+.+.. ..+ .-..++.+++.+ ...|+||||+|.+.+. ..|.||.
T Consensus 76 C~~~~~~~hpD~~~i~~~~---~~i--~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-----------aanaLLk 139 (394)
T PRK07940 76 CRTVLAGTHPDVRVVAPEG---LSI--GVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-----------AANALLK 139 (394)
T ss_pred HHHHhcCCCCCEEEecccc---ccC--CHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-----------HHHHHHH
Confidence 11111110 111 123456666544 2369999999999763 3488999
Q ss_pred hccC---CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHH
Q 013706 296 VMDG---GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHI 347 (438)
Q Consensus 296 ~~~~---~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~ 347 (438)
.|++ +.+++++|++... + .|++++|+ ..+.|++|+.++..+++..
T Consensus 140 ~LEep~~~~~fIL~a~~~~~---l---lpTIrSRc-~~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 140 AVEEPPPRTVWLLCAPSPED---V---LPTIRSRC-RHVALRTPSVEAVAEVLVR 187 (394)
T ss_pred HhhcCCCCCeEEEEECChHH---C---hHHHHhhC-eEEECCCCCHHHHHHHHHH
Confidence 9987 5556666655333 2 78899998 8999999999998888763
No 217
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.60 E-value=1.1e-15 Score=158.86 Aligned_cols=131 Identities=39% Similarity=0.540 Sum_probs=114.1
Q ss_pred CCCcHHHHHHHcC-CHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCC-----------------
Q 013706 3 MAQTPLHVSAGYN-KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG----------------- 64 (438)
Q Consensus 3 ~g~tpLh~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g----------------- 64 (438)
.|+||+|.|+..| +.+....+++ .+.++|.....|.||||+|++.||.+++..|++.+
T Consensus 439 lG~T~lhvaa~~g~~~~~~~~l~~----~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla 514 (1143)
T KOG4177|consen 439 LGYTPLHVAAKKGRYLQIARLLLQ----YGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLA 514 (1143)
T ss_pred cCCChhhhhhhcccHhhhhhhHhh----cCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhh
Confidence 6899999999999 8888888888 68889999999999999999999887776666654
Q ss_pred ----------------CCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHH
Q 013706 65 ----------------AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLR 128 (438)
Q Consensus 65 ----------------~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~ 128 (438)
++++.++.+|.||||.|| ..|+..+|++|+++|++++.+++.|+||| |.|+..++.+++
T Consensus 515 ~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~----~~g~v~~VkfLLe~gAdv~ak~~~G~TPL-H~Aa~~G~~~i~ 589 (1143)
T KOG4177|consen 515 ADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAV----HYGNVDLVKFLLEHGADVNAKDKLGYTPL-HQAAQQGHNDIA 589 (1143)
T ss_pred hhhhhHHHHHHHhhcCCceehhcccccchHHHHH----hcCCchHHHHhhhCCccccccCCCCCChh-hHHHHcChHHHH
Confidence 456667778999999999 88999999999999999999999999999 555557799999
Q ss_pred HHHHhccchHHHHH
Q 013706 129 ELLLWHSEEQRKRR 142 (438)
Q Consensus 129 ~lL~~~~~~~~~~~ 142 (438)
.+|.++|++.+..+
T Consensus 590 ~LLlk~GA~vna~d 603 (1143)
T KOG4177|consen 590 ELLLKHGASVNAAD 603 (1143)
T ss_pred HHHHHcCCCCCccc
Confidence 99999998866654
No 218
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=3.5e-14 Score=143.63 Aligned_cols=189 Identities=16% Similarity=0.267 Sum_probs=132.7
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCc-eEEecCCCCCHHHHHHHHHHHHHHcCCc--------
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGIL-------- 229 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~-------- 229 (438)
..|++++|++.+++.|...+. .+..+| +|||||+|+|||++|+++|+.+......
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~----------------~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~ 77 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIA----------------TNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNE 77 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHH----------------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCc
Confidence 469999999999999888744 123344 8999999999999999999988632110
Q ss_pred ----------CCCCEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHH
Q 013706 230 ----------PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEE 292 (438)
Q Consensus 230 ----------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ 292 (438)
....++++++.+. .....++.+++++ ...|++|||+|.|.. ...+.
T Consensus 78 C~sC~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-----------~a~na 140 (614)
T PRK14971 78 CESCVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-----------AAFNA 140 (614)
T ss_pred chHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-----------HHHHH
Confidence 0112333333211 1123566666544 236999999999975 34589
Q ss_pred HHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHH
Q 013706 293 IMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMD 370 (438)
Q Consensus 293 ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~ 370 (438)
|+..|++ ...++|++++.. ..+ .|++++|+ ..++|.+++.+++...+...+.++. ..++.+
T Consensus 141 LLK~LEepp~~tifIL~tt~~--~kI---l~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~eg-----------i~i~~~ 203 (614)
T PRK14971 141 FLKTLEEPPSYAIFILATTEK--HKI---LPTILSRC-QIFDFNRIQVADIVNHLQYVASKEG-----------ITAEPE 203 (614)
T ss_pred HHHHHhCCCCCeEEEEEeCCc--hhc---hHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcC-----------CCCCHH
Confidence 9999987 456666665432 233 67889998 8899999999999999998888752 335667
Q ss_pred HHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 371 AIAALIEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
++..++... .|+.|.+.+.+++.....
T Consensus 204 al~~La~~s-------~gdlr~al~~Lekl~~y~ 230 (614)
T PRK14971 204 ALNVIAQKA-------DGGMRDALSIFDQVVSFT 230 (614)
T ss_pred HHHHHHHHc-------CCCHHHHHHHHHHHHHhc
Confidence 777777755 577788888887765443
No 219
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.59 E-value=7.4e-15 Score=134.90 Aligned_cols=118 Identities=20% Similarity=0.240 Sum_probs=99.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccc-CCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN-MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
.|.||||+|+..|+.+++++|++ .|+++|.++ ..|.||||+|+..|+.+++++|+.+|++++.+|..|.||||+|
T Consensus 69 ~g~TpLh~Aa~~~~~eivklLL~----~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A 144 (300)
T PHA02884 69 SKTNPLIYAIDCDNDDAAKLLIR----YGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELA 144 (300)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH----cCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 69999999999999999999999 799999864 5799999999999999999999999999999999999999999
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~ 137 (438)
+ ..++..++..+. |.. .+..+.+|.+.. ...++.++|..+...
T Consensus 145 ~----~~~~~~~~~~~~--~~~---~~~~~~~~~~~~----~n~ei~~~Lish~vl 187 (300)
T PHA02884 145 L----MICNNFLAFMIC--DNE---ISNFYKHPKKIL----INFDILKILVSHFIL 187 (300)
T ss_pred H----HhCChhHHHHhc--CCc---ccccccChhhhh----ccHHHHHHHHHHHHH
Confidence 8 667777765554 322 466777888432 256788888887764
No 220
>PRK08727 hypothetical protein; Validated
Probab=99.59 E-value=1.3e-13 Score=123.81 Aligned_cols=185 Identities=15% Similarity=0.121 Sum_probs=119.3
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHcc-CcEEEEeCcccccCCC
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE-GGILFVDEAYRLIPMQ 278 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~-~~il~iDEid~l~~~~ 278 (438)
..++|+||||||||.++.+++..+...+. ..+.++..++. ..+.+.++... .-+|+|||++.+....
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~----~~~y~~~~~~~--------~~~~~~~~~l~~~dlLiIDDi~~l~~~~ 109 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGR----SSAYLPLQAAA--------GRLRDALEALEGRSLVALDGLESIAGQR 109 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCC----cEEEEeHHHhh--------hhHHHHHHHHhcCCEEEEeCcccccCCh
Confidence 45999999999999999999998865442 23333333222 12334444433 3699999999887533
Q ss_pred CCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCC--CcceeCCCCCHHHHHHHHHHHHhcccccc
Q 013706 279 KADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTEDS 356 (438)
Q Consensus 279 ~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~--~~~i~~~~~~~~e~~~il~~~l~~~~~~~ 356 (438)
. ....+-.++....+....+|++++..+. .+-..+|.|++|| ...+.|++|+.+++.+|++++..+.
T Consensus 110 ~------~~~~lf~l~n~~~~~~~~vI~ts~~~p~-~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~---- 178 (233)
T PRK08727 110 E------DEVALFDFHNRARAAGITLLYTARQMPD-GLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRR---- 178 (233)
T ss_pred H------HHHHHHHHHHHHHHcCCeEEEECCCChh-hhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHc----
Confidence 2 1122223333332333444454443332 2222378999997 6789999999999999999877653
Q ss_pred ccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHH
Q 013706 357 LLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 431 (438)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~ 431 (438)
+ ..++++++..++... .++.+.+.++++.....+.. .-+.||.+.+++.+.
T Consensus 179 ---~----l~l~~e~~~~La~~~-------~rd~r~~l~~L~~l~~~~~~----------~~~~it~~~~~~~l~ 229 (233)
T PRK08727 179 ---G----LALDEAAIDWLLTHG-------ERELAGLVALLDRLDRESLA----------AKRRVTVPFLRRVLE 229 (233)
T ss_pred ---C----CCCCHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHH----------hCCCCCHHHHHHHHh
Confidence 2 346788888888875 56778888888877653311 113588888877664
No 221
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.59 E-value=6.9e-14 Score=136.89 Aligned_cols=177 Identities=15% Similarity=0.183 Sum_probs=116.6
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccch-HHHHHHHHHc--cCcEEEEeCccccc
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG-PKTRRRIKEA--EGGILFVDEAYRLI 275 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~a--~~~il~iDEid~l~ 275 (438)
..+++||||||+|||.|++++++++.... ....++.+++.++...+..... ..+....+.. ...+|+|||++.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~--~~~~v~yi~~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~ 207 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE--PDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLI 207 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhC--CCCeEEEEEHHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhc
Confidence 35699999999999999999999875422 1235666777766555432110 1122222222 35799999999886
Q ss_pred CCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCCh-hHHHHhhhCcCccCCC--CcceeCCCCCHHHHHHHHHHHHhcc
Q 013706 276 PMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE-PMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQ 352 (438)
Q Consensus 276 ~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~-~~~~~~~~~p~l~~R~--~~~i~~~~~~~~e~~~il~~~l~~~ 352 (438)
.... ...+.+..+-...+.+..++++++... .+..+ .+.+++|| ...+.+.+|+.+.+..|+++.+...
T Consensus 208 ~~~~-----~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l---~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~ 279 (440)
T PRK14088 208 GKTG-----VQTELFHTFNELHDSGKQIVICSDREPQKLSEF---QDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIE 279 (440)
T ss_pred CcHH-----HHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH---HHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhc
Confidence 5321 112344444444455655555553322 22233 67889999 5688999999999999999988753
Q ss_pred ccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706 353 TEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 403 (438)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~ 403 (438)
. ..++++++..++.+. .+|.|.+..++.+....
T Consensus 280 ~-----------~~l~~ev~~~Ia~~~-------~~~~R~L~g~l~~l~~~ 312 (440)
T PRK14088 280 H-----------GELPEEVLNFVAENV-------DDNLRRLRGAIIKLLVY 312 (440)
T ss_pred C-----------CCCCHHHHHHHHhcc-------ccCHHHHHHHHHHHHHH
Confidence 2 346778888888766 67889999998876543
No 222
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.59 E-value=6.9e-15 Score=105.74 Aligned_cols=103 Identities=26% Similarity=0.349 Sum_probs=93.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhh
Q 013706 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW 83 (438)
Q Consensus 4 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 83 (438)
|.-.+.|++.+|.++-|+..+. .|.++|..- .|+||||+|+-.|..+++++|+..|++++.+|+.|-|||..|+
T Consensus 2 ~d~~~~W~vkNG~~DeVk~~v~----~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAv- 75 (117)
T KOG4214|consen 2 GDMSVAWNVKNGEIDEVKQSVN----EGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAV- 75 (117)
T ss_pred cchhHhhhhccCcHHHHHHHHH----ccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHH-
Confidence 4456789999999999999887 677888654 8999999999999999999999999999999999999999999
Q ss_pred cccccCcHHHHHHHHhCCCCCcccCCCCCccc
Q 013706 84 YSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115 (438)
Q Consensus 84 ~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l 115 (438)
..||.+++++||+.|++-.....+|.+.+
T Consensus 76 ---wEGH~~cVklLL~~GAdrt~~~PdG~~~~ 104 (117)
T KOG4214|consen 76 ---WEGHRDCVKLLLQNGADRTIHAPDGTALI 104 (117)
T ss_pred ---HHhhHHHHHHHHHcCcccceeCCCchhHH
Confidence 78999999999999999998888887776
No 223
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.58 E-value=5e-14 Score=138.72 Aligned_cols=153 Identities=22% Similarity=0.283 Sum_probs=104.3
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHc-------------
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV------------- 226 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~------------- 226 (438)
+|+++.|++.+++.+.-. .....+++|+||||||||++|+.++..+...
T Consensus 190 d~~dv~Gq~~~~~al~~a------------------a~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s 251 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIA------------------AAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWS 251 (499)
T ss_pred CHHHhcCcHHHHhhhhhh------------------ccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEecccccc
Confidence 789999999887766543 2345789999999999999999998754210
Q ss_pred --C------CcCCCCEEEeecccccccccccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhcc
Q 013706 227 --G------ILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD 298 (438)
Q Consensus 227 --~------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~ 298 (438)
+ .....||...+.+......+|.........+..|.+|||||||++.+.+ .++..|++.|+
T Consensus 252 ~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~-----------~~~~~L~~~LE 320 (499)
T TIGR00368 252 LVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKR-----------SVLDALREPIE 320 (499)
T ss_pred chhhhccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCH-----------HHHHHHHHHHH
Confidence 0 0123455544444333334443322334567899999999999998875 45578888886
Q ss_pred CC---------------CEEEEEecCChhH------------------HHHhhhCcCccCCCCcceeCCCCCHHHH
Q 013706 299 GG---------------KVVVIFAGYSEPM------------------KRVIASNEGFCRRVTKFFHFNDFNSEEL 341 (438)
Q Consensus 299 ~~---------------~v~vi~~~~~~~~------------------~~~~~~~p~l~~R~~~~i~~~~~~~~e~ 341 (438)
++ ++.+|+++++.+- .......++|++|||..+.+++++.+++
T Consensus 321 ~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l 396 (499)
T TIGR00368 321 DGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKL 396 (499)
T ss_pred cCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHH
Confidence 54 3678888876420 0122336789999999999998876543
No 224
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=1.4e-14 Score=142.25 Aligned_cols=207 Identities=20% Similarity=0.233 Sum_probs=146.6
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHcc---CcEEEEeCcccc
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRL 274 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l 274 (438)
-.+.+||+|+||||||++++++|++++. ++++++|.++..+..++++.++...|..|+ ++|||+-.+|.+
T Consensus 430 ~~~~vLLhG~~g~GK~t~V~~vas~lg~-------h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl 502 (953)
T KOG0736|consen 430 LNPSVLLHGPPGSGKTTVVRAVASELGL-------HLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVL 502 (953)
T ss_pred cceEEEEeCCCCCChHHHHHHHHHHhCC-------ceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEecccee
Confidence 3457999999999999999999999988 999999999999999999999999999885 589999999999
Q ss_pred cCCCCCCCchhHHHHHHHHHhhcc-----CCCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHH
Q 013706 275 IPMQKADDKDYGIEALEEIMSVMD-----GGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKM 349 (438)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~ll~~~~-----~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l 349 (438)
.-++.++..--...+++.++. .| ...++||+++++. +.+ .|.+++-|...|.++.|+.+||.+||+-++
T Consensus 503 ~id~dgged~rl~~~i~~~ls-~e~~~~~~~~~ivv~t~~s~--~~l---p~~i~~~f~~ei~~~~lse~qRl~iLq~y~ 576 (953)
T KOG0736|consen 503 GIDQDGGEDARLLKVIRHLLS-NEDFKFSCPPVIVVATTSSI--EDL---PADIQSLFLHEIEVPALSEEQRLEILQWYL 576 (953)
T ss_pred eecCCCchhHHHHHHHHHHHh-cccccCCCCceEEEEecccc--ccC---CHHHHHhhhhhccCCCCCHHHHHHHHHHHH
Confidence 865554333333455555555 22 2457777775443 322 677888888999999999999999999999
Q ss_pred hccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccC-----CCC--C----hhhh
Q 013706 350 NNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSF-----DCL--D----TDEL 418 (438)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~-----~~~--~----~~~~ 418 (438)
.... ++.++....++..+.+.+ -+++..++..+-+.+..|+.. ... + ....
T Consensus 577 ~~~~---------~n~~v~~k~~a~~t~gfs---------~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~ 638 (953)
T KOG0736|consen 577 NHLP---------LNQDVNLKQLARKTSGFS---------FGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAG 638 (953)
T ss_pred hccc---------cchHHHHHHHHHhcCCCC---------HHHHHHHhcCchHHHHHHHHhhcccccchhcccccccccc
Confidence 8753 334444444444444333 344555554443333333211 000 1 1123
Q ss_pred hhccHHHHHHHHHHHHh
Q 013706 419 RTITLEDLEAGLKLLLR 435 (438)
Q Consensus 419 ~~i~~~d~~~a~~~~~~ 435 (438)
..++++||..|+..++.
T Consensus 639 ~~l~~edf~kals~~~~ 655 (953)
T KOG0736|consen 639 FLLTEEDFDKALSRLQK 655 (953)
T ss_pred ceecHHHHHHHHHHHHH
Confidence 58999999999998875
No 225
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.56 E-value=1.5e-14 Score=147.93 Aligned_cols=232 Identities=21% Similarity=0.139 Sum_probs=140.5
Q ss_pred HhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHH----------cCC--
Q 013706 161 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM----------VGI-- 228 (438)
Q Consensus 161 l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~----------~~~-- 228 (438)
|..|+|++.++..+.-.. + .....++||.||||||||++||+|++.+.. +..
T Consensus 3 f~~ivGq~~~~~al~~~a--v--------------~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~ 66 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNA--V--------------DPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDD 66 (633)
T ss_pred cchhcChHHHHHHHHHHh--h--------------CCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCC
Confidence 568999999887765331 1 123357999999999999999999998720 000
Q ss_pred ----------------cCCCCEEEeecccccccccccc--hH--------HHHHHHHHccCcEEEEeCcccccCCCCCCC
Q 013706 229 ----------------LPTDRVTEVQRTDLVGEFVGHT--GP--------KTRRRIKEAEGGILFVDEAYRLIPMQKADD 282 (438)
Q Consensus 229 ----------------~~~~~~~~~~~~~~~~~~~g~~--~~--------~~~~~~~~a~~~il~iDEid~l~~~~~~~~ 282 (438)
....+|+.+........++|.. .. .....+.+|.+|||||||++.+.+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~----- 141 (633)
T TIGR02442 67 PEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDH----- 141 (633)
T ss_pred ccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHH-----
Confidence 1134777766654444455542 11 1134566778899999999999874
Q ss_pred chhHHHHHHHHHhhccCCC---------------EEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCC-HHHHHHHHH
Q 013706 283 KDYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN-SEELAKILH 346 (438)
Q Consensus 283 ~~~~~~~~~~ll~~~~~~~---------------v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~-~~e~~~il~ 346 (438)
+++.|+..|+.+. +.+|+++++..- . ..++|++||+..|.++.+. .+++.++++
T Consensus 142 ------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg-~---l~~~L~dR~~l~i~v~~~~~~~~~~~il~ 211 (633)
T TIGR02442 142 ------LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEG-D---LRPQLLDRFGLCVDVAAPRDPEERVEIIR 211 (633)
T ss_pred ------HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCC-C---CCHHHHhhcceEEEccCCCchHHHHHHHH
Confidence 4589999987652 566776554321 1 2678999999999998876 577788887
Q ss_pred HHHhcccccc-----------------cc-ccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccc
Q 013706 347 IKMNNQTEDS-----------------LL-YGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRL 408 (438)
Q Consensus 347 ~~l~~~~~~~-----------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~ 408 (438)
+.+....... .. ..+.-...++++.+..+...+.... ....|....++.-|.-.|+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~---i~s~Ra~i~~~r~Ara~Aa--- 285 (633)
T TIGR02442 212 RRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFG---VDGHRADIVMARAARALAA--- 285 (633)
T ss_pred HHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhC---CCCccHHHHHHHHHHHHHH---
Confidence 6443110000 00 0000112345555555555443110 0012333334343333332
Q ss_pred cCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706 409 SFDCLDTDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 409 ~~~~~~~~~~~~i~~~d~~~a~~~~~~ 435 (438)
-++...|+.+|+.+|+..+.+
T Consensus 286 ------L~gr~~V~~~Dv~~A~~lvL~ 306 (633)
T TIGR02442 286 ------LDGRRRVTAEDVREAAELVLP 306 (633)
T ss_pred ------HcCCCcCCHHHHHHHHHHHhh
Confidence 234578999999999987754
No 226
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.56 E-value=6.3e-15 Score=155.28 Aligned_cols=123 Identities=32% Similarity=0.299 Sum_probs=102.6
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccc--------------CCCChHHHHHHHcCCHHHHHHHHHCCCCcc
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN--------------MYGETPLHMAAKNGCNEAAKLLLAHGAFIE 68 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d--------------~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~ 68 (438)
.|.||||+||.+|+.++|++|++ .|++++.++ ..|+||||+|+..|+.+++++|+++|+|+|
T Consensus 127 ~G~TpLhlAa~~~~~eiVklLL~----~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin 202 (743)
T TIGR00870 127 PGITALHLAAHRQNYEIVKLLLE----RGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADIL 202 (743)
T ss_pred CCCcHHHHHHHhCCHHHHHHHHh----CCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchh
Confidence 59999999999999999999999 678887653 369999999999999999999999999999
Q ss_pred cccCCCCcHHHHHhhcccccC---------cHHHHHHHHhCCCC---C----cccCCCCCccccccccCCCchhHHHHHH
Q 013706 69 AKANNGMTPLHLSVWYSIRSE---------DYATVKTLLEYNAD---C----SAKDNEGKTPLDHLSNGPGSAKLRELLL 132 (438)
Q Consensus 69 ~~~~~g~t~L~~A~~~~~~~~---------~~~~~~~Ll~~ga~---~----~~~d~~g~t~l~~~a~~~~~~~~~~lL~ 132 (438)
.+|..|+||||+|+ ..+ ...+.++++..++. + +..|.+|.||+ +.|+..++.+++++|+
T Consensus 203 ~~d~~g~T~Lh~A~----~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL-~~A~~~g~~~l~~lLL 277 (743)
T TIGR00870 203 TADSLGNTLLHLLV----MENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPL-KLAAKEGRIVLFRLKL 277 (743)
T ss_pred hHhhhhhHHHHHHH----hhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCch-hhhhhcCCccHHHHHH
Confidence 99999999999999 443 22344555554444 3 67799999999 6666678888999888
Q ss_pred hc
Q 013706 133 WH 134 (438)
Q Consensus 133 ~~ 134 (438)
..
T Consensus 278 ~~ 279 (743)
T TIGR00870 278 AI 279 (743)
T ss_pred HH
Confidence 64
No 227
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.56 E-value=2.7e-14 Score=144.52 Aligned_cols=149 Identities=12% Similarity=0.178 Sum_probs=97.9
Q ss_pred HHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-----------------------CEEEEEecCChhH
Q 013706 257 RIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----------------------KVVVIFAGYSEPM 313 (438)
Q Consensus 257 ~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-----------------------~v~vi~~~~~~~~ 313 (438)
.+.+|.+|+|||||++.|.+..| ..|++.|+++ ++.+|++++++..
T Consensus 212 ~L~~AngGtL~Ldei~~L~~~~q-----------~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l 280 (608)
T TIGR00764 212 AIHRAHKGVLYIDEIKTMPLEVQ-----------QYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDL 280 (608)
T ss_pred ceEECCCCEEEEEChHhCCHHHH-----------HHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHH
Confidence 45667789999999999986443 6777776532 4678888777644
Q ss_pred HHHhhhCcCccCCCC---cceeCCC---CCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhH-h--h
Q 013706 314 KRVIASNEGFCRRVT---KFFHFND---FNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE-K--Q 384 (438)
Q Consensus 314 ~~~~~~~p~l~~R~~---~~i~~~~---~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~ 384 (438)
..+ +|+|++||+ ..+.|+. .+.+.+..+++. +.+..+ .....+.++.++++.+++++... . .
T Consensus 281 ~~l---~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~-i~~~~~-----r~G~l~~~s~~Av~~Li~~~~R~ag~r~ 351 (608)
T TIGR00764 281 EGM---HPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQF-VAQEVK-----KDGRIPHFTRDAVEEIVREAQRRAGRKD 351 (608)
T ss_pred hhc---CHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHH-HHHHHH-----HhCCCCcCCHHHHHHHHHHHHHHHhccc
Confidence 444 999999998 6666643 345555555543 333221 11122468999999999876532 1 1
Q ss_pred hccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706 385 RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 434 (438)
Q Consensus 385 ~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~ 434 (438)
.-+.+.|++.+++..|...+.. +....|+.+|+.+|++.-.
T Consensus 352 ~lsl~~R~L~~llR~A~~iA~~---------~~~~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 352 HLTLRLRELGGLVRAAGDIAKS---------SGKVYVTAEHVLKAKKLAK 392 (608)
T ss_pred ccCCCHHHHHHHHHHHHHHHHh---------cCCceecHHHHHHHHHHHH
Confidence 2245678999999888544411 1235799999999887543
No 228
>PRK05642 DNA replication initiation factor; Validated
Probab=99.55 E-value=1.9e-13 Score=122.83 Aligned_cols=185 Identities=11% Similarity=0.151 Sum_probs=122.2
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHcc-CcEEEEeCcccccCC
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE-GGILFVDEAYRLIPM 277 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~-~~il~iDEid~l~~~ 277 (438)
..+++|+||+|||||.|++++++++...+ ..++.++..++.... ...++... .-+|+||+++.+..+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~----~~v~y~~~~~~~~~~--------~~~~~~~~~~d~LiiDDi~~~~~~ 112 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRG----EPAVYLPLAELLDRG--------PELLDNLEQYELVCLDDLDVIAGK 112 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCC----CcEEEeeHHHHHhhh--------HHHHHhhhhCCEEEEechhhhcCC
Confidence 46789999999999999999999875433 245566666654321 12222222 258999999988653
Q ss_pred CCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCC--CcceeCCCCCHHHHHHHHHHHHhccccc
Q 013706 278 QKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTED 355 (438)
Q Consensus 278 ~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~--~~~i~~~~~~~~e~~~il~~~l~~~~~~ 355 (438)
.+ ......+.+-...+.+..+++++++.++.... ..|.|++|| ...+.+.+|+.+++.++++......
T Consensus 113 ~~-----~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~--~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~--- 182 (234)
T PRK05642 113 AD-----WEEALFHLFNRLRDSGRRLLLAASKSPRELPI--KLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRR--- 182 (234)
T ss_pred hH-----HHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCc--cCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc---
Confidence 22 11223333333445577777777655543322 279999999 6788899999999999999765442
Q ss_pred cccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHH
Q 013706 356 SLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL 430 (438)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~ 430 (438)
+ ..++++++..++.+. .+++|.+.+++++..+.+. ..-++||..-+++++
T Consensus 183 ----~----~~l~~ev~~~L~~~~-------~~d~r~l~~~l~~l~~~~l----------~~~~~it~~~~~~~L 232 (234)
T PRK05642 183 ----G----LHLTDEVGHFILTRG-------TRSMSALFDLLERLDQASL----------QAQRKLTIPFLKETL 232 (234)
T ss_pred ----C----CCCCHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHH----------HcCCcCCHHHHHHHh
Confidence 2 346778888888876 6788999999887764321 011346666666554
No 229
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.55 E-value=3.6e-15 Score=145.37 Aligned_cols=123 Identities=33% Similarity=0.366 Sum_probs=116.3
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
+|+|.||.||.+|+.+++++|++ ..+-++..|..|.+|||+|++.|+.++++.++.++..+|+.+..|.||||.|+
T Consensus 48 ~gfTalhha~Lng~~~is~llle----~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaa 123 (854)
T KOG0507|consen 48 SGFTLLHHAVLNGQNQISKLLLD----YEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAA 123 (854)
T ss_pred cchhHHHHHHhcCchHHHHHHhc----chhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhh
Confidence 79999999999999999999999 57778889999999999999999999999999999999999999999999999
Q ss_pred hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhc
Q 013706 83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~ 134 (438)
.+|+.+++.+||.+|+++.++|+.+.|++ -+|+..+...++++|+..
T Consensus 124 ----qhgh~dvv~~Ll~~~adp~i~nns~~t~l-dlA~qfgr~~Vvq~ll~~ 170 (854)
T KOG0507|consen 124 ----QHGHLEVVFYLLKKNADPFIRNNSKETVL-DLASRFGRAEVVQMLLQK 170 (854)
T ss_pred ----hhcchHHHHHHHhcCCCccccCcccccHH-HHHHHhhhhHHHHHHhhh
Confidence 99999999999999999999999999999 777778899999988765
No 230
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.55 E-value=1.7e-13 Score=123.69 Aligned_cols=133 Identities=20% Similarity=0.244 Sum_probs=83.4
Q ss_pred CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-CCEEEEEecCChh-------HHHHhhhCcCccCCCCcceeCC
Q 013706 263 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEP-------MKRVIASNEGFCRRVTKFFHFN 334 (438)
Q Consensus 263 ~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~v~vi~~~~~~~-------~~~~~~~~p~l~~R~~~~i~~~ 334 (438)
+|||||||+|.|-- +....|-+.|++ -.-++|+|||+-- +..-.-.+..|++|+ .+|...
T Consensus 292 pGVLFIDEvHmLDI-----------E~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl-lII~t~ 359 (450)
T COG1224 292 PGVLFIDEVHMLDI-----------ECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRL-LIISTR 359 (450)
T ss_pred cceEEEechhhhhH-----------HHHHHHHHHhhcccCcEEEEEcCCceeeecccCCcCCCCCCHhhhhhe-eEEecC
Confidence 38999999988743 666788888887 2344555543211 110001124678898 899999
Q ss_pred CCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCC
Q 013706 335 DFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLD 414 (438)
Q Consensus 335 ~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~ 414 (438)
+|+.+|+.+|++.....+. ..+++++++.++.--. ..+.|-..+++.-|...|..|
T Consensus 360 py~~~EireIi~iRa~ee~-----------i~l~~~Ale~L~~ig~------etSLRYa~qLL~pa~iiA~~r------- 415 (450)
T COG1224 360 PYSREEIREIIRIRAKEED-----------IELSDDALEYLTDIGE------ETSLRYAVQLLTPASIIAKRR------- 415 (450)
T ss_pred CCCHHHHHHHHHHhhhhhc-----------cccCHHHHHHHHhhch------hhhHHHHHHhccHHHHHHHHh-------
Confidence 9999999999999887753 5578889888877433 222344455655454444222
Q ss_pred hhhhhhccHHHHHHHHHHH
Q 013706 415 TDELRTITLEDLEAGLKLL 433 (438)
Q Consensus 415 ~~~~~~i~~~d~~~a~~~~ 433 (438)
+...|..+|+++|.+.|
T Consensus 416 --g~~~V~~~dVe~a~~lF 432 (450)
T COG1224 416 --GSKRVEVEDVERAKELF 432 (450)
T ss_pred --CCCeeehhHHHHHHHHH
Confidence 22345555665555443
No 231
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.55 E-value=8.2e-14 Score=130.53 Aligned_cols=157 Identities=21% Similarity=0.309 Sum_probs=100.7
Q ss_pred HhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcC--------CC
Q 013706 161 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP--------TD 232 (438)
Q Consensus 161 l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~--------~~ 232 (438)
|..++|++.+|..+.-.+ + .+...+++|.|+||||||+++|+++..+....... ..
T Consensus 3 f~~ivgq~~~~~al~~~~--~--------------~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~ 66 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNV--I--------------DPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSD 66 (337)
T ss_pred ccccccHHHHHHHHHHHh--c--------------CCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCC
Confidence 567899999988765321 1 12356899999999999999999998772100000 00
Q ss_pred -------------------------CEEEeecccccccccccch--HH--------HHHHHHHccCcEEEEeCcccccCC
Q 013706 233 -------------------------RVTEVQRTDLVGEFVGHTG--PK--------TRRRIKEAEGGILFVDEAYRLIPM 277 (438)
Q Consensus 233 -------------------------~~~~~~~~~~~~~~~g~~~--~~--------~~~~~~~a~~~il~iDEid~l~~~ 277 (438)
+++.+........++|... +. ....+.+|.+++|||||++.+.+.
T Consensus 67 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~ 146 (337)
T TIGR02030 67 PEMMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDH 146 (337)
T ss_pred ccccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHH
Confidence 1111111111113334311 11 123566788899999999999874
Q ss_pred CCCCCchhHHHHHHHHHhhccCCC---------------EEEEEecCChhHH-HHhhhCcCccCCCCcceeCCCCCH-HH
Q 013706 278 QKADDKDYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMK-RVIASNEGFCRRVTKFFHFNDFNS-EE 340 (438)
Q Consensus 278 ~~~~~~~~~~~~~~~ll~~~~~~~---------------v~vi~~~~~~~~~-~~~~~~p~l~~R~~~~i~~~~~~~-~e 340 (438)
. ++.|++.|+++. +++|++.+ +.+ .+ .++|++||...+.++.|+. ++
T Consensus 147 ~-----------Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~n--p~eg~l---~~~LldRf~l~i~l~~p~~~ee 210 (337)
T TIGR02030 147 L-----------VDVLLDVAASGWNVVEREGISIRHPARFVLVGSGN--PEEGEL---RPQLLDRFGLHAEIRTVRDVEL 210 (337)
T ss_pred H-----------HHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccc--cccCCC---CHHHHhhcceEEECCCCCCHHH
Confidence 4 488888886542 34444433 323 22 7889999999999999986 88
Q ss_pred HHHHHHHHH
Q 013706 341 LAKILHIKM 349 (438)
Q Consensus 341 ~~~il~~~l 349 (438)
+.+|+++..
T Consensus 211 r~eIL~~~~ 219 (337)
T TIGR02030 211 RVEIVERRT 219 (337)
T ss_pred HHHHHHhhh
Confidence 899998743
No 232
>PRK09087 hypothetical protein; Validated
Probab=99.55 E-value=1.4e-13 Score=122.66 Aligned_cols=179 Identities=12% Similarity=0.086 Sum_probs=120.1
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHccCcEEEEeCcccccCCC
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQ 278 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~ 278 (438)
.+.++|+||+|+|||.+++++++.... ..++..++.. ..+.......|+|||++.+...
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~---------~~i~~~~~~~-----------~~~~~~~~~~l~iDDi~~~~~~- 102 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDA---------LLIHPNEIGS-----------DAANAAAEGPVLIEDIDAGGFD- 102 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCC---------EEecHHHcch-----------HHHHhhhcCeEEEECCCCCCCC-
Confidence 345899999999999999999875321 2233222221 1223333478999999977321
Q ss_pred CCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCC--CcceeCCCCCHHHHHHHHHHHHhcccccc
Q 013706 279 KADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTEDS 356 (438)
Q Consensus 279 ~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~--~~~i~~~~~~~~e~~~il~~~l~~~~~~~ 356 (438)
+ ......+-...+.++.+++.+++.++.... ..|.|++|| ...+++.+|+.+++.+++++.+....
T Consensus 103 ~-------~~lf~l~n~~~~~g~~ilits~~~p~~~~~--~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~--- 170 (226)
T PRK09087 103 E-------TGLFHLINSVRQAGTSLLMTSRLWPSSWNV--KLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQ--- 170 (226)
T ss_pred H-------HHHHHHHHHHHhCCCeEEEECCCChHHhcc--ccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcC---
Confidence 1 133344444445577777777665554433 268899999 58999999999999999999997642
Q ss_pred ccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706 357 LLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 435 (438)
..++++++..++.+. .++.+.+..++++..+.+ ...-+.+|...++++++.+.-
T Consensus 171 --------~~l~~ev~~~La~~~-------~r~~~~l~~~l~~L~~~~----------~~~~~~it~~~~~~~l~~~~~ 224 (226)
T PRK09087 171 --------LYVDPHVVYYLVSRM-------ERSLFAAQTIVDRLDRLA----------LERKSRITRALAAEVLNEMGQ 224 (226)
T ss_pred --------CCCCHHHHHHHHHHh-------hhhHHHHHHHHHHHHHHH----------HHhCCCCCHHHHHHHHHhhcc
Confidence 346788888888876 456666766666554433 112256888888888887643
No 233
>PRK06620 hypothetical protein; Validated
Probab=99.54 E-value=7.9e-14 Score=123.13 Aligned_cols=167 Identities=12% Similarity=0.076 Sum_probs=111.1
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHccCcEEEEeCcccccCCCC
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQK 279 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~ 279 (438)
..++||||||+|||.+++++++.... .++. .... ....+ ....+|+|||||.+. +
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~-----------~~~~~--~~~d~lliDdi~~~~---~ 99 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFF-----------NEEIL--EKYNAFIIEDIENWQ---E 99 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhh-----------chhHH--hcCCEEEEeccccch---H
Confidence 67999999999999999998875421 1111 0000 00111 234799999999541 0
Q ss_pred CCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCC--CcceeCCCCCHHHHHHHHHHHHhccccccc
Q 013706 280 ADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTEDSL 357 (438)
Q Consensus 280 ~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~--~~~i~~~~~~~~e~~~il~~~l~~~~~~~~ 357 (438)
......+-...+.+..+++++++.++.. .. |+|++|+ ..++.+.+|+.+++..++++.....
T Consensus 100 -------~~lf~l~N~~~e~g~~ilits~~~p~~l---~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~----- 163 (214)
T PRK06620 100 -------PALLHIFNIINEKQKYLLLTSSDKSRNF---TL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS----- 163 (214)
T ss_pred -------HHHHHHHHHHHhcCCEEEEEcCCCcccc---ch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc-----
Confidence 1233333333466777777777666632 23 7899999 3489999999999999999887753
Q ss_pred cccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHH
Q 013706 358 LYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL 430 (438)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~ 430 (438)
+ ..++++++..++.+. .++.|.+.++++.....+. ...+.||.+.+++++
T Consensus 164 --~----l~l~~ev~~~L~~~~-------~~d~r~l~~~l~~l~~~~~----------~~~~~it~~~~~~~l 213 (214)
T PRK06620 164 --S----VTISRQIIDFLLVNL-------PREYSKIIEILENINYFAL----------ISKRKITISLVKEVL 213 (214)
T ss_pred --C----CCCCHHHHHHHHHHc-------cCCHHHHHHHHHHHHHHHH----------HcCCCCCHHHHHHHh
Confidence 2 346778888888876 6888999999888643321 112457777777665
No 234
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.54 E-value=3.1e-13 Score=132.45 Aligned_cols=181 Identities=11% Similarity=0.089 Sum_probs=120.0
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccch---HHHHHHHHHc-cCcEEEEeCcccc
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG---PKTRRRIKEA-EGGILFVDEAYRL 274 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~a-~~~il~iDEid~l 274 (438)
..+++||||+|+|||.|++++++++.... ....++.+++.++...+..... ..+....+.. ..-+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~--~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNF--SDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhC--CCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccc
Confidence 45799999999999999999999875321 1235667777776665443211 1222333332 3369999999988
Q ss_pred cCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCC--CcceeCCCCCHHHHHHHHHHHHhcc
Q 013706 275 IPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQ 352 (438)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~--~~~i~~~~~~~~e~~~il~~~l~~~ 352 (438)
..+.. ........+-..++.++.+|+.+........ ..++.|++|| +..+.+.+|+.+++.+|+++.+...
T Consensus 219 ~~k~~-----~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~--~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~ 291 (450)
T PRK14087 219 SYKEK-----TNEIFFTIFNNFIENDKQLFFSSDKSPELLN--GFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQ 291 (450)
T ss_pred cCCHH-----HHHHHHHHHHHHHHcCCcEEEECCCCHHHHh--hccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhc
Confidence 64321 1122333333334555544444433332222 2278899999 6789999999999999999998763
Q ss_pred ccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 353 TEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
|+ ...++++++..++... .++.|.+.+++.++...+
T Consensus 292 -------gl--~~~l~~evl~~Ia~~~-------~gd~R~L~gaL~~l~~~a 327 (450)
T PRK14087 292 -------NI--KQEVTEEAINFISNYY-------SDDVRKIKGSVSRLNFWS 327 (450)
T ss_pred -------CC--CCCCCHHHHHHHHHcc-------CCCHHHHHHHHHHHHHHH
Confidence 22 1257888888888876 688999999999887444
No 235
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.53 E-value=4.9e-15 Score=128.85 Aligned_cols=120 Identities=29% Similarity=0.350 Sum_probs=104.0
Q ss_pred HHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcH
Q 013706 12 AGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDY 91 (438)
Q Consensus 12 ~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~ 91 (438)
|..|+.--|++.|+. ..-+.|.-|..|.+||||||..||..+++.|+.+|+.+|..+.-..||||+|+ .+|+.
T Consensus 8 cregna~qvrlwld~---tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaa----ahghr 80 (448)
T KOG0195|consen 8 CREGNAFQVRLWLDD---TEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAA----AHGHR 80 (448)
T ss_pred hhcCCeEEEEEEecC---cccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhh----hcccH
Confidence 445555556666662 56788999999999999999999999999999999999999999999999999 89999
Q ss_pred HHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHH
Q 013706 92 ATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 139 (438)
Q Consensus 92 ~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~ 139 (438)
+++..|+...+|+|.++..|+||| |.+|-++...+.+=|...|+...
T Consensus 81 divqkll~~kadvnavnehgntpl-hyacfwgydqiaedli~~ga~v~ 127 (448)
T KOG0195|consen 81 DIVQKLLSRKADVNAVNEHGNTPL-HYACFWGYDQIAEDLISCGAAVN 127 (448)
T ss_pred HHHHHHHHHhcccchhhccCCCch-hhhhhhcHHHHHHHHHhccceee
Confidence 999999999999999999999999 55555788888888887776543
No 236
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.53 E-value=2.9e-14 Score=141.60 Aligned_cols=183 Identities=20% Similarity=0.237 Sum_probs=130.1
Q ss_pred CCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc-----ccccchH-------HHHHHHHHccCc
Q 013706 197 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-----FVGHTGP-------KTRRRIKEAEGG 264 (438)
Q Consensus 197 ~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~-------~~~~~~~~a~~~ 264 (438)
.....++++|++||||+++|++++... .....+|+.++|+.+... .+|+... .....+..|.+|
T Consensus 160 ~~~~~vli~ge~g~gk~~~a~~ih~~s----~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 235 (441)
T PRK10365 160 PSEATVLIHGDSGTGKELVARAIHASS----ARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235 (441)
T ss_pred CCCCeEEEEecCCCCHHHHHHHHHHcC----CCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCC
Confidence 355789999999999999999999843 334569999999865332 3443211 112346778899
Q ss_pred EEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-------------CEEEEEecCChhHHHHhh--hCcCccCCC-C
Q 013706 265 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------------KVVVIFAGYSEPMKRVIA--SNEGFCRRV-T 328 (438)
Q Consensus 265 il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------------~v~vi~~~~~~~~~~~~~--~~p~l~~R~-~ 328 (438)
+||||||+.|.+..| ..|+..++++ ++.+|++|+.+....+.. ..+.|..|+ .
T Consensus 236 tl~ldei~~l~~~~q-----------~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~ 304 (441)
T PRK10365 236 TLFLDEIGDISPMMQ-----------VRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNV 304 (441)
T ss_pred EEEEeccccCCHHHH-----------HHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhcc
Confidence 999999999998555 7888888764 346888877766544311 112233355 4
Q ss_pred cceeCCCCCH--HHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 329 KFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 329 ~~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
..|.+|++.. +++..++..++.+.... ++ .-...++++++..+..+.| |||.|+|++++++++..+
T Consensus 305 ~~i~~ppLreR~~Di~~l~~~~l~~~~~~---~~-~~~~~~~~~a~~~L~~~~w------pgN~reL~~~~~~~~~~~ 372 (441)
T PRK10365 305 VAIEVPSLRQRREDIPLLAGHFLQRFAER---NR-KAVKGFTPQAMDLLIHYDW------PGNIRELENAVERAVVLL 372 (441)
T ss_pred ceecCCChhhcchhHHHHHHHHHHHHHHH---hC-CCCCCcCHHHHHHHHhCCC------CCHHHHHHHHHHHHHHhC
Confidence 5677777764 68888999998875421 11 1123478999999999999 999999999999988654
No 237
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.53 E-value=2.3e-13 Score=134.81 Aligned_cols=176 Identities=16% Similarity=0.193 Sum_probs=117.5
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHH--ccCcEEEEeCcccccCC
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE--AEGGILFVDEAYRLIPM 277 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--a~~~il~iDEid~l~~~ 277 (438)
..++|||++|+|||.|+.++++++... .....++.++..++..++...........|.+ ....+|+|||++.+..+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~--~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gk 392 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRL--YPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDK 392 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHh--CCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCC
Confidence 359999999999999999999988541 11235677777777666543322211122322 13479999999998754
Q ss_pred CCCCCchhHHHHHHHHHhhccCCCEEEEEecCC-hhHHHHhhhCcCccCCC--CcceeCCCCCHHHHHHHHHHHHhcccc
Q 013706 278 QKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS-EPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQTE 354 (438)
Q Consensus 278 ~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~-~~~~~~~~~~p~l~~R~--~~~i~~~~~~~~e~~~il~~~l~~~~~ 354 (438)
.. ....+++.|-...+.++-+||.++.. ..+.. .++.|++|| ..++.+..|+.+.+..||++......
T Consensus 393 e~-----tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~---l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~- 463 (617)
T PRK14086 393 ES-----TQEEFFHTFNTLHNANKQIVLSSDRPPKQLVT---LEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQ- 463 (617)
T ss_pred HH-----HHHHHHHHHHHHHhcCCCEEEecCCChHhhhh---ccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcC-
Confidence 32 11233343334444455555544332 22222 378899999 77889999999999999999887642
Q ss_pred ccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706 355 DSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 403 (438)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~ 403 (438)
..++++++..++.+. ..|.|.|..++.+....
T Consensus 464 ----------l~l~~eVi~yLa~r~-------~rnvR~LegaL~rL~a~ 495 (617)
T PRK14086 464 ----------LNAPPEVLEFIASRI-------SRNIRELEGALIRVTAF 495 (617)
T ss_pred ----------CCCCHHHHHHHHHhc-------cCCHHHHHHHHHHHHHH
Confidence 446778888888876 57788888888876543
No 238
>PHA02792 ankyrin-like protein; Provisional
Probab=99.53 E-value=3.1e-14 Score=141.08 Aligned_cols=108 Identities=15% Similarity=0.071 Sum_probs=96.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCC--ChHHHHHHHcCCH---HHHHHHHHCCCCcccccCCCCcHH
Q 013706 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYG--ETPLHMAAKNGCN---EAAKLLLAHGAFIEAKANNGMTPL 78 (438)
Q Consensus 4 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g--~t~L~~A~~~g~~---~~v~~Ll~~g~~~~~~~~~g~t~L 78 (438)
...++|.||..|+.++|++|++ .|++++.+|..| .||||+|+..... +++++|+++|+++|.+|..|+|||
T Consensus 339 ~~n~~~~Aa~~gn~eIVelLIs----~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPL 414 (631)
T PHA02792 339 HINKYFQKFDNRDPKVVEYILK----NGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSIL 414 (631)
T ss_pred cchHHHHHHHcCCHHHHHHHHH----cCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchH
Confidence 4567899999999999999999 799999999775 6999998776654 457889999999999999999999
Q ss_pred HHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccc
Q 013706 79 HLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS 119 (438)
Q Consensus 79 ~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a 119 (438)
|+|+ ..++.+++++|+++|++++.+|..|.||+++++
T Consensus 415 h~Aa----~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~ 451 (631)
T PHA02792 415 YYCI----ESHSVSLVEWLIDNGADINITTKYGSTCIGICV 451 (631)
T ss_pred HHHH----HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 9999 889999999999999999999999999995553
No 239
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.52 E-value=2.5e-14 Score=141.30 Aligned_cols=124 Identities=33% Similarity=0.416 Sum_probs=109.6
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccc-----------------------cCCCChHHHHHHHcCCHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ-----------------------NMYGETPLHMAAKNGCNEAAK 58 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-----------------------d~~g~t~L~~A~~~g~~~~v~ 58 (438)
+.|+||||+|+.+.+.++|++|++ .|+||+++ -..|+.||-+||.-++.+|++
T Consensus 182 Y~GqSaLHiAIv~~~~~~V~lLl~----~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivr 257 (782)
T KOG3676|consen 182 YYGQSALHIAIVNRDAELVRLLLA----AGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVR 257 (782)
T ss_pred hcCcchHHHHHHhccHHHHHHHHH----cCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHH
Confidence 469999999999999999999999 77887754 235889999999999999999
Q ss_pred HHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCC--CcccCCCCCccccccccCCCchhHHHHHHhc
Q 013706 59 LLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD--CSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134 (438)
Q Consensus 59 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~--~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~ 134 (438)
+|+++|||++++|.+|+|.||..+ ..-..++-.+++++|++ ..++|..|-||| -+|++-+..++.+.++..
