Query 013706
Match_columns 438
No_of_seqs 366 out of 3259
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 15:35:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013706.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013706hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 4.6E-40 1.6E-44 311.1 17.4 236 158-435 144-391 (405)
2 4b4t_I 26S protease regulatory 100.0 3.6E-39 1.2E-43 305.4 15.9 236 158-435 178-425 (437)
3 4b4t_H 26S protease regulatory 100.0 3.5E-38 1.2E-42 301.6 15.9 236 158-435 205-452 (467)
4 4b4t_L 26S protease subunit RP 100.0 4.7E-38 1.6E-42 302.5 16.9 237 158-436 177-425 (437)
5 4b4t_M 26S protease regulatory 100.0 2.2E-38 7.4E-43 304.6 13.5 237 158-436 177-425 (434)
6 4b4t_K 26S protease regulatory 100.0 5.7E-37 1.9E-41 294.6 15.5 235 158-434 168-415 (428)
7 3cf2_A TER ATPase, transitiona 100.0 5.8E-36 2E-40 307.3 1.7 244 159-435 474-745 (806)
8 3cf2_A TER ATPase, transitiona 100.0 2.5E-34 8.4E-39 295.3 9.6 245 159-436 201-462 (806)
9 1xwi_A SKD1 protein; VPS4B, AA 100.0 9.3E-32 3.2E-36 253.2 18.9 245 159-435 9-301 (322)
10 3syl_A Protein CBBX; photosynt 100.0 2.7E-31 9.2E-36 249.8 20.7 262 154-429 22-290 (309)
11 3eie_A Vacuolar protein sortin 100.0 1.2E-31 4.1E-36 253.1 15.3 245 159-436 15-301 (322)
12 2qp9_X Vacuolar protein sortin 100.0 6.7E-31 2.3E-35 250.7 19.0 245 159-436 48-334 (355)
13 3cf0_A Transitional endoplasmi 100.0 5.7E-31 2E-35 246.0 9.0 244 159-435 12-283 (301)
14 2zan_A Vacuolar protein sortin 100.0 7.3E-30 2.5E-34 250.6 16.4 245 159-435 131-423 (444)
15 2x8a_A Nuclear valosin-contain 100.0 2.6E-30 8.8E-35 237.4 11.1 250 158-435 6-266 (274)
16 3hu3_A Transitional endoplasmi 100.0 3.5E-29 1.2E-33 246.9 14.1 244 160-436 202-462 (489)
17 2ce7_A Cell division protein F 100.0 2.5E-28 8.4E-33 238.7 19.7 233 159-435 13-258 (476)
18 3d8b_A Fidgetin-like protein 1 100.0 3.6E-28 1.2E-32 232.3 18.9 244 159-435 81-336 (357)
19 1lv7_A FTSH; alpha/beta domain 100.0 5.4E-28 1.9E-32 221.0 18.9 232 159-434 9-253 (257)
20 2qz4_A Paraplegin; AAA+, SPG7, 100.0 1.8E-28 6.3E-33 224.8 13.5 234 160-435 4-251 (262)
21 3vfd_A Spastin; ATPase, microt 100.0 7.7E-28 2.6E-32 233.0 17.1 243 160-435 113-367 (389)
22 3h4m_A Proteasome-activating n 100.0 7.8E-28 2.7E-32 223.5 15.9 235 159-435 14-260 (285)
23 3b9p_A CG5977-PA, isoform A; A 100.0 4.6E-28 1.6E-32 226.4 14.1 244 159-435 18-274 (297)
24 2dhr_A FTSH; AAA+ protein, hex 99.9 1E-26 3.4E-31 228.6 17.6 233 159-435 28-273 (499)
25 4gpm_A Engineered protein OR26 99.9 3.6E-26 1.2E-30 194.6 13.3 129 2-139 35-163 (169)
26 1ixz_A ATP-dependent metallopr 99.9 5.8E-25 2E-29 200.5 16.9 229 159-430 13-253 (254)
27 2r62_A Cell division protease 99.9 7.4E-28 2.5E-32 221.5 -3.8 233 160-435 9-255 (268)
28 3hws_A ATP-dependent CLP prote 99.9 1.7E-24 5.9E-29 207.7 17.3 256 155-428 7-344 (363)
29 1ypw_A Transitional endoplasmi 99.9 1.1E-27 3.7E-32 250.6 -7.0 216 160-408 475-702 (806)
30 1iy2_A ATP-dependent metallopr 99.9 4.5E-24 1.5E-28 197.2 15.5 228 159-430 37-277 (278)
31 1ofh_A ATP-dependent HSL prote 99.9 1.6E-23 5.5E-28 196.7 19.4 259 156-433 8-299 (310)
32 1g41_A Heat shock protein HSLU 99.9 5.3E-23 1.8E-27 198.0 22.5 258 155-431 7-431 (444)
33 1d9s_A Cyclin-dependent kinase 99.9 1.5E-24 5E-29 178.1 8.4 126 2-137 10-136 (136)
34 3lvq_E ARF-GAP with SH3 domain 99.9 6.6E-24 2.3E-28 212.2 14.4 128 5-141 133-269 (497)
35 4gpm_A Engineered protein OR26 99.9 1.2E-23 4.2E-28 178.9 12.6 127 6-141 6-132 (169)
36 2jab_A H10-2-G3; HER2, darpin, 99.9 7.7E-24 2.6E-28 173.8 10.8 124 3-135 13-136 (136)
37 3twr_A Tankyrase-2; ankyrin re 99.9 4E-23 1.4E-27 175.3 15.2 124 3-136 41-164 (165)
38 3t15_A Ribulose bisphosphate c 99.9 3.6E-23 1.2E-27 192.1 15.2 163 195-384 32-220 (293)
39 3c5r_A BARD-1, BRCA1-associate 99.9 1.3E-23 4.4E-28 172.6 10.7 124 2-134 8-131 (137)
40 3pfi_A Holliday junction ATP-d 99.9 7.2E-23 2.5E-27 194.7 17.3 206 160-432 27-253 (338)
41 1n0r_A 4ANK, 4 ankyrin repeats 99.9 2.8E-23 9.6E-28 167.5 11.9 126 3-137 1-126 (126)
42 3pvs_A Replication-associated 99.9 3E-23 1E-27 202.7 14.0 209 159-431 23-242 (447)
43 1bi7_B P16INK4A, MTS1, multipl 99.9 7.4E-24 2.5E-28 178.2 7.8 131 2-142 10-141 (156)
44 3v30_A DNA-binding protein rfx 99.9 2E-23 6.7E-28 178.5 10.5 125 3-136 35-159 (172)
45 1um8_A ATP-dependent CLP prote 99.9 1.6E-22 5.5E-27 195.0 18.1 261 153-429 11-361 (376)
46 3f6q_A Integrin-linked protein 99.9 7.3E-23 2.5E-27 176.2 13.6 126 3-137 38-163 (179)
47 1awc_B Protein (GA binding pro 99.9 6.2E-23 2.1E-27 171.9 12.3 120 3-131 33-152 (153)
48 3aaa_C Myotrophin, protein V-1 99.9 5.5E-23 1.9E-27 165.5 10.4 109 3-120 6-114 (123)
49 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.3E-22 4.6E-27 172.9 13.3 129 3-140 13-141 (169)
50 3uk6_A RUVB-like 2; hexameric 99.9 3.2E-22 1.1E-26 192.5 16.8 217 160-433 42-330 (368)
51 3t8k_A Uncharacterized protein 99.9 2.7E-23 9.2E-28 179.8 7.3 128 3-135 37-177 (186)
52 3v31_A Ankyrin repeat family A 99.9 1.4E-22 4.9E-27 172.2 11.7 129 3-140 2-130 (167)
53 3m6a_A ATP-dependent protease 99.9 9.2E-23 3.1E-27 204.7 12.1 231 161-431 80-339 (543)
54 1ihb_A P18-INK4C(INK6), cyclin 99.9 1E-22 3.4E-27 172.2 10.5 125 3-137 4-128 (162)
55 2rfm_A Putative ankyrin repeat 99.9 2.1E-22 7E-27 175.4 11.9 131 2-141 33-163 (192)
56 3v31_A Ankyrin repeat family A 99.9 1.8E-22 6.1E-27 171.6 11.2 127 2-137 34-160 (167)
57 4b93_B Ankyrin repeat domain-c 99.9 1.2E-22 4E-27 186.7 10.7 131 2-141 84-214 (269)
58 2vge_A RELA-associated inhibit 99.9 1.9E-22 6.4E-27 180.8 11.7 130 3-141 20-152 (229)
59 1ypw_A Transitional endoplasmi 99.9 2.1E-22 7.1E-27 210.7 13.8 244 159-435 201-461 (806)
60 2c9o_A RUVB-like 1; hexameric 99.9 7.7E-22 2.6E-26 194.6 16.8 103 160-279 35-143 (456)
61 4fcw_A Chaperone protein CLPB; 99.9 9.1E-22 3.1E-26 184.8 15.3 223 157-407 11-281 (311)
62 2rfm_A Putative ankyrin repeat 99.9 1.9E-22 6.5E-27 175.6 9.4 125 2-135 66-190 (192)
63 1bd8_A P19INK4D CDK4/6 inhibit 99.9 5.8E-22 2E-26 166.4 11.3 122 4-134 2-123 (156)
64 4b93_B Ankyrin repeat domain-c 99.9 4.4E-22 1.5E-26 182.8 11.0 120 2-132 117-236 (269)
65 1ycs_B 53BP2, P53BP2; ankyrin 99.9 6.2E-22 2.1E-26 178.7 11.6 130 3-140 36-167 (239)
66 2etb_A Transient receptor pote 99.9 4.2E-22 1.4E-26 181.7 10.6 132 3-141 89-250 (256)
67 3ehr_A Osteoclast-stimulating 99.9 2.9E-22 9.8E-27 178.7 9.2 131 3-142 72-203 (222)
68 1n0q_A 3ANK, 3 ankyrin repeats 99.9 1.1E-21 3.9E-26 149.4 11.2 93 3-103 1-93 (93)
69 2bjv_A PSP operon transcriptio 99.9 9.4E-22 3.2E-26 180.4 12.6 209 159-405 3-241 (265)
70 2y1l_E Darpin-8.4; hydrolase-i 99.9 9E-22 3.1E-26 167.7 11.4 125 2-135 45-169 (169)
71 3jxi_A Vanilloid receptor-rela 99.9 5.1E-22 1.8E-26 181.5 9.5 129 3-140 92-253 (260)
72 1hqc_A RUVB; extended AAA-ATPa 99.9 3.6E-21 1.2E-25 181.8 15.5 187 160-404 10-218 (324)
73 1ikn_D Protein (I-kappa-B-alph 99.9 3.8E-21 1.3E-25 173.0 14.6 132 3-139 77-211 (236)
74 3twr_A Tankyrase-2; ankyrin re 99.9 1.6E-21 5.4E-26 165.4 11.4 131 3-141 7-137 (165)
75 1ihb_A P18-INK4C(INK6), cyclin 99.9 9E-22 3.1E-26 166.3 9.7 126 2-137 36-162 (162)
76 3v30_A DNA-binding protein rfx 99.9 1.8E-21 6.3E-26 166.2 11.7 131 3-141 1-131 (172)
77 3f6q_A Integrin-linked protein 99.9 2.1E-21 7.1E-26 167.0 12.0 131 3-141 4-134 (179)
78 1ojl_A Transcriptional regulat 99.9 4.1E-22 1.4E-26 185.7 8.1 204 162-404 2-235 (304)
79 3deo_A Signal recognition part 99.9 4.6E-22 1.6E-26 171.8 7.5 108 3-119 43-151 (183)
80 1awc_B Protein (GA binding pro 99.9 1.7E-21 5.8E-26 163.1 10.0 128 3-140 1-128 (153)
81 2f8y_A Notch homolog 1, transl 99.9 3.8E-21 1.3E-25 171.3 12.8 131 2-140 56-186 (223)
82 3pxi_A Negative regulator of g 99.9 4.2E-21 1.4E-25 201.2 15.0 215 162-407 491-727 (758)
83 2rfa_A Transient receptor pote 99.8 3.1E-21 1.1E-25 173.0 12.0 128 2-138 35-184 (232)
84 2pnn_A Transient receptor pote 99.8 1.2E-21 4.1E-26 180.4 9.5 125 3-136 100-257 (273)
85 2rfa_A Transient receptor pote 99.8 4.6E-21 1.6E-25 171.9 12.8 130 3-140 2-149 (232)
86 1yyh_A HN1;, notch 1, ankyrin 99.8 3.3E-21 1.1E-25 175.5 11.1 132 2-141 88-219 (253)
87 2dzn_A Probable 26S proteasome 99.8 8.1E-21 2.8E-25 169.7 13.0 126 3-137 71-200 (228)
88 1oy3_D Transcription factor in 99.8 5.7E-21 2E-25 176.3 12.3 134 3-141 77-254 (282)
89 3aji_A 26S proteasome non-ATPa 99.8 5.5E-21 1.9E-25 171.2 11.9 130 2-140 71-200 (231)
90 3aji_A 26S proteasome non-ATPa 99.8 7.7E-21 2.6E-25 170.3 12.7 129 2-139 38-166 (231)
91 3ljn_A Hypothetical protein; a 99.8 4.5E-21 1.5E-25 184.2 11.5 130 3-141 137-273 (364)
92 3hra_A Ankyrin repeat family p 99.8 5.4E-21 1.8E-25 167.5 10.9 131 2-141 37-174 (201)
93 4hbd_A KN motif and ankyrin re 99.8 7.6E-21 2.6E-25 175.4 12.4 123 2-133 109-237 (276)
94 1ikn_D Protein (I-kappa-B-alph 99.8 6.5E-21 2.2E-25 171.5 11.2 129 3-140 44-179 (236)
95 2xai_A ASB-9, ankyrin repeat a 99.8 7.8E-21 2.7E-25 173.8 11.9 128 3-140 2-129 (261)
96 3ui2_A Signal recognition part 99.8 3.6E-21 1.2E-25 174.2 9.4 108 3-119 44-152 (244)
97 1yyh_A HN1;, notch 1, ankyrin 99.8 5.5E-21 1.9E-25 174.0 10.4 130 2-140 55-185 (253)
98 2l6b_A NR1C; ankyrin, consensu 99.8 4.9E-21 1.7E-25 152.0 8.7 106 2-115 7-112 (115)
99 3hra_A Ankyrin repeat family p 99.8 1.3E-20 4.4E-25 165.1 12.2 125 3-135 4-129 (201)
100 1k1a_A B-cell lymphoma 3-encod 99.8 1.1E-20 3.7E-25 170.4 11.8 135 2-141 77-212 (241)
101 1s70_B 130 kDa myosin-binding 99.8 1.2E-20 4.1E-25 175.9 12.5 131 2-141 71-261 (299)
102 1r6b_X CLPA protein; AAA+, N-t 99.8 9.2E-21 3.1E-25 199.0 12.9 210 162-404 458-715 (758)
103 1bd8_A P19INK4D CDK4/6 inhibit 99.8 7.5E-21 2.6E-25 159.5 9.7 122 2-134 34-155 (156)
104 2f8y_A Notch homolog 1, transl 99.8 1.7E-20 5.8E-25 167.1 12.4 130 2-140 23-153 (223)
105 1oy3_D Transcription factor in 99.8 8.7E-21 3E-25 175.1 10.8 130 2-140 7-186 (282)
106 2etb_A Transient receptor pote 99.8 5.1E-21 1.7E-25 174.4 9.0 129 2-138 41-207 (256)
107 3kea_A K1L; tropism, ANK repea 99.8 6.3E-21 2.2E-25 176.8 9.7 126 2-138 29-155 (285)
108 2xai_A ASB-9, ankyrin repeat a 99.8 2.7E-20 9.2E-25 170.2 12.2 128 2-139 34-161 (261)
109 1k1a_A B-cell lymphoma 3-encod 99.8 4E-20 1.4E-24 166.6 12.2 130 2-140 44-178 (241)
110 3d9h_A CDNA FLJ77766, highly s 99.8 3.7E-20 1.3E-24 171.6 12.2 128 2-139 57-184 (285)
111 2dzn_A Probable 26S proteasome 99.8 5.4E-20 1.8E-24 164.3 12.7 124 3-135 35-163 (228)
112 3d9h_A CDNA FLJ77766, highly s 99.8 7E-20 2.4E-24 169.7 13.7 125 3-138 124-248 (285)
113 3b7b_A Euchromatic histone-lys 99.8 6E-20 2E-24 165.1 12.8 126 4-137 77-202 (237)
114 2pnn_A Transient receptor pote 99.8 1.7E-20 5.7E-25 172.7 9.3 128 3-139 53-220 (273)
115 3b7b_A Euchromatic histone-lys 99.8 5.9E-20 2E-24 165.2 12.6 129 2-139 9-138 (237)
116 1qvr_A CLPB protein; coiled co 99.8 2.4E-19 8.1E-24 189.9 19.1 219 161-407 557-822 (854)
117 1d2n_A N-ethylmaleimide-sensit 99.8 1.9E-19 6.6E-24 165.5 16.1 173 197-403 62-248 (272)
118 3jxi_A Vanilloid receptor-rela 99.8 1.8E-20 6.1E-25 171.2 8.8 133 2-138 44-211 (260)
119 1ycs_B 53BP2, P53BP2; ankyrin 99.8 1.4E-20 4.8E-25 169.8 6.6 129 3-141 4-132 (239)
120 3te6_A Regulatory protein SIR3 99.8 3.6E-19 1.2E-23 164.7 15.6 241 164-433 22-315 (318)
121 2chg_A Replication factor C sm 99.8 1.3E-18 4.4E-23 154.8 18.3 203 160-431 15-224 (226)
122 3kea_A K1L; tropism, ANK repea 99.8 3E-20 1E-24 172.2 7.7 128 3-140 61-189 (285)
123 1sw6_A Regulatory protein SWI6 99.8 1.7E-20 5.7E-25 177.5 6.0 135 2-141 129-312 (327)
124 1s70_B 130 kDa myosin-binding 99.8 7.9E-20 2.7E-24 170.4 10.4 121 3-132 39-159 (299)
125 1n11_A Ankyrin; clathrin, BAND 99.8 7.1E-20 2.4E-24 180.2 10.5 127 2-137 12-138 (437)
126 1g8p_A Magnesium-chelatase 38 99.8 1.6E-19 5.5E-24 172.4 12.6 231 159-435 21-324 (350)
127 1n11_A Ankyrin; clathrin, BAND 99.8 1.1E-19 3.8E-24 178.8 11.9 129 3-140 244-372 (437)
128 1wdy_A 2-5A-dependent ribonucl 99.8 2.1E-19 7E-24 165.8 12.9 130 3-140 147-281 (285)
129 3jue_A Arfgap with coiled-coil 99.8 9.4E-20 3.2E-24 173.9 10.3 124 4-136 199-325 (368)
130 3ljn_A Hypothetical protein; a 99.8 1.1E-19 3.6E-24 174.6 10.6 134 3-141 83-240 (364)
131 3pxg_A Negative regulator of g 99.8 6.9E-19 2.4E-23 173.7 16.2 177 160-378 178-360 (468)
132 1bi7_B P16INK4A, MTS1, multipl 99.8 4.3E-20 1.5E-24 155.1 6.3 105 2-115 43-148 (156)
133 4g8k_A 2-5A-dependent ribonucl 99.8 1.4E-19 4.9E-24 171.7 10.5 132 3-142 167-303 (337)
134 3t8k_A Uncharacterized protein 99.8 8.4E-20 2.9E-24 157.8 8.0 129 4-142 6-151 (186)
135 1dcq_A PYK2-associated protein 99.8 2.7E-19 9.3E-24 164.9 11.6 124 5-137 131-263 (278)
136 2v1u_A Cell division control p 99.8 3.1E-19 1.1E-23 172.7 12.4 231 162-434 19-277 (387)
137 1wdy_A 2-5A-dependent ribonucl 99.8 2.6E-19 8.9E-24 165.1 11.2 129 3-140 4-133 (285)
138 2fo1_E LIN-12 protein; beta-ba 99.8 1.8E-19 6.2E-24 173.5 10.2 127 2-137 233-371 (373)
139 1ny5_A Transcriptional regulat 99.8 8.3E-19 2.8E-23 168.9 14.5 219 161-430 136-384 (387)
140 1r6b_X CLPA protein; AAA+, N-t 99.8 3.3E-18 1.1E-22 179.6 20.0 243 159-433 183-433 (758)
141 2b0o_E UPLC1; arfgap, structur 99.8 2.4E-19 8.2E-24 167.1 10.2 124 5-137 152-284 (301)
142 3utm_A Tankyrase-1; tankyrase, 99.8 3.7E-19 1.3E-23 169.3 11.4 130 3-140 23-152 (351)
143 1sxj_A Activator 1 95 kDa subu 99.8 5.8E-19 2E-23 176.6 13.2 200 160-401 37-256 (516)
144 3utm_A Tankyrase-1; tankyrase, 99.8 6.9E-19 2.3E-23 167.5 12.9 106 2-115 56-161 (351)
145 3bos_A Putative DNA replicatio 99.8 1.8E-18 6.2E-23 155.9 14.2 186 198-431 51-241 (242)
146 2vge_A RELA-associated inhibit 99.8 2E-19 6.9E-24 161.0 7.1 111 2-120 52-165 (229)
147 2qby_B CDC6 homolog 3, cell di 99.8 2.3E-18 7.9E-23 166.5 15.1 226 161-434 19-271 (384)
148 3u61_B DNA polymerase accessor 99.8 1E-18 3.6E-23 164.9 11.8 185 160-401 24-220 (324)
149 3eu9_A Huntingtin-interacting 99.8 8.8E-19 3E-23 157.4 10.3 129 3-140 75-205 (240)
150 1n0q_A 3ANK, 3 ankyrin repeats 99.8 8.8E-19 3E-23 133.3 8.7 92 40-136 1-92 (93)
151 1njg_A DNA polymerase III subu 99.8 3E-17 1E-21 148.0 20.0 202 160-430 21-248 (250)
152 2r44_A Uncharacterized protein 99.8 9.1E-19 3.1E-23 165.8 10.2 228 159-434 24-298 (331)
153 3eu9_A Huntingtin-interacting 99.8 1.9E-18 6.5E-23 155.2 11.7 126 3-137 8-134 (240)
154 1jbk_A CLPB protein; beta barr 99.8 5.5E-19 1.9E-23 153.4 7.2 167 159-345 19-194 (195)
155 3pxi_A Negative regulator of g 99.8 7E-18 2.4E-22 176.8 16.8 202 160-404 178-385 (758)
156 1d9s_A Cyclin-dependent kinase 99.8 5.4E-19 1.8E-23 144.7 6.4 93 2-103 43-136 (136)
157 2fo1_E LIN-12 protein; beta-ba 99.8 1.3E-18 4.6E-23 167.5 10.1 125 2-135 164-302 (373)
158 2jab_A H10-2-G3; HER2, darpin, 99.8 3.9E-18 1.3E-22 139.5 11.1 92 2-101 45-136 (136)
159 1qvr_A CLPB protein; coiled co 99.8 8.6E-18 2.9E-22 178.0 16.6 193 159-379 167-368 (854)
160 2chq_A Replication factor C sm 99.8 1E-17 3.4E-22 157.7 15.2 189 159-402 14-209 (319)
161 2b0o_E UPLC1; arfgap, structur 99.8 1.3E-18 4.3E-23 162.3 8.4 107 3-124 189-298 (301)
162 1in4_A RUVB, holliday junction 99.7 3.9E-17 1.3E-21 154.4 18.7 207 160-433 23-250 (334)
163 4g8k_A 2-5A-dependent ribonucl 99.7 3.5E-18 1.2E-22 162.1 10.6 127 4-139 25-152 (337)
164 2z4s_A Chromosomal replication 99.7 4.7E-18 1.6E-22 166.3 11.7 197 199-432 130-331 (440)
165 3dzd_A Transcriptional regulat 99.7 1.1E-18 3.7E-23 166.7 6.8 202 162-404 129-361 (368)
166 1sxj_D Activator 1 41 kDa subu 99.7 1.9E-17 6.6E-22 158.1 15.2 189 160-404 35-242 (353)
167 1l8q_A Chromosomal replication 99.7 3E-17 1E-21 154.8 16.1 200 198-433 36-240 (324)
168 1sw6_A Regulatory protein SWI6 99.7 1.9E-18 6.5E-23 163.3 7.3 112 2-120 162-325 (327)
169 2zgd_A 3 repeat synthetic anky 99.7 6.9E-18 2.4E-22 132.6 9.3 87 3-97 23-109 (110)
170 1n0r_A 4ANK, 4 ankyrin repeats 99.7 1.4E-17 4.7E-22 133.8 11.1 94 2-103 33-126 (126)
171 1dcq_A PYK2-associated protein 99.7 1E-17 3.5E-22 154.3 10.4 94 3-104 168-264 (278)
172 2qby_A CDC6 homolog 1, cell di 99.7 3.6E-17 1.2E-21 158.0 14.5 229 162-434 20-273 (386)
173 1iqp_A RFCS; clamp loader, ext 99.7 4.3E-17 1.5E-21 153.9 14.7 188 160-402 23-217 (327)
174 3n70_A Transport activator; si 99.7 8.2E-18 2.8E-22 139.1 8.0 138 163-336 2-144 (145)
175 3lvq_E ARF-GAP with SH3 domain 99.7 1.3E-17 4.5E-22 166.6 10.5 98 2-107 169-269 (497)
176 1sxj_B Activator 1 37 kDa subu 99.7 1.9E-16 6.6E-21 149.1 17.9 184 160-402 19-214 (323)
177 3f9v_A Minichromosome maintena 99.7 7.2E-18 2.5E-22 170.5 6.7 246 162-435 295-589 (595)
178 1jr3_A DNA polymerase III subu 99.7 5.4E-16 1.9E-20 149.2 18.9 188 160-403 14-227 (373)
179 2l6b_A NR1C; ankyrin, consensu 99.7 4.2E-17 1.4E-21 129.1 8.9 102 36-142 4-105 (115)
180 3ehr_A Osteoclast-stimulating 99.7 1.6E-17 5.6E-22 147.8 7.3 104 2-112 104-207 (222)
181 3c5r_A BARD-1, BRCA1-associate 99.7 4.3E-17 1.5E-21 133.4 8.7 105 31-141 1-105 (137)
182 2aja_A Ankyrin repeat family p 99.7 1.9E-18 6.6E-23 165.5 0.5 124 3-136 91-223 (376)
183 1fnn_A CDC6P, cell division co 99.7 7.3E-16 2.5E-20 149.0 18.7 228 162-433 17-274 (389)
184 2p65_A Hypothetical protein PF 99.7 1.7E-17 5.9E-22 143.2 5.8 160 159-337 19-187 (187)
185 3co5_A Putative two-component 99.7 1.8E-18 6.3E-23 142.6 -0.7 133 163-336 5-142 (143)
186 3aaa_C Myotrophin, protein V-1 99.7 6.8E-17 2.3E-21 129.6 7.9 77 2-82 38-114 (123)
187 4hbd_A KN motif and ankyrin re 99.7 1.2E-16 3.9E-21 147.3 10.4 125 2-135 143-273 (276)
188 1sxj_E Activator 1 40 kDa subu 99.7 6.4E-16 2.2E-20 147.6 14.8 196 159-409 11-249 (354)
189 3deo_A Signal recognition part 99.7 6.9E-17 2.4E-21 139.2 7.0 106 2-133 74-180 (183)
190 3jue_A Arfgap with coiled-coil 99.7 1.8E-16 6.1E-21 151.2 10.4 106 2-115 233-341 (368)
191 3k1j_A LON protease, ATP-depen 99.7 1.5E-16 5.3E-21 162.0 10.0 148 256-432 195-374 (604)
192 2zgd_A 3 repeat synthetic anky 99.6 2.7E-16 9.3E-21 123.4 7.3 95 32-131 15-109 (110)
193 2aja_A Ankyrin repeat family p 99.6 2.3E-17 8E-22 157.9 1.0 123 3-141 127-254 (376)
194 1sxj_C Activator 1 40 kDa subu 99.6 2.9E-15 1E-19 142.1 15.2 183 159-400 22-215 (340)
195 3ui2_A Signal recognition part 99.6 8.7E-16 3E-20 138.7 9.3 107 2-134 75-182 (244)
196 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 3.4E-16 1.2E-20 154.1 3.3 151 162-349 22-196 (500)
197 1a5t_A Delta prime, HOLB; zinc 99.5 2.4E-13 8.1E-18 128.4 15.8 131 199-349 24-180 (334)
198 1w5s_A Origin recognition comp 99.5 3.6E-13 1.2E-17 131.1 16.4 218 162-404 22-273 (412)
199 2gno_A DNA polymerase III, gam 99.5 9.2E-14 3.2E-18 128.8 9.9 126 199-349 18-152 (305)
200 3f8t_A Predicted ATPase involv 99.4 1E-12 3.4E-17 125.6 10.3 238 153-434 204-484 (506)
201 3cmw_A Protein RECA, recombina 99.1 3.4E-10 1.2E-14 124.5 12.9 149 156-309 1014-1217(1706)
202 4akg_A Glutathione S-transfera 99.1 2.6E-10 8.9E-15 130.8 9.4 139 199-352 1267-1434(2695)
203 2qen_A Walker-type ATPase; unk 99.0 7.3E-09 2.5E-13 98.1 17.9 159 162-351 12-218 (350)
204 3ec2_A DNA replication protein 99.0 1.7E-09 5.9E-14 92.3 10.0 101 198-309 37-141 (180)
205 2w58_A DNAI, primosome compone 99.0 1.2E-09 4E-14 95.2 8.6 72 199-276 54-129 (202)
206 1jr3_D DNA polymerase III, del 98.9 4.2E-09 1.4E-13 99.7 10.3 161 198-403 17-191 (343)
207 2kjq_A DNAA-related protein; s 98.9 5.8E-10 2E-14 91.9 3.1 63 198-276 35-97 (149)
208 2fna_A Conserved hypothetical 98.9 5.3E-08 1.8E-12 92.3 17.2 156 162-350 13-223 (357)
209 2qgz_A Helicase loader, putati 98.8 7.4E-09 2.5E-13 96.1 7.4 73 199-275 152-227 (308)
210 2r2a_A Uncharacterized protein 98.8 8.8E-09 3E-13 88.9 6.3 128 199-337 5-154 (199)
211 1tue_A Replication protein E1; 98.7 1.4E-08 4.9E-13 86.4 6.3 26 199-224 58-83 (212)
212 2vhj_A Ntpase P4, P4; non- hyd 98.6 2.7E-08 9.3E-13 91.1 6.3 105 199-310 123-235 (331)
213 1u0j_A DNA replication protein 98.6 1.7E-08 5.7E-13 90.2 4.7 25 199-223 104-128 (267)
214 3vkg_A Dynein heavy chain, cyt 98.5 7E-07 2.4E-11 103.6 12.3 139 198-351 1303-1471(3245)
215 1ye8_A Protein THEP1, hypothet 98.4 1.2E-06 4E-11 74.2 10.1 24 201-224 2-25 (178)
216 4akg_A Glutathione S-transfera 98.3 4E-07 1.4E-11 104.9 6.7 129 200-347 646-791 (2695)
217 3cmu_A Protein RECA, recombina 98.3 1.4E-06 4.7E-11 97.4 10.1 109 196-308 1424-1561(2050)
218 2krk_A 26S protease regulatory 98.3 5.6E-07 1.9E-11 65.9 4.2 78 332-436 7-84 (86)
219 3kw6_A 26S protease regulatory 98.2 1.9E-06 6.4E-11 62.1 5.2 76 334-436 1-76 (78)
220 2orw_A Thymidine kinase; TMTK, 98.1 1.5E-06 5E-11 74.1 3.7 26 200-225 4-29 (184)
221 3vkg_A Dynein heavy chain, cyt 97.9 2.1E-05 7.2E-10 91.6 8.8 121 200-346 605-750 (3245)
222 2w0m_A SSO2452; RECA, SSPF, un 97.9 9.1E-05 3.1E-09 65.2 10.9 27 198-224 22-48 (235)
223 3upu_A ATP-dependent DNA helic 97.8 7.2E-05 2.5E-09 73.3 11.0 88 200-301 46-156 (459)
224 3e1s_A Exodeoxyribonuclease V, 97.8 9.2E-06 3.1E-10 81.7 4.6 91 199-304 204-310 (574)
225 2ze6_A Isopentenyl transferase 97.7 0.00093 3.2E-08 59.7 15.4 135 201-349 3-139 (253)
226 3aji_B S6C, proteasome (prosom 97.7 2.1E-05 7.2E-10 57.2 3.6 74 336-436 1-74 (83)
227 3crm_A TRNA delta(2)-isopenten 97.7 3.7E-05 1.3E-09 70.8 6.0 98 200-310 6-104 (323)
228 1xp8_A RECA protein, recombina 97.7 0.00016 5.3E-09 68.3 10.4 107 198-308 73-208 (366)
229 3vlf_B 26S protease regulatory 97.7 2E-05 6.9E-10 57.9 3.4 73 337-436 2-74 (88)
230 2r8r_A Sensor protein; KDPD, P 97.7 0.0003 1E-08 61.0 11.2 74 199-275 6-97 (228)
231 2b8t_A Thymidine kinase; deoxy 97.7 0.00021 7.2E-09 62.3 10.3 28 200-227 13-40 (223)
232 3kl4_A SRP54, signal recogniti 97.7 0.00036 1.2E-08 67.1 12.4 30 198-227 96-125 (433)
233 3umf_A Adenylate kinase; rossm 97.6 0.00016 5.6E-09 62.8 8.6 38 198-244 28-65 (217)
234 2dr3_A UPF0273 protein PH0284; 97.6 0.00021 7.3E-09 63.5 9.6 27 198-224 22-48 (247)
235 1z6t_A APAF-1, apoptotic prote 97.6 0.00066 2.2E-08 68.8 14.4 48 161-222 123-170 (591)
236 2zr9_A Protein RECA, recombina 97.6 9.2E-05 3.1E-09 69.6 7.1 75 198-276 60-153 (349)
237 3dm5_A SRP54, signal recogniti 97.6 0.0026 8.8E-08 61.2 17.2 30 198-227 99-128 (443)
238 1svm_A Large T antigen; AAA+ f 97.6 7.8E-05 2.7E-09 70.6 6.3 64 196-276 166-230 (377)
239 1u94_A RECA protein, recombina 97.6 0.00013 4.4E-09 68.6 7.7 75 198-276 62-155 (356)
240 3hr8_A Protein RECA; alpha and 97.6 0.00037 1.3E-08 65.3 10.7 75 198-276 60-153 (356)
241 1qhx_A CPT, protein (chloramph 97.5 3.5E-05 1.2E-09 65.0 2.9 27 199-225 3-29 (178)
242 2i3b_A HCR-ntpase, human cance 97.5 0.00051 1.7E-08 58.4 10.2 27 201-227 3-29 (189)
243 2cvh_A DNA repair and recombin 97.5 0.00012 4.2E-09 63.8 6.2 24 198-221 19-42 (220)
244 2fz4_A DNA repair protein RAD2 97.5 0.00018 6.1E-09 63.8 7.3 24 200-223 109-132 (237)
245 3trf_A Shikimate kinase, SK; a 97.5 5E-05 1.7E-09 64.5 3.3 27 199-225 5-31 (185)
246 3vaa_A Shikimate kinase, SK; s 97.4 7E-05 2.4E-09 64.5 3.7 29 197-225 23-51 (199)
247 2ga8_A Hypothetical 39.9 kDa p 97.4 0.00012 3.9E-09 68.2 5.2 28 198-225 23-50 (359)
248 3sr0_A Adenylate kinase; phosp 97.4 9.2E-05 3.2E-09 64.0 4.1 34 201-243 2-35 (206)
249 1n0w_A DNA repair protein RAD5 97.4 0.00029 9.8E-09 62.5 7.5 25 198-222 23-47 (243)
250 2a5y_B CED-4; apoptosis; HET: 97.4 0.00047 1.6E-08 69.2 9.6 44 165-221 131-174 (549)
251 3cmu_A Protein RECA, recombina 97.4 0.00062 2.1E-08 76.6 11.0 108 198-309 731-867 (2050)
252 1w36_D RECD, exodeoxyribonucle 97.4 0.00085 2.9E-08 68.0 10.9 27 199-225 164-190 (608)
253 2ehv_A Hypothetical protein PH 97.3 0.00038 1.3E-08 61.9 7.4 24 198-221 29-52 (251)
254 4a74_A DNA repair and recombin 97.3 0.00023 7.9E-09 62.5 5.6 26 198-223 24-49 (231)
255 1nlf_A Regulatory protein REPA 97.3 0.001 3.6E-08 60.4 9.8 27 198-224 29-55 (279)
256 1gvn_B Zeta; postsegregational 97.3 0.00026 9E-09 64.6 5.7 26 198-223 32-57 (287)
257 1via_A Shikimate kinase; struc 97.3 0.00012 4E-09 61.6 3.2 26 200-225 5-30 (175)
258 1zuh_A Shikimate kinase; alpha 97.3 0.00013 4.4E-09 60.8 3.4 28 198-225 6-33 (168)
259 1y63_A LMAJ004144AAA protein; 97.3 0.00012 4.1E-09 62.2 3.1 25 198-222 9-33 (184)
260 3iij_A Coilin-interacting nucl 97.3 0.00013 4.3E-09 61.7 3.2 28 198-225 10-37 (180)
261 2iyv_A Shikimate kinase, SK; t 97.3 0.00014 4.9E-09 61.6 3.6 26 200-225 3-28 (184)
262 3kb2_A SPBC2 prophage-derived 97.3 0.00015 5.3E-09 60.5 3.6 25 201-225 3-27 (173)
263 2cdn_A Adenylate kinase; phosp 97.3 0.00018 6.2E-09 61.9 4.1 29 197-225 18-46 (201)
264 3foz_A TRNA delta(2)-isopenten 97.2 0.00095 3.3E-08 60.8 8.8 105 199-316 10-115 (316)
265 2iut_A DNA translocase FTSK; n 97.2 0.00069 2.4E-08 67.0 8.4 76 264-346 345-420 (574)
266 2z43_A DNA repair and recombin 97.2 0.00052 1.8E-08 63.9 6.8 26 198-223 106-131 (324)
267 2rhm_A Putative kinase; P-loop 97.2 0.00022 7.6E-09 60.8 4.0 28 198-225 4-31 (193)
268 3cmw_A Protein RECA, recombina 97.2 0.00079 2.7E-08 74.8 9.1 77 196-276 729-824 (1706)
269 3exa_A TRNA delta(2)-isopenten 97.2 0.001 3.5E-08 60.7 8.2 105 200-317 4-109 (322)
270 1aky_A Adenylate kinase; ATP:A 97.1 0.00024 8.2E-09 62.1 3.7 28 198-225 3-30 (220)
271 1nks_A Adenylate kinase; therm 97.1 0.00028 9.4E-09 60.1 4.0 25 201-225 3-27 (194)
272 1g5t_A COB(I)alamin adenosyltr 97.1 0.0024 8.1E-08 54.1 9.6 30 199-228 28-57 (196)
273 3ney_A 55 kDa erythrocyte memb 97.1 0.00042 1.4E-08 59.1 5.0 26 198-223 18-43 (197)
274 1w4r_A Thymidine kinase; type 97.1 0.00032 1.1E-08 59.3 4.2 25 201-225 22-47 (195)
275 1kag_A SKI, shikimate kinase I 97.1 0.00024 8.1E-09 59.4 3.4 25 200-224 5-29 (173)
276 1kht_A Adenylate kinase; phosp 97.1 0.00031 1.1E-08 59.7 4.0 26 200-225 4-29 (192)
277 3eph_A TRNA isopentenyltransfe 97.1 0.00049 1.7E-08 65.1 5.5 99 200-312 3-103 (409)
278 2c95_A Adenylate kinase 1; tra 97.1 0.00024 8.2E-09 60.7 3.1 28 198-225 8-35 (196)
279 1e6c_A Shikimate kinase; phosp 97.1 0.00026 9.1E-09 59.1 3.3 26 200-225 3-28 (173)
280 3lda_A DNA repair protein RAD5 97.1 0.0012 3.9E-08 63.1 8.1 24 198-221 177-200 (400)
281 3t61_A Gluconokinase; PSI-biol 97.1 0.00032 1.1E-08 60.3 3.8 27 199-225 18-44 (202)
282 3sfz_A APAF-1, apoptotic pepti 97.1 0.0075 2.6E-07 66.5 15.7 152 161-351 123-301 (1249)
283 3tlx_A Adenylate kinase 2; str 97.1 0.00024 8.3E-09 63.2 3.1 27 198-224 28-54 (243)
284 3a4m_A L-seryl-tRNA(SEC) kinas 97.1 0.00046 1.6E-08 62.0 4.9 29 199-227 4-32 (260)
285 1xx6_A Thymidine kinase; NESG, 97.1 0.002 6.9E-08 54.7 8.6 73 200-276 9-95 (191)
286 1ak2_A Adenylate kinase isoenz 97.1 0.00036 1.2E-08 61.6 4.1 28 198-225 15-42 (233)
287 3be4_A Adenylate kinase; malar 97.0 0.00022 7.5E-09 62.2 2.5 27 199-225 5-31 (217)
288 1zak_A Adenylate kinase; ATP:A 97.0 0.00039 1.3E-08 60.8 4.0 28 198-225 4-31 (222)
289 1ly1_A Polynucleotide kinase; 97.0 0.00029 9.8E-09 59.3 3.0 22 200-221 3-24 (181)
290 3a8t_A Adenylate isopentenyltr 97.0 0.00066 2.3E-08 62.7 5.5 26 199-224 40-65 (339)
291 1tev_A UMP-CMP kinase; ploop, 97.0 0.00025 8.4E-09 60.5 2.5 26 199-224 3-28 (196)
292 2p5t_B PEZT; postsegregational 97.0 0.00086 2.9E-08 60.0 6.2 28 197-224 30-57 (253)
293 2vli_A Antibiotic resistance p 97.0 0.00024 8.2E-09 60.0 2.3 27 199-225 5-31 (183)
294 3jvv_A Twitching mobility prot 97.0 0.0012 4.1E-08 62.0 7.3 96 199-311 123-231 (356)
295 1v5w_A DMC1, meiotic recombina 97.0 0.0012 4E-08 62.0 7.2 26 198-223 121-146 (343)
296 1nn5_A Similar to deoxythymidy 97.0 0.00053 1.8E-08 59.4 4.6 31 198-228 8-38 (215)
297 2pt5_A Shikimate kinase, SK; a 97.0 0.00036 1.2E-08 58.0 3.4 25 201-225 2-26 (168)
298 1ex7_A Guanylate kinase; subst 97.0 0.00061 2.1E-08 57.6 4.7 24 200-223 2-25 (186)
299 2bwj_A Adenylate kinase 5; pho 97.0 0.00034 1.2E-08 59.9 3.1 26 199-224 12-37 (199)
300 2wwf_A Thymidilate kinase, put 97.0 0.00066 2.3E-08 58.7 4.9 31 198-228 9-39 (212)
301 1zp6_A Hypothetical protein AT 97.0 0.00025 8.4E-09 60.4 1.9 25 198-222 8-32 (191)
302 3cm0_A Adenylate kinase; ATP-b 97.0 0.00032 1.1E-08 59.4 2.7 25 200-224 5-29 (186)
303 1zd8_A GTP:AMP phosphotransfer 97.0 0.00028 9.6E-09 62.0 2.4 27 198-224 6-32 (227)
304 3fb4_A Adenylate kinase; psych 96.9 0.00038 1.3E-08 60.6 3.1 25 201-225 2-26 (216)
305 1qf9_A UMP/CMP kinase, protein 96.9 0.00038 1.3E-08 59.2 3.1 26 199-224 6-31 (194)
306 2eyu_A Twitching motility prot 96.9 0.0037 1.3E-07 56.0 9.6 28 198-225 24-51 (261)
307 1knq_A Gluconate kinase; ALFA/ 96.9 0.00051 1.7E-08 57.5 3.7 26 199-224 8-33 (175)
308 3dl0_A Adenylate kinase; phosp 96.9 0.00032 1.1E-08 61.1 2.5 24 201-224 2-25 (216)
309 2yvu_A Probable adenylyl-sulfa 96.9 0.00093 3.2E-08 56.6 5.3 30 198-227 12-41 (186)
310 2ius_A DNA translocase FTSK; n 96.9 0.0011 3.8E-08 65.0 6.4 76 265-347 300-375 (512)
311 3lw7_A Adenylate kinase relate 96.9 0.00034 1.1E-08 58.5 2.4 23 201-224 3-25 (179)
312 3uie_A Adenylyl-sulfate kinase 96.9 0.00066 2.3E-08 58.3 4.2 30 198-227 24-53 (200)
313 4eun_A Thermoresistant glucoki 96.9 0.00064 2.2E-08 58.4 4.0 26 198-223 28-53 (200)
314 1ukz_A Uridylate kinase; trans 96.9 0.00042 1.4E-08 59.6 2.7 27 198-224 14-40 (203)
315 2plr_A DTMP kinase, probable t 96.9 0.00058 2E-08 59.1 3.5 26 200-225 5-30 (213)
316 3io5_A Recombination and repai 96.8 0.0072 2.5E-07 55.1 10.5 107 201-309 30-170 (333)
317 2r6a_A DNAB helicase, replicat 96.8 0.001 3.6E-08 64.9 5.3 28 198-225 202-229 (454)
318 1e4v_A Adenylate kinase; trans 96.8 0.00074 2.5E-08 58.7 3.6 24 201-224 2-25 (214)
319 2qor_A Guanylate kinase; phosp 96.8 0.00068 2.3E-08 58.4 3.3 26 198-223 11-36 (204)
320 3llm_A ATP-dependent RNA helic 96.8 0.0074 2.5E-07 53.1 10.1 22 199-220 76-97 (235)
321 2pbr_A DTMP kinase, thymidylat 96.7 0.0015 5E-08 55.6 5.2 27 201-227 2-28 (195)
322 2pez_A Bifunctional 3'-phospho 96.7 0.0016 5.3E-08 54.8 5.2 37 199-239 5-41 (179)
323 1vt4_I APAF-1 related killer D 96.7 0.0099 3.4E-07 62.9 11.7 42 165-221 131-172 (1221)
324 3bh0_A DNAB-like replicative h 96.7 0.0068 2.3E-07 56.0 9.6 28 198-225 67-94 (315)
325 2jaq_A Deoxyguanosine kinase; 96.7 0.001 3.4E-08 57.1 3.7 25 201-225 2-26 (205)
326 2i1q_A DNA repair and recombin 96.7 0.0017 5.9E-08 60.3 5.3 25 198-222 97-121 (322)
327 2xb4_A Adenylate kinase; ATP-b 96.7 0.001 3.6E-08 58.2 3.6 24 201-224 2-25 (223)
328 2z0h_A DTMP kinase, thymidylat 96.6 0.0014 4.7E-08 55.9 4.1 26 202-227 3-28 (197)
329 2bbw_A Adenylate kinase 4, AK4 96.6 0.0013 4.3E-08 58.6 4.0 27 198-224 26-52 (246)
330 2axn_A 6-phosphofructo-2-kinas 96.6 0.0036 1.2E-07 62.0 7.5 29 199-227 35-63 (520)
331 3r20_A Cytidylate kinase; stru 96.6 0.0013 4.5E-08 57.7 3.8 28 198-225 8-35 (233)
332 2j9r_A Thymidine kinase; TK1, 96.6 0.0031 1.1E-07 54.2 5.9 26 202-227 31-56 (214)
333 1vec_A ATP-dependent RNA helic 96.6 0.022 7.6E-07 48.6 11.5 46 264-316 148-194 (206)
334 2v54_A DTMP kinase, thymidylat 96.6 0.001 3.5E-08 57.1 2.9 25 199-223 4-28 (204)
335 3gmt_A Adenylate kinase; ssgci 96.5 0.0025 8.6E-08 55.6 5.2 26 200-225 9-34 (230)
336 1cke_A CK, MSSA, protein (cyti 96.5 0.0015 5.1E-08 57.1 3.8 25 200-224 6-30 (227)
337 1kgd_A CASK, peripheral plasma 96.5 0.0017 5.8E-08 54.7 4.0 25 199-223 5-29 (180)
338 3b6e_A Interferon-induced heli 96.5 0.0014 4.9E-08 56.6 3.6 24 200-223 49-72 (216)
339 2q6t_A DNAB replication FORK h 96.5 0.0024 8.1E-08 62.2 5.4 28 198-225 199-226 (444)
340 3tau_A Guanylate kinase, GMP k 96.5 0.0017 5.7E-08 56.2 3.8 26 198-223 7-32 (208)
341 2j41_A Guanylate kinase; GMP, 96.5 0.0016 5.6E-08 55.9 3.7 26 198-223 5-30 (207)
342 2pt7_A CAG-ALFA; ATPase, prote 96.5 0.0082 2.8E-07 55.8 8.7 25 199-223 171-195 (330)
343 3nwj_A ATSK2; P loop, shikimat 96.5 0.0017 6E-08 57.7 3.9 27 199-225 48-74 (250)
344 2px0_A Flagellar biosynthesis 96.5 0.026 8.8E-07 51.5 11.7 28 198-225 104-131 (296)
345 3iuy_A Probable ATP-dependent 96.4 0.028 9.7E-07 48.9 11.6 46 264-316 169-215 (228)
346 1qde_A EIF4A, translation init 96.4 0.035 1.2E-06 48.1 12.0 46 264-316 157-203 (224)
347 1m7g_A Adenylylsulfate kinase; 96.4 0.0018 6.3E-08 56.0 3.6 27 198-224 24-50 (211)
348 2bdt_A BH3686; alpha-beta prot 96.4 0.0016 5.6E-08 55.1 3.2 21 201-221 4-24 (189)
349 2zts_A Putative uncharacterize 96.4 0.0055 1.9E-07 54.2 6.5 25 198-222 29-53 (251)
350 2dzn_B 26S protease regulatory 96.3 0.00018 6.2E-09 52.0 -2.8 69 339-434 1-69 (82)
351 3ake_A Cytidylate kinase; CMP 96.3 0.0025 8.5E-08 54.8 4.0 25 201-225 4-28 (208)
352 3tr0_A Guanylate kinase, GMP k 96.2 0.0029 1E-07 54.2 3.9 25 199-223 7-31 (205)
353 1lvg_A Guanylate kinase, GMP k 96.2 0.0029 1E-07 54.1 3.8 25 199-223 4-28 (198)
354 2grj_A Dephospho-COA kinase; T 96.2 0.0021 7E-08 54.8 2.7 24 201-224 14-37 (192)
355 3ber_A Probable ATP-dependent 96.2 0.029 9.8E-07 49.7 10.4 46 264-316 188-234 (249)
356 3c8u_A Fructokinase; YP_612366 96.2 0.0026 8.9E-08 54.9 3.4 28 198-225 21-48 (208)
357 2orv_A Thymidine kinase; TP4A 96.2 0.0087 3E-07 51.9 6.6 92 201-310 21-125 (234)
358 1bif_A 6-phosphofructo-2-kinas 96.2 0.0069 2.4E-07 59.3 6.8 30 198-227 38-67 (469)
359 2if2_A Dephospho-COA kinase; a 96.2 0.0027 9.2E-08 54.5 3.4 21 201-221 3-23 (204)
360 3a00_A Guanylate kinase, GMP k 96.2 0.0025 8.7E-08 53.9 3.0 25 200-224 2-26 (186)
361 1uj2_A Uridine-cytidine kinase 96.2 0.0022 7.4E-08 57.3 2.7 28 198-225 21-48 (252)
362 1uf9_A TT1252 protein; P-loop, 96.1 0.0028 9.4E-08 54.3 3.2 25 198-222 7-31 (203)
363 2fwr_A DNA repair protein RAD2 96.1 0.015 5.2E-07 56.9 8.5 24 200-223 109-132 (472)
364 1q3t_A Cytidylate kinase; nucl 96.1 0.0039 1.3E-07 55.0 3.8 30 196-225 13-42 (236)
365 1ltq_A Polynucleotide kinase; 96.1 0.0028 9.6E-08 58.1 3.0 23 200-222 3-25 (301)
366 1jjv_A Dephospho-COA kinase; P 96.0 0.0026 9E-08 54.7 2.6 21 201-221 4-24 (206)
367 3ly5_A ATP-dependent RNA helic 96.0 0.046 1.6E-06 48.8 10.9 46 264-316 203-249 (262)
368 4e22_A Cytidylate kinase; P-lo 96.0 0.0034 1.2E-07 56.0 3.3 26 199-224 27-52 (252)
369 3bgw_A DNAB-like replicative h 96.0 0.023 7.9E-07 55.0 9.4 28 198-225 196-223 (444)
370 4eaq_A DTMP kinase, thymidylat 96.0 0.004 1.4E-07 54.7 3.6 28 198-225 25-52 (229)
371 3d3q_A TRNA delta(2)-isopenten 96.0 0.0032 1.1E-07 58.3 3.0 24 201-224 9-32 (340)
372 1vma_A Cell division protein F 96.0 0.015 5.2E-07 53.2 7.5 28 198-225 103-130 (306)
373 3asz_A Uridine kinase; cytidin 96.0 0.0039 1.3E-07 53.8 3.3 27 198-224 5-31 (211)
374 1sky_E F1-ATPase, F1-ATP synth 96.0 0.0076 2.6E-07 58.2 5.6 27 198-224 150-176 (473)
375 1gtv_A TMK, thymidylate kinase 95.9 0.002 6.8E-08 55.7 1.4 25 201-225 2-26 (214)
376 2gxq_A Heat resistant RNA depe 95.9 0.044 1.5E-06 46.7 10.0 19 200-218 39-57 (207)
377 3h1t_A Type I site-specific re 95.9 0.031 1E-06 56.4 10.3 29 199-227 198-226 (590)
378 2h92_A Cytidylate kinase; ross 95.9 0.0042 1.5E-07 53.9 3.4 27 199-225 3-29 (219)
379 1t6n_A Probable ATP-dependent 95.9 0.046 1.6E-06 47.2 10.1 23 200-222 52-74 (220)
380 2zj8_A DNA helicase, putative 95.9 0.057 2E-06 55.9 12.4 19 199-217 39-57 (720)
381 2f6r_A COA synthase, bifunctio 95.9 0.0036 1.2E-07 56.9 2.8 23 199-221 75-97 (281)
382 2qmh_A HPR kinase/phosphorylas 95.9 0.0033 1.1E-07 53.3 2.3 25 199-223 34-58 (205)
383 1xjc_A MOBB protein homolog; s 95.9 0.0075 2.6E-07 49.9 4.4 29 199-227 4-32 (169)
384 2v3c_C SRP54, signal recogniti 95.9 0.023 7.8E-07 54.7 8.5 29 198-226 98-126 (432)
385 1z6g_A Guanylate kinase; struc 95.9 0.0046 1.6E-07 53.8 3.3 27 197-223 21-47 (218)
386 4b3f_X DNA-binding protein smu 95.8 0.016 5.4E-07 59.2 7.8 24 200-223 206-230 (646)
387 2qt1_A Nicotinamide riboside k 95.8 0.0045 1.5E-07 53.2 3.2 26 198-223 20-45 (207)
388 3zvl_A Bifunctional polynucleo 95.8 0.0069 2.4E-07 58.3 4.7 25 199-223 258-282 (416)
389 3fmo_B ATP-dependent RNA helic 95.8 0.079 2.7E-06 48.4 11.5 47 264-316 237-284 (300)
390 3pey_A ATP-dependent RNA helic 95.8 0.077 2.6E-06 50.1 11.9 23 198-220 43-65 (395)
391 3bor_A Human initiation factor 95.8 0.05 1.7E-06 47.7 9.8 18 200-217 68-85 (237)
392 3dkp_A Probable ATP-dependent 95.8 0.058 2E-06 47.5 10.3 18 200-217 67-84 (245)
393 4gp7_A Metallophosphoesterase; 95.7 0.0048 1.6E-07 51.4 2.8 21 199-219 9-29 (171)
394 3b9q_A Chloroplast SRP recepto 95.7 0.011 3.8E-07 54.1 5.5 29 197-225 98-126 (302)
395 2yhs_A FTSY, cell division pro 95.7 0.034 1.1E-06 54.1 9.1 30 196-225 290-319 (503)
396 1rz3_A Hypothetical protein rb 95.7 0.0057 2E-07 52.4 3.4 28 198-225 21-48 (201)
397 4a1f_A DNAB helicase, replicat 95.7 0.0028 9.6E-08 58.8 1.3 28 198-225 45-72 (338)
398 3lv8_A DTMP kinase, thymidylat 95.7 0.009 3.1E-07 52.5 4.4 31 198-228 26-56 (236)
399 1tf7_A KAIC; homohexamer, hexa 95.7 0.036 1.2E-06 55.0 9.4 26 198-223 38-65 (525)
400 3fe2_A Probable ATP-dependent 95.7 0.062 2.1E-06 47.2 10.0 46 264-316 178-224 (242)
401 1vht_A Dephospho-COA kinase; s 95.7 0.0059 2E-07 53.0 3.2 23 199-221 4-26 (218)
402 1q0u_A Bstdead; DEAD protein, 95.7 0.044 1.5E-06 47.3 8.9 46 264-316 152-198 (219)
403 4edh_A DTMP kinase, thymidylat 95.6 0.0075 2.6E-07 52.2 3.8 30 199-228 6-35 (213)
404 1odf_A YGR205W, hypothetical 3 95.6 0.0077 2.6E-07 54.8 4.0 28 198-225 30-57 (290)
405 3vkw_A Replicase large subunit 95.6 0.0096 3.3E-07 57.1 4.8 23 199-221 161-183 (446)
406 2oxc_A Probable ATP-dependent 95.6 0.048 1.6E-06 47.5 9.1 47 264-316 168-215 (230)
407 2v9p_A Replication protein E1; 95.6 0.0086 2.9E-07 54.7 4.2 28 196-223 123-150 (305)
408 3thx_B DNA mismatch repair pro 95.6 0.076 2.6E-06 56.0 11.7 110 199-314 673-799 (918)
409 2pl3_A Probable ATP-dependent 95.6 0.12 4E-06 45.1 11.5 46 264-316 173-219 (236)
410 1zu4_A FTSY; GTPase, signal re 95.6 0.056 1.9E-06 49.8 9.6 30 197-226 103-132 (320)
411 3thx_A DNA mismatch repair pro 95.6 0.058 2E-06 57.0 10.8 110 200-315 663-789 (934)
412 1s2m_A Putative ATP-dependent 95.5 0.044 1.5E-06 52.1 9.2 44 264-314 165-209 (400)
413 2jeo_A Uridine-cytidine kinase 95.5 0.0075 2.6E-07 53.4 3.5 28 198-225 24-51 (245)
414 1htw_A HI0065; nucleotide-bind 95.5 0.0076 2.6E-07 49.4 3.2 26 198-223 32-57 (158)
415 2va8_A SSO2462, SKI2-type heli 95.5 0.08 2.7E-06 54.7 11.7 23 198-220 45-67 (715)
416 2z0m_A 337AA long hypothetical 95.5 0.085 2.9E-06 48.6 10.8 22 200-221 32-53 (337)
417 1znw_A Guanylate kinase, GMP k 95.5 0.0074 2.5E-07 51.9 3.2 26 198-223 19-44 (207)
418 1hv8_A Putative ATP-dependent 95.5 0.039 1.3E-06 51.6 8.6 23 200-222 45-67 (367)
419 1s96_A Guanylate kinase, GMP k 95.5 0.0092 3.2E-07 51.9 3.8 26 198-223 15-40 (219)
420 3fdi_A Uncharacterized protein 95.5 0.007 2.4E-07 51.9 3.0 26 200-225 7-32 (201)
421 1qzm_A ATP-dependent protease 95.5 0.017 5.9E-07 42.2 4.5 87 334-430 1-89 (94)
422 3lnc_A Guanylate kinase, GMP k 95.4 0.0046 1.6E-07 54.3 1.7 26 198-223 26-52 (231)
423 1rj9_A FTSY, signal recognitio 95.4 0.011 3.8E-07 54.2 4.2 28 198-225 101-128 (304)
424 2og2_A Putative signal recogni 95.4 0.015 5.2E-07 54.4 5.3 28 198-225 156-183 (359)
425 1q57_A DNA primase/helicase; d 95.4 0.032 1.1E-06 55.0 7.9 28 198-225 241-268 (503)
426 1a7j_A Phosphoribulokinase; tr 95.4 0.011 3.7E-07 53.9 4.1 27 199-225 5-31 (290)
427 2j0s_A ATP-dependent RNA helic 95.4 0.05 1.7E-06 51.9 9.0 21 200-220 75-95 (410)
428 4tmk_A Protein (thymidylate ki 95.4 0.014 4.8E-07 50.4 4.5 29 200-228 4-32 (213)
429 1x6v_B Bifunctional 3'-phospho 95.3 0.024 8.1E-07 57.0 6.7 37 198-238 51-87 (630)
430 1cr0_A DNA primase/helicase; R 95.3 0.011 3.8E-07 53.9 4.0 28 198-225 34-61 (296)
431 3fht_A ATP-dependent RNA helic 95.3 0.041 1.4E-06 52.4 8.2 19 199-217 64-82 (412)
432 3v9p_A DTMP kinase, thymidylat 95.3 0.01 3.5E-07 51.8 3.5 28 199-226 25-52 (227)
433 3tqc_A Pantothenate kinase; bi 95.3 0.012 4E-07 54.3 3.9 27 198-224 91-117 (321)
434 3aez_A Pantothenate kinase; tr 95.3 0.011 3.8E-07 54.4 3.8 28 198-225 89-116 (312)
435 2j37_W Signal recognition part 95.3 0.24 8.1E-06 48.6 13.4 30 198-227 100-129 (504)
436 3fho_A ATP-dependent RNA helic 95.3 0.042 1.4E-06 54.3 8.2 20 199-218 158-177 (508)
437 1np6_A Molybdopterin-guanine d 95.3 0.017 5.9E-07 48.1 4.6 29 199-227 6-34 (174)
438 1rif_A DAR protein, DNA helica 95.2 0.049 1.7E-06 49.2 8.0 23 201-223 130-152 (282)
439 2ocp_A DGK, deoxyguanosine kin 95.2 0.0079 2.7E-07 53.1 2.6 26 199-224 2-27 (241)
440 3ld9_A DTMP kinase, thymidylat 95.2 0.014 4.7E-07 50.8 3.8 31 198-228 20-51 (223)
441 3tmk_A Thymidylate kinase; pho 95.1 0.015 5.1E-07 50.3 4.0 27 199-225 5-31 (216)
442 3fmp_B ATP-dependent RNA helic 95.1 0.047 1.6E-06 53.5 8.0 19 198-216 130-148 (479)
443 1wrb_A DJVLGB; RNA helicase, D 95.1 0.15 5E-06 45.1 10.5 19 200-218 61-79 (253)
444 1xti_A Probable ATP-dependent 95.1 0.09 3.1E-06 49.6 9.6 23 199-221 45-67 (391)
445 2ged_A SR-beta, signal recogni 95.0 0.018 6.1E-07 48.5 4.2 24 198-221 47-70 (193)
446 1wb9_A DNA mismatch repair pro 95.0 0.18 6E-06 52.5 12.2 24 200-223 608-631 (800)
447 3tqf_A HPR(Ser) kinase; transf 95.0 0.013 4.4E-07 48.3 3.0 24 198-221 15-38 (181)
448 2p6r_A Afuhel308 helicase; pro 94.9 0.13 4.4E-06 53.1 11.0 21 199-219 40-60 (702)
449 1nrj_B SR-beta, signal recogni 94.9 0.017 5.7E-07 49.9 3.7 25 198-222 11-35 (218)
450 3e70_C DPA, signal recognition 94.9 0.015 5.1E-07 53.9 3.5 28 198-225 128-155 (328)
451 3eiq_A Eukaryotic initiation f 94.9 0.063 2.2E-06 51.2 8.1 21 200-220 78-98 (414)
452 3hdt_A Putative kinase; struct 94.9 0.015 5.1E-07 50.7 3.2 26 200-225 15-40 (223)
453 2xgj_A ATP-dependent RNA helic 94.8 0.23 7.8E-06 53.2 12.8 21 200-220 102-122 (1010)
454 2qm8_A GTPase/ATPase; G protei 94.8 0.064 2.2E-06 49.9 7.6 27 198-224 54-80 (337)
455 1p5z_B DCK, deoxycytidine kina 94.8 0.0048 1.6E-07 55.3 -0.2 26 198-223 23-48 (263)
456 1sq5_A Pantothenate kinase; P- 94.8 0.018 6.2E-07 52.9 3.7 26 199-224 80-105 (308)
457 1fuu_A Yeast initiation factor 94.8 0.052 1.8E-06 51.4 7.0 19 200-218 59-77 (394)
458 2gk6_A Regulator of nonsense t 94.7 0.017 5.8E-07 58.7 3.8 25 200-224 196-220 (624)
459 1g8f_A Sulfate adenylyltransfe 94.7 0.014 4.6E-07 57.4 2.9 27 199-225 395-421 (511)
460 1wp9_A ATP-dependent RNA helic 94.7 0.17 6E-06 48.9 10.9 23 201-223 25-47 (494)
461 3ice_A Transcription terminati 94.7 0.082 2.8E-06 49.6 7.8 64 196-270 171-234 (422)
462 2ewv_A Twitching motility prot 94.7 0.017 5.9E-07 54.5 3.4 28 198-225 135-162 (372)
463 3l9o_A ATP-dependent RNA helic 94.6 0.25 8.6E-06 53.5 12.6 25 199-223 199-223 (1108)
464 3kta_A Chromosome segregation 94.6 0.02 6.9E-07 47.9 3.3 24 201-224 28-51 (182)
465 2f1r_A Molybdopterin-guanine d 94.5 0.012 4.1E-07 48.9 1.7 27 200-226 3-29 (171)
466 1pzn_A RAD51, DNA repair and r 94.5 0.017 5.9E-07 54.1 2.9 26 198-223 130-155 (349)
467 3b85_A Phosphate starvation-in 94.5 0.016 5.5E-07 49.9 2.4 23 200-222 23-45 (208)
468 2oca_A DAR protein, ATP-depend 94.5 0.13 4.3E-06 50.8 9.3 24 200-223 129-152 (510)
469 1m8p_A Sulfate adenylyltransfe 94.5 0.022 7.5E-07 57.0 3.7 29 198-226 395-423 (573)
470 2db3_A ATP-dependent RNA helic 94.4 0.33 1.1E-05 46.7 12.0 47 264-317 205-254 (434)