T Consensus 258 lLl~~gAd~~aqDS~GNTVLH~lV----i~~~~~My~~~L~~ga~~l~~v~N~qgLTPL-tLAaklGk~emf~~ile~ 330 (782)
T KOG3676|consen 258 LLLAHGADPNAQDSNGNTVLHMLV----IHFVTEMYDLALELGANALEHVRNNQGLTPL-TLAAKLGKKEMFQHILER 330 (782)
T ss_pred HHHhcCCCCCccccCCChHHHHHH----HHHHHHHHHHHHhcCCCccccccccCCCChH-HHHHHhhhHHHHHHHHHh
Confidence 999999999999999999999888 55667888899999999 889999999999 666667788877777755
No 240
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.52 E-value=8.1e-14 Score=139.22 Aligned_cols=242 Identities=15% Similarity=0.195 Sum_probs=142.1
Q ss_pred hhhcChHHHHHHHHHHH-HHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEE---e
Q 013706 162 SNIVGLHELKIQLRKWA-KGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE---V 237 (438)
Q Consensus 162 ~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~---~ 237 (438)
-.+.|++.+|..+.-.+ .... .....+ .......|+||+|+||||||++||++++.+... .++. .
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~---~~~~~~--~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~------~~~~~~~~ 271 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVH---KNLPDG--MKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA------VYTTGKGS 271 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCc---cccCCC--ccccccceEEEeCCCChhHHHHHHHHHHHcCcc------eEcCCCCC
Confidence 45788888876665331 1100 000001 112234589999999999999999999976321 1111 1
Q ss_pred eccccccc-----ccccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC------------
Q 013706 238 QRTDLVGE-----FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------------ 300 (438)
Q Consensus 238 ~~~~~~~~-----~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------------ 300 (438)
++..+... ..|+- ..-...+..|.+|+++|||++.+.+..| ..|++.|+.+
T Consensus 272 ~~~~l~~~~~~~~~~g~~-~~~~G~l~~A~~Gil~iDEi~~l~~~~q-----------~~L~e~me~~~i~i~k~G~~~~ 339 (509)
T smart00350 272 SAVGLTAAVTRDPETREF-TLEGGALVLADNGVCCIDEFDKMDDSDR-----------TAIHEAMEQQTISIAKAGITTT 339 (509)
T ss_pred CcCCccccceEccCcceE-EecCccEEecCCCEEEEechhhCCHHHH-----------HHHHHHHhcCEEEEEeCCEEEE
Confidence 11112111 11110 0011245567889999999999987544 7888888653
Q ss_pred ---CEEEEEecCChhH--------HHHhhhCcCccCCCCcceeC-CCCCHHHHHHHHHHHHhccccc----ccc------
Q 013706 301 ---KVVVIFAGYSEPM--------KRVIASNEGFCRRVTKFFHF-NDFNSEELAKILHIKMNNQTED----SLL------ 358 (438)
Q Consensus 301 ---~v~vi~~~~~~~~--------~~~~~~~p~l~~R~~~~i~~-~~~~~~e~~~il~~~l~~~~~~----~~~------ 358 (438)
...||+++++..- ..-+...|++++|||..+.+ +.|+.+...+|+++.+...... ...
T Consensus 340 l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~ 419 (509)
T smart00350 340 LNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPIS 419 (509)
T ss_pred ecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCC
Confidence 3467777665321 11123479999999886554 7888888888888865432100 000
Q ss_pred ---------cccc-ccccccHHHHHHHHHHHhhHhh---------hccccccchHHHHHHHHHHhhccccCCCCChhhhh
Q 013706 359 ---------YGFK-LHSSCSMDAIAALIEKETTEKQ---------RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELR 419 (438)
Q Consensus 359 ---------~~~~-~~~~~~~~~~~~~~~~~~~~~~---------~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~ 419 (438)
+--. +.+.+++++...+...|..... ..+...|.+..++.-|...|..+. ..
T Consensus 420 ~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~---------r~ 490 (509)
T smart00350 420 QEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRL---------SD 490 (509)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcC---------CC
Confidence 0001 3456777777777666653221 112345677777776666664443 25
Q ss_pred hccHHHHHHHHHHHHh
Q 013706 420 TITLEDLEAGLKLLLR 435 (438)
Q Consensus 420 ~i~~~d~~~a~~~~~~ 435 (438)
.|+.+|+.+|++.+..
T Consensus 491 ~V~~~Dv~~ai~l~~~ 506 (509)
T smart00350 491 VVEEADVEEAIRLLRE 506 (509)
T ss_pred ccCHHHHHHHHHHHHH
Confidence 7999999999998753
No 241
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.51 E-value=5.3e-14 Score=119.42 Aligned_cols=111 Identities=16% Similarity=0.346 Sum_probs=78.4
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHH-------HHccCcEEEEeC
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRI-------KEAEGGILFVDE 270 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-------~~a~~~il~iDE 270 (438)
+..+++|.||+|||||.+|+++|+.++. -...+++.++.+.+... ++....+.+.+ ..+.++||||||
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~---~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDE 76 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFV---GSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDE 76 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT----SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEET
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhcc---CCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHH
Confidence 4467999999999999999999999873 12348888998877651 11111222222 233457999999
Q ss_pred cccccCCCCCCCchhHHHHHHHHHhhccC-------------CCEEEEEecCChhH
Q 013706 271 AYRLIPMQKADDKDYGIEALEEIMSVMDG-------------GKVVVIFAGYSEPM 313 (438)
Q Consensus 271 id~l~~~~~~~~~~~~~~~~~~ll~~~~~-------------~~v~vi~~~~~~~~ 313 (438)
||++.++.+...+.....+++.||+.||+ +++++|++++-...
T Consensus 77 idKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 77 IDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp GGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTH
T ss_pred HhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccc
Confidence 99999984444455677899999999975 35688888764443
No 242
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.51 E-value=1.1e-12 Score=114.79 Aligned_cols=192 Identities=18% Similarity=0.240 Sum_probs=124.9
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..+++++|.+..++.|.+-.... +...+..|+||+|++|||||+++|++..++...|. .++++.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~F------------l~G~pannvLL~G~rGtGKSSlVkall~~y~~~GL----RlIev~ 87 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQF------------LQGLPANNVLLWGARGTGKSSLVKALLNEYADQGL----RLIEVS 87 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHH------------HcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCc----eEEEEC
Confidence 46889999999999888765443 22347789999999999999999999999987664 678887
Q ss_pred cccccccccccchHHHHHHHHH----ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC------CCEEEEEec
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKE----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKVVVIFAG 308 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~----a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------~~v~vi~~~ 308 (438)
..++.. +..+++. -..-|||+|++. +-. . + .--..|...||+ .+|++.+|+
T Consensus 88 k~~L~~---------l~~l~~~l~~~~~kFIlf~DDLs-Fe~--~--d-----~~yk~LKs~LeGgle~~P~NvliyATS 148 (249)
T PF05673_consen 88 KEDLGD---------LPELLDLLRDRPYKFILFCDDLS-FEE--G--D-----TEYKALKSVLEGGLEARPDNVLIYATS 148 (249)
T ss_pred HHHhcc---------HHHHHHHHhcCCCCEEEEecCCC-CCC--C--c-----HHHHHHHHHhcCccccCCCcEEEEEec
Confidence 766532 2333333 234799999852 211 1 1 222677777776 345665555
Q ss_pred CChhHH-H-Hhhh--------C--------cCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHH
Q 013706 309 YSEPMK-R-VIAS--------N--------EGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMD 370 (438)
Q Consensus 309 ~~~~~~-~-~~~~--------~--------p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~ 370 (438)
|...+- . .... + =+|.+||...|.|.+|+.++-.+|++.++.+. |+.+ +.+
T Consensus 149 NRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~-------g~~~----~~e 217 (249)
T PF05673_consen 149 NRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERY-------GLEL----DEE 217 (249)
T ss_pred chhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHc-------CCCC----CHH
Confidence 433221 1 1110 1 15677999999999999999999999999864 3443 334
Q ss_pred HHHHHHHHHhhHhhhccccccchHHHHH
Q 013706 371 AIAALIEKETTEKQRREMNGGLVDPMLV 398 (438)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~n~~~l~~~~~ 398 (438)
.+...+-.+. .....-+||-.++.++
T Consensus 218 ~l~~~Al~wa--~~rg~RSGRtA~QF~~ 243 (249)
T PF05673_consen 218 ELRQEALQWA--LRRGGRSGRTARQFID 243 (249)
T ss_pred HHHHHHHHHH--HHcCCCCHHHHHHHHH
Confidence 4444443332 1112345666666554
No 243
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.2e-14 Score=135.36 Aligned_cols=118 Identities=26% Similarity=0.428 Sum_probs=80.2
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHH--------------
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLY-------------- 224 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~-------------- 224 (438)
.+|.|++|++..|+.+.-. +....|+||+|||||||||+|+.+...|.
T Consensus 176 ~D~~DV~GQ~~AKrAleiA------------------AAGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~ 237 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIA------------------AAGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIH 237 (490)
T ss_pred cchhhhcCcHHHHHHHHHH------------------HhcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHh
Confidence 4799999999999998854 23567999999999999999999976541
Q ss_pred -HcC-------CcCCCCEEEeecccccccccccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhh
Q 013706 225 -MVG-------ILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV 296 (438)
Q Consensus 225 -~~~-------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ 296 (438)
..+ +....||..-+-+.....++|........-+..|.+|||||||+ .++.+.+++.|.+-
T Consensus 238 s~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDEl-----------pef~~~iLe~LR~P 306 (490)
T COG0606 238 SLAGDLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDEL-----------PEFKRSILEALREP 306 (490)
T ss_pred hhcccccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeecc-----------chhhHHHHHHHhCc
Confidence 001 11222333322222233344443333334457789999999998 45556899999999
Q ss_pred ccCCCEEEE
Q 013706 297 MDGGKVVVI 305 (438)
Q Consensus 297 ~~~~~v~vi 305 (438)
|+++++++-
T Consensus 307 LE~g~i~Is 315 (490)
T COG0606 307 LENGKIIIS 315 (490)
T ss_pred cccCcEEEE
Confidence 998765443
No 244
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.50 E-value=4.1e-14 Score=133.47 Aligned_cols=114 Identities=38% Similarity=0.501 Sum_probs=100.3
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCC-----------------------------------------------------
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGN----------------------------------------------------- 29 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~----------------------------------------------------- 29 (438)
.||||||.|+..||..++++|+++++.
T Consensus 105 e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~ 184 (527)
T KOG0505|consen 105 EGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQW 184 (527)
T ss_pred ccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHH
Confidence 589999999999999999999995333
Q ss_pred --CCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCccc
Q 013706 30 --DKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAK 107 (438)
Q Consensus 30 --~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~ 107 (438)
.|...+..+..|-|.||+|+.+|..++.++|++.|.+++.+|.+||||||.|+ ..|..+++++|+++|++++..
T Consensus 185 l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA----~Wg~~~~~elL~~~ga~~d~~ 260 (527)
T KOG0505|consen 185 LNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAA----HWGQEDACELLVEHGADMDAK 260 (527)
T ss_pred HhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHH----HhhhHhHHHHHHHhhcccchh
Confidence 23344555656999999999999999999999999999999999999999999 457899999999999999999
Q ss_pred CCCCCcccccccc
Q 013706 108 DNEGKTPLDHLSN 120 (438)
Q Consensus 108 d~~g~t~l~~~a~ 120 (438)
+..|.||++.+..
T Consensus 261 t~~g~~p~dv~de 273 (527)
T KOG0505|consen 261 TKMGETPLDVADE 273 (527)
T ss_pred hhcCCCCccchhh
Confidence 9999999955443
No 245
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.49 E-value=2.8e-13 Score=121.65 Aligned_cols=124 Identities=38% Similarity=0.505 Sum_probs=114.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCC-----HHHHHHHHHCCC---CcccccCCC
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGC-----NEAAKLLLAHGA---FIEAKANNG 74 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~-----~~~v~~Ll~~g~---~~~~~~~~g 74 (438)
.+.+++|.++..+...++++++. .+.+++.+|..|.||||+|+..++ .++++.|++.|+ +.+.+|..|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g 147 (235)
T COG0666 72 DGRLPLHSAASKGDDKIVKLLLA----SGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG 147 (235)
T ss_pred cccCHHHHHHHcCcHHHHHHHHH----cCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCC
Confidence 37899999999999999999998 789999999999999999999999 999999999999 666779999
Q ss_pred CcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhcc
Q 013706 75 MTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS 135 (438)
Q Consensus 75 ~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~ 135 (438)
.||||+|+ ..|+.+++..|+..|++++..+..|.|++ +.++..+...+...+...+
T Consensus 148 ~tpl~~A~----~~~~~~~~~~ll~~~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 148 NTPLHWAA----LNGDADIVELLLEAGADPNSRNSYGVTAL-DPAAKNGRIELVKLLLDKG 203 (235)
T ss_pred CchhHHHH----HcCchHHHHHHHhcCCCCcccccCCCcch-hhhcccchHHHHHHHHhcC
Confidence 99999999 78889999999999999999999999999 7777778888888887654
No 246
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.48 E-value=7.8e-14 Score=125.25 Aligned_cols=123 Identities=27% Similarity=0.359 Sum_probs=110.8
Q ss_pred CCCcHHHHHHHc-----CCHHHHHHHhcCCCCCCccccccc-CCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCc
Q 013706 3 MAQTPLHVSAGY-----NKAEIVKSLLEWPGNDKVELEAQN-MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMT 76 (438)
Q Consensus 3 ~g~tpLh~A~~~-----g~~~~v~~Ll~~~~~~~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t 76 (438)
.|+||+++|+.. .+..+|..|+.. .|+|++- ..|+|+||+|+..|+.++|+.|+..|+|+|.+|.+|.|
T Consensus 301 AGYtpiMLaALA~lk~~~d~~vV~~LF~m-----gnVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGST 375 (452)
T KOG0514|consen 301 AGYTPVMLAALAKLKQPADRTVVERLFKM-----GDVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGST 375 (452)
T ss_pred ccccHHHHHHHHhhcchhhHHHHHHHHhc-----cCcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccH
Confidence 699999999964 578999999973 4678775 56999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccCcHHHHHHHHhC-CCCCcccCCCCCccccccccCCCchhHHHHHHhcc
Q 013706 77 PLHLSVWYSIRSEDYATVKTLLEY-NADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS 135 (438)
Q Consensus 77 ~L~~A~~~~~~~~~~~~~~~Ll~~-ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~ 135 (438)
+|++|| .+||.+++.+||.. ++|..+.|.+|-|+| .+|...++.++.-+|..+.
T Consensus 376 ALMCA~----EHGhkEivklLLA~p~cd~sLtD~DgSTAl-~IAleagh~eIa~mlYa~~ 430 (452)
T KOG0514|consen 376 ALMCAA----EHGHKEIVKLLLAVPSCDISLTDVDGSTAL-SIALEAGHREIAVMLYAHM 430 (452)
T ss_pred HHhhhh----hhChHHHHHHHhccCcccceeecCCCchhh-hhHHhcCchHHHHHHHHHH
Confidence 999999 99999999999976 999999999999999 8888888999888776554
No 247
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.48 E-value=1.3e-13 Score=99.27 Aligned_cols=73 Identities=32% Similarity=0.476 Sum_probs=68.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHH
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLH 79 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 79 (438)
.|++|||+|+-+|+++++.+|+. .|++++.+|++|-|||..|++.||.+||++|++.|++-..+..+|.+.+-
T Consensus 33 ggR~plhyAAD~GQl~ilefli~----iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~e 105 (117)
T KOG4214|consen 33 GGRTPLHYAADYGQLSILEFLIS----IGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIE 105 (117)
T ss_pred CCcccchHhhhcchHHHHHHHHH----hccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHh
Confidence 68999999999999999999999 89999999999999999999999999999999999998888888876654
No 248
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.47 E-value=8e-14 Score=135.70 Aligned_cols=175 Identities=18% Similarity=0.239 Sum_probs=129.7
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccc-----ccccccchHHH--------HHHHHHccCc
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV-----GEFVGHTGPKT--------RRRIKEAEGG 264 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~-----~~~~g~~~~~~--------~~~~~~a~~~ 264 (438)
...++++.|.|||||..+||++++... ..++|+.++|..+. +++||..+... +..+++|.+|
T Consensus 335 ~~~pvll~GEtGtGKe~laraiH~~s~-----~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gG 409 (606)
T COG3284 335 TDLPVLLQGETGTGKEVLARAIHQNSE-----AAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGG 409 (606)
T ss_pred cCCCeEecCCcchhHHHHHHHHHhccc-----ccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCC
Confidence 567899999999999999999998443 56799999997643 45676644333 3456778899
Q ss_pred EEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC------------CEEEEEecCChhHHHHhhhCcCcc----CCC-
Q 013706 265 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------------KVVVIFAGYSEPMKRVIASNEGFC----RRV- 327 (438)
Q Consensus 265 il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------------~v~vi~~~~~~~~~~~~~~~p~l~----~R~- 327 (438)
+||+|||..|.- .+...||+.++++ +|.||+||+.+--..+ .+-.++ -|+
T Consensus 410 tlFldeIgd~p~-----------~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv--~~g~fredLyyrL~ 476 (606)
T COG3284 410 TLFLDEIGDMPL-----------ALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLV--EQGRFREDLYYRLN 476 (606)
T ss_pred ccHHHHhhhchH-----------HHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHH--HcCCchHHHHHHhc
Confidence 999999988875 4558999999874 3577777665543322 133333 366
Q ss_pred CcceeCCCCCH-HHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 328 TKFFHFNDFNS-EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 328 ~~~i~~~~~~~-~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
...|++|++.. .++...+.+++.+... ....+++++++.+..+.| |||.|+|+|+++.+.-..
T Consensus 477 ~~~i~lP~lr~R~d~~~~l~~~~~~~~~--------~~~~l~~~~~~~l~~~~W------PGNirel~~v~~~~~~l~ 540 (606)
T COG3284 477 AFVITLPPLRERSDRIPLLDRILKREND--------WRLQLDDDALARLLAYRW------PGNIRELDNVIERLAALS 540 (606)
T ss_pred CeeeccCchhcccccHHHHHHHHHHccC--------CCccCCHHHHHHHHhCCC------CCcHHHHHHHHHHHHHcC
Confidence 66788888764 5667777777776542 235678899999999999 999999999999887654
No 249
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.46 E-value=3e-13 Score=138.45 Aligned_cols=217 Identities=13% Similarity=0.128 Sum_probs=130.2
Q ss_pred CCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc---ccccchHHHHHHHHHccCcEEEEeCccc
Q 013706 197 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE---FVGHTGPKTRRRIKEAEGGILFVDEAYR 273 (438)
Q Consensus 197 ~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~a~~~il~iDEid~ 273 (438)
+...||||.|+||||||.+|+++++...........++..+.+...... ..|+- ..-...+..|.+|+++|||+++
T Consensus 490 RgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~-~le~GaLvlAdgGtL~IDEidk 568 (915)
T PTZ00111 490 RGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRA-MIQPGAVVLANGGVCCIDELDK 568 (915)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcc-cccCCcEEEcCCCeEEecchhh
Confidence 3456999999999999999999999654322223334444443332210 01110 0112345678889999999999
Q ss_pred ccCCCCCCCchhHHHHHHHHHhhccCC---------------CEEEEEecCChh--------HHHHhhhCcCccCCCCcc
Q 013706 274 LIPMQKADDKDYGIEALEEIMSVMDGG---------------KVVVIFAGYSEP--------MKRVIASNEGFCRRVTKF 330 (438)
Q Consensus 274 l~~~~~~~~~~~~~~~~~~ll~~~~~~---------------~v~vi~~~~~~~--------~~~~~~~~p~l~~R~~~~ 330 (438)
+.+..| ..|++.|+.+ ...||+|+++.. +..-+...|+|++|||.+
T Consensus 569 ms~~~Q-----------~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLI 637 (915)
T PTZ00111 569 CHNESR-----------LSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLI 637 (915)
T ss_pred CCHHHH-----------HHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEE
Confidence 987544 7888888653 357888876531 112233468999999877
Q ss_pred ee-CCCCCHHHHHHHHHHHHhccc---------c---------------c---------cc---c-----c-cccccccc
Q 013706 331 FH-FNDFNSEELAKILHIKMNNQT---------E---------------D---------SL---L-----Y-GFKLHSSC 367 (438)
Q Consensus 331 i~-~~~~~~~e~~~il~~~l~~~~---------~---------------~---------~~---~-----~-~~~~~~~~ 367 (438)
+- ++.|+.+.=..|..+.++... . . .. . | +-.+.|.+
T Consensus 638 f~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~P~L 717 (915)
T PTZ00111 638 YLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCFPKL 717 (915)
T ss_pred EEecCCCChHHHHHHHHHHHHhhcccccccccccccchhccccccccccccccccccCCCCHHHHHHHHHHHhccCCCCC
Confidence 55 566666544455444432110 0 0 00 0 0 11346777
Q ss_pred cHHHHHHHHHHHhhHhhh------------------------------ccccccchHHHHHHHHHHhhccccCCCCChhh
Q 013706 368 SMDAIAALIEKETTEKQR------------------------------REMNGGLVDPMLVNARENLDLRLSFDCLDTDE 417 (438)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~------------------------------~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~ 417 (438)
++++-..+...|..-... -+...|.|..++.-+...|..|+.
T Consensus 718 s~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs-------- 789 (915)
T PTZ00111 718 SDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLS-------- 789 (915)
T ss_pred CHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHhhhcCc--------
Confidence 888877776655421110 123457777777766656544444
Q ss_pred hhhccHHHHHHHHHHHH
Q 013706 418 LRTITLEDLEAGLKLLL 434 (438)
Q Consensus 418 ~~~i~~~d~~~a~~~~~ 434 (438)
..|+.+|+.+|++.++
T Consensus 790 -~~Vt~~Dv~~Ai~L~~ 805 (915)
T PTZ00111 790 -TVVTPADALQAVQIVK 805 (915)
T ss_pred -CcccHHHHHHHHHHHH
Confidence 4688999999988875
No 250
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.46 E-value=1.6e-13 Score=131.99 Aligned_cols=151 Identities=16% Similarity=0.199 Sum_probs=95.0
Q ss_pred hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecc-
Q 013706 162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT- 240 (438)
Q Consensus 162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~- 240 (438)
..++|.+++++.+... .....++||+||||||||++|+++|+.+...+ +|....+.
T Consensus 20 ~~i~gre~vI~lll~a------------------alag~hVLL~GpPGTGKT~LAraLa~~~~~~~-----~F~~~~~~f 76 (498)
T PRK13531 20 KGLYERSHAIRLCLLA------------------ALSGESVFLLGPPGIAKSLIARRLKFAFQNAR-----AFEYLMTRF 76 (498)
T ss_pred hhccCcHHHHHHHHHH------------------HccCCCEEEECCCChhHHHHHHHHHHHhcccC-----cceeeeeee
Confidence 3578998888877754 23568999999999999999999999765322 23222221
Q ss_pred cccccccccc-hHHH--HHHHHHc------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCC----------
Q 013706 241 DLVGEFVGHT-GPKT--RRRIKEA------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---------- 301 (438)
Q Consensus 241 ~~~~~~~g~~-~~~~--~~~~~~a------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~---------- 301 (438)
......+|.. -... ...|... ...+||+|||..+.++ +++.||+.|+++.
T Consensus 77 ttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp~-----------~QsaLLeam~Er~~t~g~~~~~l 145 (498)
T PRK13531 77 STPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGPA-----------ILNTLLTAINERRFRNGAHEEKI 145 (498)
T ss_pred cCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeecccccCCHH-----------HHHHHHHHHHhCeEecCCeEEeC
Confidence 1123444532 1111 1223211 1138999999988874 4499999996532
Q ss_pred --EEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCH-HHHHHHHHHH
Q 013706 302 --VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNS-EELAKILHIK 348 (438)
Q Consensus 302 --v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~-~e~~~il~~~ 348 (438)
.++++||+ +...--...+++..||-..+.+|+|+. ++..+|+...
T Consensus 146 p~rfiv~ATN--~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 146 PMRLLVTASN--ELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CCcEEEEECC--CCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 35555553 221100013578999988999999974 5667888764
No 251
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.45 E-value=1.7e-13 Score=103.90 Aligned_cols=86 Identities=40% Similarity=0.562 Sum_probs=77.0
Q ss_pred HHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCc
Q 013706 45 LHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124 (438)
Q Consensus 45 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~ 124 (438)
||+|++.|+.+++++|++.+.+++. |.||||+|+ ..|+.+++++|+++|++++..|.+|+||| +.|+..++
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~ 71 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAA----ENGNLEIVKLLLENGADINSQDKNGNTAL-HYAAENGN 71 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHH----HTTTHHHHHHHHHTTTCTT-BSTTSSBHH-HHHHHTTH
T ss_pred CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHH----HcCCHHHHHHHHHhcccccccCCCCCCHH-HHHHHcCC
Confidence 7999999999999999999988877 889999999 88999999999999999999999999999 55666889
Q ss_pred hhHHHHHHhccchHH
Q 013706 125 AKLRELLLWHSEEQR 139 (438)
Q Consensus 125 ~~~~~lL~~~~~~~~ 139 (438)
.+++++|+..+.+..
T Consensus 72 ~~~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 72 LEIVKLLLEHGADVN 86 (89)
T ss_dssp HHHHHHHHHTTT-TT
T ss_pred HHHHHHHHHcCCCCC
Confidence 999999998876643
No 252
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.45 E-value=2e-13 Score=92.64 Aligned_cols=54 Identities=50% Similarity=0.667 Sum_probs=38.4
Q ss_pred CCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHH
Q 013706 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL 61 (438)
Q Consensus 4 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll 61 (438)
|.||||+||..|+.+++++|++ .+.++|.+|.+|+||||+|+..|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~----~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLE----HGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHH----TTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 6788888888888888888887 57778888888888888888888888888775
No 253
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.45 E-value=8.4e-14 Score=94.98 Aligned_cols=51 Identities=47% Similarity=0.751 Sum_probs=33.3
Q ss_pred CcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 31 KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 31 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
..+++.+|..|.||||+||..|+.+++++|++.|++++.+|..|+||||+|
T Consensus 6 ~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 6 PADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred cCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 388999999999999999999999999999999999999999999999987
No 254
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.45 E-value=5.9e-13 Score=130.49 Aligned_cols=151 Identities=21% Similarity=0.274 Sum_probs=100.1
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHc-------------
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV------------- 226 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~------------- 226 (438)
.+.++.|+..+++.+.- ......+++|+||||+|||++++.++..+...
T Consensus 189 d~~~v~Gq~~~~~al~l------------------aa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s 250 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEI------------------TAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILS 250 (506)
T ss_pred CeEEEECcHHHHhhhhe------------------eccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhh
Confidence 67788888776665432 13356789999999999999999998754210
Q ss_pred --CC------cCCCCEEEeecccccccccccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhcc
Q 013706 227 --GI------LPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD 298 (438)
Q Consensus 227 --~~------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~ 298 (438)
|. ....||...+.+.-....+|.........+..|.+|||||||++.+.+ .++..|++.|+
T Consensus 251 ~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~-----------~~~~~L~~~LE 319 (506)
T PRK09862 251 LVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFER-----------RTLDALREPIE 319 (506)
T ss_pred hhccccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCCH-----------HHHHHHHHHHH
Confidence 00 012233322222222234554333445678999999999999988765 55688888886
Q ss_pred CCC---------------EEEEEecCChhHHH----------------HhhhCcCccCCCCcceeCCCCCHH
Q 013706 299 GGK---------------VVVIFAGYSEPMKR----------------VIASNEGFCRRVTKFFHFNDFNSE 339 (438)
Q Consensus 299 ~~~---------------v~vi~~~~~~~~~~----------------~~~~~p~l~~R~~~~i~~~~~~~~ 339 (438)
++. +.+|+++++.+-.. .-...+++++|||..+.+++++.+
T Consensus 320 ~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 320 SGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred cCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 543 57888877664110 112356899999999999998765
No 255
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.44 E-value=2.4e-12 Score=121.86 Aligned_cols=158 Identities=18% Similarity=0.217 Sum_probs=100.2
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCC-----c-CC
Q 013706 158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI-----L-PT 231 (438)
Q Consensus 158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~-----~-~~ 231 (438)
...+++++|++.+++.+...+.. ...+..+||+||+|+|||++|+.+|+.+..... . ..
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~---------------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~ 83 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYRE---------------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA 83 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHc---------------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC
Confidence 35788999999999999886431 123345899999999999999999998864110 0 00
Q ss_pred CCEEEeec---------cccc--cc----ccc--c---chHHHHHH---HHHc----cCcEEEEeCcccccCCCCCCCch
Q 013706 232 DRVTEVQR---------TDLV--GE----FVG--H---TGPKTRRR---IKEA----EGGILFVDEAYRLIPMQKADDKD 284 (438)
Q Consensus 232 ~~~~~~~~---------~~~~--~~----~~g--~---~~~~~~~~---~~~a----~~~il~iDEid~l~~~~~~~~~~ 284 (438)
.+.-.+.. .++. .. --| . +-..++.+ |... ...|++|||+|.|..
T Consensus 84 ~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~-------- 155 (351)
T PRK09112 84 DPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR-------- 155 (351)
T ss_pred CCCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH--------
Confidence 01000000 0110 00 000 0 11223332 2221 236999999999976
Q ss_pred hHHHHHHHHHhhccC--C-CEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHH
Q 013706 285 YGIEALEEIMSVMDG--G-KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIK 348 (438)
Q Consensus 285 ~~~~~~~~ll~~~~~--~-~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~ 348 (438)
...|.||..+++ . .+++++++.+. .+ .|.+++|+ ..+.|++|+.++..+++...
T Consensus 156 ---~aanaLLk~LEEpp~~~~fiLit~~~~---~l---lptIrSRc-~~i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 156 ---NAANAILKTLEEPPARALFILISHSSG---RL---LPTIRSRC-QPISLKPLDDDELKKALSHL 212 (351)
T ss_pred ---HHHHHHHHHHhcCCCCceEEEEECChh---hc---cHHHHhhc-cEEEecCCCHHHHHHHHHHh
Confidence 344889999987 3 34444443333 22 68899998 89999999999999999873
No 256
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.43 E-value=3.4e-13 Score=124.07 Aligned_cols=136 Identities=15% Similarity=0.088 Sum_probs=93.0
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc--ccccchHH----------HHHHHHH--ccCc
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE--FVGHTGPK----------TRRRIKE--AEGG 264 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~----------~~~~~~~--a~~~ 264 (438)
..+++|.||||||||++|+.+|+.++. +++.+++...+.. ++|..... ....+.. ..++
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~-------~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~ 136 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNW-------PCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNV 136 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCC-------CeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCe
Confidence 468999999999999999999999987 7777776543332 45542111 1112322 2567
Q ss_pred EEEEeCcccccCCCCCCCchhHHHHHHHHHhh-----ccC--------CCEEEEEecCChh-------HHHHhhhCcCcc
Q 013706 265 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSV-----MDG--------GKVVVIFAGYSEP-------MKRVIASNEGFC 324 (438)
Q Consensus 265 il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~-----~~~--------~~v~vi~~~~~~~-------~~~~~~~~p~l~ 324 (438)
+|++||+|...++.+ .+++.+|+. +.+ ..+.||++.|+.. +.-....+++++
T Consensus 137 illlDEin~a~p~~~--------~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~l 208 (327)
T TIGR01650 137 ALCFDEYDAGRPDVM--------FVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQM 208 (327)
T ss_pred EEEechhhccCHHHH--------HHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHH
Confidence 899999999876433 334444442 111 2357788777644 333334478999
Q ss_pred CCCCcceeCCCCCHHHHHHHHHHHH
Q 013706 325 RRVTKFFHFNDFNSEELAKILHIKM 349 (438)
Q Consensus 325 ~R~~~~i~~~~~~~~e~~~il~~~l 349 (438)
+||-.++.++.|+.++-.+|+....
T Consensus 209 DRF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 209 DRWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred hheeeEeeCCCCCHHHHHHHHHhhc
Confidence 9998788999999999999998654
No 257
>PHA02792 ankyrin-like protein; Provisional
Probab=99.42 E-value=3.3e-13 Score=133.81 Aligned_cols=124 Identities=15% Similarity=0.063 Sum_probs=105.1
Q ss_pred CCCcHHHHHH-HcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHH-cCCHHHHHHHHHCCCCcc------------
Q 013706 3 MAQTPLHVSA-GYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK-NGCNEAAKLLLAHGAFIE------------ 68 (438)
Q Consensus 3 ~g~tpLh~A~-~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~-~g~~~~v~~Ll~~g~~~~------------ 68 (438)
+|.+|+|+-| ..|++++|++|+. +|+++|.+++.|.||+|+|+. .++.+++++|+++||++.
T Consensus 70 ~~~~~~~~~~s~n~~lElvk~LI~----~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~ 145 (631)
T PHA02792 70 NDFDIFEYLCSDNIDIELLKLLIS----KGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIE 145 (631)
T ss_pred CCccHHHHHHHhcccHHHHHHHHH----cCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhh
Confidence 5778887655 5689999999999 799999999999999999976 699999999999998732
Q ss_pred ------------------------cccCCCCcHHHHHhhcccccC-------cHHHHHHHHhCCCCCcccCCCCCccccc
Q 013706 69 ------------------------AKANNGMTPLHLSVWYSIRSE-------DYATVKTLLEYNADCSAKDNEGKTPLDH 117 (438)
Q Consensus 69 ------------------------~~~~~g~t~L~~A~~~~~~~~-------~~~~~~~Ll~~ga~~~~~d~~g~t~l~~ 117 (438)
..|..|.||||+|+ .++ +.++++.|+.+|++++..|..|.||||+
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i----~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~ 221 (631)
T PHA02792 146 QITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYI----ITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYY 221 (631)
T ss_pred hcccccccchhhhccccccccccccCCCCCCchHHHHH----hhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHH
Confidence 34557999999999 566 7999999999999999999999999966
Q ss_pred cccCCC-chhHHHHHHhc
Q 013706 118 LSNGPG-SAKLRELLLWH 134 (438)
Q Consensus 118 ~a~~~~-~~~~~~lL~~~ 134 (438)
++.... ..+++++|...
T Consensus 222 ~~~~~~i~~ei~~~L~~~ 239 (631)
T PHA02792 222 YVDKCDIKREIFDALFDS 239 (631)
T ss_pred HHHcccchHHHHHHHHhc
Confidence 555331 67788888764
No 258
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.42 E-value=3.6e-12 Score=117.90 Aligned_cols=204 Identities=18% Similarity=0.190 Sum_probs=124.6
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEE--eeccccc---ccccccc-----hH----HHHHHH----HH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE--VQRTDLV---GEFVGHT-----GP----KTRRRI----KE 260 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~--~~~~~~~---~~~~g~~-----~~----~~~~~~----~~ 260 (438)
+..++|+||||+|||++++.+++.+....+. ....+. .+..++. ...+|.. .. .+...+ ..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~-~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~ 121 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVV-AAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAA 121 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeE-EeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 3458899999999999999999877521110 000000 1111111 1112221 11 122212 12
Q ss_pred ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-C-CEEEEEecCChhHHHHhh-hCcCccCCCCcceeCCCCC
Q 013706 261 AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-G-KVVVIFAGYSEPMKRVIA-SNEGFCRRVTKFFHFNDFN 337 (438)
Q Consensus 261 a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~-~v~vi~~~~~~~~~~~~~-~~p~l~~R~~~~i~~~~~~ 337 (438)
.+..+|+|||++.+.+. ..+.+..|.....+ . .+.|++++.+.....+.. ....+.+|+...+++++++
T Consensus 122 ~~~~vliiDe~~~l~~~--------~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~ 193 (269)
T TIGR03015 122 GKRALLVVDEAQNLTPE--------LLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLD 193 (269)
T ss_pred CCCeEEEEECcccCCHH--------HHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCC
Confidence 24579999999988642 12333444333322 2 345566665544333311 1134677888899999999
Q ss_pred HHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhh
Q 013706 338 SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDE 417 (438)
Q Consensus 338 ~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~ 417 (438)
.+|..+++...+.... ..-...++++++..+.+.. .|+.+.+..++..+...+..+ +
T Consensus 194 ~~e~~~~l~~~l~~~g-------~~~~~~~~~~~~~~i~~~s-------~G~p~~i~~l~~~~~~~a~~~---------~ 250 (269)
T TIGR03015 194 REETREYIEHRLERAG-------NRDAPVFSEGAFDAIHRFS-------RGIPRLINILCDRLLLSAFLE---------E 250 (269)
T ss_pred HHHHHHHHHHHHHHcC-------CCCCCCcCHHHHHHHHHHc-------CCcccHHHHHHHHHHHHHHHc---------C
Confidence 9999999998887532 2222347788888888765 688899999999988876332 3
Q ss_pred hhhccHHHHHHHHHHHH
Q 013706 418 LRTITLEDLEAGLKLLL 434 (438)
Q Consensus 418 ~~~i~~~d~~~a~~~~~ 434 (438)
...|+.+++..++..++
T Consensus 251 ~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 251 KREIGGEEVREVIAEID 267 (269)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 35799999999998875
No 259
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.41 E-value=2e-12 Score=130.40 Aligned_cols=128 Identities=16% Similarity=0.233 Sum_probs=80.3
Q ss_pred HHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-----------------------CEEEEEecCChhH
Q 013706 257 RIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----------------------KVVVIFAGYSEPM 313 (438)
Q Consensus 257 ~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-----------------------~v~vi~~~~~~~~ 313 (438)
.|.+|.+|+|||||++.|.+.. ...|++.|+++ ++.+|++++++..
T Consensus 221 ~L~kAnGGtL~LDei~~L~~~~-----------q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll 289 (637)
T PRK13765 221 AIHKAHKGVLFIDEINTLDLES-----------QQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDAL 289 (637)
T ss_pred ceeECCCcEEEEeChHhCCHHH-----------HHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHH
Confidence 4567788999999999996533 36777777432 3578888888655
Q ss_pred HHHhhhCcCccCCCC---cceeCCCC---CHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhc-
Q 013706 314 KRVIASNEGFCRRVT---KFFHFNDF---NSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR- 386 (438)
Q Consensus 314 ~~~~~~~p~l~~R~~---~~i~~~~~---~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 386 (438)
..+ +|+|+.||. ..+.|+.- +.+.+..+++ ++.+... .....+.++.+++..++++++.....+
T Consensus 290 ~~~---dpdL~~rfk~~~v~v~f~~~~~d~~e~~~~~~~-~iaqe~~-----~~G~l~~f~~eAVa~LI~~~~R~ag~r~ 360 (637)
T PRK13765 290 ENM---HPALRSRIKGYGYEVYMRDTMEDTPENRRKLVR-FVAQEVK-----RDGKIPHFDRDAVEEIIREAKRRAGRKG 360 (637)
T ss_pred Hhh---hHHHHHHhccCeEEEEcccccCCCHHHHHHHHH-HHHHHhh-----hccCCCCCCHHHHHHHHHHHHHHhCCcc
Confidence 554 899999985 55666542 2445555554 3333211 001224689999999999887432211
Q ss_pred --cccccchHHHHHHHHHHh
Q 013706 387 --EMNGGLVDPMLVNARENL 404 (438)
Q Consensus 387 --~~n~~~l~~~~~~a~~~~ 404 (438)
....+++.+++..|...+
T Consensus 361 ~lsl~~~~l~~l~r~a~~~a 380 (637)
T PRK13765 361 HLTLKLRDLGGLVRVAGDIA 380 (637)
T ss_pred ccccCHHHHHHHHHHHHHHH
Confidence 123466777777665444
No 260
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.41 E-value=5e-13 Score=125.23 Aligned_cols=118 Identities=25% Similarity=0.295 Sum_probs=99.2
Q ss_pred HHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhccc
Q 013706 7 PLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSI 86 (438)
Q Consensus 7 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 86 (438)
-|.-|+..|.+++|+.++. .-.|+...+..|-|+||.|+..||.++|++|++.|+++|+.|.+||||||+|+
T Consensus 553 LLLDaaLeGEldlVq~~i~----ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAA---- 624 (752)
T KOG0515|consen 553 LLLDAALEGELDLVQRIIY----EVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAA---- 624 (752)
T ss_pred HHHhhhhcchHHHHHHHHH----hhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhh----
Confidence 3566889999999999987 45567788899999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHhCCCCCcccC-CCCCccccccc-cCCCchhHHHHHH
Q 013706 87 RSEDYATVKTLLEYNADCSAKD-NEGKTPLDHLS-NGPGSAKLRELLL 132 (438)
Q Consensus 87 ~~~~~~~~~~Ll~~ga~~~~~d-~~g~t~l~~~a-~~~~~~~~~~lL~ 132 (438)
.-++..+|+.|++.|+-+.... .++.||.+-+- ...|+..|.++|.
T Consensus 625 SCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~ 672 (752)
T KOG0515|consen 625 SCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY 672 (752)
T ss_pred hcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence 7789999999999998876543 57788873321 3345677777775
No 261
>PHA02244 ATPase-like protein
Probab=99.41 E-value=3.9e-12 Score=118.30 Aligned_cols=124 Identities=20% Similarity=0.173 Sum_probs=78.4
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccc---cchHHH-HHHHH-HccCcEEEEeCcc
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG---HTGPKT-RRRIK-EAEGGILFVDEAY 272 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~-~~~~~-~a~~~il~iDEid 272 (438)
...+++|+||||||||++|+++|..++. +++.++...-.....| ....-. ..++. .+.+++|||||++
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~lg~-------pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId 190 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEALDL-------DFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEID 190 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhCC-------CEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcC
Confidence 4568999999999999999999998765 6766653211111122 111100 11122 3578999999999
Q ss_pred cccCCCCCCCchhHHHHHHHHHhhccC-------------CCEEEEEecCChh--HHHH----hhhCcCccCCCCcceeC
Q 013706 273 RLIPMQKADDKDYGIEALEEIMSVMDG-------------GKVVVIFAGYSEP--MKRV----IASNEGFCRRVTKFFHF 333 (438)
Q Consensus 273 ~l~~~~~~~~~~~~~~~~~~ll~~~~~-------------~~v~vi~~~~~~~--~~~~----~~~~p~l~~R~~~~i~~ 333 (438)
.+.+..+ ..|...+++ .++.+|+++++.. +..+ -..++++++|| ..|+|
T Consensus 191 ~a~p~vq-----------~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~ 258 (383)
T PHA02244 191 ASIPEAL-----------IIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEF 258 (383)
T ss_pred cCCHHHH-----------HHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeC
Confidence 9886433 445555542 3568888777631 1111 12378999999 67999
Q ss_pred CCCCHHH
Q 013706 334 NDFNSEE 340 (438)
Q Consensus 334 ~~~~~~e 340 (438)
+.|+..|
T Consensus 259 dyp~~~E 265 (383)
T PHA02244 259 DYDEKIE 265 (383)
T ss_pred CCCcHHH
Confidence 9988433
No 262
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.40 E-value=5.3e-13 Score=140.74 Aligned_cols=78 Identities=36% Similarity=0.365 Sum_probs=65.4
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHCCCCccccc--------------CCCCcHHHHHhhcccccCcHHHHHHHHhCCCCC
Q 013706 39 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA--------------NNGMTPLHLSVWYSIRSEDYATVKTLLEYNADC 104 (438)
Q Consensus 39 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--------------~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~ 104 (438)
..|.||||+|+.+|+.+++++|+++|++++.++ ..|.||||+|+ ..++.+++++|++.|+++
T Consensus 126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa----~~~~~~iv~lLl~~gadi 201 (743)
T TIGR00870 126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAA----CLGSPSIVALLSEDPADI 201 (743)
T ss_pred CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHH----HhCCHHHHHHHhcCCcch
Confidence 458899999999999999999999999988653 25889999988 778899999999999999
Q ss_pred cccCCCCCcccccccc
Q 013706 105 SAKDNEGKTPLDHLSN 120 (438)
Q Consensus 105 ~~~d~~g~t~l~~~a~ 120 (438)
+..|..|+||+|.++.
T Consensus 202 n~~d~~g~T~Lh~A~~ 217 (743)
T TIGR00870 202 LTADSLGNTLLHLLVM 217 (743)
T ss_pred hhHhhhhhHHHHHHHh
Confidence 9999999999944444
No 263
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.7e-12 Score=130.29 Aligned_cols=208 Identities=25% Similarity=0.314 Sum_probs=156.7
Q ss_pred CCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHcc---CcEEEEeC
Q 013706 194 VGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDE 270 (438)
Q Consensus 194 ~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDE 270 (438)
....++.+++++||||||||+++++++.. . . .+..+++....+++.|+++...+..|+.+. ++++|+||
T Consensus 13 ~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~d~ 84 (494)
T COG0464 13 LGIEPPKGVLLHGPPGTGKTLLARALANE-G------A-EFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFIDE 84 (494)
T ss_pred hCCCCCCCceeeCCCCCchhHHHHHHHhc-c------C-cccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEeech
Confidence 34568899999999999999999999986 1 1 337788889999999999999999998874 38999999
Q ss_pred cccccCCCCCCCchhHHHHHHHHHhhccCC---CEEEEEecCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHH
Q 013706 271 AYRLIPMQKADDKDYGIEALEEIMSVMDGG---KVVVIFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKIL 345 (438)
Q Consensus 271 id~l~~~~~~~~~~~~~~~~~~ll~~~~~~---~v~vi~~~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il 345 (438)
+|.+.+.++.........++.+++..+++. .+.++..++.... + +|++++ ||+..+.++.++...+.+|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~~--~---~~a~~~~~~~~~~~~~~~~~~~~~~ei~ 159 (494)
T COG0464 85 IDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPDG--L---DPAKRRPGRFDREIEVNLPDEAGRLEIL 159 (494)
T ss_pred hhhcccCccccccchhhHHHHHHHHhcccccCCceEEEeecCCccc--c---ChhHhCccccceeeecCCCCHHHHHHHH
Confidence 999999988756667788999999999863 3666655433332 2 676666 99999999999999888888
Q ss_pred HHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHH
Q 013706 346 HIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLED 425 (438)
Q Consensus 346 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d 425 (438)
........ .....+.+.+.....++. ++++..++..+...+..|.. ....+...++.+|
T Consensus 160 ~~~~~~~~---------~~~~~~~~~~a~~~~~~~---------~~~~~~l~~~~~~~~~~r~~---~~~~~~~~~~~~~ 218 (494)
T COG0464 160 QIHTRLMF---------LGPPGTGKTLAARTVGKS---------GADLGALAKEAALRELRRAI---DLVGEYIGVTEDD 218 (494)
T ss_pred HHHHhcCC---------CcccccHHHHHHhcCCcc---------HHHHHHHHHHHHHHHHHhhh---ccCcccccccHHH
Confidence 87765532 222344455555554443 67777888777777766642 1123456788999
Q ss_pred HHHHHHHHHh
Q 013706 426 LEAGLKLLLR 435 (438)
Q Consensus 426 ~~~a~~~~~~ 435 (438)
+.++++.+.|
T Consensus 219 ~~~~l~~~~~ 228 (494)
T COG0464 219 FEEALKKVLP 228 (494)
T ss_pred HHHHHHhcCc
Confidence 9999998766
No 264
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.40 E-value=6e-13 Score=134.61 Aligned_cols=204 Identities=18% Similarity=0.161 Sum_probs=126.5
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccch--HHH--------HHHHHHccCcEEEE
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG--PKT--------RRRIKEAEGGILFV 268 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~--------~~~~~~a~~~il~i 268 (438)
-.|+||.|+||||||++|+++++.+.. ..+|+.+.........+|... ..+ ...+.+|.+|||||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~-----~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~l 90 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPP-----IMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYV 90 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCc-----CCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEec
Confidence 568999999999999999999997643 126777765433344455421 000 12455678899999
Q ss_pred eCcccccCCCCCCCchhHHHHHHHHHhhccCCC---------------EEEEEecCChhHHHHhhhCcCccCCCCcceeC
Q 013706 269 DEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHF 333 (438)
Q Consensus 269 DEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~---------------v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~ 333 (438)
||++.+.+. +++.|++.|+++. +.||++.++..... ...++|.+||+.++.+
T Consensus 91 DEi~rl~~~-----------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g--~L~~~LldRf~l~v~~ 157 (589)
T TIGR02031 91 DMANLLDDG-----------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGG--GLPDHLLDRLALHVSL 157 (589)
T ss_pred cchhhCCHH-----------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccC--CCCHHHHHhccCeeec
Confidence 999999874 4489999997643 56776655543111 2267899999988877
Q ss_pred CCC-CHHHHHHHHHHHHhccccc-----------cc-cccccccccccHHHHHHHHHHHhhHhhhccccc---cchHHHH
Q 013706 334 NDF-NSEELAKILHIKMNNQTED-----------SL-LYGFKLHSSCSMDAIAALIEKETTEKQRREMNG---GLVDPML 397 (438)
Q Consensus 334 ~~~-~~~e~~~il~~~l~~~~~~-----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~---~~l~~~~ 397 (438)
..+ +.+++.+|+++++...... +. ....--...++++.+..++..+. ..+. |.-..++
T Consensus 158 ~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~------~~gv~s~Ra~i~~~ 231 (589)
T TIGR02031 158 EDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAA------SLGISGHRADLFAV 231 (589)
T ss_pred CCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHH------HcCCCCccHHHHHH
Confidence 654 5677899998866321100 00 00111123456666666666554 2222 3333333
Q ss_pred HHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706 398 VNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 398 ~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 435 (438)
.-|.-.|+. .+...|+.+|+..|+..+.+
T Consensus 232 r~ArA~Aal---------~gr~~V~~~Dv~~a~~lvl~ 260 (589)
T TIGR02031 232 RAAKAHAAL---------HGRTEVTEEDLKLAVELVLL 260 (589)
T ss_pred HHHHHHHHH---------hCCCCCCHHHHHHHHHHHhh
Confidence 333333322 24568999999999887754
No 265
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.39 E-value=5.1e-12 Score=120.25 Aligned_cols=159 Identities=16% Similarity=0.183 Sum_probs=101.8
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC------
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------ 232 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~------ 232 (438)
..+++|+|++.+++.+.+.+.. .+-+..+||+||+|+||+++|.++|+.+.........
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~---------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~ 80 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRS---------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP 80 (365)
T ss_pred CchhhccChHHHHHHHHHHHHc---------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 4688999999999999876431 1233448999999999999999999998643211100
Q ss_pred ---------------------CEEEeecc--cccccccc-cchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCC
Q 013706 233 ---------------------RVTEVQRT--DLVGEFVG-HTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKAD 281 (438)
Q Consensus 233 ---------------------~~~~~~~~--~~~~~~~g-~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~ 281 (438)
.++.+.+. +-.++.-. -.-..++.+.+.. ...|++|||+|.+..
T Consensus 81 ~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~----- 155 (365)
T PRK07471 81 TSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA----- 155 (365)
T ss_pred ccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH-----
Confidence 11111110 00000000 0112344444332 236999999999976
Q ss_pred CchhHHHHHHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHH
Q 013706 282 DKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKM 349 (438)
Q Consensus 282 ~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l 349 (438)
...|.||..+++ +..++|++++... .+ .|.+++|+ ..+.|++|+.++..+++....
T Consensus 156 ------~aanaLLK~LEepp~~~~~IL~t~~~~--~l---lpti~SRc-~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 156 ------NAANALLKVLEEPPARSLFLLVSHAPA--RL---LPTIRSRC-RKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred ------HHHHHHHHHHhcCCCCeEEEEEECCch--hc---hHHhhccc-eEEECCCCCHHHHHHHHHHhc
Confidence 445899999987 3444444433322 12 57788897 899999999999999988754
No 266
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.39 E-value=2.5e-12 Score=114.21 Aligned_cols=177 Identities=14% Similarity=0.162 Sum_probs=109.4
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccch-HHHHHHHHHc-cCcEEEEeCcccccC
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG-PKTRRRIKEA-EGGILFVDEAYRLIP 276 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~a-~~~il~iDEid~l~~ 276 (438)
...+.||||+|+|||.|..++++++.... ....++.+++.++...+..... ..+....+.- ..-+|+||+++.+..
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~--~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQH--PGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAG 111 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHC--TTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhcc--ccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcC
Confidence 34589999999999999999999875422 1235677777776554332111 1222333333 347999999999875
Q ss_pred CCCCCCchhHHHHHHHHHhhccCCCEEEEEecCC-hhHHHHhhhCcCccCCC--CcceeCCCCCHHHHHHHHHHHHhccc
Q 013706 277 MQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS-EPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQT 353 (438)
Q Consensus 277 ~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~-~~~~~~~~~~p~l~~R~--~~~i~~~~~~~~e~~~il~~~l~~~~ 353 (438)
+. .........+-...+.++.+|+.+... ..+.. ..|.|.+|| ...+.+.+|+.+++.+|+++......
T Consensus 112 ~~-----~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~---~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~ 183 (219)
T PF00308_consen 112 KQ-----RTQEELFHLFNRLIESGKQLILTSDRPPSELSG---LLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERG 183 (219)
T ss_dssp HH-----HHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTT---S-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT
T ss_pred ch-----HHHHHHHHHHHHHHhhCCeEEEEeCCCCccccc---cChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhC
Confidence 31 111222233333334566555555433 22222 278889999 67999999999999999999988753
Q ss_pred cccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706 354 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 403 (438)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~ 403 (438)
..++++++..+++.. ..+.|.|..++++..-.
T Consensus 184 -----------~~l~~~v~~~l~~~~-------~~~~r~L~~~l~~l~~~ 215 (219)
T PF00308_consen 184 -----------IELPEEVIEYLARRF-------RRDVRELEGALNRLDAY 215 (219)
T ss_dssp -------------S-HHHHHHHHHHT-------TSSHHHHHHHHHHHHHH
T ss_pred -----------CCCcHHHHHHHHHhh-------cCCHHHHHHHHHHHHHH
Confidence 336778888888875 57788888887765543
No 267
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.39 E-value=6.2e-12 Score=110.00 Aligned_cols=185 Identities=19% Similarity=0.260 Sum_probs=120.6
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCc---------
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL--------- 229 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~--------- 229 (438)
..++.+.+.++....++... ....-+|++||||+|+||-|.+.++-++++..|+-
T Consensus 10 ksl~~l~~~~e~~~~Lksl~----------------~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~ 73 (351)
T KOG2035|consen 10 KSLDELIYHEELANLLKSLS----------------STGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTF 73 (351)
T ss_pred chhhhcccHHHHHHHHHHhc----------------ccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEE
Confidence 35666777777777777651 12345899999999999999999999998654431
Q ss_pred -------------CCCCEEEeecccccccccccchH-HHHHHHHHc-----------c-CcEEEEeCcccccCCCCCCCc
Q 013706 230 -------------PTDRVTEVQRTDLVGEFVGHTGP-KTRRRIKEA-----------E-GGILFVDEAYRLIPMQKADDK 283 (438)
Q Consensus 230 -------------~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~a-----------~-~~il~iDEid~l~~~~~~~~~ 283 (438)
.+...+++++++ .|.-.. -+.+++++. + -.+++|-|+|.|..+.|
T Consensus 74 ~tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ---- 144 (351)
T KOG2035|consen 74 TTPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQ---- 144 (351)
T ss_pred ecCCCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHH----
Confidence 111233333333 232221 233333321 1 17999999999987555
Q ss_pred hhHHHHHHHHHhhccC---CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhcccccccccc
Q 013706 284 DYGIEALEEIMSVMDG---GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYG 360 (438)
Q Consensus 284 ~~~~~~~~~ll~~~~~---~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~ 360 (438)
.+|-+-|+. ..-+++.++...++ -|++++|+ ..|++|.|+.+|+..++...++++.
T Consensus 145 -------~aLRRTMEkYs~~~RlIl~cns~Sri------IepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~------- 203 (351)
T KOG2035|consen 145 -------HALRRTMEKYSSNCRLILVCNSTSRI------IEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEG------- 203 (351)
T ss_pred -------HHHHHHHHHHhcCceEEEEecCcccc------hhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhc-------
Confidence 566666654 44455556555554 57789998 8999999999999999999998863
Q ss_pred ccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHH
Q 013706 361 FKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNA 400 (438)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a 400 (438)
+. +..+.+..+++.. .+|.|-..-++|.+
T Consensus 204 l~----lp~~~l~rIa~kS-------~~nLRrAllmlE~~ 232 (351)
T KOG2035|consen 204 LQ----LPKELLKRIAEKS-------NRNLRRALLMLEAV 232 (351)
T ss_pred cc----CcHHHHHHHHHHh-------cccHHHHHHHHHHH
Confidence 33 3446666666655 45554444444433
No 268
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.39 E-value=1.3e-12 Score=113.91 Aligned_cols=123 Identities=21% Similarity=0.213 Sum_probs=109.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCccc-ccCCCCcHHHHH
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEA-KANNGMTPLHLS 81 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A 81 (438)
....||..+...|..+-...||+ .--++|..|..|.|+|..|+..|+.+.+++|++.|+|+|. ++..+.||||+|
T Consensus 11 ~~~~~Lle~i~Kndt~~a~~LLs----~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFA 86 (396)
T KOG1710|consen 11 APKSPLLEAIDKNDTEAALALLS----TVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFA 86 (396)
T ss_pred chhhHHHHHHccCcHHHHHHHHH----HhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHH
Confidence 35679999999999999999998 4556999999999999999999999999999999999997 578899999999
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhc
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~ 134 (438)
+ ..|+.+++++|++.|+.+..+|.-|+|+-.++|..+ +.+++..+..+
T Consensus 87 A----LSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG-~H~CV~iINN~ 134 (396)
T KOG1710|consen 87 A----LSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVG-HHECVAIINNH 134 (396)
T ss_pred H----HcCCchHHHHHHhccCccccccchhhhHHHHHHHhc-chHHHHHHhcc
Confidence 9 899999999999999999999999999997777765 55677766544
No 269
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.38 E-value=8.3e-12 Score=114.90 Aligned_cols=94 Identities=20% Similarity=0.260 Sum_probs=58.1
Q ss_pred CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-CCEEEEEecCChh-----HHH--HhhhCcCccCCCCcceeCC
Q 013706 263 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEP-----MKR--VIASNEGFCRRVTKFFHFN 334 (438)
Q Consensus 263 ~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~v~vi~~~~~~~-----~~~--~~~~~p~l~~R~~~~i~~~ 334 (438)
+|||||||+|.|-- +..+.|-+.|+. -.-++|+|||+-. .+. ..-.+..|++|+ .+|...
T Consensus 279 pGVLFIDEvHmLDi-----------EcFsfLnralEs~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRl-lII~t~ 346 (398)
T PF06068_consen 279 PGVLFIDEVHMLDI-----------ECFSFLNRALESELSPIIILATNRGITKIRGTDIISPHGIPLDLLDRL-LIIRTK 346 (398)
T ss_dssp E-EEEEESGGGSBH-----------HHHHHHHHHHTSTT--EEEEEES-SEEE-BTTS-EEETT--HHHHTTE-EEEEE-
T ss_pred cceEEecchhhccH-----------HHHHHHHHHhcCCCCcEEEEecCceeeeccCccCcCCCCCCcchHhhc-EEEECC
Confidence 39999999999864 667888888887 2344555543111 110 000124688898 899999
Q ss_pred CCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHH
Q 013706 335 DFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKE 379 (438)
Q Consensus 335 ~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (438)
+|+.+|..+|++..++.+. ..++++++..+..-.
T Consensus 347 py~~~ei~~Il~iR~~~E~-----------v~i~~~al~~L~~ig 380 (398)
T PF06068_consen 347 PYSEEEIKQILKIRAKEED-----------VEISEDALDLLTKIG 380 (398)
T ss_dssp ---HHHHHHHHHHHHHHCT-------------B-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhhhhhc-----------CcCCHHHHHHHHHHh
Confidence 9999999999999998764 456778888777643
No 270
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.38 E-value=4.8e-12 Score=127.30 Aligned_cols=212 Identities=13% Similarity=0.103 Sum_probs=123.8
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..+++++|++...+.++.++.... ....+..-++|+||||||||++++++|+.+.........+.....
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~-----------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~ 149 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQV-----------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDF 149 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcc-----------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcc
Confidence 357899999998888887755432 111122348899999999999999999987542111011110000
Q ss_pred ccc------ccccccc---cchHHHHHHHHHc-------------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHh-
Q 013706 239 RTD------LVGEFVG---HTGPKTRRRIKEA-------------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS- 295 (438)
Q Consensus 239 ~~~------~~~~~~g---~~~~~~~~~~~~a-------------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~- 295 (438)
.++ .....++ .......+++..+ ...||||||++.+..... ..+..++.
T Consensus 150 ~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~--------~~lq~lLr~ 221 (637)
T TIGR00602 150 QKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDT--------RALHEILRW 221 (637)
T ss_pred cccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhH--------HHHHHHHHH
Confidence 000 0000011 1122233333332 236999999998764322 34555555
Q ss_pred -hccCCCEEEEEecCChhH------HHHhh----hCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhcccccccccccc
Q 013706 296 -VMDGGKVVVIFAGYSEPM------KRVIA----SNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFK 362 (438)
Q Consensus 296 -~~~~~~v~vi~~~~~~~~------~~~~~----~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~ 362 (438)
..+.+.+.+|++++.++. +..+. ..|++++ |. .+|.|++++..++...|++.+..+... ..
T Consensus 222 ~~~e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~-----~~ 295 (637)
T TIGR00602 222 KYVSIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKK-----NG 295 (637)
T ss_pred HhhcCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhc-----cc
Confidence 445666767776654332 11111 1367775 44 689999999999999999988875321 00
Q ss_pred ccccc-cHHHHHHHHHHHhhHhhhccccccchHHHHHHHHH
Q 013706 363 LHSSC-SMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 402 (438)
Q Consensus 363 ~~~~~-~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~ 402 (438)
-...+ +.+++..++... .|++|...+.++-++.
T Consensus 296 ~~~~~p~~~~l~~I~~~s-------~GDiRsAIn~LQf~~~ 329 (637)
T TIGR00602 296 EKIKVPKKTSVELLCQGC-------SGDIRSAINSLQFSSS 329 (637)
T ss_pred cccccCCHHHHHHHHHhC-------CChHHHHHHHHHHHHh
Confidence 01111 457777777744 6778888888887643
No 271
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.38 E-value=9e-13 Score=128.92 Aligned_cols=130 Identities=31% Similarity=0.285 Sum_probs=111.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
.|.+|||+|++.|+.++|+.++. .+..+|..+..|.||||.|++.||.+++.+|+.+|+|+-..|+.+.|+|-.||
T Consensus 81 kg~~plhlaaw~g~~e~vkmll~----q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~ 156 (854)
T KOG0507|consen 81 KGILPLHLAAWNGNLEIVKMLLL----QTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLAS 156 (854)
T ss_pred cCcceEEehhhcCcchHHHHHHh----cccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHH
Confidence 47899999999999999999998 45789999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcHHHHHHHHhCCCCC--------cccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706 83 WYSIRSEDYATVKTLLEYNADC--------SAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 141 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~--------~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~ 141 (438)
..|..+++.+|+...... ..++..+-+|+ |++...++.++.+.|+..|.+.+..
T Consensus 157 ----qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~pl-Hlaakngh~~~~~~ll~ag~din~~ 218 (854)
T KOG0507|consen 157 ----RFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPL-HLAAKNGHVECMQALLEAGFDINYT 218 (854)
T ss_pred ----HhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCc-chhhhcchHHHHHHHHhcCCCcccc
Confidence 678889998888652221 23456788888 7777788999999999888765543
No 272
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.37 E-value=1.2e-12 Score=88.81 Aligned_cols=54 Identities=50% Similarity=0.732 Sum_probs=46.2
Q ss_pred CChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHH
Q 013706 41 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLL 98 (438)
Q Consensus 41 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll 98 (438)
|+||||+|+..|+.+++++|++.|+++|.+|.+|+||||+|+ ..|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~----~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAA----KNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHH----HTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH----HccCHHHHHHHC
Confidence 789999999999999999999999999999999999999999 889999999986
No 273
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.37 E-value=1.3e-11 Score=115.30 Aligned_cols=159 Identities=18% Similarity=0.203 Sum_probs=104.3
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCC-----------
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI----------- 228 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~----------- 228 (438)
.|++++|++.+++.+.+.+.. .+-+..+||+||+|+||+++|+++|+.+.....
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~---------------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~ 66 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ---------------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEE 66 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh---------------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhccccc
Confidence 478999999999999987431 124578999999999999999999998864321
Q ss_pred cCCCCEEEeeccccc-cc--------ccc-------c-chHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCch
Q 013706 229 LPTDRVTEVQRTDLV-GE--------FVG-------H-TGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKD 284 (438)
Q Consensus 229 ~~~~~~~~~~~~~~~-~~--------~~g-------~-~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~ 284 (438)
.....++.+.+.... ++ ..| . .-..++++.+.. ...|++||++|.|...
T Consensus 67 ~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~------- 139 (314)
T PRK07399 67 GNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEA------- 139 (314)
T ss_pred CCCCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHH-------
Confidence 000111222221000 10 011 0 012344444332 3489999999999763
Q ss_pred hHHHHHHHHHhhccC-CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHh
Q 013706 285 YGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMN 350 (438)
Q Consensus 285 ~~~~~~~~ll~~~~~-~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~ 350 (438)
+.|.||..|++ .+.++|+.++.. +.+ -|++++|+ ..+.|++++.++..+++.....
T Consensus 140 ----aaNaLLK~LEEPp~~~fILi~~~~--~~L---l~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~ 196 (314)
T PRK07399 140 ----AANALLKTLEEPGNGTLILIAPSP--ESL---LPTIVSRC-QIIPFYRLSDEQLEQVLKRLGD 196 (314)
T ss_pred ----HHHHHHHHHhCCCCCeEEEEECCh--HhC---cHHHHhhc-eEEecCCCCHHHHHHHHHHhhc
Confidence 44899999986 233444443321 333 78899998 9999999999999999987643
No 274
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.37 E-value=1.3e-11 Score=116.29 Aligned_cols=154 Identities=14% Similarity=0.252 Sum_probs=102.3
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCc-CCCCEEEee
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL-PTDRVTEVQ 238 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~-~~~~~~~~~ 238 (438)
.|++++|++.+++.+.+.+.. ...+..+||+||+|+|||++|+.+|+.+...... ....+..+.
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~---------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~ 66 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK---------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFK 66 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc---------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEec
Confidence 488999999999998876431 1233456899999999999999999987532211 111232332
Q ss_pred cccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecC
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGY 309 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~ 309 (438)
+. .+..+ .-..++.+.+.. ...|++||++|.+... +.|.||..+++ ...++|++++
T Consensus 67 ~~--~~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~-----------a~naLLK~LEepp~~t~~il~~~ 131 (313)
T PRK05564 67 PI--NKKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQ-----------AQNAFLKTIEEPPKGVFIILLCE 131 (313)
T ss_pred cc--cCCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhcCHH-----------HHHHHHHHhcCCCCCeEEEEEeC
Confidence 21 01111 223455555432 3379999999999763 44899999997 3344444432
Q ss_pred ChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHH
Q 013706 310 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKM 349 (438)
Q Consensus 310 ~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l 349 (438)
. + +.+ .|++++|+ ..++|++|+.++....+....
T Consensus 132 ~-~-~~l---l~TI~SRc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 132 N-L-EQI---LDTIKSRC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred C-h-HhC---cHHHHhhc-eeeeCCCcCHHHHHHHHHHHh
Confidence 2 2 333 78899998 799999999999888776543
No 275
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.37 E-value=6.2e-13 Score=109.58 Aligned_cols=130 Identities=21% Similarity=0.321 Sum_probs=81.5
Q ss_pred ChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc
Q 013706 166 GLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE 245 (438)
Q Consensus 166 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 245 (438)
|.....+++++.+..+ +....+|+|+|+|||||+++|++|+... .....+|+.+++..+.
T Consensus 2 G~S~~~~~l~~~l~~~--------------a~~~~pvli~GE~GtGK~~~A~~lh~~~----~~~~~~~~~~~~~~~~-- 61 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERL--------------AKSSSPVLITGEPGTGKSLLARALHRYS----GRANGPFIVIDCASLP-- 61 (138)
T ss_dssp -SCHHHHHHHHHHHHH--------------HCSSS-EEEECCTTSSHHHHHHCCHHTT----TTCCS-CCCCCHHCTC--
T ss_pred CCCHHHHHHHHHHHHH--------------hCCCCcEEEEcCCCCCHHHHHHHHHhhc----CccCCCeEEechhhCc--
Confidence 4555555555554444 2466789999999999999999999843 3344567766666543
Q ss_pred ccccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhcc---CCCEEEEEecCChhHHHHh--hhC
Q 013706 246 FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD---GGKVVVIFAGYSEPMKRVI--ASN 320 (438)
Q Consensus 246 ~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~---~~~v~vi~~~~~~~~~~~~--~~~ 320 (438)
.+.++.+.+++|||+|+|.+.+..| ..|+..++ ..++.+|+++..+....+- ..+
T Consensus 62 ---------~~~l~~a~~gtL~l~~i~~L~~~~Q-----------~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~ 121 (138)
T PF14532_consen 62 ---------AELLEQAKGGTLYLKNIDRLSPEAQ-----------RRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFS 121 (138)
T ss_dssp ---------HHHHHHCTTSEEEEECGCCS-HHHH-----------HHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHH
T ss_pred ---------HHHHHHcCCCEEEECChHHCCHHHH-----------HHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchh
Confidence 4577889999999999999987554 45555543 4567777776544432111 113
Q ss_pred cCccCCC-CcceeCCC
Q 013706 321 EGFCRRV-TKFFHFND 335 (438)
Q Consensus 321 p~l~~R~-~~~i~~~~ 335 (438)
+.|..|| ...|.+|+
T Consensus 122 ~~L~~~l~~~~i~lPp 137 (138)
T PF14532_consen 122 PDLYYRLSQLEIHLPP 137 (138)
T ss_dssp HHHHHHCSTCEEEE--
T ss_pred HHHHHHhCCCEEeCCC
Confidence 5556666 45666665
No 276
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.36 E-value=3e-11 Score=109.24 Aligned_cols=213 Identities=17% Similarity=0.177 Sum_probs=138.4
Q ss_pred hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcC--CcCCCCEEEeecc
Q 013706 163 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG--ILPTDRVTEVQRT 240 (438)
Q Consensus 163 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~--~~~~~~~~~~~~~ 240 (438)
.-+|.+..++.+..+..-+..| ....++++||+|++|.|||++++.+.+.-.... -....|++.+...
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P----------~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P 104 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYP----------KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMP 104 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCC----------cccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecC
Confidence 3478888877777664434332 234678999999999999999999987542111 0112356666554
Q ss_pred ccc------cc---ccc----------cchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCC
Q 013706 241 DLV------GE---FVG----------HTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK 301 (438)
Q Consensus 241 ~~~------~~---~~g----------~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~ 301 (438)
.-. .. .+| +.+..+..+|+...--+|+|||+|.+.... ....+.++|.|-..-.+-+
T Consensus 105 ~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs----~~~qr~~Ln~LK~L~NeL~ 180 (302)
T PF05621_consen 105 PEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGS----YRKQREFLNALKFLGNELQ 180 (302)
T ss_pred CCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhccc----HHHHHHHHHHHHHHhhccC
Confidence 211 11 011 112223355666677999999999987532 1223456666666656677
Q ss_pred EEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCH-HHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHh
Q 013706 302 VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNS-EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET 380 (438)
Q Consensus 302 v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~-~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (438)
+.+|+.++.+... .+..||-+.+|| ..+.+|.... ++...++..+-.... +.....+....+...+...+
T Consensus 181 ipiV~vGt~~A~~-al~~D~QLa~RF-~~~~Lp~W~~d~ef~~LL~s~e~~LP-------Lr~~S~l~~~~la~~i~~~s 251 (302)
T PF05621_consen 181 IPIVGVGTREAYR-ALRTDPQLASRF-EPFELPRWELDEEFRRLLASFERALP-------LRKPSNLASPELARRIHERS 251 (302)
T ss_pred CCeEEeccHHHHH-HhccCHHHHhcc-CCccCCCCCCCcHHHHHHHHHHHhCC-------CCCCCCCCCHHHHHHHHHHc
Confidence 8888888777766 456789999999 6777777765 566666666555443 33334456666766666555
Q ss_pred hHhhhccccccchHHHHHHHHHHh
Q 013706 381 TEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 381 ~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
.|+..++..++..|...|
T Consensus 252 ------~G~iG~l~~ll~~aA~~A 269 (302)
T PF05621_consen 252 ------EGLIGELSRLLNAAAIAA 269 (302)
T ss_pred ------CCchHHHHHHHHHHHHHH
Confidence 788888999999888877
No 277
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.36 E-value=4.8e-14 Score=110.49 Aligned_cols=109 Identities=25% Similarity=0.326 Sum_probs=58.7
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecc-c-ccccccccchHHH-HHHHHHcc----CcEEEEeCccc
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT-D-LVGEFVGHTGPKT-RRRIKEAE----GGILFVDEAYR 273 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~-~-~~~~~~g~~~~~~-~~~~~~a~----~~il~iDEid~ 273 (438)
|+||.|+||+|||++|+++|+.++. .|..++.. + +.+...|..--.. ...|+-.. ..|+|+|||.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~-------~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGL-------SFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT---------EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCC-------ceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeeccccc
Confidence 7899999999999999999998876 55555443 2 2222223210000 01111111 27999999999
Q ss_pred ccCCCCCCCchhHHHHHHHHHhhccCCC-------------EEEEEecCChhHHHHhhhCcCccCCC
Q 013706 274 LIPMQKADDKDYGIEALEEIMSVMDGGK-------------VVVIFAGYSEPMKRVIASNEGFCRRV 327 (438)
Q Consensus 274 l~~~~~~~~~~~~~~~~~~ll~~~~~~~-------------v~vi~~~~~~~~~~~~~~~p~l~~R~ 327 (438)
..++.| +.||+.|++++ ++||++.|+...........++++||
T Consensus 74 appktQ-----------sAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 74 APPKTQ-----------SALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp S-HHHH-----------HHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred CCHHHH-----------HHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 988544 99999998643 46677766544444445567888887
No 278
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.34 E-value=3.3e-12 Score=111.27 Aligned_cols=129 Identities=16% Similarity=0.237 Sum_probs=83.8
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC-----------------CEEEeecccccccccccchHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD-----------------RVTEVQRTDLVGEFVGHTGPKTRRRIKE 260 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~-----------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 260 (438)
.+..+||+||||+|||++|+.+++.+......... .+..+... +... ....++.+++.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~~--~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQSI--KVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCcC--CHHHHHHHHHH
Confidence 34569999999999999999999988542110000 11111111 0011 12344444444
Q ss_pred c-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcce
Q 013706 261 A-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFF 331 (438)
Q Consensus 261 a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i 331 (438)
+ ...|+||||+|.+... .++.|+..|++ ...++|++++.. ..+ .|++++|+ ..+
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~~-----------~~~~Ll~~le~~~~~~~~il~~~~~--~~l---~~~i~sr~-~~~ 150 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNEA-----------AANALLKTLEEPPPNTLFILITPSP--EKL---LPTIRSRC-QVL 150 (188)
T ss_pred HccCcccCCeEEEEEechhhhCHH-----------HHHHHHHHhcCCCCCeEEEEEECCh--HhC---hHHHHhhc-EEe
Confidence 3 2379999999999763 34889999886 335555554322 333 78899998 799
Q ss_pred eCCCCCHHHHHHHHHHH
Q 013706 332 HFNDFNSEELAKILHIK 348 (438)
Q Consensus 332 ~~~~~~~~e~~~il~~~ 348 (438)
.|++|+.+++.+++...
T Consensus 151 ~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ 167 (188)
T ss_pred eCCCCCHHHHHHHHHHc
Confidence 99999999998888764
No 279
>PRK04132 replication factor C small subunit; Provisional
Probab=99.34 E-value=7.9e-12 Score=128.91 Aligned_cols=160 Identities=22% Similarity=0.205 Sum_probs=118.1
Q ss_pred CceEEec--CCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHc---------cCcEEEE
Q 013706 200 PHMAFLG--NPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---------EGGILFV 268 (438)
Q Consensus 200 ~~~ll~G--ppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a---------~~~il~i 268 (438)
-+-+..| |++.||||+|+++|++++.. .....++++++++..+. ..++.+++.+ +..|+||
T Consensus 565 ~~~~~~G~lPh~lGKTT~A~ala~~l~g~--~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 565 YHNFIGGNLPTVLHNTTAALALARELFGE--NWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred hhhhhcCCCCCcccHHHHHHHHHHhhhcc--cccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 3456679 99999999999999988532 12347999999985321 2344444321 1259999
Q ss_pred eCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHH
Q 013706 269 DEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILH 346 (438)
Q Consensus 269 DEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~ 346 (438)
||+|.|....| +.|+..|+. +.+.+|++++.. ..+ .|++++|+ ..+.|++|+.+++...++
T Consensus 637 DEaD~Lt~~AQ-----------nALLk~lEep~~~~~FILi~N~~--~kI---i~tIrSRC-~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 637 DEADALTQDAQ-----------QALRRTMEMFSSNVRFILSCNYS--SKI---IEPIQSRC-AIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred ECcccCCHHHH-----------HHHHHHhhCCCCCeEEEEEeCCh--hhC---chHHhhhc-eEEeCCCCCHHHHHHHHH
Confidence 99999987444 999999996 566666664432 333 68899997 999999999999999999
Q ss_pred HHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHH
Q 013706 347 IKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARE 402 (438)
Q Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~ 402 (438)
..+.++. ..++++++..++... .|+.|...++++.+..
T Consensus 700 ~I~~~Eg-----------i~i~~e~L~~Ia~~s-------~GDlR~AIn~Lq~~~~ 737 (846)
T PRK04132 700 YIAENEG-----------LELTEEGLQAILYIA-------EGDMRRAINILQAAAA 737 (846)
T ss_pred HHHHhcC-----------CCCCHHHHHHHHHHc-------CCCHHHHHHHHHHHHH
Confidence 8887642 335677888888765 6778888899887654
No 280
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.33 E-value=1.4e-10 Score=99.79 Aligned_cols=200 Identities=20% Similarity=0.281 Sum_probs=129.6
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..+.+++|.+..++.+.+-.... ....+..||||+|..||||++++|++..++...+. .+++++
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F------------~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~gl----rLVEV~ 120 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQF------------AEGLPANNVLLWGARGTGKSSLVKALLNEYADEGL----RLVEVD 120 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHH------------HcCCcccceEEecCCCCChHHHHHHHHHHHHhcCC----eEEEEc
Confidence 46889999999999888754433 12346778999999999999999999999987665 489999
Q ss_pred cccccccccccchHHHHHHHHHc-cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC------CCEEEEEecCCh
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKVVVIFAGYSE 311 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a-~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------~~v~vi~~~~~~ 311 (438)
..++.. -..+-+.++.. ..-|||.|+.- + +.+...-..|...+|+ .+|++-+++|+.
T Consensus 121 k~dl~~------Lp~l~~~Lr~~~~kFIlFcDDLS-F---------e~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 121 KEDLAT------LPDLVELLRARPEKFILFCDDLS-F---------EEGDDAYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred HHHHhh------HHHHHHHHhcCCceEEEEecCCC-C---------CCCchHHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 887642 11222223322 34799999861 1 1112333667777776 346666665543
Q ss_pred hHH-HHhhhC----------------cCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHH
Q 013706 312 PMK-RVIASN----------------EGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAA 374 (438)
Q Consensus 312 ~~~-~~~~~~----------------p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (438)
... ....-+ -+|.+||...+.|++++.++-..|+..+.++. ++.+ +++.+..
T Consensus 185 HLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~-------~l~~----~~e~l~~ 253 (287)
T COG2607 185 HLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHF-------GLDI----SDEELHA 253 (287)
T ss_pred ccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHc-------CCCC----CHHHHHH
Confidence 332 111111 14667999999999999999999999999874 3333 3344444
Q ss_pred HHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706 375 LIEKETTEKQRREMNGGLVDPMLVNAREN 403 (438)
Q Consensus 375 ~~~~~~~~~~~~~~n~~~l~~~~~~a~~~ 403 (438)
.+-.+ +..+..-+||-..+.++....+
T Consensus 254 eAl~W--At~rg~RSGR~A~QF~~~~~g~ 280 (287)
T COG2607 254 EALQW--ATTRGGRSGRVAWQFIRDLAGR 280 (287)
T ss_pred HHHHH--HHhcCCCccHhHHHHHHHHHhh
Confidence 33332 2223355677777776654433
No 281
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.33 E-value=1.9e-12 Score=122.79 Aligned_cols=135 Identities=21% Similarity=0.269 Sum_probs=89.3
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccc--cccccccchHHHH----HHHHHcc-------Cc
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL--VGEFVGHTGPKTR----RRIKEAE-------GG 264 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~----~~~~~a~-------~~ 264 (438)
...++||.||||||||++|+.+|+.++. +|+.+++... .+..+|...-... ..+.--. .+
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~-------~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ 114 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGL-------PFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRV 114 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCC-------CeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccce
Confidence 4679999999999999999999999875 7777777642 2333443221111 1111111 14
Q ss_pred EEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC--------------CEEEEEecCChhHHHHhhhCcCccCCCCcc
Q 013706 265 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKF 330 (438)
Q Consensus 265 il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~--------------~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~ 330 (438)
|+|+|||++..+. +.+.|++.|++. .+++|+++|+-........++++++||...
T Consensus 115 ill~DEInra~p~-----------~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~ 183 (329)
T COG0714 115 ILLLDEINRAPPE-----------VQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLR 183 (329)
T ss_pred EEEEeccccCCHH-----------HHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEE
Confidence 9999999999874 449999999862 235555545433333333378899999999
Q ss_pred eeCCCCCHHHHHHHHHHHHh
Q 013706 331 FHFNDFNSEELAKILHIKMN 350 (438)
Q Consensus 331 i~~~~~~~~e~~~il~~~l~ 350 (438)
+.++.|..++...++.....
T Consensus 184 ~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 184 IYVDYPDSEEEERIILARVG 203 (329)
T ss_pred EecCCCCchHHHHHHHHhCc
Confidence 99999965554454444333
No 282
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.33 E-value=5e-11 Score=113.99 Aligned_cols=155 Identities=19% Similarity=0.262 Sum_probs=89.8
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..++++.+.+...+.+...+. ..++++|+||||||||++|+.+|..+..........++.++
T Consensus 172 ~~l~d~~i~e~~le~l~~~L~------------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFH 233 (459)
T PRK11331 172 DALNDLFIPETTIETILKRLT------------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFH 233 (459)
T ss_pred HHhhcccCCHHHHHHHHHHHh------------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeec
Confidence 346777887776666654321 35799999999999999999999987432111122234444
Q ss_pred cc----cccccc----cccc--hHHHHHHHHHc-----cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC----
Q 013706 239 RT----DLVGEF----VGHT--GPKTRRRIKEA-----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---- 299 (438)
Q Consensus 239 ~~----~~~~~~----~g~~--~~~~~~~~~~a-----~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~---- 299 (438)
.+ +++..+ +|.. .....+++..| .+.+||||||++...++ +...+++.|+.
T Consensus 234 psySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k----------iFGel~~lLE~~~rg 303 (459)
T PRK11331 234 QSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK----------VFGEVMMLMEHDKRG 303 (459)
T ss_pred ccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH----------hhhhhhhhccccccc
Confidence 32 232221 2211 11222333333 35899999999876532 22333333321
Q ss_pred --------------------CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCC-CCHHHHHH
Q 013706 300 --------------------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFND-FNSEELAK 343 (438)
Q Consensus 300 --------------------~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~-~~~~e~~~ 343 (438)
.++.+|+|.|+.+- .+...|+||+||| ..|++.+ ++.++...
T Consensus 304 ~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Dr-s~~~lD~AlrRRF-~fi~i~p~~~~~~~~~ 366 (459)
T PRK11331 304 ENWSVPLTYSENDEERFYVPENVYIIGLMNTADR-SLAVVDYALRRRF-SFIDIEPGFDTPQFRN 366 (459)
T ss_pred cccceeeeccccccccccCCCCeEEEEecCcccc-chhhccHHHHhhh-heEEecCCCChHHHHH
Confidence 35788888765552 2223499999999 5566654 55544333
No 283
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.32 E-value=6.3e-11 Score=112.18 Aligned_cols=179 Identities=16% Similarity=0.218 Sum_probs=124.4
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHccC-cEEEEeCcccccC
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEG-GILFVDEAYRLIP 276 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~-~il~iDEid~l~~ 276 (438)
....++||||+|.|||-|+.+++++....+. +..++.++...+...++-..-.+-..-|++.-. -+++||+|+.+..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~--~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~g 189 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGP--NARVVYLTSEDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAG 189 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCC--CceEEeccHHHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHhcC
Confidence 4567999999999999999999998865432 334666776666655543322222233333223 5999999999987
Q ss_pred CCCCCCchhHHHHHHHHHhhccCCCEEEEEecC-ChhHHHHhhhCcCccCCC--CcceeCCCCCHHHHHHHHHHHHhccc
Q 013706 277 MQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY-SEPMKRVIASNEGFCRRV--TKFFHFNDFNSEELAKILHIKMNNQT 353 (438)
Q Consensus 277 ~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~-~~~~~~~~~~~p~l~~R~--~~~i~~~~~~~~e~~~il~~~l~~~~ 353 (438)
+.. ...+..+.|-...+.++-+|+.+.. +..+..+ .|.|++|| ...+.+.+|+.+.+..|+........
T Consensus 190 k~~-----~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~---~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~ 261 (408)
T COG0593 190 KER-----TQEEFFHTFNALLENGKQIVLTSDRPPKELNGL---EDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRG 261 (408)
T ss_pred Chh-----HHHHHHHHHHHHHhcCCEEEEEcCCCchhhccc---cHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcC
Confidence 532 1335667777777777644444432 3332233 68899999 77889999999999999999666542
Q ss_pred cccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 354 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
..++++++..++... ..|.|++...+++....+
T Consensus 262 -----------~~i~~ev~~~la~~~-------~~nvReLegaL~~l~~~a 294 (408)
T COG0593 262 -----------IEIPDEVLEFLAKRL-------DRNVRELEGALNRLDAFA 294 (408)
T ss_pred -----------CCCCHHHHHHHHHHh-------hccHHHHHHHHHHHHHHH
Confidence 456778888888876 577888888888777655
No 284
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.31 E-value=8e-12 Score=111.71 Aligned_cols=156 Identities=15% Similarity=0.165 Sum_probs=103.7
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 239 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 239 (438)
.++++++++++...+.++.. ...-+|.|||||||||||+...+.|..++.+ .-.+.-+.+++.
T Consensus 39 ~l~dv~~~~ei~st~~~~~~----------------~~~lPh~L~YgPPGtGktsti~a~a~~ly~~-~~~~~m~lelna 101 (360)
T KOG0990|consen 39 FLGIVIKQEPIWSTENRYSG----------------MPGLPHLLFYGPPGTGKTSTILANARDFYSP-HPTTSMLLELNA 101 (360)
T ss_pred hhhhHhcCCchhhHHHHhcc----------------CCCCCcccccCCCCCCCCCchhhhhhhhcCC-CCchhHHHHhhc
Confidence 56777888888777777622 2345599999999999999999999988752 111112344444
Q ss_pred ccccccccccchHHHHHHHHHc----------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC---CCEEEEE
Q 013706 240 TDLVGEFVGHTGPKTRRRIKEA----------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIF 306 (438)
Q Consensus 240 ~~~~~~~~g~~~~~~~~~~~~a----------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~---~~v~vi~ 306 (438)
++-.+-.+- ......|..+ .-..+++||+|.+....| |+|-+.++. +.-+.+.
T Consensus 102 Sd~rgid~v---r~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQ-----------nALRRviek~t~n~rF~ii 167 (360)
T KOG0990|consen 102 SDDRGIDPV---RQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQ-----------NALRRVIEKYTANTRFATI 167 (360)
T ss_pred cCccCCcch---HHHHHHHHhhccceeccccCceeEEEecchhHhhHHHH-----------HHHHHHHHHhccceEEEEe
Confidence 443222111 1111222222 236899999999987555 777777765 2233334
Q ss_pred ecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccc
Q 013706 307 AGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQT 353 (438)
Q Consensus 307 ~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~ 353 (438)
+++.... .|++++|| ..+.|.+.+..+..+.+.+.++.+.
T Consensus 168 ~n~~~ki------~pa~qsRc-trfrf~pl~~~~~~~r~shi~e~e~ 207 (360)
T KOG0990|consen 168 SNPPQKI------HPAQQSRC-TRFRFAPLTMAQQTERQSHIRESEQ 207 (360)
T ss_pred ccChhhc------Cchhhccc-ccCCCCCCChhhhhhHHHHHHhcch
Confidence 4333332 89999999 8899999999999999999988764
No 285
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.29 E-value=9.3e-12 Score=103.74 Aligned_cols=124 Identities=23% Similarity=0.248 Sum_probs=76.3
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHH------HHHHHHHccCcEEEEeCc
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPK------TRRRIKEAEGGILFVDEA 271 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------~~~~~~~a~~~il~iDEi 271 (438)
...+++++||||||||++++.+++.+.. ...+++.+++.............. .........+++|+|||+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~ 93 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFR----PGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEI 93 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhc----CCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeCh
Confidence 4578999999999999999999998742 123677777766544332221111 111222335699999999
Q ss_pred ccccCCCCCCCchhHHHHHHHHHhhcc----CCCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCC
Q 013706 272 YRLIPMQKADDKDYGIEALEEIMSVMD----GGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFND 335 (438)
Q Consensus 272 d~l~~~~~~~~~~~~~~~~~~ll~~~~----~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~ 335 (438)
+.+.+. ........+....+ ...+.+|++++...... .++.+.+||+..+.+++
T Consensus 94 ~~~~~~-------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~---~~~~~~~r~~~~i~~~~ 151 (151)
T cd00009 94 DSLSRG-------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGD---LDRALYDRLDIRIVIPL 151 (151)
T ss_pred hhhhHH-------HHHHHHHHHHhcCceeccCCCeEEEEecCccccCC---cChhHHhhhccEeecCC
Confidence 988331 11122222333322 25677888776655312 26778889988887763
No 286
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.29 E-value=8.7e-12 Score=117.86 Aligned_cols=155 Identities=16% Similarity=0.218 Sum_probs=99.3
Q ss_pred HHhhhcC-hHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCc-eEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706 160 ELSNIVG-LHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 237 (438)
Q Consensus 160 ~l~~i~G-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 237 (438)
.|+.++| ++.+++.+...+. ....+| +||+||+|+|||++|+.+|+.+.........++-.+
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~----------------~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C 66 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA----------------KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTC 66 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH----------------cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcC
Confidence 3677888 8888888887643 123344 699999999999999999998864321111111000
Q ss_pred e---------cccccc-ccccc--chHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhcc
Q 013706 238 Q---------RTDLVG-EFVGH--TGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD 298 (438)
Q Consensus 238 ~---------~~~~~~-~~~g~--~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~ 298 (438)
. -.++.- ..-|. .-..++.+.+.. ...|++|||+|.+.. .+.|.||..++
T Consensus 67 ~~c~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~-----------~a~NaLLK~LE 135 (329)
T PRK08058 67 TNCKRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA-----------SAANSLLKFLE 135 (329)
T ss_pred HHHHHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH-----------HHHHHHHHHhc
Confidence 0 001100 00011 112444444332 337999999999976 44599999999
Q ss_pred C--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHH
Q 013706 299 G--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHI 347 (438)
Q Consensus 299 ~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~ 347 (438)
+ ..+++|++++.. ..+ .|++++|+ ..++|++|+.++..++++.
T Consensus 136 EPp~~~~~Il~t~~~--~~l---l~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 136 EPSGGTTAILLTENK--HQI---LPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred CCCCCceEEEEeCCh--HhC---cHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 7 556666654422 233 68899998 9999999999998777753
No 287
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.29 E-value=1.5e-12 Score=107.71 Aligned_cols=108 Identities=28% Similarity=0.417 Sum_probs=66.2
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccc--ccccccchHH------HHHHHHH--ccCcEEEEeC
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV--GEFVGHTGPK------TRRRIKE--AEGGILFVDE 270 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~------~~~~~~~--a~~~il~iDE 270 (438)
+|+|+||||||||++|+.+|+.+.. +++.++.+... .+++|.-... ....+.. .+++++||||
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~-------~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDE 73 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGR-------PVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDE 73 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTC-------EEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhc-------ceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECC
Confidence 5899999999999999999998854 66666655321 1222221100 0000111 1679999999
Q ss_pred cccccCCCCCCCchhHHHHHHHHHhhccCC---------------------CEEEEEecCChhHHHHhhhCcCccCCC
Q 013706 271 AYRLIPMQKADDKDYGIEALEEIMSVMDGG---------------------KVVVIFAGYSEPMKRVIASNEGFCRRV 327 (438)
Q Consensus 271 id~l~~~~~~~~~~~~~~~~~~ll~~~~~~---------------------~v~vi~~~~~~~~~~~~~~~p~l~~R~ 327 (438)
++...+ .++..|+..++++ .+.+|++.++.. ...-..+++|++||
T Consensus 74 in~a~~-----------~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~-~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 74 INRAPP-----------EVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD-KGRKELSPALLDRF 139 (139)
T ss_dssp CGG--H-----------HHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST---TTTTCHHHHTT-
T ss_pred cccCCH-----------HHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC-CCcCcCCHHHHhhC
Confidence 988765 6667777777651 167788877666 22223488999997
No 288
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.26 E-value=2.8e-10 Score=112.07 Aligned_cols=201 Identities=16% Similarity=0.174 Sum_probs=124.8
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHH---H--------------hcCCCCCCCCC-CceEEecCCCCCHHHHHHHHH
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERR---K--------------ALGLKVGARRP-PHMAFLGNPGTGKTMVARILG 220 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~---~--------------~~~~~~~~~~~-~~~ll~GppGtGKT~la~~la 220 (438)
+.|.++.|-+.+.+.+..|++..-.--.+ . ........+|+ +-+||+||||-||||||+.+|
T Consensus 268 k~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLAHViA 347 (877)
T KOG1969|consen 268 KKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLAHVIA 347 (877)
T ss_pred hHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHHHHHH
Confidence 46788888888877777766532111111 1 11111222333 346799999999999999999
Q ss_pred HHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHH-------ccCcEEEEeCcccccCCCCCCCchhHHHHHHHH
Q 013706 221 RLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEI 293 (438)
Q Consensus 221 ~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~l 293 (438)
+..+. .++++++++-...- ....++..++.. .++.-|+|||||--.+ .+++.+
T Consensus 348 kqaGY-------sVvEINASDeRt~~--~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~-----------~~Vdvi 407 (877)
T KOG1969|consen 348 KQAGY-------SVVEINASDERTAP--MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPR-----------AAVDVI 407 (877)
T ss_pred HhcCc-------eEEEecccccccHH--HHHHHHHHHHhhccccccCCCcceEEEecccCCcH-----------HHHHHH
Confidence 99887 89999999753210 011122222211 2457899999985542 455666
Q ss_pred HhhccC---------C--------------CEEEEEecCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHH
Q 013706 294 MSVMDG---------G--------------KVVVIFAGYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIK 348 (438)
Q Consensus 294 l~~~~~---------~--------------~v~vi~~~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~ 348 (438)
+..+.. + .--+||.. ++-+ .|+|+. -|..+|.|.+|+..-+.+-|+..