471 2dyk_A GTP-binding protein; GT 94.4 0.02 6.9E-07 46.4 2.8 22 200-221 2-23 (161)
472 1oix_A RAS-related protein RAB 94.4 0.022 7.6E-07 48.1 3.1 23 200-222 30-52 (191)
473 3tif_A Uncharacterized ABC tra 94.4 0.021 7.1E-07 50.2 3.0 24 198-221 30-53 (235)
474 2cbz_A Multidrug resistance-as 94.4 0.021 7.2E-07 50.3 3.0 26 198-223 30-55 (237)
475 3ihw_A Centg3; RAS, centaurin, 94.4 0.026 9E-07 47.3 3.5 23 199-221 20-42 (184)
476 3oiy_A Reverse gyrase helicase 94.4 0.17 5.9E-06 48.3 9.7 22 200-221 37-58 (414)
477 2wsm_A Hydrogenase expression/ 94.3 0.044 1.5E-06 47.3 5.0 26 199-224 30-55 (221)
478 2pcj_A ABC transporter, lipopr 94.3 0.02 7E-07 49.9 2.8 24 198-221 29-52 (224)
479 2onk_A Molybdate/tungstate ABC 94.3 0.025 8.6E-07 49.8 3.4 24 200-223 25-48 (240)
480 3cr8_A Sulfate adenylyltranfer 94.3 0.016 5.4E-07 57.6 2.3 28 198-225 368-395 (552)
481 2f9l_A RAB11B, member RAS onco 94.3 0.025 8.4E-07 48.1 3.2 23 200-222 6-28 (199)
482 4a4z_A Antiviral helicase SKI2 94.2 0.18 6.1E-06 54.0 10.3 24 200-223 55-78 (997)
483 2o8b_B DNA mismatch repair pro 94.2 0.29 9.9E-06 52.4 11.8 22 200-221 790-811 (1022)
484 1c9k_A COBU, adenosylcobinamid 94.2 0.025 8.6E-07 47.2 2.9 21 202-222 2-22 (180)
485 3sop_A Neuronal-specific septi 94.2 0.027 9.1E-07 50.6 3.3 23 201-223 4-26 (270)
486 1sgw_A Putative ABC transporte 94.1 0.026 8.7E-07 48.8 3.0 24 198-221 34-57 (214)
487 2gks_A Bifunctional SAT/APS ki 94.1 0.036 1.2E-06 55.1 4.4 29 199-227 372-400 (546)
488 1gm5_A RECG; helicase, replica 94.1 0.18 6.1E-06 52.3 9.7 24 198-221 388-411 (780)
489 2wjy_A Regulator of nonsense t 94.1 0.028 9.6E-07 58.6 3.7 25 200-224 372-396 (800)
490 1b0u_A Histidine permease; ABC 94.1 0.026 9E-07 50.4 3.0 24 198-221 31-54 (262)
491 1ewq_A DNA mismatch repair pro 94.1 0.25 8.6E-06 51.1 10.7 24 200-223 577-600 (765)
492 2lkc_A Translation initiation 94.0 0.035 1.2E-06 45.9 3.6 24 198-221 7-30 (178)
493 3hjn_A DTMP kinase, thymidylat 94.0 0.068 2.3E-06 45.4 5.4 27 202-228 3-29 (197)
494 3dmq_A RNA polymerase-associat 94.0 0.097 3.3E-06 56.0 7.8 46 199-246 170-215 (968)
495 2zej_A Dardarin, leucine-rich 94.0 0.025 8.4E-07 47.4 2.6 22 200-221 3-24 (184)
496 2wji_A Ferrous iron transport 94.0 0.029 9.8E-07 46.0 3.0 22 200-221 4-25 (165)
497 2zu0_C Probable ATP-dependent 94.0 0.034 1.2E-06 49.9 3.6 25 198-222 45-69 (267)
498 1z2a_A RAS-related protein RAB 94.0 0.031 1.1E-06 45.6 3.1 23 199-221 5-27 (168)
499 2olj_A Amino acid ABC transpor 93.9 0.029 1E-06 50.1 3.0 25 198-222 49-73 (263)
500 2hf9_A Probable hydrogenase ni 93.9 0.068 2.3E-06 46.2 5.4 27 198-224 37-63 (226)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.6e-40 Score=311.09 Aligned_cols=236 Identities=19% Similarity=0.284 Sum_probs=199.5
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706 158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 237 (438)
Q Consensus 158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 237 (438)
...|++++|++.+|++|++. +.+|.++++.+...+..+|+++|||||||||||++|+++|++++. +|+.+
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~---v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~-------~f~~v 213 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEV---IELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC-------KFIRV 213 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHH---THHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC-------EEEEE
T ss_pred CCCHHHhCCHHHHHHHHHHH---HHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC-------CceEE
Confidence 45799999999999999988 666777777777777889999999999999999999999999987 99999
Q ss_pred ecccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCC---chhHHHHHHHHHhhccC----CCEEEEEe
Q 013706 238 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFA 307 (438)
Q Consensus 238 ~~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~~~~----~~v~vi~~ 307 (438)
+++++.++|+|++++.++.+|..| .+|||||||+|+++++|..++ +....+++++||..||+ ..|+||+|
T Consensus 214 ~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaA 293 (405)
T 4b4t_J 214 SGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMA 293 (405)
T ss_dssp EGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEE
T ss_pred EhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEec
Confidence 999999999999999999999887 469999999999999876433 33566889999999986 56888888
Q ss_pred cCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706 308 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 385 (438)
Q Consensus 308 ~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (438)
||..... ||||+| ||+.+|+|+.|+.++|.+|++.++++. .+..+++.+.++..+.
T Consensus 294 TNrpd~L-----DpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~---------~l~~dvdl~~lA~~t~-------- 351 (405)
T 4b4t_J 294 TNRLDIL-----DPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKM---------NLTRGINLRKVAEKMN-------- 351 (405)
T ss_dssp ESCSSSS-----CHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS---------BCCSSCCHHHHHHHCC--------
T ss_pred cCChhhC-----CHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCC---------CCCccCCHHHHHHHCC--------
Confidence 8765553 999998 999999999999999999999998764 3445666666655554
Q ss_pred ccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706 386 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 386 ~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 435 (438)
..+|+++.+++..|...+..+ +...|+.+||..|++++.+
T Consensus 352 -G~SGADi~~l~~eA~~~Air~---------~~~~vt~~Df~~Al~~v~~ 391 (405)
T 4b4t_J 352 -GCSGADVKGVCTEAGMYALRE---------RRIHVTQEDFELAVGKVMN 391 (405)
T ss_dssp -SCCHHHHHHHHHHHHHHHHHT---------TCSBCCHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHHc---------CCCCcCHHHHHHHHHHHhC
Confidence 455888899999888776433 3356999999999999876
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-39 Score=305.36 Aligned_cols=236 Identities=20% Similarity=0.304 Sum_probs=197.7
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706 158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 237 (438)
Q Consensus 158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 237 (438)
...|++++|++.+|++|++. +..+..+++.+...+..+|+++|||||||||||++|+++|.+++. +|+.+
T Consensus 178 ~v~~~DIgGld~~k~~L~e~---v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~-------~fi~v 247 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKES---VELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA-------TFLRI 247 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHH---HHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC-------EEEEE
T ss_pred CCcceecCcHHHHHHHHHHH---HHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCC-------CEEEE
Confidence 46899999999999999988 455566666666677788999999999999999999999999987 99999
Q ss_pred ecccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCC---chhHHHHHHHHHhhccC----CCEEEEEe
Q 013706 238 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFA 307 (438)
Q Consensus 238 ~~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~~~~----~~v~vi~~ 307 (438)
+++++.++|+|++++.++.+|..| .+|||||||+|++.++|...+ +....+++++||..||+ +.++||+|
T Consensus 248 ~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaA 327 (437)
T 4b4t_I 248 VGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMA 327 (437)
T ss_dssp ESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEE
T ss_pred EHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEe
Confidence 999999999999999999999877 469999999999999885432 34566788999999874 56888888
Q ss_pred cCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706 308 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 385 (438)
Q Consensus 308 ~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (438)
||..... ||||+| |||.+|+|+.|+.++|.+|++.++.+. .+..+++.+.++..+.+
T Consensus 328 TNrpd~L-----DpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~---------~l~~dvdl~~LA~~T~G------- 386 (437)
T 4b4t_I 328 TNKIETL-----DPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM---------NLSEDVNLETLVTTKDD------- 386 (437)
T ss_dssp ESCSTTC-----CTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS---------CBCSCCCHHHHHHHCCS-------
T ss_pred CCChhhc-----CHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC---------CCCCcCCHHHHHHhCCC-------
Confidence 8765543 999998 999999999999999999999999864 34566676666665554
Q ss_pred ccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706 386 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 386 ~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 435 (438)
.+|++|.+++..|...+..+ ....|+.+||.+|++++.|
T Consensus 387 --fSGADI~~l~~eA~~~Air~---------~~~~It~eDf~~Al~rv~~ 425 (437)
T 4b4t_I 387 --LSGADIQAMCTEAGLLALRE---------RRMQVTAEDFKQAKERVMK 425 (437)
T ss_dssp --CCHHHHHHHHHHHHHHHHHT---------TCSCBCHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHHc---------CCCccCHHHHHHHHHHHhC
Confidence 45888899999888777433 2356999999999999876
No 3
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-38 Score=301.60 Aligned_cols=236 Identities=20% Similarity=0.260 Sum_probs=196.8
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706 158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 237 (438)
Q Consensus 158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 237 (438)
...|++++|++.+|++|++. +..+..+++.+..++..+|+++|||||||||||++|+++|++++. +|+.+
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~---V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~-------~fi~v 274 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREV---VELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA-------TFIRV 274 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHH---THHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC-------EEEEE
T ss_pred CCCHHHhccHHHHHHHHHHH---HHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC-------CeEEE
Confidence 35799999999999999987 555666666666677789999999999999999999999999987 99999
Q ss_pred ecccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCC---chhHHHHHHHHHhhccC----CCEEEEEe
Q 013706 238 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFA 307 (438)
Q Consensus 238 ~~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~~~~----~~v~vi~~ 307 (438)
+++++.++|+|++++.++.+|..| .+|||||||+|.++++|..+. ......+++.||..||+ +.|+||+|
T Consensus 275 s~s~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaA 354 (467)
T 4b4t_H 275 IGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFA 354 (467)
T ss_dssp EGGGGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEE
T ss_pred EhHHhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeC
Confidence 999999999999999999999887 469999999999999886443 23456788899999975 56888888
Q ss_pred cCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706 308 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 385 (438)
Q Consensus 308 ~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (438)
||..... ||||+| ||+.+|+|+.|+.++|.+||+.++++. .+..+++.+.++..+.+
T Consensus 355 TNrpd~L-----DpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~---------~l~~dvdl~~LA~~T~G------- 413 (467)
T 4b4t_H 355 TNRPNTL-----DPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSM---------SVERGIRWELISRLCPN------- 413 (467)
T ss_dssp CSCTTSB-----CHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTS---------CBCSSCCHHHHHHHCCS-------
T ss_pred CCCcccC-----ChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCC---------CCCCCCCHHHHHHHCCC-------
Confidence 7765543 999998 999999999999999999999999864 34456676666665554
Q ss_pred ccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706 386 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 386 ~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 435 (438)
.+|++|.+++..|...+..+ +...|+.+||.+|++++.+
T Consensus 414 --fSGADI~~l~~eAa~~Air~---------~~~~it~~Df~~Al~kV~~ 452 (467)
T 4b4t_H 414 --STGAELRSVCTEAGMFAIRA---------RRKVATEKDFLKAVDKVIS 452 (467)
T ss_dssp --CCHHHHHHHHHHHHHHHHHH---------TCSSBCHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHHHHHHc---------CCCccCHHHHHHHHHHHhc
Confidence 45788899999888776433 2356999999999998864
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-38 Score=302.47 Aligned_cols=237 Identities=21% Similarity=0.270 Sum_probs=197.4
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706 158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 237 (438)
Q Consensus 158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 237 (438)
...|++++|++.+++.|++. +.+|..+++.+...+..+|+++|||||||||||++|+++|++++. +|+.+
T Consensus 177 ~v~~~digGl~~~k~~l~e~---v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~-------~~~~v 246 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREV---IELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA-------NFIFS 246 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHH---HHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC-------EEEEE
T ss_pred CCChhHhCChHHHHHHHHHH---HHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-------CEEEE
Confidence 45799999999999999988 555667777777677789999999999999999999999999987 99999
Q ss_pred ecccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCC---chhHHHHHHHHHhhccC----CCEEEEEe
Q 013706 238 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFA 307 (438)
Q Consensus 238 ~~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~~~~----~~v~vi~~ 307 (438)
+++++.++|+|++++.++.+|..| .+|||||||+|.++++|.+++ +.....+++.||..||+ +.++||+|
T Consensus 247 ~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~A 326 (437)
T 4b4t_L 247 PASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMA 326 (437)
T ss_dssp EGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEE
T ss_pred ehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEe
Confidence 999999999999999999999887 469999999999999875432 34556788999999986 46888888
Q ss_pred cCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706 308 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 385 (438)
Q Consensus 308 ~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (438)
||..... ||||+| ||+.+|+||.|+.++|.+|++.++.+. .+..+++.+.++..+.
T Consensus 327 TNrp~~L-----DpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~---------~~~~d~dl~~lA~~t~-------- 384 (437)
T 4b4t_L 327 TNRPDTL-----DPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKV---------KKTGEFDFEAAVKMSD-------- 384 (437)
T ss_dssp ESSTTSS-----CTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTS---------CBCSCCCHHHHHHTCC--------
T ss_pred cCCchhh-----CHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCC---------CCCcccCHHHHHHhCC--------
Confidence 7765543 999987 699999999999999999999999865 3345566666655544
Q ss_pred ccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHhc
Q 013706 386 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL 436 (438)
Q Consensus 386 ~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~~ 436 (438)
..+|++|.+++..|...+..+ +...|+.+||.+|++++.|.
T Consensus 385 -G~sGADi~~l~~eA~~~air~---------~~~~i~~~d~~~Al~~v~~~ 425 (437)
T 4b4t_L 385 -GFNGADIRNCATEAGFFAIRD---------DRDHINPDDLMKAVRKVAEV 425 (437)
T ss_dssp -SCCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHHHHHHHT
T ss_pred -CCCHHHHHHHHHHHHHHHHHc---------CCCCCCHHHHHHHHHHHHhc
Confidence 455888999999888776433 23469999999999999874
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-38 Score=304.57 Aligned_cols=237 Identities=21% Similarity=0.269 Sum_probs=198.0
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706 158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 237 (438)
Q Consensus 158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 237 (438)
...|++++|++.+|+.|++. +..|..+++.+...+..+|+++|||||||||||++|+++|.+++. +|+.+
T Consensus 177 ~~t~~digGl~~~k~~l~e~---v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~-------~f~~v 246 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEA---IVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA-------TFLKL 246 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHH---THHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC-------EEEEE
T ss_pred CCChHhcCcHHHHHHHHHHH---HHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC-------CEEEE
Confidence 45799999999999999987 566677777777777788999999999999999999999999987 99999
Q ss_pred ecccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCC---chhHHHHHHHHHhhccC----CCEEEEEe
Q 013706 238 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFA 307 (438)
Q Consensus 238 ~~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~~~~----~~v~vi~~ 307 (438)
+++++.++|+|++++.++.+|..| .+|||||||+|.++++|.... ......+++.||..||+ ..|+||+|
T Consensus 247 ~~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaa 326 (434)
T 4b4t_M 247 AAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAA 326 (434)
T ss_dssp EGGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEE
T ss_pred ehhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEe
Confidence 999999999999999999999877 579999999999999886433 23456788999999986 46888888
Q ss_pred cCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706 308 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 385 (438)
Q Consensus 308 ~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (438)
||..... ||||+| ||+.+|+|+.|+.++|.+|++.++++. .+..+++.+.++..+.
T Consensus 327 TNrp~~L-----D~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~---------~~~~dvdl~~lA~~t~-------- 384 (434)
T 4b4t_M 327 TNRVDVL-----DPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKM---------TTDDDINWQELARSTD-------- 384 (434)
T ss_dssp CSSCCCC-----CTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHS---------CBCSCCCHHHHHHHCS--------
T ss_pred CCCchhc-----CHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCC---------CCCCcCCHHHHHHhCC--------
Confidence 7765543 999988 999999999999999999999999864 3445666666665554
Q ss_pred ccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHhc
Q 013706 386 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLRL 436 (438)
Q Consensus 386 ~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~~ 436 (438)
..+|++|.+++..|...+..+ +...|+.+||.+|+++++|.
T Consensus 385 -G~sGADi~~l~~eA~~~a~r~---------~~~~i~~~Df~~Al~~v~~~ 425 (434)
T 4b4t_M 385 -EFNGAQLKAVTVEAGMIALRN---------GQSSVKHEDFVEGISEVQAR 425 (434)
T ss_dssp -SCCHHHHHHHHHHHHHHHHHH---------TCSSBCHHHHHHHHHSCSSS
T ss_pred -CCCHHHHHHHHHHHHHHHHHc---------CCCCcCHHHHHHHHHHHhCC
Confidence 445888999999888776433 33579999999999988763
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-37 Score=294.61 Aligned_cols=235 Identities=20% Similarity=0.279 Sum_probs=194.5
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706 158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 237 (438)
Q Consensus 158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 237 (438)
...|++++|++.+|+.|++. +..+..+++.+...+..+|+++|||||||||||++|+++|++++. +|+.+
T Consensus 168 ~v~~~digGl~~~k~~l~e~---v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~-------~~~~v 237 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREA---VELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA-------AFIRV 237 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHH---HHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTC-------EEEEE
T ss_pred CCCHHHhccHHHHHHHHHHH---HHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CeEEE
Confidence 35799999999999999987 445556666666667788999999999999999999999999987 99999
Q ss_pred ecccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCC---CchhHHHHHHHHHhhccC----CCEEEEEe
Q 013706 238 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFA 307 (438)
Q Consensus 238 ~~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~v~vi~~ 307 (438)
+++++.++|+|++++.++.+|..| .+|||||||+|++++.|... ++....+++++||..||+ ..++||+|
T Consensus 238 ~~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~a 317 (428)
T 4b4t_K 238 NGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMA 317 (428)
T ss_dssp EGGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEE
T ss_pred ecchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEe
Confidence 999999999999999999999887 46999999999999987533 344567899999999985 56888888
Q ss_pred cCChhHHHHhhhCcCccC--CCCcceeCC-CCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhh
Q 013706 308 GYSEPMKRVIASNEGFCR--RVTKFFHFN-DFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ 384 (438)
Q Consensus 308 ~~~~~~~~~~~~~p~l~~--R~~~~i~~~-~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (438)
||..... ||||+| ||+..|+|| .|+.++|..|++.++.+. .+..+++.+.++..+.+
T Consensus 318 TN~~~~L-----D~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~---------~l~~~~dl~~lA~~t~G------ 377 (428)
T 4b4t_K 318 TNRADTL-----DPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKM---------SLAPEADLDSLIIRNDS------ 377 (428)
T ss_dssp ESCSSSC-----CHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSS---------CBCTTCCHHHHHHHTTT------
T ss_pred cCChhhc-----ChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCC---------CCCcccCHHHHHHHCCC------
Confidence 7765543 999988 999999997 799999999999999864 34456666666655554
Q ss_pred hccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706 385 RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 434 (438)
Q Consensus 385 ~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~ 434 (438)
.+|+++.+++..|...+..+ +...|+.+||.+|++...
T Consensus 378 ---~sgadi~~l~~eA~~~a~r~---------~~~~i~~~d~~~A~~~~~ 415 (428)
T 4b4t_K 378 ---LSGAVIAAIMQEAGLRAVRK---------NRYVILQSDLEEAYATQV 415 (428)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHHHHHS
T ss_pred ---CCHHHHHHHHHHHHHHHHHC---------CCCCCCHHHHHHHHHHhh
Confidence 45788899999988777543 235699999999998753
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=5.8e-36 Score=307.29 Aligned_cols=244 Identities=17% Similarity=0.253 Sum_probs=167.7
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|++++|++++|+.|++. +.++.++++.+...+..+++++|||||||||||++|+++|.+++. +|+.++
T Consensus 474 v~w~diggl~~~k~~l~e~---v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~-------~f~~v~ 543 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQEL---VQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISIK 543 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTT---TTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC-------EEEECC
T ss_pred CCHHHhCCHHHHHHHHHHH---HHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC-------ceEEec
Confidence 3588999999999999987 566677888888888889999999999999999999999998876 999999
Q ss_pred cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCC---CchhHHHHHHHHHhhccC----CCEEEEEec
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAG 308 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~v~vi~~~ 308 (438)
.++++++|+|++++.++.+|+.|+ +|||||||+|++.+.|+.. ++....+++++||.+||+ ..|+||+||
T Consensus 544 ~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aT 623 (806)
T 3cf2_A 544 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT 623 (806)
T ss_dssp HHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-
T ss_pred cchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeC
Confidence 999999999999999999999884 6999999999999988632 345667899999999986 568888887
Q ss_pred CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhc
Q 013706 309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 386 (438)
Q Consensus 309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (438)
|..... |||++| ||+.+|+|+.|+.++|.+|++.++++. .+..+++.+.++..+.+++
T Consensus 624 N~p~~l-----D~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~---------~~~~~~dl~~la~~t~g~S------ 683 (806)
T 3cf2_A 624 NRPDII-----DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS---------PVAKDVDLEFLAKMTNGFS------ 683 (806)
T ss_dssp CCSSSS-----CHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC-----------CCC--------------------
T ss_pred CCchhC-----CHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCC---------CCCCCCCHHHHHHhCCCCC------
Confidence 765543 999999 999999999999999999999988764 3445667777777777665
Q ss_pred cccccchHHHHHHHHHHhhccccCCC----------------CChhhhhhccHHHHHHHHHHHHh
Q 013706 387 EMNGGLVDPMLVNARENLDLRLSFDC----------------LDTDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 387 ~~n~~~l~~~~~~a~~~~~~r~~~~~----------------~~~~~~~~i~~~d~~~a~~~~~~ 435 (438)
|+++.+++..|...+..+..... ...+....|+.+||.+|++.++|
T Consensus 684 ---Gadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~p 745 (806)
T 3cf2_A 684 ---GADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARR 745 (806)
T ss_dssp -----CHHHHHHHHHHHHHHHHHC-----------------------CCC----CCTTTC-----
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCC
Confidence 77788888888777765532111 11122357999999999999987
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.5e-34 Score=295.25 Aligned_cols=245 Identities=20% Similarity=0.292 Sum_probs=205.1
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|++++|++.++++|++. +..+.++++.+..++..+|+++|||||||||||++||++|++++. +++.++
T Consensus 201 v~~~dIgGl~~~~~~l~e~---v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~-------~~~~v~ 270 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEM---VELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-------FFFLIN 270 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHH---HHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC-------EEEEEE
T ss_pred CChhhhcCHHHHHHHHHHH---HHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-------eEEEEE
Confidence 4699999999999999987 566788899999999999999999999999999999999998876 899999
Q ss_pred cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC----CCEEEEEecCCh
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSE 311 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~v~vi~~~~~~ 311 (438)
++++.++|+|++++.++.+|+.|+ ++||||||+|.+++++++.+++...+++++|+..|++ +.|+||++|+..
T Consensus 271 ~~~l~sk~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~ 350 (806)
T 3cf2_A 271 GPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (806)
T ss_dssp HHHHHSSCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSST
T ss_pred hHHhhcccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCCh
Confidence 999999999999999999999985 5999999999999999877778888999999999975 568888887765
Q ss_pred hHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhcccc
Q 013706 312 PMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN 389 (438)
Q Consensus 312 ~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 389 (438)
... ||+|+| ||+..|+++.|+.++|.+|++.++.+. .+..+++.+.++..+.+ ..
T Consensus 351 d~L-----D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~---------~~~~dvdl~~lA~~T~G---------fs 407 (806)
T 3cf2_A 351 NSI-----DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM---------KLADDVDLEQVANETHG---------HV 407 (806)
T ss_dssp TTS-----CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSS---------EECTTCCHHHHHHHCCS---------CC
T ss_pred hhc-----CHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCC---------CCCcccCHHHHHHhcCC---------CC
Confidence 442 999999 999999999999999999999988764 34456666665555554 45
Q ss_pred ccchHHHHHHHHHHhhcccc------CCCCChh--hhhhccHHHHHHHHHHHHhc
Q 013706 390 GGLVDPMLVNARENLDLRLS------FDCLDTD--ELRTITLEDLEAGLKLLLRL 436 (438)
Q Consensus 390 ~~~l~~~~~~a~~~~~~r~~------~~~~~~~--~~~~i~~~d~~~a~~~~~~~ 436 (438)
+++|.+++.+|...+..|.. ......+ +...|+.+||..|++.++|-
T Consensus 408 gaDL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~~ps 462 (806)
T 3cf2_A 408 GADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS 462 (806)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSSSCC
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhCCCc
Confidence 78888999888877766642 1111222 23568999999999988774
No 9
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.98 E-value=9.3e-32 Score=253.19 Aligned_cols=245 Identities=17% Similarity=0.202 Sum_probs=195.4
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|++++|++.+++.|++. +..+.+++..+... ..++.++|||||||||||++|+++|+++. ..+|+.++
T Consensus 9 ~~~~di~G~~~~k~~l~~~---v~~p~~~~~~~~~~-~~~~~~iLL~GppGtGKT~la~ala~~~~------~~~~~~i~ 78 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEA---VILPIKFPHLFTGK-RTPWRGILLFGPPGTGKSYLAKAVATEAN------NSTFFSIS 78 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHH---HHHHHHCGGGSCTT-CCCCSEEEEESSSSSCHHHHHHHHHHHTT------SCEEEEEE
T ss_pred CCHHHhcCHHHHHHHHHHH---HHHHHhCHHHHhCC-CCCCceEEEECCCCccHHHHHHHHHHHcC------CCcEEEEE
Confidence 4689999999999999987 44566777666532 34678999999999999999999999872 23889999
Q ss_pred cccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-----CCEEEEEecCC
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYS 310 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-----~~v~vi~~~~~ 310 (438)
++++.+.|+|++++.++.+|..+ .++||||||+|.+.++++....+...++++.|+..|++ ..++||++|+.
T Consensus 79 ~~~l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~ 158 (322)
T 1xwi_A 79 SSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 158 (322)
T ss_dssp CCSSCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESC
T ss_pred hHHHHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCC
Confidence 99999999999999999999875 46899999999999988877777788999999999974 56888888765
Q ss_pred hhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccc
Q 013706 311 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 390 (438)
Q Consensus 311 ~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 390 (438)
... .+|++++||+..+.++.|+.+++.+|++.++.+.. ..+++..+..++.... ..++
T Consensus 159 ~~~-----ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~-----------~~l~~~~l~~la~~t~------G~sg 216 (322)
T 1xwi_A 159 PWV-----LDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQ-----------NSLTEADFRELGRKTD------GYSG 216 (322)
T ss_dssp TTT-----SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCC-----------BCCCHHHHHHHHHTCT------TCCH
T ss_pred ccc-----CCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCC-----------CCCCHHHHHHHHHHcC------CCCH
Confidence 533 28999999999999999999999999999987642 2235567777776553 5678
Q ss_pred cchHHHHHHHHHHhhccccCC--------------------------------------CCChhh--hhhccHHHHHHHH
Q 013706 391 GLVDPMLVNARENLDLRLSFD--------------------------------------CLDTDE--LRTITLEDLEAGL 430 (438)
Q Consensus 391 ~~l~~~~~~a~~~~~~r~~~~--------------------------------------~~~~~~--~~~i~~~d~~~a~ 430 (438)
+++.+++..|...+..+.... ....+. ...|+.+||.+|+
T Consensus 217 adl~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al 296 (322)
T 1xwi_A 217 ADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSL 296 (322)
T ss_dssp HHHHHHHHHHHTHHHHHHHHCSEEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHH
Confidence 999999998887766553210 001111 2379999999999
Q ss_pred HHHHh
Q 013706 431 KLLLR 435 (438)
Q Consensus 431 ~~~~~ 435 (438)
+.++|
T Consensus 297 ~~~~p 301 (322)
T 1xwi_A 297 SNTKP 301 (322)
T ss_dssp HTCCC
T ss_pred HhCCC
Confidence 98877
No 10
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.98 E-value=2.7e-31 Score=249.84 Aligned_cols=262 Identities=37% Similarity=0.558 Sum_probs=210.8
Q ss_pred HHHHHHHHh-hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC
Q 013706 154 MDELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD 232 (438)
Q Consensus 154 ~~~~~~~l~-~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~ 232 (438)
..+....++ +++|++.+++++.+++.....+..+...+.... .++.++||+||||||||++|+++|+.+...+.....
T Consensus 22 ~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~-~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~ 100 (309)
T 3syl_A 22 AKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHE-TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKG 100 (309)
T ss_dssp HHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSS-CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSC
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCC-CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCC
Confidence 344555666 799999999999999887776666666665443 456789999999999999999999999888877788
Q ss_pred CEEEeecccccccccccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCC
Q 013706 233 RVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYS 310 (438)
Q Consensus 233 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~ 310 (438)
+++.++++++.+.++|+....+...|+.+.++||||||+|.+.+.++. +.....+++.|+..|++ ..+++|+++++
T Consensus 101 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~--~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~ 178 (309)
T 3syl_A 101 HLVSVTRDDLVGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNE--RDYGQEAIEILLQVMENNRDDLVVILAGYA 178 (309)
T ss_dssp CEEEECGGGTCCSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC-----CCTHHHHHHHHHHHHHCTTTCEEEEEECH
T ss_pred cEEEEcHHHhhhhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCc--ccccHHHHHHHHHHHhcCCCCEEEEEeCCh
Confidence 999999999999999999999999999999999999999999876542 23345788899999986 46888999888
Q ss_pred hhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhh-Hhhhcccc
Q 013706 311 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETT-EKQRREMN 389 (438)
Q Consensus 311 ~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~n 389 (438)
..++.+...+|+|++||+.++.|++|+.+++.+|++.++.+.. ..++++++..+...... .....+||
T Consensus 179 ~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~~gn 247 (309)
T 3syl_A 179 DRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQN-----------YQMTPEAETALRAYIGLRRNQPHFAN 247 (309)
T ss_dssp HHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTT-----------CEECHHHHHHHHHHHHHHTTSSSCCH
T ss_pred HHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHHHHhccCCCCCc
Confidence 7777666679999999999999999999999999999998642 33566777777665210 01123899
Q ss_pred ccchHHHHHHHHHHhhccccC---CCCChhhhhhccHHHHHHH
Q 013706 390 GGLVDPMLVNARENLDLRLSF---DCLDTDELRTITLEDLEAG 429 (438)
Q Consensus 390 ~~~l~~~~~~a~~~~~~r~~~---~~~~~~~~~~i~~~d~~~a 429 (438)
+|.++++++++...+..|+.. +....++..+++.+||..+
T Consensus 248 ~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~~i~~~d~~~~ 290 (309)
T 3syl_A 248 ARSIRNALDRARLRQANRLFTASSGPLDARALSTIAEEDIRAS 290 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---CEEHHHHHEECHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHhhccHHHhccc
Confidence 999999999999998888754 3445677788999998753
No 11
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.97 E-value=1.2e-31 Score=253.13 Aligned_cols=245 Identities=16% Similarity=0.193 Sum_probs=190.3
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|++++|++.+++.+++. +..+..++..+.. ...++.++||+||||||||++|+++|++++. +++.++
T Consensus 15 ~~~~di~G~~~~~~~l~~~---i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~-------~~~~v~ 83 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEA---VILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANS-------TFFSVS 83 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHH---THHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTC-------EEEEEE
T ss_pred CCHHHhcChHHHHHHHHHH---HHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCC-------CEEEEc
Confidence 3689999999999999987 4456666666554 3456789999999999999999999998865 899999
Q ss_pred cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-----CCEEEEEecCC
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYS 310 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-----~~v~vi~~~~~ 310 (438)
++++.+.|+|+++..++.+|..+. ++||||||+|.+.+.++...++...++++.|+..|++ ..++||++|+.
T Consensus 84 ~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~ 163 (322)
T 3eie_A 84 SSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI 163 (322)
T ss_dssp HHHHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESC
T ss_pred hHHHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCC
Confidence 999999999999999999998764 4899999999999987655566667888999988863 56888888765
Q ss_pred hhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccc
Q 013706 311 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 390 (438)
Q Consensus 311 ~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 390 (438)
... .+|++++||+..+.++.|+.+++.+|++.++.+.. ..++++.+..++.... ..++
T Consensus 164 ~~~-----ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~-----------~~~~~~~l~~la~~t~------g~sg 221 (322)
T 3eie_A 164 PWQ-----LDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTP-----------CVLTKEDYRTLGAMTE------GYSG 221 (322)
T ss_dssp GGG-----SCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCC-----------CCCCHHHHHHHHHTTT------TCCH
T ss_pred hhh-----CCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCC-----------CCCCHHHHHHHHHHcC------CCCH
Confidence 443 28999999999999999999999999999987642 2345667777776554 5678
Q ss_pred cchHHHHHHHHHHhhccccCC----C----------------------------C--ChhhhhhccHHHHHHHHHHHHhc
Q 013706 391 GLVDPMLVNARENLDLRLSFD----C----------------------------L--DTDELRTITLEDLEAGLKLLLRL 436 (438)
Q Consensus 391 ~~l~~~~~~a~~~~~~r~~~~----~----------------------------~--~~~~~~~i~~~d~~~a~~~~~~~ 436 (438)
+++.+++..|...+..|.... . . +......|+.+||.+|++.++|.
T Consensus 222 ~di~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps 301 (322)
T 3eie_A 222 SDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPT 301 (322)
T ss_dssp HHHHHHHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCC
Confidence 999999988876665543210 0 0 00112569999999999998873
No 12
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.97 E-value=6.7e-31 Score=250.73 Aligned_cols=245 Identities=16% Similarity=0.211 Sum_probs=188.9
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|++++|++.+++.|.+. +..+..++..+.. ...++.++||+||||||||++|+++|+++.. +++.++
T Consensus 48 ~~~~di~G~~~~~~~l~~~---v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~-------~~~~v~ 116 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEA---VILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANS-------TFFSVS 116 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHH---THHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTC-------EEEEEE
T ss_pred CCHHHhCCHHHHHHHHHHH---HHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCC-------CEEEee
Confidence 4699999999999999987 4455566655544 3456789999999999999999999999865 899999
Q ss_pred cccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-----CCEEEEEecCC
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYS 310 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-----~~v~vi~~~~~ 310 (438)
++++.+.|+|+.+..++.+|..+ .++||||||+|.+.+.+....+....+++++|+..|++ ..++||++|+.
T Consensus 117 ~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~ 196 (355)
T 2qp9_X 117 SSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI 196 (355)
T ss_dssp HHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESC
T ss_pred HHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCC
Confidence 99999999999999999999877 57999999999999887666667778889999999873 56888888766
Q ss_pred hhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccc
Q 013706 311 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 390 (438)
Q Consensus 311 ~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 390 (438)
... .+|++++||+..+.++.|+.+++.+|++.++.... ..+++..+..++.... ..++
T Consensus 197 ~~~-----ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~-----------~~~~~~~l~~la~~t~------G~sg 254 (355)
T 2qp9_X 197 PWQ-----LDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTP-----------SVLTKEDYRTLGAMTE------GYSG 254 (355)
T ss_dssp GGG-----SCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSC-----------BCCCHHHHHHHHHHTT------TCCH
T ss_pred ccc-----CCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCC-----------CCCCHHHHHHHHHHcC------CCCH
Confidence 543 28999999999999999999999999999987642 1235567777776653 5678
Q ss_pred cchHHHHHHHHHHhhccccCCC--------------------------------CChh--hhhhccHHHHHHHHHHHHhc
Q 013706 391 GLVDPMLVNARENLDLRLSFDC--------------------------------LDTD--ELRTITLEDLEAGLKLLLRL 436 (438)
Q Consensus 391 ~~l~~~~~~a~~~~~~r~~~~~--------------------------------~~~~--~~~~i~~~d~~~a~~~~~~~ 436 (438)
+++.+++.+|...+..|..... ...+ ....|+.+||..|++.++|-
T Consensus 255 ~dl~~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps 334 (355)
T 2qp9_X 255 SDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPT 334 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCC
Confidence 9999999999888776532100 0001 12469999999999998873
No 13
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.97 E-value=5.7e-31 Score=245.96 Aligned_cols=244 Identities=17% Similarity=0.266 Sum_probs=184.8
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|++++|++.+++.+++.+.. +..+++.+...+..++.++||+||||||||++|+++|+++.. +++.++
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~---~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~-------~~i~v~ 81 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQY---PVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISIK 81 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHH---HHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-------EEEEEC
T ss_pred CCHHHhCCHHHHHHHHHHHHHH---HhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC-------CEEEEE
Confidence 4689999999999999988553 334444433344567889999999999999999999998754 899999
Q ss_pred cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCC---CchhHHHHHHHHHhhccC----CCEEEEEec
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAG 308 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~v~vi~~~ 308 (438)
++++.++|+|++++.++.+|..+. ++||||||+|.+.+.++.. ......++++.|+..|++ .+++||++|
T Consensus 82 ~~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~at 161 (301)
T 3cf0_A 82 GPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT 161 (301)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEE
T ss_pred hHHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEec
Confidence 999999999999999999998874 5899999999998765432 122334677888888874 568888888
Q ss_pred CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhc
Q 013706 309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 386 (438)
Q Consensus 309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (438)
+..... +|++++ ||+..++|+.|+.+++.+|++.++.+.. +..+++.+.++..+.
T Consensus 162 n~~~~l-----d~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~---------~~~~~~~~~la~~~~--------- 218 (301)
T 3cf0_A 162 NRPDII-----DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP---------VAKDVDLEFLAKMTN--------- 218 (301)
T ss_dssp SCGGGS-----CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC---------BCSSCCHHHHHHTCS---------
T ss_pred CCcccc-----ChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCC---------CCccchHHHHHHHcC---------
Confidence 765432 899988 9999999999999999999999997642 234455555555433
Q ss_pred cccccchHHHHHHHHHHhhccccCCC-------------CC---hhhhhhccHHHHHHHHHHHHh
Q 013706 387 EMNGGLVDPMLVNARENLDLRLSFDC-------------LD---TDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 387 ~~n~~~l~~~~~~a~~~~~~r~~~~~-------------~~---~~~~~~i~~~d~~~a~~~~~~ 435 (438)
..++++|++++++|...+..+..... .+ ......|+.+||.+|++.++|
T Consensus 219 g~sg~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~ 283 (301)
T 3cf0_A 219 GFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARR 283 (301)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCC
Confidence 34467999999999887765532100 00 112357999999999988765
No 14
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.96 E-value=7.3e-30 Score=250.56 Aligned_cols=245 Identities=17% Similarity=0.195 Sum_probs=184.2
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|++++|++.+++.|.+. +..+..++..+.. ...++.++||+||||||||++|+++|+++. ..+|+.++
T Consensus 131 ~~~~di~G~~~~k~~l~~~---v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~------~~~~~~v~ 200 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEA---VILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEAN------NSTFFSIS 200 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHH---HTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCC------SSEEEEEC
T ss_pred CCHHHhcCHHHHHHHHHHH---HHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcC------CCCEEEEe
Confidence 4689999999999999987 4455555555442 134678999999999999999999999871 23899999
Q ss_pred cccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-----CCEEEEEecCC
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYS 310 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-----~~v~vi~~~~~ 310 (438)
++++.+.|+|+++..++.+|..+ .++||||||+|.+.+.++....+...++++.|+..|++ ..++||++|+.
T Consensus 201 ~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~ 280 (444)
T 2zan_A 201 SSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 280 (444)
T ss_dssp CC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESC
T ss_pred HHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCC
Confidence 99999999999999999988765 46999999999999888766677778899999999975 46888888766
Q ss_pred hhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccc
Q 013706 311 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 390 (438)
Q Consensus 311 ~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 390 (438)
... .+|++++||+..+.++.|+.+++.+|++.++.+.. ..+++..+..++.... ..++
T Consensus 281 ~~~-----ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~-----------~~l~~~~l~~la~~t~------G~sg 338 (444)
T 2zan_A 281 PWV-----LDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQ-----------NSLTEADFQELGRKTD------GYSG 338 (444)
T ss_dssp GGG-----SCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC-----------EECCHHHHHHHHHHTT------TCCH
T ss_pred ccc-----cCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCC-----------CCCCHHHHHHHHHHcC------CCCH
Confidence 543 28999999999999999999999999999987642 1235566777776553 5578
Q ss_pred cchHHHHHHHHHHhhccccCC--------------------------------------CCChh--hhhhccHHHHHHHH
Q 013706 391 GLVDPMLVNARENLDLRLSFD--------------------------------------CLDTD--ELRTITLEDLEAGL 430 (438)
Q Consensus 391 ~~l~~~~~~a~~~~~~r~~~~--------------------------------------~~~~~--~~~~i~~~d~~~a~ 430 (438)
+++.+++..|...+..++... ....+ ....|+.+||.+|+
T Consensus 339 adl~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~ 418 (444)
T 2zan_A 339 ADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSL 418 (444)
T ss_dssp HHHHHHHHHHHTHHHHHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHH
Confidence 999999998887766553210 00011 12479999999999
Q ss_pred HHHHh
Q 013706 431 KLLLR 435 (438)
Q Consensus 431 ~~~~~ 435 (438)
+.++|
T Consensus 419 ~~~~p 423 (444)
T 2zan_A 419 SSTKP 423 (444)
T ss_dssp HTCCC
T ss_pred HhCCC
Confidence 98887
No 15
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.96 E-value=2.6e-30 Score=237.41 Aligned_cols=250 Identities=18% Similarity=0.239 Sum_probs=176.3
Q ss_pred HHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEe
Q 013706 158 ENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEV 237 (438)
Q Consensus 158 ~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~ 237 (438)
...|++++|+++++++|++. +..+..++.....++...+++++|+||||||||++++++|.++.. .++.+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~---i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-------~~i~i 75 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMA---ILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-------NFISV 75 (274)
T ss_dssp ------CCHHHHHHHHHHHH---HTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-------EEEEE
T ss_pred CCCHHHhCCHHHHHHHHHHH---HHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-------CEEEE
Confidence 46799999999999999886 344444444444455567788999999999999999999997654 68899
Q ss_pred ecccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC----CEEEEEecCC
Q 013706 238 QRTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG----KVVVIFAGYS 310 (438)
Q Consensus 238 ~~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~----~v~vi~~~~~ 310 (438)
++.++.+.++|+.++.++.+|..+ .++++|+||+|.+.+.+.........+++++++..|+++ .++++++++.
T Consensus 76 ~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~ 155 (274)
T 2x8a_A 76 KGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNR 155 (274)
T ss_dssp ETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESC
T ss_pred EcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCC
Confidence 999999999999999999999876 468999999999987654322222346678899888763 4566666665
Q ss_pred hhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccc
Q 013706 311 EPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM 388 (438)
Q Consensus 311 ~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (438)
.... ||+++| ||+..|+++.|+.++|.+|++.+++... ...+..+++.+.++..+. ....
T Consensus 156 p~~L-----D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~------~~~~~~~~~~~~la~~~~-------~~g~ 217 (274)
T 2x8a_A 156 PDII-----DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGT------KPPLDADVNLEAIAGDLR-------CDCY 217 (274)
T ss_dssp GGGS-----CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTB------TTBBCTTCCHHHHHTCSG-------GGSC
T ss_pred hhhC-----CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhccc------CCCCccccCHHHHHHhhc-------cCCc
Confidence 5543 999998 9999999999999999999999886532 123344555555444322 0145
Q ss_pred cccchHHHHHHHHHHhhccccCCC--CChhhhhhccHHHHHHHHHHHHh
Q 013706 389 NGGLVDPMLVNARENLDLRLSFDC--LDTDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 389 n~~~l~~~~~~a~~~~~~r~~~~~--~~~~~~~~i~~~d~~~a~~~~~~ 435 (438)
.++++.+++++|...+..+..... ....+...|+.+||.+|++.++|
T Consensus 218 sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~p 266 (274)
T 2x8a_A 218 TGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRS 266 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHhcC
Confidence 588889999999887766643211 11223347999999999999877
No 16
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.96 E-value=3.5e-29 Score=246.86 Aligned_cols=244 Identities=19% Similarity=0.268 Sum_probs=191.9
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 239 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 239 (438)
.|++++|.+..++++++.+.. +..++..+...+..++.++||+||||||||++|+++|+.++. +|+.+++
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~---~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~-------~fv~vn~ 271 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVEL---PLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-------FFFLING 271 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHH---HHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS-------EEEEEEH
T ss_pred CHHHcCCHHHHHHHHHHHHHH---HhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC-------CEEEEEc
Confidence 578999999999999987543 334444444445667889999999999999999999997744 8999999
Q ss_pred ccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC----CCEEEEEecCChh
Q 013706 240 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSEP 312 (438)
Q Consensus 240 ~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~v~vi~~~~~~~ 312 (438)
+++.+.++|+.+..++.+|..+. ++||||||||.+.++++....+...++++.|+..|++ .+++||++|+...
T Consensus 272 ~~l~~~~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~ 351 (489)
T 3hu3_A 272 PEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPN 351 (489)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGG
T ss_pred hHhhhhhcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCcc
Confidence 99999999999999999998874 4699999999999988877778888999999999984 5688888877654
Q ss_pred HHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccc
Q 013706 313 MKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 390 (438)
Q Consensus 313 ~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 390 (438)
. .+|++++ ||+..|.|+.|+.+++.+|++.++.... +..+.+.+.+...+. ..++
T Consensus 352 ~-----Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~---------l~~~~~l~~la~~t~---------g~s~ 408 (489)
T 3hu3_A 352 S-----IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK---------LADDVDLEQVANETH---------GHVG 408 (489)
T ss_dssp G-----BCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSC---------BCTTCCHHHHHHTCT---------TCCH
T ss_pred c-----cCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCC---------CcchhhHHHHHHHcc---------CCcH
Confidence 3 2899988 9999999999999999999999887642 223333333333322 4457
Q ss_pred cchHHHHHHHHHHhhccccCC------CCCh--hhhhhccHHHHHHHHHHHHhc
Q 013706 391 GLVDPMLVNARENLDLRLSFD------CLDT--DELRTITLEDLEAGLKLLLRL 436 (438)
Q Consensus 391 ~~l~~~~~~a~~~~~~r~~~~------~~~~--~~~~~i~~~d~~~a~~~~~~~ 436 (438)
+++.+++.+|...+..|.... .... .....|+.+||..|++.++|-
T Consensus 409 ~dL~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps 462 (489)
T 3hu3_A 409 ADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPS 462 (489)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCch
Confidence 889999999988877664321 1111 123469999999999999874
No 17
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.96 E-value=2.5e-28 Score=238.71 Aligned_cols=233 Identities=22% Similarity=0.305 Sum_probs=180.6
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|++++|.+.+++++++++..+..+..... ++...|+++||+||||||||++|+++|.+++. +|+.++
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~----~g~~~p~gvLL~GppGtGKT~Laraia~~~~~-------~f~~is 81 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNR----IGARMPKGILLVGPPGTGKTLLARAVAGEANV-------PFFHIS 81 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCTHHHHT----TTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC-------CEEEEE
T ss_pred CCHHHhCCcHHHHHHHHHHHHHhhChHHHhh----cCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC-------CeeeCC
Confidence 4689999999999999998776544443333 34456789999999999999999999998865 899999
Q ss_pred cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCC---CchhHHHHHHHHHhhccC----CCEEEEEec
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAG 308 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~v~vi~~~ 308 (438)
++++...++|..+..++.+|..+. ++||||||+|.+.++++.. .+....+++++|+..|++ ..++||++|
T Consensus 82 ~~~~~~~~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaT 161 (476)
T 2ce7_A 82 GSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAAT 161 (476)
T ss_dssp GGGTTTCCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEE
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEec
Confidence 999999999999999999998874 5899999999999887632 344556788999999873 568888888
Q ss_pred CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhc
Q 013706 309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 386 (438)
Q Consensus 309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (438)
+..... +|++++ ||+..|.|+.|+.++|.+|++.++.+. .+..+++.+. +.. .|
T Consensus 162 n~~~~L-----d~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~---------~l~~~v~l~~---la~-~t------ 217 (476)
T 2ce7_A 162 NRPDIL-----DPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK---------PLAEDVNLEI---IAK-RT------ 217 (476)
T ss_dssp SCGGGS-----CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS---------CBCTTCCHHH---HHH-TC------
T ss_pred CChhhh-----chhhcccCcceeEeecCCCCHHHHHHHHHHHHHhC---------CCcchhhHHH---HHH-hc------
Confidence 765432 889887 999999999999999999999988764 2334444333 333 33
Q ss_pred ccc-ccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706 387 EMN-GGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 387 ~~n-~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 435 (438)
+|+ +|+|.+++++|...+..+ +...|+.+||.+|++.+.+
T Consensus 218 ~G~sgadL~~lv~~Aal~A~~~---------~~~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 218 PGFVGADLENLVNEAALLAARE---------GRDKITMKDFEEAIDRVIA 258 (476)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHHHHHC-
T ss_pred CCCcHHHHHHHHHHHHHHHHHc---------CCCeecHHHHHHHHHHHhc
Confidence 454 489999999998776322 2356999999999988753
No 18
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.96 E-value=3.6e-28 Score=232.31 Aligned_cols=244 Identities=17% Similarity=0.253 Sum_probs=186.6
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|++++|++.+++.+.+.+. .+..++..+... ..++.++||+||||||||++|+++|+.+.. +++.++
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~-~~~~~~vLl~GppGtGKT~la~aia~~~~~-------~~~~i~ 149 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVV---WPMLRPDIFTGL-RGPPKGILLFGPPGTGKTLIGKCIASQSGA-------TFFSIS 149 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTH---HHHHCTTTSCGG-GSCCSEEEEESSTTSSHHHHHHHHHHHTTC-------EEEEEE
T ss_pred CCHHHhCChHHHHHHHHHHHH---HHhhChHhHhhc-cCCCceEEEECCCCCCHHHHHHHHHHHcCC-------eEEEEe
Confidence 468999999999999998743 344444444333 246789999999999999999999998754 899999
Q ss_pred cccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC------CCEEEEEecC
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKVVVIFAGY 309 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------~~v~vi~~~~ 309 (438)
++++.+.++|+.+..++.+|..+ .++||||||+|.+.+.++...+....++++.|+..+++ ..++||++|+
T Consensus 150 ~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn 229 (357)
T 3d8b_A 150 ASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATN 229 (357)
T ss_dssp GGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEES
T ss_pred hHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecC
Confidence 99999999999998888888765 46999999999999887665566777888999999874 4688888876
Q ss_pred ChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhcccc
Q 013706 310 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN 389 (438)
Q Consensus 310 ~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 389 (438)
.... .++++++||+..+.++.|+.+++.+|+..++.... ..++++++..+..... ...
T Consensus 230 ~~~~-----l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~-----------~~l~~~~l~~la~~t~------G~s 287 (357)
T 3d8b_A 230 RPQE-----IDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQ-----------CCLSEEEIEQIVQQSD------AFS 287 (357)
T ss_dssp CGGG-----BCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSC-----------BCCCHHHHHHHHHHTT------TCC
T ss_pred Chhh-----CCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcC-----------CCccHHHHHHHHHHcC------CCC
Confidence 6432 28999999999999999999999999999887642 2245677777777653 456
Q ss_pred ccchHHHHHHHHHHhhccccC---CCCChhhhhhccHHHHHHHHHHHHh
Q 013706 390 GGLVDPMLVNARENLDLRLSF---DCLDTDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 390 ~~~l~~~~~~a~~~~~~r~~~---~~~~~~~~~~i~~~d~~~a~~~~~~ 435 (438)
+++++.++..|...+..++.. ......+...|+.+||..|++.++|
T Consensus 288 ~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~p 336 (357)
T 3d8b_A 288 GADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRP 336 (357)
T ss_dssp HHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCC
Confidence 789999999887665544321 1122334568999999999999987
No 19
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.96 E-value=5.4e-28 Score=220.99 Aligned_cols=232 Identities=20% Similarity=0.296 Sum_probs=178.9
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|++++|++.+++++.+.+..+. .+..+...+...+.+++|+||||||||++|+++|+.+.. +++.++
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~-------~~~~i~ 77 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLR----EPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV-------PFFTIS 77 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHH----CGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC-------CEEEEC
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHh----CHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC-------CEEEEe
Confidence 368999999999999998766543 233333444556789999999999999999999998754 789999
Q ss_pred cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCC---CchhHHHHHHHHHhhccC----CCEEEEEec
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAG 308 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~v~vi~~~ 308 (438)
++++...++|+..+.++.+|..+. ++++||||+|.+.+.++.. ..+...+.++.++..+++ ..++||++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~t 157 (257)
T 1lv7_A 78 GSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAAT 157 (257)
T ss_dssp SCSSTTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEE
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEee
Confidence 999999999999999999998874 3799999999999877632 233445778888888874 567888887
Q ss_pred CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhc
Q 013706 309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 386 (438)
Q Consensus 309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (438)
+.... .+|++++ ||+..+.++.|+.+++.+|++.++.+. .+.++.... .+.+.|
T Consensus 158 n~~~~-----l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~---------~l~~~~~~~----~la~~~------ 213 (257)
T 1lv7_A 158 NRPDV-----LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV---------PLAPDIDAA----IIARGT------ 213 (257)
T ss_dssp SCTTT-----SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS---------CBCTTCCHH----HHHHTC------
T ss_pred CCchh-----CCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC---------CCCccccHH----HHHHHc------
Confidence 66532 2889888 999999999999999999999988753 233333322 233344
Q ss_pred cc-cccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706 387 EM-NGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 434 (438)
Q Consensus 387 ~~-n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~ 434 (438)
+| |+|++.+++++|...+..+ +...|+.+||.+|++.+.
T Consensus 214 ~G~~~~dl~~l~~~a~~~a~~~---------~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 214 PGFSGADLANLVNEAALFAARG---------NKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHh---------CCCcccHHHHHHHHHHHh
Confidence 66 9999999999998876432 235799999999999875
No 20
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.95 E-value=1.8e-28 Score=224.84 Aligned_cols=234 Identities=18% Similarity=0.281 Sum_probs=162.9
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 239 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 239 (438)
.|++++|++.+++++++++..+..+ ..+...+...+.++||+||||||||++|+++|+.+.. +++.+++
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~----~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~-------~~~~~~~ 72 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSP----ERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV-------PFLAMAG 72 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCC----C------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC-------CEEEEET
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCH----HHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CEEEech
Confidence 5889999999999999987654332 2333344567889999999999999999999998865 8999999
Q ss_pred ccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCC----chhHHHHHHHHHhhccC----CCEEEEEec
Q 013706 240 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD----KDYGIEALEEIMSVMDG----GKVVVIFAG 308 (438)
Q Consensus 240 ~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~----~~~~~~~~~~ll~~~~~----~~v~vi~~~ 308 (438)
+++...+.|.+...++.+|..+. ++||||||+|.+..++.... +......++.|+..+++ ..+++|+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~t 152 (262)
T 2qz4_A 73 AEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLAST 152 (262)
T ss_dssp TTTSSSSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEE
T ss_pred HHHHhhccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecC
Confidence 99998899988888989998775 79999999999987664321 22334667888887765 467888887
Q ss_pred CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHH-HHHHHHHHHhhHhhh
Q 013706 309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMD-AIAALIEKETTEKQR 385 (438)
Q Consensus 309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 385 (438)
+.... .++++++ ||+..+.|+.|+.+++.+|++.++.+.. ... +.+ .+..+....
T Consensus 153 n~~~~-----ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~-------~~~----~~~~~~~~l~~~~------ 210 (262)
T 2qz4_A 153 NRADI-----LDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK-------LTQ----SSTFYSQRLAELT------ 210 (262)
T ss_dssp SCGGG-----GGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT-------CCB----THHHHHHHHHHTC------
T ss_pred CChhh-----cCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC-------CCc----chhhHHHHHHHHC------
Confidence 65443 2789998 9999999999999999999999998642 121 222 123333322
Q ss_pred ccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706 386 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 386 ~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 435 (438)
...+++++.++++.|...+.. .+...|+.+||.+|++.+.+
T Consensus 211 ~g~~~~~l~~l~~~a~~~a~~---------~~~~~i~~~d~~~a~~~~~~ 251 (262)
T 2qz4_A 211 PGFSGADIANICNEAALHAAR---------EGHTSVHTLNFEYAVERVLA 251 (262)
T ss_dssp TTCCHHHHHHHHHHHHTC-----------------CCBCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH---------cCCCCCCHHHHHHHHHHhcc
Confidence 134568899998888766522 23457999999999998875
No 21
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.95 E-value=7.7e-28 Score=233.04 Aligned_cols=243 Identities=22% Similarity=0.269 Sum_probs=177.5
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 239 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 239 (438)
.|++++|++.+++.+.+++ ..+..++..+.... .++.++||+||||||||++|+++|+.++. +|+.+++
T Consensus 113 ~~~~iiG~~~~~~~l~~~~---~~~~~~~~~~~~~~-~~~~~vLL~GppGtGKT~la~aia~~~~~-------~~~~v~~ 181 (389)
T 3vfd_A 113 KFDDIAGQDLAKQALQEIV---ILPSLRPELFTGLR-APARGLLLFGPPGNGKTMLAKAVAAESNA-------TFFNISA 181 (389)
T ss_dssp CGGGSCSCHHHHHHHHHHT---HHHHHCTTTSCGGG-CCCSEEEEESSTTSCHHHHHHHHHHHTTC-------EEEEECS
T ss_pred ChHHhCCHHHHHHHHHHHH---HHhccCHHHhcccC-CCCceEEEECCCCCCHHHHHHHHHHhhcC-------cEEEeeH
Confidence 5899999999999999874 34444444444333 35789999999999999999999998755 8999999
Q ss_pred ccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC------CCEEEEEecCC
Q 013706 240 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------GKVVVIFAGYS 310 (438)
Q Consensus 240 ~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------~~v~vi~~~~~ 310 (438)
+++.+.|+|+.+..+..+|..+. ++||||||||.+...++........++++.|+..+++ ..++||++|+.
T Consensus 182 ~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~ 261 (389)
T 3vfd_A 182 ASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNR 261 (389)
T ss_dssp CCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESC
T ss_pred HHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCC
Confidence 99999999999999999888764 4999999999999877665566677888899988873 45888888765
Q ss_pred hhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccc
Q 013706 311 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 390 (438)
Q Consensus 311 ~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 390 (438)
... .++++++||+..+.|+.|+.+++.+|++.++.... ..++.+.+..+..... ..++
T Consensus 262 ~~~-----l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~-----------~~l~~~~~~~la~~~~------g~~~ 319 (389)
T 3vfd_A 262 PQE-----LDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQG-----------SPLTQKELAQLARMTD------GYSG 319 (389)
T ss_dssp GGG-----CCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC-----------CCSCHHHHHHHHHHTT------TCCH
T ss_pred chh-----cCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHHHHcC------CCCH
Confidence 432 28999999999999999999999999999887642 2345667777776653 5567
Q ss_pred cchHHHHHHHHHHhhccccCC---CCChhhhhhccHHHHHHHHHHHHh
Q 013706 391 GLVDPMLVNARENLDLRLSFD---CLDTDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 391 ~~l~~~~~~a~~~~~~r~~~~---~~~~~~~~~i~~~d~~~a~~~~~~ 435 (438)
+++..++..|...+..++... .....+...|+.+||..+++.+.|
T Consensus 320 ~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~ 367 (389)
T 3vfd_A 320 SDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKR 367 (389)
T ss_dssp HHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCC
Confidence 889999888877766554321 122234467999999999987654
No 22
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=7.8e-28 Score=223.48 Aligned_cols=235 Identities=21% Similarity=0.301 Sum_probs=179.7
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|++++|++.+++++.+.+.. +...+..+...+...+.++||+||||||||++|+++|+.+.. +++.++
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~-------~~~~v~ 83 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVEL---PLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA-------TFIRVV 83 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHH---HHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC-------EEEEEE
T ss_pred CCHHHhcCHHHHHHHHHHHHHH---HhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-------CEEEEe
Confidence 3689999999999999987543 223333333334457789999999999999999999998755 899999
Q ss_pred cccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCC---chhHHHHHHHHHhhccC----CCEEEEEec
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFAG 308 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~~~~----~~v~vi~~~ 308 (438)
++++.+.+.|+....+...|..+ .++||||||+|.+.+++++.. .......+..++..+++ ..+++|+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~tt 163 (285)
T 3h4m_A 84 GSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGAT 163 (285)
T ss_dssp GGGGCCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEEC
T ss_pred hHHHHHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeC
Confidence 99999999999999888888766 457999999999998776442 33445667777777653 568888887
Q ss_pred CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhc
Q 013706 309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 386 (438)
Q Consensus 309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (438)
+.... .+|++++ ||+..+.|+.|+.+++.+|++.++.... +..+.+.+.+...+.
T Consensus 164 n~~~~-----l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~---------~~~~~~~~~l~~~~~--------- 220 (285)
T 3h4m_A 164 NRPDI-----LDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMN---------LAEDVNLEEIAKMTE--------- 220 (285)
T ss_dssp SCGGG-----BCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSC---------BCTTCCHHHHHHHCT---------
T ss_pred CCchh-----cCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCC---------CCCcCCHHHHHHHcC---------
Confidence 65433 2888888 9999999999999999999999887642 233444444444443
Q ss_pred cccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706 387 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 387 ~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 435 (438)
..+++++++++..|...+..+ ....|+.+||.+|++.+.+
T Consensus 221 g~~~~~i~~l~~~a~~~a~~~---------~~~~I~~~d~~~al~~~~~ 260 (285)
T 3h4m_A 221 GCVGAELKAICTEAGMNAIRE---------LRDYVTMDDFRKAVEKIME 260 (285)
T ss_dssp TCCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHh---------ccCcCCHHHHHHHHHHHHh
Confidence 345788999999998877443 2346999999999998864
No 23
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.95 E-value=4.6e-28 Score=226.41 Aligned_cols=244 Identities=23% Similarity=0.311 Sum_probs=182.3
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|++++|++.+++.+.+.+ ..+..++..+.... .++.++||+||||||||++|+++|+.+.. +++.++
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i---~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~-------~~~~i~ 86 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMV---ILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSA-------TFLNIS 86 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHT---HHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTC-------EEEEEE
T ss_pred CCHHHhCChHHHHHHHHHHH---HhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCC-------CeEEee
Confidence 46899999999999998873 44445555544333 35789999999999999999999998754 899999
Q ss_pred cccccccccccchHHHHHHHHHc---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-------CCEEEEEec
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEA---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-------GKVVVIFAG 308 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-------~~v~vi~~~ 308 (438)
++++.+.+.|+.+..++.+|..+ .++||||||+|.+...++....+....+++.|+..+++ ..++||++|
T Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~t 166 (297)
T 3b9p_A 87 AASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAAT 166 (297)
T ss_dssp STTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEE
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeec
Confidence 99999999999888888887765 46999999999999887654444555677788877764 357788877
Q ss_pred CChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccc
Q 013706 309 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREM 388 (438)
Q Consensus 309 ~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (438)
+.... .+|++++||+..+.++.|+.+++..|++.++.+.. ..++.+.+..+..... ..
T Consensus 167 n~~~~-----l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~-----------~~~~~~~~~~la~~~~------g~ 224 (297)
T 3b9p_A 167 NRPQE-----LDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQG-----------SPLDTEALRRLAKITD------GY 224 (297)
T ss_dssp SCGGG-----BCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGS-----------CCSCHHHHHHHHHHTT------TC
T ss_pred CChhh-----CCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHHHHcC------CC
Confidence 65542 28899999999999999999999999999887642 2345667777776653 55
Q ss_pred cccchHHHHHHHHHHhhccccCC---CCChhhhhhccHHHHHHHHHHHHh
Q 013706 389 NGGLVDPMLVNARENLDLRLSFD---CLDTDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 389 n~~~l~~~~~~a~~~~~~r~~~~---~~~~~~~~~i~~~d~~~a~~~~~~ 435 (438)
.++++.++++.|...+..+.... .....+...|+.+||..|++.++|
T Consensus 225 ~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 274 (297)
T 3b9p_A 225 SGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRR 274 (297)
T ss_dssp CHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCC
Confidence 67899999998877665554211 111223357999999999887665
No 24
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.94 E-value=1e-26 Score=228.65 Aligned_cols=233 Identities=22% Similarity=0.299 Sum_probs=181.2
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|++++|.+.++.+++++...+ ..+..+..++...+++++|+||||||||++|+++|.++.. +++.++
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l----~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~-------~~i~i~ 96 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFL----KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-------PFITAS 96 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHH----HCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-------CEEEEE
T ss_pred CCHHHcCCcHHHHHHHHHHHHHh----hchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CEEEEe
Confidence 46899999999999999986654 2334455566667889999999999999999999998753 899999
Q ss_pred cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCC---CchhHHHHHHHHHhhccC----CCEEEEEec
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDG----GKVVVIFAG 308 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~----~~v~vi~~~ 308 (438)
++++...++|.....++.+|+.+. ++|+||||+|.+...++.. .++...+.+++|+..|++ ..+++++++
T Consensus 97 g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAat 176 (499)
T 2dhr_A 97 GSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT 176 (499)
T ss_dssp GGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECC
T ss_pred hhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEec
Confidence 999999999998889999999885 3899999999998876632 344556788999999985 346677776
Q ss_pred CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhc
Q 013706 309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 386 (438)
Q Consensus 309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (438)
+.... .||++++ ||+..|.|+.|+.++|.+|++.+++.. .+.++++.+ . +.+.|
T Consensus 177 n~p~~-----LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~---------~l~~dv~l~---~-lA~~t------ 232 (499)
T 2dhr_A 177 NRPDI-----LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK---------PLAEDVDLA---L-LAKRT------ 232 (499)
T ss_dssp SCGGG-----SCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS---------CCCCSSTTH---H-HHTTS------
T ss_pred CChhh-----cCcccccccccceEEecCCCCHHHHHHHHHHHHhcC---------CCChHHHHH---H-HHHhc------
Confidence 66544 2999988 999999999999999999999877542 333443332 2 33334
Q ss_pred cccc-cchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706 387 EMNG-GLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 387 ~~n~-~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 435 (438)
+|+. |+|.+++++|...+..+ ....|+.+||.+|++.+.+
T Consensus 233 ~G~~gadL~~lv~~Aa~~A~~~---------~~~~It~~dl~~al~~v~~ 273 (499)
T 2dhr_A 233 PGFVGADLENLLNEAALLAARE---------GRRKITMKDLEEAADRVMM 273 (499)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTT---------CCSSCCSHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHh---------CCCccCHHHHHHHHHHHhc
Confidence 5665 99999999998776322 2246889999999988764
No 25
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.94 E-value=3.6e-26 Score=194.63 Aligned_cols=129 Identities=36% Similarity=0.536 Sum_probs=105.7
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
..|+||||+|+..++.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|+++|.+|.+|+||||+|
T Consensus 35 ~~g~t~l~~a~~~~~~~~~~~ll~----~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A 110 (169)
T 4gpm_A 35 SDGRTPLHHAAENGHKEVVKLLIS----KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHA 110 (169)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHh----cccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHH
Confidence 368888888888888888888888 6788888888888888888888888888888888888888888888888888
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHH
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 139 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~ 139 (438)
+ ..|+.+++++|+++|++++.+|.+|+||| +.|+..++.+++++|++.|++.+
T Consensus 111 ~----~~g~~~~v~~Ll~~gad~~~~d~~G~TpL-~~A~~~g~~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 111 A----ENGHKEVVKLLISKGADVNTSDSDGRTPL-DLAREHGNEEVVKLLEKQGGWLE 163 (169)
T ss_dssp H----HTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHTC-----
T ss_pred H----HcCCHHHHHHHHHcCCCccccCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCcC
Confidence 8 77888888888888888888888888888 55556778888888888887654
No 26
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.93 E-value=5.8e-25 Score=200.50 Aligned_cols=229 Identities=23% Similarity=0.318 Sum_probs=166.9
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|++++|.+.++.+++++...+..+..... .+...+++++|+||||||||+++++++..+.. +++.++
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~----~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~-------~~i~~~ 81 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHE----MGARIPKGVLLVGPPGVGKTHLARAVAGEARV-------PFITAS 81 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHH----TTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC-------CEEEEE
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHCHHHHHH----cCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-------CEEEee
Confidence 4689999999999999988765543333333 23345678999999999999999999997653 788899
Q ss_pred cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCC---CchhHHHHHHHHHhhccCC----CEEEEEec
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDGG----KVVVIFAG 308 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~~----~v~vi~~~ 308 (438)
+.++...+.|+....+..+|+.+. ++++|+||+|.+...++.. ......+.++.++..|+++ .+++++++
T Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t 161 (254)
T 1ixz_A 82 GSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT 161 (254)
T ss_dssp HHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEE
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEcc
Confidence 888888888888888888998875 4899999999998765431 2344567788999888762 34555555
Q ss_pred CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhc
Q 013706 309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 386 (438)
Q Consensus 309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (438)
+.... .||++++ ||+..+.++.|+.+++.+|++.++... .+..+++.. .++..+.
T Consensus 162 ~~p~~-----ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~---------~~~~~~~~~---~la~~~~------ 218 (254)
T 1ixz_A 162 NRPDI-----LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK---------PLAEDVDLA---LLAKRTP------ 218 (254)
T ss_dssp SCGGG-----SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTS---------CBCTTCCHH---HHHHTCT------
T ss_pred CCchh-----CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCC---------CCCcccCHH---HHHHHcC------
Confidence 55443 2899988 999999999999999999999887542 333443333 3333321
Q ss_pred cccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHH
Q 013706 387 EMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL 430 (438)
Q Consensus 387 ~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~ 430 (438)
..++|++++++++|...+..+ ....|+.+||++|+
T Consensus 219 G~~~~dl~~~~~~a~~~a~~~---------~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 219 GFVGADLENLLNEAALLAARE---------GRRKITMKDLEEAA 253 (254)
T ss_dssp TCCHHHHHHHHHHHHHHHHHT---------TCSSBCHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHh---------cCCCcCHHHHHHHh
Confidence 334599999999998776322 22469999999886
No 27
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.92 E-value=7.4e-28 Score=221.55 Aligned_cols=233 Identities=19% Similarity=0.312 Sum_probs=169.1
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 239 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 239 (438)
.|++++|++.+++.+.+++..+..+......+ ...+.++||+||||||||++|+++|+.+.. +++.+++
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~vll~G~~GtGKT~la~~la~~~~~-------~~~~v~~ 77 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLG----AKIPKGVLLVGPPGTGKTLLAKAVAGEAHV-------PFFSMGG 77 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHS----CCCCSCCCCBCSSCSSHHHHHHHHHHHHTC-------CCCCCCS
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCC----CCCCceEEEECCCCCcHHHHHHHHHHHhCC-------CEEEech
Confidence 58899999999999999877666555444433 345678999999999999999999998865 7788888
Q ss_pred ccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCC----chhHHHHHHHHHhhccC-----CCEEEEEe
Q 013706 240 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD----KDYGIEALEEIMSVMDG-----GKVVVIFA 307 (438)
Q Consensus 240 ~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~----~~~~~~~~~~ll~~~~~-----~~v~vi~~ 307 (438)
+++...+.|.....++.+|+.+. ++||||||+|.+.++++.+. +....++++.|+..+++ ..++||++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~t 157 (268)
T 2r62_A 78 SSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAA 157 (268)
T ss_dssp CTTTTSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEEC
T ss_pred HHHHHhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEe
Confidence 89888888888777777777664 49999999999988653211 11122455778888865 34788888
Q ss_pred cCChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhh
Q 013706 308 GYSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQR 385 (438)
Q Consensus 308 ~~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (438)
++.... .+|++++ ||+..+.|+.|+.+++.+|++.++.... +..+.+.+.+...+.
T Consensus 158 tn~~~~-----ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~---------~~~~~~~~~la~~~~-------- 215 (268)
T 2r62_A 158 TNRPEI-----LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVK---------LANDVNLQEVAKLTA-------- 215 (268)
T ss_dssp BSCCTT-----SCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSC---------CCSSCCTTTTTSSSC--------
T ss_pred cCCchh-----cCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCC---------CCCccCHHHHHHHcC--------
Confidence 765543 2888888 9999999999999999999999887542 222333333322221
Q ss_pred ccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706 386 REMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 386 ~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 435 (438)
..+++++++++++|...+..+ +...|+.+|+.+|++.+.|
T Consensus 216 -g~~g~dl~~l~~~a~~~a~~~---------~~~~i~~~~~~~a~~~~~~ 255 (268)
T 2r62_A 216 -GLAGADLANIINEAALLAGRN---------NQKEVRQQHLKEAVERGIA 255 (268)
T ss_dssp -SSCHHHHHHHHHHHHHTTSSS---------CCCSCCHHHHHTSCTTCCC
T ss_pred -CCCHHHHHHHHHHHHHHHHHh---------ccCCcCHHHHHHHHHHHhh
Confidence 345689999999988776221 2346899999988876554
No 28
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.92 E-value=1.7e-24 Score=207.72 Aligned_cols=256 Identities=19% Similarity=0.247 Sum_probs=174.9
Q ss_pred HHHHHHHhh-hcChHHHHHHHHHHHHHhhhHHHHHhcCC--CCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC
Q 013706 155 DELENELSN-IVGLHELKIQLRKWAKGMLLDERRKALGL--KVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT 231 (438)
Q Consensus 155 ~~~~~~l~~-i~G~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~ 231 (438)
..+...+++ ++|++.+++.+...+..... +...+. .....++.++||+||||||||++|+++|+.++.
T Consensus 7 ~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~---~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~------ 77 (363)
T 3hws_A 7 HEIRNHLDDYVIGQEQAKKVLAVAVYNHYK---RLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDV------ 77 (363)
T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHHHHHH---HHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHHHh---hhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCC------
Confidence 344555655 59999999999887643322 222221 112236789999999999999999999998854
Q ss_pred CCEEEeeccccccc-ccccc-hHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCC---chhHHHHHHHHHhhccC
Q 013706 232 DRVTEVQRTDLVGE-FVGHT-GPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG 299 (438)
Q Consensus 232 ~~~~~~~~~~~~~~-~~g~~-~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~~~~ 299 (438)
+|+.++++++... |+|+. ...++..|..+ .++||||||+|++.+.+.+.+ ......+++.|++.|++
T Consensus 78 -~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg 156 (363)
T 3hws_A 78 -PFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEG 156 (363)
T ss_dssp -CEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHC
T ss_pred -CEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcC
Confidence 8999999988754 88886 55667776554 569999999999998765432 22334588999999983
Q ss_pred C-----------------------CEEEEEecCChhHHHHhh--------------------------------------
Q 013706 300 G-----------------------KVVVIFAGYSEPMKRVIA-------------------------------------- 318 (438)
Q Consensus 300 ~-----------------------~v~vi~~~~~~~~~~~~~-------------------------------------- 318 (438)
. ++++|++++...++.++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~ 236 (363)
T 3hws_A 157 TVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIK 236 (363)
T ss_dssp C----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHH
T ss_pred ceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHH
Confidence 1 234445544332222211
Q ss_pred --hCcCccCCCCcceeCCCCCHHHHHHHHHH----HHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccc
Q 013706 319 --SNEGFCRRVTKFFHFNDFNSEELAKILHI----KMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGL 392 (438)
Q Consensus 319 --~~p~l~~R~~~~i~~~~~~~~e~~~il~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 392 (438)
..|+|.+||+.++.|++|+.+++.+|+.. ++.+........ .....++++++..++.+.+ ..++|+|+
T Consensus 237 ~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~--~~~l~~~~~a~~~L~~~~~----~~~~gaR~ 310 (363)
T 3hws_A 237 FGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLE--GVDLEFRDEALDAIAKKAM----ARKTGARG 310 (363)
T ss_dssp HTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTT--TCEEEECHHHHHHHHHHHH----HTTCTTTT
T ss_pred cCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CceEEECHHHHHHHHHhhc----CCccCchH
Confidence 27899999999999999999999999986 443322111111 2334578899999997433 12788999
Q ss_pred hHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHH
Q 013706 393 VDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEA 428 (438)
Q Consensus 393 l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~ 428 (438)
|++++++++..+..++.... ......|+.+++++
T Consensus 311 L~~~ie~~~~~~l~~~~~~~--~~~~~~I~~~~v~~ 344 (363)
T 3hws_A 311 LRSIVEAALLDTMYDLPSME--DVEKVVIDESVIDG 344 (363)
T ss_dssp HHHHHHHHHHHHHHSTTTCC--CSEEEECHHHHTTC
T ss_pred HHHHHHHHHHHHHHhccccc--CCceeEEcHHHHhC
Confidence 99999999999877764321 11234566666654
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.92 E-value=1.1e-27 Score=250.62 Aligned_cols=216 Identities=18% Similarity=0.265 Sum_probs=167.4
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 239 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 239 (438)
.|++++|++.+++.+.+.+ .++..++..+...+..++.++||+||||||||++|+++|.++.. +++.+++
T Consensus 475 ~~~di~gl~~vk~~l~~~v---~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~-------~~i~v~~ 544 (806)
T 1ypw_A 475 TWEDIGGLEDVKRELQELV---QYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISIKG 544 (806)
T ss_dssp SSCSSSCCCCHHHHHHTTT---TSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC-------CCCCCCC
T ss_pred cccccccchhhhhhHHHHH---HhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC-------CEEEEec
Confidence 4788999999999998863 33334455555566667889999999999999999999999865 7888999
Q ss_pred ccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCC---chhHHHHHHHHHhhccC----CCEEEEEecC
Q 013706 240 TDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADD---KDYGIEALEEIMSVMDG----GKVVVIFAGY 309 (438)
Q Consensus 240 ~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~---~~~~~~~~~~ll~~~~~----~~v~vi~~~~ 309 (438)
+++.++|+|+++..++.+|..++ ++||||||+|++.+.+++.. +....+++++||..|++ ..++||+||+
T Consensus 545 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN 624 (806)
T 1ypw_A 545 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATN 624 (806)
T ss_dssp SSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCB
T ss_pred hHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecC
Confidence 99999999999999999998874 48999999999998886543 23567899999999986 4577888876
Q ss_pred ChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhcc
Q 013706 310 SEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 387 (438)
Q Consensus 310 ~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (438)
..... ||++++ ||+..|.|+.|+.+++.+|++.++.+.. +..+++.+.++..+. .
T Consensus 625 ~~~~l-----d~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~---------~~~~~~l~~la~~t~---------g 681 (806)
T 1ypw_A 625 RPDII-----DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP---------VAKDVDLEFLAKMTN---------G 681 (806)
T ss_dssp SCGGG-----SCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-------------CCCCSCSCGGGS---------S
T ss_pred CcccC-----CHHHhCccccCceeecCCCCHHHHHHHHHHHhccCC---------CCcccCHHHHHHhcc---------c
Confidence 54432 999999 9999999999999999999999887642 112222222222222 4
Q ss_pred ccccchHHHHHHHHHHhhccc
Q 013706 388 MNGGLVDPMLVNARENLDLRL 408 (438)
Q Consensus 388 ~n~~~l~~~~~~a~~~~~~r~ 408 (438)
.+++++.+++..|...+..+.
T Consensus 682 ~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 682 FSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp SCCHHHHHHHHHHHHHHHSCC
T ss_pred cCHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888776654
No 30
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.91 E-value=4.5e-24 Score=197.15 Aligned_cols=228 Identities=23% Similarity=0.313 Sum_probs=166.1
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|++++|.+.++.+++++...+..+...... +...+++++|+||||||||+++++++..+.. .++.++
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~----~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~-------~~i~~~ 105 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEM----GARIPKGVLLVGPPGVGKTHLARAVAGEARV-------PFITAS 105 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHT----TCCCCCEEEEECCTTSSHHHHHHHHHHHTTC-------CEEEEE
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHc----CCCCCCeEEEECCCcChHHHHHHHHHHHcCC-------CEEEec
Confidence 46899999999999999887655433333332 3345667999999999999999999997753 788899
Q ss_pred cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCC---CchhHHHHHHHHHhhccCC----CEEEEEec
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKAD---DKDYGIEALEEIMSVMDGG----KVVVIFAG 308 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~---~~~~~~~~~~~ll~~~~~~----~v~vi~~~ 308 (438)
+.++...+.|.....+..+|+.+. ++++|+||+|.+...+... ......+.++.++..++++ .+++++++
T Consensus 106 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t 185 (278)
T 1iy2_A 106 GSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAAT 185 (278)
T ss_dssp HHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEE
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEec
Confidence 888888788887788888888764 4899999999997765421 2344567788888888763 25555555
Q ss_pred CChhHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhc
Q 013706 309 YSEPMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRR 386 (438)
Q Consensus 309 ~~~~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (438)
+.... .||++++ ||+..+.|+.|+.+++.+|++.++... .+..+++.. .+.. .|
T Consensus 186 ~~p~~-----ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~---------~~~~~~~~~---~la~-~~------ 241 (278)
T 1iy2_A 186 NRPDI-----LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK---------PLAEDVDLA---LLAK-RT------ 241 (278)
T ss_dssp SCTTS-----SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS---------CBCTTCCHH---HHHH-TC------
T ss_pred CCchh-----CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC---------CCCcccCHH---HHHH-Hc------
Confidence 54433 2888887 999999999999999999999887542 333333333 2333 33
Q ss_pred ccc-ccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHH
Q 013706 387 EMN-GGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL 430 (438)
Q Consensus 387 ~~n-~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~ 430 (438)
+|+ +|+|++++++|...+..+ +...|+.+||++|+
T Consensus 242 ~G~~~~dl~~l~~~a~~~a~~~---------~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 242 PGFVGADLENLLNEAALLAARE---------GRRKITMKDLEEAA 277 (278)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHT---------TCCSBCHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHh---------CCCCcCHHHHHHHh
Confidence 444 489999999998776322 22469999999886
No 31
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.91 E-value=1.6e-23 Score=196.71 Aligned_cols=259 Identities=17% Similarity=0.256 Sum_probs=174.1
Q ss_pred HHHHHHh-hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCC-CCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCC
Q 013706 156 ELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKV-GARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDR 233 (438)
Q Consensus 156 ~~~~~l~-~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~ 233 (438)
++...++ .++|++.+++.+...+... ..+....... ....+.++||+||||||||++|+++++.+.. +
T Consensus 8 ~l~~~l~~~i~G~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~-------~ 77 (310)
T 1ofh_A 8 EIVSELDQHIIGQADAKRAVAIALRNR---WRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA-------P 77 (310)
T ss_dssp HHHHHHHTTCCSCHHHHHHHHHHHHHH---HHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTC-------C
T ss_pred HHHHHHhhhcCChHHHHHHHHHHHHHH---HhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCC-------C
Confidence 3444554 4899999999988765431 1110000000 0135679999999999999999999998854 8
Q ss_pred EEEeecccccc-cccccc-hHHHHHHHHHc--------cCcEEEEeCcccccCCCCCCCchhH-HHHHHHHHhhccCC--
Q 013706 234 VTEVQRTDLVG-EFVGHT-GPKTRRRIKEA--------EGGILFVDEAYRLIPMQKADDKDYG-IEALEEIMSVMDGG-- 300 (438)
Q Consensus 234 ~~~~~~~~~~~-~~~g~~-~~~~~~~~~~a--------~~~il~iDEid~l~~~~~~~~~~~~-~~~~~~ll~~~~~~-- 300 (438)
++.++++.+.. .++|.. ...++.++..+ .++||||||+|.+.+..+....+.. ..+.+.|++.+++.
T Consensus 78 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 157 (310)
T 1ofh_A 78 FIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTV 157 (310)
T ss_dssp EEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEE
T ss_pred EEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeE
Confidence 89999988766 566653 34556655533 3689999999999987654433333 34578888888864
Q ss_pred ----------CEEEEEecC---ChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHH----HHhccccccccccccc
Q 013706 301 ----------KVVVIFAGY---SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHI----KMNNQTEDSLLYGFKL 363 (438)
Q Consensus 301 ----------~v~vi~~~~---~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~----~l~~~~~~~~~~~~~~ 363 (438)
.+++|++++ .++ .. .+|++++||+..+.|++|+.+++.+|++. ++.+...... ....
T Consensus 158 ~~~~~~~~~~~~~~i~~~~~~~~~~-~~---l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~--~~~~ 231 (310)
T 1ofh_A 158 STKHGMVKTDHILFIASGAFQVARP-SD---LIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMA--TEGV 231 (310)
T ss_dssp EETTEEEECTTCEEEEEECCSSSCG-GG---SCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHH--HTTC
T ss_pred ecccccccCCcEEEEEcCCcccCCc-cc---CCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHH--hcCC
Confidence 577888753 222 22 38999999998899999999999999984 2221110000 0112
Q ss_pred cccccHHHHHHHHHHHhhHh-hhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHH
Q 013706 364 HSSCSMDAIAALIEKETTEK-QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 433 (438)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~-~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~ 433 (438)
...++++++..++...|... ....||+|.+.++++++...+..+.... ......|+.+|+.++++.+
T Consensus 232 ~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~---~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 232 NIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDM---NGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp EEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGC---TTCEEEECHHHHHHHTCSS
T ss_pred eeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccc---cCCEEEEeeHHHHHHHHhh
Confidence 24578899999999887211 1124899999999999987765443311 1223459999999988643
No 32
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.91 E-value=5.3e-23 Score=198.04 Aligned_cols=258 Identities=17% Similarity=0.277 Sum_probs=178.6
Q ss_pred HHHHHHHh-hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCC-CCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC
Q 013706 155 DELENELS-NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGA-RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD 232 (438)
Q Consensus 155 ~~~~~~l~-~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~ 232 (438)
.+....++ .++|++.+|+.+...+ ..+.++...+..... .++.++||+||||||||++|+++|+.++.
T Consensus 7 ~~i~~~Ld~~IvGqe~ak~~l~~av---~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~------- 76 (444)
T 1g41_A 7 REIVSELDQHIIGQADAKRAVAIAL---RNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA------- 76 (444)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHH---HHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH---HHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC-------
Confidence 34555666 6899999999997763 344555555544333 25789999999999999999999998865
Q ss_pred CEEEeecccccc-ccccc-chHHHHHHH----------------------------------------------------
Q 013706 233 RVTEVQRTDLVG-EFVGH-TGPKTRRRI---------------------------------------------------- 258 (438)
Q Consensus 233 ~~~~~~~~~~~~-~~~g~-~~~~~~~~~---------------------------------------------------- 258 (438)
+|+.++++.+.. .|+|+ .+..++.+|
T Consensus 77 ~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~ 156 (444)
T 1g41_A 77 PFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTR 156 (444)
T ss_dssp CEEEEEGGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------
T ss_pred CceeecchhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCH
Confidence 888888888777 48885 344333322
Q ss_pred --------------------------------------------------------------------------------
Q 013706 259 -------------------------------------------------------------------------------- 258 (438)
Q Consensus 259 -------------------------------------------------------------------------------- 258 (438)
T Consensus 157 ~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~ 236 (444)
T 1g41_A 157 QAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLIN 236 (444)
T ss_dssp ---------------------------------------------------------------------CCGGGSCSSCC
T ss_pred HHHHHHHHcCCCcceEEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccC
Confidence
Q ss_pred ---------HHc-cCcEEEEeCcccccCCCCCCCchhHH-HHHHHHHhhccC------------CCEEEEEecC---Chh
Q 013706 259 ---------KEA-EGGILFVDEAYRLIPMQKADDKDYGI-EALEEIMSVMDG------------GKVVVIFAGY---SEP 312 (438)
Q Consensus 259 ---------~~a-~~~il~iDEid~l~~~~~~~~~~~~~-~~~~~ll~~~~~------------~~v~vi~~~~---~~~ 312 (438)
+.| .++|+|+||+|+++.+..+...+.+. .+++.||+.||+ .++++|+++. .++
T Consensus 237 ~~~~~~~ai~~ae~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~ 316 (444)
T 1g41_A 237 PEELKQKAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARP 316 (444)
T ss_dssp HHHHHHHHHHHHHHHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCG
T ss_pred HHHHHHHHHHHhccCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCCh
Confidence 223 45799999999999765433445444 477899999986 3577888871 223
Q ss_pred HHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHH---HHHhccccccccccc-cccccccHHHHHHHHHHHhh-Hhhhcc
Q 013706 313 MKRVIASNEGFCRRVTKFFHFNDFNSEELAKILH---IKMNNQTEDSLLYGF-KLHSSCSMDAIAALIEKETT-EKQRRE 387 (438)
Q Consensus 313 ~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~---~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~ 387 (438)
.+ ..|+|++||+.++.|++|+.+++.+|+. .++-+.... .++. .....++++++..+++.... ..-...