T Consensus 408 lslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICIC-NdLY------aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~I 480 (877)
T KOG1969|consen 408 LSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICIC-NDLY------APALRPLRPFAEIIAFVPPSQSRLVERLNEI 480 (877)
T ss_pred HHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEe-cCcc------chhhhhcccceEEEEecCCChhHHHHHHHHH
Confidence 666641 0 01233321 2222 566654 56899999999999888888888
Q ss_pred HhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 349 MNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
+.++. ..++..++..+++.+ .++.|...|-++-...+.
T Consensus 481 C~rE~-----------mr~d~~aL~~L~el~-------~~DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 481 CHREN-----------MRADSKALNALCELT-------QNDIRSCINTLQFLASNV 518 (877)
T ss_pred Hhhhc-----------CCCCHHHHHHHHHHh-------cchHHHHHHHHHHHHHhc
Confidence 87763 346778899999877 345555556655544443
No 289
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.26 E-value=2.8e-12 Score=87.44 Aligned_cols=54 Identities=44% Similarity=0.640 Sum_probs=32.2
Q ss_pred HHHCC-CCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccc
Q 013706 60 LLAHG-AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDH 117 (438)
Q Consensus 60 Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~ 117 (438)
|+++| ++++.+|..|.||||+|| ..|+.+++++|++.|++++.+|..|+||+++
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~----~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~ 55 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAA----RYGHSEVVRLLLQNGADPNAKDKDGQTPLHY 55 (56)
T ss_dssp -----T--TT---TTS--HHHHHH----HHT-HHHHHHHHHCT--TT---TTS--HHHH
T ss_pred CCccCcCCCcCcCCCCCcHHHHHH----HcCcHHHHHHHHHCcCCCCCCcCCCCCHHHh
Confidence 57778 899999999999999999 8899999999999999999999999999954
No 290
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.25 E-value=3.8e-10 Score=105.19 Aligned_cols=79 Identities=19% Similarity=0.201 Sum_probs=57.5
Q ss_pred cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCC-------------EEEEEecCChhHHHH--hhhCcCccCC
Q 013706 262 EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-------------VVVIFAGYSEPMKRV--IASNEGFCRR 326 (438)
Q Consensus 262 ~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~-------------v~vi~~~~~~~~~~~--~~~~p~l~~R 326 (438)
..||+-|+|+.+... +.++.||..++++. .++|+++|+.++... .....+|++|
T Consensus 236 NrGi~~f~Ei~K~~~-----------~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR 304 (361)
T smart00763 236 NRGILEFVEMFKADI-----------KFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDR 304 (361)
T ss_pred cCceEEEeehhcCCH-----------HHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhc
Confidence 448888888887765 67799999998632 366777666665533 2446899999
Q ss_pred CCcceeCCCCCH-HHHHHHHHHHHhcc
Q 013706 327 VTKFFHFNDFNS-EELAKILHIKMNNQ 352 (438)
Q Consensus 327 ~~~~i~~~~~~~-~e~~~il~~~l~~~ 352 (438)
+ ..+.+|.+.. ++-.+|.++.+...
T Consensus 305 ~-~~i~vpY~l~~~~E~~Iy~k~~~~s 330 (361)
T smart00763 305 I-IKVKVPYCLRVSEEAQIYEKLLRNS 330 (361)
T ss_pred e-EEEeCCCcCCHHHHHHHHHHHhccC
Confidence 9 4888988864 66678888887753
No 291
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.24 E-value=9.1e-12 Score=123.46 Aligned_cols=127 Identities=29% Similarity=0.311 Sum_probs=103.8
Q ss_pred CCCcHHHHHHHc---CCHHHHHHHhcCCCCCCcccccc----cCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccC---
Q 013706 3 MAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVELEAQ----NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN--- 72 (438)
Q Consensus 3 ~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~----d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~--- 72 (438)
.|.|.||.|..+ ++-++++.|++. -+.-+|.. ...|.||||+|+.+.+.++|++|++.|||+|++..
T Consensus 142 ~GET~Lh~~lL~~~~~~n~la~~LL~~---~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~F 218 (782)
T KOG3676|consen 142 TGETLLHKALLNLSDGHNELARVLLEI---FPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAF 218 (782)
T ss_pred hhhhHHHHHHhcCchhHHHHHHHHHHH---hHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccc
Confidence 589999999974 466899999984 22223321 25799999999999999999999999999986431
Q ss_pred --------------------CCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHH
Q 013706 73 --------------------NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 132 (438)
Q Consensus 73 --------------------~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~ 132 (438)
.|..||.+|+ .-++.+++++|+++|||++..|.+|+|.||. +.-.-..++-.+++
T Consensus 219 F~~~dqk~~rk~T~Y~G~~YfGEyPLSfAA----C~nq~eivrlLl~~gAd~~aqDS~GNTVLH~-lVi~~~~~My~~~L 293 (782)
T KOG3676|consen 219 FCPDDQKASRKSTNYTGYFYFGEYPLSFAA----CTNQPEIVRLLLAHGADPNAQDSNGNTVLHM-LVIHFVTEMYDLAL 293 (782)
T ss_pred cCcccccccccccCCcceeeeccCchHHHH----HcCCHHHHHHHHhcCCCCCccccCCChHHHH-HHHHHHHHHHHHHH
Confidence 4789999999 6789999999999999999999999999944 44456677888888
Q ss_pred hccch
Q 013706 133 WHSEE 137 (438)
Q Consensus 133 ~~~~~ 137 (438)
..++.
T Consensus 294 ~~ga~ 298 (782)
T KOG3676|consen 294 ELGAN 298 (782)
T ss_pred hcCCC
Confidence 77776
No 292
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.23 E-value=7.6e-10 Score=108.83 Aligned_cols=234 Identities=17% Similarity=0.186 Sum_probs=155.2
Q ss_pred hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHH---HcCCcCCCCEEEee
Q 013706 162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLY---MVGILPTDRVTEVQ 238 (438)
Q Consensus 162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~---~~~~~~~~~~~~~~ 238 (438)
+.+-+.+....+|..+++..... .....-+.+.|-||||||.+++.+-+.|. ..+-.....+++++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~-----------~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveIN 464 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISD-----------QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEIN 464 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCC-----------CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEc
Confidence 34556666667777665543211 01223577889999999999999988775 34455666889999
Q ss_pred cccccc----------cccccch------HHHHHHHH----HccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhcc
Q 013706 239 RTDLVG----------EFVGHTG------PKTRRRIK----EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD 298 (438)
Q Consensus 239 ~~~~~~----------~~~g~~~------~~~~~~~~----~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~ 298 (438)
+-.+.+ .+-|+.. ..+...|. ....+||+|||.|.|....| .++..|..+-.
T Consensus 465 gm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q--------dVlYn~fdWpt 536 (767)
T KOG1514|consen 465 GLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ--------DVLYNIFDWPT 536 (767)
T ss_pred ceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH--------HHHHHHhcCCc
Confidence 876543 2344421 12233343 12348999999999998877 66666666653
Q ss_pred --CCCEEEEE-ecCChhHHHHhhhCcCccCCC-CcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHH
Q 013706 299 --GGKVVVIF-AGYSEPMKRVIASNEGFCRRV-TKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAA 374 (438)
Q Consensus 299 --~~~v~vi~-~~~~~~~~~~~~~~p~l~~R~-~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (438)
+.+++||+ +++.+..++++ .+-..+|+ -..|.|.+|+.+++++|+...|+.. ..++.++++-
T Consensus 537 ~~~sKLvvi~IaNTmdlPEr~l--~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~------------~~f~~~aiel 602 (767)
T KOG1514|consen 537 LKNSKLVVIAIANTMDLPERLL--MNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL------------DAFENKAIEL 602 (767)
T ss_pred CCCCceEEEEecccccCHHHHh--ccchhhhccceeeecCCCCHHHHHHHHHHhhcch------------hhcchhHHHH
Confidence 35666666 44555556665 34455666 4689999999999999999988754 2234455554
Q ss_pred HHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706 375 LIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 434 (438)
Q Consensus 375 ~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~ 434 (438)
.+++ .++ -.|+.|....++++|.+.+..+...+ ..+....|++-|+.+|+..+.
T Consensus 603 vark-VAa---vSGDaRraldic~RA~Eia~~~~~~~--k~~~~q~v~~~~v~~Ai~em~ 656 (767)
T KOG1514|consen 603 VARK-VAA---VSGDARRALDICRRAAEIAEERNVKG--KLAVSQLVGILHVMEAINEML 656 (767)
T ss_pred HHHH-HHh---ccccHHHHHHHHHHHHHHhhhhcccc--cccccceeehHHHHHHHHHHh
Confidence 4443 321 25677888999999999987776633 234456788999999988764
No 293
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.23 E-value=3.6e-11 Score=114.46 Aligned_cols=144 Identities=21% Similarity=0.218 Sum_probs=92.7
Q ss_pred hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCc-eEEecCCCCCHHHHHHHHHHHHHHcCCc------------
Q 013706 163 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPH-MAFLGNPGTGKTMVARILGRLLYMVGIL------------ 229 (438)
Q Consensus 163 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~GppGtGKT~la~~la~~l~~~~~~------------ 229 (438)
++.|.+.+...+..+.... ...+| +||+||||||||++|.++|+.+......
T Consensus 2 ~~~~~~~~~~~l~~~~~~~---------------~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~ 66 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES---------------GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCK 66 (325)
T ss_pred CcccchhHHHHHHHHHHhc---------------CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhh
Confidence 3456666666555553211 13455 9999999999999999999999732211
Q ss_pred -----CCCCEEEeecccccccccccchHHHHHHHHH---c----cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhc
Q 013706 230 -----PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE---A----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM 297 (438)
Q Consensus 230 -----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---a----~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~ 297 (438)
....++++++++.....+ ....++++.+. . ...|++|||+|.+... +.+.|+..+
T Consensus 67 ~~~~~~~~d~lel~~s~~~~~~i--~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~-----------A~nallk~l 133 (325)
T COG0470 67 LIPAGNHPDFLELNPSDLRKIDI--IVEQVRELAEFLSESPLEGGYKVVIIDEADKLTED-----------AANALLKTL 133 (325)
T ss_pred HHhhcCCCceEEecccccCCCcc--hHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHH-----------HHHHHHHHh
Confidence 123677888776544321 12233333322 2 2379999999999874 449999999
Q ss_pred cC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHH
Q 013706 298 DG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEE 340 (438)
Q Consensus 298 ~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e 340 (438)
+. ....+|++++ ....+ -|.+++|+ ..++|++++..+
T Consensus 134 Eep~~~~~~il~~n--~~~~i---l~tI~SRc-~~i~f~~~~~~~ 172 (325)
T COG0470 134 EEPPKNTRFILITN--DPSKI---LPTIRSRC-QRIRFKPPSRLE 172 (325)
T ss_pred ccCCCCeEEEEEcC--Chhhc---cchhhhcc-eeeecCCchHHH
Confidence 86 4455555544 22222 57889998 899998865543
No 294
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.23 E-value=3.3e-11 Score=101.79 Aligned_cols=136 Identities=18% Similarity=0.239 Sum_probs=82.0
Q ss_pred ChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcC---------------
Q 013706 166 GLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP--------------- 230 (438)
Q Consensus 166 G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~--------------- 230 (438)
|++.+.+.+...+.. ..-+..+||+||+|+||+++|+.+|+.+.......
T Consensus 1 gq~~~~~~L~~~~~~---------------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~ 65 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS---------------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEG 65 (162)
T ss_dssp S-HHHHHHHHHHHHC---------------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHc---------------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhc
Confidence 677777777776431 12344479999999999999999999886543321
Q ss_pred -CCCEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--C
Q 013706 231 -TDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--G 300 (438)
Q Consensus 231 -~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~ 300 (438)
...++.++...... . -....++.+.+.. ...|++|||+|.|.. .+.|.||..||+ .
T Consensus 66 ~~~d~~~~~~~~~~~-~--i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~-----------~a~NaLLK~LEepp~ 131 (162)
T PF13177_consen 66 NHPDFIIIKPDKKKK-S--IKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE-----------EAQNALLKTLEEPPE 131 (162)
T ss_dssp -CTTEEEEETTTSSS-S--BSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H-----------HHHHHHHHHHHSTTT
T ss_pred cCcceEEEecccccc-h--hhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH-----------HHHHHHHHHhcCCCC
Confidence 22333333322100 0 1224555555544 236999999999987 455999999998 3
Q ss_pred CEEEEEec-CChhHHHHhhhCcCccCCCCcceeCCCCC
Q 013706 301 KVVVIFAG-YSEPMKRVIASNEGFCRRVTKFFHFNDFN 337 (438)
Q Consensus 301 ~v~vi~~~-~~~~~~~~~~~~p~l~~R~~~~i~~~~~~ 337 (438)
.+++|+.+ +.+.+ -|.+++|+ ..+.|++++
T Consensus 132 ~~~fiL~t~~~~~i------l~TI~SRc-~~i~~~~ls 162 (162)
T PF13177_consen 132 NTYFILITNNPSKI------LPTIRSRC-QVIRFRPLS 162 (162)
T ss_dssp TEEEEEEES-GGGS-------HHHHTTS-EEEEE----
T ss_pred CEEEEEEECChHHC------hHHHHhhc-eEEecCCCC
Confidence 45555554 34443 67889998 888887764
No 295
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=9.6e-11 Score=120.18 Aligned_cols=176 Identities=19% Similarity=0.354 Sum_probs=122.6
Q ss_pred HHHHHHH-hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC
Q 013706 155 DELENEL-SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR 233 (438)
Q Consensus 155 ~~~~~~l-~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~ 233 (438)
-.+.+.+ +.++||+++...|-+.+.... .|.... .+...++|.||.|+|||-+|+++|..++- ....
T Consensus 554 ~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr-------~gl~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fg----se~~ 621 (898)
T KOG1051|consen 554 KKLEERLHERVIGQDEAVAAIAAAIRRSR-------AGLKDP-NPDAWFLFLGPDGVGKTELAKALAEYVFG----SEEN 621 (898)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhhh-------cccCCC-CCCeEEEEECCCchhHHHHHHHHHHHHcC----Cccc
Confidence 3344444 468899998888887654332 222222 36677999999999999999999998853 2347
Q ss_pred EEEeeccc------ccc---cccccchH-HHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC---
Q 013706 234 VTEVQRTD------LVG---EFVGHTGP-KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--- 300 (438)
Q Consensus 234 ~~~~~~~~------~~~---~~~g~~~~-~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~--- 300 (438)
++.++.++ +.+ .|+|+++. .+.+.++.-..+||+|||||+..+ .+++.|++.+|+|
T Consensus 622 ~IriDmse~~evskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~-----------~v~n~llq~lD~Grlt 690 (898)
T KOG1051|consen 622 FIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHP-----------DVLNILLQLLDRGRLT 690 (898)
T ss_pred eEEechhhhhhhhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCH-----------HHHHHHHHHHhcCccc
Confidence 78887774 323 37777554 777777777889999999999987 5669999999863
Q ss_pred ----------CEEEEEecCChhHH-----------------------------HHh------hhCcCccCCCCcceeCCC
Q 013706 301 ----------KVVVIFAGYSEPMK-----------------------------RVI------ASNEGFCRRVTKFFHFND 335 (438)
Q Consensus 301 ----------~v~vi~~~~~~~~~-----------------------------~~~------~~~p~l~~R~~~~i~~~~ 335 (438)
+.+||+|.+...-. ... ...|.+..|.+..+.|.+
T Consensus 691 Ds~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~ 770 (898)
T KOG1051|consen 691 DSHGREVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLP 770 (898)
T ss_pred cCCCcEeeccceEEEEecccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhcccceeeeecc
Confidence 46788875321110 000 011455667888888999
Q ss_pred CCHHHHHHHHHHHHhccc
Q 013706 336 FNSEELAKILHIKMNNQT 353 (438)
Q Consensus 336 ~~~~e~~~il~~~l~~~~ 353 (438)
++.++..+|....+.+..
T Consensus 771 l~~~~~~~i~~~~~~e~~ 788 (898)
T KOG1051|consen 771 LDRDELIEIVNKQLTEIE 788 (898)
T ss_pred cchhhHhhhhhhHHHHHH
Confidence 999888888887776553
No 296
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.19 E-value=9.4e-11 Score=110.10 Aligned_cols=132 Identities=13% Similarity=0.127 Sum_probs=88.3
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC-----------------EEEeecccccccccccchHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR-----------------VTEVQRTDLVGEFVGHTGPKTRRRIKE 260 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~ 260 (438)
.+..+||+||+|+|||++|+.+|+.+.........+ +..+.+..- ++. -.-..++.+.+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~~--i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DKT--IKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CCC--CCHHHHHHHHHH
Confidence 345689999999999999999999886432211111 222211100 000 122345555443
Q ss_pred c-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcce
Q 013706 261 A-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFF 331 (438)
Q Consensus 261 a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i 331 (438)
+ ...|++|||+|+|.. .+.|.||..+++ +..++|++|+.... + .|.+++|+ ..+
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~~-----------~aaNaLLK~LEEPp~~~~fiL~t~~~~~--l---l~TI~SRc-~~~ 160 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMNR-----------NAANALLKSLEEPSGDTVLLLISHQPSR--L---LPTIKSRC-QQQ 160 (328)
T ss_pred HhhccccCCCeEEEECChhhCCH-----------HHHHHHHHHHhCCCCCeEEEEEECChhh--C---cHHHHhhc-eee
Confidence 3 236999999999987 445999999998 55666666544322 2 78999998 779
Q ss_pred eCCCCCHHHHHHHHHHHH
Q 013706 332 HFNDFNSEELAKILHIKM 349 (438)
Q Consensus 332 ~~~~~~~~e~~~il~~~l 349 (438)
.|++|+.++..+.+....
T Consensus 161 ~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 161 ACPLPSNEESLQWLQQAL 178 (328)
T ss_pred eCCCcCHHHHHHHHHHhc
Confidence 999999999988887643
No 297
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.17 E-value=1e-10 Score=104.88 Aligned_cols=92 Identities=34% Similarity=0.420 Sum_probs=86.1
Q ss_pred CCCCcHHHHHHHcCC-----HHHHHHHhcCCCCCCc---ccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCC
Q 013706 2 QMAQTPLHVSAGYNK-----AEIVKSLLEWPGNDKV---ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANN 73 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~-----~~~v~~Ll~~~~~~~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~ 73 (438)
.+|.||||+|+..|+ .++++.|++ .++ ..+..|..|+||||+|+..|+.+++++|++.|++++..+..
T Consensus 104 ~~g~t~l~~a~~~~~~~~~~~~~~~~ll~----~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~ 179 (235)
T COG0666 104 ADGDTPLHLAALNGNPPEGNIEVAKLLLE----AGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSY 179 (235)
T ss_pred CCCCcHHHHHHhcCCcccchHHHHHHHHH----cCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccC
Confidence 479999999999999 999999999 566 67777999999999999999999999999999999999999
Q ss_pred CCcHHHHHhhcccccCcHHHHHHHHhCC
Q 013706 74 GMTPLHLSVWYSIRSEDYATVKTLLEYN 101 (438)
Q Consensus 74 g~t~L~~A~~~~~~~~~~~~~~~Ll~~g 101 (438)
|.|++++|+ ..++..++..++..+
T Consensus 180 g~t~l~~a~----~~~~~~~~~~l~~~~ 203 (235)
T COG0666 180 GVTALDPAA----KNGRIELVKLLLDKG 203 (235)
T ss_pred CCcchhhhc----ccchHHHHHHHHhcC
Confidence 999999999 889999999999876
No 298
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.17 E-value=5.2e-10 Score=104.65 Aligned_cols=158 Identities=22% Similarity=0.239 Sum_probs=105.5
Q ss_pred HhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecc
Q 013706 161 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 240 (438)
Q Consensus 161 l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 240 (438)
|.-++|++..+..|--- .+ ...-.++|+.|+.|||||+++|+|+..|....... ++-+.+++.
T Consensus 16 f~aivGqd~lk~aL~l~--av--------------~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~-gc~f~cdP~ 78 (423)
T COG1239 16 FTAIVGQDPLKLALGLN--AV--------------DPQIGGALIAGEKGTAKSTLARALADLLPEIEVVI-GCPFNCDPD 78 (423)
T ss_pred hhhhcCchHHHHHHhhh--hc--------------ccccceeEEecCCCccHHHHHHHHHHhCCccceec-CCCCCCCCC
Confidence 56778998888776532 11 23456899999999999999999999884322222 222233332
Q ss_pred cc----------------------------------cccccccc--hHHHH--------HHHHHccCcEEEEeCcccccC
Q 013706 241 DL----------------------------------VGEFVGHT--GPKTR--------RRIKEAEGGILFVDEAYRLIP 276 (438)
Q Consensus 241 ~~----------------------------------~~~~~g~~--~~~~~--------~~~~~a~~~il~iDEid~l~~ 276 (438)
+- ....+|.. ++.++ .++.+|..||||+||+..|..
T Consensus 79 ~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d 158 (423)
T COG1239 79 DPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDD 158 (423)
T ss_pred ChhhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccH
Confidence 21 11123321 11111 245667789999999988864
Q ss_pred CCCCCCchhHHHHHHHHHhhccCC---------------CEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCC-HHH
Q 013706 277 MQKADDKDYGIEALEEIMSVMDGG---------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFN-SEE 340 (438)
Q Consensus 277 ~~~~~~~~~~~~~~~~ll~~~~~~---------------~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~-~~e 340 (438)
.+++.||..+..+ ++++|++.|+..- .+ -|.|++||...+....|+ .++
T Consensus 159 -----------~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeG-eL---rpqLlDRfg~~v~~~~~~~~~~ 223 (423)
T COG1239 159 -----------HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEG-EL---RPQLLDRFGLEVDTHYPLDLEE 223 (423)
T ss_pred -----------HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCcccc-cc---chhhHhhhcceeeccCCCCHHH
Confidence 6778899888763 4577777666532 33 788999999999987665 588
Q ss_pred HHHHHHHHHh
Q 013706 341 LAKILHIKMN 350 (438)
Q Consensus 341 ~~~il~~~l~ 350 (438)
+.+|+++.+.
T Consensus 224 rv~Ii~r~~~ 233 (423)
T COG1239 224 RVEIIRRRLA 233 (423)
T ss_pred HHHHHHHHHH
Confidence 8899887765
No 299
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.14 E-value=2.2e-10 Score=92.17 Aligned_cols=94 Identities=48% Similarity=0.717 Sum_probs=85.8
Q ss_pred ccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCcccc
Q 013706 37 QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLD 116 (438)
Q Consensus 37 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~ 116 (438)
.|..|+||||+|+..++.+++++|++.+.+.+..+..|.||||+|+ ..++.++++.|+..+++++..+..+.||+
T Consensus 3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~----~~~~~~~~~~ll~~~~~~~~~~~~~~~~l- 77 (126)
T cd00204 3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAA----KNGHLEIVKLLLEKGADVNARDKDGNTPL- 77 (126)
T ss_pred cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHH----HcCCHHHHHHHHHcCCCccccCCCCCCHH-
Confidence 4678999999999999999999999999999999999999999999 78889999999999999999999999999
Q ss_pred ccccCCCchhHHHHHHhcc
Q 013706 117 HLSNGPGSAKLRELLLWHS 135 (438)
Q Consensus 117 ~~a~~~~~~~~~~lL~~~~ 135 (438)
+.+...+..+++++|...+
T Consensus 78 ~~a~~~~~~~~~~~L~~~~ 96 (126)
T cd00204 78 HLAARNGNLDVVKLLLKHG 96 (126)
T ss_pred HHHHHcCcHHHHHHHHHcC
Confidence 6666677889999998766
No 300
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=99.13 E-value=2.6e-11 Score=122.73 Aligned_cols=128 Identities=27% Similarity=0.274 Sum_probs=118.1
Q ss_pred CcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccc-cCCCCcHHHHHhh
Q 013706 5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAK-ANNGMTPLHLSVW 83 (438)
Q Consensus 5 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A~~ 83 (438)
.|+|-.||..||.+.|.+|+. .|+++..+|+.|.+||.+|+..||..+|+.|+.+.+++..+ |+.+.|+|.+||
T Consensus 758 ~t~LT~acaggh~e~vellv~----rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlac- 832 (2131)
T KOG4369|consen 758 KTNLTSACAGGHREEVELLVV----RGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLAC- 832 (2131)
T ss_pred cccccccccCccHHHHHHHHH----hcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEec-
Confidence 589999999999999999998 79999999999999999999999999999999999999885 889999999999
Q ss_pred cccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706 84 YSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 141 (438)
Q Consensus 84 ~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~ 141 (438)
..|+++++++||.+|++-..++....||| .++..+++.+++.+|+..|.....+
T Consensus 833 ---sggr~~vvelLl~~gankehrnvsDytPl-sla~Sggy~~iI~~llS~GseInSr 886 (2131)
T KOG4369|consen 833 ---SGGRTRVVELLLNAGANKEHRNVSDYTPL-SLARSGGYTKIIHALLSSGSEINSR 886 (2131)
T ss_pred ---CCCcchHHHHHHHhhccccccchhhcCch-hhhcCcchHHHHHHHhhcccccccc
Confidence 99999999999999999999999999999 6666688999999999988654443
No 301
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.13 E-value=1.4e-09 Score=96.12 Aligned_cols=92 Identities=21% Similarity=0.305 Sum_probs=63.0
Q ss_pred CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-CEEEEEecCCh--------hHHHHhhhCcCccCCCCcceeC
Q 013706 263 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-KVVVIFAGYSE--------PMKRVIASNEGFCRRVTKFFHF 333 (438)
Q Consensus 263 ~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-~v~vi~~~~~~--------~~~~~~~~~p~l~~R~~~~i~~ 333 (438)
+|||||||+|.|-- +....|-+.+++. .-+||+|+++- ++..-.-..|.|++|+ .+|..
T Consensus 297 PGVLFIDEVhMLDi-----------EcFTyL~kalES~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl-~Iirt 364 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDI-----------ECFTYLHKALESPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRL-LIIRT 364 (456)
T ss_pred CcceEeeehhhhhh-----------HHHHHHHHHhcCCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhhe-eEEee
Confidence 59999999998853 5667777888872 23444554321 1111111136789998 88999
Q ss_pred CCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHH
Q 013706 334 NDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 377 (438)
Q Consensus 334 ~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (438)
-+|+.++..+|++.....+. ..++++++..+..
T Consensus 365 ~~y~~~e~r~Ii~~Ra~~E~-----------l~~~e~a~~~l~~ 397 (456)
T KOG1942|consen 365 LPYDEEEIRQIIKIRAQVEG-----------LQVEEEALDLLAE 397 (456)
T ss_pred ccCCHHHHHHHHHHHHhhhc-----------ceecHHHHHHHHh
Confidence 99999999999998887653 3456677777766
No 302
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=99.13 E-value=1.6e-10 Score=109.20 Aligned_cols=209 Identities=17% Similarity=0.222 Sum_probs=119.3
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc-----cccccc---ccchHHH-HHHHHHccCcEEEE
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD-----LVGEFV---GHTGPKT-RRRIKEAEGGILFV 268 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~-----~~~~~~---g~~~~~~-~~~~~~a~~~il~i 268 (438)
..-|+||.|.||||||.+.+.+++.... -+.+++.. +..... ...+..+ ...+-.|.+||++|
T Consensus 56 ~~ihiLlvGdpg~gKS~ll~~~~~~~pr--------~v~~~g~~~s~~gLta~~~~d~~~~~~~leaGalvlad~GiccI 127 (331)
T PF00493_consen 56 GNIHILLVGDPGTGKSQLLKYVAKLAPR--------SVYTSGKGSSAAGLTASVSRDPVTGEWVLEAGALVLADGGICCI 127 (331)
T ss_dssp -S--EEEECSCHHCHHHHHHCCCCT-SS--------EEEEECCGSTCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEE
T ss_pred cccceeeccchhhhHHHHHHHHHhhCCc--------eEEECCCCcccCCccceeccccccceeEEeCCchhcccCceeee
Confidence 4569999999999999999988654321 12222211 111100 0111111 24677889999999
Q ss_pred eCcccccCCCCCCCchhHHHHHHHHHhhccCCC---------------EEEEEecCChhHH--------HHhhhCcCccC
Q 013706 269 DEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPMK--------RVIASNEGFCR 325 (438)
Q Consensus 269 DEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~---------------v~vi~~~~~~~~~--------~~~~~~p~l~~ 325 (438)
||+|++... ....|.+.|+.+. ..|+++.++..-. .-+...++|++
T Consensus 128 De~dk~~~~-----------~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS 196 (331)
T PF00493_consen 128 DEFDKMKED-----------DRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS 196 (331)
T ss_dssp CTTTT--CH-----------HHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC
T ss_pred cccccccch-----------HHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh
Confidence 999999763 3488999998632 3666666544311 11123579999
Q ss_pred CCCcceeC-CCCCHHHHHHHHHHHHhcccccc--------------c--------cc-cccccccccHHHHHHHHHHHhh
Q 013706 326 RVTKFFHF-NDFNSEELAKILHIKMNNQTEDS--------------L--------LY-GFKLHSSCSMDAIAALIEKETT 381 (438)
Q Consensus 326 R~~~~i~~-~~~~~~e~~~il~~~l~~~~~~~--------------~--------~~-~~~~~~~~~~~~~~~~~~~~~~ 381 (438)
|||.++.+ +.++.+.=..+.++.+....... . .+ +..+.|.+++++...+..+|..
T Consensus 197 RFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~ 276 (331)
T PF00493_consen 197 RFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIHPVLSEEAKELIINYYVE 276 (331)
T ss_dssp C-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHHHHCC
T ss_pred hcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHH
Confidence 99988775 66666555566665555543221 0 01 1146677888887777777652
Q ss_pred Hhh-------hccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706 382 EKQ-------RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 434 (438)
Q Consensus 382 ~~~-------~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~ 434 (438)
-.. ..+...|.+..++.-+...|..|+. ..|+.+|+..|+..+.
T Consensus 277 lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr---------~~V~~~Dv~~Ai~L~~ 327 (331)
T PF00493_consen 277 LRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLR---------DEVTEEDVEEAIRLFE 327 (331)
T ss_dssp CCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTS---------SECSHHHHHHHHHHHH
T ss_pred hcccccccccccccchhhHHHHHHHHHHHHHHhcc---------CceeHHHHHHHHHHHH
Confidence 211 1345678999998888777755554 5789999999998875
No 303
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.12 E-value=5.1e-10 Score=112.36 Aligned_cols=195 Identities=17% Similarity=0.181 Sum_probs=126.9
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccc--hH--------HHHHHHHHccCcEEEE
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHT--GP--------KTRRRIKEAEGGILFV 268 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~--------~~~~~~~~a~~~il~i 268 (438)
-.++++.|++||||++++++++..+.. ..+|+.+..+--....+|-. +. .....+.+|.+|||||
T Consensus 25 ~gGv~i~g~~G~~ks~~~r~l~~llp~-----~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~l 99 (584)
T PRK13406 25 LGGVVLRARAGPVRDRWLAALRALLPA-----GTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVL 99 (584)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhcCC-----CCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEe
Confidence 368999999999999999999987743 23677666665555555542 11 1234677888999999
Q ss_pred eCcccccCCCCCCCchhHHHHHHHHHhhccCCCE---------------EEEEecCChhHHHHhhhCcCccCCCCcceeC
Q 013706 269 DEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV---------------VVIFAGYSEPMKRVIASNEGFCRRVTKFFHF 333 (438)
Q Consensus 269 DEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v---------------~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~ 333 (438)
||+..+.+ .+++.|++.|+++.+ .+|++ .++........+++++||+..+.+
T Consensus 100 De~n~~~~-----------~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat--~~~~~~~~~L~~~lLDRf~l~v~v 166 (584)
T PRK13406 100 AMAERLEP-----------GTAARLAAALDTGEVRLERDGLALRLPARFGLVAL--DEGAEEDERAPAALADRLAFHLDL 166 (584)
T ss_pred cCcccCCH-----------HHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEec--CCChhcccCCCHHhHhheEEEEEc
Confidence 99988876 677999999998643 44554 322222223378899999999999
Q ss_pred CCCCHHHHH-------HHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccc-cccchHHHHHHHHHHhh
Q 013706 334 NDFNSEELA-------KILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM-NGGLVDPMLVNARENLD 405 (438)
Q Consensus 334 ~~~~~~e~~-------~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-n~~~l~~~~~~a~~~~~ 405 (438)
+.++..+.. +|.... . .+. +..++++.+..++.-+.. ... ..|.-..++.-|.-.|+
T Consensus 167 ~~~~~~~~~~~~~~~~~I~~AR-~---------rl~-~v~v~~~~l~~i~~~~~~----~gv~S~Ra~i~llraARa~Aa 231 (584)
T PRK13406 167 DGLALRDAREIPIDADDIAAAR-A---------RLP-AVGPPPEAIAALCAAAAA----LGIASLRAPLLALRAARAAAA 231 (584)
T ss_pred CCCChHHhcccCCCHHHHHHHH-H---------HHc-cCCCCHHHHHHHHHHHHH----hCCCCcCHHHHHHHHHHHHHH
Confidence 999876542 122111 0 011 245666777666643321 111 33555555555555552
Q ss_pred ccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706 406 LRLSFDCLDTDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 406 ~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 435 (438)
-++...|+.+|+.+|+..+.+
T Consensus 232 ---------L~Gr~~V~~~dv~~Aa~lvL~ 252 (584)
T PRK13406 232 ---------LAGRTAVEEEDLALAARLVLA 252 (584)
T ss_pred ---------HcCCCCCCHHHHHHHHHHHHH
Confidence 235578999999999887654
No 304
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.10 E-value=1.1e-10 Score=109.75 Aligned_cols=93 Identities=26% Similarity=0.157 Sum_probs=79.0
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccc-cCCCCcHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAK-ANNGMTPLHL 80 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~ 80 (438)
..|.|+||-|+-.||.+||++|++ .|+|+|+.|.+||||||+|+..++..+++.|++.|+.+-+. -.++.|+.--
T Consensus 581 dEGITaLHNAiCaghyeIVkFLi~----~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eK 656 (752)
T KOG0515|consen 581 DEGITALHNAICAGHYEIVKFLIE----FGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEK 656 (752)
T ss_pred ccchhHHhhhhhcchhHHHHHHHh----cCCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhh
Confidence 368999999999999999999999 79999999999999999999999999999999999887553 4567787654
Q ss_pred HhhcccccCcHHHHHHHHhC
Q 013706 81 SVWYSIRSEDYATVKTLLEY 100 (438)
Q Consensus 81 A~~~~~~~~~~~~~~~Ll~~ 100 (438)
.-.+ ..|...|..+|...
T Consensus 657 Cee~--eeGY~~CsqyL~~v 674 (752)
T KOG0515|consen 657 CEEM--EEGYDQCSQYLYGV 674 (752)
T ss_pred cchh--hhhHHHHHHHHHHH
Confidence 3332 56778888888743
No 305
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.09 E-value=3.2e-10 Score=93.64 Aligned_cols=127 Identities=22% Similarity=0.232 Sum_probs=72.2
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc--------------ccccchHHHHHHHHHccC-
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE--------------FVGHTGPKTRRRIKEAEG- 263 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~--------------~~g~~~~~~~~~~~~a~~- 263 (438)
+.+++|+||||||||++++.++..+.... ..++.+++...... ............+..++.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG----GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKL 77 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC----CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhc
Confidence 46799999999999999999999776532 24566666543321 112233445555555543
Q ss_pred --cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCC--hhHHHHhhhCcCccCCCCcceeCCCC
Q 013706 264 --GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS--EPMKRVIASNEGFCRRVTKFFHFNDF 336 (438)
Q Consensus 264 --~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~--~~~~~~~~~~p~l~~R~~~~i~~~~~ 336 (438)
.+|||||++.+....+......... ..............+|++++. ... ...+..|++..+.++.+
T Consensus 78 ~~~viiiDei~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 78 KPDVLILDEITSLLDAEQEALLLLLEE-LRLLLLLKSEKNLTVILTTNDEKDLG------PALLRRRFDRRIVLLLI 147 (148)
T ss_pred CCCEEEEECCcccCCHHHHHHHHhhhh-hHHHHHHHhcCCCEEEEEeCCCccCc------hhhhhhccceEEEecCC
Confidence 9999999999987443100000000 001122223355677777663 121 23344477777766543
No 306
>PRK08116 hypothetical protein; Validated
Probab=99.06 E-value=3.1e-09 Score=97.27 Aligned_cols=129 Identities=16% Similarity=0.129 Sum_probs=72.4
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccccc----ccchHHHHHHHHHc-cCcEEEEeCccc
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFV----GHTGPKTRRRIKEA-EGGILFVDEAYR 273 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~a-~~~il~iDEid~ 273 (438)
..+++|+||||||||.||.++++.+...+ .+++.++.++++..+. +........+++.. ...+|+|||++.
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~----~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~ 189 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKG----VPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGA 189 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcC----CeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccC
Confidence 35799999999999999999999986543 2667777776655432 11111222344433 347999999964
Q ss_pred ccCCCCCCCchhHHHHHHHHHhh-ccCCCEEEEEecCChhHHHHhhhCcCccCCC---CcceeCCCCCH
Q 013706 274 LIPMQKADDKDYGIEALEEIMSV-MDGGKVVVIFAGYSEPMKRVIASNEGFCRRV---TKFFHFNDFNS 338 (438)
Q Consensus 274 l~~~~~~~~~~~~~~~~~~ll~~-~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~---~~~i~~~~~~~ 338 (438)
-.. ++.....+..++.. ++.+.. +|++|+..+-+..-..++.+.+|+ ...|.|+.++.
T Consensus 190 e~~------t~~~~~~l~~iin~r~~~~~~-~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 190 ERD------TEWAREKVYNIIDSRYRKGLP-TIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred CCC------CHHHHHHHHHHHHHHHHCCCC-EEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 321 22222222222222 223444 444444333221111256677775 45567766664
No 307
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.06 E-value=3.9e-10 Score=116.54 Aligned_cols=158 Identities=28% Similarity=0.391 Sum_probs=111.3
Q ss_pred hHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCC
Q 013706 43 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 122 (438)
Q Consensus 43 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~ 122 (438)
+.||.|+..|+.+++++|++.|+++|.+|..|+||||+|| ..|+.+++++|+++|++++..|.+|+||| |.|...
T Consensus 84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa----~~g~~eiv~~LL~~Gadvn~~d~~G~TpL-h~A~~~ 158 (664)
T PTZ00322 84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIAC----ANGHVQVVRVLLEFGADPTLLDKDGKTPL-ELAEEN 158 (664)
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHH----HCCCHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHC
Confidence 3588999999999999999999999999999999999999 88999999999999999999999999999 666668
Q ss_pred CchhHHHHHHhccchHHHHHHHHHhhhhhhhHHHHHHHHhhhcChHHHH--HHHHHHHHHhhhHHHHHhc-CCCCCCCCC
Q 013706 123 GSAKLRELLLWHSEEQRKRRALEACSETKAKMDELENELSNIVGLHELK--IQLRKWAKGMLLDERRKAL-GLKVGARRP 199 (438)
Q Consensus 123 ~~~~~~~lL~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~i~G~~~~~--~~l~~~~~~~~~~~~~~~~-~~~~~~~~~ 199 (438)
++.+++++|+.+........+. . . ...+ .|..... ..+.. ..+.. .........
T Consensus 159 g~~~iv~~Ll~~~~~~~~~ga~---~----~----~~~~---~g~~~~~~~~~~~~---------~~~d~~~~p~p~~~~ 215 (664)
T PTZ00322 159 GFREVVQLLSRHSQCHFELGAN---A----K----PDSF---TGKPPSLEDSPISS---------HHPDFSAVPQPMMGS 215 (664)
T ss_pred CcHHHHHHHHhCCCcccccCCC---C----C----cccc---CCCCccchhhhhhh---------ccccccccCcccccc
Confidence 8899999998773221100000 0 0 0000 0100000 00000 00000 000011123
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYMVGI 228 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~~~~ 228 (438)
..+++.|-||+|||++|+.|++.+...++
T Consensus 216 ~~~~~vglp~~GKStia~~L~~~l~~~~~ 244 (664)
T PTZ00322 216 LIVIMVGLPGRGKTYVARQIQRYFQWNGL 244 (664)
T ss_pred eeEEecccCCCChhHHHHHHHHHHHhcCC
Confidence 45889999999999999999999987655
No 308
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.05 E-value=2.5e-09 Score=99.58 Aligned_cols=128 Identities=16% Similarity=0.142 Sum_probs=82.9
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC--------------CEEEeeccccccccccc------chHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD--------------RVTEVQRTDLVGEFVGH------TGPKTRRRI 258 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~g~------~~~~~~~~~ 258 (438)
+..+||+||+|+||+++|.++|+.+........+ .+..+.. ....-|. .-..++++.
T Consensus 26 ~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~---~p~~~~~k~~~~I~idqIR~l~ 102 (319)
T PRK08769 26 GHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSF---IPNRTGDKLRTEIVIEQVREIS 102 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEec---CCCcccccccccccHHHHHHHH
Confidence 3458999999999999999999988643211111 1111100 0000111 122344444
Q ss_pred HHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecC-ChhHHHHhhhCcCccCCCC
Q 013706 259 KEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGY-SEPMKRVIASNEGFCRRVT 328 (438)
Q Consensus 259 ~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~-~~~~~~~~~~~p~l~~R~~ 328 (438)
+.. ...|++||++|.|.. .+.|.||..+|+ ...++|+.++ ...+ -|.+++|+
T Consensus 103 ~~~~~~p~~g~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEPp~~~~fiL~~~~~~~l------LpTIrSRC- 164 (319)
T PRK08769 103 QKLALTPQYGIAQVVIVDPADAINR-----------AACNALLKTLEEPSPGRYLWLISAQPARL------PATIRSRC- 164 (319)
T ss_pred HHHhhCcccCCcEEEEeccHhhhCH-----------HHHHHHHHHhhCCCCCCeEEEEECChhhC------chHHHhhh-
Confidence 432 226999999999986 445999999998 3454555433 3332 68899998
Q ss_pred cceeCCCCCHHHHHHHHHH
Q 013706 329 KFFHFNDFNSEELAKILHI 347 (438)
Q Consensus 329 ~~i~~~~~~~~e~~~il~~ 347 (438)
..+.|++|+.++..+.+..
T Consensus 165 q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 165 QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred eEeeCCCcCHHHHHHHHHH
Confidence 8999999999988877764
No 309
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.04 E-value=6e-10 Score=104.59 Aligned_cols=132 Identities=17% Similarity=0.158 Sum_probs=86.7
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcC-CCC-----------------EEEeecccccc--------------c
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILP-TDR-----------------VTEVQRTDLVG--------------E 245 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~-~~~-----------------~~~~~~~~~~~--------------~ 245 (438)
-+..+||+||+|+||+++|+.+|+.+....... ..+ +..+.+..... .
T Consensus 20 l~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~ 99 (342)
T PRK06964 20 LPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADAD 99 (342)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhh
Confidence 456789999999999999999999886533211 111 22221110000 0
Q ss_pred ccc---------cchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEe
Q 013706 246 FVG---------HTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFA 307 (438)
Q Consensus 246 ~~g---------~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~ 307 (438)
--| -.-..++.+.+.. ...|++||++|.|.. .+.|.||..+|+ ..+++|+.
T Consensus 100 ~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEPp~~t~fiL~ 168 (342)
T PRK06964 100 EGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV-----------AAANALLKTLEEPPPGTVFLLV 168 (342)
T ss_pred cccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH-----------HHHHHHHHHhcCCCcCcEEEEE
Confidence 000 0123445444432 236999999999986 444999999998 45555555
Q ss_pred cCC-hhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHH
Q 013706 308 GYS-EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHI 347 (438)
Q Consensus 308 ~~~-~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~ 347 (438)
|+. +.+ .|.+++|+ ..+.|++|+.++..+.+..
T Consensus 169 t~~~~~L------LpTI~SRc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 169 SARIDRL------LPTILSRC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred ECChhhC------cHHHHhcC-EEEEecCCCHHHHHHHHHH
Confidence 433 333 78899998 8999999999999888865
No 310
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=1.1e-09 Score=102.19 Aligned_cols=133 Identities=11% Similarity=0.134 Sum_probs=86.2
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee---------cccccccc--ccc--chHHHHHHHHHc----
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ---------RTDLVGEF--VGH--TGPKTRRRIKEA---- 261 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~---------~~~~~~~~--~g~--~~~~~~~~~~~a---- 261 (438)
+..+||+||+|+||+++|+.+|+.+.........++-.+. -+++..-. -|. .-..++++.+..
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~ 103 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHA 103 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhcc
Confidence 4457899999999999999999988643321111211110 01111000 011 233455544432
Q ss_pred ---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCC
Q 013706 262 ---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDF 336 (438)
Q Consensus 262 ---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~ 336 (438)
...|++||++|+|.. .+.|.||..+|+ ..+++|++++... .+ .|.+++|+ ..+.|++|
T Consensus 104 ~~g~~KV~iI~~a~~m~~-----------~AaNaLLKtLEEPp~~~~fiL~t~~~~--~l---lpTI~SRC-~~~~~~~~ 166 (325)
T PRK06871 104 QQGGNKVVYIQGAERLTE-----------AAANALLKTLEEPRPNTYFLLQADLSA--AL---LPTIYSRC-QTWLIHPP 166 (325)
T ss_pred ccCCceEEEEechhhhCH-----------HHHHHHHHHhcCCCCCeEEEEEECChH--hC---chHHHhhc-eEEeCCCC
Confidence 237999999999986 444999999998 4555555543322 22 78899998 89999999
Q ss_pred CHHHHHHHHHHH
Q 013706 337 NSEELAKILHIK 348 (438)
Q Consensus 337 ~~~e~~~il~~~ 348 (438)
+.++..+.+...
T Consensus 167 ~~~~~~~~L~~~ 178 (325)
T PRK06871 167 EEQQALDWLQAQ 178 (325)
T ss_pred CHHHHHHHHHHH
Confidence 999988888764
No 311
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=98.97 E-value=2.1e-09 Score=94.12 Aligned_cols=89 Identities=22% Similarity=0.194 Sum_probs=80.3
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccc-cCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ-NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHL 80 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 80 (438)
..|.+||..|+..|+.++|+.|++ .|+|+|.. +..+.||||+|+..|+.++.++|++.|+.+...|.-|+|+-..
T Consensus 43 ~sGMs~LahAaykGnl~~v~lll~----~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqm 118 (396)
T KOG1710|consen 43 PSGMSVLAHAAYKGNLTLVELLLE----LGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQM 118 (396)
T ss_pred CCcccHHHHHHhcCcHHHHHHHHH----hCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHH
Confidence 479999999999999999999999 78888864 4679999999999999999999999999999999999999999
Q ss_pred HhhcccccCcHHHHHHHH
Q 013706 81 SVWYSIRSEDYATVKTLL 98 (438)
Q Consensus 81 A~~~~~~~~~~~~~~~Ll 98 (438)
|+ --|+.+++.++-
T Consensus 119 AA----FVG~H~CV~iIN 132 (396)
T KOG1710|consen 119 AA----FVGHHECVAIIN 132 (396)
T ss_pred HH----HhcchHHHHHHh
Confidence 98 568888887653
No 312
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.97 E-value=2.5e-08 Score=88.63 Aligned_cols=134 Identities=18% Similarity=0.229 Sum_probs=81.7
Q ss_pred CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-CCEEEEEecCChhHH-------HHhhhCcCccCCCCcceeCC
Q 013706 263 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMK-------RVIASNEGFCRRVTKFFHFN 334 (438)
Q Consensus 263 ~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~v~vi~~~~~~~~~-------~~~~~~p~l~~R~~~~i~~~ 334 (438)
+|||||||+|.|-- +..+.|-+.+++ -..++|++||+--.. ...-.+-.|++|+ .+|.-.