T Consensus 317 ~d----lipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~--~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~ 390 (444)
T 1g41_A 317 SD----LIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKA--LMATEGVNIAFTTDAVKKIAEAAFRVNEKTEN 390 (444)
T ss_dssp GG----SCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHH--HHHTTTCEEEECHHHHHHHHHHHHHHHHHSCC
T ss_pred hh----cchHHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHH--HhcccCceEEECHHHHHHHHHHHHHhccCCcc
Confidence 32 2689999999999999999999999993 222221100 0111 23456789999999986542 111135
Q ss_pred ccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHH
Q 013706 388 MNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 431 (438)
Q Consensus 388 ~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~ 431 (438)
.++|.|+++++++.+..+.++.... .....|+.+++.+.+.
T Consensus 391 ~GaR~L~~~ie~~~~~~~~~~~~~~---~~~~~i~~~~v~~~l~ 431 (444)
T 1g41_A 391 IGARRLHTVMERLMDKISFSASDMN---GQTVNIDAAYVADALG 431 (444)
T ss_dssp CGGGHHHHHHHHHHHHHHHHGGGCT---TCEEEECHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHHHhhccccC---CCeEEEeHHHHHHhcC
Confidence 7789999999999999887775432 2346788888887664
No 33
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.91 E-value=1.5e-24 Score=178.07 Aligned_cols=126 Identities=25% Similarity=0.330 Sum_probs=118.1
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCC-CCcHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANN-GMTPLHL 80 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~ 80 (438)
..|+||||+|+..|+.+++++|++ .+++++.+|..|+||||+|+. |+.+++++|+++|++++.+|.. |+||||+
T Consensus 10 ~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~ 84 (136)
T 1d9s_A 10 GSSDAGLATAAARGQVETVRQLLE----AGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHD 84 (136)
T ss_dssp CCCSCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHH
T ss_pred CCCccHHHHHHHcCCHHHHHHHHH----cCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHH
Confidence 478999999999999999999999 688999999999999999999 9999999999999999999999 9999999
Q ss_pred HhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706 81 SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137 (438)
Q Consensus 81 A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~ 137 (438)
|+ ..++.+++++|+++|++++..|..|+||| +.|...++.+++++|+.+|++
T Consensus 85 A~----~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl-~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 85 AA----REGFLDTLVVLHRAGARLDVCDAWGRLPV-DLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HH----HHTCHHHHHHHHHTCCCCCCCSSSSSCHH-HHHHHHTCHHHHHHHHHHHCC
T ss_pred HH----HcCCHHHHHHHHHcCCCCCccCCCCCCHH-HHHHHcCCHHHHHHHHHcCCC
Confidence 99 88999999999999999999999999999 666667889999999987753
No 34
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.90 E-value=6.6e-24 Score=212.25 Aligned_cols=128 Identities=20% Similarity=0.206 Sum_probs=115.5
Q ss_pred CcHHHHHHHcCCHHHHHHHhcCCCCCCcccccc------cCCCChHHHHHHH---cCCHHHHHHHHHCCCCcccccCCCC
Q 013706 5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ------NMYGETPLHMAAK---NGCNEAAKLLLAHGAFIEAKANNGM 75 (438)
Q Consensus 5 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~------d~~g~t~L~~A~~---~g~~~~v~~Ll~~g~~~~~~~~~g~ 75 (438)
.+.||.|+..|+.++|+.|++ .|+++|.. |..|+||||+||. .|+.+++++|+++|+++|.+|..|+
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~----~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~ 208 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFA----NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN 208 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH----TTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSC
T ss_pred HHHHHHHHhccCHHHHHHHHh----hcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCC
Confidence 467999999999999999999 68888877 8899999999977 8999999999999999999999999
Q ss_pred cHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706 76 TPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 141 (438)
Q Consensus 76 t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~ 141 (438)
||||+|+ ..|+.+++++|+++|++++.+|.+|+||| +.|+..++.+++++|+..+++....
T Consensus 209 TpLh~A~----~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl-~~A~~~~~~~~~~~Ll~~ga~~~~~ 269 (497)
T 3lvq_E 209 TALHYAA----LYNQPDCLKLLLKGRALVGTVNEAGETAL-DIARKKHHKECEELLEQAQAGTFAF 269 (497)
T ss_dssp CHHHHHT----TTTCHHHHHHHHHTCCCCSCCCTTCCCHH-HHHHHTTCHHHHHHHHHTCC-----
T ss_pred cHHHHHH----HcCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHcCCHHHHHHHHHhCCCCCCC
Confidence 9999999 88999999999999999999999999999 6666788999999999999887664
No 35
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.90 E-value=1.2e-23 Score=178.95 Aligned_cols=127 Identities=35% Similarity=0.538 Sum_probs=119.2
Q ss_pred cHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcc
Q 013706 6 TPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYS 85 (438)
Q Consensus 6 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 85 (438)
++|+.||..|+.++|+.|++ .|+++|.+|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~----~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~--- 78 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIE----NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAA--- 78 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH---
T ss_pred HHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHH---
Confidence 58999999999999999999 78999999999999999999999999999999999999999999999999999
Q ss_pred cccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706 86 IRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 141 (438)
Q Consensus 86 ~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~ 141 (438)
..|+.+++++|+++|++++.+|.+|+||| |.|+..++.+++++|+..+++...+
T Consensus 79 -~~g~~~~v~~Ll~~gadvn~~d~~G~TpL-h~A~~~g~~~~v~~Ll~~gad~~~~ 132 (169)
T 4gpm_A 79 -ENGHKEVVKLLISKGADVNAKDSDGRTPL-HHAAENGHKEVVKLLISKGADVNTS 132 (169)
T ss_dssp -HTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred -HcCCHHHHHHHHHCcCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCcccc
Confidence 88999999999999999999999999999 6666678999999999988775543
No 36
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.90 E-value=7.7e-24 Score=173.77 Aligned_cols=124 Identities=31% Similarity=0.430 Sum_probs=116.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
.|.||||+||..|+.+++++|++ .+++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 13 ~~~t~l~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~ 88 (136)
T 2jab_A 13 DLGKKLLEAARAGQDDEVRILMA----NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA 88 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred cccHHHHHHHHhCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence 57899999999999999999999 68899999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhcc
Q 013706 83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS 135 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~ 135 (438)
..++.+++++|+++|++++..|.+|+||+ +.|+..++.+++++|+..|
T Consensus 89 ----~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl-~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 89 ----FIGHLEIAEVLLKHGADVNAQDKFGKTAF-DISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp ----HHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHC-
T ss_pred ----HcCCHHHHHHHHHcCCCCcCcCCCCCCHH-HHHHHCCCHHHHHHHHHcC
Confidence 88999999999999999999999999999 6666678889999998654
No 37
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.90 E-value=4e-23 Score=175.32 Aligned_cols=124 Identities=35% Similarity=0.565 Sum_probs=104.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
.|+||||+||..|+.+++++|++ .+++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 41 ~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 116 (165)
T 3twr_A 41 RQSTPLHFAAGYNRVSVVEYLLQ----HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA 116 (165)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred CCCCHHHHHHHcChHHHHHHHHh----cCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHH
Confidence 57789999999899999998888 67888888888889999999988899999999988888888888889999888
Q ss_pred hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccc
Q 013706 83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSE 136 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~ 136 (438)
..++.+++++|+++|++++.+|..|+||+ +++.. ++.+++++|+..++
T Consensus 117 ----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l-~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 117 ----AKGKYEICKLLLQHGADPTKKNRDGNTPL-DLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp ----HTTCHHHHHHHHHTTCCTTCCCTTSCCTG-GGSCT-TCHHHHHHHHTC--
T ss_pred ----HcCCHHHHHHHHHcCCCCcccCCCCCChh-HhHhc-CChHHHHHHhhccc
Confidence 77888888888888888888888899998 44554 66788888887654
No 38
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.90 E-value=3.6e-23 Score=192.08 Aligned_cols=163 Identities=15% Similarity=0.206 Sum_probs=120.0
Q ss_pred CCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHc-------cCcEEE
Q 013706 195 GARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILF 267 (438)
Q Consensus 195 ~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~ 267 (438)
+...|.++||+||||||||++|+++|+.++. +++.++++++.++|+|+++..++..|+.+ .++|||
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~-------~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~ 104 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGI-------NPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLF 104 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTC-------CCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEE
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCC-------CEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 3456789999999999999999999999965 89999999999999999999999999888 679999
Q ss_pred EeCcccccCCCCCCC--chhHHHHHHHHHhhccC---------------CCEEEEEecCChhHHHHhhhCcCccC--CCC
Q 013706 268 VDEAYRLIPMQKADD--KDYGIEALEEIMSVMDG---------------GKVVVIFAGYSEPMKRVIASNEGFCR--RVT 328 (438)
Q Consensus 268 iDEid~l~~~~~~~~--~~~~~~~~~~ll~~~~~---------------~~v~vi~~~~~~~~~~~~~~~p~l~~--R~~ 328 (438)
|||||++.+++++.+ ......+++.|++.||+ .+++||+||+..... +|+++| ||+
T Consensus 105 iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~l-----d~al~R~~R~d 179 (293)
T 3t15_A 105 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTL-----YAPLIRDGRME 179 (293)
T ss_dssp EECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC-------CHHHHHHHEE
T ss_pred EechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccC-----CHHHhCCCCCc
Confidence 999999998655322 22345677888888762 357888887654432 788886 998
Q ss_pred cceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhh
Q 013706 329 KFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ 384 (438)
Q Consensus 329 ~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (438)
..|.+ |+.+++.+|++.++... .++.+.++.++.++.++++
T Consensus 180 ~~i~~--P~~~~r~~Il~~~~~~~-------------~~~~~~l~~~~~~~~~~~l 220 (293)
T 3t15_A 180 KFYWA--PTREDRIGVCTGIFRTD-------------NVPAEDVVKIVDNFPGQSI 220 (293)
T ss_dssp EEEEC--CCHHHHHHHHHHHHGGG-------------CCCHHHHHHHHHHSCSCCH
T ss_pred eeEeC--cCHHHHHHHHHHhccCC-------------CCCHHHHHHHhCCCCcccH
Confidence 88875 59999999999887642 3567788888888765444
No 39
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.90 E-value=1.3e-23 Score=172.62 Aligned_cols=124 Identities=26% Similarity=0.336 Sum_probs=112.3
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
..|+||||+||..|+.+++++|++ .+++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 8 ~~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A 83 (137)
T 3c5r_A 8 HRGETLLHIASIKGDIPSVEYLLQ----NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDA 83 (137)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHH
Confidence 479999999999999999999999 6889999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhc
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~ 134 (438)
+ ..++.+++++|+++|++++.+|..|.||+ +.|...+..+++.++...
T Consensus 84 ~----~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl-~~A~~~~~~~~l~~l~~~ 131 (137)
T 3c5r_A 84 A----KNGHVDIVKLLLSYGASRNAVNIFGLRPV-DYTDDESMKSLLLLPEKN 131 (137)
T ss_dssp H----HTTCHHHHHHHHHTTCCTTCCCTTSCCGG-GGCCCHHHHHHHSCC---
T ss_pred H----HcCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHhhccHHHHHhhcccc
Confidence 9 88999999999999999999999999999 556556666666655543
No 40
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.90 E-value=7.2e-23 Score=194.70 Aligned_cols=206 Identities=20% Similarity=0.271 Sum_probs=155.2
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 239 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 239 (438)
.|++++|.+.+++.+..++..... ...++.++||+||||||||++|+++++.+.. +++.+++
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~-----------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~-------~~~~~~~ 88 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKK-----------RNECLDHILFSGPAGLGKTTLANIISYEMSA-------NIKTTAA 88 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHH-----------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTC-------CEEEEEG
T ss_pred CHHHhCChHHHHHHHHHHHHHHHh-----------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-------CeEEecc
Confidence 588999999999999987664421 1235678999999999999999999998754 7888887
Q ss_pred ccccccccccchHHHHHHHHH-ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCC-----------------
Q 013706 240 TDLVGEFVGHTGPKTRRRIKE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK----------------- 301 (438)
Q Consensus 240 ~~~~~~~~g~~~~~~~~~~~~-a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~----------------- 301 (438)
+.+. ....+...+.. +.+++|||||||.+.+ ..++.|+..++++.
T Consensus 89 ~~~~------~~~~~~~~~~~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~ 151 (338)
T 3pfi_A 89 PMIE------KSGDLAAILTNLSEGDILFIDEIHRLSP-----------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKID 151 (338)
T ss_dssp GGCC------SHHHHHHHHHTCCTTCEEEEETGGGCCH-----------HHHHHHHHHHHTSCC---------CCCCCCC
T ss_pred hhcc------chhHHHHHHHhccCCCEEEEechhhcCH-----------HHHHHHHHHHHhccchhhcccCccccceecC
Confidence 6542 23344555554 5779999999999975 34477888777643
Q ss_pred ---EEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHH
Q 013706 302 ---VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK 378 (438)
Q Consensus 302 ---v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (438)
+++|++|+.... .+|+|++||+..+.|++|+.+++..++..++.+.. ..++++++..+..
T Consensus 152 ~~~~~~i~atn~~~~-----l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~-----------~~~~~~~~~~l~~- 214 (338)
T 3pfi_A 152 LPKFTLIGATTRAGM-----LSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN-----------KTCEEKAALEIAK- 214 (338)
T ss_dssp CCCCEEEEEESCGGG-----SCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-----------CEECHHHHHHHHH-
T ss_pred CCCeEEEEeCCCccc-----cCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHHH-
Confidence 678888877554 28899999999999999999999999999887642 3457788888877
Q ss_pred HhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHH
Q 013706 379 ETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 432 (438)
Q Consensus 379 ~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~ 432 (438)
.| +||.|.+.++++++...+... +...|+.+++..++..
T Consensus 215 ~~------~G~~r~l~~~l~~~~~~a~~~---------~~~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 215 RS------RSTPRIALRLLKRVRDFADVN---------DEEIITEKRANEALNS 253 (338)
T ss_dssp TT------TTCHHHHHHHHHHHHHHHHHT---------TCSEECHHHHHHHHHH
T ss_pred HH------CcCHHHHHHHHHHHHHHHHhh---------cCCccCHHHHHHHHHH
Confidence 56 899999999999987655211 1124556666655544
No 41
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.89 E-value=2.8e-23 Score=167.52 Aligned_cols=126 Identities=46% Similarity=0.656 Sum_probs=118.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
+|+||||+|+..|+.+++++|++ .+.+++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~ 76 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 76 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHH----HTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHH----cCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHH
Confidence 59999999999999999999999 68889999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706 83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~ 137 (438)
..++.+++++|+++|++++..|..|.||+ +.|...++.+++++|+..|++
T Consensus 77 ----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 77 ----RNGHLEVVKLLLEAGADVNAKDKNGRTPL-HLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp ----HTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHTCC
T ss_pred ----HcChHHHHHHHHHcCCCCcccCCCCCCHH-HHHHHcCcHHHHHHHHHcCCC
Confidence 88999999999999999999999999999 666667889999999987753
No 42
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.89 E-value=3e-23 Score=202.73 Aligned_cols=209 Identities=20% Similarity=0.292 Sum_probs=151.7
Q ss_pred HHHhhhcChHHHH---HHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEE
Q 013706 159 NELSNIVGLHELK---IQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT 235 (438)
Q Consensus 159 ~~l~~i~G~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~ 235 (438)
..|++++|++.+. ..+...+.. ....++||+||||||||++|++||+.+.. +|+
T Consensus 23 ~~l~~ivGq~~~~~~~~~L~~~i~~----------------~~~~~vLL~GppGtGKTtlAr~ia~~~~~-------~f~ 79 (447)
T 3pvs_A 23 ENLAQYIGQQHLLAAGKPLPRAIEA----------------GHLHSMILWGPPGTGKTTLAEVIARYANA-------DVE 79 (447)
T ss_dssp CSTTTCCSCHHHHSTTSHHHHHHHH----------------TCCCEEEEECSTTSSHHHHHHHHHHHTTC-------EEE
T ss_pred CCHHHhCCcHHHHhchHHHHHHHHc----------------CCCcEEEEECCCCCcHHHHHHHHHHHhCC-------CeE
Confidence 3588999999988 555554331 13468999999999999999999998754 777
Q ss_pred EeecccccccccccchHHHHHHHHH-------ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEec
Q 013706 236 EVQRTDLVGEFVGHTGPKTRRRIKE-------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAG 308 (438)
Q Consensus 236 ~~~~~~~~~~~~g~~~~~~~~~~~~-------a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~ 308 (438)
.+++... ..+.++..++. +.++||||||||.+....| +.|+..++++.+++|++|
T Consensus 80 ~l~a~~~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q-----------~~LL~~le~~~v~lI~at 141 (447)
T 3pvs_A 80 RISAVTS-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQ-----------DAFLPHIEDGTITFIGAT 141 (447)
T ss_dssp EEETTTC-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----------------CCHHHHHTTSCEEEEEE
T ss_pred EEEeccC-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHH-----------HHHHHHHhcCceEEEecC
Confidence 7776432 22334444443 3579999999999987655 789999999999999999
Q ss_pred CChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhcccccccccccc-ccccccHHHHHHHHHHHhhHhhhcc
Q 013706 309 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFK-LHSSCSMDAIAALIEKETTEKQRRE 387 (438)
Q Consensus 309 ~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (438)
+.++...+ +++|++|+ .++.|++|+.+++..++.+++.+... ++. ....++++++..+... | .
T Consensus 142 t~n~~~~l---~~aL~sR~-~v~~l~~l~~edi~~il~~~l~~~~~-----~~~~~~~~i~~~al~~L~~~-~------~ 205 (447)
T 3pvs_A 142 TENPSFEL---NSALLSRA-RVYLLKSLSTEDIEQVLTQAMEDKTR-----GYGGQDIVLPDETRRAIAEL-V------N 205 (447)
T ss_dssp SSCGGGSS---CHHHHTTE-EEEECCCCCHHHHHHHHHHHHHCTTT-----SSTTSSEECCHHHHHHHHHH-H------C
T ss_pred CCCccccc---CHHHhCce-eEEeeCCcCHHHHHHHHHHHHHHHhh-----hhccccCcCCHHHHHHHHHH-C------C
Confidence 88776544 89999998 58889999999999999999987432 221 2345788888888887 5 8
Q ss_pred ccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHH
Q 013706 388 MNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 431 (438)
Q Consensus 388 ~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~ 431 (438)
||.|.+.++++.+...+... ..+...|+.+|+.+++.
T Consensus 206 Gd~R~lln~Le~a~~~a~~~-------~~~~~~It~e~v~~~l~ 242 (447)
T 3pvs_A 206 GDARRALNTLEMMADMAEVD-------DSGKRVLKPELLTEIAG 242 (447)
T ss_dssp SCHHHHHHHHHHHHHHSCBC-------TTSCEECCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcccc-------cCCCCccCHHHHHHHHh
Confidence 99999999999998775211 01223466666665543
No 43
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.89 E-value=7.4e-24 Score=178.20 Aligned_cols=131 Identities=26% Similarity=0.338 Sum_probs=117.4
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCc-HHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMT-PLHL 80 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~ 80 (438)
..|.||||+||..|+.++|++|++ .|++++..|..|+||||+|+ .|+.+++++|+++|++++.+|..|+| |||+
T Consensus 10 ~~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 10 EPSADWLATAAARGRVEEVRALLE----AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD 84 (156)
T ss_dssp CCSTTHHHHHHHHTCHHHHHHHHT----TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred ccchHHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence 578999999999999999999999 68899999999999999985 99999999999999999999999999 9999
Q ss_pred HhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHHH
Q 013706 81 SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 142 (438)
Q Consensus 81 A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~~ 142 (438)
|+ ..|+.+++++|+++|++++.+|..|+||| +.|+..++.+++++|+..+++...+.
T Consensus 85 A~----~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl-~~A~~~~~~~~v~~Ll~~ga~~~~~~ 141 (156)
T 1bi7_B 85 AA----REGFLDTLVVLHRAGARLDVRDAWGRLPV-DLAEELGHRDVARYLRAAAGGTRGSN 141 (156)
T ss_dssp HH----HHTCHHHHHHHHHHTCCSSCCCTTCCCHH-HHHHHHTCHHHHHHHSSCC-------
T ss_pred HH----HCCCHHHHHHHHHcCCCCcccCCCCCCHH-HHHHHhCHHHHHHHHHHcCCCCCccC
Confidence 99 88999999999999999999999999999 66666789999999999998866654
No 44
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.89 E-value=2e-23 Score=178.48 Aligned_cols=125 Identities=28% Similarity=0.349 Sum_probs=72.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
.|+||||+||..|+.+++++|++ .|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 35 ~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 110 (172)
T 3v30_A 35 RGFTPLIWASAFGEIETVRFLLE----WGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAV 110 (172)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH----cCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 45556666666666666666655 45555555555566666666666666666666656655555555666666655
Q ss_pred hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccc
Q 013706 83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSE 136 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~ 136 (438)
..++.+++++|+++|++++..|..|+||+ +.|...++.+++++|+.++.
T Consensus 111 ----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l-~~A~~~~~~~~~~~L~~~~~ 159 (172)
T 3v30_A 111 ----RGNHVKCVEALLARGADLTTEADSGYTPM-DLAVALGYRKVQQVIENHIL 159 (172)
T ss_dssp ----HTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHHHHHH
T ss_pred ----HcCCHHHHHHHHHcCCCccccCCCCCCHH-HHHHHhCcHHHHHHHHHHHH
Confidence 45555566666655666555555566665 33444455555555555443
No 45
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.89 E-value=1.6e-22 Score=195.00 Aligned_cols=261 Identities=16% Similarity=0.218 Sum_probs=162.8
Q ss_pred hHHHHHHHHhh-hcChHHHHHHHHHHHHHhhhHHHH--------------HhcCCCCCCCCCCceEEecCCCCCHHHHHH
Q 013706 153 KMDELENELSN-IVGLHELKIQLRKWAKGMLLDERR--------------KALGLKVGARRPPHMAFLGNPGTGKTMVAR 217 (438)
Q Consensus 153 ~~~~~~~~l~~-i~G~~~~~~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~ll~GppGtGKT~la~ 217 (438)
....+...+++ ++|++.+++.+...+.......+. +.........++.++||+||||||||++|+
T Consensus 11 ~~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 11 APKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CHHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHH
T ss_pred CHHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHH
Confidence 34455566665 799999999998765211111000 000000012356789999999999999999
Q ss_pred HHHHHHHHcCCcCCCCEEEeeccccc-ccccccc-hHHHHHHHH-------HccCcEEEEeCcccccCCCCCCC---chh
Q 013706 218 ILGRLLYMVGILPTDRVTEVQRTDLV-GEFVGHT-GPKTRRRIK-------EAEGGILFVDEAYRLIPMQKADD---KDY 285 (438)
Q Consensus 218 ~la~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~-~~~~~~~~~-------~a~~~il~iDEid~l~~~~~~~~---~~~ 285 (438)
++|+.++. +++.++++.+. ..++|+. ...+...+. .+.++||||||+|.+.+.+.+.. ...
T Consensus 91 ~la~~l~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~ 163 (376)
T 1um8_A 91 TLAKHLDI-------PIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVS 163 (376)
T ss_dssp HHHHHTTC-------CEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------
T ss_pred HHHHHhCC-------CEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccc
Confidence 99998754 88888888765 4567764 444555544 44679999999999988643211 111
Q ss_pred HHHHHHHHHhhccCC-----------------------CEEEEEecCChhHHHHh-------------------------
Q 013706 286 GIEALEEIMSVMDGG-----------------------KVVVIFAGYSEPMKRVI------------------------- 317 (438)
Q Consensus 286 ~~~~~~~ll~~~~~~-----------------------~v~vi~~~~~~~~~~~~------------------------- 317 (438)
...+++.|+..|++. ++++|++++...++..+
T Consensus 164 ~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~ 243 (376)
T 1um8_A 164 GEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAIL 243 (376)
T ss_dssp CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSG
T ss_pred hHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHH
Confidence 224778888888853 24677766533333211
Q ss_pred -----------hhCcCccCCCCcceeCCCCCHHHHHHHHHH----HHhccccccccccccccccccHHHHHHHHHHHhhH
Q 013706 318 -----------ASNEGFCRRVTKFFHFNDFNSEELAKILHI----KMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTE 382 (438)
Q Consensus 318 -----------~~~p~l~~R~~~~i~~~~~~~~e~~~il~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (438)
...|+|.+||+.++.|++++.+++.+|+.. ++.+........+ ....++++++..++.+.|
T Consensus 244 ~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~l~~~~~-- 319 (376)
T 1um8_A 244 HLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDE--VDLIFEEEAIKEIAQLAL-- 319 (376)
T ss_dssp GGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTT--CEEEECHHHHHHHHHHHH--
T ss_pred hhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcC--ceEEECHHHHHHHHHHhc--
Confidence 125889999999999999999999999973 3322111000011 234578899999999876
Q ss_pred hhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHH
Q 013706 383 KQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAG 429 (438)
Q Consensus 383 ~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a 429 (438)
...+|+|.++++++++...+..+.... ......|+.+++.++
T Consensus 320 --~~~~~~R~L~~~le~~~~~~~~~~~~~---~~~~~~i~~~~v~~~ 361 (376)
T 1um8_A 320 --ERKTGARGLRAIIEDFCLDIMFDLPKL---KGSEVRITKDCVLKQ 361 (376)
T ss_dssp --HTTCTGGGHHHHHHHHHHHHHHTGGGG---TTSEEEECHHHHTTS
T ss_pred --ccccCcHHHHHHHHHHHHHHHhhccCC---CCCEEEEeHHHhcCC
Confidence 124899999999999999876665422 123356888887654
No 46
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.89 E-value=7.3e-23 Score=176.19 Aligned_cols=126 Identities=25% Similarity=0.304 Sum_probs=83.4
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
.|+||||+||..|+.+++++|++ .|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 38 ~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~ 113 (179)
T 3f6q_A 38 HGFSPLHWACREGRSAVVEMLIM----RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYAC 113 (179)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCCHHHHHHHcCcHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence 46666666666666666666666 46666666666666666666666666666666666666666666666666666
Q ss_pred hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706 83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~ 137 (438)
..++.+++++|+++|++++..|..|.||+ +.|...+...++++|+..+++
T Consensus 114 ----~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl-~~A~~~~~~~~~~~L~~~g~~ 163 (179)
T 3f6q_A 114 ----FWGQDQVAEDLVANGALVSICNKYGEMPV-DKAKAPLRELLRERAEKMGQN 163 (179)
T ss_dssp ----HTTCHHHHHHHHHTTCCSSBCCTTSCCGG-GGSCHHHHHHHHHHHHHTTCC
T ss_pred ----HcCCHHHHHHHHHCCCCcchhccCCCCcH-HHHHHHHHHHHHHHHHHhhcC
Confidence 55666666666666666666666666666 444445566666666665544
No 47
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.89 E-value=6.2e-23 Score=171.88 Aligned_cols=120 Identities=33% Similarity=0.498 Sum_probs=63.4
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
.|+||||+||..|+.+++++|++ .|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 33 ~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 108 (153)
T 1awc_B 33 LGTSPLHLAAQYGHFSTTEVLLR----AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWAT 108 (153)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHT----TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 34555555555555555555555 34455555555555555555555555555555555555555555555555555
Q ss_pred hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHH
Q 013706 83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELL 131 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL 131 (438)
..++.+++++|+++|++++.+|..|.||+ +.|...++.+++++|
T Consensus 109 ----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l-~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 109 ----EHNHQEVVELLIKYGADVHTQSKFCKTAF-DISIDNGNEDLAEIL 152 (153)
T ss_dssp ----HTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHH
T ss_pred ----HcCCHHHHHHHHHcCCCccccCCCCCCHH-HHHHHcCCHHHHHHh
Confidence 44555555555555555555555555555 333334444444443
No 48
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.89 E-value=5.5e-23 Score=165.53 Aligned_cols=109 Identities=28% Similarity=0.323 Sum_probs=103.4
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
.|.||||+|+..|+.+++++|++ .+.+++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 6 ~~~~~l~~A~~~~~~~~v~~ll~----~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~ 81 (123)
T 3aaa_C 6 MCDKEFMWALKNGDLDEVKDYVA----KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAV 81 (123)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHH----TTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHH----cCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence 68899999999999999999999 68899999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcHHHHHHHHhCCCCCcccCCCCCcccccccc
Q 013706 83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN 120 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~ 120 (438)
..++.+++++|+++|++++.+|..|+||+ +.|.
T Consensus 82 ----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l-~~A~ 114 (123)
T 3aaa_C 82 ----YEGHVSCVKLLLSKGADKTVKGPDGLTAF-EATD 114 (123)
T ss_dssp ----HHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHCC
T ss_pred ----HcCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHhC
Confidence 88999999999999999999999999999 5553
No 49
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.88 E-value=1.3e-22 Score=172.86 Aligned_cols=129 Identities=34% Similarity=0.455 Sum_probs=108.6
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
.+.||||+||..|+.++|++|++ .|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 13 ~~~~~l~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 88 (169)
T 2y1l_E 13 DLGKKLLEAARAGRDDEVRILMA----NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAA 88 (169)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred cccchHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence 35688899999899999998888 67888888888889999999888889999998888888888888889999888
Q ss_pred hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706 83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK 140 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~ 140 (438)
..++.+++++|+++|++++..|..|+||| +.|+..++.+++++|+..+++...
T Consensus 89 ----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~ 141 (169)
T 2y1l_E 89 ----LFGHLEIVEVLLKNGADVNANDMEGHTPL-HLAAMFGHLEIVEVLLKNGADVNA 141 (169)
T ss_dssp ----HTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred ----HcCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCCC
Confidence 77888888888888888888888888998 555556788888888887766443
No 50
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.88 E-value=3.2e-22 Score=192.52 Aligned_cols=217 Identities=17% Similarity=0.211 Sum_probs=154.1
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 239 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 239 (438)
.|++++|++.+++.+..+...+. .+..++.++||+||||||||++|+++++.+.. ..+++.+++
T Consensus 42 ~~~~ivG~~~~~~~l~~l~~~~~-----------~~~~~~~~vLl~GppGtGKT~la~~la~~l~~-----~~~~~~~~~ 105 (368)
T 3uk6_A 42 ASQGMVGQLAARRAAGVVLEMIR-----------EGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP-----DTPFTAIAG 105 (368)
T ss_dssp EETTEESCHHHHHHHHHHHHHHH-----------TTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS-----SCCEEEEEG
T ss_pred chhhccChHHHHHHHHHHHHHHH-----------cCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc-----cCCcccccc
Confidence 38899999999998877655442 11234578999999999999999999998853 236666665
Q ss_pred ccccccc-------------------------------------------------cccchHHHHHHHHHcc--------
Q 013706 240 TDLVGEF-------------------------------------------------VGHTGPKTRRRIKEAE-------- 262 (438)
Q Consensus 240 ~~~~~~~-------------------------------------------------~g~~~~~~~~~~~~a~-------- 262 (438)
..+...+ .|+....++..+..+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~ 185 (368)
T 3uk6_A 106 SEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGK 185 (368)
T ss_dssp GGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcc
Confidence 5433222 2233444555553331
Q ss_pred ----CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC--CEEEEEec---------CChhHHHHhhhCcCccCCC
Q 013706 263 ----GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--KVVVIFAG---------YSEPMKRVIASNEGFCRRV 327 (438)
Q Consensus 263 ----~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~--~v~vi~~~---------~~~~~~~~~~~~p~l~~R~ 327 (438)
++||||||+|.+.+ ..++.|+..+++. .+++++++ +.++...+ +|++++||
T Consensus 186 ~~~~~~vl~IDEi~~l~~-----------~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l---~~~l~sR~ 251 (368)
T 3uk6_A 186 AEIIPGVLFIDEVHMLDI-----------ESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGI---PIDLLDRL 251 (368)
T ss_dssp ---CBCEEEEESGGGSBH-----------HHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTC---CHHHHTTE
T ss_pred ccccCceEEEhhccccCh-----------HHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccC---CHHHHhhc
Confidence 36999999999975 4568888888763 34444443 11222222 78999999
Q ss_pred CcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhcc
Q 013706 328 TKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLR 407 (438)
Q Consensus 328 ~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r 407 (438)
.. +.|++|+.+++.+|++.++.+.. ..++++++..++...+ +||.|.+.+++++|...+..+
T Consensus 252 ~~-i~~~~~~~~e~~~il~~~~~~~~-----------~~~~~~~l~~l~~~~~------~G~~r~~~~ll~~a~~~A~~~ 313 (368)
T 3uk6_A 252 LI-VSTTPYSEKDTKQILRIRCEEED-----------VEMSEDAYTVLTRIGL------ETSLRYAIQLITAASLVCRKR 313 (368)
T ss_dssp EE-EEECCCCHHHHHHHHHHHHHHTT-----------CCBCHHHHHHHHHHHH------HSCHHHHHHHHHHHHHHHHHT
T ss_pred cE-EEecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHHh
Confidence 55 89999999999999999887642 3467888888888776 589999999999998776322
Q ss_pred ccCCCCChhhhhhccHHHHHHHHHHH
Q 013706 408 LSFDCLDTDELRTITLEDLEAGLKLL 433 (438)
Q Consensus 408 ~~~~~~~~~~~~~i~~~d~~~a~~~~ 433 (438)
+...|+.+|+.++++.+
T Consensus 314 ---------~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 314 ---------KGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp ---------TCSSBCHHHHHHHHHHS
T ss_pred ---------CCCCCCHHHHHHHHHHh
Confidence 34579999999988763
No 51
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.88 E-value=2.7e-23 Score=179.81 Aligned_cols=128 Identities=17% Similarity=0.107 Sum_probs=110.7
Q ss_pred CCCcHHHHHHHcCCH----HHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCC------HHHHHHHHHCCCCcccccC
Q 013706 3 MAQTPLHVSAGYNKA----EIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGC------NEAAKLLLAHGAFIEAKAN 72 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~------~~~v~~Ll~~g~~~~~~~~ 72 (438)
.|+||||+|+..|+. +++++|++ .|+++|.+|..|+||||+|+..|+ .+++++|+++|+++|.+|.
T Consensus 37 ~g~T~Lh~A~~~~~~~~~~~iv~~Ll~----~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~ 112 (186)
T 3t8k_A 37 LKSNILYDVLRNNNDEARYKISMFLIN----KGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYK 112 (186)
T ss_dssp HTTTHHHHHTTCSCHHHHHHHHHHHHH----TTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBG
T ss_pred CCCCHHHHHHHcCCcchHHHHHHHHHH----CCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCC
Confidence 489999999999985 58999999 799999999999999999999887 5789999999999999999
Q ss_pred CCC-cHHHHHhhcccc-cCcHHHHHHHHh-CCCCCcccCCCCCccccccccCCCchhHHHHHHhcc
Q 013706 73 NGM-TPLHLSVWYSIR-SEDYATVKTLLE-YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS 135 (438)
Q Consensus 73 ~g~-t~L~~A~~~~~~-~~~~~~~~~Ll~-~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~ 135 (438)
.|+ ||||+|+..... .++.+++++|++ +|++++.+|..|+||| +.|...+..+++++|..+.
T Consensus 113 ~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL-~~A~~~~~~~~v~~L~~~~ 177 (186)
T 3t8k_A 113 PYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTAL-EFVKRCQKPIALKMMEDYI 177 (186)
T ss_dssp GGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHH-HHHHTTTCHHHHHHHHHHH
T ss_pred CcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHH-HHHHHcCCHHHHHHHHHHH
Confidence 999 999999832110 334678999999 8999999999999999 6666678889999988654
No 52
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.88 E-value=1.4e-22 Score=172.19 Aligned_cols=129 Identities=22% Similarity=0.228 Sum_probs=115.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
.|.||||.||..|+.+++++|++ .+.+++..|..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~----~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 77 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIE----QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLAC 77 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHH----HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence 68999999999999999999998 67889999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706 83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK 140 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~ 140 (438)
..++.+++++|+++|++++..|..|+||| +.|+..++.+++++|+..+++...
T Consensus 78 ----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~ 130 (167)
T 3v31_A 78 ----SKGYTDIVKMLLDCGVDVNEYDWNGGTPL-LYAVHGNHVKCVKMLLESGADPTI 130 (167)
T ss_dssp ----HHTCHHHHHHHHHHTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred ----HcCCHHHHHHHHHCCCCCCcCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCCC
Confidence 78899999999999999999999999999 556567888999999888776544
No 53
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.88 E-value=9.2e-23 Score=204.65 Aligned_cols=231 Identities=17% Similarity=0.204 Sum_probs=156.5
Q ss_pred HhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecc
Q 013706 161 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 240 (438)
Q Consensus 161 l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 240 (438)
.++++|++++++.+.+.+.... .... .++.+++|+||||||||++|+++|..+.. ++..+++.
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~-------~~~~---~~g~~vll~Gp~GtGKTtlar~ia~~l~~-------~~~~i~~~ 142 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQK-------LTKS---LKGPILCLAGPPGVGKTSLAKSIAKSLGR-------KFVRISLG 142 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHH-------HSSS---CCSCEEEEESSSSSSHHHHHHHHHHHHTC-------EEEEECCC
T ss_pred HHHhccHHHHHHHHHHHHHHHH-------hccc---CCCCEEEEECCCCCCHHHHHHHHHHhcCC-------CeEEEEec
Confidence 3568999999999876533111 1111 15678999999999999999999998854 66777665
Q ss_pred cccc---------cccccchHHHHHHHHHc--cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC----------
Q 013706 241 DLVG---------EFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---------- 299 (438)
Q Consensus 241 ~~~~---------~~~g~~~~~~~~~~~~a--~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~---------- 299 (438)
.+.. .|+|.....+...|..+ .++||||||+|++.+.+++ ...+.|++.|+.
T Consensus 143 ~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~-------~~~~~LL~~ld~~~~~~~~~~~ 215 (543)
T 3m6a_A 143 GVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRG-------DPSSAMLEVLDPEQNSSFSDHY 215 (543)
T ss_dssp C--------------------CHHHHHHTTCSSSEEEEEEESSSCC----------------CCGGGTCTTTTTBCCCSS
T ss_pred ccchhhhhhhHHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhcc-------CHHHHHHHHHhhhhcceeeccc
Confidence 5332 57777777888888887 5689999999999986542 245778888863
Q ss_pred -------CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhcccccccccccc-ccccccHHH
Q 013706 300 -------GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFK-LHSSCSMDA 371 (438)
Q Consensus 300 -------~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~-~~~~~~~~~ 371 (438)
.++++|++++.... .+|+|++|| .+|.|++|+.+++.+|++.++.+... ..+++. ....+++++
T Consensus 216 ~~~~~~~~~v~iI~ttN~~~~-----l~~aL~~R~-~vi~~~~~~~~e~~~Il~~~l~~~~~--~~~~~~~~~i~i~~~~ 287 (543)
T 3m6a_A 216 IEETFDLSKVLFIATANNLAT-----IPGPLRDRM-EIINIAGYTEIEKLEIVKDHLLPKQI--KEHGLKKSNLQLRDQA 287 (543)
T ss_dssp SCCCCBCSSCEEEEECSSTTT-----SCHHHHHHE-EEEECCCCCHHHHHHHHHHTHHHHHH--HHTTCCGGGCEECHHH
T ss_pred CCeeecccceEEEeccCcccc-----CCHHHHhhc-ceeeeCCCCHHHHHHHHHHHHHHHHH--HHcCCCcccccCCHHH
Confidence 34678877665432 289999999 57999999999999999988743211 011221 234578899
Q ss_pred HHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHH
Q 013706 372 IAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 431 (438)
Q Consensus 372 ~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~ 431 (438)
+..++..+. .++|+|.|++.++++++.++.++..+. .....|+.+|+.+++.
T Consensus 288 l~~l~~~~~-----~~~~vR~L~~~i~~~~~~aa~~~~~~~---~~~~~It~~~l~~~Lg 339 (543)
T 3m6a_A 288 ILDIIRYYT-----REAGVRSLERQLAAICRKAAKAIVAEE---RKRITVTEKNLQDFIG 339 (543)
T ss_dssp HHHHHHHHC-----CCSSSHHHHHHHHHHHHHHHHHHHTTC---CSCCEECTTTTHHHHC
T ss_pred HHHHHHhCC-----hhhchhHHHHHHHHHHHHHHHHHHhcC---CcceecCHHHHHHHhC
Confidence 999888664 278999999999999998877754321 2345688888887764
No 54
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.88 E-value=1e-22 Score=172.18 Aligned_cols=125 Identities=34% Similarity=0.485 Sum_probs=98.6
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
...||||.|+..|+.+++++|++ .+++++..|..|+||||+|+. |+.+++++|+++|++++.++..|.||||+|+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 78 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQ----NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAA 78 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTT----SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHh----CCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 45678888888888888888887 577788888888888888877 8888888888888888888888888888888
Q ss_pred hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706 83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~ 137 (438)
..++.+++++|+++|++++..|..|+||| |.|+..++.+++++|+..+.+
T Consensus 79 ----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~ 128 (162)
T 1ihb_A 79 ----RAGFLDTLQTLLEFQADVNIEDNEGNLPL-HLAAKEGHLRVVEFLVKHTAS 128 (162)
T ss_dssp ----HHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHSCC
T ss_pred ----HcCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHcCCHHHHHHHHHccCC
Confidence 67788888888888888888888888888 555556677788887776654
No 55
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.88 E-value=2.1e-22 Score=175.40 Aligned_cols=131 Identities=28% Similarity=0.337 Sum_probs=112.0
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
..|+||||+||..|+.+++++|++ .+++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 33 ~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 108 (192)
T 2rfm_A 33 SYNRTPLMVACMLGMENAIDKLVE----NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWS 108 (192)
T ss_dssp TTCCCHHHHHHHHTCGGGHHHHHH----HHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHH----hccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence 368899999999999999999998 6788888888899999999999999999999999999998888999999999
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 141 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~ 141 (438)
+ ..++.+++++|+++|++++..|..|.||| +.|+..++.+++++|+..+++...+
T Consensus 109 ~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~~ 163 (192)
T 2rfm_A 109 I----IFGYSEMSYFLLEHGANVNDRNLEGETPL-IVASKYGRSEIVKKLLELGADISAR 163 (192)
T ss_dssp H----HHTCHHHHHHHHHTTCCSSCCCTTCCCHH-HHHHHHTCHHHHHHHHHTTCCTTCB
T ss_pred H----HcCCHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCCCCc
Confidence 8 77888999999999999999999999999 5555567888888888877765443
No 56
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.88 E-value=1.8e-22 Score=171.60 Aligned_cols=127 Identities=25% Similarity=0.329 Sum_probs=118.7
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
..|+||||+|+..|+.+++++|++ .+++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 34 ~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 109 (167)
T 3v31_A 34 EEGFTPLMWAAAHGQIAVVEFLLQ----NGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYA 109 (167)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHH
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHH----cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHH
Confidence 368999999999999999999999 6889999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~ 137 (438)
+ ..++.+++++|+++|++++..|..|.||+ +.|...++.+++++|..++..
T Consensus 110 ~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~~~~~L~~~~~~ 160 (167)
T 3v31_A 110 V----HGNHVKCVKMLLESGADPTIETDSGYNSM-DLAVALGYRSVQQVIESHLLK 160 (167)
T ss_dssp H----HTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHHHHHHH
T ss_pred H----HcCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHcCcHHHHHHHHHHHHH
Confidence 9 88999999999999999999999999999 666667889999999876543
No 57
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.88 E-value=1.2e-22 Score=186.66 Aligned_cols=131 Identities=31% Similarity=0.355 Sum_probs=114.6
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
..|+||||+||..|+.++|++|++ .+++++..+..|.||+|+|+..++.+++++|+++|+++|.+|..|+||||+|
T Consensus 84 ~~G~TpLh~A~~~g~~~~v~~Ll~----~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A 159 (269)
T 4b93_B 84 QDGSSPLHVAALHGRADLIPLLLK----HGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYA 159 (269)
T ss_dssp TTSCCHHHHHHHTTCTTHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHH
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHh----cCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 468999999999999999999998 6788888888999999999999999999999999999999999999999999
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 141 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~ 141 (438)
| ..|+.+++++|+++|++++..|..|+||| |.|+..++.+++++|+..|++...+
T Consensus 160 ~----~~g~~~~v~~Ll~~gadvn~~~~~g~t~L-h~A~~~g~~~~v~~Ll~~Gad~~~~ 214 (269)
T 4b93_B 160 C----SGGHHELVALLLQHGASINASNNKGNTAL-HEAVIEKHVFVVELLLLHGASVQVL 214 (269)
T ss_dssp H----HTTCGGGHHHHHHTTCCTTCBCTTSCBHH-HHHHHTTCHHHHHHHHHTTCCSCCC
T ss_pred H----HCCCHHHHHHHHHCCCCCCccccCCCcHH-HHHHHcCCHHHHHHHHHCCCCCCCc
Confidence 8 78888999999999999999999999999 5565677888888888888765443
No 58
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.88 E-value=1.9e-22 Score=180.76 Aligned_cols=130 Identities=21% Similarity=0.198 Sum_probs=120.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
.|.||||+||..|+.++|++|++ .|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 20 ~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~ 95 (229)
T 2vge_A 20 NPLVLLLDAALTGELEVVQQAVK----EMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAA 95 (229)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHH----HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred chhHHHHHHHHcCCHHHHHHHHh----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence 67899999999999999999999 78899999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcHHHHHHHHhCCCCCcccC-CCCCccccccc--cCCCchhHHHHHHhccchHHHH
Q 013706 83 WYSIRSEDYATVKTLLEYNADCSAKD-NEGKTPLDHLS--NGPGSAKLRELLLWHSEEQRKR 141 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d-~~g~t~l~~~a--~~~~~~~~~~lL~~~~~~~~~~ 141 (438)
..|+.+++++|+++|++++..+ ..|+||| +.| +..++.+++++|+..+++....
T Consensus 96 ----~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL-~~A~a~~~~~~~~v~~Ll~~ga~~~~~ 152 (229)
T 2vge_A 96 ----SCNDTVICMALVQHGAAIFATTLSDGATAF-EKCDPYREGYADCATYLADVEQSMGLM 152 (229)
T ss_dssp ----HTTCHHHHHHHHTTTCCTTCCCSSTTCCTG-GGCCTTSTTHHHHHHHHHHHHHHTTTS
T ss_pred ----HcCCHHHHHHHHHcCCCcccccCCCCCCHH-HHHHHHhcChHHHHHHHHHcCCCcccc
Confidence 8899999999999999999986 6999999 555 7788999999999887664443
No 59
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.88 E-value=2.1e-22 Score=210.74 Aligned_cols=244 Identities=19% Similarity=0.274 Sum_probs=185.7
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|++++|++.+++++.++ +..+..++..+..+...++.++||+||||||||++|+++|..+.. +++.++
T Consensus 201 v~~~di~G~~~~~~~l~e~---i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~-------~~i~v~ 270 (806)
T 1ypw_A 201 VGYDDVGGCRKQLAQIKEM---VELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-------FFFLIN 270 (806)
T ss_dssp CCGGGCCSCSGGGGHHHHH---HHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC-------EEEEEE
T ss_pred CCHHHhCChHHHHHHHHHH---HHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC-------cEEEEE
Confidence 4689999999999999987 445667778887788888999999999999999999999997654 789999
Q ss_pred cccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC----CCEEEEEecCCh
Q 013706 239 RTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG----GKVVVIFAGYSE 311 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~----~~v~vi~~~~~~ 311 (438)
+.++.+.+.|+.+..++.+|..+. ++++||||+|.+.+.++....+...++++.|+..+++ ..+++|++++..
T Consensus 271 ~~~l~~~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~ 350 (806)
T 1ypw_A 271 GPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (806)
T ss_dssp HHHHSSSSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCT
T ss_pred chHhhhhhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEecccCCc
Confidence 999999999999999999998763 5899999999999988776677778889999999875 457888887654
Q ss_pred hHHHHhhhCcCccC--CCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhcccc
Q 013706 312 PMKRVIASNEGFCR--RVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN 389 (438)
Q Consensus 312 ~~~~~~~~~p~l~~--R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 389 (438)
.. .+|++++ ||+..+.++.|+.+++.+|++.++.+.. +..+.+.+.+..... ...
T Consensus 351 ~~-----ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~---------l~~~~~l~~la~~t~---------g~~ 407 (806)
T 1ypw_A 351 NS-----IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK---------LADDVDLEQVANETH---------GHV 407 (806)
T ss_dssp TT-----SCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSC---------CCTTCCTHHHHHSCS---------SCC
T ss_pred hh-----cCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCC---------CcccchhHHHHHhhc---------Ccc
Confidence 32 2899988 9999999999999999999998876542 223333333333322 334
Q ss_pred ccchHHHHHHHHHHhhccccCCC------CCh--hhhhhccHHHHHHHHHHHHh
Q 013706 390 GGLVDPMLVNARENLDLRLSFDC------LDT--DELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 390 ~~~l~~~~~~a~~~~~~r~~~~~------~~~--~~~~~i~~~d~~~a~~~~~~ 435 (438)
++++..++..+...+..+..... ... .....++.+|+..++....|
T Consensus 408 g~dl~~l~~ea~~~a~r~~~~~i~~~~~~~~~~~~~~~~v~~~d~~~al~~~~~ 461 (806)
T 1ypw_A 408 GADLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNP 461 (806)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTSCHHHHCCHHHHTTCCCCTTHHHHHHHHSCC
T ss_pred hHHHHHHHHHHHHHHHhhhccccchhhhccchhhhhhhhhhhhhhhccccccCc
Confidence 56677777666655544322111 011 11235788899988877654
No 60
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.87 E-value=7.7e-22 Score=194.58 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=86.0
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 239 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 239 (438)
.|++++|++.+++.+..++..+. .+..++.++||+||||||||++|+++|++++. ..+|+.+++
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~-----------~~~~~~~~iLl~GppGtGKT~la~ala~~l~~-----~~~~~~~~~ 98 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIK-----------SKKMAGRAVLLAGPPGTGKTALALAIAQELGS-----KVPFCPMVG 98 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHH-----------TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCT-----TSCEEEEEG
T ss_pred chhhccCHHHHHHHHHHHHHHHH-----------hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCC-----CceEEEEeH
Confidence 47899999999999988765442 12346689999999999999999999999863 238999999
Q ss_pred ccccccccccchHHHHHHHHHc------cCcEEEEeCcccccCCCC
Q 013706 240 TDLVGEFVGHTGPKTRRRIKEA------EGGILFVDEAYRLIPMQK 279 (438)
Q Consensus 240 ~~~~~~~~g~~~~~~~~~~~~a------~~~il~iDEid~l~~~~~ 279 (438)
+++.++++|+++. +++.|..| .++||||||+|.++++++
T Consensus 99 ~~~~~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~ 143 (456)
T 2c9o_A 99 SEVYSTEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCET 143 (456)
T ss_dssp GGGCCSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--
T ss_pred HHHHHHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccC
Confidence 9999999999987 89999988 459999999999986543
No 61
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.87 E-value=9.1e-22 Score=184.84 Aligned_cols=223 Identities=18% Similarity=0.280 Sum_probs=157.2
Q ss_pred HHHHH-hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEE
Q 013706 157 LENEL-SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVT 235 (438)
Q Consensus 157 ~~~~l-~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~ 235 (438)
+...+ ++++|++.+++.+...+.... .+......+..+++|+||||||||++|+++|+.+... ..+++
T Consensus 11 l~~~l~~~i~G~~~~~~~l~~~i~~~~-------~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~----~~~~~ 79 (311)
T 4fcw_A 11 LEEELHKRVVGQDEAIRAVADAIRRAR-------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT----EEAMI 79 (311)
T ss_dssp HHHHHHTTCCSCHHHHHHHHHHHHHHH-------HTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC----GGGEE
T ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHh-------cCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC----CcceE
Confidence 33444 467899999998887754331 1112222234579999999999999999999988532 23688
Q ss_pred Eeecccccc-----ccc-------ccch-HHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC--
Q 013706 236 EVQRTDLVG-----EFV-------GHTG-PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-- 300 (438)
Q Consensus 236 ~~~~~~~~~-----~~~-------g~~~-~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-- 300 (438)
.++++.+.. .++ |... ..+...+..+.++||||||+|.+.+ .+++.|++.|+++
T Consensus 80 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~le~~~~ 148 (311)
T 4fcw_A 80 RIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP-----------DVFNILLQMLDDGRL 148 (311)
T ss_dssp EEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH-----------HHHHHHHHHHHHSEE
T ss_pred EeecccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH-----------HHHHHHHHHHhcCEE
Confidence 888775432 233 2221 3566677778889999999999976 4558888888652
Q ss_pred -----------CEEEEEecCCh---------------hHHHHh------hhCcCccCCCCcceeCCCCCHHHHHHHHHHH
Q 013706 301 -----------KVVVIFAGYSE---------------PMKRVI------ASNEGFCRRVTKFFHFNDFNSEELAKILHIK 348 (438)
Q Consensus 301 -----------~v~vi~~~~~~---------------~~~~~~------~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~ 348 (438)
++++|++++.. .+...+ ..+|+|.+||+..+.|++|+.+++.+|++.+
T Consensus 149 ~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~ 228 (311)
T 4fcw_A 149 TDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQ 228 (311)
T ss_dssp ECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHH
T ss_pred EcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHH
Confidence 45688887762 111111 2378999999999999999999999999999
Q ss_pred HhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhcc
Q 013706 349 MNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLR 407 (438)
Q Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r 407 (438)
+.+....... ......++++++..+..+.| ..++|+|+++++++++...+..+
T Consensus 229 l~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~----~~~gn~R~L~~~i~~~~~~~~~~ 281 (311)
T 4fcw_A 229 MSYLRARLAE--KRISLELTEAAKDFLAERGY----DPVFGARPLRRVIQRELETPLAQ 281 (311)
T ss_dssp THHHHHHHHT--TTCEEEECHHHHHHHHHHSC----BTTTBTTTHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHh--CCcEEEeCHHHHHHHHHhCC----CccCCchhHHHHHHHHHHHHHHH
Confidence 9875432111 12235678899999998766 22699999999999998865533
No 62
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.87 E-value=1.9e-22 Score=175.62 Aligned_cols=125 Identities=27% Similarity=0.322 Sum_probs=117.5
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
..|+||||+|+..|+.+++++|++ .+++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 66 ~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 141 (192)
T 2rfm_A 66 IEGSTALIWAVKNNRLGIAEKLLS----KGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVA 141 (192)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHH
T ss_pred ccCccHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 369999999999999999999999 6889999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhcc
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS 135 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~ 135 (438)
+ ..++.+++++|+++|++++.+|..|.||+ +.|...++.+++++|+..+
T Consensus 142 ~----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l-~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 142 S----KYGRSEIVKKLLELGADISARDLTGLTAE-ASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp H----HHTCHHHHHHHHHTTCCTTCBCTTSCBHH-HHHHHTTCHHHHHHHHHHH
T ss_pred H----HcCCHHHHHHHHHCCCCCCCcCCCCCCHH-HHHHHhCcHHHHHHHHhcc
Confidence 9 88999999999999999999999999999 6666678899999998654
No 63
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.87 E-value=5.8e-22 Score=166.38 Aligned_cols=122 Identities=29% Similarity=0.384 Sum_probs=79.4
Q ss_pred CCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhh
Q 013706 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW 83 (438)
Q Consensus 4 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 83 (438)
|.||||+||..|+.++++.|++. .+.+++..|..|+||||+ +..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~- 76 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHR---ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAA- 76 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHT---TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-
T ss_pred cchHHHHHHHhCCHHHHHHHHHh---hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH-
Confidence 34666666666666666666663 234566666666666666 6666666666666666666666666666666666
Q ss_pred cccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhc
Q 013706 84 YSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134 (438)
Q Consensus 84 ~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~ 134 (438)
..|+.+++++|+++|++++..|..|+||| |.|+..++.+++++|+..
T Consensus 77 ---~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ 123 (156)
T 1bd8_A 77 ---RTGFLDTLKVLVEHGADVNVPDGTGALPI-HLAVQEGHTAVVSFLAAE 123 (156)
T ss_dssp ---HTTCHHHHHHHHHTTCCSCCCCTTSCCHH-HHHHHHTCHHHHHHHHTT
T ss_pred ---HcCcHHHHHHHHHcCCCCCCcCCCCCcHH-HHHHHhChHHHHHHHHhc
Confidence 56666666666666666666666666666 444445566666666654
No 64
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.86 E-value=4.4e-22 Score=182.79 Aligned_cols=120 Identities=32% Similarity=0.441 Sum_probs=110.0
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
..|.||+|+|+..++.+++++|++ .|+++|.+|..|+||||+|+..|+.+++++|+++|+++|.++..|+||||+|
T Consensus 117 ~~g~t~l~~a~~~~~~~~~~~Ll~----~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A 192 (269)
T 4b93_B 117 ADQAVPLHLACQQGHFQVVKCLLD----SNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEA 192 (269)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHH
T ss_pred CCCCCccccccccChHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHH
Confidence 478999999999999999999999 7899999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHH
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 132 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~ 132 (438)
+ ..|+.+++++|+++|++++.+|.+|+|||++ |+..+ .++++|.
T Consensus 193 ~----~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~-A~~~~--~i~~lL~ 236 (269)
T 4b93_B 193 V----IEKHVFVVELLLLHGASVQVLNKRQRTAVDC-AEQNS--KIMELLQ 236 (269)
T ss_dssp H----HTTCHHHHHHHHHTTCCSCCCCTTSCCSGGG-SCTTC--HHHHHTT
T ss_pred H----HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH-HHhCC--cHHHHHH
Confidence 9 8899999999999999999999999999954 54433 4555554
No 65
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.86 E-value=6.2e-22 Score=178.72 Aligned_cols=130 Identities=23% Similarity=0.238 Sum_probs=114.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
.|.||||+||..|+.++|++|++ .++++|..|..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+
T Consensus 36 ~~~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~ 111 (239)
T 1ycs_B 36 LPLALLLDSSLEGEFDLVQRIIY----EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAA 111 (239)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTS----TTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHH
T ss_pred hhhHHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence 46899999999999999999998 67899999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcHHHHHHHHhCCCCCcccCCCCC-ccccccc-cCCCchhHHHHHHhccchHHH
Q 013706 83 WYSIRSEDYATVKTLLEYNADCSAKDNEGK-TPLDHLS-NGPGSAKLRELLLWHSEEQRK 140 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~-t~l~~~a-~~~~~~~~~~lL~~~~~~~~~ 140 (438)
..|+.+++++|+++|++++..+..|. ||++.+. ...++.+++++|+..+++...
T Consensus 112 ----~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~ 167 (239)
T 1ycs_B 112 ----SCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGI 167 (239)
T ss_dssp ----HTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTT
T ss_pred ----HcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccc
Confidence 88999999999999999999998877 9994431 566788899999877765443
No 66
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.86 E-value=4.2e-22 Score=181.65 Aligned_cols=132 Identities=24% Similarity=0.289 Sum_probs=119.4
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCC-------------CChHHHHHHHcCCHHHHHHHHH---CCCC
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMY-------------GETPLHMAAKNGCNEAAKLLLA---HGAF 66 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~-------------g~t~L~~A~~~g~~~~v~~Ll~---~g~~ 66 (438)
.|+||||+||..|+.+++++|++ .|++++..|.. |+||||+|+..|+.+++++|++ +|++
T Consensus 89 ~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~ 164 (256)
T 2etb_A 89 QGHSALHIAIEKRSLQCVKLLVE----NGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS 164 (256)
T ss_dssp TTCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC
T ss_pred cCCCHHHHHHHcCCHHHHHHHHH----cCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC
Confidence 59999999999999999999999 68899998876 9999999999999999999999 9999
Q ss_pred cccccCCCCcHHHHHhhcccccCcHH-------HHHHHHhCCCCC-------cccCCCCCccccccccCCCchhHHHHHH
Q 013706 67 IEAKANNGMTPLHLSVWYSIRSEDYA-------TVKTLLEYNADC-------SAKDNEGKTPLDHLSNGPGSAKLRELLL 132 (438)
Q Consensus 67 ~~~~~~~g~t~L~~A~~~~~~~~~~~-------~~~~Ll~~ga~~-------~~~d~~g~t~l~~~a~~~~~~~~~~lL~ 132 (438)
+|.+|..|+||||+|+.. ..++.+ ++++|+++|+++ +.+|..|+||| +.|+..++.+++++|+
T Consensus 165 ~n~~d~~g~TpLh~A~~~--~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL-~~A~~~g~~~~v~~Ll 241 (256)
T 2etb_A 165 LEATDSLGNTVLHALVMI--ADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPL-KLAAKEGKIEIFRHIL 241 (256)
T ss_dssp TTCCCTTSCCHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHH-HHHHHTTCHHHHHHHH
T ss_pred cCccCCCCCCHHHHHHHc--ccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHH-HHHHHhCCHHHHHHHH
Confidence 999999999999999932 278888 999999999999 89999999999 6666678999999999
Q ss_pred hccchHHHH
Q 013706 133 WHSEEQRKR 141 (438)
Q Consensus 133 ~~~~~~~~~ 141 (438)
.++......
T Consensus 242 ~~g~~~~~~ 250 (256)
T 2etb_A 242 QREFSGAAA 250 (256)
T ss_dssp HHHHHHHHH
T ss_pred hCCCCCCCc
Confidence 887665443
No 67
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.86 E-value=2.9e-22 Score=178.72 Aligned_cols=131 Identities=18% Similarity=0.234 Sum_probs=111.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHC-CCCcccccCCCCcHHHHH
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAH-GAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A 81 (438)
.|+||||+||..|+.+++++|++ .+++++.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|+||||+|
T Consensus 72 ~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A 147 (222)
T 3ehr_A 72 SIDNPLHEAAKRGNLSWLRECLD----NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA 147 (222)
T ss_dssp EESCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHH
T ss_pred ccccccccccccCcHHHHHHHHh----CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHH
Confidence 57899999999999999999999 7889999999999999999999999999999998 999999999999999999
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHHH
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 142 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~~ 142 (438)
+ ..|+.+++++|+++|++++.+|..|.||+ ++|+..+..++++.|...++.....+
T Consensus 148 ~----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l-~~A~~~~~~~~l~~l~~~~~~~~~~~ 203 (222)
T 3ehr_A 148 A----WKGYADIVQLLLAKGARTDLRNIEKKLAF-DMATNAACASLLKKKQGTDAVRTLSN 203 (222)
T ss_dssp H----HHTCHHHHHHHHHHTCCSCCCCTTSCCHH-HHCCSHHHHHHHC-------------
T ss_pred H----HcCCHHHHHHHHHcCCCCccccCCCCCHH-HHhcchhHHHHHHHHhccchhhhccc
Confidence 9 88999999999999999999999999999 66666778888888887776655544
No 68
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.86 E-value=1.1e-21 Score=149.45 Aligned_cols=93 Identities=47% Similarity=0.656 Sum_probs=88.3
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
+|+||||+||..|+.+++++|++ .|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~ 76 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 76 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHH----cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence 58999999999999999999999 78999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcHHHHHHHHhCCCC
Q 013706 83 WYSIRSEDYATVKTLLEYNAD 103 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~ 103 (438)
..++.+++++|+++|++
T Consensus 77 ----~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 77 ----RNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp ----HTTCHHHHHHHHHTTCC
T ss_pred ----HcCCHHHHHHHHHcCCC
Confidence 88999999999999875
No 69
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.86 E-value=9.4e-22 Score=180.35 Aligned_cols=209 Identities=16% Similarity=0.167 Sum_probs=143.8
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|++++|.+...+.+.+.+..+ ...+.+++|+||||||||++|+++++.+.. ...+++.++
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~--------------~~~~~~vll~G~~GtGKt~la~~i~~~~~~----~~~~~~~v~ 64 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHL--------------APLDKPVLIIGERGTGKELIASRLHYLSSR----WQGPFISLN 64 (265)
T ss_dssp -------CCCHHHHHHHHHHHHH--------------TTSCSCEEEECCTTSCHHHHHHHHHHTSTT----TTSCEEEEE
T ss_pred cccccceeCCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCCcHHHHHHHHHHhcCc----cCCCeEEEe
Confidence 36888999998888877765543 224578999999999999999999986532 234899999
Q ss_pred cccccc-----cccccchHH-------HHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-------
Q 013706 239 RTDLVG-----EFVGHTGPK-------TRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------- 299 (438)
Q Consensus 239 ~~~~~~-----~~~g~~~~~-------~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------- 299 (438)
++.+.. .++|..... ....++.+.+++|||||+|.+.+. ++..|+..++.
T Consensus 65 ~~~~~~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~-----------~q~~Ll~~l~~~~~~~~g 133 (265)
T 2bjv_A 65 CAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMM-----------VQEKLLRVIEYGELERVG 133 (265)
T ss_dssp GGGSCHHHHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCHH-----------HHHHHHHHHHHCEECCCC
T ss_pred cCCCChhHHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCHH-----------HHHHHHHHHHhCCeecCC
Confidence 887532 234432111 123567788899999999999763 34677777764
Q ss_pred ------CCEEEEEecCChhHHHHh--hhCcCccCCCC-cceeCCCCCH--HHHHHHHHHHHhcccccccccccccccccc
Q 013706 300 ------GKVVVIFAGYSEPMKRVI--ASNEGFCRRVT-KFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCS 368 (438)
Q Consensus 300 ------~~v~vi~~~~~~~~~~~~--~~~p~l~~R~~-~~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~~~~~~~ 368 (438)
.++.+|++++.+....+. ...++|.+||. ..|.+|+++. +++..+++.++.+.... .+......++
T Consensus 134 ~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~---~~~~~~~~~~ 210 (265)
T 2bjv_A 134 GSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCRE---IKLPLFPGFT 210 (265)
T ss_dssp C--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHH---TTCSSCCCBC
T ss_pred CcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHH---hCCCcccCcC
Confidence 246788888776544321 12578888994 5788999875 78888888888765321 1222213678
Q ss_pred HHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhh
Q 013706 369 MDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLD 405 (438)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~ 405 (438)
++++..+..+.| +||.|+++++++++...+.
T Consensus 211 ~~a~~~L~~~~~------~gn~reL~~~l~~~~~~~~ 241 (265)
T 2bjv_A 211 ERARETLLNYRW------PGNIRELKNVVERSVYRHG 241 (265)
T ss_dssp HHHHHHHHHSCC------TTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCC------CCCHHHHHHHHHHHHHhCC
Confidence 999999998888 9999999999999886653
No 70
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.86 E-value=9e-22 Score=167.70 Aligned_cols=125 Identities=36% Similarity=0.464 Sum_probs=117.1
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
..|+||||+||..|+.+++++|++ .|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 45 ~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A 120 (169)
T 2y1l_E 45 ASGWTPLHLAAFNGHLEIVEVLLK----NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLA 120 (169)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 468999999999999999999999 6889999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhcc
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS 135 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~ 135 (438)
+ ..++.+++++|+++|++++..|..|.||+ +.|...++.+++++|++.|
T Consensus 121 ~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 121 A----MFGHLEIVEVLLKNGADVNAQDKFGKTAF-DISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp H----HTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHTC-
T ss_pred H----HcCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHhCCHHHHHHHHHcC
Confidence 9 88999999999999999999999999999 6666678899999998654
No 71
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.86 E-value=5.1e-22 Score=181.45 Aligned_cols=129 Identities=24% Similarity=0.294 Sum_probs=117.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccc--------------CCCChHHHHHHHcCCHHHHHHHHH---CCC
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN--------------MYGETPLHMAAKNGCNEAAKLLLA---HGA 65 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d--------------~~g~t~L~~A~~~g~~~~v~~Ll~---~g~ 65 (438)
.|+||||+||..|+.++|++|++ .|++++..+ ..|+||||+|+..|+.+++++|++ +|+
T Consensus 92 ~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga 167 (260)
T 3jxi_A 92 RGQTALHIAIERRCKHYVELLVE----KGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQA 167 (260)
T ss_dssp ESBCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh----CCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCC
Confidence 69999999999999999999999 688999998 689999999999999999999999 999
Q ss_pred CcccccCCCCcHHHHHhhcccccCc---------HHHHHHHHhCCCCC-------cccCCCCCccccccccCCCchhHHH
Q 013706 66 FIEAKANNGMTPLHLSVWYSIRSED---------YATVKTLLEYNADC-------SAKDNEGKTPLDHLSNGPGSAKLRE 129 (438)
Q Consensus 66 ~~~~~~~~g~t~L~~A~~~~~~~~~---------~~~~~~Ll~~ga~~-------~~~d~~g~t~l~~~a~~~~~~~~~~ 129 (438)
+++.+|..|+||||+|+ ..++ .+++++|+++|+++ +..|..|+||| +.|+..++.++++
T Consensus 168 ~~~~~d~~g~TpLh~A~----~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL-~~A~~~g~~~~v~ 242 (260)
T 3jxi_A 168 DLRRQDSRGNTVLHALV----AIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPL-MMAAKTGKIGIFQ 242 (260)
T ss_dssp CTTCCCTTSCCHHHHHH----HHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHH-HHHHHTTCHHHHH
T ss_pred CCcccCCCCCcHHHHHH----HhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHH-HHHHHcCCHHHHH
Confidence 99999999999999999 4444 68999999999999 67999999999 6666688999999
Q ss_pred HHHhccchHHH
Q 013706 130 LLLWHSEEQRK 140 (438)
Q Consensus 130 lL~~~~~~~~~ 140 (438)
+|+.++.....
T Consensus 243 ~Ll~~g~~~~~ 253 (260)
T 3jxi_A 243 HIIRREIADAA 253 (260)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHhCCCccc
Confidence 99988765443
No 72
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.86 E-value=3.6e-21 Score=181.82 Aligned_cols=187 Identities=19% Similarity=0.237 Sum_probs=140.1
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 239 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 239 (438)
.|++++|.+..++.+.+.+...... ...+.+++|+||||||||++|+++++.+.. +++.+++
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~-----------~~~~~~vll~G~~GtGKT~la~~i~~~~~~-------~~~~~~~ 71 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKAR-----------KEPLEHLLLFGPPGLGKTTLAHVIAHELGV-------NLRVTSG 71 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHH-----------CSCCCCCEEECCTTCCCHHHHHHHHHHHTC-------CEEEECT
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHcc-----------CCCCCcEEEECCCCCCHHHHHHHHHHHhCC-------CEEEEec
Confidence 5789999999999988876544211 135678999999999999999999998854 7777776
Q ss_pred ccccccccccchHHHHHHHHH--ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-----------------
Q 013706 240 TDLVGEFVGHTGPKTRRRIKE--AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG----------------- 300 (438)
Q Consensus 240 ~~~~~~~~g~~~~~~~~~~~~--a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~----------------- 300 (438)
+.+.. ...+...|.. +.+++|||||+|.+.+.. .+.|+..+++.
T Consensus 72 ~~~~~------~~~l~~~l~~~~~~~~~l~lDEi~~l~~~~-----------~~~L~~~l~~~~~~~v~~~~~~~~~~~~ 134 (324)
T 1hqc_A 72 PAIEK------PGDLAAILANSLEEGDILFIDEIHRLSRQA-----------EEHLYPAMEDFVMDIVIGQGPAARTIRL 134 (324)
T ss_dssp TTCCS------HHHHHHHHTTTCCTTCEEEETTTTSCCHHH-----------HHHHHHHHHHSEEEECCSSSSSCCCEEE
T ss_pred cccCC------hHHHHHHHHHhccCCCEEEEECCcccccch-----------HHHHHHHHHhhhhHHhcccccccccccc
Confidence 65422 2344555655 567999999999997533 35666666542
Q ss_pred ---CEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHH
Q 013706 301 ---KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE 377 (438)
Q Consensus 301 ---~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (438)
.+++|++++.... .+++|++||+.++.|++|+.+++.+++..++.+.. ..++++++..+..
T Consensus 135 ~~~~~~~i~~t~~~~~-----~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~-----------~~~~~~~~~~l~~ 198 (324)
T 1hqc_A 135 ELPRFTLIGATTRPGL-----ITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG-----------VRITEEAALEIGR 198 (324)
T ss_dssp ECCCCEEEEEESCCSS-----CSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTT-----------CCCCHHHHHHHHH
T ss_pred CCCCEEEEEeCCCccc-----CCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHHH
Confidence 3677887766543 27899999988999999999999999999887642 2367778877777
Q ss_pred HHhhHhhhccccccchHHHHHHHHHHh
Q 013706 378 KETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 378 ~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
++ +||.|.+.++++.+...+
T Consensus 199 ~~-------~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 199 RS-------RGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp HS-------CSCHHHHHHHHHHHTTTS
T ss_pred Hc-------cCCHHHHHHHHHHHHHHH
Confidence 63 788999999988876544
No 73
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.86 E-value=3.8e-21 Score=173.04 Aligned_cols=132 Identities=30% Similarity=0.344 Sum_probs=98.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCC--CcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccC-CCCcHHH
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGND--KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN-NGMTPLH 79 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~g~t~L~ 79 (438)
.|+||||+||..|+.+++++|++++... ...++..+..|+||||+|+..|+.+++++|+++|++++.++. .|.||||
T Consensus 77 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~ 156 (236)
T 1ikn_D 77 RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALH 156 (236)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHH
Confidence 5677777777777777777777732110 122566677788888888888888888888888888888876 7888888
Q ss_pred HHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHH
Q 013706 80 LSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 139 (438)
Q Consensus 80 ~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~ 139 (438)
+|+ ..++.+++++|+++|++++.+|..|+||+ +.|...++.+++++|+..+++..
T Consensus 157 ~A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl-~~A~~~~~~~~~~~Ll~~ga~~~ 211 (236)
T 1ikn_D 157 LAV----DLQNPDLVSLLLKCGADVNRVTYQGYSPY-QLTWGRPSTRIQQQLGQLTLENL 211 (236)
T ss_dssp HHH----HTTCHHHHHHHHTTTCCSCCCCTTCCCGG-GGCTTSSCHHHHHHHHTTSCGGG
T ss_pred HHH----HcCCHHHHHHHHHcCCCCCcccCCCCCHH-HHHHccCchHHHHHHHHcchhhh
Confidence 888 67788888888888888888888888888 55556777788888887776543
No 74
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.86 E-value=1.6e-21 Score=165.36 Aligned_cols=131 Identities=30% Similarity=0.349 Sum_probs=120.3
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
.|.||||.|+..|+.++++.|++. .+.+++..+..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 7 ~~~~~l~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 7 EADRQLLEAAKAGDVETVKKLCTV---QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC 83 (165)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCT---TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred hhhHHHHHHHHhCCHHHHHHHHHc---CCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence 578999999999999999999985 56778888899999999999999999999999999999999999999999999
Q ss_pred hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706 83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 141 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~ 141 (438)
..++.+++++|+++|++++..|..|+||| +.|+..++.+++++|+..+++...+
T Consensus 84 ----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~~ 137 (165)
T 3twr_A 84 ----SYGHYEVAELLVKHGAVVNVADLWKFTPL-HEAAAKGKYEICKLLLQHGADPTKK 137 (165)
T ss_dssp ----HTTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred ----HcCcHHHHHHHHhCCCCCCCcCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCccc
Confidence 88999999999999999999999999999 6666678999999999888765443
No 75
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.86 E-value=9e-22 Score=166.27 Aligned_cols=126 Identities=23% Similarity=0.315 Sum_probs=116.9
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
..|+||||+|+. |+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 36 ~~g~t~L~~A~~-~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 110 (162)
T 1ihb_A 36 GFGRTALQVMKL-GNPEIARRLLL----RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLA 110 (162)
T ss_dssp TTSCCHHHHCCS-SCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred ccCccHHHHHHc-CcHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence 368999999999 99999999999 6889999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCcHHHHHHHHhCCCC-CcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706 82 VWYSIRSEDYATVKTLLEYNAD-CSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~-~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~ 137 (438)
+ ..++.+++++|+++|++ ++..|..|+||+ +.|+..++.+++++|+.+|++
T Consensus 111 ~----~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l-~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 111 A----KEGHLRVVEFLVKHTASNVGHRNHKGDTAC-DLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp H----HTTCHHHHHHHHHHSCCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTC--
T ss_pred H----HcCCHHHHHHHHHccCCCCCCcCCCCCcHH-HHHHHcCCHHHHHHHHHhCCC
Confidence 9 88999999999999998 589999999999 666678899999999988764
No 76
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.86 E-value=1.8e-21 Score=166.15 Aligned_cols=131 Identities=24% Similarity=0.200 Sum_probs=116.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
++.||||.|+..|+.++++.|++. ....++..|..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus 1 G~~~~L~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 77 (172)
T 3v30_A 1 GDSLSIHQLAAQGELDQLKEHLRK---GDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLAS 77 (172)
T ss_dssp ---CCHHHHHHTTCHHHHHHHHTT---CSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHH
T ss_pred CchhhHHHHHHcCCHHHHHHHHHc---CcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHH
Confidence 367999999999999999999983 23348999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706 83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 141 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~ 141 (438)
..++.+++++|+++|++++..|..|+||| |.|+..++.+++++|+..+++....
T Consensus 78 ----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~~ 131 (172)
T 3v30_A 78 ----TGGYTDIVGLLLERDVDINIYDWNGGTPL-LYAVRGNHVKCVEALLARGADLTTE 131 (172)
T ss_dssp ----HTTCHHHHHHHHTTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred ----HCCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCcccc
Confidence 88999999999999999999999999999 5566678899999999888765443
No 77
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.86 E-value=2.1e-21 Score=167.05 Aligned_cols=131 Identities=25% Similarity=0.327 Sum_probs=118.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
.+.+|||.||..|+.++|++|++. .+.+++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 80 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDN---TENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAA 80 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHC---TTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhc---CcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence 578999999999999999999994 47789999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706 83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 141 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~ 141 (438)
..++.+++++|+++|++++..|..|+||| +.|+..++.+++++|+..+++....
T Consensus 81 ----~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~~ 134 (179)
T 3f6q_A 81 ----SHGHRDIVQKLLQYKADINAVNEHGNVPL-HYACFWGQDQVAEDLVANGALVSIC 134 (179)
T ss_dssp ----HTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCSSBC
T ss_pred ----HcCCHHHHHHHHHcCCCCCccCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCcchh
Confidence 88999999999999999999999999999 6666678899999999888775443
No 78
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.86 E-value=4.1e-22 Score=185.71 Aligned_cols=204 Identities=20% Similarity=0.228 Sum_probs=149.2
Q ss_pred hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706 162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 241 (438)
Q Consensus 162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 241 (438)
++++|.+...+.+.+.+..+ +..+.++||+||||||||++|+++++.+. ....+|+.++++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~--------------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~----~~~~~~v~v~~~~ 63 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMV--------------APSDATVLIHGDSGTGKELVARALHACSA----RSDRPLVTLNCAA 63 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHH--------------CSTTSCEEEESCTTSCHHHHHHHHHHHSS----CSSSCCCEEECSS
T ss_pred CCcEECCHHHHHHHHHHHHH--------------hCCCCcEEEECCCCchHHHHHHHHHHhCc----ccCCCeEEEeCCC
Confidence 35788888888887776544 24567899999999999999999998553 2345888898876
Q ss_pred ccc-----cccccch-------HHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC---------
Q 013706 242 LVG-----EFVGHTG-------PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--------- 300 (438)
Q Consensus 242 ~~~-----~~~g~~~-------~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~--------- 300 (438)
+.. .++|+.. ......|+.+.+++|||||||.+.+. .+..|+..++++
T Consensus 64 ~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~-----------~q~~Ll~~l~~~~~~~~g~~~ 132 (304)
T 1ojl_A 64 LNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPL-----------MQVRLLRAIQEREVQRVGSNQ 132 (304)
T ss_dssp CCHHHHHHHHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCHH-----------HHHHHHHHHHSSBCCBTTBCC
T ss_pred CChHHHHHHhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCHH-----------HHHHHHHHHhcCEeeecCCcc
Confidence 533 3444421 12335678889999999999999763 447788888754
Q ss_pred ----CEEEEEecCChhHHHHhh--hCcCccCCC-CcceeCCCCC--HHHHHHHHHHHHhccccccccccccccccccHHH
Q 013706 301 ----KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFN--SEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDA 371 (438)
Q Consensus 301 ----~v~vi~~~~~~~~~~~~~--~~p~l~~R~-~~~i~~~~~~--~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~ 371 (438)
++.+|++|+.+....+.. -++.|..|| ...|.+|++. .+++..++..++.+.... ++. -...+++++
T Consensus 133 ~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~---~~~-~~~~~s~~a 208 (304)
T 1ojl_A 133 TISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAER---NRK-VVKGFTPQA 208 (304)
T ss_dssp CCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHH---TTC-CCCCBCHHH
T ss_pred cccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHH---hcc-CccCCCHHH
Confidence 378888888764433311 246777888 5568899998 688999999888765321 111 124578899
Q ss_pred HHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 372 IAALIEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 372 ~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
+..+..+.| +||.|+++++++++...+
T Consensus 209 ~~~L~~~~w------pGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 209 MDLLIHYDW------PGNIRELENAIERAVVLL 235 (304)
T ss_dssp HHHHHHCCC------SSHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCC------CCCHHHHHHHHHHHHHhC
Confidence 999999988 999999999999998765
No 79
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.85 E-value=4.6e-22 Score=171.84 Aligned_cols=108 Identities=27% Similarity=0.395 Sum_probs=101.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCccccc-CCCCcHHHHH
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA-NNGMTPLHLS 81 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A 81 (438)
.|+||||+||..|+.++++.|++ +.+++..|..|+||||+|+..|+.+++++|+++|++++.++ ..|+||||+|
T Consensus 43 ~g~t~L~~A~~~g~~~~v~~Ll~-----~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A 117 (183)
T 3deo_A 43 EYETPWWTAARKADEQALSQLLE-----DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 117 (183)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTT-----TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh-----cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence 47899999999999999999997 56899999999999999999999999999999999999998 8999999999
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccc
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS 119 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a 119 (438)
+ ..++.+++++|+++|++++.+|..|+||+++++
T Consensus 118 ~----~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~ 151 (183)
T 3deo_A 118 A----GYVRPEVVEALVELGADIEVEDERGLTALELAR 151 (183)
T ss_dssp H----HTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHH
T ss_pred H----hcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHH
Confidence 9 889999999999999999999999999994443
No 80
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.85 E-value=1.7e-21 Score=163.07 Aligned_cols=128 Identities=26% Similarity=0.345 Sum_probs=116.6
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
++.||||.|+..|+.+++++|++ .+.+++ .|..|+||||+|+..|+.+++++|+++|++++.++..|+||||+|+
T Consensus 1 d~~~~L~~A~~~g~~~~v~~Ll~----~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 75 (153)
T 1awc_B 1 DLGKKLLEAARAGQDDEVRILMA----NGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAA 75 (153)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHH----HTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHH
T ss_pred CccHHHHHHHHcCCHHHHHHHHH----cCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 35689999999999999999999 566666 5888999999999999999999999999999999999999999999
Q ss_pred hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706 83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK 140 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~ 140 (438)
..++.+++++|+++|++++..|..|+||| +.|+..++.+++++|+..+++...
T Consensus 76 ----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~ 128 (153)
T 1awc_B 76 ----SEGHANIVEVLLKHGADVNAKDMLKMTAL-HWATEHNHQEVVELLIKYGADVHT 128 (153)
T ss_dssp ----HHTCHHHHHHHHTTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred ----HcChHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCccc
Confidence 88999999999999999999999999999 666667889999999988876543
No 81
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.85 E-value=3.8e-21 Score=171.33 Aligned_cols=131 Identities=25% Similarity=0.345 Sum_probs=109.0
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
..|+||||+|+..|+.+++++|+++ ...+++..+..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 56 ~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A 132 (223)
T 2f8y_A 56 NMGRTPLHAAVSADAQGVFQILIRN---RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWA 132 (223)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHB---TTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHH
Confidence 3688899999999999999999883 2337888888888999999998889999999998888888888889999988
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK 140 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~ 140 (438)
+ ..++.+++++|+++|++++..|..|.||| +.|+..++.+++++|+..+++...
T Consensus 133 ~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~ 186 (223)
T 2f8y_A 133 A----AVNNVDAAVVLLKNGANKDMQNNREETPL-FLAAREGSYETAKVLLDHFANRDI 186 (223)
T ss_dssp H----HTTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred H----HcCCHHHHHHHHHcCCCCCCcCCCCcCHH-HHHHHcCCHHHHHHHHHcCCCCcc
Confidence 8 77888888888888888888888899998 555567788888888887766543
No 82
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.85 E-value=4.2e-21 Score=201.22 Aligned_cols=215 Identities=17% Similarity=0.285 Sum_probs=155.0
Q ss_pred hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706 162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 241 (438)
Q Consensus 162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 241 (438)
+.++|++.+++.+.+.+.... .+......+..++||+||||||||++|+++|+.+... ..+++.+++++
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~-------~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~----~~~~i~i~~s~ 559 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRAR-------AGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD----EESMIRIDMSE 559 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHT-------TTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC----TTCEEEEEGGG
T ss_pred CcCcChHHHHHHHHHHHHHHH-------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC----CcceEEEechh
Confidence 468899988888887655332 2222222233379999999999999999999988532 34899999999
Q ss_pred ccccccccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-------------CEEEEEec
Q 013706 242 LVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------------KVVVIFAG 308 (438)
Q Consensus 242 ~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------------~v~vi~~~ 308 (438)
+...+... ...+...+....++||||||||++.+ .+++.|++.|+++ ++++|+++
T Consensus 560 ~~~~~~~~-~~~l~~~~~~~~~~vl~lDEi~~~~~-----------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~tt 627 (758)
T 3pxi_A 560 YMEKHSTS-GGQLTEKVRRKPYSVVLLDAIEKAHP-----------DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTS 627 (758)
T ss_dssp GCSSCCCC----CHHHHHHCSSSEEEEECGGGSCH-----------HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEE
T ss_pred cccccccc-cchhhHHHHhCCCeEEEEeCccccCH-----------HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeC
Confidence 88776654 33445667777889999999999876 5668899988763 35778887
Q ss_pred CC-----hhHHHHh--hhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHH--HH
Q 013706 309 YS-----EPMKRVI--ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIE--KE 379 (438)
Q Consensus 309 ~~-----~~~~~~~--~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 379 (438)
+. +.....+ ...|+|++||+.+|.|++|+.+++.+|+..++.+...+.... .....++++++..++. +.
T Consensus 628 n~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~--~~~~~~~~~a~~~l~~~~~~ 705 (758)
T 3pxi_A 628 NVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQ--DLSIELTDAAKAKVAEEGVD 705 (758)
T ss_dssp SSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTT--TCEEEECHHHHHHHHGGGCC
T ss_pred CCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhC--CCeEEECHHHHHHHHHhCCC
Confidence 63 2221110 127999999999999999999999999999988764332211 2335678899999976 44
Q ss_pred hhHhhhccccccchHHHHHHHHHHhhcc
Q 013706 380 TTEKQRREMNGGLVDPMLVNARENLDLR 407 (438)
Q Consensus 380 ~~~~~~~~~n~~~l~~~~~~a~~~~~~r 407 (438)
| ++|+|.|++++++++.....+
T Consensus 706 ~------~~~~R~L~~~i~~~v~~~l~~ 727 (758)
T 3pxi_A 706 L------EYGARPLRRAIQKHVEDRLSE 727 (758)
T ss_dssp T------TTTTTTHHHHHHHHTHHHHHH
T ss_pred C------CCCChHHHHHHHHHHHHHHHH
Confidence 5 899999999999988765443
No 83
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.85 E-value=3.1e-21 Score=173.02 Aligned_cols=128 Identities=32% Similarity=0.397 Sum_probs=106.5
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccc-----ccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccC----
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVEL-----EAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKAN---- 72 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~-----~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~---- 72 (438)
..|+||||+||..|+.+++++|++ .++++ +..|..|+||||+|+..|+.+++++|+++|++++..+.
T Consensus 35 ~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~ 110 (232)
T 2rfa_A 35 AMGETALHIAALYDNLEAAMVLME----AAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVF 110 (232)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHH----HCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGG
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHH----cCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcce
Confidence 468999999999999999999998 45555 66778899999999999999999999999999888765
Q ss_pred ---------CCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHH----HHHHhccchH
Q 013706 73 ---------NGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLR----ELLLWHSEEQ 138 (438)
Q Consensus 73 ---------~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~----~lL~~~~~~~ 138 (438)
.|.||||+|+ ..|+.+++++|+++|++++.+|..|+||| |.|+..++.+++ ++|+..+++.
T Consensus 111 ~~~~~~~~~~g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L-~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 111 HYRPHNLIYYGEHPLSFAA----CVGSEEIVRLLIEHGADIRAQDSLGNTVL-HILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp SCCTTCSCCCCSSHHHHHH----HHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred eecccccccCCCCHHHHHH----HcCCHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHcCChHHHHHHHHHHHhcCCch
Confidence 6899999998 78889999999999999999999999999 545556666665 7887776643
No 84
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.85 E-value=1.2e-21 Score=180.44 Aligned_cols=125 Identities=28% Similarity=0.363 Sum_probs=115.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccC--------------CCChHHHHHHHcCCHHHHHHHHH---CCC
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM--------------YGETPLHMAAKNGCNEAAKLLLA---HGA 65 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~--------------~g~t~L~~A~~~g~~~~v~~Ll~---~g~ 65 (438)
.|+||||+||..|+.++|++|++ .|++++..+. .|+||||+|+..|+.+++++|++ +|+
T Consensus 100 ~g~tpL~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga 175 (273)
T 2pnn_A 100 KGQTALHIAIERRNMTLVTLLVE----NGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPA 175 (273)
T ss_dssp TTCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH----CCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCC
Confidence 69999999999999999999999 6889999887 79999999999999999999999 999
Q ss_pred CcccccCCCCcHHHHHhhcccccCc---------HHHHHHHHhCCCCCc-------ccCCCCCccccccccCCCchhHHH
Q 013706 66 FIEAKANNGMTPLHLSVWYSIRSED---------YATVKTLLEYNADCS-------AKDNEGKTPLDHLSNGPGSAKLRE 129 (438)
Q Consensus 66 ~~~~~~~~g~t~L~~A~~~~~~~~~---------~~~~~~Ll~~ga~~~-------~~d~~g~t~l~~~a~~~~~~~~~~ 129 (438)
+++.+|..|+||||+|+ ..++ .+++++|+++|++++ ..|..|+||| +.|+..++.++++
T Consensus 176 d~~~~d~~g~tpLh~A~----~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL-~~A~~~g~~~iv~ 250 (273)
T 2pnn_A 176 DISARDSVGNTVLHALV----EVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPL-ALAASSGKIGVLA 250 (273)
T ss_dssp CTTCCCTTSCCHHHHHH----HHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHH-HHHHHTTCHHHHH
T ss_pred CceeeCCCCCcHHHHHH----HccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHH-HHHHHhChHHHHH
Confidence 99999999999999999 5565 789999999999996 5899999999 6666688999999
Q ss_pred HHHhccc
Q 013706 130 LLLWHSE 136 (438)
Q Consensus 130 lL~~~~~ 136 (438)
+|+..|+
T Consensus 251 ~Ll~~ga 257 (273)
T 2pnn_A 251 YILQREI 257 (273)
T ss_dssp HHHHHHT
T ss_pred HHHHCCC
Confidence 9998887
No 85
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.85 E-value=4.6e-21 Score=171.94 Aligned_cols=130 Identities=29% Similarity=0.443 Sum_probs=118.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCc-----ccccCCCCcH
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFI-----EAKANNGMTP 77 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----~~~~~~g~t~ 77 (438)
.|+||||+||..|+.+++++|++. .+++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~---~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~ 78 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKF---EGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTA 78 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTT---TCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCH
Confidence 589999999999999999999983 48999999999999999999999999999999999987 6778899999
Q ss_pred HHHHhhcccccCcHHHHHHHHhCCCCCcccCC-------------CCCccccccccCCCchhHHHHHHhccchHHH
Q 013706 78 LHLSVWYSIRSEDYATVKTLLEYNADCSAKDN-------------EGKTPLDHLSNGPGSAKLRELLLWHSEEQRK 140 (438)
Q Consensus 78 L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~-------------~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~ 140 (438)
||+|+ ..|+.+++++|+++|++++..+. .|+||| |.|+..++.+++++|+..+++...
T Consensus 79 L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~ 149 (232)
T 2rfa_A 79 LHIAV----INQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPL-SFAACVGSEEIVRLLIEHGADIRA 149 (232)
T ss_dssp HHHHH----HTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHH-HHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred HHHHH----HcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHH-HHHHHcCCHHHHHHHHHCCCCCCC
Confidence 99999 88999999999999999998866 799999 666667889999999988876543
No 86
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.85 E-value=3.3e-21 Score=175.47 Aligned_cols=132 Identities=25% Similarity=0.342 Sum_probs=113.1
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
..|+||||+|+..|+.+++++|+++ ...+++..+..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus 88 ~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A 164 (253)
T 1yyh_A 88 NMGRTPLHAAVSADAQGVFQILIRN---RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWA 164 (253)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHS---TTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHc---CCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence 3688999999999999999999983 2337888888999999999999999999999999999999999999999999
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 141 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~ 141 (438)
+ ..|+.+++++|+++|++++..|..|+||| +.|+..++.+++++|+..+++...+
T Consensus 165 ~----~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL-~~A~~~~~~~~v~~Ll~~ga~~~~~ 219 (253)
T 1yyh_A 165 A----AVNNVDAAVVLLKNGANKDMQNNREETPL-FLAAREGSYETAKVLLDHFANRDIT 219 (253)
T ss_dssp H----HHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred H----HcCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHCCCHHHHHHHHHcCCCcccc
Confidence 8 77889999999999999999999999999 5566677888899998888765443
No 87
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.84 E-value=8.1e-21 Score=169.73 Aligned_cols=126 Identities=25% Similarity=0.342 Sum_probs=74.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCC--cccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHH
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDK--VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHL 80 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 80 (438)
.|+||||+|+..|+.+++++|++ .+ .+++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus 71 ~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~ 146 (228)
T 2dzn_A 71 SGWTPFHIACSVGNLEVVKSLYD----RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHR 146 (228)
T ss_dssp TSCCHHHHHHHHCCHHHHHHHHS----SSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh----CCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHH
Confidence 45566666666666666666665 33 5555556666666666666666666666666666666666666666666
Q ss_pred HhhcccccCcHHHHHHHHhCC-CCCcccCCCCCccccccccCCCchhHHHHHH-hccch
Q 013706 81 SVWYSIRSEDYATVKTLLEYN-ADCSAKDNEGKTPLDHLSNGPGSAKLRELLL-WHSEE 137 (438)
Q Consensus 81 A~~~~~~~~~~~~~~~Ll~~g-a~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~-~~~~~ 137 (438)
|+ ..|+.+++++|++.| ++++..|..|+||| +.|+..++.+++++|+ ..+++
T Consensus 147 A~----~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L-~~A~~~~~~~~v~~Ll~~~ga~ 200 (228)
T 2dzn_A 147 AA----SVGSLKLIELLCGLGKSAVNWQDKQGWTPL-FHALAEGHGDAAVLLVEKYGAE 200 (228)
T ss_dssp HH----HTTCHHHHHHHHTTTCCCSCCCCTTSCCHH-HHHHHTTCHHHHHHHHHHHCCC
T ss_pred HH----HcCCHHHHHHHHhcCcccccCcCCCCCCHH-HHHHHcCCHHHHHHHHHhcCCC
Confidence 66 555666666666665 66666666666666 3333445555555555 44544
No 88
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.84 E-value=5.7e-21 Score=176.33 Aligned_cols=134 Identities=30% Similarity=0.349 Sum_probs=116.3
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCC-------------------------------------------CCcccccccC
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGN-------------------------------------------DKVELEAQNM 39 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~-------------------------------------------~~~~~~~~d~ 39 (438)
.|+||||+|+..|+.+++++|++++.. .+.+++..|.
T Consensus 77 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (282)
T 1oy3_D 77 GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY 156 (282)
T ss_dssp TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCT
T ss_pred CCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCC
Confidence 578888888888888888888874321 1234778899
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCcccccCC-CCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCcccccc
Q 013706 40 YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANN-GMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHL 118 (438)
Q Consensus 40 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~ 118 (438)
.|+||||+|+..|+.+++++|+++|++++.++.. |+||||+|+ ..|+.+++++|+++|++++.+|..|+||| +.
T Consensus 157 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~----~~~~~~~v~~Ll~~gad~~~~d~~g~tpL-~~ 231 (282)
T 1oy3_D 157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV----EAQAASVLELLLKAGADPTARMYGGRTPL-GS 231 (282)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HH
T ss_pred CCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHH----HcCCHHHHHHHHHcCCCCcccccCCCCHH-HH
Confidence 9999999999999999999999999999999854 999999999 88999999999999999999999999999 66
Q ss_pred ccCCCchhHHHHHHhccchHHHH
Q 013706 119 SNGPGSAKLRELLLWHSEEQRKR 141 (438)
Q Consensus 119 a~~~~~~~~~~lL~~~~~~~~~~ 141 (438)
|+..++.+++++|+.+|++...+
T Consensus 232 A~~~~~~~~v~~Ll~~ga~~~~~ 254 (282)
T 1oy3_D 232 ALLRPNPILARLLRAHGAPEPED 254 (282)
T ss_dssp HHTSSCHHHHHHHHHTTCCCCCC
T ss_pred HHHcCCcHHHHHHHHcCCCcCcC
Confidence 66678999999999998875543
No 89
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.84 E-value=5.5e-21 Score=171.22 Aligned_cols=130 Identities=33% Similarity=0.431 Sum_probs=120.1
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
..|+||||+|+..|+.+++++|++ .+++++..|..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|
T Consensus 71 ~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A 146 (231)
T 3aji_A 71 DAGWSPLHIAASAGXDEIVKALLV----KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRA 146 (231)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCCCCHHHHHHHcCHHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence 368999999999999999999999 6889999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK 140 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~ 140 (438)
+ ..|+.+++++|+++|++++..|..|+||| +.|+..++.+++++|+..+++...
T Consensus 147 ~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~ 200 (231)
T 3aji_A 147 A----AKGNLKMVHILLFYKASTNIQDTEGNTPL-HLACDEERVEEAKFLVTQGASIYI 200 (231)
T ss_dssp H----HHTCHHHHHHHHHTTCCSCCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred H----HcCCHHHHHHHHhcCCCccccCCCCCCHH-HHHHHCCCHHHHHHHHHCCCCCCC
Confidence 9 88999999999999999999999999999 666667889999999988876543
No 90
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.84 E-value=7.7e-21 Score=170.27 Aligned_cols=129 Identities=33% Similarity=0.453 Sum_probs=120.0
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
..|+||||+||..|+.+++++|++ .|++++..|..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|
T Consensus 38 ~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 113 (231)
T 3aji_A 38 QDSRTALHWACSAGHTEIVEFLLQ----LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYA 113 (231)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHH----hCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 479999999999999999999999 6889999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHH
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 139 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~ 139 (438)
+ ..++.+++++|+++|++++..|..|.||| +.|+..++.+++++|+..+.+..
T Consensus 114 ~----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~ 166 (231)
T 3aji_A 114 A----SKNRHEIAVMLLEGGANPDAKDHYDATAM-HRAAAKGNLKMVHILLFYKASTN 166 (231)
T ss_dssp H----HTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHHHTTCCSC
T ss_pred H----HcCCHHHHHHHHHcCCCCCCcCCCCCcHH-HHHHHcCCHHHHHHHHhcCCCcc
Confidence 9 88999999999999999999999999999 55656788899999998876543
No 91
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.84 E-value=4.5e-21 Score=184.19 Aligned_cols=130 Identities=25% Similarity=0.253 Sum_probs=122.0
Q ss_pred CCCcHHHHHHHcC--CHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCC-----cccccCCCC
Q 013706 3 MAQTPLHVSAGYN--KAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF-----IEAKANNGM 75 (438)
Q Consensus 3 ~g~tpLh~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-----~~~~~~~g~ 75 (438)
.|+||||+|+..| +.++|++|++ .|++++..|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+
T Consensus 137 ~g~t~L~~A~~~g~~~~~~v~~Ll~----~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~ 212 (364)
T 3ljn_A 137 KGQTALHWCVGLGPEYLEMIKILVQ----LGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN 212 (364)
T ss_dssp SCCCHHHHHHHSCGGGHHHHHHHHH----HTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCC
T ss_pred CCCCHHHHHHHcCCchHHHHHHHHH----cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCC
Confidence 5899999999999 9999999999 6899999999999999999999999999999999999 999999999
Q ss_pred cHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706 76 TPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 141 (438)
Q Consensus 76 t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~ 141 (438)
||||+|+ ..|+.+++++|+++|++++..|..|+||| +.|+..++.+++++|+..++.....
T Consensus 213 t~L~~A~----~~g~~~~v~~Ll~~gad~~~~d~~g~tpL-~~A~~~g~~~~v~~Ll~~~~~~~~~ 273 (364)
T 3ljn_A 213 SHLHWAI----LINWEDVAMRFVEMGIDVNMEDNEHTVPL-YLSVRAAMVLLTKELLQKTDVFLIQ 273 (364)
T ss_dssp CTTHHHH----TTTCHHHHHHHHTTTCCTTCCCTTSCCHH-HHHHHTCCHHHHHHHHHHSCHHHHH
T ss_pred cHHHHHH----HcCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHhChHHHHHHHHHcCCchhhh
Confidence 9999999 88999999999999999999999999999 6666688999999999988776443
No 92
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.84 E-value=5.4e-21 Score=167.47 Aligned_cols=131 Identities=22% Similarity=0.289 Sum_probs=118.0
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHH-HCCCCcccccCCCCcHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLL-AHGAFIEAKANNGMTPLHL 80 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~ 80 (438)
..|+||||+||..|+.+++++|++ .|++++..|..|+||||+|+..|+.+++++|+ ..+++++..+..|.||||+
T Consensus 37 ~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~ 112 (201)
T 3hra_A 37 TEGNTPLNIAVHNNDIEIAKALID----RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIP 112 (201)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHH
Confidence 478999999999999999999999 78999999999999999999999999999999 6778999999999999999
Q ss_pred HhhcccccCcHHHHHHHHhCC-CCCcccCCCCCccccccccCCCc-----hhHHHHHHhccchHHHH
Q 013706 81 SVWYSIRSEDYATVKTLLEYN-ADCSAKDNEGKTPLDHLSNGPGS-----AKLRELLLWHSEEQRKR 141 (438)
Q Consensus 81 A~~~~~~~~~~~~~~~Ll~~g-a~~~~~d~~g~t~l~~~a~~~~~-----~~~~~lL~~~~~~~~~~ 141 (438)
|+ ..++.+++++|+++| ++++..|..|+||||+++. .+. .+++++|+..+++...+
T Consensus 113 A~----~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~-~~~~~~~~~~~v~~Ll~~ga~~~~~ 174 (201)
T 3hra_A 113 AA----EKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVG-LREGNQLYQDIVKLLMENGADQSIK 174 (201)
T ss_dssp HH----HTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHH-SSCCSHHHHHHHHHHHHTTCCTTCC
T ss_pred HH----HcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHH-hccchhhHHHHHHHHHHCCCCCCcc
Confidence 99 889999999999998 9999999999999955554 444 78999999888776544
No 93
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.84 E-value=7.6e-21 Score=175.38 Aligned_cols=123 Identities=28% Similarity=0.380 Sum_probs=73.2
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCc-ccccccCCCChHHHHHH-----HcCCHHHHHHHHHCCCCcccccCCCC
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKV-ELEAQNMYGETPLHMAA-----KNGCNEAAKLLLAHGAFIEAKANNGM 75 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~-~~~~~d~~g~t~L~~A~-----~~g~~~~v~~Ll~~g~~~~~~~~~g~ 75 (438)
..|+||||+||..|+.++|++|++ .|+ +++..|..|+||||+|+ ..++.+++++|++.|.+++..+..|+
T Consensus 109 ~~g~T~Lh~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 184 (276)
T 4hbd_A 109 SNGNTALHYSVSHANFPVVQQLLD----SGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQ 184 (276)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHH----TSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCC
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHH----CCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCC
Confidence 479999999999999999999999 454 56666655555555555 33445555555555555555555555
Q ss_pred cHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHh
Q 013706 76 TPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLW 133 (438)
Q Consensus 76 t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~ 133 (438)
||||+|+ ..|+.+++++|+++|++++..|.+|+||| +.|+..++.+++++|+.