T Consensus 289 pGVLFIDEvHMLDI-----------EcFsFlNrAlE~d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~-lII~t~ 356 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDI-----------ECFSFLNRALENDMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLDRM-LIISTQ 356 (454)
T ss_pred cceEEEeeehhhhh-----------HHHHHHHHHhhhccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhh-heeecc
Confidence 49999999988853 555677777776 233444444211100 0000023467787 889999
Q ss_pred CCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCC
Q 013706 335 DFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLD 414 (438)
Q Consensus 335 ~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~ 414 (438)
+|+.++...||+..+.++. ...+++++..+..--. ....|-..+++-.|...+..|
T Consensus 357 py~~~d~~~IL~iRc~EEd-----------v~m~~~A~d~Lt~i~~------~tsLRYai~Lit~a~~~~~kr------- 412 (454)
T KOG2680|consen 357 PYTEEDIKKILRIRCQEED-----------VEMNPDALDLLTKIGE------ATSLRYAIHLITAASLVCLKR------- 412 (454)
T ss_pred cCcHHHHHHHHHhhhhhhc-----------cccCHHHHHHHHHhhh------hhhHHHHHHHHHHHHHHHHHh-------
Confidence 9999999999999988753 3456677777665332 222344556665555544333
Q ss_pred hhhhhhccHHHHHHHHHHHH
Q 013706 415 TDELRTITLEDLEAGLKLLL 434 (438)
Q Consensus 415 ~~~~~~i~~~d~~~a~~~~~ 434 (438)
.-..+..+|+..++..+.
T Consensus 413 --k~~~v~~~di~r~y~LFl 430 (454)
T KOG2680|consen 413 --KGKVVEVDDIERVYRLFL 430 (454)
T ss_pred --cCceeehhHHHHHHHHHh
Confidence 124566777777776653
No 313
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.95 E-value=2e-09 Score=108.14 Aligned_cols=238 Identities=19% Similarity=0.272 Sum_probs=139.1
Q ss_pred HhhhcChHHHHHHHHH-HHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706 161 LSNIVGLHELKIQLRK-WAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 239 (438)
Q Consensus 161 l~~i~G~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 239 (438)
.-.+.|.+.+|+.|.= +...+. +........+..-|+||.|.||||||.+-+.+++.+.. + -+..-.+
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv~-----k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr-~-----vytsgkg 353 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGVK-----KNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPR-G-----VYTSGKG 353 (682)
T ss_pred cccccCcHHHHHHHHHHhcCCCc-----ccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCc-e-----EEEcccc
Confidence 3456788887776542 211110 00000011223468999999999999999999986632 1 1111111
Q ss_pred cc---c---------cccccccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCE-----
Q 013706 240 TD---L---------VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV----- 302 (438)
Q Consensus 240 ~~---~---------~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v----- 302 (438)
++ + .++|.=+ ..++-.|.+||..|||+|++..... +.+.+.|+...|
T Consensus 354 ss~~GLTAav~rd~~tge~~Le-----aGALVlAD~Gv~cIDEfdKm~~~dr-----------~aihEaMEQQtIsIaKA 417 (682)
T COG1241 354 SSAAGLTAAVVRDKVTGEWVLE-----AGALVLADGGVCCIDEFDKMNEEDR-----------VAIHEAMEQQTISIAKA 417 (682)
T ss_pred ccccCceeEEEEccCCCeEEEe-----CCEEEEecCCEEEEEeccCCChHHH-----------HHHHHHHHhcEeeeccc
Confidence 11 1 1112111 1344567889999999999976433 788888876332
Q ss_pred ----------EEEEecCChh--------HHHHhhhCcCccCCCCcceeC-CCCCHHHHHHHHHHHHhccc----cc----
Q 013706 303 ----------VVIFAGYSEP--------MKRVIASNEGFCRRVTKFFHF-NDFNSEELAKILHIKMNNQT----ED---- 355 (438)
Q Consensus 303 ----------~vi~~~~~~~--------~~~~~~~~p~l~~R~~~~i~~-~~~~~~e~~~il~~~l~~~~----~~---- 355 (438)
-|++|.|+.. ...-+..+++|++|||..+-+ +.|+.+.=..+..+.+.... ..
T Consensus 418 GI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~ 497 (682)
T COG1241 418 GITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISL 497 (682)
T ss_pred ceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhcccccccccc
Confidence 2233332211 122233347899999887765 55665444444444443331 00
Q ss_pred -------------ccc---ccc-cccccccHHHHHHHHHHHhhHhhh---------ccccccchHHHHHHHHHHhhcccc
Q 013706 356 -------------SLL---YGF-KLHSSCSMDAIAALIEKETTEKQR---------REMNGGLVDPMLVNARENLDLRLS 409 (438)
Q Consensus 356 -------------~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------~~~n~~~l~~~~~~a~~~~~~r~~ 409 (438)
... |.. ...|.++.++.+.+...|..-.-. .+-..|.|..++.-+...|..|++
T Consensus 498 ~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS 577 (682)
T COG1241 498 DGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLS 577 (682)
T ss_pred ccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhcc
Confidence 011 222 255788999988888887632211 245578888888888777766666
Q ss_pred CCCCChhhhhhccHHHHHHHHHHHH
Q 013706 410 FDCLDTDELRTITLEDLEAGLKLLL 434 (438)
Q Consensus 410 ~~~~~~~~~~~i~~~d~~~a~~~~~ 434 (438)
..|+.+|+.+|++.+.
T Consensus 578 ---------~~V~~eD~~eAi~lv~ 593 (682)
T COG1241 578 ---------DVVEEEDVDEAIRLVD 593 (682)
T ss_pred ---------CCCCHHHHHHHHHHHH
Confidence 4688999999998876
No 314
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.94 E-value=1.7e-08 Score=95.19 Aligned_cols=204 Identities=16% Similarity=0.153 Sum_probs=120.6
Q ss_pred hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706 162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 241 (438)
Q Consensus 162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 241 (438)
..+.|.+.-...++++.... +....+..+.+.|.||||||..-..+-..+...+. ....+.+++.+
T Consensus 150 ~~l~gRe~e~~~v~~F~~~h------------le~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~--~~~~v~inc~s 215 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLH------------LELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSK--SPVTVYINCTS 215 (529)
T ss_pred CCccchHHHHHHHHHHHHhh------------hhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcc--cceeEEEeecc
Confidence 45677777777777764433 23456778899999999999887765544432221 11336677664
Q ss_pred cc------c----c----cccc-chHHHHHHHHH----cc-CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhc--cC
Q 013706 242 LV------G----E----FVGH-TGPKTRRRIKE----AE-GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM--DG 299 (438)
Q Consensus 242 ~~------~----~----~~g~-~~~~~~~~~~~----a~-~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~--~~ 299 (438)
+. . . ..|. ++......|++ .. .-++++||+|.|..+.+ .++..|.++= -+
T Consensus 216 l~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~--------~vLy~lFewp~lp~ 287 (529)
T KOG2227|consen 216 LTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ--------TVLYTLFEWPKLPN 287 (529)
T ss_pred ccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc--------ceeeeehhcccCCc
Confidence 21 1 1 1221 22222333433 22 36899999999997666 3333333322 23
Q ss_pred CCEEEEE-ecCChhHHHHhhhCcCccCCC---CcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHH
Q 013706 300 GKVVVIF-AGYSEPMKRVIASNEGFCRRV---TKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAAL 375 (438)
Q Consensus 300 ~~v~vi~-~~~~~~~~~~~~~~p~l~~R~---~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (438)
.++++|+ |+.-+..+++ -|.|..|. +..+.|++|+.+++.+|+...+....- .. +-+.+++-.
T Consensus 288 sr~iLiGiANslDlTdR~---LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t---------~~-~~~~Aie~~ 354 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTDRF---LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEEST---------SI-FLNAAIELC 354 (529)
T ss_pred ceeeeeeehhhhhHHHHH---hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccc---------cc-cchHHHHHH
Confidence 4555555 4444444455 35555433 889999999999999999999988642 12 223456666
Q ss_pred HHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 376 IEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 376 ~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
+++..+ ..|+.|.+..++.+|++.+
T Consensus 355 ArKvaa----~SGDlRkaLdv~R~aiEI~ 379 (529)
T KOG2227|consen 355 ARKVAA----PSGDLRKALDVCRRAIEIA 379 (529)
T ss_pred HHHhcc----CchhHHHHHHHHHHHHHHH
Confidence 665542 1344566666666666654
No 315
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=1.8e-09 Score=101.35 Aligned_cols=132 Identities=19% Similarity=0.206 Sum_probs=83.9
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcC------------------CCCEEEeeccccccccccc-----chHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILP------------------TDRVTEVQRTDLVGEFVGH-----TGPKT 254 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~g~-----~~~~~ 254 (438)
-+..+||+||+|+|||++|+.+|+.+....... ...++.+.+..-. .--|. .-..+
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~i 98 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDAV 98 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHHH
Confidence 345689999999999999999999886422111 1223334332100 00010 22345
Q ss_pred HHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccC
Q 013706 255 RRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCR 325 (438)
Q Consensus 255 ~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~ 325 (438)
+.+.+.+ ...|++||+++.+.+.. .+.|+..+++ ...++|++|+... .+ .|.+++
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a-----------~naLLk~LEep~~~~~~Ilvth~~~--~l---l~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNLQA-----------ANSLLKVLEEPPPQVVFLLVSHAAD--KV---LPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCHHH-----------HHHHHHHHHhCcCCCEEEEEeCChH--hC---hHHHHH
Confidence 5555443 23799999999998743 3788888876 2354555544322 22 577888
Q ss_pred CCCcceeCCCCCHHHHHHHHHH
Q 013706 326 RVTKFFHFNDFNSEELAKILHI 347 (438)
Q Consensus 326 R~~~~i~~~~~~~~e~~~il~~ 347 (438)
|+ ..+.|++|+.++..+.+..
T Consensus 163 Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hh-hhhcCCCCCHHHHHHHHHh
Confidence 88 9999999999998877754
No 316
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=9.7e-09 Score=95.56 Aligned_cols=129 Identities=10% Similarity=0.154 Sum_probs=84.3
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC----------------CCEEEeecccccccccccchHHHHHHHHHc
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT----------------DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA 261 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a 261 (438)
-+..+||+||.|+||+++|+.+|+.+........ ..+..+.+.. .++.+ .-..++.+.+..
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~vdqiR~l~~~~ 100 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSI--TVEQIRQCNRLA 100 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcC--CHHHHHHHHHHH
Confidence 3456899999999999999999998864321100 1122222110 00111 122344443332
Q ss_pred -------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecC-ChhHHHHhhhCcCccCCCCcce
Q 013706 262 -------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGY-SEPMKRVIASNEGFCRRVTKFF 331 (438)
Q Consensus 262 -------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~-~~~~~~~~~~~p~l~~R~~~~i 331 (438)
...|++||++|.|.. .+.|.||..+|+ .++++|+.++ +..+ -|.+++|+ ..+
T Consensus 101 ~~~~~~~~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEPp~~t~fiL~t~~~~~l------LpTI~SRC-q~~ 162 (319)
T PRK06090 101 QESSQLNGYRLFVIEPADAMNE-----------SASNALLKTLEEPAPNCLFLLVTHNQKRL------LPTIVSRC-QQW 162 (319)
T ss_pred hhCcccCCceEEEecchhhhCH-----------HHHHHHHHHhcCCCCCeEEEEEECChhhC------hHHHHhcc-eeE
Confidence 237999999999986 444999999998 4455555543 3333 68889998 899
Q ss_pred eCCCCCHHHHHHHHHH
Q 013706 332 HFNDFNSEELAKILHI 347 (438)
Q Consensus 332 ~~~~~~~~e~~~il~~ 347 (438)
.|++|+.++..+.+..
T Consensus 163 ~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 163 VVTPPSTAQAMQWLKG 178 (319)
T ss_pred eCCCCCHHHHHHHHHH
Confidence 9999999998887754
No 317
>PF13173 AAA_14: AAA domain
Probab=98.93 E-value=7.6e-09 Score=83.99 Aligned_cols=121 Identities=19% Similarity=0.259 Sum_probs=74.1
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHc---cCcEEEEeCcccccC
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIP 276 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~ 276 (438)
+.++++||.|||||++++.+++.+. ....++.++..+.......... +.+.+.+. ...+|||||++.+..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-----~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~~ 75 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-----PPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLPD 75 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-----ccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhcc
Confidence 4689999999999999999998765 1225566666554332111100 22223222 458999999988841
Q ss_pred CCCCCCchhHHHHHHHHHhhccCC-CEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHH
Q 013706 277 MQKADDKDYGIEALEEIMSVMDGG-KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEEL 341 (438)
Q Consensus 277 ~~~~~~~~~~~~~~~~ll~~~~~~-~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~ 341 (438)
....+....|.+ ++.+|++++......- .....+.+|. ..+++.|++-+|.
T Consensus 76 ------------~~~~lk~l~d~~~~~~ii~tgS~~~~l~~-~~~~~l~gr~-~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 76 ------------WEDALKFLVDNGPNIKIILTGSSSSLLSK-DIAESLAGRV-IEIELYPLSFREF 127 (128)
T ss_pred ------------HHHHHHHHHHhccCceEEEEccchHHHhh-cccccCCCeE-EEEEECCCCHHHh
Confidence 223444444443 5666666655444311 2256777887 6888999887763
No 318
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=7.2e-09 Score=98.72 Aligned_cols=135 Identities=16% Similarity=0.285 Sum_probs=95.5
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchH----HHHHHHHHccC---cEEEEeC
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGP----KTRRRIKEAEG---GILFVDE 270 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~a~~---~il~iDE 270 (438)
+-..+||.||||+|||+||-.+|..... ||+.+-.++- .+|-++. .+.++|+.|.. +||++|+
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~F-------PFvKiiSpe~---miG~sEsaKc~~i~k~F~DAYkS~lsiivvDd 606 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSDF-------PFVKIISPED---MIGLSESAKCAHIKKIFEDAYKSPLSIIVVDD 606 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcCC-------CeEEEeChHH---ccCccHHHHHHHHHHHHHHhhcCcceEEEEcc
Confidence 4567999999999999999999986654 8887655432 3454432 46788888854 8999999
Q ss_pred cccccCCCCCCCchhHHHHHHHHHhhccC----C-CEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCH-HHHHHH
Q 013706 271 AYRLIPMQKADDKDYGIEALEEIMSVMDG----G-KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNS-EELAKI 344 (438)
Q Consensus 271 id~l~~~~~~~~~~~~~~~~~~ll~~~~~----~-~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~-~e~~~i 344 (438)
++.|..-- .-++.++.-++.+|+-++.. + +.+|+++|+...+.. .=.+...|+..|.+|..+. ++..++
T Consensus 607 iErLiD~v-pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~----~m~i~~~F~~~i~Vpnl~~~~~~~~v 681 (744)
T KOG0741|consen 607 IERLLDYV-PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ----EMGILDCFSSTIHVPNLTTGEQLLEV 681 (744)
T ss_pred hhhhhccc-ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH----HcCHHHhhhheeecCccCchHHHHHH
Confidence 99997522 12356777888888888864 3 455555544433321 2346778999999999986 777777
Q ss_pred HHH
Q 013706 345 LHI 347 (438)
Q Consensus 345 l~~ 347 (438)
+..
T Consensus 682 l~~ 684 (744)
T KOG0741|consen 682 LEE 684 (744)
T ss_pred HHH
Confidence 653
No 319
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=5.6e-09 Score=98.42 Aligned_cols=129 Identities=10% Similarity=0.060 Sum_probs=83.8
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC-----------------EEEeecccccccccccchHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR-----------------VTEVQRTDLVGEFVGHTGPKTRRRIKE 260 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~-----------------~~~~~~~~~~~~~~g~~~~~~~~~~~~ 260 (438)
-+..+||+||+|+||+++|+++|+.+.........+ +..+.+..- +.. -.-..++.+.+.
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~~--I~idqiR~l~~~ 99 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KSS--LGVDAVREVTEK 99 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-ccc--CCHHHHHHHHHH
Confidence 344578999999999999999999885422111111 111211100 000 122344554443
Q ss_pred c-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEec-CChhHHHHhhhCcCccCCCCcc
Q 013706 261 A-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAG-YSEPMKRVIASNEGFCRRVTKF 330 (438)
Q Consensus 261 a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~-~~~~~~~~~~~~p~l~~R~~~~ 330 (438)
. ...|++||++|+|.. .+.|.||..+|+ ...++|+.+ ++..+ -|.+++|+ ..
T Consensus 100 ~~~~~~~g~~kV~iI~~ae~m~~-----------~AaNaLLKtLEEPp~~t~fiL~t~~~~~l------LpTIrSRC-q~ 161 (334)
T PRK07993 100 LYEHARLGGAKVVWLPDAALLTD-----------AAANALLKTLEEPPENTWFFLACREPARL------LATLRSRC-RL 161 (334)
T ss_pred HhhccccCCceEEEEcchHhhCH-----------HHHHHHHHHhcCCCCCeEEEEEECChhhC------hHHHHhcc-cc
Confidence 2 237999999999987 445999999998 445555553 33333 68889998 68
Q ss_pred eeCCCCCHHHHHHHHHH
Q 013706 331 FHFNDFNSEELAKILHI 347 (438)
Q Consensus 331 i~~~~~~~~e~~~il~~ 347 (438)
+.|++|+.++..+.+..
T Consensus 162 ~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 162 HYLAPPPEQYALTWLSR 178 (334)
T ss_pred ccCCCCCHHHHHHHHHH
Confidence 89999999988887754
No 320
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.92 E-value=1.2e-08 Score=91.54 Aligned_cols=100 Identities=17% Similarity=0.279 Sum_probs=61.2
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccc---cchHHHHHHHHHc-cCcEEEEeCcccc
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG---HTGPKTRRRIKEA-EGGILFVDEAYRL 274 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~a-~~~il~iDEid~l 274 (438)
..+++|+||||||||.+|.++++++...+. .++.++.+++...+.+ ........+++.. ...+|+|||++..
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~----~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~ 174 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGK----SVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQ 174 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCC----eEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCC
Confidence 358999999999999999999999876443 5666677666643322 1111222344433 4579999999876
Q ss_pred cCCCCCCCchhHHHHHHHHHhhccC-CCEEEEEec
Q 013706 275 IPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAG 308 (438)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~ll~~~~~-~~v~vi~~~ 308 (438)
.. ++....++..++..-.+ ..-++|.++
T Consensus 175 ~~------s~~~~~~l~~Ii~~Ry~~~~~tiitSN 203 (244)
T PRK07952 175 TE------SRYEKVIINQIVDRRSSSKRPTGMLTN 203 (244)
T ss_pred CC------CHHHHHHHHHHHHHHHhCCCCEEEeCC
Confidence 42 33444455555544322 344444443
No 321
>PRK12377 putative replication protein; Provisional
Probab=98.89 E-value=1.1e-08 Score=91.87 Aligned_cols=73 Identities=26% Similarity=0.368 Sum_probs=48.3
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccccccc--chHHHHHHHHHc-cCcEEEEeCccccc
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH--TGPKTRRRIKEA-EGGILFVDEAYRLI 275 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~a-~~~il~iDEid~l~ 275 (438)
..+++|+||||||||.+|.+|++.+...+. .++.++..++...+-.. ......+.++.. ...+|+|||++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~----~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~ 176 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGR----SVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQR 176 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCC----CeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCC
Confidence 368999999999999999999999876443 45556666655432110 001122334433 44799999997653
No 322
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.87 E-value=1.3e-08 Score=90.20 Aligned_cols=92 Identities=24% Similarity=0.379 Sum_probs=68.4
Q ss_pred CCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc-----ccccchH-------HHHHHHHHccCc
Q 013706 197 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-----FVGHTGP-------KTRRRIKEAEGG 264 (438)
Q Consensus 197 ~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~-------~~~~~~~~a~~~ 264 (438)
.+..++||.||+|.||+.+||.|.+.-. ..--.+++|++++|+.+.+. ++|+... .-..++..|.+|
T Consensus 206 rsr~p~ll~gptgagksflarriyelk~-arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadgg 284 (531)
T COG4650 206 RSRAPILLNGPTGAGKSFLARRIYELKQ-ARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGG 284 (531)
T ss_pred hccCCeEeecCCCcchhHHHHHHHHHHH-HHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCc
Confidence 3567899999999999999999976432 22234579999999876543 5665221 223567788899
Q ss_pred EEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC
Q 013706 265 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG 300 (438)
Q Consensus 265 il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~ 300 (438)
.||+|||..+..+.| ..||..++++
T Consensus 285 mlfldeigelgadeq-----------amllkaieek 309 (531)
T COG4650 285 MLFLDEIGELGADEQ-----------AMLLKAIEEK 309 (531)
T ss_pred eEehHhhhhcCccHH-----------HHHHHHHHhh
Confidence 999999999987665 6788888764
No 323
>PRK08181 transposase; Validated
Probab=98.87 E-value=1.5e-08 Score=92.24 Aligned_cols=75 Identities=24% Similarity=0.335 Sum_probs=50.8
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccc-cchHHHHHHHHHc-cCcEEEEeCccccc
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG-HTGPKTRRRIKEA-EGGILFVDEAYRLI 275 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~a-~~~il~iDEid~l~ 275 (438)
...+++|+||||||||.+|.++++++...|. .++.++..+++..+.. .......+.++.. +.-+|+|||++.+.
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~----~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGW----RVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVT 180 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCC----ceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEecccccc
Confidence 3468999999999999999999998865443 4556666666554311 1112233344433 44799999998876
Q ss_pred C
Q 013706 276 P 276 (438)
Q Consensus 276 ~ 276 (438)
.
T Consensus 181 ~ 181 (269)
T PRK08181 181 K 181 (269)
T ss_pred C
Confidence 4
No 324
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=2.1e-08 Score=103.28 Aligned_cols=150 Identities=21% Similarity=0.244 Sum_probs=115.4
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCC---cCCCCEEEeecccc--cccccccchHHHHHHHHHcc----CcEEEE
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVTEVQRTDL--VGEFVGHTGPKTRRRIKEAE----GGILFV 268 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~---~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~a~----~~il~i 268 (438)
...|-+|.|+||+|||.++.-+++.....++ .....++.++...+ ..++-|+.+.+++.+.+++. +-||||
T Consensus 207 tk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfi 286 (898)
T KOG1051|consen 207 TKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFL 286 (898)
T ss_pred CCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 4478999999999999999999998754332 22344555555433 34577888889998888643 369999
Q ss_pred eCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHH
Q 013706 269 DEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIK 348 (438)
Q Consensus 269 DEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~ 348 (438)
||+|.+.....+ .....+.+.|...+..+.+.+|+||+.+.+.+.+..+|++.+|| ..+.++.|+.++...|+...
T Consensus 287 gelh~lvg~g~~---~~~~d~~nlLkp~L~rg~l~~IGatT~e~Y~k~iekdPalErrw-~l~~v~~pS~~~~~~iL~~l 362 (898)
T KOG1051|consen 287 GELHWLVGSGSN---YGAIDAANLLKPLLARGGLWCIGATTLETYRKCIEKDPALERRW-QLVLVPIPSVENLSLILPGL 362 (898)
T ss_pred cceeeeecCCCc---chHHHHHHhhHHHHhcCCeEEEecccHHHHHHHHhhCcchhhCc-ceeEeccCcccchhhhhhhh
Confidence 999999876543 12456778888888888899999999888889999999999999 67788999988877777654
Q ss_pred Hhc
Q 013706 349 MNN 351 (438)
Q Consensus 349 l~~ 351 (438)
-.+
T Consensus 363 ~~~ 365 (898)
T KOG1051|consen 363 SER 365 (898)
T ss_pred hhh
Confidence 443
No 325
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.84 E-value=2e-07 Score=84.06 Aligned_cols=163 Identities=18% Similarity=0.265 Sum_probs=81.9
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe-ecc------cc-------------cccc-----------
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV-QRT------DL-------------VGEF----------- 246 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~-~~~------~~-------------~~~~----------- 246 (438)
+...++++||.|+|||++.+.+.+.+...+.. ..++.. ... .+ ....
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~--~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 96 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINELKEKGYK--VVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISK 96 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHCT--EEC--CCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEEC
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCc--EEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhh
Confidence 45789999999999999999999877321110 000000 000 00 0000
Q ss_pred --cccchHHHHHHHHH---c-cCcEEEEeCccccc-CCCCCCCchhHHHHHHHHHhhc----cCCCEEEEEecCChhHH-
Q 013706 247 --VGHTGPKTRRRIKE---A-EGGILFVDEAYRLI-PMQKADDKDYGIEALEEIMSVM----DGGKVVVIFAGYSEPMK- 314 (438)
Q Consensus 247 --~g~~~~~~~~~~~~---a-~~~il~iDEid~l~-~~~~~~~~~~~~~~~~~ll~~~----~~~~v~vi~~~~~~~~~- 314 (438)
.......+..+++. . ...||+|||++.+. .... .. ..+..|...+ ....+.+|++++...+.
T Consensus 97 ~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~--~~----~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~ 170 (234)
T PF01637_consen 97 DLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE--DK----DFLKSLRSLLDSLLSQQNVSIVITGSSDSLME 170 (234)
T ss_dssp TS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT--TH----HHHHHHHHHHHH----TTEEEEEEESSHHHHH
T ss_pred cchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc--hH----HHHHHHHHHHhhccccCCceEEEECCchHHHH
Confidence 00112233333332 2 34899999999998 3221 11 2233333333 33556555555544333
Q ss_pred HHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHH
Q 013706 315 RVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKE 379 (438)
Q Consensus 315 ~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (438)
.+....+++..|+.. +.+++++.++..++++....+. . .+ ..+++.+..+..-+
T Consensus 171 ~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~-------~~--~~~~~~~~~i~~~~ 224 (234)
T PF01637_consen 171 EFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKEL-I-------KL--PFSDEDIEEIYSLT 224 (234)
T ss_dssp HTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC----------------HHHHHHHHHHH
T ss_pred HhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHh-h-------cc--cCCHHHHHHHHHHh
Confidence 434456778889966 9999999999999999987753 1 12 23666666655543
No 326
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=98.83 E-value=2.7e-09 Score=108.52 Aligned_cols=128 Identities=27% Similarity=0.341 Sum_probs=94.0
Q ss_pred CcHHHHHHHcCCHHHHHHHhcCCCCCCccccccc--CCCChHHHHHHHcCCHHHHHHHHHCCCCcccc-cCCCCcHHHHH
Q 013706 5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN--MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAK-ANNGMTPLHLS 81 (438)
Q Consensus 5 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d--~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~g~t~L~~A 81 (438)
+|||.+|...|++++++.||. +|+.+|.+. +.|-.||++|+++||...++.|++.|.|+|.+ ..+-+|+|.+|
T Consensus 858 ytPlsla~Sggy~~iI~~llS----~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla 933 (2131)
T KOG4369|consen 858 YTPLSLARSGGYTKIIHALLS----SGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLA 933 (2131)
T ss_pred cCchhhhcCcchHHHHHHHhh----cccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeec
Confidence 577777777777777777777 566666654 45777888888888888888888888877775 33456777777
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 141 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~ 141 (438)
+ -.|+.+++.+||.+.+++..+-+-|.||| +-++.++..++-.+|+..|++.+..
T Consensus 934 ~----fqgr~evv~lLLa~~anvehRaktgltpl-me~AsgGyvdvg~~li~~gad~nas 988 (2131)
T KOG4369|consen 934 L----FQGRPEVVFLLLAAQANVEHRAKTGLTPL-MEMASGGYVDVGNLLIAAGADTNAS 988 (2131)
T ss_pred c----ccCcchHHHHHHHHhhhhhhhcccCCccc-chhhcCCccccchhhhhcccccccC
Confidence 7 55677778888877777777777788888 6666677777777777777765443
No 327
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.80 E-value=7.1e-08 Score=90.52 Aligned_cols=73 Identities=19% Similarity=0.253 Sum_probs=48.6
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccc---cchHHHHHHHHHccC-cEEEEeCcccc
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG---HTGPKTRRRIKEAEG-GILFVDEAYRL 274 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~~a~~-~il~iDEid~l 274 (438)
..+++|+||||||||.||.++|+++...+. .++.++..+++..+.. .........++.... -+|+|||++..
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~----~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e 258 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGK----SVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTE 258 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCC----eEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCC
Confidence 378999999999999999999999865443 5666776666554321 111111112333333 79999999776
Q ss_pred c
Q 013706 275 I 275 (438)
Q Consensus 275 ~ 275 (438)
.
T Consensus 259 ~ 259 (329)
T PRK06835 259 K 259 (329)
T ss_pred C
Confidence 4
No 328
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.79 E-value=1.7e-07 Score=91.40 Aligned_cols=248 Identities=19% Similarity=0.256 Sum_probs=138.0
Q ss_pred HHhhhcChHHHHHHHH-HHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 160 ELSNIVGLHELKIQLR-KWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
-+-.|.|.+.+|.-|. .+...+ ++..+...+.+...||++.|.|||||+-+-++.+..+.. ++...+... +
T Consensus 343 l~PsIyGhe~VK~GilL~LfGGv-----~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR-~vYtsGkaS--S 414 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSLFGGV-----HKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPR-SVYTSGKAS--S 414 (764)
T ss_pred hCccccchHHHHhhHHHHHhCCc-----cccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCc-ceEecCccc--c
Confidence 3556788888877654 222222 111122344456779999999999999999999875532 111111110 0
Q ss_pred ccccccccccc--chHH--HHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCE------------
Q 013706 239 RTDLVGEFVGH--TGPK--TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKV------------ 302 (438)
Q Consensus 239 ~~~~~~~~~g~--~~~~--~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v------------ 302 (438)
++.+....+-. +..- -..++-.|.+||--|||+|++--+.| .++.+.|+...|
T Consensus 415 aAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dq-----------vAihEAMEQQtISIaKAGv~aTLn 483 (764)
T KOG0480|consen 415 AAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQ-----------VAIHEAMEQQTISIAKAGVVATLN 483 (764)
T ss_pred cccceEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhH-----------HHHHHHHHhheehheecceEEeec
Confidence 01111111110 0000 01234456789999999999987666 788888886322
Q ss_pred ---EEEEecC--------ChhHHHHhhhCcCccCCCCcce-eCCCCCHHHHHHHHHHHHhcccccccc------------
Q 013706 303 ---VVIFAGY--------SEPMKRVIASNEGFCRRVTKFF-HFNDFNSEELAKILHIKMNNQTEDSLL------------ 358 (438)
Q Consensus 303 ---~vi~~~~--------~~~~~~~~~~~p~l~~R~~~~i-~~~~~~~~e~~~il~~~l~~~~~~~~~------------ 358 (438)
.+|+|+| ...+..-+...+++.+|||..+ -++.++...=..|.++.+.........
T Consensus 484 ARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~v 563 (764)
T KOG0480|consen 484 ARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQV 563 (764)
T ss_pred chhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHH
Confidence 3344432 1222233334589999997754 468888766666666665543211000
Q ss_pred -----ccccccccccHHHHHHHHHHHhhHhhhc---------cccccchHHHHHHHHHHhhccccCCCCChhhhhhccHH
Q 013706 359 -----YGFKLHSSCSMDAIAALIEKETTEKQRR---------EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLE 424 (438)
Q Consensus 359 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~ 424 (438)
|...+.|.++.++-+.+.+.|.+-.... +-..|.|..++.-+...| |+ +-...+|.+
T Consensus 564 rkYi~yAR~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~A--r~-------~~~devt~~ 634 (764)
T KOG0480|consen 564 RKYIRYARNFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARA--RV-------ECRDEVTKE 634 (764)
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHH--hh-------hhhhhccHH
Confidence 1114455566666666666554322222 344577777765443333 11 123468999
Q ss_pred HHHHHHHHHHh
Q 013706 425 DLEAGLKLLLR 435 (438)
Q Consensus 425 d~~~a~~~~~~ 435 (438)
|+.+|++.++.
T Consensus 635 ~v~ea~eLlk~ 645 (764)
T KOG0480|consen 635 DVEEAVELLKK 645 (764)
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 329
>PF13606 Ank_3: Ankyrin repeat
Probab=98.79 E-value=7.5e-09 Score=60.11 Aligned_cols=28 Identities=57% Similarity=0.829 Sum_probs=16.4
Q ss_pred CChHHHHHHHcCCHHHHHHHHHCCCCcc
Q 013706 41 GETPLHMAAKNGCNEAAKLLLAHGAFIE 68 (438)
Q Consensus 41 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~ 68 (438)
|+||||+||..|+.+++++|+++|+|+|
T Consensus 2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn 29 (30)
T PF13606_consen 2 GNTPLHLAASNGNIEIVKYLLEHGADVN 29 (30)
T ss_pred CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence 5555565555555555555555555554
No 330
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.78 E-value=2.6e-08 Score=97.66 Aligned_cols=211 Identities=19% Similarity=0.276 Sum_probs=111.6
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc--ccc---cchHH--HHHHHHHccCcEEEEeC
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE--FVG---HTGPK--TRRRIKEAEGGILFVDE 270 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~--~~g---~~~~~--~~~~~~~a~~~il~iDE 270 (438)
..-||||.|.||||||-+-+.+++.+.. |...++ .++.-++- |+- ++..- -..++-.+.+||--|||
T Consensus 461 ~~INILL~GDPGtsKSqlLqyv~~l~pR-g~yTSG-----kGsSavGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDE 534 (804)
T KOG0478|consen 461 GDINILLVGDPGTSKSQLLQYCHRLLPR-GVYTSG-----KGSSAVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDE 534 (804)
T ss_pred ccceEEEecCCCcCHHHHHHHHHHhCCc-ceeecC-----CccchhcceeeEEecCccceeeeecCcEEEcCCceEEchh
Confidence 3468999999999999999999997753 222221 11111110 110 00000 01123345679999999
Q ss_pred cccccCCCCCCCchhHHHHHHHHHhhccCC---------------CEEEEEecC--------ChhHHHHhhhCcCccCCC
Q 013706 271 AYRLIPMQKADDKDYGIEALEEIMSVMDGG---------------KVVVIFAGY--------SEPMKRVIASNEGFCRRV 327 (438)
Q Consensus 271 id~l~~~~~~~~~~~~~~~~~~ll~~~~~~---------------~v~vi~~~~--------~~~~~~~~~~~p~l~~R~ 327 (438)
+|+|..+.+ +.|.+.|+.. +--|+++.| +..+..-+...|.|++||
T Consensus 535 FDKM~dStr-----------SvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRF 603 (804)
T KOG0478|consen 535 FDKMSDSTR-----------SVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRF 603 (804)
T ss_pred hhhhhHHHH-----------HHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhh
Confidence 999975443 6677777641 224555443 222334445569999999
Q ss_pred Cccee-CCCCCHHHHHHHHHHHHhccccccc----------------cccc-cccccccHHHHHHHHHHHhhHhhhcccc
Q 013706 328 TKFFH-FNDFNSEELAKILHIKMNNQTEDSL----------------LYGF-KLHSSCSMDAIAALIEKETTEKQRREMN 389 (438)
Q Consensus 328 ~~~i~-~~~~~~~e~~~il~~~l~~~~~~~~----------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~n 389 (438)
|.++- ++.++..-=..|..+...-..+... .|.. .+.+.+++++...+...|..-.....++
T Consensus 604 DLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~~ 683 (804)
T KOG0478|consen 604 DLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQAYVDMRKIGEGA 683 (804)
T ss_pred cEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHHhhhhhhhcccc
Confidence 87665 4666543222333332222111000 0112 3566777888888887776332222222
Q ss_pred c------cchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706 390 G------GLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 434 (438)
Q Consensus 390 ~------~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~ 434 (438)
+ |.+..++..+...+..|.+ ..+...|+++|+..++
T Consensus 684 ~~itat~rQlesLiRlsEahak~r~s---------~~ve~~dV~eA~~l~R 725 (804)
T KOG0478|consen 684 GQITATPRQLESLIRLSEAHAKMRLS---------NRVEEIDVEEAVRLLR 725 (804)
T ss_pred cccchhHHHHHHHHHHHHHHHHhhcc---------cccchhhHHHHHHHHH
Confidence 2 3444444333333322322 3456778888876654
No 331
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.75 E-value=1.6e-07 Score=83.88 Aligned_cols=125 Identities=24% Similarity=0.377 Sum_probs=77.1
Q ss_pred HHHHHHHHh-hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC
Q 013706 154 MDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD 232 (438)
Q Consensus 154 ~~~~~~~l~-~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~ 232 (438)
.+.++.+++ .+.|+.-+++.|-..++..... -....|.-+-|+|+|||||..+++.||+.++..|..+.-
T Consensus 73 ~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n---------~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~ 143 (344)
T KOG2170|consen 73 LDGLEKDLARALFGQHLAKQLVVNALKSHWAN---------PNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPF 143 (344)
T ss_pred chHHHHHHHHHhhchHHHHHHHHHHHHHHhcC---------CCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchh
Confidence 455666665 4789999988887765544211 111233344588999999999999999999875543321
Q ss_pred CEEEeecccc-----cccccccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhcc
Q 013706 233 RVTEVQRTDL-----VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD 298 (438)
Q Consensus 233 ~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~ 298 (438)
....+..-++ +..|--+-...+++-......+++++||+|+|.+ .++++|-..+|
T Consensus 144 V~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~-----------gLld~lkpfLd 203 (344)
T KOG2170|consen 144 VHHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPP-----------GLLDVLKPFLD 203 (344)
T ss_pred HHHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCH-----------hHHHHHhhhhc
Confidence 1111111111 1222222333444455556679999999999986 55666666666
No 332
>PRK06526 transposase; Provisional
Probab=98.74 E-value=2.4e-08 Score=90.52 Aligned_cols=75 Identities=28% Similarity=0.337 Sum_probs=47.9
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccc-cchHHHHHHHHH-ccCcEEEEeCccccc
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG-HTGPKTRRRIKE-AEGGILFVDEAYRLI 275 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~-a~~~il~iDEid~l~ 275 (438)
...+++|+||||||||.+|.+++.++...|. .+...+..+++..... .........+.. ....+|+|||++.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~----~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGH----RVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYIP 172 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCC----chhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccCC
Confidence 4578999999999999999999998866553 2333444444433211 011122233333 345799999999875
Q ss_pred C
Q 013706 276 P 276 (438)
Q Consensus 276 ~ 276 (438)
.
T Consensus 173 ~ 173 (254)
T PRK06526 173 F 173 (254)
T ss_pred C
Confidence 4
No 333
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.74 E-value=1.6e-08 Score=60.59 Aligned_cols=31 Identities=55% Similarity=0.811 Sum_probs=18.4
Q ss_pred CChHHHHHHHcCCHHHHHHHHHCCCCccccc
Q 013706 41 GETPLHMAAKNGCNEAAKLLLAHGAFIEAKA 71 (438)
Q Consensus 41 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~ 71 (438)
|+||||+|+..|+.+++++|+++|++++.+|
T Consensus 2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d 32 (33)
T PF00023_consen 2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD 32 (33)
T ss_dssp SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence 5566666666666666666666666655554
No 334
>PF05729 NACHT: NACHT domain
Probab=98.73 E-value=2.6e-07 Score=78.47 Aligned_cols=144 Identities=15% Similarity=0.240 Sum_probs=80.6
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHHcCCcCC--CCEEEeecccccc------------cccccchHH----HHHHHHHcc
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYMVGILPT--DRVTEVQRTDLVG------------EFVGHTGPK----TRRRIKEAE 262 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~--~~~~~~~~~~~~~------------~~~g~~~~~----~~~~~~~a~ 262 (438)
-++++|+||+|||++++.++..+........ ...+.....+... ......... .....+...
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 3789999999999999999998865443221 1122222222111 001111111 222334445
Q ss_pred CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCC--CcceeCCCCCHHH
Q 013706 263 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRV--TKFFHFNDFNSEE 340 (438)
Q Consensus 263 ~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~--~~~i~~~~~~~~e 340 (438)
..+|+||-+|.+....+..........+..++..---..+.++.++++.....+ .+++ ...+.+++++.++
T Consensus 82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~-------~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDL-------RRRLKQAQILELEPFSEED 154 (166)
T ss_pred ceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHH-------HHhcCCCcEEEECCCCHHH
Confidence 689999999999874432111112233444444311134555555555555322 2222 1578999999999
Q ss_pred HHHHHHHHHhc
Q 013706 341 LAKILHIKMNN 351 (438)
Q Consensus 341 ~~~il~~~l~~ 351 (438)
+.++++.++..
T Consensus 155 ~~~~~~~~f~~ 165 (166)
T PF05729_consen 155 IKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHhhc
Confidence 99999998764
No 335
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.73 E-value=3.7e-08 Score=92.38 Aligned_cols=86 Identities=31% Similarity=0.333 Sum_probs=76.0
Q ss_pred HHHHHHHcCCHHHHHHHhcCCCCCCcccccccC-CCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcc
Q 013706 7 PLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM-YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYS 85 (438)
Q Consensus 7 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 85 (438)
-||.++..|+.+.--.||. .|+++|..+. .|.||||.|+..|+...+++|+-+|+|++++|.+|.||+-+|-
T Consensus 136 QLhasvRt~nlet~LRll~----lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR--- 208 (669)
T KOG0818|consen 136 QLHSSVRTGNLETCLRLLS----LGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYAR--- 208 (669)
T ss_pred HHHHHhhcccHHHHHHHHH----cccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHH---
Confidence 4899999999887777776 6899999885 5999999999999999999999999999999999999999998
Q ss_pred cccCcHHHHHHHHhC
Q 013706 86 IRSEDYATVKTLLEY 100 (438)
Q Consensus 86 ~~~~~~~~~~~Ll~~ 100 (438)
..||.++.+.|++.
T Consensus 209 -~~gH~~laeRl~e~ 222 (669)
T KOG0818|consen 209 -QGGHHELAERLVEI 222 (669)
T ss_pred -hcCchHHHHHHHHH
Confidence 88998887766653
No 336
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.70 E-value=5.7e-09 Score=103.39 Aligned_cols=76 Identities=30% Similarity=0.466 Sum_probs=45.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCC-CChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMY-GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
.|+|+||+|+..|..+++++|++ +|++++.+|.. |+||||-|...|+++|+-.|+.+|+.+..+|+.|.+||..-
T Consensus 51 ~GR~alH~~~S~~k~~~l~wLlq----hGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq~~ 126 (1267)
T KOG0783|consen 51 YGRTALHIAVSENKNSFLRWLLQ----HGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQFL 126 (1267)
T ss_pred hccceeeeeeccchhHHHHHHHh----cCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHHHH
Confidence 35566666666666666666665 45556666543 66666666666666666666666666666666666665554
Q ss_pred h
Q 013706 82 V 82 (438)
Q Consensus 82 ~ 82 (438)
+
T Consensus 127 ~ 127 (1267)
T KOG0783|consen 127 S 127 (1267)
T ss_pred h
Confidence 4
No 337
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.69 E-value=5e-08 Score=79.52 Aligned_cols=102 Identities=25% Similarity=0.302 Sum_probs=60.9
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCc-CCCCEEEeeccccc------cc---ccc------cchHHH----HHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGIL-PTDRVTEVQRTDLV------GE---FVG------HTGPKT----RRRI 258 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~-~~~~~~~~~~~~~~------~~---~~g------~~~~~~----~~~~ 258 (438)
...++++||||+|||++++.+++.+...... ....++.++++... .. .++ .+...+ .+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 4578999999999999999999987531000 02245555554321 11 111 112222 2223
Q ss_pred HHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCC
Q 013706 259 KEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 310 (438)
Q Consensus 259 ~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~ 310 (438)
+.....+|+|||+|.+. + ...++.|...+++..+.+|+++++
T Consensus 84 ~~~~~~~lviDe~~~l~-~---------~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S---------DEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T---------HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcC-C---------HHHHHHHHHHHhCCCCeEEEEECh
Confidence 33334699999999985 1 367788888888888888887655
No 338
>PF13606 Ank_3: Ankyrin repeat
Probab=98.67 E-value=2.3e-08 Score=58.05 Aligned_cols=30 Identities=43% Similarity=0.611 Sum_probs=27.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccc
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA 36 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 36 (438)
+|+||||+||..|+.++|++|++ .|+++|.
T Consensus 1 ~G~T~Lh~A~~~g~~e~v~~Ll~----~gadvn~ 30 (30)
T PF13606_consen 1 NGNTPLHLAASNGNIEIVKYLLE----HGADVNA 30 (30)
T ss_pred CCCCHHHHHHHhCCHHHHHHHHH----cCCCCCC
Confidence 59999999999999999999999 6777763
No 339
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.67 E-value=2e-08 Score=93.68 Aligned_cols=92 Identities=27% Similarity=0.240 Sum_probs=64.1
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhC-CCCCcccCCCCCccccc
Q 013706 39 MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEY-NADCSAKDNEGKTPLDH 117 (438)
Q Consensus 39 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~-ga~~~~~d~~g~t~l~~ 117 (438)
+++..++++|+..|..+.++-+.-.|.|++.+|-+.+|+||.|+ ..|+.+++++|++. +.+++.+|.+|+||| -
T Consensus 504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAA----aEG~v~v~kfl~~~~kv~~~~kDRw~rtPl-D 578 (622)
T KOG0506|consen 504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAA----AEGHVEVVKFLLNACKVDPDPKDRWGRTPL-D 578 (622)
T ss_pred ccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeec----ccCceeHHHHHHHHHcCCCChhhccCCCcc-h
Confidence 45566677777777777777666677777777777777777777 67777777777754 677777777777777 4
Q ss_pred cccCCCchhHHHHHHhcc
Q 013706 118 LSNGPGSAKLRELLLWHS 135 (438)
Q Consensus 118 ~a~~~~~~~~~~lL~~~~ 135 (438)
-|...++.+++.+|....
T Consensus 579 dA~~F~h~~v~k~L~~~~ 596 (622)
T KOG0506|consen 579 DAKHFKHKEVVKLLEEAQ 596 (622)
T ss_pred HhHhcCcHHHHHHHHHHh
Confidence 445566777777766543
No 340
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.67 E-value=1.6e-08 Score=100.26 Aligned_cols=102 Identities=26% Similarity=0.350 Sum_probs=86.7
Q ss_pred HcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccC-CCCcHHHHHhhcccccCcH
Q 013706 13 GYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN-NGMTPLHLSVWYSIRSEDY 91 (438)
Q Consensus 13 ~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~~A~~~~~~~~~~ 91 (438)
..+...-++-++... .+--.|.+|..|+|+||+++..+...+++.|+++|++++.+|. .|+||||-|. ..|+.
T Consensus 26 tKs~~Nqlk~F~~k~--c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRai----yyG~i 99 (1267)
T KOG0783|consen 26 TKSEPNQLKGFSEKS--CQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAI----YYGNI 99 (1267)
T ss_pred hcCChhHHHHHHHHh--hhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhh----hhchH
Confidence 345554455555431 2334888999999999999999999999999999999999986 7999999999 77999
Q ss_pred HHHHHHHhCCCCCcccCCCCCcccccccc
Q 013706 92 ATVKTLLEYNADCSAKDNEGKTPLDHLSN 120 (438)
Q Consensus 92 ~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~ 120 (438)
+++..||.+|+...+.|+.|..||+.++.