T Consensus 185 tpLh~A~----~~g~~~~v~~Ll~~gad~n~~d~~G~TpL-h~A~~~g~~~iv~~Ll~ 237 (276)
T 4hbd_A 185 TALMLAV----SHGRVDVVKALLACEADVNVQDDDGSTAL-MCACEHGHKEIAGLLLA 237 (276)
T ss_dssp CHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHHT
T ss_pred CHHHHHH----HcCCHHHHHHHHhCCCCCCCCCCCCCCHH-HHHHHCCCHHHHHHHHh
Confidence 5555555 44455555555555555555555555555 33333444445555544
No 94
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.84 E-value=6.5e-21 Score=171.50 Aligned_cols=129 Identities=32% Similarity=0.475 Sum_probs=113.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCC------cccccCCCCc
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAF------IEAKANNGMT 76 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------~~~~~~~g~t 76 (438)
.|+||||+||..|+.+++++|++ .|++++..|..|+||||+|+..|+.+++++|++.|++ ++..+..|.|
T Consensus 44 ~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t 119 (236)
T 1ikn_D 44 LQQTPLHLAVITNQPEIAEALLG----AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHT 119 (236)
T ss_dssp TCCCHHHHHHHTTCHHHHHCCCS----CCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCC
Confidence 58899999999999999999998 6888999999999999999999999999999999876 5677888999
Q ss_pred HHHHHhhcccccCcHHHHHHHHhCCCCCcccCC-CCCccccccccCCCchhHHHHHHhccchHHH
Q 013706 77 PLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN-EGKTPLDHLSNGPGSAKLRELLLWHSEEQRK 140 (438)
Q Consensus 77 ~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~-~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~ 140 (438)
|||+|+ ..|+.+++++|+++|++++..+. .|+||| |.|+..++.+++++|+..|++...
T Consensus 120 ~L~~A~----~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL-~~A~~~~~~~~v~~Ll~~ga~~~~ 179 (236)
T 1ikn_D 120 CLHLAS----IHGYLGIVELLVSLGADVNAQEPCNGRTAL-HLAVDLQNPDLVSLLLKCGADVNR 179 (236)
T ss_dssp HHHHHH----HTTCHHHHHHHHHHTCCTTCCCTTTCCCHH-HHHHHTTCHHHHHHHHTTTCCSCC
T ss_pred HHHHHH----HcCCHHHHHHHHHcCCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCCc
Confidence 999999 78899999999999999999987 999999 556667888999999988876543
No 95
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.84 E-value=7.8e-21 Score=173.82 Aligned_cols=128 Identities=21% Similarity=0.270 Sum_probs=116.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
.|+||||+||..|+.+++++|++ .|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 77 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLIS----QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNAC 77 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH----TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence 68999999999999999999999 68899999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706 83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK 140 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~ 140 (438)
..|+.+++++|+++|++++. +..|.||+ +.|+..++.+++++|+..+.+...
T Consensus 78 ----~~~~~~~v~~Ll~~g~~~~~-~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~ 129 (261)
T 2xai_A 78 ----VSGSWDCVNLLLQHGASVQP-ESDLASPI-HEAARRGHVECVNSLIAYGGNIDH 129 (261)
T ss_dssp ----HHTCHHHHHHHHHTTCCSSC-SCTTCCHH-HHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred ----HcCCHHHHHHHHHCCCCCCC-CCCCCCHH-HHHHHcCcHHHHHHHHHcCCCCCc
Confidence 88999999999999999985 45699999 666667889999999988776443
No 96
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.84 E-value=3.6e-21 Score=174.20 Aligned_cols=108 Identities=27% Similarity=0.395 Sum_probs=101.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCccccc-CCCCcHHHHH
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA-NNGMTPLHLS 81 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A 81 (438)
.|+||||+||..|+.++++.|++ ++++|.+|..|+||||+|+..|+.+++++|+++|++++.++ ..|+||||+|
T Consensus 44 ~g~t~L~~A~~~g~~~~v~~Ll~-----~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A 118 (244)
T 3ui2_A 44 EYETPWWTAARKADEQALSQLLE-----DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 118 (244)
T ss_dssp HHHHHHHHHHTTTCHHHHHHTTT-----TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHc-----CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence 47899999999999999999997 56899999999999999999999999999999999999998 8899999999
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccc
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS 119 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a 119 (438)
+ ..|+.+++++|+++|++++..|..|+||||+++
T Consensus 119 ~----~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~ 152 (244)
T 3ui2_A 119 A----GYVRPEVVEALVELGADIEVEDERGLTALELAR 152 (244)
T ss_dssp H----HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred H----HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence 9 889999999999999999999999999995554
No 97
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.84 E-value=5.5e-21 Score=174.00 Aligned_cols=130 Identities=28% Similarity=0.443 Sum_probs=120.1
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCC-CcccccCCCCcHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA-FIEAKANNGMTPLHL 80 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~ 80 (438)
..|+||||+||..|+.++|++|++ .|++++..|..|+||||+|+..|+.+++++|+++++ +++.++..|.||||+
T Consensus 55 ~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~ 130 (253)
T 1yyh_A 55 RTGETALHLAARYSRSDAAKRLLE----ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLIL 130 (253)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHH
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHH
Confidence 379999999999999999999999 789999999999999999999999999999999987 899999999999999
Q ss_pred HhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706 81 SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK 140 (438)
Q Consensus 81 A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~ 140 (438)
|+ ..++.+++++|+++|++++..|..|+||| |.|+..++.+++++|+..+++...
T Consensus 131 A~----~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~ 185 (253)
T 1yyh_A 131 AA----RLAVEGMLEDLINSHADVNAVDDLGKSAL-HWAAAVNNVDAAVVLLKNGANKDM 185 (253)
T ss_dssp HH----HHTCSSHHHHHHHTTCCTTCBCTTSCBHH-HHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred HH----HcChHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCCC
Confidence 99 78899999999999999999999999999 556667889999999988876543
No 98
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.84 E-value=4.9e-21 Score=152.04 Aligned_cols=106 Identities=40% Similarity=0.507 Sum_probs=99.7
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
..|+||||+||..|+.+++++|++ .+++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus 7 ~~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A 82 (115)
T 2l6b_A 7 KDGNTPLHNAAKNGHAEEVKKLLS----KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA 82 (115)
T ss_dssp CSSCCHHHHHHHHTCHHHHHHHTT----TTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 479999999999999999999999 6889999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCCccc
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l 115 (438)
+ ..++.+++++|+++|++++..+..|.+|-
T Consensus 83 ~----~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 83 K----KNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp H----TTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred H----HCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 9 88999999999999999999999999885
No 99
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.84 E-value=1.3e-20 Score=165.06 Aligned_cols=125 Identities=22% Similarity=0.229 Sum_probs=115.6
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
.+.||||.|+..|+.++++.|+.. .+.+++..|..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 80 (201)
T 3hra_A 4 YEVGALLEAANQRDTKKVKEILQD---TTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAG 80 (201)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHTC---TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred ccccHHHHHHHhccHHHHHHHHHc---CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 689999999999999999999984 45589999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcHHHHHHHH-hCCCCCcccCCCCCccccccccCCCchhHHHHHHhcc
Q 013706 83 WYSIRSEDYATVKTLL-EYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS 135 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll-~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~ 135 (438)
..++.+++++|+ ..+++++..|..|.||| +.|+..++.+++++|+..+
T Consensus 81 ----~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g 129 (201)
T 3hra_A 81 ----AQGRTEILAYMLKHATPDLNKHNRYGGNAL-IPAAEKGHIDNVKLLLEDG 129 (201)
T ss_dssp ----HTTCHHHHHHHHHHSCCCTTCCCTTSCCSH-HHHHHTTCHHHHHHHHHHC
T ss_pred ----HcCCHHHHHHHHhccCcccccccCCCCcHH-HHHHHcCCHHHHHHHHHcC
Confidence 889999999999 56889999999999999 6666678889999999877
No 100
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.84 E-value=1.1e-20 Score=170.35 Aligned_cols=135 Identities=29% Similarity=0.445 Sum_probs=113.9
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCccccc-CCCCcHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA-NNGMTPLHL 80 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~ 80 (438)
..|+||||+|+..|+.+++++|+++....+.+++..|..|+||||+|+..|+.+++++|+++|++++..+ ..|.||||+
T Consensus 77 ~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~ 156 (241)
T 1k1a_A 77 RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIH 156 (241)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHH
Confidence 3688999999999999999999985333344788888899999999999999999999999999998888 789999999
Q ss_pred HhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706 81 SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 141 (438)
Q Consensus 81 A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~ 141 (438)
|+ ..++.+++++|+++|++++..|..|+||| +.|+..++.+++++|+..+++...+
T Consensus 157 A~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~~ 212 (241)
T 1k1a_A 157 AV----ENNSLSMVQLLLQHGANVNAQMYSGSSAL-HSASGRGLLPLVRTLVRSGADSSLK 212 (241)
T ss_dssp HH----HTTCHHHHHHHHHTTCCTTCBCTTSCBHH-HHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred HH----HcCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHcCCHHHHHHHHhcCCCCCCc
Confidence 98 78889999999999999999999999999 5555677888888888888775544
No 101
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.84 E-value=1.2e-20 Score=175.89 Aligned_cols=131 Identities=27% Similarity=0.341 Sum_probs=113.1
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCC--------
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANN-------- 73 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-------- 73 (438)
..|+||||+||..|+.+++++|++ .|++++..|..|+||||+|+..|+.+++++|+++|++++..+..
T Consensus 71 ~~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A 146 (299)
T 1s70_B 71 VDGLTALHQACIDDNVDMVKFLVE----NGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIA 146 (299)
T ss_dssp TTCCBHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHH
Confidence 368999999999999999999999 68899999999999999999999999999999999988876654
Q ss_pred ----------------------------------------------------CCcHHHHHhhcccccCcHHHHHHHHhCC
Q 013706 74 ----------------------------------------------------GMTPLHLSVWYSIRSEDYATVKTLLEYN 101 (438)
Q Consensus 74 ----------------------------------------------------g~t~L~~A~~~~~~~~~~~~~~~Ll~~g 101 (438)
|.||||+|+ ..|+.+++++|+++|
T Consensus 147 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~----~~g~~~~v~~Ll~~g 222 (299)
T 1s70_B 147 EEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAA----AKGYTEVLKLLIQAR 222 (299)
T ss_dssp CSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHH----HHTCHHHHHHHHTTT
T ss_pred HhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHH----HCCcHHHHHHHHHcC
Confidence 456666666 678899999999999
Q ss_pred CCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706 102 ADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 141 (438)
Q Consensus 102 a~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~ 141 (438)
++++..|..|+||| |.|+..++.+++++|+..+++....
T Consensus 223 ~d~~~~d~~g~tpL-~~A~~~~~~~~v~~Ll~~gad~~~~ 261 (299)
T 1s70_B 223 YDVNIKDYDGWTPL-HAAAHWGKEEACRILVENLCDMEAV 261 (299)
T ss_dssp CCTTCCCTTCCCHH-HHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred CCCCCcCCCCCcHH-HHHHhcCCHHHHHHHHHcCCCCCCc
Confidence 99999999999999 6666678889999999888775543
No 102
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.83 E-value=9.2e-21 Score=198.96 Aligned_cols=210 Identities=17% Similarity=0.232 Sum_probs=152.3
Q ss_pred hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706 162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 241 (438)
Q Consensus 162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 241 (438)
..++|++.+++.+...+... ..+......+..++||+||||||||++|+++|+.++. +++.+++++
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~-------~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~-------~~~~i~~s~ 523 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMA-------RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-------ELLRFDMSE 523 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHH-------HTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTC-------EEEEEEGGG
T ss_pred hhccCHHHHHHHHHHHHHHH-------hcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC-------CEEEEechh
Confidence 34778888888777654322 2233222334457999999999999999999998853 788888877
Q ss_pred cccc------------ccccc-hHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC--------
Q 013706 242 LVGE------------FVGHT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------- 300 (438)
Q Consensus 242 ~~~~------------~~g~~-~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------- 300 (438)
+... |+|.. ...+...+..+.++||||||||++.+ ++++.|++.|+++
T Consensus 524 ~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~-----------~~~~~Ll~~le~~~~~~~~g~ 592 (758)
T 1r6b_X 524 YMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP-----------DVFNILLQVMDNGTLTDNNGR 592 (758)
T ss_dssp CSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCH-----------HHHHHHHHHHHHSEEEETTTE
T ss_pred hcchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccCH-----------HHHHHHHHHhcCcEEEcCCCC
Confidence 5432 33332 22356777888899999999999875 5679999999864
Q ss_pred -----CEEEEEecCChhHH-------------------HH-hhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccc
Q 013706 301 -----KVVVIFAGYSEPMK-------------------RV-IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTED 355 (438)
Q Consensus 301 -----~v~vi~~~~~~~~~-------------------~~-~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~ 355 (438)
++++|++++..... .+ -...|+|++||+.+|.|++|+.+++..|++.++.+...+
T Consensus 593 ~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~ 672 (758)
T 1r6b_X 593 KADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQ 672 (758)
T ss_dssp EEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHH
Confidence 35688887652200 00 023799999999999999999999999999999865432
Q ss_pred cccccccccccccHHHHHHHHHHHhhHhhhcccc--ccchHHHHHHHHHHh
Q 013706 356 SLLYGFKLHSSCSMDAIAALIEKETTEKQRREMN--GGLVDPMLVNARENL 404 (438)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n--~~~l~~~~~~a~~~~ 404 (438)
.... .+...++++++..+..+.| ++| +|.+++++++++...
T Consensus 673 ~~~~--~~~~~~~~~a~~~l~~~~~------~~~~g~R~l~~~i~~~~~~~ 715 (758)
T 1r6b_X 673 LDQK--GVSLEVSQEARNWLAEKGY------DRAMGARPMARVIQDNLKKP 715 (758)
T ss_dssp HHHT--TEEEEECHHHHHHHHHHHC------BTTTBTTTHHHHHHHHHTHH
T ss_pred HHHC--CcEEEeCHHHHHHHHHhCC------CcCCCchHHHHHHHHHHHHH
Confidence 1111 2234678999999999887 555 899999999998763
No 103
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.83 E-value=7.5e-21 Score=159.55 Aligned_cols=122 Identities=30% Similarity=0.473 Sum_probs=114.3
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
..|+||||+ |..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus 34 ~~g~t~L~~-~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 108 (156)
T 1bd8_A 34 RFGKTALQV-MMFGSTAIALELLK----QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLA 108 (156)
T ss_dssp TTSCCHHHH-SCTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred CCCCcHHHH-HHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence 369999999 99999999999999 6899999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhc
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~ 134 (438)
+ ..|+.+++++|++. ++++..|..|.||+ +.|+..++.+++++|+.+
T Consensus 109 ~----~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l-~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 109 V----QEGHTAVVSFLAAE-SDLHRRDARGLTPL-ELALQRGAQDLVDILQGH 155 (156)
T ss_dssp H----HHTCHHHHHHHHTT-SCTTCCCTTSCCHH-HHHHHSCCHHHHHHHHTT
T ss_pred H----HhChHHHHHHHHhc-cCCCCcCCCCCCHH-HHHHHcCcHHHHHHHHhh
Confidence 9 88999999999999 99999999999999 666667888999998753
No 104
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.83 E-value=1.7e-20 Score=167.11 Aligned_cols=130 Identities=28% Similarity=0.443 Sum_probs=119.8
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCC-CcccccCCCCcHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA-FIEAKANNGMTPLHL 80 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~-~~~~~~~~g~t~L~~ 80 (438)
..|+||||+||..|+.+++++|++ .+++++..|..|+||||+|+..|+.+++++|++.++ +++..+..|.||||+
T Consensus 23 ~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~ 98 (223)
T 2f8y_A 23 RTGETALHLAARYSRSDAAKRLLE----ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLIL 98 (223)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHH
T ss_pred CCCCchHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHH
Confidence 379999999999999999999999 688999999999999999999999999999999987 899999999999999
Q ss_pred HhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706 81 SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK 140 (438)
Q Consensus 81 A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~ 140 (438)
|+ ..++.+++++|+++|++++..|..|+||| |.|+..++.+++++|+..+.+...
T Consensus 99 A~----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~ 153 (223)
T 2f8y_A 99 AA----RLAVEGMLEDLINSHADVNAVDDLGKSAL-HWAAAVNNVDAAVVLLKNGANKDM 153 (223)
T ss_dssp HH----HHTCHHHHHHHHHTTCCTTCBCTTSCBHH-HHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HH----HhCcHHHHHHHHHcCCCCcCcCCCCCcHH-HHHHHcCCHHHHHHHHHcCCCCCC
Confidence 99 88999999999999999999999999999 556667889999999988766543
No 105
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.83 E-value=8.7e-21 Score=175.09 Aligned_cols=130 Identities=28% Similarity=0.324 Sum_probs=116.5
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcc---cccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE---LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPL 78 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L 78 (438)
..|+||||+||..|+.++|++|++ .+++ ++.+|..|+||||+|+..|+.+++++|+++|++++.++..|+|||
T Consensus 7 ~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL 82 (282)
T 1oy3_D 7 EDGDTALHLAVIHQHEPFLDFLLG----FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL 82 (282)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHH----HHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHh----cCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 479999999999999999999998 4555 889999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccCcHHHHHHHHhCCCC-----------------------------------------------CcccCCCC
Q 013706 79 HLSVWYSIRSEDYATVKTLLEYNAD-----------------------------------------------CSAKDNEG 111 (438)
Q Consensus 79 ~~A~~~~~~~~~~~~~~~Ll~~ga~-----------------------------------------------~~~~d~~g 111 (438)
|+|+ ..++.+++++|++++++ ++..|..|
T Consensus 83 ~~A~----~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 158 (282)
T 1oy3_D 83 HLAC----RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG 158 (282)
T ss_dssp HHHT----TTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred HHHH----HcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCC
Confidence 9999 88999999999988765 66788899
Q ss_pred CccccccccCCCchhHHHHHHhccchHHH
Q 013706 112 KTPLDHLSNGPGSAKLRELLLWHSEEQRK 140 (438)
Q Consensus 112 ~t~l~~~a~~~~~~~~~~lL~~~~~~~~~ 140 (438)
+||| |.|+..++.+++++|+..+++...
T Consensus 159 ~t~L-~~A~~~g~~~~v~~Ll~~g~~~~~ 186 (282)
T 1oy3_D 159 HTPL-HVAVIHKDAEMVRLLRDAGADLNK 186 (282)
T ss_dssp CCHH-HHHHHTTCHHHHHHHHHHTCCTTC
T ss_pred cCHH-HHHHHcCCHHHHHHHHHcCCCCCC
Confidence 9999 666667889999999988776543
No 106
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.83 E-value=5.1e-21 Score=174.42 Aligned_cols=129 Identities=25% Similarity=0.279 Sum_probs=113.8
Q ss_pred CCCCcHHHHHHHc---CCHHHHHHHhcCCCCCCccccc-----------ccCCCChHHHHHHHcCCHHHHHHHHHCCCCc
Q 013706 2 QMAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVELEA-----------QNMYGETPLHMAAKNGCNEAAKLLLAHGAFI 67 (438)
Q Consensus 2 ~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~-----------~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~ 67 (438)
..|+||||+||.. |+.+++++|++ .|++++. .|..|+||||+|+..|+.+++++|+++|+++
T Consensus 41 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~----~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~ 116 (256)
T 2etb_A 41 STGKTCLMKAVLNLQDGVNACIMPLLQ----IDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV 116 (256)
T ss_dssp TTTBCHHHHHHHTCBTTBCTTHHHHHH----HHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CCCCCHHHHHHHccccchHHHHHHHHh----cCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 3799999999999 99999999998 5665553 3467999999999999999999999999999
Q ss_pred ccccCC-------------CCcHHHHHhhcccccCcHHHHHHHHh---CCCCCcccCCCCCcccccccc-CCCchh----
Q 013706 68 EAKANN-------------GMTPLHLSVWYSIRSEDYATVKTLLE---YNADCSAKDNEGKTPLDHLSN-GPGSAK---- 126 (438)
Q Consensus 68 ~~~~~~-------------g~t~L~~A~~~~~~~~~~~~~~~Ll~---~ga~~~~~d~~g~t~l~~~a~-~~~~~~---- 126 (438)
+.++.. |.||||+|+ ..|+.+++++|++ +|++++.+|..|+||||+++. ..+..+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~g~tpL~~A~----~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~ 192 (256)
T 2etb_A 117 HLRACGRFFQKHQGTCFYFGELPLSLAA----CTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSAL 192 (256)
T ss_dssp TCCCCSGGGSCCSSSCCCSCSSHHHHHH----HTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHH
T ss_pred CcccccccccccccccccCCCCHHHHHH----HcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHH
Confidence 999886 999999999 8899999999999 999999999999999955553 256666
Q ss_pred ---HHHHHHhccchH
Q 013706 127 ---LRELLLWHSEEQ 138 (438)
Q Consensus 127 ---~~~lL~~~~~~~ 138 (438)
++++|+..+++.
T Consensus 193 ~~~iv~~Ll~~ga~~ 207 (256)
T 2etb_A 193 VIHMYDGLLQMGARL 207 (256)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCc
Confidence 899999888765
No 107
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.83 E-value=6.3e-21 Score=176.78 Aligned_cols=126 Identities=21% Similarity=0.154 Sum_probs=116.9
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
..|+||||+||..|+.++|++|++ .|++++..| |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus 29 ~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A 102 (285)
T 3kea_A 29 VHGHSASYYAIADNNVRLVCTLLN----AGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYA 102 (285)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHH----TTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHh----CCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHH
Confidence 479999999999999999999999 688888874 89999999999999999999999999999999999999999
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCC-CccccccccCCCchhHHHHHHhccchH
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEG-KTPLDHLSNGPGSAKLRELLLWHSEEQ 138 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g-~t~l~~~a~~~~~~~~~~lL~~~~~~~ 138 (438)
+ ..|+.+++++|+++|++++..|..| .||| +.|+..++.+++++|+..+...
T Consensus 103 ~----~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L-~~A~~~~~~~~v~~Ll~~g~~~ 155 (285)
T 3kea_A 103 V----DSGNMQTVKLFVKKNWRLMFYGKTGWKTSF-YHAVMLNDVSIVSYFLSEIPST 155 (285)
T ss_dssp H----HTTCHHHHHHHHHHCGGGGGCSSSGGGSHH-HHHHHTTCHHHHHHHHTTSCTT
T ss_pred H----HcCCHHHHHHHHhcCCCCCccCCCCCCCHH-HHHHHcCCHHHHHHHHhCCCcc
Confidence 9 8899999999999999999999999 7999 6666678899999999887654
No 108
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.83 E-value=2.7e-20 Score=170.24 Aligned_cols=128 Identities=24% Similarity=0.290 Sum_probs=118.0
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
..|+||||+||..|+.+++++|++ .|++++..|..|+||||+|+..|+.+++++|+++|++++. +..|.||||+|
T Consensus 34 ~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~L~~A 108 (261)
T 2xai_A 34 ADHVSPLHEACLGGHLSCVKILLK----HGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEA 108 (261)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-SCTTCCHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCHHHHH
Confidence 379999999999999999999999 6899999999999999999999999999999999999986 45699999999
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHH
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 139 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~ 139 (438)
+ ..|+.+++++|+++|++++..|..|+||| |.|+..++.+++++|+..+++..
T Consensus 109 ~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~ 161 (261)
T 2xai_A 109 A----RRGHVECVNSLIAYGGNIDHKISHLGTPL-YLACENQQRACVKKLLESGADVN 161 (261)
T ss_dssp H----HTTCHHHHHHHHHTTCCTTCCBTTTBCHH-HHHHHTTCHHHHHHHHHHTCCTT
T ss_pred H----HcCcHHHHHHHHHcCCCCCcCCCCCCCHH-HHHHHhCCHHHHHHHHHcCCCCC
Confidence 9 88999999999999999999999999999 66666788999999998887654
No 109
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.82 E-value=4e-20 Score=166.56 Aligned_cols=130 Identities=31% Similarity=0.414 Sum_probs=118.3
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCC----CcccccCCCCcH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGA----FIEAKANNGMTP 77 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~~~~g~t~ 77 (438)
..|+||||+|+..|+.+++++|++ .|++++..|..|+||||+|+..|+.+++++|++.++ +++..+..|.||
T Consensus 44 ~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~ 119 (241)
T 1k1a_A 44 NLRQTPLHLAVITTLPSVVRLLVT----AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119 (241)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH
T ss_pred ccCCCHHHHHHHcCCHHHHHHHHH----cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcH
Confidence 368999999999999999999999 688999999999999999999999999999999987 889999999999
Q ss_pred HHHHhhcccccCcHHHHHHHHhCCCCCcccC-CCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706 78 LHLSVWYSIRSEDYATVKTLLEYNADCSAKD-NEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK 140 (438)
Q Consensus 78 L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d-~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~ 140 (438)
||+|+ ..++.+++++|++.|++++..+ ..|.||| +.|+..++.+++++|+..+.+...
T Consensus 120 L~~A~----~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~ 178 (241)
T 1k1a_A 120 LHVAV----NTECQETVQLLLERGADIDAVDIKSGRSPL-IHAVENNSLSMVQLLLQHGANVNA 178 (241)
T ss_dssp HHHHH----HHTCHHHHHHHHHTTCCTTCCCTTTCCCHH-HHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHH----HcCCHHHHHHHHHcCCCcccccccCCCcHH-HHHHHcCCHHHHHHHHHcCCCCCC
Confidence 99999 8899999999999999999988 8899999 666667888999999988776543
No 110
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.82 E-value=3.7e-20 Score=171.63 Aligned_cols=128 Identities=21% Similarity=0.260 Sum_probs=116.9
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
..|+||||+||..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 57 ~~g~t~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A 132 (285)
T 3d9h_A 57 VSDWSPMHEAAIHGHQLSLRNLIS----QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNA 132 (285)
T ss_dssp CCSCCHHHHHHHTTCHHHHHHHHH----TTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHH
T ss_pred ccCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 368999999999999999999999 6889999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHH
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 139 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~ 139 (438)
+ ..|+.+++++|+++|++++..+ .|.||| +.|+..++.+++++|+..+.+..
T Consensus 133 ~----~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L-~~A~~~g~~~~v~~Ll~~g~~~~ 184 (285)
T 3d9h_A 133 C----VSGSWDCVNLLLQHGASVQPES-DLASPI-HEAARRGHVECVNSLIAYGGNID 184 (285)
T ss_dssp H----HHTCHHHHHHHHHTTCCSSCSC-TTSCHH-HHHHHHTCHHHHHHHHHTTCCTT
T ss_pred H----HcCHHHHHHHHHHCCCCCCCCC-CCCCHH-HHHHHcCCHHHHHHHHHCCCCCC
Confidence 9 8899999999999999998654 599999 66666788899999998876643
No 111
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.82 E-value=5.4e-20 Score=164.34 Aligned_cols=124 Identities=33% Similarity=0.404 Sum_probs=91.3
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCC--ccccc-ccCCCChHHHHHHHcCCHHHHHHHHHCC--CCcccccCCCCcH
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDK--VELEA-QNMYGETPLHMAAKNGCNEAAKLLLAHG--AFIEAKANNGMTP 77 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~--~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~ 77 (438)
.|+||||+|+..|+.+++++|++ .+ .+++. .+..|+||||+|+..|+.+++++|+++| ++++.++..|.||
T Consensus 35 ~g~t~L~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~ 110 (228)
T 2dzn_A 35 DGRIPLHWSVSFQAHEITSFLLS----KMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTC 110 (228)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHH----TCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh----ccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCH
Confidence 57777777777777777777777 34 45555 6677777777777777777777777777 7777777777777
Q ss_pred HHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhcc
Q 013706 78 LHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS 135 (438)
Q Consensus 78 L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~ 135 (438)
||+|+ ..++.+++++|+++|++++..|..|+||| +.|+..++.+++++|+..+
T Consensus 111 L~~A~----~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g 163 (228)
T 2dzn_A 111 LHLAV----GKKWFEVSQFLIENGASVRIKDKFNQIPL-HRAASVGSLKLIELLCGLG 163 (228)
T ss_dssp HHHHH----HTTCHHHHHHHHHTTCCSCCCCTTSCCHH-HHHHHTTCHHHHHHHHTTT
T ss_pred HHHHH----HcCCHhHHHHHHHcCCCccccCCCCCCHH-HHHHHcCCHHHHHHHHhcC
Confidence 77777 66777777777777777777777777777 4444566777777777665
No 112
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.82 E-value=7e-20 Score=169.73 Aligned_cols=125 Identities=29% Similarity=0.334 Sum_probs=69.4
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
.|+||||+|+..|+.+++++|++ .+++++.. ..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus 124 ~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~ 198 (285)
T 3d9h_A 124 DWHTPLFNACVSGSWDCVNLLLQ----HGASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLAC 198 (285)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHH----TTCCSSCS-CTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHH
T ss_pred CCCCHHHHHHHcCHHHHHHHHHH----CCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 45566666666666666666665 34444432 23555666665555555555555555555555555555555555
Q ss_pred hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchH
Q 013706 83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQ 138 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~ 138 (438)
..++.+++++|++.|++++. |..|+||| +.|+..++.+++++|+..+++.
T Consensus 199 ----~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L-~~A~~~~~~~~v~~Ll~~gad~ 248 (285)
T 3d9h_A 199 ----ENQQRACVKKLLESGADVNQ-GKGQDSPL-HAVVRTASEELACLLMDFGADT 248 (285)
T ss_dssp ----HTTCHHHHHHHHHTTCCTTC-CBTTBCHH-HHHHHTTCHHHHHHHHHTTCCT
T ss_pred ----HcCcHHHHHHHHHCCCCCCC-CCCCCCHH-HHHHHcCCHHHHHHHHHCCCCC
Confidence 55555555555555555553 55555555 3333445555555555555443
No 113
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.82 E-value=6e-20 Score=165.14 Aligned_cols=126 Identities=26% Similarity=0.307 Sum_probs=66.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhh
Q 013706 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVW 83 (438)
Q Consensus 4 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 83 (438)
|.||||+|+..|+.+++++|+++ .+.+++..+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus 77 g~t~L~~A~~~~~~~~~~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~- 152 (237)
T 3b7b_A 77 GSTCLHLAAKKGHYEVVQYLLSN---GQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAA- 152 (237)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHTT---TCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH-
T ss_pred CCcHHHHHHHcCCHHHHHHHHhC---CCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHH-
Confidence 44555555555555555555542 11445555555555555555555555555555555555555555555555555
Q ss_pred cccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706 84 YSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137 (438)
Q Consensus 84 ~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~ 137 (438)
..|+.+++++|+++|++++..|..|.||| +.|...+..+++++|+..+++
T Consensus 153 ---~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~gad 202 (237)
T 3b7b_A 153 ---FSGCVDIAEILLAAKCDLHAVNIHGDSPL-HIAARENRYDCVVLFLSRDSD 202 (237)
T ss_dssp ---HHCCHHHHHHHHTTTCCTTCCCTTCCCHH-HHHHHTTCHHHHHHHHTTTCC
T ss_pred ---HCCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHhCCHhHHHHHHHcCCC
Confidence 44555555555555555555555555555 333334455555555555444
No 114
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.82 E-value=1.7e-20 Score=172.73 Aligned_cols=128 Identities=28% Similarity=0.324 Sum_probs=111.4
Q ss_pred CCCcHHHHHHHc---CCHHHHHHHhcCCCCCCcc-------ccc----ccCCCChHHHHHHHcCCHHHHHHHHHCCCCcc
Q 013706 3 MAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVE-------LEA----QNMYGETPLHMAAKNGCNEAAKLLLAHGAFIE 68 (438)
Q Consensus 3 ~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~-------~~~----~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~ 68 (438)
.|+||||+||.. |+.++|++|++ .|++ ++. .|..|+||||+|+..|+.+++++|+++|++++
T Consensus 53 ~g~tpL~~A~~~~~~g~~~~v~~Ll~----~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~ 128 (273)
T 2pnn_A 53 TGKTCLLKAMLNLHNGQNDTIALLLD----VARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ 128 (273)
T ss_dssp TCCCHHHHHHHSCBTTBCHHHHHHHH----HHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred CCCCHHHHHHHHHhcCChHHHHHHHH----hhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence 799999999987 99999999999 4443 232 56789999999999999999999999999999
Q ss_pred cccC--------------CCCcHHHHHhhcccccCcHHHHHHHHh---CCCCCcccCCCCCccccccccCCCc-------
Q 013706 69 AKAN--------------NGMTPLHLSVWYSIRSEDYATVKTLLE---YNADCSAKDNEGKTPLDHLSNGPGS------- 124 (438)
Q Consensus 69 ~~~~--------------~g~t~L~~A~~~~~~~~~~~~~~~Ll~---~ga~~~~~d~~g~t~l~~~a~~~~~------- 124 (438)
.++. .|.||||+|+ ..|+.+++++|++ +|++++.+|..|+||||+++. .++
T Consensus 129 ~~~~~~~~~~~~~~~~~~~g~tpL~~A~----~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~-~~~~~~~~~~ 203 (273)
T 2pnn_A 129 AAANGDFFKKTKGRPGFYFGELPLSLAA----CTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVE-VADNTVDNTK 203 (273)
T ss_dssp CCBCSGGGSSCSSSCCCCSCBSHHHHHH----HTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHH-HCCSCHHHHH
T ss_pred ccccccccccccccccccCCCCHHHHHH----HcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHH-ccCcchhHHH
Confidence 9987 7999999999 8899999999999 999999999999999955554 333
Q ss_pred --hhHHHHHHhccchHH
Q 013706 125 --AKLRELLLWHSEEQR 139 (438)
Q Consensus 125 --~~~~~lL~~~~~~~~ 139 (438)
.+++++|+..+++..
T Consensus 204 ~~~~~v~~Ll~~ga~~n 220 (273)
T 2pnn_A 204 FVTSMYNEILILGAKLH 220 (273)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhhcc
Confidence 578888888776653
No 115
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.82 E-value=5.9e-20 Score=165.19 Aligned_cols=129 Identities=29% Similarity=0.426 Sum_probs=120.0
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
+.|+||||+||..|+.+++++|++ .|++++..+..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|
T Consensus 9 ~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 84 (237)
T 3b7b_A 9 QNKRSPLHAAAEAGHVDICHMLVQ----AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLA 84 (237)
T ss_dssp CCSCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHH
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHH----cCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHH
Confidence 479999999999999999999999 6889999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCcHHHHHHHHhCC-CCCcccCCCCCccccccccCCCchhHHHHHHhccchHH
Q 013706 82 VWYSIRSEDYATVKTLLEYN-ADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 139 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~g-a~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~ 139 (438)
+ ..|+.+++++|++.+ ++++..+..|+||+ +.++..++.+++++|+..+.+..
T Consensus 85 ~----~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll~~g~~~~ 138 (237)
T 3b7b_A 85 A----KKGHYEVVQYLLSNGQMDVNCQDDGGWTPM-IWATEYKHVDLVKLLLSKGSDIN 138 (237)
T ss_dssp H----HTTCHHHHHHHHTTTCCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCTT
T ss_pred H----HcCCHHHHHHHHhCCCCCcccCCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCCC
Confidence 9 889999999999998 89999999999999 66666788999999998876643
No 116
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.82 E-value=2.4e-19 Score=189.93 Aligned_cols=219 Identities=17% Similarity=0.274 Sum_probs=154.7
Q ss_pred HhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecc
Q 013706 161 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 240 (438)
Q Consensus 161 l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 240 (438)
+++++|++.+++.+...+.... .+......+..++||+||||||||++|+++|+.+... ..+++.++++
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~-------~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~----~~~~i~i~~~ 625 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRAR-------AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT----EEAMIRIDMT 625 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHG-------GGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS----GGGEEEECTT
T ss_pred hcccCCcHHHHHHHHHHHHHHh-------cccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC----CCcEEEEech
Confidence 3678999988888887654332 1111122233589999999999999999999988531 2378888887
Q ss_pred ccccc------------ccccch-HHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-------
Q 013706 241 DLVGE------------FVGHTG-PKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------- 300 (438)
Q Consensus 241 ~~~~~------------~~g~~~-~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------- 300 (438)
.+... |+|... ..+...+....++||||||++.+.+ .+++.|++.|+++
T Consensus 626 ~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~-----------~~~~~Ll~~l~~~~~~~~~g 694 (854)
T 1qvr_A 626 EYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHP-----------DVFNILLQILDDGRLTDSHG 694 (854)
T ss_dssp TCCSSGGGGGC--------------CHHHHHHHCSSEEEEESSGGGSCH-----------HHHHHHHHHHTTTEECCSSS
T ss_pred hccchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccCH-----------HHHHHHHHHhccCceECCCC
Confidence 65432 345443 4566677777889999999999875 6679999999865
Q ss_pred ------CEEEEEecCChh---------------HHHHh------hhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccc
Q 013706 301 ------KVVVIFAGYSEP---------------MKRVI------ASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQT 353 (438)
Q Consensus 301 ------~v~vi~~~~~~~---------------~~~~~------~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~ 353 (438)
++++|++++... +...+ ...|+|++||+.++.|++|+.+++..|+..++.+..
T Consensus 695 ~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~ 774 (854)
T 1qvr_A 695 RTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLR 774 (854)
T ss_dssp CCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHH
T ss_pred CEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHH
Confidence 456888877521 11111 125889999999999999999999999999998654
Q ss_pred cccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhcc
Q 013706 354 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLR 407 (438)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r 407 (438)
.+.... .+...++++++..+..+.| ..+||+|.+++++++++.....+
T Consensus 775 ~~~~~~--~~~~~~~~~a~~~L~~~~~----~~~gn~R~L~~~i~~~~~~~~~~ 822 (854)
T 1qvr_A 775 ARLAEK--RISLELTEAAKDFLAERGY----DPVFGARPLRRVIQRELETPLAQ 822 (854)
T ss_dssp HHHHTT--TCEEEECHHHHHHHHHHHC----BTTTBTSTHHHHHHHHTHHHHHH
T ss_pred HHHHhC--CceEEECHHHHHHHHHcCC----CCCCChHHHHHHHHHHHHHHHHH
Confidence 321111 2235688999999999876 12699999999999988765433
No 117
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.82 E-value=1.9e-19 Score=165.55 Aligned_cols=173 Identities=13% Similarity=0.182 Sum_probs=119.5
Q ss_pred CCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccch----HHHHHHHHHc---cCcEEEEe
Q 013706 197 RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTG----PKTRRRIKEA---EGGILFVD 269 (438)
Q Consensus 197 ~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~a---~~~il~iD 269 (438)
.++.++||+||||||||++|+++|+.++. +++.+++++ .++|... ..++..|+.+ .++|||||
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~-------~~~~i~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~vl~iD 131 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNF-------PFIKICSPD---KMIGFSETAKCQAMKKIFDDAYKSQLSCVVVD 131 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTC-------SEEEEECGG---GCTTCCHHHHHHHHHHHHHHHHTSSEEEEEEC
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCC-------CEEEEeCHH---HhcCCchHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 46678999999999999999999998754 788887765 3455433 4566777764 36999999
Q ss_pred CcccccCCCCCCCchhHHHHHHHHHhhccC-----CCEEEEEecCChhHHHHhhhCc-CccCCCCcceeCCCCCH-HHHH
Q 013706 270 EAYRLIPMQKADDKDYGIEALEEIMSVMDG-----GKVVVIFAGYSEPMKRVIASNE-GFCRRVTKFFHFNDFNS-EELA 342 (438)
Q Consensus 270 Eid~l~~~~~~~~~~~~~~~~~~ll~~~~~-----~~v~vi~~~~~~~~~~~~~~~p-~l~~R~~~~i~~~~~~~-~e~~ 342 (438)
|+|.+...+..+ ......+++.|...+++ ..+++|++++..... ++ .+++||+..|.+|+++. +++.
T Consensus 132 Eid~l~~~~~~~-~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l-----~~~~l~~rf~~~i~~p~l~~r~~i~ 205 (272)
T 1d2n_A 132 DIERLLDYVPIG-PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVL-----QEMEMLNAFSTTIHVPNIATGEQLL 205 (272)
T ss_dssp CHHHHTTCBTTT-TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHH-----HHTTCTTTSSEEEECCCEEEHHHHH
T ss_pred ChhhhhccCCCC-hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhc-----chhhhhcccceEEcCCCccHHHHHH
Confidence 999997654322 22334566777777763 346677776655432 44 67889999999999987 6666
Q ss_pred HHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706 343 KILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 403 (438)
Q Consensus 343 ~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~ 403 (438)
.++... ..++++++..++....+.. -++|.|.+.++++.|...
T Consensus 206 ~i~~~~----------------~~~~~~~~~~l~~~~~g~~--~~g~ir~l~~~l~~a~~~ 248 (272)
T 1d2n_A 206 EALELL----------------GNFKDKERTTIAQQVKGKK--VWIGIKKLLMLIEMSLQM 248 (272)
T ss_dssp HHHHHH----------------TCSCHHHHHHHHHHHTTSE--EEECHHHHHHHHHHHTTS
T ss_pred HHHHhc----------------CCCCHHHHHHHHHHhcCCC--ccccHHHHHHHHHHHhhh
Confidence 666541 1235566666666553211 256888999998887554
No 118
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.82 E-value=1.8e-20 Score=171.19 Aligned_cols=133 Identities=26% Similarity=0.338 Sum_probs=111.7
Q ss_pred CCCCcHHHHHH---HcCCHHHHHHHhcCCCCC-------CcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCccccc
Q 013706 2 QMAQTPLHVSA---GYNKAEIVKSLLEWPGND-------KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA 71 (438)
Q Consensus 2 ~~g~tpLh~A~---~~g~~~~v~~Ll~~~~~~-------~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~ 71 (438)
..|+||||+|+ ..|+.+++++|++++... ..+++..|..|+||||+|+..|+.+++++|+++|++++.++
T Consensus 44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~ 123 (260)
T 3jxi_A 44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQA 123 (260)
T ss_dssp TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccc
Confidence 35999999999 679999999999832110 13345556689999999999999999999999999999998
Q ss_pred --------------CCCCcHHHHHhhcccccCcHHHHHHHHh---CCCCCcccCCCCCccccccccCCCc--------hh
Q 013706 72 --------------NNGMTPLHLSVWYSIRSEDYATVKTLLE---YNADCSAKDNEGKTPLDHLSNGPGS--------AK 126 (438)
Q Consensus 72 --------------~~g~t~L~~A~~~~~~~~~~~~~~~Ll~---~ga~~~~~d~~g~t~l~~~a~~~~~--------~~ 126 (438)
..|+||||+|+ ..|+.+++++|++ +|++++.+|..|+||||+++..+.. .+
T Consensus 124 ~~~~~~~~~~~~~~~~g~tpL~~A~----~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~ 199 (260)
T 3jxi_A 124 RGRFFQPKDEGGYFYFGELPLSLAA----CTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTK 199 (260)
T ss_dssp EECCCSSSCCCCSCCSCSSHHHHHH----HTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHH
T ss_pred cccccCcccccccccCCCCHHHHHH----HcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHH
Confidence 68999999999 8899999999999 9999999999999999555532221 47
Q ss_pred HHHHHHhccchH
Q 013706 127 LRELLLWHSEEQ 138 (438)
Q Consensus 127 ~~~lL~~~~~~~ 138 (438)
++++|+..+++.
T Consensus 200 ~v~~Ll~~ga~~ 211 (260)
T 3jxi_A 200 MYDLLLIKCAKL 211 (260)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhCccc
Confidence 888888887665
No 119
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.81 E-value=1.4e-20 Score=169.78 Aligned_cols=129 Identities=17% Similarity=0.168 Sum_probs=89.3
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
.|+||||.|+..|+.+.++.|++ .|++++. +..|.||||+|+..|+.+++++|++.|+++|.+|..|.||||+|+
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~----~g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~ 78 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIA----HGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAV 78 (239)
T ss_dssp --------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHH
T ss_pred cccccCchhhhhhhHHHHHHHhc----cCCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence 69999999999999999999999 6788875 467999999999999999999999999999999999999999999
Q ss_pred hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706 83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 141 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~ 141 (438)
..|+.+++++|+++|++++..|..|+||| |.|+..++.+++++|+..+++....
T Consensus 79 ----~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL-~~A~~~~~~~~v~~Ll~~ga~~~~~ 132 (239)
T 1ycs_B 79 ----CAGHTEIVKFLVQFGVNVNAADSDGWTPL-HCAASCNNVQVCKFLVESGAAVFAM 132 (239)
T ss_dssp ----HHTCHHHHHHHHHHTCCTTCCCTTCCCHH-HHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred ----HcCCHHHHHHHHHcCCCCCccCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCccee
Confidence 88999999999999999999999999999 6666678899999999988775543
No 120
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.81 E-value=3.6e-19 Score=164.75 Aligned_cols=241 Identities=9% Similarity=0.008 Sum_probs=155.1
Q ss_pred hcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCC---cCCCCEEEeecc
Q 013706 164 IVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVTEVQRT 240 (438)
Q Consensus 164 i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~---~~~~~~~~~~~~ 240 (438)
+.|.+.-..+|...+.... ....+++++|+||||||||++++.+++++..... .....++.+++.
T Consensus 22 L~~Re~E~~~i~~~L~~~i------------~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~ 89 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSL------------MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDAL 89 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETT
T ss_pred cCCHHHHHHHHHHHHHHHh------------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecc
Confidence 5556655555555433221 1347889999999999999999999999964221 112357788876
Q ss_pred cccc----------ccc------ccchHHHHHHHHHc-----cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhc--
Q 013706 241 DLVG----------EFV------GHTGPKTRRRIKEA-----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM-- 297 (438)
Q Consensus 241 ~~~~----------~~~------g~~~~~~~~~~~~a-----~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~-- 297 (438)
.+.+ ++. |++...+...|... ...|+||||+|.|. .| +++..|+++.
T Consensus 90 ~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q--------~~L~~l~~~~~~ 159 (318)
T 3te6_A 90 ELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SE--------KILQYFEKWISS 159 (318)
T ss_dssp CCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CT--------HHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cc--------hHHHHHHhcccc
Confidence 5332 222 33556778888764 23799999999998 33 5666666644
Q ss_pred cCCCEEEEEecCChhH-HHHhhhCcCccCCCC-cceeCCCCCHHHHHHHHHHHHhccccccc----c-------------
Q 013706 298 DGGKVVVIFAGYSEPM-KRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKMNNQTEDSL----L------------- 358 (438)
Q Consensus 298 ~~~~v~vi~~~~~~~~-~~~~~~~p~l~~R~~-~~i~~~~~~~~e~~~il~~~l~~~~~~~~----~------------- 358 (438)
+++++.+|+.++.-.. +..+ ++++++||. .+|.|++|+.+|+.+|++..+.......+ .
T Consensus 160 ~~s~~~vI~i~n~~d~~~~~L--~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~ 237 (318)
T 3te6_A 160 KNSKLSIICVGGHNVTIREQI--NIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREG 237 (318)
T ss_dssp SSCCEEEEEECCSSCCCHHHH--HTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC---
T ss_pred cCCcEEEEEEecCcccchhhc--chhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccc
Confidence 4567888877654322 2222 788899995 78999999999999999999987432100 0
Q ss_pred ------ccc-cccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccC-CCCChhhhhhccHHHHHHHH
Q 013706 359 ------YGF-KLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSF-DCLDTDELRTITLEDLEAGL 430 (438)
Q Consensus 359 ------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~-~~~~~~~~~~i~~~d~~~a~ 430 (438)
.++ .....++++++.-.++.... ..|+.|...+++++|...+-.+... .. ..++...||.+.+.+++
T Consensus 238 ~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~----~~GD~R~Al~ilr~A~~~ae~e~~~k~~-~~~~~~~i~~~~~~~~~ 312 (318)
T 3te6_A 238 QNQKIPDNVIVINHKINNKITQLIAKNVAN----VSGSTEKAFKICEAAVEISKKDFVRKGG-LQKGKLVVSQEMVPRYF 312 (318)
T ss_dssp -----CTTEEEECEECCHHHHHHHHHHHHH----HHCSHHHHHHHHHHHHHHHHHHHHHHTT-EETTEECCSEECCTHHH
T ss_pred ccccccccccccccccCHHHHHHHHHHHHh----hCChHHHHHHHHHHHHHHHHHHHHhccC-CCCCcEEeeHHHHHHHH
Confidence 001 12234688888888775321 1577888899999999877443211 11 12234456666666665
Q ss_pred HHH
Q 013706 431 KLL 433 (438)
Q Consensus 431 ~~~ 433 (438)
..+
T Consensus 313 ~~~ 315 (318)
T 3te6_A 313 SEA 315 (318)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 121
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.80 E-value=1.3e-18 Score=154.77 Aligned_cols=203 Identities=23% Similarity=0.224 Sum_probs=139.6
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 239 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 239 (438)
.+++++|.+..++.+.+++.. ..+.+++|+||||||||++|+.+++.+...+. ...++.+++
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~----------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~--~~~~~~~~~ 76 (226)
T 2chg_A 15 TLDEVVGQDEVIQRLKGYVER----------------KNIPHLLFSGPPGTGKTATAIALARDLFGENW--RDNFIEMNA 76 (226)
T ss_dssp SGGGCCSCHHHHHHHHHHHHT----------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGG--GGGEEEEET
T ss_pred CHHHHcCcHHHHHHHHHHHhC----------------CCCCeEEEECCCCCCHHHHHHHHHHHHhcccc--ccceEEecc
Confidence 478899999998888877431 13456999999999999999999998753221 225666666
Q ss_pred ccccccccccchHHHHHHHH-----HccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCChh
Q 013706 240 TDLVGEFVGHTGPKTRRRIK-----EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEP 312 (438)
Q Consensus 240 ~~~~~~~~g~~~~~~~~~~~-----~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~ 312 (438)
+...+.. .....+..... ...+++|||||+|.+.+. ..+.|+..++. ..+.+|++++...
T Consensus 77 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-----------~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 77 SDERGID--VVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-----------AQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp TCTTCHH--HHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH-----------HHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred ccccChH--HHHHHHHHHhcccCCCccCceEEEEeChhhcCHH-----------HHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 5432210 01111222221 135689999999998752 23556666653 4466666655433
Q ss_pred HHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccc
Q 013706 313 MKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGL 392 (438)
Q Consensus 313 ~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 392 (438)
. .++++.+||. .+.|++|+.+++.+++..++.+.. ..++++++..+... + .||.+.
T Consensus 144 ~-----~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~l~~~-~------~g~~r~ 199 (226)
T 2chg_A 144 R-----IIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEG-----------VKITEDGLEALIYI-S------GGDFRK 199 (226)
T ss_dssp G-----SCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHT-----------CCBCHHHHHHHHHH-H------TTCHHH
T ss_pred h-----cCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHH-c------CCCHHH
Confidence 2 2788899995 999999999999999998886532 23566777777754 4 788898
Q ss_pred hHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHH
Q 013706 393 VDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 431 (438)
Q Consensus 393 l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~ 431 (438)
+.++++.+...+ ..|+.+|+.+++.
T Consensus 200 l~~~l~~~~~~~--------------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 200 AINALQGAAAIG--------------EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHHTC--------------SCBCHHHHHHHHH
T ss_pred HHHHHHHHHhcC--------------ceecHHHHHHHhc
Confidence 888888776542 4789999998875
No 122
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.80 E-value=3e-20 Score=172.22 Aligned_cols=128 Identities=21% Similarity=0.172 Sum_probs=115.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCC-CcHHHHH
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNG-MTPLHLS 81 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g-~t~L~~A 81 (438)
+|+||||+||..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|++++.++..| .||||+|
T Consensus 61 ~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A 136 (285)
T 3kea_A 61 ENEFPLHQAATLEDTKIVKILLF----SGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHA 136 (285)
T ss_dssp TTCCHHHHHTTSSSCHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Confidence 68999999999999999999999 789999999999999999999999999999999999999999999 7999999
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK 140 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~ 140 (438)
+ ..|+.+++++|+++|+++... ..|+||| |.|+..++.+++++|+..+++...
T Consensus 137 ~----~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L-~~A~~~g~~~~v~~Ll~~gad~n~ 189 (285)
T 3kea_A 137 V----MLNDVSIVSYFLSEIPSTFDL-AILLSCI-HITIKNGHVDMMILLLDYMTSTNT 189 (285)
T ss_dssp H----HTTCHHHHHHHHTTSCTTCCC-STHHHHH-HHHHHTTCHHHHHHHHHHHHHTCT
T ss_pred H----HcCCHHHHHHHHhCCCccccc-cCCccHH-HHHHHcChHHHHHHHHHcCCCCCc
Confidence 9 889999999999999877332 2899999 666667889999999988766443
No 123
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.80 E-value=1.7e-20 Score=177.46 Aligned_cols=135 Identities=22% Similarity=0.159 Sum_probs=116.5
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCC---HHHHHHHHHCC-CCcccccCCCCcH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGC---NEAAKLLLAHG-AFIEAKANNGMTP 77 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~---~~~v~~Ll~~g-~~~~~~~~~g~t~ 77 (438)
..|+||||+||..|+.++|++|++ .|++++.+|..|+||||+|+..|+ .++++.|++++ ++++.+|..|+||
T Consensus 129 ~~g~TpLh~Aa~~g~~~~v~~Ll~----~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tp 204 (327)
T 1sw6_A 129 EHGNTPLHWLTSIANLELVKHLVK----HGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTI 204 (327)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCH
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCH
Confidence 379999999999999999999999 789999999999999999999998 68888888886 7899999999999
Q ss_pred HHHHhhcccccCcHHHHHHHHhCCC---------------------------------------------CCcccCCCCC
Q 013706 78 LHLSVWYSIRSEDYATVKTLLEYNA---------------------------------------------DCSAKDNEGK 112 (438)
Q Consensus 78 L~~A~~~~~~~~~~~~~~~Ll~~ga---------------------------------------------~~~~~d~~g~ 112 (438)
||+|+......|+.+++++|++.++ +++.+|..|+
T Consensus 205 Lh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~ 284 (327)
T 1sw6_A 205 LHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGD 284 (327)
T ss_dssp HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSC
T ss_pred HHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCC
Confidence 9999932222789999999987643 5778889999
Q ss_pred ccccccccCCCchhHHHHHHhccchHHHH
Q 013706 113 TPLDHLSNGPGSAKLRELLLWHSEEQRKR 141 (438)
Q Consensus 113 t~l~~~a~~~~~~~~~~lL~~~~~~~~~~ 141 (438)
||| |.|+..++.+++++|+..|++...+
T Consensus 285 TpL-h~A~~~g~~~~v~~Ll~~Gad~~~~ 312 (327)
T 1sw6_A 285 TCL-NIAARLGNISIVDALLDYGADPFIA 312 (327)
T ss_dssp CHH-HHHHHHCCHHHHHHHHHTTCCTTCC
T ss_pred CHH-HHHHHcCCHHHHHHHHHcCCCCccc
Confidence 999 6666678899999999988876544
No 124
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.80 E-value=7.9e-20 Score=170.35 Aligned_cols=121 Identities=25% Similarity=0.324 Sum_probs=111.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
.|.||||+||..|+.++|++|++ .|+++|..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 39 ~~~t~l~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~ 114 (299)
T 1s70_B 39 DDGAVFLAACSSGDTEEVLRLLE----RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA 114 (299)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHH----HCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCccHHHHHHHcCCHHHHHHHHH----cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence 46799999999999999999999 78899999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHH
Q 013706 83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLL 132 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~ 132 (438)
..|+.+++++|+++|++++..|..|.||| +.++..+..+++..++
T Consensus 115 ----~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~~~~~ll 159 (299)
T 1s70_B 115 ----SCGYLDIAEYLISQGAHVGAVNSEGDTPL-DIAEEEAMEELLQNEV 159 (299)
T ss_dssp ----HHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHCCSHHHHHHHHHHH
T ss_pred ----HcCCHHHHHHHHhCCCCCCCcCCCCCCHH-HHHHhcchHHHHHHHH
Confidence 88999999999999999999999999999 5555566667666655
No 125
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.80 E-value=7.1e-20 Score=180.19 Aligned_cols=127 Identities=39% Similarity=0.483 Sum_probs=115.2
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
..|+||||+||..|+.++|++|++ .|++++..|..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|
T Consensus 12 ~~g~t~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 87 (437)
T 1n11_A 12 ESGLTPLHVASFMGHLPIVKNLLQ----RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCA 87 (437)
T ss_dssp ---CCHHHHHHHHTCHHHHHHHHH----TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHH
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHH
Confidence 368999999999999999999999 6889999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~ 137 (438)
+ ..|+.+++++|+++|++++..+..|.||| +.|+..++.+++++|+..+.+
T Consensus 88 ~----~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~~~~~ 138 (437)
T 1n11_A 88 A----RIGHTNMVKLLLENNANPNLATTAGHTPL-HIAAREGHVETVLALLEKEAS 138 (437)
T ss_dssp H----HHTCHHHHHHHHHHTCCTTCCCTTCCCHH-HHHHHHTCHHHHHHHHHTTCC
T ss_pred H----HCCCHHHHHHHHhCCCCCCCCCCCCCcHH-HHHHHcCCHHHHHHHHhCCCC
Confidence 9 88999999999999999999999999999 556667788888888876654
No 126
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.80 E-value=1.6e-19 Score=172.38 Aligned_cols=231 Identities=17% Similarity=0.158 Sum_probs=142.5
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC-------
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPT------- 231 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~------- 231 (438)
..|++++|++.+++.+.... + .....++||+||||||||++|+++++.+........
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~--~--------------~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTA--V--------------DPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHH--H--------------CGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCchhccChHHHHHHHHHHh--h--------------CCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 35889999998766543221 1 113457999999999999999999997742100000
Q ss_pred -------------------CCEEEeecccccccccccch--H--------HHHHHHHHccCcEEEEeCcccccCCCCCCC
Q 013706 232 -------------------DRVTEVQRTDLVGEFVGHTG--P--------KTRRRIKEAEGGILFVDEAYRLIPMQKADD 282 (438)
Q Consensus 232 -------------------~~~~~~~~~~~~~~~~g~~~--~--------~~~~~~~~a~~~il~iDEid~l~~~~~~~~ 282 (438)
.+++.+........++|... + .....+..+.++||||||+|.+.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~------ 158 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED------ 158 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH------
T ss_pred cccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH------
Confidence 11222221111122333210 0 001234556689999999999976
Q ss_pred chhHHHHHHHHHhhccCC---------------CEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCC-CHHHHHHHHH
Q 013706 283 KDYGIEALEEIMSVMDGG---------------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDF-NSEELAKILH 346 (438)
Q Consensus 283 ~~~~~~~~~~ll~~~~~~---------------~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~-~~~e~~~il~ 346 (438)
.+++.|+..++.+ .+++|+++++... . .+|+|++||+..+.+++| +.+++.+|++
T Consensus 159 -----~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~-~---l~~~L~~R~~~~~~l~~~~~~~~~~~il~ 229 (350)
T 1g8p_A 159 -----HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEG-D---LRPQLLDRFGLSVEVLSPRDVETRVEVIR 229 (350)
T ss_dssp -----HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSC-C---CCHHHHTTCSEEEECCCCCSHHHHHHHHH
T ss_pred -----HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCC-C---CCHHHHhhcceEEEcCCCCcHHHHHHHHH
Confidence 3447777777643 6788888775321 1 278999999888999999 5677778887
Q ss_pred HHHhcccc-----------------ccc-cccccccccccHHHHHHHHHHHhhHhhhcccc---ccchHHHHHHHHHHhh
Q 013706 347 IKMNNQTE-----------------DSL-LYGFKLHSSCSMDAIAALIEKETTEKQRREMN---GGLVDPMLVNARENLD 405 (438)
Q Consensus 347 ~~l~~~~~-----------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n---~~~l~~~~~~a~~~~~ 405 (438)
..+..... ... .........++++++..+....+ .+| .|.+.++++.|...+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~------~~~~~~~R~~~~ll~~a~~~A~ 303 (350)
T 1g8p_A 230 RRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCI------ALGSDGLRGELTLLRSARALAA 303 (350)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHH------HSSSCSHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH------HhCCCCccHHHHHHHHHHHHHH
Confidence 64321100 000 00001123578889999988887 333 4888888888776652
Q ss_pred ccccCCCCChhhhhhccHHHHHHHHHHHHh
Q 013706 406 LRLSFDCLDTDELRTITLEDLEAGLKLLLR 435 (438)
Q Consensus 406 ~r~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 435 (438)
.+ +...|+.+|+.+++..+.+
T Consensus 304 ~~---------~~~~v~~~~v~~a~~~~l~ 324 (350)
T 1g8p_A 304 LE---------GATAVGRDHLKRVATMALS 324 (350)
T ss_dssp HT---------TCSBCCHHHHHHHHHHHHG
T ss_pred Hc---------CCCcCCHHHHHHHHHHHHh
Confidence 21 2245899999999887653
No 127
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.80 E-value=1.1e-19 Score=178.78 Aligned_cols=129 Identities=34% Similarity=0.503 Sum_probs=98.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
.|.||||+|+..|+.+++++|++ .+++++..|..|+||||+|+..|+.+++++|+++|++++.++..|+||||+|+
T Consensus 244 ~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~ 319 (437)
T 1n11_A 244 QGVTPLHLAAQEGHAEMVALLLS----KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVAS 319 (437)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHT----TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHH
T ss_pred CCCCHHHHHHHCCCHHHHHHHHh----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHH
Confidence 56777777777777777777777 56777777777888888888888888888888888888888888888888887
Q ss_pred hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706 83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK 140 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~ 140 (438)
..|+.+++++|+++|++++.+|..|+||| +.|+..++.+++++|+..|++...
T Consensus 320 ----~~g~~~~v~~Ll~~gad~n~~~~~g~t~L-~~A~~~g~~~iv~~Ll~~ga~~~~ 372 (437)
T 1n11_A 320 ----HYGNIKLVKFLLQHQADVNAKTKLGYSPL-HQAAQQGHTDIVTLLLKNGASPNE 372 (437)
T ss_dssp ----HSSCSHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred ----HcCcHHHHHHHHhcCCCCCCCCCCCCCHH-HHHHHCChHHHHHHHHHCcCCCCC
Confidence 67777888888888888888888888888 445556677788888777765443
No 128
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.80 E-value=2.1e-19 Score=165.83 Aligned_cols=130 Identities=28% Similarity=0.331 Sum_probs=120.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCC----HHHHHHHHHCCCCcccccCCCCcHH
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGC----NEAAKLLLAHGAFIEAKANNGMTPL 78 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~t~L 78 (438)
.|.||||+|+..|+.+++++|+++ .+.+++..|..|+||||+|+..++ .+++++|+++|++++.+|..|.|||
T Consensus 147 ~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L 223 (285)
T 1wdy_A 147 GGATALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 223 (285)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence 588999999999999999999983 488999999999999999999999 9999999999999999999999999
Q ss_pred HHHhhcccccCcHHHHHHHHh-CCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706 79 HLSVWYSIRSEDYATVKTLLE-YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK 140 (438)
Q Consensus 79 ~~A~~~~~~~~~~~~~~~Ll~-~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~ 140 (438)
|+|+ ..++.+++++|++ .|++++.+|..|+||| +.|...++.+++++|+..|++...
T Consensus 224 ~~A~----~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l-~~A~~~~~~~i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 224 ILAV----EKKHLGLVQRLLEQEHIEINDTDSDGKTAL-LLAVELKLKKIAELLCKRGASTDC 281 (285)
T ss_dssp HHHH----HTTCHHHHHHHHHSSSCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred HHHH----HcCCHHHHHHHHhccCCCccccCCCCCcHH-HHHHHcCcHHHHHHHHHcCCCCCc
Confidence 9999 8899999999998 7999999999999999 666667899999999998876543
No 129
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.80 E-value=9.4e-20 Score=173.93 Aligned_cols=124 Identities=23% Similarity=0.282 Sum_probs=115.3
Q ss_pred CCcHHHHHHHc-CCHHHHHHHhcCCCCCCccccccc--CCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHH
Q 013706 4 AQTPLHVSAGY-NKAEIVKSLLEWPGNDKVELEAQN--MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHL 80 (438)
Q Consensus 4 g~tpLh~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~d--~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 80 (438)
+.|+||.|+.. |+.++++.|++ .|+++|..+ ..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~----~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~ 274 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALA----HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHH 274 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHH----TTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHH----cCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 45799999999 99999999999 789999988 889999999999999999999999999999999999999999
Q ss_pred HhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccc
Q 013706 81 SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSE 136 (438)
Q Consensus 81 A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~ 136 (438)
|+ ..|+.+++++|+++|++++..|.+|.||| +.|+..++.+++++|+..+.
T Consensus 275 A~----~~g~~~~v~~LL~~Gad~~~~d~~G~TpL-~~A~~~g~~~iv~lLl~~~~ 325 (368)
T 3jue_A 275 AT----ILGHTGLACLFLKRGADLGARDSEGRDPL-TIAMETANADIVTLLRLAKM 325 (368)
T ss_dssp HH----HHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHHC
T ss_pred HH----HcCcHHHHHHHHHCcCCCCCcCCCCCCHH-HHHHHCCCHHHHHHHHHcCC
Confidence 99 88999999999999999999999999999 66666788899999986653
No 130
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.80 E-value=1.1e-19 Score=174.57 Aligned_cols=134 Identities=20% Similarity=0.231 Sum_probs=111.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccc-----------------ccCCCChHHHHHHHcC--CHHHHHHHHHC
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA-----------------QNMYGETPLHMAAKNG--CNEAAKLLLAH 63 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~-----------------~d~~g~t~L~~A~~~g--~~~~v~~Ll~~ 63 (438)
.|+||||+|+..|+.++|++|+++....+.+++. .|..|+||||+|+..| +.+++++|+++
T Consensus 83 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ 162 (364)
T 3ljn_A 83 HGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL 162 (364)
T ss_dssp TTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc
Confidence 4566666666666666666666521111455555 8889999999999999 99999999999
Q ss_pred CCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCC-----CcccCCCCCccccccccCCCchhHHHHHHhccchH
Q 013706 64 GAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNAD-----CSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQ 138 (438)
Q Consensus 64 g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~-----~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~ 138 (438)
|++++.+|..|.||||+|+ ..|+.+++++|+++|++ ++..|..|+||| |.|+..++.+++++|+..+++.
T Consensus 163 ga~~~~~d~~g~t~L~~A~----~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~~gad~ 237 (364)
T 3ljn_A 163 GASPTAKDKADETPLMRAM----EFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL-HWAILINWEDVAMRFVEMGIDV 237 (364)
T ss_dssp TCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTT-HHHHTTTCHHHHHHHHTTTCCT
T ss_pred CCCCcccCCCCCCHHHHHH----HcCCHHHHHHHHhcccccccccccccCCCCCcHH-HHHHHcCCHHHHHHHHHcCCCC
Confidence 9999999999999999999 88999999999999999 999999999999 6666788999999999988775
Q ss_pred HHH
Q 013706 139 RKR 141 (438)
Q Consensus 139 ~~~ 141 (438)
...
T Consensus 238 ~~~ 240 (364)
T 3ljn_A 238 NME 240 (364)
T ss_dssp TCC
T ss_pred CCC
Confidence 443
No 131
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.80 E-value=6.9e-19 Score=173.72 Aligned_cols=177 Identities=20% Similarity=0.279 Sum_probs=123.8
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCC---cCCCCEEE
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVTE 236 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~---~~~~~~~~ 236 (438)
.++.++|.+..++++.+++. .....++||+||||||||++|+++|+.+..... ....+++.
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~----------------r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLS----------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHH----------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred CCCCccCcHHHHHHHHHHHh----------------ccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE
Confidence 57889999998888877643 135678999999999999999999999854222 23457777
Q ss_pred eecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhH
Q 013706 237 VQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPM 313 (438)
Q Consensus 237 ~~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~ 313 (438)
++++ +.+.|+.+..++.+|+.+. ++||||| .. ..+.+.|+..|+.+.+.+|++|+.+.+
T Consensus 242 l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~~-----------~~a~~~L~~~L~~g~v~vI~at~~~e~ 303 (468)
T 3pxg_A 242 LDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID----AA-----------IDASNILKPSLARGELQCIGATTLDEY 303 (468)
T ss_dssp C-------------CTTHHHHHHHHHTCCCCEEEEC----C-------------------CCCTTSSSCEEEEECCTTTT
T ss_pred eeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe----Cc-----------hhHHHHHHHhhcCCCEEEEecCCHHHH
Confidence 7776 6788888888888887664 7999999 11 134488999999999999999999887
Q ss_pred HHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHH
Q 013706 314 KRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK 378 (438)
Q Consensus 314 ~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (438)
...+..+|++++||. .|.|++|+.+++.+|++.++.+... .....++++++..+...
T Consensus 304 ~~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~-------~~~~~i~~~al~~l~~~ 360 (468)
T 3pxg_A 304 RKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEA-------HHRVSITDDAIEAAVKL 360 (468)
T ss_dssp HHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGG-------GSSCSCCHHHHHHHHHH
T ss_pred HHHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHH-------hcCCCCCHHHHHHHHHH
Confidence 666667999999995 6999999999999999988766431 11233555666555543
No 132
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.80 E-value=4.3e-20 Score=155.06 Aligned_cols=105 Identities=18% Similarity=0.231 Sum_probs=87.4
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCCh-HHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGET-PLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHL 80 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 80 (438)
..|+||||+|+ .|+.+++++|++ .|++++.+|..|+| |||+|+..|+.+++++|+++|++++.+|..|+||||+
T Consensus 43 ~~g~t~L~~A~-~~~~~~v~~Ll~----~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~ 117 (156)
T 1bi7_B 43 SYGRRPIQVMM-MGSARVAELLLL----HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDL 117 (156)
T ss_dssp SSSCCTTTSSC-TTCHHHHHHHHT----TTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHH
T ss_pred CCCCCHHHHHH-cCCHHHHHHHHH----cCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence 36899999986 999999999999 68999999999999 9999999999999999999999999999999999999
Q ss_pred HhhcccccCcHHHHHHHHhCCCCCcccCCCCCccc
Q 013706 81 SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115 (438)
Q Consensus 81 A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l 115 (438)
|+ ..++.+++++|+++|++++..|..|.||.
T Consensus 118 A~----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~ 148 (156)
T 1bi7_B 118 AE----ELGHRDVARYLRAAAGGTRGSNHARIDAA 148 (156)
T ss_dssp HH----HHTCHHHHHHHSSCC--------------
T ss_pred HH----HhCHHHHHHHHHHcCCCCCccCcCcCccc
Confidence 99 88999999999999999999999999998
No 133
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.79 E-value=1.4e-19 Score=171.73 Aligned_cols=132 Identities=28% Similarity=0.325 Sum_probs=118.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCC----HHHHHHHHHCCCCcccccCCCCcHH
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGC----NEAAKLLLAHGAFIEAKANNGMTPL 78 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~t~L 78 (438)
.|.||||+||..|+.++|++||++ .|+++|.+|..|+||||+++..++ ..++++|+++|+++|.+|..|+|||
T Consensus 167 ~g~T~L~~A~~~g~~~~v~~LL~~---~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L 243 (337)
T 4g8k_A 167 GGATALMDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 243 (337)
T ss_dssp CSCCHHHHHHHHTCHHHHHHHHHH---SCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHH
T ss_pred CCCcHHHHHHHCCCHHHHHHHHhc---cCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence 689999999999999999999963 689999999999999999887543 4688999999999999999999999
Q ss_pred HHHhhcccccCcHHHHHHHHhC-CCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHHH
Q 013706 79 HLSVWYSIRSEDYATVKTLLEY-NADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKRR 142 (438)
Q Consensus 79 ~~A~~~~~~~~~~~~~~~Ll~~-ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~~ 142 (438)
|+|+ ..++.++++.|+.. |++++.+|.+|+||| |.|+..++.+++++|+..|++.+.+.
T Consensus 244 ~~a~----~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL-~~A~~~g~~~iv~~Ll~~GAd~n~~~ 303 (337)
T 4g8k_A 244 ILAV----EKKHLGLVQRLLEQEHIEINDTDSDGKTAL-LLAVELKLKKIAELLCKRGASTDCGD 303 (337)
T ss_dssp HHHH----HTTCHHHHHHHHTSTTCCTTCBCTTSCBHH-HHHHHTTCHHHHHHHHTTSCSSTTCC
T ss_pred HHHH----HhhhhHHHHHHHHhcCCcccCcCCCCCCHH-HHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence 9999 88999999999975 899999999999999 66667889999999999998765543
No 134
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.79 E-value=8.4e-20 Score=157.78 Aligned_cols=129 Identities=18% Similarity=0.144 Sum_probs=107.8
Q ss_pred CCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccc-CCCChHHHHHHHcCCH----HHHHHHHHCCCCcccccCCCCcHH
Q 013706 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN-MYGETPLHMAAKNGCN----EAAKLLLAHGAFIEAKANNGMTPL 78 (438)
Q Consensus 4 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d-~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t~L 78 (438)
++++||.|+..|+.+.++.++. .+ ++..+ ..|+||||+|+..|+. +++++|+++|+++|.+|..|+|||
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~----~~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL 79 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFE----KG--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLF 79 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHH----HS--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTH
T ss_pred cccHHHHHHHcCCHHHHHHHHh----cC--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHH
Confidence 5789999999999999999997 33 45556 7799999999999975 589999999999999999999999
Q ss_pred HHHhhcccccCc------HHHHHHHHhCCCCCcccCCCCC-ccccccccCC----CchhHHHHHHh-ccchHHHHH
Q 013706 79 HLSVWYSIRSED------YATVKTLLEYNADCSAKDNEGK-TPLDHLSNGP----GSAKLRELLLW-HSEEQRKRR 142 (438)
Q Consensus 79 ~~A~~~~~~~~~------~~~~~~Ll~~ga~~~~~d~~g~-t~l~~~a~~~----~~~~~~~lL~~-~~~~~~~~~ 142 (438)
|+|+ ..++ .+++++|+++|++++.+|..|+ ||||+++... +...++++|+. .|++...++
T Consensus 80 h~a~----~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d 151 (186)
T 3t8k_A 80 FPLF----QGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKD 151 (186)
T ss_dssp HHHH----HHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCC
T ss_pred HHHH----HcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccC
Confidence 9999 4444 5789999999999999999999 9995555422 23458888888 887765554
No 135
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.79 E-value=2.7e-19 Score=164.89 Aligned_cols=124 Identities=20% Similarity=0.248 Sum_probs=112.8
Q ss_pred CcHHHHHHHcCCHHHHHHHhcCCCCCCcc------cccccCCCChHHHHHHHc---CCHHHHHHHHHCCCCcccccCCCC
Q 013706 5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVE------LEAQNMYGETPLHMAAKN---GCNEAAKLLLAHGAFIEAKANNGM 75 (438)
Q Consensus 5 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~------~~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~ 75 (438)
.++||.|+..|+.+.+..+++ .|.+ ++..|..|+||||+|+.. |+.+++++|+++|+++|.+|..|+
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~----~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~ 206 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYA----DGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGS 206 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH----TTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCC
T ss_pred hhhhhhHhhhcccHHHHHHHH----hhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCC
Confidence 468999999999999999998 5666 455588999999999999 899999999999999999999999
Q ss_pred cHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706 76 TPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137 (438)
Q Consensus 76 t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~ 137 (438)
||||+|+ ..|+.+++++|+++|++++.+|.+|.||| +.|...++.+++++|+..++.
T Consensus 207 TpLh~A~----~~g~~~~v~~Ll~~gad~~~~d~~g~tpL-~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 207 TALHYCC----LTDNAECLKLLLRGKASIEIANESGETPL-DIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp CHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHHHTT
T ss_pred CHHHHHH----HcCCHHHHHHHHHcCCCCCCccCCCCCHH-HHHHHcCCHHHHHHHHHcCCC
Confidence 9999999 88999999999999999999999999999 666667889999999987654
No 136
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.79 E-value=3.1e-19 Score=172.68 Aligned_cols=231 Identities=16% Similarity=0.075 Sum_probs=152.5
Q ss_pred hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCC--cCCCCEEEeec
Q 013706 162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI--LPTDRVTEVQR 239 (438)
Q Consensus 162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~--~~~~~~~~~~~ 239 (438)
++++|.+...+.+.+++... .....+.+++|+||||||||++|+.+++.+..... -....++.+++
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~------------~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPA------------LRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGG------------TSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred CCCCCHHHHHHHHHHHHHHH------------HcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 67899998888888764432 11245778999999999999999999998843200 00226777876
Q ss_pred ccccc------c----------ccccchHH-HHHHHHHc----cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhcc
Q 013706 240 TDLVG------E----------FVGHTGPK-TRRRIKEA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD 298 (438)
Q Consensus 240 ~~~~~------~----------~~g~~~~~-~~~~~~~a----~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~ 298 (438)
..... . ..|.+... ...++... .+.||||||+|.+...+ ....++..++..++
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~------~~~~~l~~l~~~~~ 160 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP------GGQDLLYRITRINQ 160 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST------THHHHHHHHHHGGG
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC------CCChHHHhHhhchh
Confidence 64221 1 11222222 23333322 13599999999997642 12367777887776
Q ss_pred ----CCCEEEEEecCChhHHHHhhhCcCccCCCCc-ceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHH
Q 013706 299 ----GGKVVVIFAGYSEPMKRVIASNEGFCRRVTK-FFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA 373 (438)
Q Consensus 299 ----~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~-~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 373 (438)
..++.+|++++..+.... .++++.+||.. .+.|++|+.+++.+|+...+..... ...++++++.
T Consensus 161 ~~~~~~~~~~I~~t~~~~~~~~--l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~---------~~~~~~~~~~ 229 (387)
T 2v1u_A 161 ELGDRVWVSLVGITNSLGFVEN--LEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFN---------PGVLDPDVVP 229 (387)
T ss_dssp CC-----CEEEEECSCSTTSSS--SCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBC---------TTTBCSSHHH
T ss_pred hcCCCceEEEEEEECCCchHhh--hCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhcc---------CCCCCHHHHH
Confidence 557788888776643211 27888999965 8999999999999999998864210 1234556666
Q ss_pred HHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706 374 ALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 434 (438)
Q Consensus 374 ~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~ 434 (438)
.+....+ ..+||.|.+.++++.|...+.. .+...|+.+|+.++++.+.
T Consensus 230 ~l~~~~~----~~~G~~r~~~~~l~~a~~~a~~---------~~~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 230 LCAALAA----REHGDARRALDLLRVAGEIAER---------RREERVRREHVYSARAEIE 277 (387)
T ss_dssp HHHHHHH----SSSCCHHHHHHHHHHHHHHHHH---------TTCSCBCHHHHHHHHHHHH
T ss_pred HHHHHHH----HhccCHHHHHHHHHHHHHHHHH---------cCCCCcCHHHHHHHHHHHh
Confidence 6666553 1248899999999998776521 1235688888888887664
No 137
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.79 E-value=2.6e-19 Score=165.14 Aligned_cols=129 Identities=26% Similarity=0.261 Sum_probs=118.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccc-cCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQ-NMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
.|+||||.|+..|+.+++++|++ .+.+++.. +..|+||||+|+..|+.+++++|+++|++++.++..|.||||+|
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 79 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLA 79 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHH----cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 47899999999999999999999 67888888 77899999999999999999999999999999999999999999
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK 140 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~ 140 (438)
+ ..|+.+++++|+++|++++..|..|+||| +.++..++.+++++|+..+.+...
T Consensus 80 ~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~~~~Ll~~g~~~~~ 133 (285)
T 1wdy_A 80 A----IAGSVKLLKLFLSKGADVNECDFYGFTAF-MEAAVYGKVKALKFLYKRGANVNL 133 (285)
T ss_dssp H----HHTCHHHHHHHHHTTCCTTCBCTTCCBHH-HHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred H----HcCCHHHHHHHHHcCCCCCccCcccCCHH-HHHHHhCCHHHHHHHHHhCCCccc
Confidence 9 88999999999999999999999999999 666667889999999988766443
No 138
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.79 E-value=1.8e-19 Score=173.53 Aligned_cols=127 Identities=20% Similarity=0.265 Sum_probs=106.8
Q ss_pred CCCCcHHHHHHHcC---CHHHHHHHhcCCCCCCccccc--------ccCCCChHHHHHHHcCCHHHHHHHHHCC-CCccc
Q 013706 2 QMAQTPLHVSAGYN---KAEIVKSLLEWPGNDKVELEA--------QNMYGETPLHMAAKNGCNEAAKLLLAHG-AFIEA 69 (438)
Q Consensus 2 ~~g~tpLh~A~~~g---~~~~v~~Ll~~~~~~~~~~~~--------~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~ 69 (438)
..|+||||+|+..+ +.+++++|++ .|++++. .|..|+||||+|+..|+.+++++|++++ ++++.
T Consensus 233 ~~g~t~L~~A~~~~~~~~~~~v~~Ll~----~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~ 308 (373)
T 2fo1_E 233 RNGMTALMIVAHNEGRDQVASAKLLVE----KGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDK 308 (373)
T ss_dssp TTSCCHHHHHHHSCSTTHHHHHHHHHH----HTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTC
T ss_pred CCCCCHHHHHHHhCCcchHHHHHHHHH----CCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccC
Confidence 36788888888877 7888888888 5666664 5678999999999999999999999775 99999
Q ss_pred ccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706 70 KANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137 (438)
Q Consensus 70 ~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~ 137 (438)
+|..|.||||+|+ ..|+.+++++|+++|++++.+|..|+||+ +.|...++.+++++|+..+.+
T Consensus 309 ~d~~g~TpL~~A~----~~g~~~iv~~Ll~~gad~~~~d~~g~t~l-~~A~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 309 QDEDGKTPIMLAA----QEGRIEVVMYLIQQGASVEAVDATDHTAR-QLAQANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp CCTTCCCHHHHHH----HHTCHHHHHHHHHTTCCSSCCCSSSCCHH-HHHHHTTCHHHHHHHHTTC--
T ss_pred cCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCccCCCCCCCCHH-HHHHHcCCHHHHHHHHhcCcc
Confidence 9999999999999 78899999999999999999999999999 666667888999999877654
No 139
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.79 E-value=8.3e-19 Score=168.88 Aligned_cols=219 Identities=17% Similarity=0.156 Sum_probs=156.3
Q ss_pred HhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecc
Q 013706 161 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT 240 (438)
Q Consensus 161 l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 240 (438)
+..++|.+...+++.+.+..+ +....+++++|++|||||++|++++... .....+|+.++++
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~--------------a~~~~~vli~Ge~GtGK~~lAr~ih~~s----~r~~~~fv~v~~~ 197 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKI--------------SCAECPVLITGESGVGKEVVARLIHKLS----DRSKEPFVALNVA 197 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHH--------------TTCCSCEEEECSTTSSHHHHHHHHHHHS----TTTTSCEEEEETT
T ss_pred chhhhhccHHhhHHHHHHHHh--------------cCCCCCeEEecCCCcCHHHHHHHHHHhc----CCCCCCeEEEecC
Confidence 456788877766666665543 2356779999999999999999999854 3345699999998
Q ss_pred ccc-----ccccccchH-------HHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC--------
Q 013706 241 DLV-----GEFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------- 300 (438)
Q Consensus 241 ~~~-----~~~~g~~~~-------~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------- 300 (438)
.+. +..+|+... .....|+.|.+|+||||||+.+.+. ++..|++.++++
T Consensus 198 ~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~-----------~q~~Ll~~l~~~~~~~~g~~ 266 (387)
T 1ny5_A 198 SIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLE-----------AQAKLLRVIESGKFYRLGGR 266 (387)
T ss_dssp TSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHH-----------HHHHHHHHHHHSEECCBTCC
T ss_pred CCCHHHHHHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhCCHH-----------HHHHHHHHHhcCcEEeCCCC
Confidence 753 335554221 2345789999999999999999874 448888888652
Q ss_pred -----CEEEEEecCChhHHHHhh--hCcCccCCC-CcceeCCCCCH--HHHHHHHHHHHhccccccccccccccccccHH
Q 013706 301 -----KVVVIFAGYSEPMKRVIA--SNEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFKLHSSCSMD 370 (438)
Q Consensus 301 -----~v~vi~~~~~~~~~~~~~--~~p~l~~R~-~~~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~ 370 (438)
++.+|++|+.+....+-. -.+.|..|+ ...|.+|++.. +++..++..++.+...+ ++.. ...++++
T Consensus 267 ~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~---~~~~-~~~~~~~ 342 (387)
T 1ny5_A 267 KEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRK---YAKE-VEGFTKS 342 (387)
T ss_dssp SBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHH---TTCC-CCEECHH
T ss_pred ceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHH---cCCC-CCCCCHH
Confidence 467888888766544321 123344466 45677888764 89999999999875431 1111 2358899
Q ss_pred HHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHH
Q 013706 371 AIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL 430 (438)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~ 430 (438)
++..+..+.| |||.|+|+|++++|+..+ +-..|+.+|+...+
T Consensus 343 a~~~l~~~~w------pGNvreL~~~i~~~~~~~------------~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 343 AQELLLSYPW------YGNVRELKNVIERAVLFS------------EGKFIDRGELSCLV 384 (387)
T ss_dssp HHHHHHHSCC------TTHHHHHHHHHHHHHHHC------------CSSEECHHHHHHHC
T ss_pred HHHHHHhCCC------CcHHHHHHHHHHHHHHhC------------CCCcCcHHHCcHhh
Confidence 9999999999 999999999999998764 11357777776544
No 140
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.79 E-value=3.3e-18 Score=179.58 Aligned_cols=243 Identities=16% Similarity=0.208 Sum_probs=166.4
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCC---cCCCCEE
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVT 235 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~---~~~~~~~ 235 (438)
..|+.++|.+...+++.+.+. ...+.++||+||||||||++|+++++.+....+ .....++
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~----------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~ 246 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLC----------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIY 246 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHT----------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred CCCCCccCCHHHHHHHHHHHh----------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEE
Confidence 357889999988877776532 235678999999999999999999998864332 1244567
Q ss_pred Eeeccccc--ccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCC
Q 013706 236 EVQRTDLV--GEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 310 (438)
Q Consensus 236 ~~~~~~~~--~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~ 310 (438)
.++...+. .++.|+.+..++.+|+.+. ++||||||+|.+.+.+... .....+.+.|...++.+.+.+|++++.
T Consensus 247 ~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~--~~~~~~~~~L~~~l~~~~~~~I~at~~ 324 (758)
T 1r6b_X 247 SLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAAS--GGQVDAANLIKPLLSSGKIRVIGSTTY 324 (758)
T ss_dssp ECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSS--SCHHHHHHHHSSCSSSCCCEEEEEECH
T ss_pred EEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCC--cchHHHHHHHHHHHhCCCeEEEEEeCc
Confidence 77766665 4588888888988888764 5899999999998765432 123456677888888899999999888
Q ss_pred hhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccc
Q 013706 311 EPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNG 390 (438)
Q Consensus 311 ~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 390 (438)
..+...+..+|+|.+||. .+.|+.|+.+++.+|++..+..... .....++++++..+.....+. .......
T Consensus 325 ~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~-------~~~v~~~~~al~~~~~~s~~~-i~~~~lp 395 (758)
T 1r6b_X 325 QEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEA-------HHDVRYTAKAVRAAVELAVKY-INDRHLP 395 (758)
T ss_dssp HHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHH-------HHTCCCCHHHHHHHHHHHHHH-CTTSCTT
T ss_pred hHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHH-------hcCCCCCHHHHHHHHHHhhhh-cccccCc
Confidence 776555566899999996 7999999999999999987765321 112345666666666543321 1111112
Q ss_pred cchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHH
Q 013706 391 GLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 433 (438)
Q Consensus 391 ~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~ 433 (438)
..+..+++.|.......-. ......|+.+|+.+++..+
T Consensus 396 ~~~i~lld~a~~~~~~~~~-----~~~~~~v~~~di~~~~~~~ 433 (758)
T 1r6b_X 396 DKAIDVIDEAGARARLMPV-----SKRKKTVNVADIESVVARI 433 (758)
T ss_dssp HHHHHHHHHHHHHHHHSSS-----CCCCCSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccc-----cccCCccCHHHHHHHHHHh
Confidence 3456677766544321100 0122457888888877664
No 141
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.79 E-value=2.4e-19 Score=167.14 Aligned_cols=124 Identities=20% Similarity=0.223 Sum_probs=114.4
Q ss_pred CcHHHHHHHcCCHHHHHHHhcCCCCCCccccc------ccCCCChHHHHHHHc---CCHHHHHHHHHCCCCcccccCCCC
Q 013706 5 QTPLHVSAGYNKAEIVKSLLEWPGNDKVELEA------QNMYGETPLHMAAKN---GCNEAAKLLLAHGAFIEAKANNGM 75 (438)
Q Consensus 5 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~------~d~~g~t~L~~A~~~---g~~~~v~~Ll~~g~~~~~~~~~g~ 75 (438)
.++||.|+..|+.+.++.|+. .+++++. .+..|+||||+|+.. |+.+++++|+++|+++|.+|..|+
T Consensus 152 ~~~L~~A~~~g~~~~v~~ll~----~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~ 227 (301)
T 2b0o_E 152 PQRLWTAICNRDLLSVLEAFA----NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN 227 (301)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH----TTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCC
T ss_pred HHHHhhhhhccCHHHHHHHHh----cCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCC
Confidence 467999999999999999998 6788887 688999999999997 899999999999999999999999
Q ss_pred cHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706 76 TPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137 (438)
Q Consensus 76 t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~ 137 (438)
||||+|+ ..|+.+++++|+++|++++.+|.+|.||| +.|...++.+++++|+..+++
T Consensus 228 TpLh~A~----~~g~~~~v~~Ll~~gad~~~~d~~G~TpL-~~A~~~~~~~iv~~Ll~~ga~ 284 (301)
T 2b0o_E 228 TALHYAA----LYNQPDCLKLLLKGRALVGTVNEAGETAL-DIARKKHHKECEELLEQAQAG 284 (301)
T ss_dssp CHHHHHH----HTTCHHHHHHHHHTTCCCSCCCTTSCCHH-HHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHH----HcCCHHHHHHHHHcCCCCCCcCCCCCCHH-HHHHHcCCHHHHHHHHHhcCC
Confidence 9999999 88999999999999999999999999999 666667888999999987654
No 142
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.78 E-value=3.7e-19 Score=169.34 Aligned_cols=130 Identities=30% Similarity=0.330 Sum_probs=118.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
.|.|+||.||..|+.+.|+.|+.. .+.+++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 23 ~~~~~L~~A~~~g~~~~v~~ll~~---~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 99 (351)
T 3utm_A 23 YKKDELLEAARSGNEEKLMALLTP---LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNAC 99 (351)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCT---TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred ccchhHHHHHHcCCHHHHHHHHHh---cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHH
Confidence 367999999999999999999984 68889999999999999999999999999999999999999999999999999
Q ss_pred hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHH
Q 013706 83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRK 140 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~ 140 (438)
..|+.+++++|+++|++++..|..|.||| +.|+..++.+++++|+..+.+...
T Consensus 100 ----~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~ 152 (351)
T 3utm_A 100 ----SYGHYEVTELLLKHGACVNAMDLWQFTPL-HEAASKNRVEVCSLLLSHGADPTL 152 (351)
T ss_dssp ----HTTCHHHHHHHHHTTCCTTCCCTTCCCHH-HHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred ----HCCCHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHHcCCCCcc
Confidence 88999999999999999999999999999 656667889999999988776443
No 143
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.78 E-value=5.8e-19 Score=176.61 Aligned_cols=200 Identities=16% Similarity=0.189 Sum_probs=132.2
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCC---CCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEE
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGA---RRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTE 236 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 236 (438)
.|++++|.+.+++.+.+++...... .+..+...+. ..+.++||+||||||||++|+++|++++. ++++
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~--~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~-------~~i~ 107 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENS--KKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY-------DILE 107 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHH--HHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC-------EEEE
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhh--chhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC-------CEEE
Confidence 5889999999999999887643211 1111222211 24578999999999999999999998854 7889
Q ss_pred eecccccccccccchH-------HHHHHHHH--------ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCC
Q 013706 237 VQRTDLVGEFVGHTGP-------KTRRRIKE--------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK 301 (438)
Q Consensus 237 ~~~~~~~~~~~g~~~~-------~~~~~~~~--------a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~ 301 (438)
+++++.....+.+... .+...|.. ..++||||||+|.+....+ ..++.|+..++...
T Consensus 108 in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~--------~~l~~L~~~l~~~~ 179 (516)
T 1sxj_A 108 QNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR--------GGVGQLAQFCRKTS 179 (516)
T ss_dssp ECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST--------THHHHHHHHHHHCS
T ss_pred EeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH--------HHHHHHHHHHHhcC
Confidence 9988765543221110 11222322 3458999999999987544 23566777766544
Q ss_pred --EEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHH
Q 013706 302 --VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKE 379 (438)
Q Consensus 302 --v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (438)
+++++++...+. -+++++| ...+.|++|+.+++.+++...+.+.. . .++++++..++...
T Consensus 180 ~~iIli~~~~~~~~------l~~l~~r-~~~i~f~~~~~~~~~~~L~~i~~~~~-------~----~i~~~~l~~la~~s 241 (516)
T 1sxj_A 180 TPLILICNERNLPK------MRPFDRV-CLDIQFRRPDANSIKSRLMTIAIREK-------F----KLDPNVIDRLIQTT 241 (516)
T ss_dssp SCEEEEESCTTSST------TGGGTTT-SEEEECCCCCHHHHHHHHHHHHHHHT-------C----CCCTTHHHHHHHHT
T ss_pred CCEEEEEcCCCCcc------chhhHhc-eEEEEeCCCCHHHHHHHHHHHHHHcC-------C----CCCHHHHHHHHHHc
Confidence 344333222111 2445544 47999999999999999988877542 2 24556777777654
Q ss_pred hhHhhhccccccchHHHHHHHH
Q 013706 380 TTEKQRREMNGGLVDPMLVNAR 401 (438)
Q Consensus 380 ~~~~~~~~~n~~~l~~~~~~a~ 401 (438)
.||.|.+.++++.+.
T Consensus 242 -------~GdiR~~i~~L~~~~ 256 (516)
T 1sxj_A 242 -------RGDIRQVINLLSTIS 256 (516)
T ss_dssp -------TTCHHHHHHHHTHHH
T ss_pred -------CCcHHHHHHHHHHHH
Confidence 678888888887664
No 144
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.78 E-value=6.9e-19 Score=167.47 Aligned_cols=106 Identities=35% Similarity=0.504 Sum_probs=100.3
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
..|+||||+||..|+.++|++|++ .|++++..|..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|
T Consensus 56 ~~g~t~L~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A 131 (351)
T 3utm_A 56 GRKSTPLHLAAGYNRVRIVQLLLQ----HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEA 131 (351)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 368999999999999999999999 7899999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCCccc
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l 115 (438)
+ ..|+.+++++|+++|++++..+..|.+|+
T Consensus 132 ~----~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l 161 (351)
T 3utm_A 132 A----SKNRVEVCSLLLSHGADPTLVNCHGKSAV 161 (351)
T ss_dssp H----HTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred H----HcCCHHHHHHHHHcCCCCccccCCCCcch
Confidence 9 88999999999999999998887776666
No 145
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.78 E-value=1.8e-18 Score=155.91 Aligned_cols=186 Identities=10% Similarity=0.008 Sum_probs=125.4
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHH-HccCcEEEEeCcccccC
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIK-EAEGGILFVDEAYRLIP 276 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~a~~~il~iDEid~l~~ 276 (438)
.+.+++|+||||||||++|+++++.+...+ ..++.+++.++...+.. .+. ...+.+|||||+|.+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~----~~~~~~~~~~~~~~~~~--------~~~~~~~~~vliiDe~~~~~~ 118 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELE----RRSFYIPLGIHASISTA--------LLEGLEQFDLICIDDVDAVAG 118 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTT----CCEEEEEGGGGGGSCGG--------GGTTGGGSSEEEEETGGGGTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcC----CeEEEEEHHHHHHHHHH--------HHHhccCCCEEEEeccccccC
Confidence 467899999999999999999999987643 26677777665543211 111 13568999999999875
Q ss_pred CCCCCCchhHHHHHHHHHhh-ccCCCE-EEEEecCChhHHHHhhhCcCccCCCC--cceeCCCCCHHHHHHHHHHHHhcc
Q 013706 277 MQKADDKDYGIEALEEIMSV-MDGGKV-VVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQ 352 (438)
Q Consensus 277 ~~~~~~~~~~~~~~~~ll~~-~~~~~v-~vi~~~~~~~~~~~~~~~p~l~~R~~--~~i~~~~~~~~e~~~il~~~l~~~ 352 (438)
... ....+..++.. .+.+.+ +++.++...... ...++++.+||. ..+.|++|+.+++.+++..++.+.
T Consensus 119 ~~~------~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~--~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~ 190 (242)
T 3bos_A 119 HPL------WEEAIFDLYNRVAEQKRGSLIVSASASPMEA--GFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMR 190 (242)
T ss_dssp CHH------HHHHHHHHHHHHHHHCSCEEEEEESSCTTTT--TCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHT
T ss_pred CHH------HHHHHHHHHHHHHHcCCCeEEEEcCCCHHHH--HHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHc
Confidence 320 11222222222 233555 444443322111 111477888885 899999999999999999988753
Q ss_pred ccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHH
Q 013706 353 TEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 431 (438)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~ 431 (438)
. ..++++++..+...+ .||.|.+.++++++...+. .+...|+.+|+.++++
T Consensus 191 ~-----------~~~~~~~~~~l~~~~-------~g~~r~l~~~l~~~~~~a~----------~~~~~It~~~v~~~l~ 241 (242)
T 3bos_A 191 G-----------LQLPEDVGRFLLNRM-------ARDLRTLFDVLDRLDKASM----------VHQRKLTIPFVKEMLR 241 (242)
T ss_dssp T-----------CCCCHHHHHHHHHHT-------TTCHHHHHHHHHHHHHHHH----------HHTCCCCHHHHHHHHT
T ss_pred C-----------CCCCHHHHHHHHHHc-------cCCHHHHHHHHHHHHHHHH----------HhCCCCcHHHHHHHhh
Confidence 2 245677777777643 7899999999999887751 1224699999988864
No 146
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.77 E-value=2e-19 Score=160.97 Aligned_cols=111 Identities=23% Similarity=0.197 Sum_probs=101.3
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCccccc-CCCCcHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA-NNGMTPLHL 80 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~ 80 (438)
..|+||||+||..|+.+++++|++ .|+++|.+|..|+||||+|+..|+.+++++|+++|++++.++ ..|+||||+
T Consensus 52 ~~g~tpLh~A~~~g~~~~v~~Ll~----~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~ 127 (229)
T 2vge_A 52 EEGITALHNAICGANYSIVDFLIT----AGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEK 127 (229)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGG
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHH
Confidence 479999999999999999999999 689999999999999999999999999999999999999986 699999999
Q ss_pred H--hhcccccCcHHHHHHHHhCCCCCcccCCCCCcccccccc
Q 013706 81 S--VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSN 120 (438)
Q Consensus 81 A--~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~ 120 (438)
| + ..++.+++++|+++|++++..|..|.+|++.++.
T Consensus 128 A~a~----~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~ 165 (229)
T 2vge_A 128 CDPY----REGYADCATYLADVEQSMGLMNSGAVYALWDYSA 165 (229)
T ss_dssp CCTT----STTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCC
T ss_pred HHHH----hcChHHHHHHHHHcCCCcccccCCchHHHHHHhh
Confidence 9 7 8899999999999999988888777777743333
No 147
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.77 E-value=2.3e-18 Score=166.48 Aligned_cols=226 Identities=13% Similarity=0.115 Sum_probs=153.7
Q ss_pred HhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHc---CCcC-CCCEEE
Q 013706 161 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV---GILP-TDRVTE 236 (438)
Q Consensus 161 l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~---~~~~-~~~~~~ 236 (438)
.++++|.+...+.+.+++.... ....+.+++|+||||||||++|+.+++.+... .... ..+++.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~------------~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~ 86 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFV------------KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAY 86 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHH------------TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEE
T ss_pred CCCCCChHHHHHHHHHHHHHHH------------cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEE
Confidence 3789999999888887765432 12356789999999999999999999988432 0011 336778
Q ss_pred eeccccc-----------ccc-------cccchHH-HHHHHHHc--cCcEEEEeCcccccCCC-CCCCchhHHHH-HHHH
Q 013706 237 VQRTDLV-----------GEF-------VGHTGPK-TRRRIKEA--EGGILFVDEAYRLIPMQ-KADDKDYGIEA-LEEI 293 (438)
Q Consensus 237 ~~~~~~~-----------~~~-------~g~~~~~-~~~~~~~a--~~~il~iDEid~l~~~~-~~~~~~~~~~~-~~~l 293 (438)
+++.... ..+ .|..... +..++... .++||||||+|.+.... + .+ +..|
T Consensus 87 i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~--------~~~l~~l 158 (384)
T 2qby_B 87 VNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGG--------DIVLYQL 158 (384)
T ss_dssp EEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTS--------HHHHHHH
T ss_pred EECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCC--------ceeHHHH
Confidence 8765432 111 1222222 33333332 23499999999997653 3 44 6666
Q ss_pred HhhccCCCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHH
Q 013706 294 MSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA 373 (438)
Q Consensus 294 l~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 373 (438)
+... .++.+|++++..+.... .++++++||...+.|++|+.+++.+|+..++.+. +. ...++++++.
T Consensus 159 ~~~~--~~~~iI~~t~~~~~~~~--l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~--------~~-~~~~~~~~~~ 225 (384)
T 2qby_B 159 LRSD--ANISVIMISNDINVRDY--MEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYG--------LI-KGTYDDEILS 225 (384)
T ss_dssp HTSS--SCEEEEEECSSTTTTTT--SCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHT--------SC-TTSCCSHHHH
T ss_pred hcCC--cceEEEEEECCCchHhh--hCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhh--------cc-cCCcCHHHHH
Confidence 6666 67888888776543211 2788889997899999999999999999988631 10 1235566777
Q ss_pred HHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706 374 ALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 434 (438)
Q Consensus 374 ~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~ 434 (438)
.+..... ..+||.|.+.++++.|...+. +...|+.+|+..+++.+.