T Consensus 100 dca~lLL~~g~SL~i~Dkeglsplq~~~r 128 (1267)
T KOG0783|consen 100 DCASLLLSKGRSLRIKDKEGLSPLQFLSR 128 (1267)
T ss_pred HHHHHHHhcCCceEEecccCCCHHHHHhh
Confidence 99999999999999999999999966655
No 341
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.66 E-value=3.4e-08 Score=59.12 Aligned_cols=33 Identities=33% Similarity=0.499 Sum_probs=30.4
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccC
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM 39 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~ 39 (438)
+|+||||+||..|+.+++++|++ .|++++.+|+
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~----~ga~~~~~d~ 33 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLK----HGADINARDN 33 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHH----TTSCTTCBCT
T ss_pred CcccHHHHHHHHHHHHHHHHHHH----CcCCCCCCCC
Confidence 69999999999999999999999 7899998774
No 342
>PRK09183 transposase/IS protein; Provisional
Probab=98.64 E-value=1.1e-07 Score=86.84 Aligned_cols=75 Identities=25% Similarity=0.327 Sum_probs=48.2
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccc-cchHHHHHHHHH--ccCcEEEEeCcccc
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVG-HTGPKTRRRIKE--AEGGILFVDEAYRL 274 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~--a~~~il~iDEid~l 274 (438)
...+++|+||||||||++|.+++..+...|. .+..++..++...+.. .....+...+.. ....+++|||++..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~----~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGI----KVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYL 176 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCC----eEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccC
Confidence 4568999999999999999999987654442 3444555555433211 111123344433 34579999999876
Q ss_pred cC
Q 013706 275 IP 276 (438)
Q Consensus 275 ~~ 276 (438)
..
T Consensus 177 ~~ 178 (259)
T PRK09183 177 PF 178 (259)
T ss_pred CC
Confidence 44
No 343
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=2.2e-07 Score=84.86 Aligned_cols=118 Identities=16% Similarity=0.148 Sum_probs=73.4
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCc---------CCCCEEEeecccccccccccchHHHHHHHHHc-------c
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGIL---------PTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------E 262 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~---------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~ 262 (438)
+..+||+||+|+||+.+|..+|+.+...... ....+..+.+.. .++.+ .-..++.+.++. .
T Consensus 19 ~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~~I--~idqiR~l~~~~~~~p~e~~ 95 (290)
T PRK05917 19 PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGRLH--SIETPRAIKKQIWIHPYESP 95 (290)
T ss_pred CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCCcC--cHHHHHHHHHHHhhCccCCC
Confidence 4457899999999999999999988642200 011121121110 00001 123344444432 2
Q ss_pred CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEec-CChhHHHHhhhCcCccCCCCcceeCCCCC
Q 013706 263 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAG-YSEPMKRVIASNEGFCRRVTKFFHFNDFN 337 (438)
Q Consensus 263 ~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~-~~~~~~~~~~~~p~l~~R~~~~i~~~~~~ 337 (438)
..|++||++|.|... +.|.||..+++ ..+++|+.+ +.+.+ .|.+++|+ ..+.|+++.
T Consensus 96 ~kv~ii~~ad~mt~~-----------AaNaLLK~LEEPp~~~~fiL~~~~~~~l------l~TI~SRc-q~~~~~~~~ 155 (290)
T PRK05917 96 YKIYIIHEADRMTLD-----------AISAFLKVLEDPPQHGVIILTSAKPQRL------PPTIRSRS-LSIHIPMEE 155 (290)
T ss_pred ceEEEEechhhcCHH-----------HHHHHHHHhhcCCCCeEEEEEeCChhhC------cHHHHhcc-eEEEccchh
Confidence 379999999999874 44999999997 445555544 33333 68889998 888888654
No 344
>PRK06921 hypothetical protein; Provisional
Probab=98.61 E-value=1.7e-07 Score=85.63 Aligned_cols=71 Identities=23% Similarity=0.389 Sum_probs=44.8
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHc-CCcCCCCEEEeecccccccccccchHHHHHHHHHc-cCcEEEEeCccc
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMV-GILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYR 273 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-~~~il~iDEid~ 273 (438)
...+++|+||||||||.|+.++++++... +. .++.++..+++..... ........++.. ...+|+|||++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~----~v~y~~~~~l~~~l~~-~~~~~~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGV----PVLYFPFVEGFGDLKD-DFDLLEAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCc----eEEEEEHHHHHHHHHH-HHHHHHHHHHHhcCCCEEEEecccc
Confidence 35689999999999999999999988653 32 4455555554433211 011112223322 347999999943
No 345
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.60 E-value=9.4e-08 Score=90.84 Aligned_cols=86 Identities=30% Similarity=0.459 Sum_probs=72.9
Q ss_pred HHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhccc
Q 013706 7 PLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSI 86 (438)
Q Consensus 7 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 86 (438)
|||+++.....+.+...+... ....++..|..|+||||+|+.-||..+++.|+..|+++..+|+.||+|||-|+
T Consensus 23 ~lh~~~~~~~~~sl~~el~~~--~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv---- 96 (560)
T KOG0522|consen 23 PLHWAVVTTDSDSLEQELLAK--VSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAV---- 96 (560)
T ss_pred ccchhhhccchhhHHHHHhhh--hhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHH----
Confidence 599999988877777655421 46779999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHH
Q 013706 87 RSEDYATVKTLL 98 (438)
Q Consensus 87 ~~~~~~~~~~Ll 98 (438)
..|+..++..++
T Consensus 97 ~~g~~q~i~~vl 108 (560)
T KOG0522|consen 97 STGNEQIITEVL 108 (560)
T ss_pred HcCCHHHHHHHH
Confidence 667766554444
No 346
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.60 E-value=1.3e-07 Score=90.47 Aligned_cols=95 Identities=23% Similarity=0.284 Sum_probs=80.4
Q ss_pred HHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccc
Q 013706 8 LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIR 87 (438)
Q Consensus 8 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 87 (438)
|.-|+...++..+-+||.|+.....+-...+..|+|+||+||+.|++...++|+=+|+|+.++|.+|+|+|.||- .
T Consensus 628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar----~ 703 (749)
T KOG0705|consen 628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYAR----Q 703 (749)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHh----h
Confidence 455677778888889998754433333445667899999999999999999999999999999999999999998 8
Q ss_pred cCcHHHHHHHHhCCCCCcc
Q 013706 88 SEDYATVKTLLEYNADCSA 106 (438)
Q Consensus 88 ~~~~~~~~~Ll~~ga~~~~ 106 (438)
.|..+++.+|+++|+....
T Consensus 704 a~sqec~d~llq~gcp~e~ 722 (749)
T KOG0705|consen 704 AGSQECIDVLLQYGCPDEC 722 (749)
T ss_pred cccHHHHHHHHHcCCCccc
Confidence 9999999999999987653
No 347
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.60 E-value=4.4e-07 Score=82.34 Aligned_cols=75 Identities=25% Similarity=0.368 Sum_probs=52.8
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccc--hHHHHHHHH-HccCcEEEEeCcccc
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHT--GPKTRRRIK-EAEGGILFVDEAYRL 274 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~-~a~~~il~iDEid~l 274 (438)
...+++|+||||||||.+|-+|++++...|+ .+..++.++++.++-..- ...-.++.. ...--+|+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~----sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGI----SVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCC----eEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCc
Confidence 5679999999999999999999999975444 677777788776532210 111222333 334579999999776
Q ss_pred cC
Q 013706 275 IP 276 (438)
Q Consensus 275 ~~ 276 (438)
..
T Consensus 180 ~~ 181 (254)
T COG1484 180 PF 181 (254)
T ss_pred cC
Confidence 43
No 348
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.59 E-value=2.7e-07 Score=86.02 Aligned_cols=101 Identities=16% Similarity=0.231 Sum_probs=61.4
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccccccc-chHHHHHHHHHc-cCcEEEEeCccccc
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH-TGPKTRRRIKEA-EGGILFVDEAYRLI 275 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~a-~~~il~iDEid~l~ 275 (438)
...+++|+||||||||.||.++|+++...++ .+..+..++++..+... ........++.. ..-+|+|||+..-.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~----~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e~ 230 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGV----SSTLLHFPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGAEQ 230 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCC----CEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCCcc
Confidence 4579999999999999999999999975543 45555556654442211 011223344444 44799999997653
Q ss_pred CCCCCCCchhHH-HHHHHHHh-hccCCCEEEEEec
Q 013706 276 PMQKADDKDYGI-EALEEIMS-VMDGGKVVVIFAG 308 (438)
Q Consensus 276 ~~~~~~~~~~~~-~~~~~ll~-~~~~~~v~vi~~~ 308 (438)
. ++... +++..++. .+.+..-++|.++
T Consensus 231 ~------s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 231 M------SSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred c------cHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 2 22222 45555544 3345555555553
No 349
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.56 E-value=1.4e-07 Score=80.93 Aligned_cols=73 Identities=22% Similarity=0.285 Sum_probs=47.4
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccccccc-chHHHHHHHHH-ccCcEEEEeCcccc
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH-TGPKTRRRIKE-AEGGILFVDEAYRL 274 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~-a~~~il~iDEid~l 274 (438)
...+++|+||||||||.+|-++++++...+. ++..++.++++..+-.. ......+.+.. ...-+|+|||+...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~----~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~ 120 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGY----SVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYE 120 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT------EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCc----ceeEeecCceeccccccccccchhhhcCccccccEeccccccee
Confidence 4578999999999999999999998876554 56667777766543211 11122233333 24589999999644
No 350
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.51 E-value=5.5e-07 Score=82.57 Aligned_cols=128 Identities=15% Similarity=0.200 Sum_probs=78.3
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee---------cccccccc-ccc--chHHHHHHHHHc----
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ---------RTDLVGEF-VGH--TGPKTRRRIKEA---- 261 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~---------~~~~~~~~-~g~--~~~~~~~~~~~a---- 261 (438)
-+..+||+|| +||+++|+.+|+.+.........++-.+. -+|+.--. -|. .-..++.+.+..
T Consensus 23 l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p 100 (290)
T PRK07276 23 LNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSG 100 (290)
T ss_pred cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCc
Confidence 3456799996 68999999999988643321111111110 11111000 011 223455554433
Q ss_pred ---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEec-CChhHHHHhhhCcCccCCCCcceeCCC
Q 013706 262 ---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAG-YSEPMKRVIASNEGFCRRVTKFFHFND 335 (438)
Q Consensus 262 ---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~-~~~~~~~~~~~~p~l~~R~~~~i~~~~ 335 (438)
...|++||++|.+... +.|.||..+++ ...++|+.+ +.+.+ -|.+++|+ ..|.|++
T Consensus 101 ~~~~~kV~II~~ad~m~~~-----------AaNaLLKtLEEPp~~t~~iL~t~~~~~l------LpTI~SRc-q~i~f~~ 162 (290)
T PRK07276 101 YEGKQQVFIIKDADKMHVN-----------AANSLLKVIEEPQSEIYIFLLTNDENKV------LPTIKSRT-QIFHFPK 162 (290)
T ss_pred ccCCcEEEEeehhhhcCHH-----------HHHHHHHHhcCCCCCeEEEEEECChhhC------chHHHHcc-eeeeCCC
Confidence 2379999999999863 44999999998 345555543 33333 68899998 8999977
Q ss_pred CCHHHHHHHHH
Q 013706 336 FNSEELAKILH 346 (438)
Q Consensus 336 ~~~~e~~~il~ 346 (438)
+.++..+++.
T Consensus 163 -~~~~~~~~L~ 172 (290)
T PRK07276 163 -NEAYLIQLLE 172 (290)
T ss_pred -cHHHHHHHHH
Confidence 6666666654
No 351
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.50 E-value=2.5e-06 Score=84.87 Aligned_cols=55 Identities=22% Similarity=0.403 Sum_probs=36.9
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
..+++.....-.++++.|+.... .+.....-+||+||||||||++++++|++++.
T Consensus 17 ~~~eLavhkkKv~eV~~wl~~~~-----------~~~~~~~iLlLtGP~G~GKtttv~~La~elg~ 71 (519)
T PF03215_consen 17 TLDELAVHKKKVEEVRSWLEEMF-----------SGSSPKRILLLTGPSGCGKTTTVKVLAKELGF 71 (519)
T ss_pred CHHHhhccHHHHHHHHHHHHHHh-----------ccCCCcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34556666655566666654321 11122345778999999999999999999853
No 352
>PRK14700 recombination factor protein RarA; Provisional
Probab=98.50 E-value=3e-07 Score=83.19 Aligned_cols=114 Identities=14% Similarity=0.135 Sum_probs=88.3
Q ss_pred HhhccCCCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHH
Q 013706 294 MSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA 373 (438)
Q Consensus 294 l~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 373 (438)
|..+++|.+++|+|||.||...+ +|+|++|+ .++.|.+++.+++..++++.+..... .+ .....++++++.
T Consensus 1 Lp~vE~G~i~LIGATTENP~f~v---n~ALlSR~-~v~~l~~L~~~di~~il~ral~~~~~----~~-~~~~~i~~~al~ 71 (300)
T PRK14700 1 MPYVESGKIILIGATTENPTYYL---NDALVSRL-FILRLKRLSLVATQKLIEKALSQDEV----LA-KHKFKIDDGLYN 71 (300)
T ss_pred CCCccCCcEEEEeecCCCcccee---cHhhhhhh-heeeecCCCHHHHHHHHHHHHHhhhc----cC-CcCCCcCHHHHH
Confidence 35678899999999999999877 99999998 99999999999999999999975210 11 123567889999
Q ss_pred HHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHH
Q 013706 374 ALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 432 (438)
Q Consensus 374 ~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~ 432 (438)
.++... .|++|...|++|.|.... . +..+ ..||.+++++.+..
T Consensus 72 ~ia~~a-------~GDaR~aLN~LE~a~~~~-----~---~~~~-~~it~~~~~~~~~~ 114 (300)
T PRK14700 72 AMHNYN-------EGDCRKILNLLERMFLIS-----T---RGDE-IYLNKELFDQAVGE 114 (300)
T ss_pred HHHHhc-------CCHHHHHHHHHHHHHhhc-----c---ccCC-CccCHHHHHHHHhH
Confidence 998876 677888999999876421 0 1111 24888888887754
No 353
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.44 E-value=2e-06 Score=67.63 Aligned_cols=68 Identities=32% Similarity=0.527 Sum_probs=46.6
Q ss_pred HHHHHHHH-hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcC
Q 013706 154 MDELENEL-SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILP 230 (438)
Q Consensus 154 ~~~~~~~l-~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~ 230 (438)
...++..+ .++.|++-+.+.+-..+...... .....|.-+.|.||||||||.+++.||+.++..|..+
T Consensus 16 ~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~---------~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S 84 (127)
T PF06309_consen 16 ITGLEKDLQRNLFGQHLAVEVVVNAIKGHLAN---------PNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKS 84 (127)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHcC---------CCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCC
Confidence 44455555 46889998888877765544211 1122334455999999999999999999998766443
No 354
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=1.1e-06 Score=78.54 Aligned_cols=119 Identities=8% Similarity=0.021 Sum_probs=73.6
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee---------cccccccc-cc--cchHHHHHHHHH-----
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ---------RTDLVGEF-VG--HTGPKTRRRIKE----- 260 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~---------~~~~~~~~-~g--~~~~~~~~~~~~----- 260 (438)
.+...||+||+|+||..+|.++|+.+..... ..++-.+. -+|+.--+ .+ -....++++.+.
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~--~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s 83 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKA--NGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPS 83 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCC--CCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCc
Confidence 5567899999999999999999998854221 11111111 11111100 00 012233333322
Q ss_pred ---ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecC-ChhHHHHhhhCcCccCCCCcceeCC
Q 013706 261 ---AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGY-SEPMKRVIASNEGFCRRVTKFFHFN 334 (438)
Q Consensus 261 ---a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~-~~~~~~~~~~~p~l~~R~~~~i~~~ 334 (438)
+...|++||++|++.. .+.|.||..+++ .+.++|+.+. .+.+ -|.+++|+ ..+.|+
T Consensus 84 ~e~~~~KV~II~~ae~m~~-----------~AaNaLLK~LEEPp~~t~fiLit~~~~~l------LpTI~SRC-q~~~~~ 145 (261)
T PRK05818 84 VESNGKKIYIIYGIEKLNK-----------QSANSLLKLIEEPPKNTYGIFTTRNENNI------LNTILSRC-VQYVVL 145 (261)
T ss_pred hhcCCCEEEEeccHhhhCH-----------HHHHHHHHhhcCCCCCeEEEEEECChHhC------chHhhhhe-eeeecC
Confidence 1247999999999986 455999999998 4455555543 3333 78899998 678888
Q ss_pred CC
Q 013706 335 DF 336 (438)
Q Consensus 335 ~~ 336 (438)
.+
T Consensus 146 ~~ 147 (261)
T PRK05818 146 SK 147 (261)
T ss_pred Ch
Confidence 87
No 355
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.40 E-value=8.2e-07 Score=81.45 Aligned_cols=138 Identities=18% Similarity=0.228 Sum_probs=72.5
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC--EEEeecccccccccccchHHHHHHHHH--------------c
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR--VTEVQRTDLVGEFVGHTGPKTRRRIKE--------------A 261 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~--------------a 261 (438)
...++||.||+|||||++++.+-+.+.. .. ...++.+... +...+.+.++. .
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~------~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~ 99 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDS------DKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGG 99 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTT------CCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESS
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCc------cccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCC
Confidence 4568999999999999999886543221 12 1222222111 11112221111 1
Q ss_pred cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhh---ccC--------CCEEEEEecCChhHHHHhhhCcCccCCCCcc
Q 013706 262 EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV---MDG--------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKF 330 (438)
Q Consensus 262 ~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~---~~~--------~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~ 330 (438)
+..|+||||+..-.++.-+.. ...+.+.+++.. +|. .++.+++|.++..-. ....|.+.|.| .+
T Consensus 100 k~lv~fiDDlN~p~~d~ygtq--~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr--~~is~R~~r~f-~i 174 (272)
T PF12775_consen 100 KKLVLFIDDLNMPQPDKYGTQ--PPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGR--NPISPRFLRHF-NI 174 (272)
T ss_dssp SEEEEEEETTT-S---TTS----HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT----SHHHHHHTTE-EE
T ss_pred cEEEEEecccCCCCCCCCCCc--CHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCC--CCCChHHhhhe-EE
Confidence 227999999976655433221 122344444432 121 256777776543211 11256777777 78
Q ss_pred eeCCCCCHHHHHHHHHHHHhcc
Q 013706 331 FHFNDFNSEELAKILHIKMNNQ 352 (438)
Q Consensus 331 i~~~~~~~~e~~~il~~~l~~~ 352 (438)
+.++.|+.+.+..|+..++...
T Consensus 175 ~~~~~p~~~sl~~If~~il~~~ 196 (272)
T PF12775_consen 175 LNIPYPSDESLNTIFSSILQSH 196 (272)
T ss_dssp EE----TCCHHHHHHHHHHHHH
T ss_pred EEecCCChHHHHHHHHHHHhhh
Confidence 9999999999999998888753
No 356
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.38 E-value=1.3e-06 Score=74.01 Aligned_cols=108 Identities=20% Similarity=0.238 Sum_probs=62.2
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccc----------------------cccccc-hHH----
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG----------------------EFVGHT-GPK---- 253 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~----------------------~~~g~~-~~~---- 253 (438)
.++++||||+|||+++..++..+... ..+++.++...... .+.... ...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~----~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK----GGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSK 76 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc----CCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHH
Confidence 36899999999999999999877542 22333333322111 011111 111
Q ss_pred HHHHHHHccCcEEEEeCcccccCCCC---CCCchhHHHHHHHHHhhccCCCEEEEEecCChh
Q 013706 254 TRRRIKEAEGGILFVDEAYRLIPMQK---ADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEP 312 (438)
Q Consensus 254 ~~~~~~~a~~~il~iDEid~l~~~~~---~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~ 312 (438)
...........+++|||+..+.+... ........+.+..|.....+..+.+|++++...
T Consensus 77 ~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~ 138 (165)
T cd01120 77 AERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPS 138 (165)
T ss_pred HHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCC
Confidence 11222333568999999998875322 112334456677777777766676666665443
No 357
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.37 E-value=4e-07 Score=85.22 Aligned_cols=91 Identities=24% Similarity=0.235 Sum_probs=83.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHC-CCCcccccCCCCcHHHHH
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH-GAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A 81 (438)
++..++.+|+..|++..++.+.- .|.+++.+|.+.+|+||+|+..|+++++++|++. +.+++.+|.+|+|||--|
T Consensus 505 ~~~i~~~~aa~~GD~~alrRf~l----~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA 580 (622)
T KOG0506|consen 505 DTVINVMYAAKNGDLSALRRFAL----QGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDA 580 (622)
T ss_pred cchhhhhhhhhcCCHHHHHHHHH----hcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHh
Confidence 56778999999999999998876 6899999999999999999999999999999985 789999999999999999
Q ss_pred hhcccccCcHHHHHHHHhCC
Q 013706 82 VWYSIRSEDYATVKTLLEYN 101 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~g 101 (438)
. ..+|.+++++|-+..
T Consensus 581 ~----~F~h~~v~k~L~~~~ 596 (622)
T KOG0506|consen 581 K----HFKHKEVVKLLEEAQ 596 (622)
T ss_pred H----hcCcHHHHHHHHHHh
Confidence 9 778999999987653
No 358
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.35 E-value=1.5e-06 Score=79.24 Aligned_cols=73 Identities=25% Similarity=0.353 Sum_probs=62.9
Q ss_pred CcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 5 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
+--|+.||+.|+++.|++|++ -|.++|+.|....+||.+|+-.||.+++++|+++||-..--...|... ||++
T Consensus 37 f~elceacR~GD~d~v~~LVe----tgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC-~Yga 109 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVE----TGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC-HYGA 109 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHH----hCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh-hhhh
Confidence 456899999999999999999 789999999999999999999999999999999998765555556554 4443
No 359
>PHA00729 NTP-binding motif containing protein
Probab=98.35 E-value=8.8e-07 Score=77.70 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=23.6
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
..+++|+|+||||||++|.++++.+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999999875
No 360
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.34 E-value=1.2e-06 Score=83.82 Aligned_cols=116 Identities=24% Similarity=0.250 Sum_probs=93.7
Q ss_pred HHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCC--cccccCCCCcHHHHHhhccc
Q 013706 9 HVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF--IEAKANNGMTPLHLSVWYSI 86 (438)
Q Consensus 9 h~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~ 86 (438)
.-|+..+++--++..-. .|.++..++.+.+|-||+|+.-|+.++|++++++|.. +++.|..|.|+||.|+
T Consensus 871 l~av~~~D~~klqE~h~----~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa---- 942 (1004)
T KOG0782|consen 871 LRAVLSSDLMKLQETHL----NGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAA---- 942 (1004)
T ss_pred HHHHHhccHHHHHHHHh----cCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHH----
Confidence 34455554433333333 4677888899999999999999999999999999975 5778899999999998
Q ss_pred ccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHh
Q 013706 87 RSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLW 133 (438)
Q Consensus 87 ~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~ 133 (438)
..++..++.+|.+.|+...-.|..|.||- .-+...+.+++..+|..
T Consensus 943 ~~~~r~vc~~lvdagasl~ktd~kg~tp~-eraqqa~d~dlaayle~ 988 (1004)
T KOG0782|consen 943 CQRNRAVCQLLVDAGASLRKTDSKGKTPQ-ERAQQAGDPDLAAYLES 988 (1004)
T ss_pred HhcchHHHHHHHhcchhheecccCCCChH-HHHHhcCCchHHHHHhh
Confidence 67788899999999999999999999998 55666778888877763
No 361
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=2.2e-06 Score=79.34 Aligned_cols=126 Identities=7% Similarity=0.058 Sum_probs=81.1
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHcC---CcC-CC--CEEEeecccccccccccchHHHHHHHHHc--------cCcE
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYMVG---ILP-TD--RVTEVQRTDLVGEFVGHTGPKTRRRIKEA--------EGGI 265 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~~~---~~~-~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~a--------~~~i 265 (438)
...||+|+.|+||+.+|+.+++.+.... ... .. .+..++.. +..+ .-..++.+.+.. ...|
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~i--~vd~Ir~l~~~~~~~~~~~~~~Kv 93 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKDL--SKSEFLSAINKLYFSSFVQSQKKI 93 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCcC--CHHHHHHHHHHhccCCcccCCceE
Confidence 4467999999999999999999884311 000 01 12222200 1101 112344443322 3479
Q ss_pred EEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHH
Q 013706 266 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAK 343 (438)
Q Consensus 266 l~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~ 343 (438)
++||++|.+.. .+.|.||..+++ ...++|+.++. + ..+ -|++++|+ .+++|++++.+++.+
T Consensus 94 vII~~~e~m~~-----------~a~NaLLK~LEEPp~~t~~il~~~~-~-~kl---l~TI~SRc-~~~~f~~l~~~~l~~ 156 (299)
T PRK07132 94 LIIKNIEKTSN-----------SLLNALLKTIEEPPKDTYFLLTTKN-I-NKV---LPTIVSRC-QVFNVKEPDQQKILA 156 (299)
T ss_pred EEEecccccCH-----------HHHHHHHHHhhCCCCCeEEEEEeCC-h-HhC---hHHHHhCe-EEEECCCCCHHHHHH
Confidence 99999998875 445899999997 44555554432 2 333 67789998 899999999999887
Q ss_pred HHHH
Q 013706 344 ILHI 347 (438)
Q Consensus 344 il~~ 347 (438)
.+..
T Consensus 157 ~l~~ 160 (299)
T PRK07132 157 KLLS 160 (299)
T ss_pred HHHH
Confidence 7764
No 362
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.34 E-value=2.5e-06 Score=81.30 Aligned_cols=110 Identities=21% Similarity=0.304 Sum_probs=60.4
Q ss_pred hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC---EEEee
Q 013706 162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR---VTEVQ 238 (438)
Q Consensus 162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~---~~~~~ 238 (438)
-+|.|++++|+.+.-++ +.-..+.+..|+++ +..-||+|.|.||+-|+-|.+.+.+.... +...++. =+-+.
T Consensus 342 PEIyGheDVKKaLLLlL--VGgvd~~~~dGMKI--RGdINicLmGDPGVAKSQLLkyi~rlapR-gvYTTGrGSSGVGLT 416 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLL--VGGVDKSPGDGMKI--RGDINICLMGDPGVAKSQLLKYISRLAPR-GVYTTGRGSSGVGLT 416 (721)
T ss_pred hhhccchHHHHHHHHHh--hCCCCCCCCCCcee--ecceeEEecCCCchhHHHHHHHHHhcCcc-cceecCCCCCccccc
Confidence 36889999998876432 21122333334433 34568999999999999999999875532 1111110 01111
Q ss_pred cccccccccccchHHHHHHHHHccCcEEEEeCcccccCC
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPM 277 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~ 277 (438)
++-.....-||.. .-..++-.|.+||--|||+|++...
T Consensus 417 AAVmkDpvTgEM~-LEGGALVLAD~GICCIDEfDKM~e~ 454 (721)
T KOG0482|consen 417 AAVMKDPVTGEMV-LEGGALVLADGGICCIDEFDKMDES 454 (721)
T ss_pred hhhhcCCCCCeeE-eccceEEEccCceEeehhhhhhhhh
Confidence 1111111111100 0002334567899999999999764
No 363
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.34 E-value=1.9e-06 Score=81.16 Aligned_cols=94 Identities=29% Similarity=0.369 Sum_probs=78.5
Q ss_pred cccCCCChH------HHHHHHcCCHHHHHHHHHCCCCccccc-CCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccC
Q 013706 36 AQNMYGETP------LHMAAKNGCNEAAKLLLAHGAFIEAKA-NNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKD 108 (438)
Q Consensus 36 ~~d~~g~t~------L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d 108 (438)
.+|.+|.|. ||..++.|+.+..--|+..|+++|.-+ ..|.||||.|+ +.|+..-+++|+-+|+|++..|
T Consensus 122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAA----k~Gq~~Q~ElL~vYGAD~~a~d 197 (669)
T KOG0818|consen 122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAA----KAGQILQAELLAVYGADPGAQD 197 (669)
T ss_pred CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHH----hccchhhhhHHhhccCCCCCCC
Confidence 345566654 899999999999888999999999865 47999999999 8899999999999999999999
Q ss_pred CCCCccccccccCCCchhHHHHHHhc
Q 013706 109 NEGKTPLDHLSNGPGSAKLRELLLWH 134 (438)
Q Consensus 109 ~~g~t~l~~~a~~~~~~~~~~lL~~~ 134 (438)
.+|.||+ .+|-..|+.++.+-|...
T Consensus 198 ~~GmtP~-~~AR~~gH~~laeRl~e~ 222 (669)
T KOG0818|consen 198 SSGMTPV-DYARQGGHHELAERLVEI 222 (669)
T ss_pred CCCCcHH-HHHHhcCchHHHHHHHHH
Confidence 9999999 555556776766665543
No 364
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.33 E-value=4.5e-06 Score=79.66 Aligned_cols=238 Identities=20% Similarity=0.229 Sum_probs=119.4
Q ss_pred hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccc
Q 013706 163 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 242 (438)
Q Consensus 163 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 242 (438)
.+.|.+++|+.+.-++ ..-.++.+...+..+..-||||.|.|||-|+-+.+.+-+.. |+- +-.+.-
T Consensus 332 SIfG~~DiKkAiaClL----FgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvs---------PIa-VYTSGK 397 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLL----FGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVS---------PIA-VYTSGK 397 (729)
T ss_pred hhcCchhHHHHHHHHh----hcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcC---------ceE-EEecCC
Confidence 4778888888877542 11122222222333456689999999999999998886532 111 111110
Q ss_pred cccccccchHHHH-----------HHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC------------
Q 013706 243 VGEFVGHTGPKTR-----------RRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------------ 299 (438)
Q Consensus 243 ~~~~~g~~~~~~~-----------~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------------ 299 (438)
-+.-.|-+..-++ .++-.|.|||+-|||+|++-.... -++=+.|+.
T Consensus 398 GSSAAGLTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DR-----------VAIHEAMEQQTISIAKAGITT 466 (729)
T KOG0481|consen 398 GSSAAGLTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDR-----------VAIHEAMEQQTISIAKAGITT 466 (729)
T ss_pred CcccccceeeEEecCCcceEEEecceEEEecCCEEEeehhhccCchhh-----------hHHHHHHHhhhHHHhhhccee
Confidence 0111111111110 123456889999999999976432 122222221
Q ss_pred ---CCEEEEEecCC--hhHH------HHhhhCcCccCCCCcceeCCCCCHHHHHHHH-HHHHhccc----cccc------
Q 013706 300 ---GKVVVIFAGYS--EPMK------RVIASNEGFCRRVTKFFHFNDFNSEELAKIL-HIKMNNQT----EDSL------ 357 (438)
Q Consensus 300 ---~~v~vi~~~~~--~~~~------~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il-~~~l~~~~----~~~~------ 357 (438)
.+--|++|.|+ -.++ .-+.--|.+++|||.++-+.+-..+++-..+ ++.+.-.. ....
T Consensus 467 ~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~ 546 (729)
T KOG0481|consen 467 TLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENE 546 (729)
T ss_pred eecchhhhhhhcCCccccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCC
Confidence 12223333221 0011 0111137899999998888776665543333 33222111 0000
Q ss_pred -------------cccccccccccHHHHHHHHHHHhhHh-------------hhccccccchHHHHHHHHHHhhccccCC
Q 013706 358 -------------LYGFKLHSSCSMDAIAALIEKETTEK-------------QRREMNGGLVDPMLVNARENLDLRLSFD 411 (438)
Q Consensus 358 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~n~~~l~~~~~~a~~~~~~r~~~~ 411 (438)
-++.+..+.++.++-+++.++|..-. ..-|-.+|.|..++..+...|..+++
T Consensus 547 ~ei~~~~~KryI~YcR~kc~PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls-- 624 (729)
T KOG0481|consen 547 GEIPIEKLKRYIQYCRLKCGPRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELS-- 624 (729)
T ss_pred CcccHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCC--
Confidence 02345556677777777766664110 01134455565555544444422222
Q ss_pred CCChhhhhhccHHHHHHHHHHHH
Q 013706 412 CLDTDELRTITLEDLEAGLKLLL 434 (438)
Q Consensus 412 ~~~~~~~~~i~~~d~~~a~~~~~ 434 (438)
.-.|.+|+++|++.++
T Consensus 625 -------~~ate~hV~EA~RLF~ 640 (729)
T KOG0481|consen 625 -------PFATEAHVEEALRLFQ 640 (729)
T ss_pred -------ccccHHHHHHHHHHHh
Confidence 2356777888877765
No 365
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.29 E-value=5.8e-05 Score=68.90 Aligned_cols=163 Identities=12% Similarity=0.201 Sum_probs=92.8
Q ss_pred hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEE--Eeec
Q 013706 162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT--EVQR 239 (438)
Q Consensus 162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~--~~~~ 239 (438)
..+.|..+..+.+.++++.... -+....+++.||.|+|||++.-..-...... +..++ .+++
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~------------~gEsnsviiigprgsgkT~li~~~Ls~~q~~----~E~~l~v~Lng 87 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTIL------------HGESNSVIIIGPRGSGKTILIDTRLSDIQEN----GENFLLVRLNG 87 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHH------------hcCCCceEEEccCCCCceEeeHHHHhhHHhc----CCeEEEEEECc
Confidence 3456777777777777553321 1245679999999999997654432221111 11333 3332
Q ss_pred ccc-------------------cccccccchHHHHHHHHHc-------cCcEEEE-eCcccccC-CCCCCCchhHHHHHH
Q 013706 240 TDL-------------------VGEFVGHTGPKTRRRIKEA-------EGGILFV-DEAYRLIP-MQKADDKDYGIEALE 291 (438)
Q Consensus 240 ~~~-------------------~~~~~g~~~~~~~~~~~~a-------~~~il~i-DEid~l~~-~~~~~~~~~~~~~~~ 291 (438)
.-- ..+-+|.....+..++..- .+.|+|| ||+|-+++ .+| ..+.
T Consensus 88 ~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQ--------tllY 159 (408)
T KOG2228|consen 88 ELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQ--------TLLY 159 (408)
T ss_pred cchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhh--------HHHH
Confidence 210 0122333333444443321 1246666 79999986 444 3445
Q ss_pred HHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcc-eeC-CCCCHHHHHHHHHHHHh
Q 013706 292 EIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKF-FHF-NDFNSEELAKILHIKMN 350 (438)
Q Consensus 292 ~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~-i~~-~~~~~~e~~~il~~~l~ 350 (438)
.|...-+. ..+.+|+.|++-+....+ -....+||... |.+ |+..-++...+++..+.
T Consensus 160 nlfDisqs~r~Piciig~Ttrld~lE~L--EKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 160 NLFDISQSARAPICIIGVTTRLDILELL--EKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred HHHHHHhhcCCCeEEEEeeccccHHHHH--HHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 55555453 568888888776665444 33567799554 554 44556888888888774
No 366
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.27 E-value=1.1e-06 Score=84.33 Aligned_cols=62 Identities=26% Similarity=0.308 Sum_probs=58.3
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCc
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFI 67 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~ 67 (438)
.+|.|+||+||..|++.+.++|+. .|+++..+|.+|+|+|.||-+.|..+|+.+|+++|+..
T Consensus 659 ~~grt~LHLa~~~gnVvl~QLLiW----yg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp~ 720 (749)
T KOG0705|consen 659 GDGRTALHLAARKGNVVLAQLLIW----YGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGCPD 720 (749)
T ss_pred CCCcchhhhhhhhcchhHHHHHHH----hCccceecccCCchhhhhHhhcccHHHHHHHHHcCCCc
Confidence 378999999999999999999997 68999999999999999999999999999999999854
No 367
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.25 E-value=3.2e-06 Score=66.08 Aligned_cols=82 Identities=15% Similarity=0.157 Sum_probs=48.7
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHcC-CcCCCCEEEeec-ccccccccccchHHHHHHHHHccCcEEEEeCcccccCCCC
Q 013706 202 MAFLGNPGTGKTMVARILGRLLYMVG-ILPTDRVTEVQR-TDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQK 279 (438)
Q Consensus 202 ~ll~GppGtGKT~la~~la~~l~~~~-~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~ 279 (438)
|.|+||||+|||++|+.|++.+.... ......+...++ .++.+.|. ...++++||+.......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~--------------~q~vvi~DD~~~~~~~~- 65 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQ--------------GQPVVIIDDFGQDNDGY- 65 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccC--------------CCcEEEEeecCcccccc-
Confidence 57999999999999999999886422 111223322222 22322222 33799999997765431
Q ss_pred CCCchhHHHHHHHHHhhccCCCEEE
Q 013706 280 ADDKDYGIEALEEIMSVMDGGKVVV 304 (438)
Q Consensus 280 ~~~~~~~~~~~~~ll~~~~~~~v~v 304 (438)
.......+++.++.....+
T Consensus 66 ------~~~~~~~l~~l~s~~~~~~ 84 (107)
T PF00910_consen 66 ------NYSDESELIRLISSNPFQP 84 (107)
T ss_pred ------chHHHHHHHHHHhcCCccc
Confidence 1123466777776644333
No 368
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.25 E-value=1.5e-06 Score=83.09 Aligned_cols=90 Identities=28% Similarity=0.301 Sum_probs=80.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhh
Q 013706 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW 83 (438)
Q Consensus 4 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 83 (438)
-.+.||+|+.-|+-++|+++|+|. ....++..|..|.|+||-|+..++..+..+|++.|+.+..+|..|.||-.-|-
T Consensus 899 ~~sllh~a~~tg~~eivkyildh~--p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraq- 975 (1004)
T KOG0782|consen 899 HCSLLHYAAKTGNGEIVKYILDHG--PSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQ- 975 (1004)
T ss_pred hhhHHHHHHhcCChHHHHHHHhcC--CHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHH-
Confidence 468899999999999999999973 34557788899999999999999999999999999999999999999998887
Q ss_pred cccccCcHHHHHHHHh
Q 013706 84 YSIRSEDYATVKTLLE 99 (438)
Q Consensus 84 ~~~~~~~~~~~~~Ll~ 99 (438)
..|..+++.+|-.
T Consensus 976 ---qa~d~dlaayle~ 988 (1004)
T KOG0782|consen 976 ---QAGDPDLAAYLES 988 (1004)
T ss_pred ---hcCCchHHHHHhh
Confidence 7889999888753
No 369
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.22 E-value=3.7e-05 Score=62.71 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=26.7
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI 228 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~ 228 (438)
.+..+.++||||+|||+++..++..+...++
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~ 34 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGY 34 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCc
Confidence 4567999999999999999999999976543
No 370
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.17 E-value=6.3e-06 Score=78.49 Aligned_cols=104 Identities=18% Similarity=0.190 Sum_probs=61.9
Q ss_pred CCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccc-------cccccchHHHHHHHH-HccC-cEE
Q 013706 196 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG-------EFVGHTGPKTRRRIK-EAEG-GIL 266 (438)
Q Consensus 196 ~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~-------~~~g~~~~~~~~~~~-~a~~-~il 266 (438)
...++|+.||||+|+|||+|.-.+...+..... . .++.-.++. ++.|... .+..+.+ -+.+ -+|
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k----~--R~HFh~Fm~~vh~~l~~~~~~~~-~l~~va~~l~~~~~lL 131 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRK----R--RVHFHEFMLDVHSRLHQLRGQDD-PLPQVADELAKESRLL 131 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCcccc----c--cccccHHHHHHHHHHHHHhCCCc-cHHHHHHHHHhcCCEE
Confidence 457899999999999999999999876632111 1 111112211 1122211 1222222 2344 499
Q ss_pred EEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHH
Q 013706 267 FVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMK 314 (438)
Q Consensus 267 ~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~ 314 (438)
.|||++---. ...-++..|+..+=...+++|+|+|..|.+
T Consensus 132 cfDEF~V~Di--------aDAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 132 CFDEFQVTDI--------ADAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred EEeeeeccch--------hHHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 9999964321 123566777777766778888888766654
No 371
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.16 E-value=4.7e-05 Score=73.75 Aligned_cols=146 Identities=14% Similarity=0.136 Sum_probs=73.3
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchH------HHHHHHHHc------------
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGP------KTRRRIKEA------------ 261 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------~~~~~~~~a------------ 261 (438)
.-+||+||+|||||+..+.++++++..-+-...|+-......+.....+.+.. ........+
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~ 190 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDD 190 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccc
Confidence 34779999999999999999999975222222222111122222222222111 111111111
Q ss_pred ---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhcc-C--CCEEEEEecCCh-h---HHHHhhhCcCccCCCCcce
Q 013706 262 ---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD-G--GKVVVIFAGYSE-P---MKRVIASNEGFCRRVTKFF 331 (438)
Q Consensus 262 ---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~-~--~~v~vi~~~~~~-~---~~~~~~~~p~l~~R~~~~i 331 (438)
.+.+|||||+=..+... ..+.+...|+.+- . -.+++|++.... . -++..-.+--..-|+ ..|
T Consensus 191 ~~~~~~liLveDLPn~~~~d-------~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~I 262 (634)
T KOG1970|consen 191 LRTDKKLILVEDLPNQFYRD-------DSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNI 262 (634)
T ss_pred cccCceEEEeeccchhhhhh-------hHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceE
Confidence 12589999985554321 1233333333332 2 234444443211 0 011110010112255 688
Q ss_pred eCCCCCHHHHHHHHHHHHhccc
Q 013706 332 HFNDFNSEELAKILHIKMNNQT 353 (438)
Q Consensus 332 ~~~~~~~~e~~~il~~~l~~~~ 353 (438)
.|.+..+.-+...|++++..+.
T Consensus 263 sFNPIa~T~MKK~L~ric~~e~ 284 (634)
T KOG1970|consen 263 SFNPIAPTIMKKFLKRICRIEA 284 (634)
T ss_pred eecCCcHHHHHHHHHHHHHHhc
Confidence 9999999888888888887764
No 372
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.14 E-value=6e-06 Score=86.18 Aligned_cols=146 Identities=14% Similarity=0.161 Sum_probs=92.6
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccccc-----cc--chHHHHHHH-------HHc-cCcEE
Q 013706 202 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFV-----GH--TGPKTRRRI-------KEA-EGGIL 266 (438)
Q Consensus 202 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-----g~--~~~~~~~~~-------~~a-~~~il 266 (438)
++++||||+|||+.|.+.|++++. .+++.++++.-+++. |+ ....+...+ ..+ ...||
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~-------~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vi 432 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGF-------KVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLI 432 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhccc-------ceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEE
Confidence 689999999999999999999877 788888886554432 22 122232333 111 12599
Q ss_pred EEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEE-ecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHH
Q 013706 267 FVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIF-AGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKIL 345 (438)
Q Consensus 267 ~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~-~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il 345 (438)
++||+|-+.... +..+.++...+....+-+|+ ++..+.. ......|-+..++|+.|+.+.+..-+
T Consensus 433 l~devD~~~~~d--------Rg~v~~l~~l~~ks~~Piv~~cndr~~p------~sr~~~~~~~~l~f~kP~~~~i~~ri 498 (871)
T KOG1968|consen 433 LMDEVDGMFGED--------RGGVSKLSSLCKKSSRPLVCTCNDRNLP------KSRALSRACSDLRFSKPSSELIRSRI 498 (871)
T ss_pred EEeccccccchh--------hhhHHHHHHHHHhccCCeEEEecCCCCc------cccchhhhcceeeecCCcHHHHHhhh
Confidence 999999887511 12334454554443333333 3222211 11123354578999999999999988
Q ss_pred HHHHhccccccccccccccccccHHHHHHHHHHH
Q 013706 346 HIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKE 379 (438)
Q Consensus 346 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (438)
...+..+. ..++...+..+...+
T Consensus 499 ~si~~se~-----------~ki~~~~l~~~s~~~ 521 (871)
T KOG1968|consen 499 MSICKSEG-----------IKISDDVLEEISKLS 521 (871)
T ss_pred hhhhcccc-----------eecCcHHHHHHHHhc
Confidence 88887653 235677888888766
No 373
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=98.13 E-value=8.1e-06 Score=67.69 Aligned_cols=71 Identities=30% Similarity=0.456 Sum_probs=62.7
Q ss_pred CcccccccCCCChHHHHHHHcCCHHHHHHHHHCC-CCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCc
Q 013706 31 KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG-AFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCS 105 (438)
Q Consensus 31 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~ 105 (438)
+.++|++|..|||||+.|++.|..+.+.+|+.+| +.+...|..|.+++.+|- .+|..+++..|.+.-.+..
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlae----k~g~~~fvh~lfe~~~ets 73 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAE----KGGAQAFVHSLFENDRETS 73 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHH----hcChHHHHHHHHHHhccCC
Confidence 4578999999999999999999999999999999 889999999999999998 8899999999887644433
No 374
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.12 E-value=4.6e-05 Score=71.11 Aligned_cols=135 Identities=16% Similarity=0.250 Sum_probs=69.0
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc----cccc---ccccc---------hHHHHHHHHH-
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD----LVGE---FVGHT---------GPKTRRRIKE- 260 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~----~~~~---~~g~~---------~~~~~~~~~~- 260 (438)
....+.++|++|+|||++|+.+++......-.....++.+.... +... .++.. .......+.+
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 97 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLREL 97 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHH
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence 45668899999999999999999875432222112233333221 1110 11111 1122222222
Q ss_pred --ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCC
Q 013706 261 --AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDF 336 (438)
Q Consensus 261 --a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~ 336 (438)
.+.++|+||+++... .+..+...+.. ....+|.||....+.. ..... ...++++.+
T Consensus 98 L~~~~~LlVlDdv~~~~-------------~~~~l~~~~~~~~~~~kilvTTR~~~v~~------~~~~~-~~~~~l~~L 157 (287)
T PF00931_consen 98 LKDKRCLLVLDDVWDEE-------------DLEELREPLPSFSSGSKILVTTRDRSVAG------SLGGT-DKVIELEPL 157 (287)
T ss_dssp HCCTSEEEEEEEE-SHH-------------HH-------HCHHSS-EEEEEESCGGGGT------THHSC-EEEEECSS-
T ss_pred hccccceeeeeeecccc-------------ccccccccccccccccccccccccccccc------ccccc-ccccccccc
Confidence 246899999986543 12223333321 2345555655443321 11111 468999999
Q ss_pred CHHHHHHHHHHHHhcc
Q 013706 337 NSEELAKILHIKMNNQ 352 (438)
Q Consensus 337 ~~~e~~~il~~~l~~~ 352 (438)
+.++..+++.......
T Consensus 158 ~~~ea~~L~~~~~~~~ 173 (287)
T PF00931_consen 158 SEEEALELFKKRAGRK 173 (287)
T ss_dssp -HHHHHHHHHHHHTSH
T ss_pred cccccccccccccccc
Confidence 9999999999887654
No 375
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.12 E-value=1.6e-05 Score=69.06 Aligned_cols=24 Identities=33% Similarity=0.299 Sum_probs=20.6
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHH
Q 013706 202 MAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 202 ~ll~GppGtGKT~la~~la~~l~~ 225 (438)
++++||||||||+++..++.....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~ 25 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA 25 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999988776543
No 376
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=98.12 E-value=2.8e-06 Score=87.96 Aligned_cols=75 Identities=39% Similarity=0.471 Sum_probs=40.8
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCcccccc
Q 013706 40 YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHL 118 (438)
Q Consensus 40 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~ 118 (438)
.|.|+||.|+..|..-.+++|+++|+++|..|..|.+|||.+. ..|+...+..|+.+|++++..+..|.+|++++
T Consensus 655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~----~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a 729 (785)
T KOG0521|consen 655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHAT----ASGHTSIACLLLKRGADPNAFDPDGKLPLDIA 729 (785)
T ss_pred cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhh----hhcccchhhhhccccccccccCccCcchhhHH
Confidence 3455555555555555555555555555555555555555554 45555555555555555555555555555443
No 377
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.11 E-value=8.5e-06 Score=74.49 Aligned_cols=84 Identities=25% Similarity=0.267 Sum_probs=73.4
Q ss_pred hHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCC
Q 013706 43 TPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGP 122 (438)
Q Consensus 43 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~ 122 (438)
--|..||+.|..+.++.|++.|.++|..|....+||.+|+ ..||.+++++|++.||-..--..+|..++ +.+-
T Consensus 38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAs----LcGHe~vvklLLenGAiC~rdtf~G~RC~-YgaL-- 110 (516)
T KOG0511|consen 38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLAS----LCGHEDVVKLLLENGAICSRDTFDGDRCH-YGAL-- 110 (516)
T ss_pred HHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHH----HcCcHHHHHHHHHcCCcccccccCcchhh-hhhh--
Confidence 3589999999999999999999999999999999999999 78999999999999999988888898887 6554
Q ss_pred CchhHHHHHHhc
Q 013706 123 GSAKLRELLLWH 134 (438)
Q Consensus 123 ~~~~~~~lL~~~ 134 (438)
+..+.+.|+++
T Consensus 111 -nd~IR~mllsy 121 (516)
T KOG0511|consen 111 -NDRIRRMLLSY 121 (516)
T ss_pred -hHHHHHHHHHH
Confidence 34566666654
No 378
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.09 E-value=1.1e-05 Score=70.58 Aligned_cols=100 Identities=22% Similarity=0.291 Sum_probs=57.1
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccc----ccccccchHHHHHHHHH------------ccC
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV----GEFVGHTGPKTRRRIKE------------AEG 263 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~------------a~~ 263 (438)
...++.||||||||++.+.+.+.+...+. .++-+.++.-. .+..|.....+.+.+.. ...
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~----~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~ 94 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGK----RVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKK 94 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT------EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TST
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCC----eEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcc
Confidence 45778999999999999999988876432 55555554311 11112212222222211 223
Q ss_pred cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHH
Q 013706 264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMK 314 (438)
Q Consensus 264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~ 314 (438)
.+|+|||+..+.. ..+..|+..+......+|+.+.+.-+.
T Consensus 95 ~vliVDEasmv~~-----------~~~~~ll~~~~~~~~klilvGD~~QL~ 134 (196)
T PF13604_consen 95 DVLIVDEASMVDS-----------RQLARLLRLAKKSGAKLILVGDPNQLP 134 (196)
T ss_dssp SEEEESSGGG-BH-----------HHHHHHHHHS-T-T-EEEEEE-TTSHH
T ss_pred cEEEEecccccCH-----------HHHHHHHHHHHhcCCEEEEECCcchhc
Confidence 7999999977764 456778888877555566665555443
No 379
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.09 E-value=0.00017 Score=67.03 Aligned_cols=187 Identities=18% Similarity=0.185 Sum_probs=106.4
Q ss_pred CCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccc----------c-----cccccc----hHHHH--
Q 013706 197 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV----------G-----EFVGHT----GPKTR-- 255 (438)
Q Consensus 197 ~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~----------~-----~~~g~~----~~~~~-- 255 (438)
..|.++.+||..|||||.+.|.+-+.++. +.+.+++-+.. . .+-|.. ..++.
T Consensus 28 ~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-------~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~ 100 (438)
T KOG2543|consen 28 TIPSIVHIYGHSGTGKTYLVRQLLRKLNL-------ENVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDF 100 (438)
T ss_pred ccceeEEEeccCCCchhHHHHHHHhhcCC-------cceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHH
Confidence 35777899999999999999999887754 44555543311 1 111110 01111
Q ss_pred -HHHHH---c----cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHh---hccCCCEEEEEecCChhHHHHhhhCcCcc
Q 013706 256 -RRIKE---A----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS---VMDGGKVVVIFAGYSEPMKRVIASNEGFC 324 (438)
Q Consensus 256 -~~~~~---a----~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~---~~~~~~v~vi~~~~~~~~~~~~~~~p~l~ 324 (438)
..|++ + +.-.|++|.+|.+-.. ....++.|++ .++...++++.....-+.... .+ .
T Consensus 101 i~~l~q~~~~t~~d~~~~liLDnad~lrD~--------~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~--~n---~ 167 (438)
T KOG2543|consen 101 IYLLVQWPAATNRDQKVFLILDNADALRDM--------DAILLQCLFRLYELLNEPTIVIILSAPSCEKQYL--IN---T 167 (438)
T ss_pred HHHHHhhHHhhccCceEEEEEcCHHhhhcc--------chHHHHHHHHHHHHhCCCceEEEEeccccHHHhh--cc---c
Confidence 22333 1 2357888999999632 2234444444 444566666665333222211 01 1
Q ss_pred CCC-CcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706 325 RRV-TKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 403 (438)
Q Consensus 325 ~R~-~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~ 403 (438)
+-+ ...+.||.|+.+|..+|+.+---. ....+..+..+.-.+..=...-....+++.++..+..+
T Consensus 168 g~~~i~~l~fP~Ys~~e~~~Il~~~~p~--------------~r~~~~ya~fl~v~l~vF~~~crd~~eL~~~~~~~wpk 233 (438)
T KOG2543|consen 168 GTLEIVVLHFPQYSVEETQVILSRDNPG--------------KRKLDVYAQFLHVLLQVFYMACRDVNELRSLISLAWPK 233 (438)
T ss_pred CCCCceEEecCCCCHHHHHHHHhcCCcc--------------ccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 222 468999999999999999753221 11233333333322211111123567888888888889
Q ss_pred hhccccCCCCChhh
Q 013706 404 LDLRLSFDCLDTDE 417 (438)
Q Consensus 404 ~~~r~~~~~~~~~~ 417 (438)
..+++.++.+++.+
T Consensus 234 y~epi~~~~i~~~d 247 (438)
T KOG2543|consen 234 YCEPITKGKIDPTD 247 (438)
T ss_pred hccccccCCCChhH
Confidence 88888877765443
No 380
>PRK08118 topology modulation protein; Reviewed
Probab=98.07 E-value=3.7e-05 Score=65.30 Aligned_cols=26 Identities=35% Similarity=0.669 Sum_probs=23.5
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
+.|++.||||+||||+|+.|++.++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~ 27 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNI 27 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46899999999999999999998765
No 381
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.06 E-value=6.1e-06 Score=78.80 Aligned_cols=86 Identities=31% Similarity=0.419 Sum_probs=67.9
Q ss_pred hHHHHHHHcCCHHHHHHHH--HCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCcccccccc
Q 013706 43 TPLHMAAKNGCNEAAKLLL--AHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN 120 (438)
Q Consensus 43 t~L~~A~~~g~~~~v~~Ll--~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~ 120 (438)
-|||+++.....+-...++ +.+..++..|..|.||||+|+ .-|+...++.|+.+|+++..+|+.||+|||-+.+
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV----~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~ 97 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAV----RLGHVEAARILLSAGADVSIKNNEGWSPLHEAVS 97 (560)
T ss_pred cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHH----HhcCHHHHHHHHhcCCCccccccccccHHHHHHH
Confidence 4699999887766554433 345567889999999999999 7899999999999999999999999999966666
Q ss_pred CCCchhHHHHHH
Q 013706 121 GPGSAKLRELLL 132 (438)
Q Consensus 121 ~~~~~~~~~lL~ 132 (438)
.++...+.++|.
T Consensus 98 ~g~~q~i~~vlr 109 (560)
T KOG0522|consen 98 TGNEQIITEVLR 109 (560)
T ss_pred cCCHHHHHHHHH
Confidence 554444444444
No 382
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.06 E-value=0.00018 Score=70.17 Aligned_cols=30 Identities=33% Similarity=0.566 Sum_probs=26.1
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 227 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~ 227 (438)
+|..++|+||||+|||+++..+|..+...+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g 123 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKG 123 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 567789999999999999999999886544
No 383
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.03 E-value=0.00025 Score=67.47 Aligned_cols=82 Identities=20% Similarity=0.260 Sum_probs=58.9
Q ss_pred cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCc----------C-ccCCCCccee
Q 013706 264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNE----------G-FCRRVTKFFH 332 (438)
Q Consensus 264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p----------~-l~~R~~~~i~ 332 (438)
-|+||||+|++.+ +...+++..+-..++-.++++|.+..++.+...+...- . |..-|+..+.
T Consensus 174 iViiIDdLDR~~~-------~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~~ 246 (325)
T PF07693_consen 174 IVIIIDDLDRCSP-------EEIVELLEAIKLLLDFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKIIQVPFS 246 (325)
T ss_pred EEEEEcchhcCCc-------HHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhhcCeEEE
Confidence 6999999999975 34456666666667778888888877666665443321 1 2334588899
Q ss_pred CCCCCHHHHHHHHHHHHhcc
Q 013706 333 FNDFNSEELAKILHIKMNNQ 352 (438)
Q Consensus 333 ~~~~~~~e~~~il~~~l~~~ 352 (438)
+|+++..+...++...+.+.
T Consensus 247 lP~~~~~~~~~~~~~~~~~~ 266 (325)
T PF07693_consen 247 LPPPSPSDLERYLNELLESL 266 (325)
T ss_pred eCCCCHHHHHHHHHHHHHHh
Confidence 99999999998888876554
No 384
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.02 E-value=1.8e-05 Score=67.63 Aligned_cols=36 Identities=28% Similarity=0.584 Sum_probs=28.2
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE 245 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 245 (438)
.++|.||||+||||+|+.|++.+ ++..++..++...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~---------~i~hlstgd~~r~ 37 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL---------GLPHLDTGDILRA 37 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---------CCcEEcHhHHhHh
Confidence 58999999999999999999974 4556665554433
No 385
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=98.01 E-value=2.9e-05 Score=66.99 Aligned_cols=111 Identities=21% Similarity=0.291 Sum_probs=66.1
Q ss_pred CCCCceEEecCCCCCHHHHHHHHHHHHHHcCC--cCCCCEEEeec-ccccccccccchHH----------------HHHH
Q 013706 197 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGI--LPTDRVTEVQR-TDLVGEFVGHTGPK----------------TRRR 257 (438)
Q Consensus 197 ~~~~~~ll~GppGtGKT~la~~la~~l~~~~~--~~~~~~~~~~~-~~~~~~~~g~~~~~----------------~~~~ 257 (438)
..+.+.|+.||||||||++.|-||+.+.. ++ +....+..++. +++.+-..|...-. +-.+
T Consensus 135 ~g~lntLiigpP~~GKTTlLRdiaR~~s~-g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmma 213 (308)
T COG3854 135 NGWLNTLIIGPPQVGKTTLLRDIARLLSD-GINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMA 213 (308)
T ss_pred cCceeeEEecCCCCChHHHHHHHHHHhhc-cccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHH
Confidence 36788999999999999999999997753 21 11123333333 34444344432111 1123
Q ss_pred HHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCc
Q 013706 258 IKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGF 323 (438)
Q Consensus 258 ~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l 323 (438)
++...+-|+++|||..... ..++++.+..+ |-+|.+..-+.++.+.. .|+|
T Consensus 214 Irsm~PEViIvDEIGt~~d-------------~~A~~ta~~~G-Vkli~TaHG~~iedl~k-rp~l 264 (308)
T COG3854 214 IRSMSPEVIIVDEIGTEED-------------ALAILTALHAG-VKLITTAHGNGIEDLIK-RPTL 264 (308)
T ss_pred HHhcCCcEEEEeccccHHH-------------HHHHHHHHhcC-cEEEEeeccccHHHhhc-ChhH
Confidence 4455678999999965431 13455555544 67777777666665543 3444
No 386
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.99 E-value=0.00012 Score=64.41 Aligned_cols=177 Identities=19% Similarity=0.202 Sum_probs=97.3
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccc-----ccccccc--c--hHHHH-----------HHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL-----VGEFVGH--T--GPKTR-----------RRI 258 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~-----~~~~~g~--~--~~~~~-----------~~~ 258 (438)
..-+.++|+.|+|||++.|++...+....+ ..+.++...+ ...++-+ + ...+. ..+
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s~~~d~~----~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~ 126 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLASLNEDQV----AVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALV 126 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHhcCCCce----EEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHH
Confidence 345779999999999999977665542111 2223333221 1111111 1 11111 122
Q ss_pred HHcc-CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCChhHHHHhhhCc---CccCCCCccee
Q 013706 259 KEAE-GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNE---GFCRRVTKFFH 332 (438)
Q Consensus 259 ~~a~-~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p---~l~~R~~~~i~ 332 (438)
.+.+ +-++++||++.+..+.- +.+.-|...-++ +..-++..+.+.-...+ ..| .+..|++..|+
T Consensus 127 ~~g~r~v~l~vdEah~L~~~~l--------e~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~l--r~~~l~e~~~R~~ir~~ 196 (269)
T COG3267 127 KKGKRPVVLMVDEAHDLNDSAL--------EALRLLTNLEEDSSKLLSIVLIGQPKLRPRL--RLPVLRELEQRIDIRIE 196 (269)
T ss_pred HhCCCCeEEeehhHhhhChhHH--------HHHHHHHhhcccccCceeeeecCCcccchhh--chHHHHhhhheEEEEEe
Confidence 2223 37999999999875321 333333333322 33445555544332211 123 33459977799
Q ss_pred CCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 333 FNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 333 ~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
++|++.++....++..++.-.. -.+-++.+++..+....- |--+.+.+++..|...+
T Consensus 197 l~P~~~~~t~~yl~~~Le~a~~--------~~~l~~~~a~~~i~~~sq-------g~P~lin~~~~~Al~~a 253 (269)
T COG3267 197 LPPLTEAETGLYLRHRLEGAGL--------PEPLFSDDALLLIHEASQ-------GIPRLINNLATLALDAA 253 (269)
T ss_pred cCCcChHHHHHHHHHHHhccCC--------CcccCChhHHHHHHHHhc-------cchHHHHHHHHHHHHHH
Confidence 9999999999999999987532 123355666666655442 22355666666665544
No 387
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.99 E-value=2.1e-05 Score=69.28 Aligned_cols=24 Identities=38% Similarity=0.559 Sum_probs=21.2
Q ss_pred CCCceEEecCCCCCHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGR 221 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~ 221 (438)
.+..+||||+||+|||++|+.++.
T Consensus 11 ~~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 11 IPNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHhcCC
Confidence 456799999999999999999963
No 388
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=97.98 E-value=4.4e-05 Score=74.81 Aligned_cols=106 Identities=19% Similarity=0.223 Sum_probs=56.8
Q ss_pred hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC---C----E
Q 013706 162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD---R----V 234 (438)
Q Consensus 162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~---~----~ 234 (438)
-.+.|+..+|..+.-.+- .-..+..+..-..+...|+||.|.|||||+-+.|.+++.... .++.++ . .
T Consensus 449 PsIyGh~~VK~AvAlaLf----GGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~R-AV~tTGqGASavGLT 523 (854)
T KOG0477|consen 449 PSIYGHEDVKRAVALALF----GGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPR-AVFTTGQGASAVGLT 523 (854)
T ss_pred chhhchHHHHHHHHHHHh----cCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcc-eeEeccCCcccccee
Confidence 356788877776653211 000000011111234568999999999999999999886532 111110 0 0
Q ss_pred EEeecccccccccccchHHHHHHHHHccCcEEEEeCcccccCC
Q 013706 235 TEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPM 277 (438)
Q Consensus 235 ~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~ 277 (438)
..+...-+..+|.=| ..++-.|.+||-+|||+|++...
T Consensus 524 a~v~KdPvtrEWTLE-----aGALVLADkGvClIDEFDKMndq 561 (854)
T KOG0477|consen 524 AYVRKDPVTREWTLE-----AGALVLADKGVCLIDEFDKMNDQ 561 (854)
T ss_pred EEEeeCCccceeeec-----cCeEEEccCceEEeehhhhhccc
Confidence 011111112223211 12345577899999999999764
No 389
>PRK13695 putative NTPase; Provisional
Probab=97.96 E-value=0.00014 Score=62.39 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.0
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.++|.|+||+|||++++.++..+..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999887753
No 390
>PRK10536 hypothetical protein; Provisional
Probab=97.95 E-value=5.3e-05 Score=67.74 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.4
Q ss_pred CceEEecCCCCCHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l 223 (438)
..+++.||+|||||++|.+++...
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~~ 98 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAEA 98 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999999999853
No 391
>PRK04296 thymidine kinase; Provisional
Probab=97.94 E-value=2.8e-05 Score=67.60 Aligned_cols=26 Identities=12% Similarity=-0.114 Sum_probs=21.7
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHHc
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYMV 226 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~~ 226 (438)
-.+++||||+|||+++..++..+...
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~ 29 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEER 29 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHc
Confidence 36889999999999999998877443
No 392
>PHA02624 large T antigen; Provisional
Probab=97.92 E-value=1.7e-05 Score=78.72 Aligned_cols=113 Identities=18% Similarity=0.144 Sum_probs=64.8
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccc-cccccccchHHHHHHHHHccCcEEEEeCcccccCCC
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL-VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQ 278 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~ 278 (438)
..++|+||||||||+++.+|.+.++. ..+.++.+.- ..-|.| -.+...+.+||++-.-....
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G-------~vlsVNsPt~ks~FwL~----------pl~D~~~~l~dD~t~~~~~~ 494 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGG-------KSLNVNCPPDKLNFELG----------CAIDQFMVVFEDVKGQPADN 494 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCC-------eEEEeeCCcchhHHHhh----------hhhhceEEEeeecccccccc
Confidence 36899999999999999999998843 4445553321 111221 22345788999985443311
Q ss_pred CCCCchhHHHHHHHHHhhccCC-CE---------------EEEEecCChhHHHHhhhCcCccCCCCcceeCCC
Q 013706 279 KADDKDYGIEALEEIMSVMDGG-KV---------------VVIFAGYSEPMKRVIASNEGFCRRVTKFFHFND 335 (438)
Q Consensus 279 ~~~~~~~~~~~~~~ll~~~~~~-~v---------------~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~ 335 (438)
..-++..+-.-+.-|-..+|++ .| -.|.|+|.-.+ +..+.-||..++.|..
T Consensus 495 ~~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ney~i------P~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 495 KDLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNEYLI------PQTVKARFAKVLDFKP 561 (647)
T ss_pred ccCCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecCccc------chhHHHHHHHhccccc
Confidence 1001111112235666777775 22 34445443332 4556669988888854
No 393
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.92 E-value=1e-05 Score=83.87 Aligned_cols=78 Identities=32% Similarity=0.436 Sum_probs=73.3
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
+.|.|+||.|+..|..-.+++|++ .|+++|..|..|+||||.+...|+...+..|+++|++.++.+..|.+||++|
T Consensus 654 ~~~~s~lh~a~~~~~~~~~e~ll~----~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a 729 (785)
T KOG0521|consen 654 CIGCSLLHVAVGTGDSGAVELLLQ----NGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIA 729 (785)
T ss_pred hcccchhhhhhccchHHHHHHHHh----cCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHH
Confidence 468999999999999999999999 7889999999999999999999999999999999999999999999999999
Q ss_pred hh
Q 013706 82 VW 83 (438)
Q Consensus 82 ~~ 83 (438)
..
T Consensus 730 ~~ 731 (785)
T KOG0521|consen 730 ME 731 (785)
T ss_pred hh
Confidence 73
No 394
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.91 E-value=2.8e-05 Score=65.90 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=21.7
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
+++|+|+||+||||+.+.+.+.+..
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhc
Confidence 5899999999999999999999854
No 395
>PRK07261 topology modulation protein; Provisional
Probab=97.87 E-value=4.7e-05 Score=64.95 Aligned_cols=102 Identities=17% Similarity=0.235 Sum_probs=60.0
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHccCcEEEEeCcccccCCCCC
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKA 280 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~ 280 (438)
.+++.|+||+||||+|+.++..++. +.+..+.-.....| +
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~-------~~i~~D~~~~~~~~--------------------------------~- 41 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNC-------PVLHLDTLHFQPNW--------------------------------Q- 41 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCC-------CeEecCCEEecccc--------------------------------c-
Confidence 4889999999999999999986643 44333211100000 0
Q ss_pred CCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhc
Q 013706 281 DDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNN 351 (438)
Q Consensus 281 ~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~ 351 (438)
... ..+.+..+...+.++. .||=+++.... .+....+++.+|.+..|...-+..++++.+..
T Consensus 42 -~~~-~~~~~~~~~~~~~~~~-wIidg~~~~~~------~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~~ 103 (171)
T PRK07261 42 -ERD-DDDMIADISNFLLKHD-WIIDGNYSWCL------YEERMQEADQIIFLNFSRFNCLYRAFKRYLKY 103 (171)
T ss_pred -cCC-HHHHHHHHHHHHhCCC-EEEcCcchhhh------HHHHHHHCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence 000 0122333344455555 44444443322 12234477889999999888899999988863
No 396
>PF14516 AAA_35: AAA-like domain
Probab=97.86 E-value=0.00085 Score=63.72 Aligned_cols=140 Identities=19% Similarity=0.194 Sum_probs=81.8
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc----------c--------ccc----------
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE----------F--------VGH---------- 249 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~----------~--------~g~---------- 249 (438)
++..+.+.||..+|||++...+.+.+...++ ..+.++...+-.. + ++-
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~----~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~ 105 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGY----RCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDE 105 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCC----EEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHH
Confidence 4567889999999999999999888866544 3444444332110 0 000
Q ss_pred ---chHHHHHHHHH------ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-------CCEEEEEecCChhH
Q 013706 250 ---TGPKTRRRIKE------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-------GKVVVIFAGYSEPM 313 (438)
Q Consensus 250 ---~~~~~~~~~~~------a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-------~~v~vi~~~~~~~~ 313 (438)
........|++ .++-||||||+|.+.... ....+.+..|-...+. .++.+|++..+...
T Consensus 106 ~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~-----~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~ 180 (331)
T PF14516_consen 106 EIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP-----QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDY 180 (331)
T ss_pred hcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCc-----chHHHHHHHHHHHHHhcccCcccceEEEEEecCcccc
Confidence 11111222322 145799999999998632 2223444444444332 34666666654433
Q ss_pred HHHhhh-CcCccCCCCcceeCCCCCHHHHHHHHHHHH
Q 013706 314 KRVIAS-NEGFCRRVTKFFHFNDFNSEELAKILHIKM 349 (438)
Q Consensus 314 ~~~~~~-~p~l~~R~~~~i~~~~~~~~e~~~il~~~l 349 (438)
.. ... ..++ .+...|++++++.+|...+++.+-
T Consensus 181 ~~-~~~~~SPF--NIg~~i~L~~Ft~~ev~~L~~~~~ 214 (331)
T PF14516_consen 181 II-LDINQSPF--NIGQPIELPDFTPEEVQELAQRYG 214 (331)
T ss_pred cc-cCCCCCCc--ccccceeCCCCCHHHHHHHHHhhh
Confidence 21 111 1223 446789999999999999887653
No 397
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.86 E-value=5.5e-05 Score=72.18 Aligned_cols=82 Identities=21% Similarity=0.263 Sum_probs=52.6
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHH-HHHcCCcCCCCEEEeecccccccccccchHHHHHHHH-HccCcEEEEeCccccc
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRL-LYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK-EAEGGILFVDEAYRLI 275 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~-l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~a~~~il~iDEid~l~ 275 (438)
...|+++.||||||||.+|.+++.. ....| -..+.+.++.. ... +.+. -++.-+|+|||+..+.
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a~~sG-------~f~T~a~Lf~~----L~~---~~lg~v~~~DlLI~DEvgylp 273 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVILISG-------GTITVAKLFYN----IST---RQIGLVGRWDVVAFDEVATLK 273 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHHHHcC-------CcCcHHHHHHH----HHH---HHHhhhccCCEEEEEcCCCCc
Confidence 5679999999999999999999876 23222 11222333222 111 1222 2355899999998876
Q ss_pred CCCCCCCchhHHHHHHHHHhhccCC
Q 013706 276 PMQKADDKDYGIEALEEIMSVMDGG 300 (438)
Q Consensus 276 ~~~~~~~~~~~~~~~~~ll~~~~~~ 300 (438)
-..+ .+.++.|...|+++
T Consensus 274 ~~~~-------~~~v~imK~yMesg 291 (449)
T TIGR02688 274 FAKP-------KELIGILKNYMESG 291 (449)
T ss_pred CCch-------HHHHHHHHHHHHhC
Confidence 5433 35678888888763
No 398
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.85 E-value=0.00024 Score=78.83 Aligned_cols=52 Identities=21% Similarity=0.355 Sum_probs=37.9
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.+++++|.+...+++..++. .......-+-++||+|+||||+|+++++.+..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~--------------l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLH--------------LESEEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred ccccccchHHHHHHHHHHHc--------------cccCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 35678888877777776532 11224456779999999999999999887643
No 399
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.85 E-value=2.5e-05 Score=69.69 Aligned_cols=65 Identities=29% Similarity=0.243 Sum_probs=48.2
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHc--cCcEEEEeCcccccC
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIP 276 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a--~~~il~iDEid~l~~ 276 (438)
..+-.++||+|||||.+++.+|+.++. .++.+++++-.+. ..+.++|.-+ .|+-+.+||++++..
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~-------~~~vfnc~~~~~~------~~l~ril~G~~~~GaW~cfdefnrl~~ 98 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGR-------FVVVFNCSEQMDY------QSLSRILKGLAQSGAWLCFDEFNRLSE 98 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT---------EEEEETTSSS-H------HHHHHHHHHHHHHT-EEEEETCCCSSH
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCC-------eEEEecccccccH------HHHHHHHHHHhhcCchhhhhhhhhhhH
Confidence 356678999999999999999998887 8888998875432 3445555432 579999999999974
No 400
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.84 E-value=0.00016 Score=69.45 Aligned_cols=147 Identities=20% Similarity=0.163 Sum_probs=72.7
Q ss_pred ceEEecCCCCCHHHHHHHHHHHH--HHcCCcCCCCEEEeecccc--cccccccc---------hHHHHHHHHHcc-----
Q 013706 201 HMAFLGNPGTGKTMVARILGRLL--YMVGILPTDRVTEVQRTDL--VGEFVGHT---------GPKTRRRIKEAE----- 262 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l--~~~~~~~~~~~~~~~~~~~--~~~~~g~~---------~~~~~~~~~~a~----- 262 (438)
-+++.|.||||||.+|-.+++.+ ...+ ....++..+.+.. +...+... .......+....
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~--~~~~~l~~n~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEG--KKVLYLCGNHPLRNKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDKE 80 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccC--CceEEEEecchHHHHHHHHHhhhcccchhhhhhhhhHHHHhhccccccc
Confidence 47899999999999999999988 2211 1122222222211 11111111 112222233222
Q ss_pred ---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecC-----Chh------HHHHhhhCcCccCC-C
Q 013706 263 ---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY-----SEP------MKRVIASNEGFCRR-V 327 (438)
Q Consensus 263 ---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~-----~~~------~~~~~~~~p~l~~R-~ 327 (438)
.-|||+||++.|..+....... .-.+.|...++..+++|++-.. +.. +..+...-+.-... |
T Consensus 81 ~~~~DviivDEAqrl~~~~~~~~~~---~~~~~L~~i~~~~kv~v~f~D~~Q~i~~~e~~~~~~l~~~~~~~~~~~~~~~ 157 (352)
T PF09848_consen 81 KNKYDVIIVDEAQRLRTKGDQYNNF---SEPNQLDEIIKRAKVVVFFYDENQSIRPSEIGTLENLEEIAENLGIEVRHFF 157 (352)
T ss_pred CCcCCEEEEehhHhhhhcccccccc---ccHHHHHHHHhcCCEEEEEEccccEeecccCCCHHHHHHHHHhcCCccccCc
Confidence 3899999999998843210000 1125566666665565555431 111 22222111211111 1
Q ss_pred CcceeCCCCCHHHHHHHHHHHHhcc
Q 013706 328 TKFFHFNDFNSEELAKILHIKMNNQ 352 (438)
Q Consensus 328 ~~~i~~~~~~~~e~~~il~~~l~~~ 352 (438)
...-.|.....++..+.++..+...
T Consensus 158 ~L~~q~R~~~~~~~~~wI~~ll~~~ 182 (352)
T PF09848_consen 158 ELKTQFRCHGSKEYIDWIDNLLDNK 182 (352)
T ss_pred CcCcceecCCCHHHHHHHHHHHhcc
Confidence 2333344444577788888888654
No 401
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.84 E-value=9.9e-05 Score=65.35 Aligned_cols=108 Identities=21% Similarity=0.258 Sum_probs=57.6
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc--------c----cc-----------cc---h
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE--------F----VG-----------HT---G 251 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~--------~----~g-----------~~---~ 251 (438)
...-++++||||+|||+++..++......+ ...+.++...+... + .+ +. -
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g----~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQG----KKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC----CeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 344578999999999999999987664332 24444444321000 0 00 00 1
Q ss_pred HHHHHHHHHccCcEEEEeCcccccCCC-CCCCch---hHHHHHHHHHhhccCCCEEEEEecC
Q 013706 252 PKTRRRIKEAEGGILFVDEAYRLIPMQ-KADDKD---YGIEALEEIMSVMDGGKVVVIFAGY 309 (438)
Q Consensus 252 ~~~~~~~~~a~~~il~iDEid~l~~~~-~~~~~~---~~~~~~~~ll~~~~~~~v~vi~~~~ 309 (438)
..+...+.+....+|+||-+..+.... ++...+ ...+.+..|.......++.+++++.
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~ 148 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQ 148 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence 112222333356899999999886422 211111 1122233444444566777777753
No 402
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.82 E-value=2.7e-05 Score=76.87 Aligned_cols=56 Identities=23% Similarity=0.344 Sum_probs=42.1
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
-|++..|++.++++|.+.+..... +. .....-++|.||||+|||+||+.|++.+..
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~-------gl---~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQ-------GL---EEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHH-------hc---CCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 477889999999998887532211 11 123456889999999999999999998854
No 403
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.81 E-value=0.00015 Score=69.48 Aligned_cols=107 Identities=16% Similarity=0.207 Sum_probs=64.8
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc------ccc----------c-chHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE------FVG----------H-TGPKTRRRIKE 260 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~------~~g----------~-~~~~~~~~~~~ 260 (438)
+..-++++||||+|||+++..++..+...+ .+.+.++..+...+ .+| + ....+.+.++.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g----~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRG----GKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcC----CeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 445688999999999999999988765422 24444444321111 111 1 11234444555
Q ss_pred ccCcEEEEeCcccccCCCCC-C--CchhHHHHHHHHHhhccCCCEEEEEec
Q 013706 261 AEGGILFVDEAYRLIPMQKA-D--DKDYGIEALEEIMSVMDGGKVVVIFAG 308 (438)
Q Consensus 261 a~~~il~iDEid~l~~~~~~-~--~~~~~~~~~~~ll~~~~~~~v~vi~~~ 308 (438)
.+..+|+||++..+...... . +....++++..|........+.+++++
T Consensus 157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvg 207 (372)
T cd01121 157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVG 207 (372)
T ss_pred cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 56799999999988654321 1 123345666777777776666666664
No 404
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=97.80 E-value=7.1e-05 Score=62.22 Aligned_cols=66 Identities=18% Similarity=0.119 Sum_probs=58.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCC-cccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccC
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDK-VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN 72 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~ 72 (438)
.|||||++|+..|+.+.+.+|+. .| +.+...|..|.+++-+|-..|+.++++.|.++..+....+.
T Consensus 11 fgWTalmcaa~eg~~eavsyllg----rg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~n 77 (223)
T KOG2384|consen 11 FGWTALMCAAMEGSNEAVSYLLG----RGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMN 77 (223)
T ss_pred hcchHHHHHhhhcchhHHHHHhc----cCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCccc
Confidence 58999999999999999999999 56 88999999999999999999999999999998665544443
No 405
>PHA02774 E1; Provisional
Probab=97.80 E-value=5.6e-05 Score=74.77 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=23.0
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
..++|+||||||||++|-+|.+.+.
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999999874
No 406
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.78 E-value=1.8e-05 Score=63.31 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=21.8
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHH
Q 013706 202 MAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 202 ~ll~GppGtGKT~la~~la~~l~~ 225 (438)
+++.||||+||||+|+.|++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~ 25 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGF 25 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Confidence 689999999999999999998753
No 407
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.78 E-value=0.0004 Score=67.55 Aligned_cols=119 Identities=21% Similarity=0.213 Sum_probs=70.4
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCC
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPM 277 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~ 277 (438)
-++++||.+||||++.+.+.+.+.. ..+.++..+.......- ......+.+. +...+|||||+.+-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~-------~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~~- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLE-------EIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVPD- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCc-------ceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCchh-
Confidence 7889999999999999888775432 24555555544332211 1112222222 337999999987742
Q ss_pred CCCCCchhHHHHHHHHHhhccCCCE-EEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHH
Q 013706 278 QKADDKDYGIEALEEIMSVMDGGKV-VVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAK 343 (438)
Q Consensus 278 ~~~~~~~~~~~~~~~ll~~~~~~~v-~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~ 343 (438)
-...+-...|.+.. ++|.+++..... ...-+.|.+|. ..+.+.|++..|...
T Consensus 109 -----------W~~~lk~l~d~~~~~v~itgsss~ll~--~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 109 -----------WERALKYLYDRGNLDVLITGSSSSLLS--KEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred -----------HHHHHHHHHccccceEEEECCchhhhc--cchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 22445555565543 333333322222 11245677885 889999999988754
No 408
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.77 E-value=0.0005 Score=65.52 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=23.4
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
....++|.||+|+|||+++..||..+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999998763
No 409
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.76 E-value=0.00017 Score=71.09 Aligned_cols=107 Identities=17% Similarity=0.241 Sum_probs=64.3
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccc------cc-----------cchHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF------VG-----------HTGPKTRRRIKE 260 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~------~g-----------~~~~~~~~~~~~ 260 (438)
+..-++++||||+|||+++..++......+ .+++.++..+...+. +| .....+.+.+++
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g----~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAAAG----GKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhcC----CeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 445688999999999999999988764322 244555543322111 11 112233344444
Q ss_pred ccCcEEEEeCcccccCCCCCC---CchhHHHHHHHHHhhccCCCEEEEEec
Q 013706 261 AEGGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDGGKVVVIFAG 308 (438)
Q Consensus 261 a~~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~~~v~vi~~~ 308 (438)
....+|+||++..+....-.+ +....++.++.|.....+..+.+++++
T Consensus 155 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~ 205 (446)
T PRK11823 155 EKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVG 205 (446)
T ss_pred hCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 566899999999887543211 122345566777777776666666654
No 410
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.76 E-value=2.2e-05 Score=81.02 Aligned_cols=123 Identities=25% Similarity=0.274 Sum_probs=94.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHH-CCCCcccccCCCCcHHHHH
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLA-HGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A 81 (438)
-|++.||.++..++.-.++.++++ .+......|..|.-.+|+ |..++.+++-+++. .|..++.+|..||||||||
T Consensus 573 r~~lllhL~a~~lyawLie~~~e~---~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA 648 (975)
T KOG0520|consen 573 RDMLLLHLLAELLYAWLIEKVIEW---AGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWA 648 (975)
T ss_pred cchHHHHHHHHHhHHHHHHHHhcc---cccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchH
Confidence 478999999999999999999996 344445556666666676 56666777666664 6788999999999999999
Q ss_pred hhcccccCcHHHHHHHHhCCCCCccc------CCCCCccccccccCCCchhHHHHHHhc
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAK------DNEGKTPLDHLSNGPGSAKLRELLLWH 134 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~------d~~g~t~l~~~a~~~~~~~~~~lL~~~ 134 (438)
+ ..|+..++..|++.|+++... +..|.|+- .++...++..+..+|...
T Consensus 649 a----~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~-~la~s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 649 A----FRGREKLVASLIELGADPGAVTDPSPETPGGKTAA-DLARANGHKGIAGYLSEK 702 (975)
T ss_pred h----hcCHHHHHHHHHHhccccccccCCCCCCCCCCchh-hhhhcccccchHHHHhhh
Confidence 9 889999999999888776543 33577777 555566777777776543
No 411
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.75 E-value=0.0002 Score=61.59 Aligned_cols=138 Identities=16% Similarity=0.167 Sum_probs=60.3
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHccCcEEEEeCcccccCCCCCC
Q 013706 202 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKAD 281 (438)
Q Consensus 202 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~ 281 (438)
++++||+|||||.+|-.+|+.++. +++..+.-....++.--+.+....-+...+ =+||||-. +.. .-=+
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~-------pvI~~Driq~y~~l~v~Sgrp~~~el~~~~--RiyL~~r~-l~~-G~i~ 72 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGA-------PVISLDRIQCYPELSVGSGRPTPSELKGTR--RIYLDDRP-LSD-GIIN 72 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH---------EEEEE-SGGG-GGGTTTTT---SGGGTT-E--EEES-----GGG--S--
T ss_pred EEEECCCCCChhHHHHHHHHHhCC-------CEEEecceecccccccccCCCCHHHHcccc--eeeecccc-ccC-CCcC
Confidence 689999999999999999999987 888877765554432223333322222222 27777532 111 0000
Q ss_pred CchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCCC-cceeCCCCCHHHHHHHHHHHHhcc
Q 013706 282 DKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKMNNQ 352 (438)
Q Consensus 282 ~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~-~~i~~~~~~~~e~~~il~~~l~~~ 352 (438)
..+.....+..+...-+ ...+++=.+ +-.....+..++-....|. .+..++.++.+--..-.++..++.
T Consensus 73 a~ea~~~Li~~v~~~~~-~~~~IlEGG-SISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~M 142 (233)
T PF01745_consen 73 AEEAHERLISEVNSYSA-HGGLILEGG-SISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQM 142 (233)
T ss_dssp HHHHHHHHHHHHHTTTT-SSEEEEEE---HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc-cCceEEeCc-hHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHh
Confidence 11222233333333333 333333333 3333333344555545553 455567777766555555555543
No 412
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.75 E-value=0.0003 Score=61.61 Aligned_cols=111 Identities=12% Similarity=0.176 Sum_probs=57.4
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHH--HcCCcCCC-C--------EEEeecccccc---cccccchHHHHHHHHHcc---
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLY--MVGILPTD-R--------VTEVQRTDLVG---EFVGHTGPKTRRRIKEAE--- 262 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~--~~~~~~~~-~--------~~~~~~~~~~~---~~~g~~~~~~~~~~~~a~--- 262 (438)
.-++|.||+|+|||++.|.|+.... ..|..... . |......+-+. ..+......+.++++.+.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~ 105 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKKGE 105 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccCCC
Confidence 4678999999999999999986542 12221100 0 00111111000 011111245666777655
Q ss_pred CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHH
Q 013706 263 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRV 316 (438)
Q Consensus 263 ~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~ 316 (438)
+.++++||.-+-.. ......+...++..+......+|++|........
T Consensus 106 p~llllDEp~~glD------~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~ 153 (199)
T cd03283 106 PVLFLLDEIFKGTN------SRERQAASAAVLKFLKNKNTIGIISTHDLELADL 153 (199)
T ss_pred CeEEEEecccCCCC------HHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHh
Confidence 58999999743221 1122233444555554445566666655444333
No 413
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.75 E-value=0.00014 Score=78.69 Aligned_cols=131 Identities=22% Similarity=0.331 Sum_probs=86.2
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc------ccccccccchHHH---HHHHHHc--cCcEE
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD------LVGEFVGHTGPKT---RRRIKEA--EGGIL 266 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~------~~~~~~g~~~~~~---~~~~~~a--~~~il 266 (438)
..-++|+.||+.+|||+....+|++.+- .|+.++.-+ .++.|+-....++ ..++-+| +|--|
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~tgh-------kfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWI 959 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARETGH-------KFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWI 959 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHhCc-------cEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCcEE
Confidence 4457999999999999999999998876 677766543 3333333322211 2233333 56789
Q ss_pred EEeCcccccCCCCCCCchhHHHHHHHHHhhccCCC---------------EEEEEecCChhH-H---HHhhhCcCccCCC
Q 013706 267 FVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---------------VVVIFAGYSEPM-K---RVIASNEGFCRRV 327 (438)
Q Consensus 267 ~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~---------------v~vi~~~~~~~~-~---~~~~~~p~l~~R~ 327 (438)
++||..-... .++.+|-+++|+++ -+.+.||.+.|. . ..+ ..|+|.||
T Consensus 960 VLDELNLApT-----------DVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~L--SrAFRNRF 1026 (4600)
T COG5271 960 VLDELNLAPT-----------DVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGL--SRAFRNRF 1026 (4600)
T ss_pred EeeccccCcH-----------HHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHH--HHHHHhhh
Confidence 9999864432 56677777777632 144555543222 1 121 35788899
Q ss_pred CcceeCCCCCHHHHHHHHHHHH
Q 013706 328 TKFFHFNDFNSEELAKILHIKM 349 (438)
Q Consensus 328 ~~~i~~~~~~~~e~~~il~~~l 349 (438)
..++|.....+|+..|+....
T Consensus 1027 -lE~hFddipedEle~ILh~rc 1047 (4600)
T COG5271 1027 -LEMHFDDIPEDELEEILHGRC 1047 (4600)
T ss_pred -HhhhcccCcHHHHHHHHhccC
Confidence 889999999999999997544
No 414
>PRK14532 adenylate kinase; Provisional
Probab=97.71 E-value=0.0002 Score=62.30 Aligned_cols=36 Identities=19% Similarity=0.328 Sum_probs=28.3
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE 245 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 245 (438)
+++|.||||+|||++|+.||+.++ +..++..+++.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g---------~~~is~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG---------MVQLSTGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC---------CeEEeCcHHHHH
Confidence 589999999999999999998764 344566565554
No 415
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.71 E-value=0.00018 Score=64.16 Aligned_cols=28 Identities=32% Similarity=0.603 Sum_probs=24.5
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.|..++|.||||+||||+|+.+|+.++.
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~~g~ 32 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKKENL 32 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3466999999999999999999998754
No 416
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.70 E-value=0.0002 Score=58.32 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=22.3
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
++++++||||+|||+++-.++..+..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHh
Confidence 37899999999999999888887754
No 417
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.70 E-value=0.0002 Score=62.34 Aligned_cols=27 Identities=30% Similarity=0.241 Sum_probs=20.9
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHc
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYMV 226 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~~ 226 (438)
.-+.+.||+|||||++|-+.|..+-..
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~v~~ 46 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALELVKE 46 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 468899999999999999999776543
No 418
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.69 E-value=0.0019 Score=62.19 Aligned_cols=78 Identities=13% Similarity=0.180 Sum_probs=47.3
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCC--cCCCCEEEeecccc--------ccc------ccccchHHHHHHHHHc
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI--LPTDRVTEVQRTDL--------VGE------FVGHTGPKTRRRIKEA 261 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~--~~~~~~~~~~~~~~--------~~~------~~g~~~~~~~~~~~~a 261 (438)
.+..++|+||+|+||||++..+|..+..... -.+..++..++... ..+ ...+....+...+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 4567899999999999999999987753211 11223344443211 011 1223444555555554
Q ss_pred cC-cEEEEeCccccc
Q 013706 262 EG-GILFVDEAYRLI 275 (438)
Q Consensus 262 ~~-~il~iDEid~l~ 275 (438)
.+ -+|+||++....
T Consensus 253 ~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 253 KDFDLVLVDTIGKSP 267 (388)
T ss_pred CCCCEEEEcCCCCCc
Confidence 44 799999998765
No 419
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.68 E-value=7.8e-05 Score=70.59 Aligned_cols=29 Identities=14% Similarity=0.235 Sum_probs=25.0
Q ss_pred CCCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 197 RRPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 197 ~~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
......+++||||+|||++++.|++.+..
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHHh
Confidence 35567999999999999999999997764
No 420
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=97.67 E-value=0.0036 Score=60.42 Aligned_cols=109 Identities=19% Similarity=0.317 Sum_probs=72.0
Q ss_pred CcEEEEeCcccccCCCCCCCchh-HHHHHHHHHhhccC------CCEEEEEecCChhHH---HHhhhCcCccCCC-----
Q 013706 263 GGILFVDEAYRLIPMQKADDKDY-GIEALEEIMSVMDG------GKVVVIFAGYSEPMK---RVIASNEGFCRRV----- 327 (438)
Q Consensus 263 ~~il~iDEid~l~~~~~~~~~~~-~~~~~~~ll~~~~~------~~v~vi~~~~~~~~~---~~~~~~p~l~~R~----- 327 (438)
|-+|+|||++.+..-+. .. -....+.|++.+|+ ..+.+++++++.-++ .=+.+-|||.+|+
T Consensus 240 GLlI~lDE~e~l~kl~~----~~~R~~~ye~lr~lidd~~~G~~~gL~~~~~gTPef~eD~rrGv~sY~AL~~RL~~~~~ 315 (416)
T PF10923_consen 240 GLLILLDELENLYKLRN----DQAREKNYEALRQLIDDIDQGRAPGLYFVFAGTPEFFEDGRRGVYSYEALAQRLAEEFF 315 (416)
T ss_pred ceEEEEechHHHHhcCC----hHHHHHHHHHHHHHHHHHhcCCCCceEEEEeeCHHHhhCccccccccHHHHHHHhcccc
Confidence 35899999999975332 22 33556677777654 357777887777772 1112234444433
Q ss_pred ---------CcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHh
Q 013706 328 ---------TKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET 380 (438)
Q Consensus 328 ---------~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (438)
.-+|.+++++.+++.+++.+...-.. .++.....++++.+..++...+
T Consensus 316 ~~~~~~n~~~pvIrL~~l~~eel~~l~~klr~i~a-----~~~~~~~~v~d~~l~~~~~~~~ 372 (416)
T PF10923_consen 316 ADDGFDNLRAPVIRLQPLTPEELLELLEKLRDIYA-----EAYGYESRVDDEELKAFAQHVA 372 (416)
T ss_pred ccccccCccCceecCCCCCHHHHHHHHHHHHHHHH-----hhCCCCCCCCHHHHHHHHHHHH
Confidence 45788999999999988887655433 2444446788999999998776
No 421
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.66 E-value=0.00024 Score=64.92 Aligned_cols=166 Identities=11% Similarity=0.160 Sum_probs=89.3
Q ss_pred hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccc
Q 013706 163 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 242 (438)
Q Consensus 163 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 242 (438)
+++-.+++.+.|.++.+.+ ..+..|+||.|.+|+||++++|..|..... .++.+..+.-
T Consensus 9 ~lVlf~~ai~hi~ri~RvL--------------~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~-------~~~~i~~~~~ 67 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVL--------------SQPRGHALLVGVGGSGRQSLARLAAFICGY-------EVFQIEITKG 67 (268)
T ss_dssp -----HHHHHHHHHHHHHH--------------CSTTEEEEEECTTTSCHHHHHHHHHHHTTE-------EEE-TTTSTT
T ss_pred ceeeHHHHHHHHHHHHHHH--------------cCCCCCeEEecCCCccHHHHHHHHHHHhcc-------ceEEEEeeCC
Confidence 4556677777777775555 235678999999999999999987775544 4554443221
Q ss_pred cccccccchHHHHHHHHHc----cCcEEEEeCcccccCC-----------CC-CC--CchhHHHHHHHHHhhc-------
Q 013706 243 VGEFVGHTGPKTRRRIKEA----EGGILFVDEAYRLIPM-----------QK-AD--DKDYGIEALEEIMSVM------- 297 (438)
Q Consensus 243 ~~~~~g~~~~~~~~~~~~a----~~~il~iDEid~l~~~-----------~~-~~--~~~~~~~~~~~ll~~~------- 297 (438)
. -..+-...++.++.+| ++.+++|+|-+-.... .. .+ +.+....+++.+....
T Consensus 68 y--~~~~f~~dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~ 145 (268)
T PF12780_consen 68 Y--SIKDFKEDLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISD 145 (268)
T ss_dssp T--HHHHHHHHHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--S
T ss_pred c--CHHHHHHHHHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCC
Confidence 0 0111122445555554 3467777764322211 10 00 1222233333332222
Q ss_pred -------------cCC-CEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhcc
Q 013706 298 -------------DGG-KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQ 352 (438)
Q Consensus 298 -------------~~~-~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~ 352 (438)
..+ +|++++....+.........|+|..++ .+..|.+-+.+.+..+...++.+.
T Consensus 146 ~~~~~~~~F~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~c-tIdW~~~W~~eaL~~Va~~~l~~~ 213 (268)
T PF12780_consen 146 SRESLYEFFIERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCC-TIDWFDPWPEEALLSVANKFLSDI 213 (268)
T ss_dssp SHHHHHHHHHHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHS-EEEEEES--HHHHHHHHHHHCCHH
T ss_pred chHHHHHHHHHHHHhheeEEEEECCCCchHHHHHHhCcchhccc-EEEeCCcCCHHHHHHHHHHHHHhh
Confidence 111 234444433333334445579999866 778888899999999999998764
No 422
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.66 E-value=9.1e-05 Score=64.61 Aligned_cols=64 Identities=17% Similarity=0.247 Sum_probs=29.3
Q ss_pred cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEec-CChhHHHHhhhCcCccCCCCcceeC
Q 013706 262 EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAG-YSEPMKRVIASNEGFCRRVTKFFHF 333 (438)
Q Consensus 262 ~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~-~~~~~~~~~~~~p~l~~R~~~~i~~ 333 (438)
.+++|+|||++.+.+++....... ...+ .++........-++++| +...+ |+.+++..+..+.+
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~-~~~~-~~l~~hRh~g~diiliTQ~~~~i------d~~ir~lve~~~~~ 143 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKV-PEII-EFLAQHRHYGWDIILITQSPSQI------DKFIRDLVEYHYHC 143 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T-----HHH-HGGGGCCCTT-EEEEEES-GGGB-------HHHHCCEEEEEEE
T ss_pred CCcEEEEECChhhcCCCccccccc-hHHH-HHHHHhCcCCcEEEEEeCCHHHH------hHHHHHHHheEEEE
Confidence 579999999999999877421111 1223 33444444445555554 33333 44445544444443
No 423
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00018 Score=73.04 Aligned_cols=156 Identities=15% Similarity=0.178 Sum_probs=103.9
Q ss_pred HHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-----------------------CEEEEEecCC
Q 013706 254 TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----------------------KVVVIFAGYS 310 (438)
Q Consensus 254 ~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-----------------------~v~vi~~~~~ 310 (438)
....+.+|.+|||||||+..|....+ +.+|+.|..+ ++.+|++++.
T Consensus 217 ~pGaVHkAngGVLiIdei~lL~~~~~-----------w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~ 285 (647)
T COG1067 217 KPGAVHKANGGVLIIDEIGLLAQPLQ-----------WKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNR 285 (647)
T ss_pred cCcccccccCcEEEEEhhhhhCcHHH-----------HHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCH
Confidence 34577889999999999999986443 6666666431 4688889888
Q ss_pred hhHHHHhhhCcCccCCCCcceeC--CCC-CHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhh---Hhh
Q 013706 311 EPMKRVIASNEGFCRRVTKFFHF--NDF-NSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETT---EKQ 384 (438)
Q Consensus 311 ~~~~~~~~~~p~l~~R~~~~i~~--~~~-~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 384 (438)
..+..+...+|.++.=|....+| +.| +.+++...+..+.+.... ..--+.++.+++..++..... ...
T Consensus 286 ~~l~~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~------d~~ip~~~~~Av~~li~~a~R~Ag~~~ 359 (647)
T COG1067 286 EDLEDLHEPDRSRIEGFGYEAEFEDTMPITDANRSKLVQFYVQELAR------DGNIPHLDKDAVEELIREAARRAGDQN 359 (647)
T ss_pred HHHHhhcccCHHHHhhcceEEEEcCCCCCChHHHHHHHHHHHHHHHh------cCCCCCCCHHHHHHHHHHHHHhccccc
Confidence 88887744444444433333444 445 567777777777666542 111255788898888775542 222
Q ss_pred hccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706 385 RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 385 ~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 435 (438)
.-.-+.|++.++|..|.-.+ ..++...|+.+|+++|++.-++
T Consensus 360 ~Ltl~~rdl~~lv~~A~~ia---------~~~~~~~I~ae~Ve~a~~~~~~ 401 (647)
T COG1067 360 KLTLRLRDLGNLVREAGDIA---------VSEGRKLITAEDVEEALQKREL 401 (647)
T ss_pred eeccCHHHHHHHHHHhhHHH---------hcCCcccCcHHHHHHHHHhhhh
Confidence 34566789999988776655 1223456999999999988544
No 424
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.64 E-value=4.6e-05 Score=65.32 Aligned_cols=28 Identities=29% Similarity=0.622 Sum_probs=25.2
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
++..++|+||||+|||++|+.+|+.++.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~ 30 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGY 30 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4668999999999999999999998854
No 425
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.64 E-value=0.0078 Score=58.49 Aligned_cols=30 Identities=27% Similarity=0.399 Sum_probs=25.4
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 227 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~ 227 (438)
+|.-++|.||+|+||||++..+|..+...+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G 128 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKG 128 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 456688999999999999999999886544
No 426
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.64 E-value=0.00029 Score=76.27 Aligned_cols=132 Identities=17% Similarity=0.283 Sum_probs=82.3
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc------cccc-ccccchHH----HHHHHH-HccCcEE
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD------LVGE-FVGHTGPK----TRRRIK-EAEGGIL 266 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~------~~~~-~~g~~~~~----~~~~~~-~a~~~il 266 (438)
.+++||.|.||+|||++..++|+..+. .++.++.++ +++. ..++.+.. -...+. ...|+-+
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~-------kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WV 1615 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGK-------KLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWV 1615 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcC-------ceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEE
Confidence 468999999999999999999998876 677777664 3333 22231111 111222 2257899
Q ss_pred EEeCcccccCCCCCCCchhHHHHHHHHHhhccC----------------CCEEEEEecCChhHH---HHhhhCcCccCCC
Q 013706 267 FVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----------------GKVVVIFAGYSEPMK---RVIASNEGFCRRV 327 (438)
Q Consensus 267 ~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----------------~~v~vi~~~~~~~~~---~~~~~~p~l~~R~ 327 (438)
++||+.-.+. .++.-|-..+|. .+..|.+|-++...- .. .+.++..||
T Consensus 1616 lLDEiNLaSQ-----------SVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKg--LPkSF~nRF 1682 (4600)
T COG5271 1616 LLDEINLASQ-----------SVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKG--LPKSFLNRF 1682 (4600)
T ss_pred EeehhhhhHH-----------HHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCccc--CCHHHhhhh
Confidence 9999964431 333333333332 245666664443321 11 134677799
Q ss_pred CcceeCCCCCHHHHHHHHHHHHhc
Q 013706 328 TKFFHFNDFNSEELAKILHIKMNN 351 (438)
Q Consensus 328 ~~~i~~~~~~~~e~~~il~~~l~~ 351 (438)
.++.+..++.+++..|+.+...+
T Consensus 1683 -svV~~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1683 -SVVKMDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred -heEEecccccchHHHHHHhhCCc
Confidence 88899999999999998866543
No 427
>PLN02674 adenylate kinase
Probab=97.63 E-value=0.0001 Score=66.05 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=24.2
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
++..++|.||||+||+|.|+.||+.++
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~ 56 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYC 56 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 457899999999999999999999774
No 428
>PLN02200 adenylate kinase family protein
Probab=97.63 E-value=0.00019 Score=64.51 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=30.8
Q ss_pred CCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc
Q 013706 196 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE 245 (438)
Q Consensus 196 ~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 245 (438)
...+..+++.||||+|||++|+.|++.++. ..++..+++.+
T Consensus 40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~---------~his~gdllR~ 80 (234)
T PLN02200 40 EKTPFITFVLGGPGSGKGTQCEKIVETFGF---------KHLSAGDLLRR 80 (234)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCC---------eEEEccHHHHH
Confidence 334567889999999999999999997643 35666665543
No 429
>PRK10867 signal recognition particle protein; Provisional
Probab=97.60 E-value=0.0041 Score=60.77 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=24.6
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHc
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMV 226 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~ 226 (438)
+|.-++|.||||+||||++..+|..+...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 45668899999999999999999877654
No 430
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.60 E-value=0.0006 Score=61.16 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=20.5
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l 223 (438)
+..-++++||||||||+++..++..+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~ 48 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF 48 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45568999999999999986655544
No 431
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=97.60 E-value=0.003 Score=55.73 Aligned_cols=133 Identities=5% Similarity=-0.023 Sum_probs=87.6
Q ss_pred CceEEecCCC-CCHHHHHHHHHHHHHHcCCcC--CCCEEEeeccccc---ccccccchHHHHHHHHHc-------cCcEE
Q 013706 200 PHMAFLGNPG-TGKTMVARILGRLLYMVGILP--TDRVTEVQRTDLV---GEFVGHTGPKTRRRIKEA-------EGGIL 266 (438)
Q Consensus 200 ~~~ll~GppG-tGKT~la~~la~~l~~~~~~~--~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~a-------~~~il 266 (438)
...||.|..+ +||..++..+++.+...++.. ...+..+.+..-. ++.+ .-..+|++.+.. ...|+
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I--~IdqIReL~~~l~~~p~~g~~KVi 93 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNI--SIEQIRKLQDFLSKTSAISGYKVA 93 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcc--cHHHHHHHHHHHhhCcccCCcEEE
Confidence 3589999998 999999999999886543311 1223333221100 0111 223444444332 23799
Q ss_pred EEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEE-ecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHH
Q 013706 267 FVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIF-AGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAK 343 (438)
Q Consensus 267 ~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~-~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~ 343 (438)
+|+++|.|.. .+.|+||..+|+ ...++|+ +.+...+ .|.+++|+ ..+.|+.|...+..+
T Consensus 94 II~~ae~mt~-----------~AANALLKtLEEPP~~t~fILit~~~~~L------LpTIrSRC-q~i~~~~p~~~~~~e 155 (263)
T PRK06581 94 IIYSAELMNL-----------NAANSCLKILEDAPKNSYIFLITSRAASI------ISTIRSRC-FKINVRSSILHAYNE 155 (263)
T ss_pred EEechHHhCH-----------HHHHHHHHhhcCCCCCeEEEEEeCChhhC------chhHhhce-EEEeCCCCCHHHHHH
Confidence 9999999987 455999999998 3455554 4333333 68899998 999999999988888
Q ss_pred HHHHHHhcc
Q 013706 344 ILHIKMNNQ 352 (438)
Q Consensus 344 il~~~l~~~ 352 (438)
....++...
T Consensus 156 ~~~~~~~p~ 164 (263)
T PRK06581 156 LYSQFIQPI 164 (263)
T ss_pred HHHHhcccc
Confidence 877776654
No 432
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.59 E-value=9.7e-05 Score=66.72 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=24.9
Q ss_pred CCCCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 196 ARRPPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 196 ~~~~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
......++|.||+|+|||++++.+++.+.
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 34567799999999999999999998764
No 433
>PRK13949 shikimate kinase; Provisional
Probab=97.58 E-value=0.00012 Score=62.26 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=23.7
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.+++|.||||+|||++++.+|+.++.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~ 27 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGL 27 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 36899999999999999999998865
No 434
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.56 E-value=0.00041 Score=58.84 Aligned_cols=100 Identities=15% Similarity=0.162 Sum_probs=59.3
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc-----------------ccccchHHHHHHHHHc-cC
Q 013706 202 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-----------------FVGHTGPKTRRRIKEA-EG 263 (438)
Q Consensus 202 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-----------------~~g~~~~~~~~~~~~a-~~ 263 (438)
+++.|+||+|||++|..++.... .+.+.+....-.+. ...|....+.+.++.. .+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~-------~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELG-------GPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC-------CCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCC
Confidence 68899999999999999987522 14444443322111 1223445666666554 45
Q ss_pred cEEEEeCcccccCCCCCCCc----hhHHHHHHHHHhhccCCCEEEEEec
Q 013706 264 GILFVDEAYRLIPMQKADDK----DYGIEALEEIMSVMDGGKVVVIFAG 308 (438)
Q Consensus 264 ~il~iDEid~l~~~~~~~~~----~~~~~~~~~ll~~~~~~~v~vi~~~ 308 (438)
.+++||=+..+..+.-..+. +.....+..|+..+......+|+.+
T Consensus 75 ~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~~~~~~viVs 123 (169)
T cd00544 75 DVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKPGTLILVS 123 (169)
T ss_pred CEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 79999998877654322111 2223455677777766554444443
No 435
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.56 E-value=0.00065 Score=60.94 Aligned_cols=105 Identities=19% Similarity=0.173 Sum_probs=62.2
Q ss_pred CCCCceEEecCCCCCHHHHHHHHHHHHHHc-CCcCCCCEEEeeccccc-----------------------------cc-
Q 013706 197 RRPPHMAFLGNPGTGKTMVARILGRLLYMV-GILPTDRVTEVQRTDLV-----------------------------GE- 245 (438)
Q Consensus 197 ~~~~~~ll~GppGtGKT~la~~la~~l~~~-~~~~~~~~~~~~~~~~~-----------------------------~~- 245 (438)
+....+|+.||||||||+++..++...... +. +++.++..+-. ..
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge----~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGE----KVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT------EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC----cEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccc
Confidence 355678999999999999998876544222 21 33333332100 00
Q ss_pred ------ccccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEec
Q 013706 246 ------FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAG 308 (438)
Q Consensus 246 ------~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~ 308 (438)
........+.+.++..+..+++||-+..+.... .....+..+..|...+....++++++.
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~---~~~~~r~~l~~l~~~l~~~~~t~llt~ 158 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLYD---DPEELRRFLRALIKFLKSRGVTTLLTS 158 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSS---SGGGHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcC---CHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 001112344556666677999999999882211 234455677888888876666555554
No 436
>PRK05973 replicative DNA helicase; Provisional
Probab=97.55 E-value=0.0018 Score=57.89 Aligned_cols=105 Identities=14% Similarity=0.109 Sum_probs=56.4
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc----cccc----------c--------c-ccc-hHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD----LVGE----------F--------V-GHT-GPK 253 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~----~~~~----------~--------~-g~~-~~~ 253 (438)
+..-+++.|+||+|||+++-.++......|. +.+.++..+ +... + . ..+ ...
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge----~vlyfSlEes~~~i~~R~~s~g~d~~~~~~~~~~d~~d~~~~~~i 138 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGR----TGVFFTLEYTEQDVRDRLRALGADRAQFADLFEFDTSDAICADYI 138 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC----eEEEEEEeCCHHHHHHHHHHcCCChHHhccceEeecCCCCCHHHH
Confidence 4456889999999999999988775533231 222222211 0000 0 0 001 112
Q ss_pred HHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecC
Q 013706 254 TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY 309 (438)
Q Consensus 254 ~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~ 309 (438)
+..+..+....++|||=+..+..... ..+ ....+..|.....+..+.+|+++.
T Consensus 139 i~~l~~~~~~~lVVIDsLq~l~~~~~--~~e-l~~~~~~Lk~~Ak~~gitvIl~sQ 191 (237)
T PRK05973 139 IARLASAPRGTLVVIDYLQLLDQRRE--KPD-LSVQVRALKSFARERGLIIVFISQ 191 (237)
T ss_pred HHHHHHhhCCCEEEEEcHHHHhhccc--chh-HHHHHHHHHHHHHhCCCeEEEEec
Confidence 33333433568999999887753322 122 233344555565666666666643
No 437
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.54 E-value=6.8e-05 Score=60.16 Aligned_cols=28 Identities=32% Similarity=0.541 Sum_probs=24.9
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
..+++|+.|-||||||+++..+|+.++.
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~~ 33 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTGL 33 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhCC
Confidence 4579999999999999999999987654
No 438
>PF13245 AAA_19: Part of AAA domain
Probab=97.53 E-value=0.00022 Score=51.62 Aligned_cols=25 Identities=44% Similarity=0.676 Sum_probs=18.7
Q ss_pred CceEEecCCCCCHH-HHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKT-MVARILGRLLY 224 (438)
Q Consensus 200 ~~~ll~GppGtGKT-~la~~la~~l~ 224 (438)
+-+++.|||||||| ++++.++..+.
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34666999999999 66666666653
No 439
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.52 E-value=0.00026 Score=60.17 Aligned_cols=100 Identities=11% Similarity=0.146 Sum_probs=56.7
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc----------------c-cccchHHHHHHHHH-c-
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE----------------F-VGHTGPKTRRRIKE-A- 261 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~----------------~-~g~~~~~~~~~~~~-a- 261 (438)
.+++.||||+|||++|..++..+.. +.+.+........ | .-|....+.+.++. .
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~-------~~~~iat~~~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~ 75 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL-------QVLYIATAQPFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA 75 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC-------CcEeCcCCCCChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence 5899999999999999999986542 2333333221110 0 11122245555655 2
Q ss_pred cCcEEEEeCcccccCCCCCCCc-hhHHHHHHHHHhhccCCCEEEEEe
Q 013706 262 EGGILFVDEAYRLIPMQKADDK-DYGIEALEEIMSVMDGGKVVVIFA 307 (438)
Q Consensus 262 ~~~il~iDEid~l~~~~~~~~~-~~~~~~~~~ll~~~~~~~v~vi~~ 307 (438)
.+.+++||=+..+..+.-..+. +.....+..|+..+......+|+.
T Consensus 76 ~~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~~tvVlV 122 (170)
T PRK05800 76 PGRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLPAKIILV 122 (170)
T ss_pred CCCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3578999998888653221111 223345567777776644434444
No 440
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.52 E-value=0.00014 Score=73.75 Aligned_cols=59 Identities=22% Similarity=0.327 Sum_probs=40.0
Q ss_pred HHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCC
Q 013706 8 LHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF 66 (438)
Q Consensus 8 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 66 (438)
...||.+|+...|+..++.......++|..|.-|+++|+.|..+-+.+++++|++++..
T Consensus 29 fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~ 87 (822)
T KOG3609|consen 29 FLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE 87 (822)
T ss_pred HHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccc
Confidence 34577777777777777643333456777777777777777777777777777776543
No 441
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.52 E-value=0.00079 Score=60.72 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=22.5
Q ss_pred CCCCceEEecCCCCCHHHHHHHHHHHH
Q 013706 197 RRPPHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 197 ~~~~~~ll~GppGtGKT~la~~la~~l 223 (438)
+....++++||||||||+++..++...
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~ 49 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA 49 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 345668899999999999999997654
No 442
>PRK06217 hypothetical protein; Validated
Probab=97.51 E-value=0.00036 Score=60.31 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=23.2
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
..|+|.|+||+|||++|+.|++.++.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~ 27 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDI 27 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 35899999999999999999998754
No 443
>PRK00625 shikimate kinase; Provisional
Probab=97.50 E-value=8.4e-05 Score=63.32 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=23.3
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
+|+|.|+||+|||++++.+|+.++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~ 26 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSL 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999998865
No 444
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=97.50 E-value=6.1e-05 Score=77.93 Aligned_cols=91 Identities=23% Similarity=0.179 Sum_probs=73.1
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcc------cccCCCC
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIE------AKANNGM 75 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~------~~~~~g~ 75 (438)
.+|+..+|. |..++.++.-+++.+ .+..++.+|..||||||||+.+|+..++..|++.|++.+ .....|.
T Consensus 606 ~d~qgV~hf-ca~lg~ewA~ll~~~---~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ 681 (975)
T KOG0520|consen 606 RDGQGVIHF-CAALGYEWAFLPISA---DGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGK 681 (975)
T ss_pred ccCCChhhH-hhhcCCceeEEEEee---cccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCC
Confidence 368888998 667788888888876 788999999999999999999999999999998876543 3445677
Q ss_pred cHHHHHhhcccccCcHHHHHHHHhC
Q 013706 76 TPLHLSVWYSIRSEDYATVKTLLEY 100 (438)
Q Consensus 76 t~L~~A~~~~~~~~~~~~~~~Ll~~ 100 (438)
|+--.|. .+|+..+..+|-+.
T Consensus 682 ta~~la~----s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 682 TAADLAR----ANGHKGIAGYLSEK 702 (975)
T ss_pred chhhhhh----cccccchHHHHhhh
Confidence 8877776 77887777666543
No 445
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.50 E-value=8.1e-05 Score=62.25 Aligned_cols=27 Identities=26% Similarity=0.534 Sum_probs=24.9
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
..+++|.|++|+||||+.|.+|+.|+.
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~ 28 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNL 28 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCC
Confidence 357999999999999999999999987
No 446
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.49 E-value=0.00058 Score=59.78 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=21.9
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
-+++.||+|+|||++++++...+..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4789999999999999999887753
No 447
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.47 E-value=0.00024 Score=74.34 Aligned_cols=88 Identities=24% Similarity=0.273 Sum_probs=53.1
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc----ccccccccchHHHHHHHHH-------------cc
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD----LVGEFVGHTGPKTRRRIKE-------------AE 262 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~-------------a~ 262 (438)
+.+++.|+||||||++++++.+.+...+. ...++-+.++. -+.+..|.....+.+.+.. ..
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~--~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~ 416 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGG--LLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPID 416 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCC--CceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhcccc
Confidence 46899999999999999999888765431 01333333332 1222233323333333321 13
Q ss_pred CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC
Q 013706 263 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG 300 (438)
Q Consensus 263 ~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~ 300 (438)
..+|++||+..+.. .....|+..+..+
T Consensus 417 ~~llIvDEaSMvd~-----------~~~~~Ll~~~~~~ 443 (720)
T TIGR01448 417 CDLLIVDESSMMDT-----------WLALSLLAALPDH 443 (720)
T ss_pred CCEEEEeccccCCH-----------HHHHHHHHhCCCC
Confidence 47999999977753 4457777777654
No 448
>PRK06547 hypothetical protein; Provisional
Probab=97.47 E-value=0.00031 Score=59.78 Aligned_cols=29 Identities=24% Similarity=0.204 Sum_probs=24.5
Q ss_pred CCCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 197 RRPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 197 ~~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
..+..+++.|+||+|||++|+.+++.++.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~ 41 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGF 41 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35667888999999999999999997643
No 449
>PRK14529 adenylate kinase; Provisional
Probab=97.46 E-value=0.00032 Score=62.13 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=22.9
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
+++|.||||+|||++++.|++.++.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~ 26 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDL 26 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 5889999999999999999998864
No 450
>PRK13947 shikimate kinase; Provisional
Probab=97.45 E-value=0.00011 Score=62.73 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=24.0
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.++++.|+||+|||++|+.+|+.++.
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 37999999999999999999999876
No 451
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.45 E-value=0.00016 Score=62.53 Aligned_cols=50 Identities=28% Similarity=0.330 Sum_probs=30.9
Q ss_pred hcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHc
Q 013706 164 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV 226 (438)
Q Consensus 164 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~ 226 (438)
++|.+...+++...+. . .....+..++++||||+|||++.+.+...+...
T Consensus 2 fvgR~~e~~~l~~~l~-~------------~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-A------------AQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -TT-HHHHHHHHHTTG-G------------TSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-H------------HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4677777777776543 1 223466889999999999999999998888663
No 452
>PRK13808 adenylate kinase; Provisional
Probab=97.45 E-value=0.00041 Score=64.89 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=22.4
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.|+|.||||+|||++++.|++.++.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl 26 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGI 26 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999997743
No 453
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.45 E-value=0.0016 Score=57.17 Aligned_cols=112 Identities=15% Similarity=0.198 Sum_probs=58.2
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHH--HcCCcCCCCEEEe----------eccc----ccccccccchHHHHHHHHHc-c
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLY--MVGILPTDRVTEV----------QRTD----LVGEFVGHTGPKTRRRIKEA-E 262 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~--~~~~~~~~~~~~~----------~~~~----~~~~~~g~~~~~~~~~~~~a-~ 262 (438)
.-++|.||.|+|||++.+.++.... ..|.........+ ...+ -.+.+.++. +.+..++..+ +
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~-~~~~~il~~~~~ 108 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEM-SETAYILDYADG 108 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHHH-HHHHHHHHhcCC
Confidence 4588999999999999999975442 2222111111011 1110 111122221 2344555555 5
Q ss_pred CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhh
Q 013706 263 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIA 318 (438)
Q Consensus 263 ~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~ 318 (438)
+.++++||+.+=. .......+...+++.+.+....+|++|....+...+.
T Consensus 109 ~~lvllDE~~~gt------~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 109 DSLVLIDELGRGT------SSADGFAISLAILECLIKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred CcEEEeccccCCC------CHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhh
Confidence 6999999984322 1122223334555555544567777776655554443
No 454
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.44 E-value=0.001 Score=57.95 Aligned_cols=104 Identities=18% Similarity=0.297 Sum_probs=55.7
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccc--------ccccc------c---ch-HHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV--------GEFVG------H---TG-PKTRRRIKE 260 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~--------~~~~g------~---~~-~~~~~~~~~ 260 (438)
|.-++|.||+|+||||.+-.+|..+...+ .+..++..+....- .+.+| + .. ....+.+++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~--~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKG--KKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhcc--ccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 45688999999999999999988886542 22234444332210 11111 1 11 123344444
Q ss_pred c---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCC
Q 013706 261 A---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 310 (438)
Q Consensus 261 a---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~ 310 (438)
. ..-++|||-...... +.....-+..++..+....+.+++..+.
T Consensus 79 ~~~~~~D~vlIDT~Gr~~~------d~~~~~el~~~~~~~~~~~~~LVlsa~~ 125 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAGRSPR------DEELLEELKKLLEALNPDEVHLVLSATM 125 (196)
T ss_dssp HHHTTSSEEEEEE-SSSST------HHHHHHHHHHHHHHHSSSEEEEEEEGGG
T ss_pred HhhcCCCEEEEecCCcchh------hHHHHHHHHHHhhhcCCccceEEEeccc
Confidence 3 235999998754432 1222334456666665566666665443
No 455
>PRK03839 putative kinase; Provisional
Probab=97.43 E-value=0.00011 Score=63.32 Aligned_cols=25 Identities=40% Similarity=0.640 Sum_probs=22.9
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.++|.|+||+||||+++.+|+.++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~ 26 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGY 26 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999998865
No 456
>PRK06762 hypothetical protein; Provisional
Probab=97.42 E-value=0.0003 Score=59.79 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=21.8
Q ss_pred CceEEecCCCCCHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l 223 (438)
.-++|.|+||+|||++|+.+++.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999977
No 457
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.41 E-value=0.0012 Score=60.47 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=23.3
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
..++++.||||+|||++.+.++..+.
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 46899999999999999999998663
No 458
>PLN02459 probable adenylate kinase
Probab=97.41 E-value=0.00067 Score=61.20 Aligned_cols=38 Identities=42% Similarity=0.586 Sum_probs=28.9
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccc
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG 244 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 244 (438)
.+.+++|.||||+|||++|+.+++.++ +..++..+++.
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~---------~~~is~gdllR 65 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLG---------VPHIATGDLVR 65 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhC---------CcEEeCcHHHH
Confidence 345689999999999999999999774 34555555543
No 459
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.41 E-value=0.0022 Score=56.39 Aligned_cols=110 Identities=14% Similarity=0.140 Sum_probs=55.7
Q ss_pred CceEEecCCCCCHHHHHHHHHHHH--HHcCCcCCCC----------EEEeeccccccccccc---chHHHHHHHHHc-cC
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLL--YMVGILPTDR----------VTEVQRTDLVGEFVGH---TGPKTRRRIKEA-EG 263 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l--~~~~~~~~~~----------~~~~~~~~~~~~~~g~---~~~~~~~~~~~a-~~ 263 (438)
..+++.||.|+|||++.+.++... ...|...... +..+...+......+. ....+..++..+ .+
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~ 109 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATPR 109 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhccCC
Confidence 468999999999999999998433 1222111111 1111111111111111 223344445443 46
Q ss_pred cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHH
Q 013706 264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKR 315 (438)
Q Consensus 264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~ 315 (438)
.++++||.-+=.. ......+...+++.+......+|++|.......
T Consensus 110 ~llllDEp~~gld------~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~ 155 (202)
T cd03243 110 SLVLIDELGRGTS------TAEGLAIAYAVLEHLLEKGCRTLFATHFHELAD 155 (202)
T ss_pred eEEEEecCCCCCC------HHHHHHHHHHHHHHHHhcCCeEEEECChHHHHH
Confidence 8999999854332 112223344555555443455666665544433
No 460
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.40 E-value=0.0013 Score=59.30 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=21.5
Q ss_pred CCCCceEEecCCCCCHHHHHHHHHHH
Q 013706 197 RRPPHMAFLGNPGTGKTMVARILGRL 222 (438)
Q Consensus 197 ~~~~~~ll~GppGtGKT~la~~la~~ 222 (438)
.+...+|++||||+|||++|-.++..
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~ 44 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWN 44 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 35667899999999999999877654
No 461
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.39 E-value=0.0015 Score=63.96 Aligned_cols=107 Identities=16% Similarity=0.198 Sum_probs=57.0
Q ss_pred hhhcChHHHHHHHHHHHH-HhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC---CEEEe
Q 013706 162 SNIVGLHELKIQLRKWAK-GMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD---RVTEV 237 (438)
Q Consensus 162 ~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~---~~~~~ 237 (438)
-.|.|.+.+|+.|.-++- .+. +.-..|.. .+..-|||+.|.|-|-|+-|.|.+-+.... .+..++ .=+-+
T Consensus 301 PSI~GH~~vKkAillLLlGGvE---k~L~NGsh--lRGDINiLlvGDPSvAKSQLLRyVLntApl-AI~TTGRGSSGVGL 374 (818)
T KOG0479|consen 301 PSIYGHDYVKKAILLLLLGGVE---KNLENGSH--LRGDINILLVGDPSVAKSQLLRYVLNTAPL-AIATTGRGSSGVGL 374 (818)
T ss_pred cccccHHHHHHHHHHHHhccce---eccCCCce--eccceeEEEecCchHHHHHHHHHHHhcccc-cccccCCCCCCccc
Confidence 357899999988775421 111 11111221 234568999999999999999998664321 111010 00111
Q ss_pred ecccccccccccchHHH-HHHHHHccCcEEEEeCcccccC
Q 013706 238 QRTDLVGEFVGHTGPKT-RRRIKEAEGGILFVDEAYRLIP 276 (438)
Q Consensus 238 ~~~~~~~~~~g~~~~~~-~~~~~~a~~~il~iDEid~l~~ 276 (438)
.++-...+--|| +.+ ..+.-.|..||+-|||+|+++.
T Consensus 375 TAAVTtD~eTGE--RRLEAGAMVLADRGVVCIDEFDKMsD 412 (818)
T KOG0479|consen 375 TAAVTTDQETGE--RRLEAGAMVLADRGVVCIDEFDKMSD 412 (818)
T ss_pred eeEEeeccccch--hhhhcCceEEccCceEEehhcccccc
Confidence 111111111221 111 1123345679999999999975
No 462
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.39 E-value=0.0013 Score=61.50 Aligned_cols=108 Identities=16% Similarity=0.210 Sum_probs=59.1
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccc----cccc------------cc---hHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG----EFVG------------HT---GPKTRRRI 258 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~----~~~g------------~~---~~~~~~~~ 258 (438)
+..-++++||||||||+||-.++......+ .+++.++...... +.+| .. ...+..++
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g----~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li 129 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAG----GTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLV 129 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC----CcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 444578999999999999988776654322 2444444322111 0011 01 11122223
Q ss_pred HHccCcEEEEeCcccccCCCC--CC---C-chhHH----HHHHHHHhhccCCCEEEEEecC
Q 013706 259 KEAEGGILFVDEAYRLIPMQK--AD---D-KDYGI----EALEEIMSVMDGGKVVVIFAGY 309 (438)
Q Consensus 259 ~~a~~~il~iDEid~l~~~~~--~~---~-~~~~~----~~~~~ll~~~~~~~v~vi~~~~ 309 (438)
+.....+|+||=+..+.+... +. . ..... +.+..|...+...++.+|+++.
T Consensus 130 ~~~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~~~tvi~tNQ 190 (321)
T TIGR02012 130 RSGAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKSNTTAIFINQ 190 (321)
T ss_pred hccCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 333458999999999886421 11 1 11112 3344555556667788888753
No 463
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.39 E-value=0.0017 Score=57.48 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=20.2
Q ss_pred CceEEecCCCCCHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGR 221 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~ 221 (438)
..++|.||.|+|||++.|.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5689999999999999999984
No 464
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.38 E-value=0.00022 Score=57.39 Aligned_cols=40 Identities=25% Similarity=0.211 Sum_probs=29.5
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 237 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 237 (438)
+...++|.|+.|+|||+++|.+++.++......+..|.-+
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~~~v~SPTf~lv 60 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQGNVTSPTFTLV 60 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCCcccCCCeeee
Confidence 4456889999999999999999998875444334444333
No 465
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.38 E-value=0.00088 Score=60.03 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=23.0
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
...-++++||||+|||+++..++.....
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~ 49 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAK 49 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3445789999999999999999886643
No 466
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.37 E-value=0.00013 Score=59.49 Aligned_cols=24 Identities=46% Similarity=0.648 Sum_probs=22.1
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHH
Q 013706 202 MAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 202 ~ll~GppGtGKT~la~~la~~l~~ 225 (438)
+-+.|||||||||+|+.||+.++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCC
Confidence 568899999999999999999876
No 467
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.37 E-value=0.00074 Score=57.54 Aligned_cols=27 Identities=33% Similarity=0.431 Sum_probs=23.9
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYMVG 227 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~~~ 227 (438)
-++|.|+||+|||++|+-+|++|....
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhh
Confidence 478999999999999999999997533
No 468
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.36 E-value=0.00012 Score=60.39 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=20.6
Q ss_pred eEEecCCCCCHHHHHHHHHHHHH
Q 013706 202 MAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 202 ~ll~GppGtGKT~la~~la~~l~ 224 (438)
+++.||||+|||++|+.+++.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 68999999999999999998653
No 469
>PRK13948 shikimate kinase; Provisional
Probab=97.36 E-value=0.00024 Score=61.01 Aligned_cols=43 Identities=23% Similarity=0.370 Sum_probs=33.1
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccccccc
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH 249 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~ 249 (438)
++.+++|.|++|+|||++++.+|+.++. +|+.. ..+..+..|.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~-------~~iD~--D~~ie~~~g~ 51 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALML-------HFIDT--DRYIERVTGK 51 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC-------CEEEC--CHHHHHHHhC
Confidence 5678999999999999999999998865 66543 3444455554
No 470
>PRK04040 adenylate kinase; Provisional
Probab=97.34 E-value=0.00035 Score=60.46 Aligned_cols=26 Identities=31% Similarity=0.268 Sum_probs=23.2
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
+..++++|+||+|||++++.+++.+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 45689999999999999999999873
No 471
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.34 E-value=0.037 Score=54.17 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=23.6
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
.|.-++|.||||+|||+++..+|..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 456788999999999999999998864
No 472
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.33 E-value=0.00019 Score=60.09 Aligned_cols=25 Identities=36% Similarity=0.663 Sum_probs=22.7
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
+++|+||||+|||++|+.+++.++.
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~ 25 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGL 25 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998854
No 473
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.33 E-value=0.0002 Score=61.94 Aligned_cols=35 Identities=26% Similarity=0.365 Sum_probs=27.3
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc
Q 013706 202 MAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE 245 (438)
Q Consensus 202 ~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 245 (438)
+++.||||+|||++|+.+|+.++ +..++..+++.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~---------~~~is~~d~lr~ 36 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG---------FTHLSAGDLLRA 36 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---------CeEEECChHHHH
Confidence 68999999999999999999774 345555555543
No 474
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.33 E-value=0.002 Score=63.71 Aligned_cols=107 Identities=16% Similarity=0.165 Sum_probs=62.9
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc------ccc----------c-chHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE------FVG----------H-TGPKTRRRIKE 260 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~------~~g----------~-~~~~~~~~~~~ 260 (438)
+..-++++|+||+|||+++..++..+...+ .+++.++..+...+ -+| + ....+...+++
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g----~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~ 168 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQ----MKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEE 168 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcC----CcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHh
Confidence 445688999999999999999987664432 24444444321111 011 1 12234444555
Q ss_pred ccCcEEEEeCcccccCCCCC-CC--chhHHHHHHHHHhhccCCCEEEEEec
Q 013706 261 AEGGILFVDEAYRLIPMQKA-DD--KDYGIEALEEIMSVMDGGKVVVIFAG 308 (438)
Q Consensus 261 a~~~il~iDEid~l~~~~~~-~~--~~~~~~~~~~ll~~~~~~~v~vi~~~ 308 (438)
....+++||.+..+...... .. ....++.+..|........+.+++++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~ 219 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVG 219 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 56789999999988653221 11 12234555666666666566666654
No 475
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.32 E-value=0.00019 Score=57.93 Aligned_cols=22 Identities=41% Similarity=0.687 Sum_probs=20.5
Q ss_pred eEEecCCCCCHHHHHHHHHHHH
Q 013706 202 MAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 202 ~ll~GppGtGKT~la~~la~~l 223 (438)
|+|.|+|||||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999975
No 476
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.31 E-value=0.00035 Score=64.60 Aligned_cols=109 Identities=17% Similarity=0.099 Sum_probs=61.3
Q ss_pred CCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe--ecccccccccccchHHHHHHHHHcc-CcEEEEeCcc
Q 013706 196 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV--QRTDLVGEFVGHTGPKTRRRIKEAE-GGILFVDEAY 272 (438)
Q Consensus 196 ~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~a~-~~il~iDEid 272 (438)
..+++++-|||+-|.|||+|--.....+..... .+..|... ..-.-+..+.|++...-.-.-+-+. .-||.|||++
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k-~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~~~vLCfDEF~ 140 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERK-RRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAAETRVLCFDEFE 140 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCcccc-ccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHhcCCEEEeeeee
Confidence 347889999999999999999888876632110 01111000 0000112234554222222222233 3799999984
Q ss_pred cccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhH
Q 013706 273 RLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPM 313 (438)
Q Consensus 273 ~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~ 313 (438)
--- -...-++..|+..+=...|++++|+|..|-
T Consensus 141 VtD--------I~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~ 173 (367)
T COG1485 141 VTD--------IADAMILGRLLEALFARGVVLVATSNTAPD 173 (367)
T ss_pred ecC--------hHHHHHHHHHHHHHHHCCcEEEEeCCCChH
Confidence 221 112256778888776667888888775553
No 477
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.29 E-value=0.0094 Score=56.88 Aligned_cols=76 Identities=14% Similarity=0.129 Sum_probs=46.1
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc--cccc------------ccccchHHHHHHHHHcc-
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD--LVGE------------FVGHTGPKTRRRIKEAE- 262 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~--~~~~------------~~g~~~~~~~~~~~~a~- 262 (438)
.+..++|.||+|+|||+++..||..+...+. +..++..+... ...+ .+......+.+.+..+.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~Gk--kVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKK--TVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCC--cEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 4567899999999999999999988864332 11233332221 1111 11234555666665443
Q ss_pred ---CcEEEEeCccccc
Q 013706 263 ---GGILFVDEAYRLI 275 (438)
Q Consensus 263 ---~~il~iDEid~l~ 275 (438)
.-+||||-..+..
T Consensus 318 ~~~~DvVLIDTaGRs~ 333 (436)
T PRK11889 318 EARVDYILIDTAGKNY 333 (436)
T ss_pred ccCCCEEEEeCccccC
Confidence 3789999876544
No 478
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.29 E-value=0.00097 Score=57.85 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=18.7
Q ss_pred CceEEecCCCCCHHH-HHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTM-VARILGRLL 223 (438)
Q Consensus 200 ~~~ll~GppGtGKT~-la~~la~~l 223 (438)
.++++.||+|+|||+ ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 689999999999999 555554444
No 479
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.29 E-value=0.00065 Score=61.91 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.7
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHc
Q 013706 202 MAFLGNPGTGKTMVARILGRLLYMV 226 (438)
Q Consensus 202 ~ll~GppGtGKT~la~~la~~l~~~ 226 (438)
|+|.|+||+|||++|+.+++.+...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 6899999999999999999988653
No 480
>PRK08233 hypothetical protein; Provisional
Probab=97.28 E-value=0.0012 Score=56.94 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.6
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
.-+.+.|+||+||||+|+.|+..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3467889999999999999998764
No 481
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.28 E-value=0.0019 Score=59.11 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=21.7
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l 223 (438)
+..-++++||||||||+++-.++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~ 60 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ 60 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45568899999999999999887654
No 482
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.27 E-value=0.00018 Score=59.62 Aligned_cols=24 Identities=42% Similarity=0.627 Sum_probs=21.1
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.++++|.||||||++++.++ .++.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~ 25 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGY 25 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCC
Confidence 57899999999999999999 6654
No 483
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.26 E-value=0.00029 Score=50.00 Aligned_cols=22 Identities=41% Similarity=0.674 Sum_probs=20.3
Q ss_pred eEEecCCCCCHHHHHHHHHHHH
Q 013706 202 MAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 202 ~ll~GppGtGKT~la~~la~~l 223 (438)
+.+.|+||+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999976
No 484
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.25 E-value=0.00098 Score=59.26 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=22.6
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.|++.||||+|||++|+.||+.++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~ 26 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGI 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999998754
No 485
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.25 E-value=0.0005 Score=65.51 Aligned_cols=30 Identities=13% Similarity=0.237 Sum_probs=25.0
Q ss_pred CCCCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 196 ARRPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 196 ~~~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
......+++.||||+|||++++.+++.+..
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~ 194 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKIAQAITR 194 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHHHHhhcc
Confidence 345566999999999999999999987643
No 486
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.24 E-value=0.0025 Score=55.89 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=19.4
Q ss_pred ceEEecCCCCCHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKTMVARILGR 221 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~ 221 (438)
.++|.||.|+|||++.|.++.
T Consensus 30 ~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 599999999999999999983
No 487
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.24 E-value=0.0008 Score=59.56 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=21.5
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHH
Q 013706 202 MAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 202 ~ll~GppGtGKT~la~~la~~l~~ 225 (438)
|++.||||+|||++|+.||+.++.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~ 25 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGL 25 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC
Confidence 789999999999999999987643
No 488
>PTZ00202 tuzin; Provisional
Probab=97.24 E-value=0.012 Score=56.65 Aligned_cols=52 Identities=19% Similarity=0.224 Sum_probs=38.7
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
...+.+|.+....++.+.+... ....+.-++|.||+|+|||+++|.+...+.
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~~-------------d~~~privvLtG~~G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRRL-------------DTAHPRIVVFTGFRGCGKSSLCRSAVRKEG 311 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhcc-------------CCCCceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3567788888888887765422 122445678999999999999999987654
No 489
>PRK14531 adenylate kinase; Provisional
Probab=97.23 E-value=0.00028 Score=61.02 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=23.2
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
..+++.||||+|||++++.||+.++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~ 28 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGL 28 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46999999999999999999998754
No 490
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.22 E-value=0.00024 Score=60.94 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=22.9
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
+-++|.||||+|||++|+.+++.+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 45889999999999999999997753
No 491
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.22 E-value=0.0015 Score=56.59 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=23.6
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
....+++.||+|+|||++.+++...+.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 456899999999999999999988653
No 492
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.22 E-value=0.0061 Score=55.83 Aligned_cols=97 Identities=19% Similarity=0.153 Sum_probs=52.3
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe------ecccccccccc-cchHHHHHHHHH---ccCcEEEE
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV------QRTDLVGEFVG-HTGPKTRRRIKE---AEGGILFV 268 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~------~~~~~~~~~~g-~~~~~~~~~~~~---a~~~il~i 268 (438)
...++|.||+|+|||++.+++...+.... ..++.+ .........+. +........++. ..+-+|++
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~i~~~~----~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~v 155 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSELNTPE----KNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMV 155 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhhCCCC----CeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEe
Confidence 34589999999999999999877664211 112222 11111111111 111122333333 35689999
Q ss_pred eCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhH
Q 013706 269 DEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPM 313 (438)
Q Consensus 269 DEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~ 313 (438)
+|+..- +....+++....+.. ++.+...+..
T Consensus 156 gEiR~~-------------e~a~~~~~aa~tGh~-v~tTlHa~~~ 186 (264)
T cd01129 156 GEIRDA-------------ETAEIAVQAALTGHL-VLSTLHTNDA 186 (264)
T ss_pred ccCCCH-------------HHHHHHHHHHHcCCc-EEEEeccCCH
Confidence 999422 333556677766765 5555444333
No 493
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.21 E-value=0.0017 Score=60.79 Aligned_cols=108 Identities=17% Similarity=0.212 Sum_probs=59.0
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc----cccc-----------c----hHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE----FVGH-----------T----GPKTRRRI 258 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~----~~g~-----------~----~~~~~~~~ 258 (438)
+..-+.++||||+|||++|-.++......+ ...+.++....... .+|- + ...+..++
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g----~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li 129 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLG----GTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLV 129 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC----CCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHH
Confidence 334577999999999999998877654322 24444444221100 0110 1 11122223
Q ss_pred HHccCcEEEEeCcccccCCCC--CCC--ch--h----HHHHHHHHHhhccCCCEEEEEecC
Q 013706 259 KEAEGGILFVDEAYRLIPMQK--ADD--KD--Y----GIEALEEIMSVMDGGKVVVIFAGY 309 (438)
Q Consensus 259 ~~a~~~il~iDEid~l~~~~~--~~~--~~--~----~~~~~~~ll~~~~~~~v~vi~~~~ 309 (438)
+.....+|+||=+-.+.+... +.. .. . ..+.+..|...+...++.+|+++.
T Consensus 130 ~s~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~~~~vI~tNQ 190 (325)
T cd00983 130 RSGAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKSNTTVIFINQ 190 (325)
T ss_pred hccCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 333458999999999886422 111 11 1 123445555555667777777753
No 494
>PRK14530 adenylate kinase; Provisional
Probab=97.20 E-value=0.00032 Score=62.38 Aligned_cols=26 Identities=31% Similarity=0.552 Sum_probs=23.5
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
+.++|.||||+||||+|+.||+.++.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~ 29 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGV 29 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999998854
No 495
>PRK14974 cell division protein FtsY; Provisional
Probab=97.19 E-value=0.0044 Score=58.50 Aligned_cols=30 Identities=37% Similarity=0.515 Sum_probs=25.3
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 227 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~ 227 (438)
.|.-++|.||||+||||++..+|..+...+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g 168 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNG 168 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 456788999999999999999998876543
No 496
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.18 E-value=0.0029 Score=52.29 Aligned_cols=27 Identities=30% Similarity=0.564 Sum_probs=23.2
Q ss_pred CCCCceEEecCCCCCHHHHHHHHHHHH
Q 013706 197 RRPPHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 197 ~~~~~~ll~GppGtGKT~la~~la~~l 223 (438)
.+.-.+++.||+|+||+++-|++|...
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 355678999999999999999999854
No 497
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.18 E-value=0.0031 Score=54.95 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=36.5
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHccCcEEEEeCcccccC
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIP 276 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~ 276 (438)
...-++|.|+.|+|||++.+.|+.+.+.. .....+. +. ........-|+.|||++.+..
T Consensus 51 ~d~~lvl~G~QG~GKStf~~~L~~~~~~d------~~~~~~~------------kd--~~~~l~~~~iveldEl~~~~k 109 (198)
T PF05272_consen 51 NDTVLVLVGKQGIGKSTFFRKLGPEYFSD------SINDFDD------------KD--FLEQLQGKWIVELDELDGLSK 109 (198)
T ss_pred CceeeeEecCCcccHHHHHHHHhHHhccC------ccccCCC------------cH--HHHHHHHhHheeHHHHhhcch
Confidence 34457899999999999999997653221 0000000 01 112233457999999998874
No 498
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.18 E-value=0.0012 Score=54.95 Aligned_cols=24 Identities=33% Similarity=0.576 Sum_probs=21.9
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHH
Q 013706 202 MAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 202 ~ll~GppGtGKT~la~~la~~l~~ 225 (438)
++|.|+||+|||++|+.++..+..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 678999999999999999998854
No 499
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.17 E-value=0.0088 Score=55.43 Aligned_cols=28 Identities=25% Similarity=0.365 Sum_probs=23.9
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.+..++|.||+|+|||+++..+|..+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3557889999999999999999987754
No 500
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.17 E-value=0.00057 Score=64.86 Aligned_cols=49 Identities=27% Similarity=0.354 Sum_probs=38.1
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI 228 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~ 228 (438)
..+++-.-.+.+++++.+ ...++|+.||||.||||+|.++|+.+...|.
T Consensus 244 ~~ledY~L~dkl~eRL~e---------------------raeGILIAG~PGaGKsTFaqAlAefy~~~Gk 292 (604)
T COG1855 244 LSLEDYGLSDKLKERLEE---------------------RAEGILIAGAPGAGKSTFAQALAEFYASQGK 292 (604)
T ss_pred echhhcCCCHHHHHHHHh---------------------hhcceEEecCCCCChhHHHHHHHHHHHhcCc
Confidence 345555556666666665 3468999999999999999999999987664
Done!