T Consensus 226 ~i~~~~~----~~~G~~r~a~~~l~~a~~~a~-----------~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 226 YIAAISA----KEHGDARKAVNLLFRAAQLAS-----------GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHHHHHH----TTCCCHHHHHHHHHHHHHHTT-----------SSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHH----hccCCHHHHHHHHHHHHHHhc-----------CCCccCHHHHHHHHHHHh
Confidence 6666553 225889999999999987762 234688888888887654
No 148
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.77 E-value=1e-18 Score=164.91 Aligned_cols=185 Identities=18% Similarity=0.145 Sum_probs=130.3
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 239 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 239 (438)
.|++++|++.+++.+.+++.. ...+..+|++||||||||++|+++++.++. +++++++
T Consensus 24 ~~~~ivg~~~~~~~l~~~l~~---------------~~~~~~~L~~G~~G~GKT~la~~la~~l~~-------~~~~i~~ 81 (324)
T 3u61_B 24 TIDECILPAFDKETFKSITSK---------------GKIPHIILHSPSPGTGKTTVAKALCHDVNA-------DMMFVNG 81 (324)
T ss_dssp STTTSCCCHHHHHHHHHHHHT---------------TCCCSEEEECSSTTSSHHHHHHHHHHHTTE-------EEEEEET
T ss_pred CHHHHhCcHHHHHHHHHHHHc---------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCC-------CEEEEcc
Confidence 588999999999888887541 224455788899999999999999998864 7888887
Q ss_pred ccccccccccchHHHHHHHHH---c-----cCcEEEEeCccccc-CCCCCCCchhHHHHHHHHHhhccC--CCEEEEEec
Q 013706 240 TDLVGEFVGHTGPKTRRRIKE---A-----EGGILFVDEAYRLI-PMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAG 308 (438)
Q Consensus 240 ~~~~~~~~g~~~~~~~~~~~~---a-----~~~il~iDEid~l~-~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~ 308 (438)
++.. ...++..+.. . .++||||||+|.+. . ...+.|+..++. ..+.+|+++
T Consensus 82 ~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~-----------~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 82 SDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLA-----------ESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp TTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGH-----------HHHHHHHHHHHHHGGGCEEEEEE
T ss_pred cccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcH-----------HHHHHHHHHHHhCCCCcEEEEEe
Confidence 6632 2233332222 1 35899999999997 4 334677777765 456666665
Q ss_pred CChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccH-HHHHHHHHHHhhHhhhcc
Q 013706 309 YSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSM-DAIAALIEKETTEKQRRE 387 (438)
Q Consensus 309 ~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 387 (438)
+... . .+|++++|| .++.|++|+.+++.+|+..++..........+ ..+++ +++..++.. + .
T Consensus 144 n~~~--~---l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~----~~~~~~~~~~~l~~~-~------~ 206 (324)
T 3u61_B 144 NNID--G---IIKPLQSRC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEG----IAIADMKVVAALVKK-N------F 206 (324)
T ss_dssp SSGG--G---SCTTHHHHS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHT----CCBSCHHHHHHHHHH-T------C
T ss_pred CCcc--c---cCHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcC----CCCCcHHHHHHHHHh-C------C
Confidence 5443 2 389999999 68999999999988777665544321111112 33455 777777766 3 7
Q ss_pred ccccchHHHHHHHH
Q 013706 388 MNGGLVDPMLVNAR 401 (438)
Q Consensus 388 ~n~~~l~~~~~~a~ 401 (438)
||.|.+.+.++.+.
T Consensus 207 gd~R~a~~~L~~~~ 220 (324)
T 3u61_B 207 PDFRKTIGELDSYS 220 (324)
T ss_dssp SCTTHHHHHHHHHG
T ss_pred CCHHHHHHHHHHHh
Confidence 89999999998886
No 149
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.77 E-value=8.8e-19 Score=157.37 Aligned_cols=129 Identities=24% Similarity=0.331 Sum_probs=110.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
.|+||||+|+..|+.+++++|++ .|++++..|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+
T Consensus 75 ~~~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~ 150 (240)
T 3eu9_A 75 LNSTPLHWATRQGHLSMVVQLMK----YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAA 150 (240)
T ss_dssp TTBCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred cCCChhHHHHHcCCHHHHHHHHH----cCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHH
Confidence 48899999999999999999998 68889999999999999999999999999999999999999999999999998
Q ss_pred hcccccCc-HHHHHHHHhCCCCCcccCC-CCCccccccccCCCchhHHHHHHhccchHHH
Q 013706 83 WYSIRSED-YATVKTLLEYNADCSAKDN-EGKTPLDHLSNGPGSAKLRELLLWHSEEQRK 140 (438)
Q Consensus 83 ~~~~~~~~-~~~~~~Ll~~ga~~~~~d~-~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~ 140 (438)
..++ .+++++|++.|++++..+. .|.||| +.|+..+..+++++|+..+.+...
T Consensus 151 ----~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L-~~A~~~~~~~~v~~Ll~~g~~~~~ 205 (240)
T 3eu9_A 151 ----YRTHSVDPTRLLLTFNVSVNLGDKYHKNTAL-HWAVLAGNTTVISLLLEAGANVDA 205 (240)
T ss_dssp ----HHCCSSTTHHHHHHTTCCTTCCCTTTCCCHH-HHHHHHTCHHHHHHHHHHTCCTTC
T ss_pred ----HhCChHHHHHHHHhcCCCcchhhccCCCcHH-HHHHHcCCHHHHHHHHHcCCCCCC
Confidence 3344 6788888888999888886 888999 556667788888888887766543
No 150
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.77 E-value=8.8e-19 Score=133.29 Aligned_cols=92 Identities=50% Similarity=0.711 Sum_probs=85.0
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccc
Q 013706 40 YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLS 119 (438)
Q Consensus 40 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a 119 (438)
+|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+ ..++.+++++|+++|++++.+|..|+||| +.|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~----~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l-~~A 75 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA----RNGHLEVVKLLLEAGADVNAKDKNGRTPL-HLA 75 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCCccCCCCCCHH-HHH
Confidence 4899999999999999999999999999999999999999999 88999999999999999999999999999 666
Q ss_pred cCCCchhHHHHHHhccc
Q 013706 120 NGPGSAKLRELLLWHSE 136 (438)
Q Consensus 120 ~~~~~~~~~~lL~~~~~ 136 (438)
+..++.+++++|+..|+
T Consensus 76 ~~~~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 76 ARNGHLEVVKLLLEAGA 92 (93)
T ss_dssp HHTTCHHHHHHHHHTTC
T ss_pred HHcCCHHHHHHHHHcCC
Confidence 66788999999998775
No 151
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.77 E-value=3e-17 Score=147.99 Aligned_cols=202 Identities=17% Similarity=0.184 Sum_probs=138.9
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC-------
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------- 232 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~------- 232 (438)
.+++++|.+...+.+.+.+.. ...+..++|+||||||||++|+.+++.+.........
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~---------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSL---------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 85 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHH---------------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHH
T ss_pred cHHHHhCcHHHHHHHHHHHHc---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHH
Confidence 467899999998888876432 1234579999999999999999999988643221111
Q ss_pred ----------CEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHh
Q 013706 233 ----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS 295 (438)
Q Consensus 233 ----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~ 295 (438)
.++.+.... ......++.+++.. .+.+|||||+|.+.+ ..++.|+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~-----------~~~~~l~~ 148 (250)
T 1njg_A 86 CREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALLK 148 (250)
T ss_dssp HHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH-----------HHHHHHHH
T ss_pred HHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH-----------HHHHHHHH
Confidence 112221111 01223455555543 247999999999864 34577777
Q ss_pred hccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHH
Q 013706 296 VMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA 373 (438)
Q Consensus 296 ~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 373 (438)
.++. ..+.+|++++.... .++++.+|+ ..+.|++|+.+++.+++..++.+.. ..++++++.
T Consensus 149 ~l~~~~~~~~~i~~t~~~~~-----~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~-----------~~~~~~~~~ 211 (250)
T 1njg_A 149 TLEEPPEHVKFLLATTDPQK-----LPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEH-----------IAHEPRALQ 211 (250)
T ss_dssp HHHSCCTTEEEEEEESCGGG-----SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTT-----------CCBCHHHHH
T ss_pred HHhcCCCceEEEEEeCChHh-----CCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcC-----------CCCCHHHHH
Confidence 7765 45677777655432 267788886 8999999999999999999887532 235667777
Q ss_pred HHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHH
Q 013706 374 ALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGL 430 (438)
Q Consensus 374 ~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~ 430 (438)
.+.... .||.+.+.++++++.... ...|+.+|+++++
T Consensus 212 ~l~~~~-------~G~~~~~~~~~~~~~~~~-------------~~~i~~~~v~~~~ 248 (250)
T 1njg_A 212 LLARAA-------EGSLRDALSLTDQAIASG-------------DGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHH-------TTCHHHHHHHHHHHHTTT-------------TSSBCHHHHHHHS
T ss_pred HHHHHc-------CCCHHHHHHHHHHHHhcc-------------CceecHHHHHHHh
Confidence 777654 688899999988874332 1268999998875
No 152
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.76 E-value=9.1e-19 Score=165.78 Aligned_cols=228 Identities=14% Similarity=0.094 Sum_probs=139.3
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..+++++|++.+++.+...+. ...++||+||||||||++|+++|+.+.. +++.++
T Consensus 24 ~~~~~i~g~~~~~~~l~~~l~------------------~~~~vll~G~pGtGKT~la~~la~~~~~-------~~~~i~ 78 (331)
T 2r44_A 24 EVGKVVVGQKYMINRLLIGIC------------------TGGHILLEGVPGLAKTLSVNTLAKTMDL-------DFHRIQ 78 (331)
T ss_dssp HHTTTCCSCHHHHHHHHHHHH------------------HTCCEEEESCCCHHHHHHHHHHHHHTTC-------CEEEEE
T ss_pred HhccceeCcHHHHHHHHHHHH------------------cCCeEEEECCCCCcHHHHHHHHHHHhCC-------CeEEEe
Confidence 356789999998887766432 1358999999999999999999998754 566665
Q ss_pred cc------cccccccccchHHHHHHHHHc----cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC--------
Q 013706 239 RT------DLVGEFVGHTGPKTRRRIKEA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-------- 300 (438)
Q Consensus 239 ~~------~~~~~~~g~~~~~~~~~~~~a----~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-------- 300 (438)
+. ++.+....... ...+... .++||||||+|.+.+ .+++.|++.|+++
T Consensus 79 ~~~~~~~~~l~g~~~~~~~---~~~~~~~~g~l~~~vl~iDEi~~~~~-----------~~~~~Ll~~l~~~~~~~~g~~ 144 (331)
T 2r44_A 79 FTPDLLPSDLIGTMIYNQH---KGNFEVKKGPVFSNFILADEVNRSPA-----------KVQSALLECMQEKQVTIGDTT 144 (331)
T ss_dssp CCTTCCHHHHHEEEEEETT---TTEEEEEECTTCSSEEEEETGGGSCH-----------HHHHHHHHHHHHSEEEETTEE
T ss_pred cCCCCChhhcCCceeecCC---CCceEeccCcccccEEEEEccccCCH-----------HHHHHHHHHHhcCceeeCCEE
Confidence 52 12222110000 0000011 137999999999875 3447777777642
Q ss_pred -----CEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhcccccccc-----------cccccc
Q 013706 301 -----KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLL-----------YGFKLH 364 (438)
Q Consensus 301 -----~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~-----------~~~~~~ 364 (438)
.+++|+++++.........+|++++||+..+.+++|+.+++.+|++..+......... ....-.
T Consensus 145 ~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 224 (331)
T 2r44_A 145 YPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINK 224 (331)
T ss_dssp EECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHT
T ss_pred EECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhcc
Confidence 4567777664432111113789999998889999999999999999987653210000 000012
Q ss_pred ccccHHHHHHHHHHHhhHh-------------hhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHH
Q 013706 365 SSCSMDAIAALIEKETTEK-------------QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLK 431 (438)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~-------------~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~ 431 (438)
..++++.+..+........ ...+.+.|.+.+++..|...+.. .+...|+.+|+.+++.
T Consensus 225 v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l---------~g~~~v~~~dv~~~~~ 295 (331)
T 2r44_A 225 VTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFF---------NNRDYVLPEDIKEVAY 295 (331)
T ss_dssp CBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHH---------TTCSBCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHH---------cCCCCCCHHHHHHHHH
Confidence 3456666666554332110 11123567777777766655422 1224578888888887
Q ss_pred HHH
Q 013706 432 LLL 434 (438)
Q Consensus 432 ~~~ 434 (438)
.+.
T Consensus 296 ~vl 298 (331)
T 2r44_A 296 DIL 298 (331)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 153
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.76 E-value=1.9e-18 Score=155.19 Aligned_cols=126 Identities=25% Similarity=0.339 Sum_probs=88.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCccccc-CCCCcHHHHH
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKA-NNGMTPLHLS 81 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A 81 (438)
.|.||||.|+..|+.+++++|++ .|++++..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|
T Consensus 8 ~~~~~l~~A~~~g~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A 83 (240)
T 3eu9_A 8 YSTWDIVKATQYGIYERCRELVE----AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA 83 (240)
T ss_dssp GGGCCHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred ccchHHHHHHHcCChHHHHHHHH----cCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence 46677777777777777777777 566677777777777777777777777777777777666443 3477777777
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccch
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEE 137 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~ 137 (438)
+ ..++.+++++|++.|++++..+..|.||+ +.|+..+..+++++|+..+.+
T Consensus 84 ~----~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~~~~~Ll~~~~~ 134 (240)
T 3eu9_A 84 T----RQGHLSMVVQLMKYGADPSLIDGEGCSCI-HLAAQFGHTSIVAYLIAKGQD 134 (240)
T ss_dssp H----HHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHTTCC
T ss_pred H----HcCCHHHHHHHHHcCCCCcccCCCCCCHH-HHHHHcCHHHHHHHHHhcCCC
Confidence 7 66777777777777777777777777777 444445666677777666544
No 154
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.76 E-value=5.5e-19 Score=153.40 Aligned_cols=167 Identities=20% Similarity=0.274 Sum_probs=118.1
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCc---CCCCEE
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGIL---PTDRVT 235 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~---~~~~~~ 235 (438)
..+++++|.+...+++.+.+. ...+.+++|+||||||||++|+.+++.+...... ...+++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~----------------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T 1jbk_A 19 GKLDPVIGRDEEIRRTIQVLQ----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL 82 (195)
T ss_dssp TCSCCCCSCHHHHHHHHHHHT----------------SSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred ccccccccchHHHHHHHHHHh----------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEE
Confidence 357889999987777776532 1356789999999999999999999988642221 134667
Q ss_pred Eeeccccc--ccccccchHHHHHHHHHc----cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecC
Q 013706 236 EVQRTDLV--GEFVGHTGPKTRRRIKEA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY 309 (438)
Q Consensus 236 ~~~~~~~~--~~~~g~~~~~~~~~~~~a----~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~ 309 (438)
.+++..+. ..+.|.....+...+... .+.||||||+|.+.+.+...... .+.+.|...++.+.+.+|++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~---~~~~~l~~~~~~~~~~~i~~~~ 159 (195)
T 1jbk_A 83 ALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAM---DAGNMLKPALARGELHCVGATT 159 (195)
T ss_dssp EECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CC---CCHHHHHHHHHTTSCCEEEEEC
T ss_pred EeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchH---HHHHHHHHhhccCCeEEEEeCC
Confidence 77776654 345555556666666532 34699999999998654321111 2335556666778888898888
Q ss_pred ChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHH
Q 013706 310 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKIL 345 (438)
Q Consensus 310 ~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il 345 (438)
..........++++++||. .+.|++|+.+++.+|+
T Consensus 160 ~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 160 LDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 7776665556899999996 7999999999998875
No 155
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.76 E-value=7e-18 Score=176.78 Aligned_cols=202 Identities=19% Similarity=0.236 Sum_probs=134.9
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHc---CCcCCCCEEE
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMV---GILPTDRVTE 236 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~---~~~~~~~~~~ 236 (438)
.++.++|.+..++++.+++. .....++||+||||||||++|+++|+.+... .......++.
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~----------------~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLS----------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHH----------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred CCCCccCchHHHHHHHHHHh----------------CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE
Confidence 57889999998888877643 2356789999999999999999999998432 2223446666
Q ss_pred eecccccccccccchHHHHHHHHHcc---CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhH
Q 013706 237 VQRTDLVGEFVGHTGPKTRRRIKEAE---GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPM 313 (438)
Q Consensus 237 ~~~~~~~~~~~g~~~~~~~~~~~~a~---~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~ 313 (438)
++. ..+|.|+.+..++.+|..+. ++||||| .. ..+.+.|+..++.+.+.+|++|+.+.+
T Consensus 242 ~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD----~~-----------~~~~~~L~~~l~~~~v~~I~at~~~~~ 303 (758)
T 3pxi_A 242 LDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID----AA-----------IDASNILKPSLARGELQCIGATTLDEY 303 (758)
T ss_dssp C-------------CTTHHHHHHHHHTCCCCEEEEC----C-------------------CCCTTSSSCEEEEECCTTTT
T ss_pred ecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc----Cc-----------hhHHHHHHHHHhcCCEEEEeCCChHHH
Confidence 666 56688888888888888764 6999999 11 134488999999999999999999987
Q ss_pred HHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccch
Q 013706 314 KRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLV 393 (438)
Q Consensus 314 ~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l 393 (438)
...+..+|++++|| ..|.|+.|+.+++.+|++.++.+... .....++++++..+...... ........+..
T Consensus 304 ~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~-------~~~~~i~~~al~~~~~~s~~-~i~~~~~p~~a 374 (758)
T 3pxi_A 304 RKYIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEA-------HHRVSITDDAIEAAVKLSDR-YISDRFLPDKA 374 (758)
T ss_dssp HHHHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGG-------GSSCSCCHHHHHHHHHHHHH-SSCCSCTTHHH
T ss_pred HHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHH-------hcCCCCCHHHHHHHHHHhhc-ccccCcCCcHH
Confidence 77667799999999 67999999999999999987765431 12234566776666554321 11111122344
Q ss_pred HHHHHHHHHHh
Q 013706 394 DPMLVNARENL 404 (438)
Q Consensus 394 ~~~~~~a~~~~ 404 (438)
..+++.|...+
T Consensus 375 i~ll~~a~~~~ 385 (758)
T 3pxi_A 375 IDLIDEAGSKV 385 (758)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55566555443
No 156
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.76 E-value=5.4e-19 Score=144.68 Aligned_cols=93 Identities=20% Similarity=0.262 Sum_probs=89.1
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCC-CChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMY-GETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHL 80 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 80 (438)
..|+||||+||. |+.+++++|++ .+++++.+|.. |+||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus 43 ~~g~t~L~~A~~-~~~~~v~~Ll~----~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~ 117 (136)
T 1d9s_A 43 RFGRRPIQVMMM-GSAQVAELLLL----HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDL 117 (136)
T ss_dssp TTCCTTTTTSTT-SCHHHHHHHHH----HTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHH
T ss_pred CCCCCHHHHHHc-CCHHHHHHHHH----CCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHH
Confidence 468999999999 99999999999 78999999999 9999999999999999999999999999999999999999
Q ss_pred HhhcccccCcHHHHHHHHhCCCC
Q 013706 81 SVWYSIRSEDYATVKTLLEYNAD 103 (438)
Q Consensus 81 A~~~~~~~~~~~~~~~Ll~~ga~ 103 (438)
|+ ..++.+++++|+++|+|
T Consensus 118 A~----~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 118 AE----EQGHRDIARYLHAATGD 136 (136)
T ss_dssp HH----HHTCHHHHHHHHHHHCC
T ss_pred HH----HcCCHHHHHHHHHcCCC
Confidence 99 88999999999999875
No 157
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.76 E-value=1.3e-18 Score=167.47 Aligned_cols=125 Identities=24% Similarity=0.263 Sum_probs=93.4
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCC---CCcccccCCCCcHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHG---AFIEAKANNGMTPL 78 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g---~~~~~~~~~g~t~L 78 (438)
..|+||||+||..|+.++|++|++ .|++++..|..|+||||+|+..|+.+++++|++++ ++++..|..|.|||
T Consensus 164 ~~g~TpL~~A~~~g~~~iv~~Ll~----~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L 239 (373)
T 2fo1_E 164 CDENTPLMLAVLARRRRLVAYLMK----AGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTAL 239 (373)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHH
T ss_pred CCCCCHHHHHHHcChHHHHHHHHH----CCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHH
Confidence 367888888888888888888888 57777888888888888888888888888888776 67777777777888
Q ss_pred HHHhhcccccC---cHHHHHHHHhCCCCCcc--------cCCCCCccccccccCCCchhHHHHHHhcc
Q 013706 79 HLSVWYSIRSE---DYATVKTLLEYNADCSA--------KDNEGKTPLDHLSNGPGSAKLRELLLWHS 135 (438)
Q Consensus 79 ~~A~~~~~~~~---~~~~~~~Ll~~ga~~~~--------~d~~g~t~l~~~a~~~~~~~~~~lL~~~~ 135 (438)
|+|+ ..+ +.+++++|+++|++++. .|..|+||| |.|+..++.+++++|+..+
T Consensus 240 ~~A~----~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~L-h~A~~~g~~~~v~~Ll~~~ 302 (373)
T 2fo1_E 240 MIVA----HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL-HYAAQVSNMPIVKYLVGEK 302 (373)
T ss_dssp HHHH----HSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTH-HHHHSSCCHHHHHHHHHHS
T ss_pred HHHH----HhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHH-HHHHHhCCHHHHHHHHHhc
Confidence 7777 444 67777777777777765 456777777 4444556667777776543
No 158
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.75 E-value=3.9e-18 Score=139.52 Aligned_cols=92 Identities=33% Similarity=0.452 Sum_probs=87.5
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
..|+||||+||..|+.+++++|++ .|++++..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 45 ~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A 120 (136)
T 2jab_A 45 EYGLTPLYLATAHGHLEIVEVLLK----NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS 120 (136)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHH
Confidence 368999999999999999999999 6899999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCcHHHHHHHHhCC
Q 013706 82 VWYSIRSEDYATVKTLLEYN 101 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~g 101 (438)
+ ..++.+++++|+++|
T Consensus 121 ~----~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 121 I----GNGNEDLAEILQKLN 136 (136)
T ss_dssp H----HTTCHHHHHHHHHC-
T ss_pred H----HCCCHHHHHHHHHcC
Confidence 9 889999999999875
No 159
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.75 E-value=8.6e-18 Score=178.02 Aligned_cols=193 Identities=21% Similarity=0.234 Sum_probs=126.9
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcC---CcCCCCEE
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVG---ILPTDRVT 235 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~---~~~~~~~~ 235 (438)
..++.++|.+...+++.+++. ...+.+++|+||||||||++|+++|+.+.... .....+++
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~----------------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 230 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILL----------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIV 230 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHH----------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEE
T ss_pred CCCcccCCcHHHHHHHHHHHh----------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEE
Confidence 467889999987777776532 23567899999999999999999999885421 12245788
Q ss_pred Eeeccccc--ccccccchHHHHHHHHHcc----CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecC
Q 013706 236 EVQRTDLV--GEFVGHTGPKTRRRIKEAE----GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY 309 (438)
Q Consensus 236 ~~~~~~~~--~~~~g~~~~~~~~~~~~a~----~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~ 309 (438)
.++++.+. ..+.|+.+..+..+|..+. ++||||||+|.+.+..... ....+.+.|...++.+.+.+|++|+
T Consensus 231 ~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~---g~~~~~~~L~~~l~~~~i~~I~at~ 307 (854)
T 1qvr_A 231 SLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE---GAVDAGNMLKPALARGELRLIGATT 307 (854)
T ss_dssp EECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC----------------------HHHHHTTCCCEEEEEC
T ss_pred EeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc---chHHHHHHHHHHHhCCCeEEEEecC
Confidence 88888876 5688888888988888763 4699999999998654321 1234567788888889999999998
Q ss_pred ChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHH
Q 013706 310 SEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKE 379 (438)
Q Consensus 310 ~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (438)
...... +..+|+|++||. .+.|++|+.+++.+|++.++..... .-...++++++..+....
T Consensus 308 ~~~~~~-~~~d~aL~rRf~-~i~l~~p~~~e~~~iL~~~~~~~~~-------~~~~~i~~~al~~~~~ls 368 (854)
T 1qvr_A 308 LDEYRE-IEKDPALERRFQ-PVYVDEPTVEETISILRGLKEKYEV-------HHGVRISDSAIIAAATLS 368 (854)
T ss_dssp HHHHHH-HTTCTTTCSCCC-CEEECCCCHHHHHHHHHHHHHHHHH-------HTTCEECHHHHHHHHHHH
T ss_pred chHHhh-hccCHHHHhCCc-eEEeCCCCHHHHHHHHHhhhhhhhh-------hcCCCCCHHHHHHHHHHH
Confidence 877655 566999999996 4999999999999999887765421 112335566666655543
No 160
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.75 E-value=1e-17 Score=157.66 Aligned_cols=189 Identities=25% Similarity=0.277 Sum_probs=133.2
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|++++|++.+++.+.+++. ....++++|+||||||||++|+++++.+...+ ...+++.++
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~----------------~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~--~~~~~~~~~ 75 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVE----------------RKNIPHLLFSGPPGTGKTATAIALARDLFGEN--WRDNFIEMN 75 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTT----------------TTCCCCEEEESSSSSSHHHHHHHHHHHHHTTC--HHHHCEEEE
T ss_pred CCHHHHhCCHHHHHHHHHHHh----------------CCCCCeEEEECcCCcCHHHHHHHHHHHhcCCc--ccCCeEEEe
Confidence 357889999999888876532 12345699999999999999999999874221 112567777
Q ss_pred cccccccccccchHHHHHHHH-----HccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCCh
Q 013706 239 RTDLVGEFVGHTGPKTRRRIK-----EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSE 311 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~~-----~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~ 311 (438)
+++..+. ......+..... ...+.||||||+|.+.+ ...+.|+..++. ..+++|++++..
T Consensus 76 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~L~~~le~~~~~~~~i~~~~~~ 142 (319)
T 2chq_A 76 ASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA-----------DAQAALRRTMEMYSKSCRFILSCNYV 142 (319)
T ss_dssp TTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH-----------HHHHTTGGGTSSSSSSEEEEEEESCG
T ss_pred CccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH-----------HHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 7654321 111122222221 13468999999999975 344788888886 556777766543
Q ss_pred hHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhcccccc
Q 013706 312 PMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGG 391 (438)
Q Consensus 312 ~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~ 391 (438)
. . ..|++++|+ ..+.|++|+.+++.+++...+.+.. ..++++++..+.. .+ .||.|
T Consensus 143 ~--~---l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~-----------~~i~~~~l~~l~~-~~------~G~~r 198 (319)
T 2chq_A 143 S--R---IIEPIQSRC-AVFRFKPVPKEAMKKRLLEICEKEG-----------VKITEDGLEALIY-IS------GGDFR 198 (319)
T ss_dssp G--G---SCHHHHTTC-EEEECCCCCHHHHHHHHHHHHHTTC-----------CCBCHHHHHHHHH-TT------TTCHH
T ss_pred h--h---cchHHHhhC-eEEEecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHH-Hc------CCCHH
Confidence 3 2 278899998 5899999999999999999887642 2357788887774 34 78888
Q ss_pred chHHHHHHHHH
Q 013706 392 LVDPMLVNARE 402 (438)
Q Consensus 392 ~l~~~~~~a~~ 402 (438)
.+.+.++.+..
T Consensus 199 ~~~~~l~~~~~ 209 (319)
T 2chq_A 199 KAINALQGAAA 209 (319)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887754
No 161
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.75 E-value=1.3e-18 Score=162.29 Aligned_cols=107 Identities=21% Similarity=0.214 Sum_probs=95.0
Q ss_pred CCCcHHHHHHHc---CCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHH
Q 013706 3 MAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLH 79 (438)
Q Consensus 3 ~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 79 (438)
.|+||||+||.. |+.+++++|++ .|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus 189 ~g~t~Lh~A~~~~~~~~~~iv~~Ll~----~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~ 264 (301)
T 2b0o_E 189 PEELVLHLAVKVANQASLPLVDFIIQ----NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALD 264 (301)
T ss_dssp CEECHHHHHHHTCCTTTHHHHHHHHH----HSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHH
T ss_pred CCccHHHHHHHhcccCcHHHHHHHHh----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence 689999999997 89999999999 78999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCc
Q 013706 80 LSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGS 124 (438)
Q Consensus 80 ~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~ 124 (438)
+|+ ..++.+++++|+++|++ .|.||||+ |+..++
T Consensus 265 ~A~----~~~~~~iv~~Ll~~ga~------~g~tpLh~-A~~~g~ 298 (301)
T 2b0o_E 265 IAR----KKHHKECEELLEQAQAG------TFAFPLHV-DYSWVI 298 (301)
T ss_dssp HHH----HHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred HHH----HcCCHHHHHHHHHhcCC------CCCChhHH-HHhcCC
Confidence 999 88999999999998876 58999944 444443
No 162
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.75 E-value=3.9e-17 Score=154.44 Aligned_cols=207 Identities=17% Similarity=0.217 Sum_probs=136.7
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 239 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 239 (438)
.+++.+|++.+++.+...+..-. .+ ..++.+++|+||||||||++|+++|..++. ++...++
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~---~~--------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~-------~~~~~sg 84 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAK---MR--------GEVLDHVLLAGPPGLGKTTLAHIIASELQT-------NIHVTSG 84 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHH---HH--------TCCCCCEEEESSTTSSHHHHHHHHHHHHTC-------CEEEEET
T ss_pred cHHHccCcHHHHHHHHHHHHHHH---hc--------CCCCCeEEEECCCCCcHHHHHHHHHHHhCC-------CEEEEec
Confidence 57888899888777776543221 11 135578999999999999999999998864 3333333
Q ss_pred ccccccccccchHHHHHHHHHc-cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-------------------
Q 013706 240 TDLVGEFVGHTGPKTRRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG------------------- 299 (438)
Q Consensus 240 ~~~~~~~~g~~~~~~~~~~~~a-~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~------------------- 299 (438)
..+. ....+...+... ...|+||||++.+.+.. .+.|+..++.
T Consensus 85 ~~~~------~~~~l~~~~~~~~~~~v~~iDE~~~l~~~~-----------~e~L~~~~~~~~~~i~~~~~~~~~~i~~~ 147 (334)
T 1in4_A 85 PVLV------KQGDMAAILTSLERGDVLFIDEIHRLNKAV-----------EELLYSAIEDFQIDIMIGKGPSAKSIRID 147 (334)
T ss_dssp TTCC------SHHHHHHHHHHCCTTCEEEEETGGGCCHHH-----------HHHHHHHHHTSCCCC--------------
T ss_pred hHhc------CHHHHHHHHHHccCCCEEEEcchhhcCHHH-----------HHHHHHHHHhcccceeeccCccccccccc
Confidence 2221 123344444443 56899999999987521 2333333321
Q ss_pred -CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHH
Q 013706 300 -GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEK 378 (438)
Q Consensus 300 -~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (438)
..+.++.+++.... .++++++||...+.|++|+.+++.+|+++...... ..++++++..++..
T Consensus 148 l~~~~li~at~~~~~-----Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~-----------~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 148 IQPFTLVGATTRSGL-----LSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD-----------VEIEDAAAEMIAKR 211 (334)
T ss_dssp -CCCEEEEEESCGGG-----SCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-----------CCBCHHHHHHHHHT
T ss_pred CCCeEEEEecCCccc-----CCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC-----------CCcCHHHHHHHHHh
Confidence 13566666555432 27889999988899999999999999998876431 34667777777765
Q ss_pred HhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHH
Q 013706 379 ETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 433 (438)
Q Consensus 379 ~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~ 433 (438)
. .|+.|.+.++++++...+..+ +...|+.+++.++++.+
T Consensus 212 ~-------~G~~R~a~~ll~~~~~~a~~~---------~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 212 S-------RGTPRIAIRLTKRVRDMLTVV---------KADRINTDIVLKTMEVL 250 (334)
T ss_dssp S-------TTCHHHHHHHHHHHHHHHHHH---------TCSSBCHHHHHHHHHHH
T ss_pred c-------CCChHHHHHHHHHHHHHHHHc---------CCCCcCHHHHHHHHHHh
Confidence 4 577888889988887655211 12346666666666554
No 163
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.74 E-value=3.5e-18 Score=162.13 Aligned_cols=127 Identities=26% Similarity=0.275 Sum_probs=117.2
Q ss_pred CCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccC-CCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 4 AQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNM-YGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 4 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
|.||||.||..|++++|++||+ .|+++|.++. .|+||||+|+..|+.+++++|+++|++++.++..+.++++.++
T Consensus 25 ~~t~L~~Av~~g~~~~V~~LL~----~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~ 100 (337)
T 4g8k_A 25 DNHLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAA 100 (337)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred CChHHHHHHHcCCHHHHHHHHH----CCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHH
Confidence 6899999999999999999999 7899999876 4999999999999999999999999999999999999999999
Q ss_pred hcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHH
Q 013706 83 WYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQR 139 (438)
Q Consensus 83 ~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~ 139 (438)
..+...+...++..+++++..|..|.||+ +.++..+..+++++++..+++..
T Consensus 101 ----~~~~~~~~~~~~~~~~~~~~~d~~g~t~l-~~A~~~~~~~~~~~ll~~ga~~~ 152 (337)
T 4g8k_A 101 ----IAGSVKLLKLFLSKGADVNECDFYGFTAF-MEAAVYGKVKALKFLYKRGANVN 152 (337)
T ss_dssp ----HHTCHHHHHHHHTTTCCTTCBCTTCCBHH-HHHHHTTCHHHHHHHHHTTCCTT
T ss_pred ----hcccchhhHHhhhccchhhhhccCCCCHH-HHHHHcCcHHHHHHHHHcCCCcc
Confidence 77889999999999999999999999999 66666788899999998887654
No 164
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.74 E-value=4.7e-18 Score=166.29 Aligned_cols=197 Identities=15% Similarity=0.171 Sum_probs=127.7
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHH--c-cCcEEEEeCccccc
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE--A-EGGILFVDEAYRLI 275 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--a-~~~il~iDEid~l~ 275 (438)
+.+++|+||||||||++|+++++.+.... ...+++.+++..+...+.+.........|.. . .+.||||||+|.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~--~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~ 207 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNE--PDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLI 207 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHC--CSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGS
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC--CCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCccccc
Confidence 57899999999999999999999885431 1236788888777655443322211122322 2 56899999999998
Q ss_pred CCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCCC--cceeCCCCCHHHHHHHHHHHHhccc
Q 013706 276 PMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQT 353 (438)
Q Consensus 276 ~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~--~~i~~~~~~~~e~~~il~~~l~~~~ 353 (438)
.+. .....++..+-...+.+..++++++++.. .+...+++|++||. ..+.+++|+.+++.+|++..+...
T Consensus 208 ~~~-----~~q~~l~~~l~~l~~~~~~iIitt~~~~~--~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~- 279 (440)
T 2z4s_A 208 GKT-----GVQTELFHTFNELHDSGKQIVICSDREPQ--KLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIE- 279 (440)
T ss_dssp SCH-----HHHHHHHHHHHHHHTTTCEEEEEESSCGG--GCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHH-
T ss_pred CCh-----HHHHHHHHHHHHHHHCCCeEEEEECCCHH--HHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHc-
Confidence 631 11122333333334556666665543222 11112788899995 789999999999999999988753
Q ss_pred cccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHH
Q 013706 354 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 432 (438)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~ 432 (438)
++ .++++++..++... .||.|++.++++++...+... + ..|+.+++.++++.
T Consensus 280 ------~~----~i~~e~l~~la~~~-------~gn~R~l~~~L~~~~~~a~~~---------~-~~It~~~~~~~l~~ 331 (440)
T 2z4s_A 280 ------HG----ELPEEVLNFVAENV-------DDNLRRLRGAIIKLLVYKETT---------G-KEVDLKEAILLLKD 331 (440)
T ss_dssp ------TC----CCCTTHHHHHHHHC-------CSCHHHHHHHHHHHHHHHHHS---------S-SCCCHHHHHHHTST
T ss_pred ------CC----CCCHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHHh---------C-CCCCHHHHHHHHHH
Confidence 22 34556666666543 799999999999988766311 0 23556666655543
No 165
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.74 E-value=1.1e-18 Score=166.66 Aligned_cols=202 Identities=18% Similarity=0.262 Sum_probs=149.4
Q ss_pred hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706 162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 241 (438)
Q Consensus 162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 241 (438)
..++|.+....++.+.+..+ +....+++++|++||||+++|++++..... ...|+.++|+.
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~--------------a~~~~~vli~GesGtGKe~lAr~ih~~s~r-----~~~fv~vnc~~ 189 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKI--------------AKSKAPVLITGESGTGKEIVARLIHRYSGR-----KGAFVDLNCAS 189 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHH--------------HTSCSCEEEECCTTSSHHHHHHHHHHHHCC-----CSCEEEEESSS
T ss_pred ccccccchHHHHHHhhhhhh--------------hccchhheEEeCCCchHHHHHHHHHHhccc-----cCCcEEEEccc
Confidence 45778887777777665443 134567999999999999999999986643 22499999986
Q ss_pred cc-----ccccccchH-------HHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC---------
Q 013706 242 LV-----GEFVGHTGP-------KTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG--------- 300 (438)
Q Consensus 242 ~~-----~~~~g~~~~-------~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~--------- 300 (438)
+. +.++|+... .....|+.|.+|+||||||+.+.+..| ..|++.++++
T Consensus 190 ~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q-----------~~Ll~~l~~~~~~~~g~~~ 258 (368)
T 3dzd_A 190 IPQELAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQ-----------AKLLRVLETGSFTRLGGNQ 258 (368)
T ss_dssp SCTTTHHHHHHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHH-----------HHHHHHHHHSEECCBTCCC
T ss_pred CChHHHHHHhcCccccccCCcccccCChHhhcCCCeEEecChhhCCHHHH-----------HHHHHHHHhCCcccCCCCc
Confidence 43 334554221 123578899999999999999987444 8899988753
Q ss_pred ----CEEEEEecCChhHHHHhhh--CcCccCCC-CcceeCCCCCH--HHHHHHHHHHHhcccccccccccc-ccccccHH
Q 013706 301 ----KVVVIFAGYSEPMKRVIAS--NEGFCRRV-TKFFHFNDFNS--EELAKILHIKMNNQTEDSLLYGFK-LHSSCSMD 370 (438)
Q Consensus 301 ----~v~vi~~~~~~~~~~~~~~--~p~l~~R~-~~~i~~~~~~~--~e~~~il~~~l~~~~~~~~~~~~~-~~~~~~~~ 370 (438)
++.+|++|+.+....+... .+.|..|+ ...|.+|++.. +++..++.+++.+... ++. -...++++
T Consensus 259 ~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~-----~~~~~~~~~~~~ 333 (368)
T 3dzd_A 259 KIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAK-----EYKKNCFELSEE 333 (368)
T ss_dssp BEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHH-----HTTCCCCCBCHH
T ss_pred ceeeeeEEEEecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHH-----HcCCCCCCcCHH
Confidence 4678999887776544211 13455577 34688999987 8999999999987653 222 22468999
Q ss_pred HHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 371 AIAALIEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
++..+..+.| |||.|+|+|++++++..+
T Consensus 334 a~~~L~~~~w------pGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 334 TKEYLMKQEW------KGNVRELKNLIERAVILC 361 (368)
T ss_dssp HHHHHHTCCC------TTHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCC------CcHHHHHHHHHHHHHHhC
Confidence 9999999999 999999999999997654
No 166
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.74 E-value=1.9e-17 Score=158.10 Aligned_cols=189 Identities=20% Similarity=0.258 Sum_probs=128.1
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 239 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 239 (438)
.|++++|++.+++.+...+. ...+++++|+||||||||++|+++++.+.... .....++.+++
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~----------------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~-~~~~~~~~~~~ 97 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLK----------------SANLPHMLFYGPPGTGKTSTILALTKELYGPD-LMKSRILELNA 97 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTT----------------CTTCCCEEEECSTTSSHHHHHHHHHHHHHHHH-HHTTSEEEECS
T ss_pred CHHHhhCCHHHHHHHHHHHh----------------cCCCCEEEEECCCCCCHHHHHHHHHHHhCCCc-ccccceEEEcc
Confidence 57899999999888877632 22345699999999999999999999875320 01125677776
Q ss_pred cccccc-ccccchHHHHHHHHH----------------ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--C
Q 013706 240 TDLVGE-FVGHTGPKTRRRIKE----------------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--G 300 (438)
Q Consensus 240 ~~~~~~-~~g~~~~~~~~~~~~----------------a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~ 300 (438)
++..+. .+.+ .+.. +.. ....||||||+|.+.+.. .+.|+..|++ .
T Consensus 98 ~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~-----------~~~Ll~~le~~~~ 162 (353)
T 1sxj_D 98 SDERGISIVRE---KVKN-FARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADA-----------QSALRRTMETYSG 162 (353)
T ss_dssp SSCCCHHHHTT---HHHH-HHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHH-----------HHHHHHHHHHTTT
T ss_pred ccccchHHHHH---HHHH-HhhhcccccchhhcccCCCCCceEEEEECCCccCHHH-----------HHHHHHHHHhcCC
Confidence 653211 1111 1111 111 234699999999997633 3677777764 2
Q ss_pred CEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHh
Q 013706 301 KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKET 380 (438)
Q Consensus 301 ~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (438)
...+|++++.... ..|++++|+ ..+.|++|+.+++..++...+.+.. ..++++++..+....
T Consensus 163 ~~~~il~~~~~~~-----l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~~~~~~-----------~~i~~~~l~~l~~~~- 224 (353)
T 1sxj_D 163 VTRFCLICNYVTR-----IIDPLASQC-SKFRFKALDASNAIDRLRFISEQEN-----------VKCDDGVLERILDIS- 224 (353)
T ss_dssp TEEEEEEESCGGG-----SCHHHHHHS-EEEECCCCCHHHHHHHHHHHHHTTT-----------CCCCHHHHHHHHHHT-
T ss_pred CceEEEEeCchhh-----CcchhhccC-ceEEeCCCCHHHHHHHHHHHHHHhC-----------CCCCHHHHHHHHHHc-
Confidence 3444444433221 278899998 5899999999999999998887532 235778888777765
Q ss_pred hHhhhccccccchHHHHHHHHHHh
Q 013706 381 TEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 381 ~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
.||.|.+.++++.+...+
T Consensus 225 ------~G~~r~~~~~l~~~~~~~ 242 (353)
T 1sxj_D 225 ------AGDLRRGITLLQSASKGA 242 (353)
T ss_dssp ------SSCHHHHHHHHHHTHHHH
T ss_pred ------CCCHHHHHHHHHHHHHhc
Confidence 478888888888776543
No 167
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.74 E-value=3e-17 Score=154.85 Aligned_cols=200 Identities=15% Similarity=0.103 Sum_probs=131.2
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHH--ccCcEEEEeCccccc
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE--AEGGILFVDEAYRLI 275 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--a~~~il~iDEid~l~ 275 (438)
.+.+++|+||||||||++|+++++.+... ..+++.+++.++...+.+.........|.. ..++||||||+|.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~ 111 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR----GYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLS 111 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT----TCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC----CCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCccccc
Confidence 46789999999999999999999988643 237888888877665544332221122221 247899999999987
Q ss_pred CCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCCC--cceeCCCCCHHHHHHHHHHHHhccc
Q 013706 276 PMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT--KFFHFNDFNSEELAKILHIKMNNQT 353 (438)
Q Consensus 276 ~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~--~~i~~~~~~~~e~~~il~~~l~~~~ 353 (438)
.++ .....++..+-...+.+..++++++++.. . +...+++|++||. ..+.|++ +.+++.+|++.++.+..
T Consensus 112 ~~~-----~~~~~l~~~l~~~~~~~~~iii~~~~~~~-~-l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~ 183 (324)
T 1l8q_A 112 GKE-----RTQIEFFHIFNTLYLLEKQIILASDRHPQ-K-LDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFN 183 (324)
T ss_dssp TCH-----HHHHHHHHHHHHHHHTTCEEEEEESSCGG-G-CTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTT
T ss_pred CCh-----HHHHHHHHHHHHHHHCCCeEEEEecCChH-H-HHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcC
Confidence 531 11122333333334456666665543322 1 1123888999995 7899999 99999999999987532
Q ss_pred cccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhc-cHHHHHHHHHH
Q 013706 354 EDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTI-TLEDLEAGLKL 432 (438)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i-~~~d~~~a~~~ 432 (438)
..++++++..+... . ||.|++.++++++.... ..+.. ..+...| +.+++.+++..
T Consensus 184 -----------~~l~~~~l~~l~~~-------~-g~~r~l~~~l~~~~~~~-~~~l~----~~~~~~i~t~~~i~~~~~~ 239 (324)
T 1l8q_A 184 -----------LELRKEVIDYLLEN-------T-KNVREIEGKIKLIKLKG-FEGLE----RKERKERDKLMQIVEFVAN 239 (324)
T ss_dssp -----------CCCCHHHHHHHHHH-------C-SSHHHHHHHHHHHHHHC-HHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCCHHHHHHHHHh-------C-CCHHHHHHHHHHHHHcC-HHHhc----cccccCCCCHHHHHHHHHH
Confidence 34567777776654 2 67899999998887650 00000 1234567 88898888775
Q ss_pred H
Q 013706 433 L 433 (438)
Q Consensus 433 ~ 433 (438)
.
T Consensus 240 ~ 240 (324)
T 1l8q_A 240 Y 240 (324)
T ss_dssp H
T ss_pred H
Confidence 4
No 168
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.74 E-value=1.9e-18 Score=163.29 Aligned_cols=112 Identities=26% Similarity=0.336 Sum_probs=99.0
Q ss_pred CCCCcHHHHHHHcCC---HHHHHHHhcCCCCCCcccccccCCCChHHHHHHH----cCCHHHHHHHHHCCC---------
Q 013706 2 QMAQTPLHVSAGYNK---AEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAK----NGCNEAAKLLLAHGA--------- 65 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~---~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~----~g~~~~v~~Ll~~g~--------- 65 (438)
..|+||||+|+..|+ .++++.|+++ ..++++.+|..|+||||+|+. .|+.+++++|++.++
T Consensus 162 ~~g~TpLh~A~~~g~~~~~~~~~~ll~~---~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~ 238 (327)
T 1sw6_A 162 NMGESCLVKAVKSVNNYDSGTFEALLDY---LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNR 238 (327)
T ss_dssp TTCCCHHHHHHHSSHHHHTTCHHHHHHH---HGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGC
T ss_pred CCCCCHHHHHHHhcccccHHHHHHHHHh---hhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccch
Confidence 369999999999998 7888888873 236799999999999999999 899999999998743
Q ss_pred ------------------------------------CcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCC
Q 013706 66 ------------------------------------FIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDN 109 (438)
Q Consensus 66 ------------------------------------~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~ 109 (438)
++|.+|..|+||||+|+ ..|+.+++++|+++|++++.+|.
T Consensus 239 ~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~----~~g~~~~v~~Ll~~Gad~~~~d~ 314 (327)
T 1sw6_A 239 PIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAA----RLGNISIVDALLDYGADPFIANK 314 (327)
T ss_dssp CEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHH----HHCCHHHHHHHHHTTCCTTCCCT
T ss_pred HHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCCcccCC
Confidence 57888999999999999 88999999999999999999999
Q ss_pred CCCcccccccc
Q 013706 110 EGKTPLDHLSN 120 (438)
Q Consensus 110 ~g~t~l~~~a~ 120 (438)
.|+||||+++.
T Consensus 315 ~G~TpL~~A~~ 325 (327)
T 1sw6_A 315 SGLRPVDFGAG 325 (327)
T ss_dssp TSCCGGGGTCC
T ss_pred CCCCHHHHHHh
Confidence 99999955443
No 169
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.73 E-value=6.9e-18 Score=132.63 Aligned_cols=87 Identities=30% Similarity=0.416 Sum_probs=71.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHh
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSV 82 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 82 (438)
+|+||||+||..|+.+++++|++ .+++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus 23 ~g~t~L~~A~~~g~~~~v~~Ll~----~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~ 98 (110)
T 2zgd_A 23 DLGKKLLEAARAGQDDEVRILMA----NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISI 98 (110)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHH
Confidence 67788888888888888888887 57778888888888888888888888888888888888888888888888888
Q ss_pred hcccccCcHHHHHHH
Q 013706 83 WYSIRSEDYATVKTL 97 (438)
Q Consensus 83 ~~~~~~~~~~~~~~L 97 (438)
..++.+++++|
T Consensus 99 ----~~~~~~~~~~L 109 (110)
T 2zgd_A 99 ----DNGNEDLAEIL 109 (110)
T ss_dssp ----HHTCHHHHHHH
T ss_pred ----HcCCHHHHHHh
Confidence 67788887765
No 170
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.73 E-value=1.4e-17 Score=133.83 Aligned_cols=94 Identities=47% Similarity=0.655 Sum_probs=90.1
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
..|+||||+|+..|+.+++++|++ .+++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 33 ~~g~t~L~~A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A 108 (126)
T 1n0r_A 33 KNGRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108 (126)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCCCcHHHHHHHcCcHHHHHHHHH----cCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 368999999999999999999999 6889999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCcHHHHHHHHhCCCC
Q 013706 82 VWYSIRSEDYATVKTLLEYNAD 103 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~ 103 (438)
+ ..++.+++++|+++|++
T Consensus 109 ~----~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 109 A----RNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp H----HTTCHHHHHHHHHHTCC
T ss_pred H----HcCcHHHHHHHHHcCCC
Confidence 9 88999999999999986
No 171
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.72 E-value=1e-17 Score=154.29 Aligned_cols=94 Identities=28% Similarity=0.303 Sum_probs=90.2
Q ss_pred CCCcHHHHHHHc---CCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHH
Q 013706 3 MAQTPLHVSAGY---NKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLH 79 (438)
Q Consensus 3 ~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 79 (438)
.|+||||+||.. |+.+++++|++ .|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus 168 ~g~t~Lh~A~~~~~~~~~~~v~~Ll~----~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~ 243 (278)
T 1dcq_A 168 PDETALHLAVRSVDRTSLHIVDFLVQ----NSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLD 243 (278)
T ss_dssp TTCBHHHHHHHHCCTTTHHHHHHHHH----HCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred CCCCcchHHHHhcccchHHHHHHHHH----CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHH
Confidence 689999999999 89999999999 78999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccCcHHHHHHHHhCCCCC
Q 013706 80 LSVWYSIRSEDYATVKTLLEYNADC 104 (438)
Q Consensus 80 ~A~~~~~~~~~~~~~~~Ll~~ga~~ 104 (438)
+|+ ..|+.+++++|+++|++.
T Consensus 244 ~A~----~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 244 IAK----RLKHEHCEELLTQALSGR 264 (278)
T ss_dssp HHH----HTTCHHHHHHHHHHHTTC
T ss_pred HHH----HcCCHHHHHHHHHcCCCC
Confidence 999 889999999999998853
No 172
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.72 E-value=3.6e-17 Score=157.98 Aligned_cols=229 Identities=14% Similarity=0.118 Sum_probs=147.8
Q ss_pred hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706 162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 241 (438)
Q Consensus 162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 241 (438)
++++|.+...+.+.+++.... ....+..++|+||||||||++++.+++.+...... ...++.+++..
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~------------~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~-~~~~~~i~~~~ 86 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLY------------REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG-KFKHVYINTRQ 86 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGG------------GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS-SCEEEEEEHHH
T ss_pred CCCCChHHHHHHHHHHHHHHH------------cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC-CceEEEEECCC
Confidence 678999988888887644321 12356789999999999999999999988542100 22566777543
Q ss_pred cc------cc----------ccccchHH-HHH---HHHHcc-CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhc---
Q 013706 242 LV------GE----------FVGHTGPK-TRR---RIKEAE-GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM--- 297 (438)
Q Consensus 242 ~~------~~----------~~g~~~~~-~~~---~~~~a~-~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~--- 297 (438)
.. .. ..|.+... ... .+.... +.||||||++.+..... ...+..|+..+
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~-------~~~l~~l~~~~~~~ 159 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN-------DDILYKLSRINSEV 159 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC-------STHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc-------CHHHHHHhhchhhc
Confidence 21 11 11222222 222 222222 57999999999986431 04556777666
Q ss_pred cCCCEEEEEecCChhHHHHhhhCcCccCCCC-cceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHH
Q 013706 298 DGGKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALI 376 (438)
Q Consensus 298 ~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~-~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (438)
....+.+|++++..+.... .++.+.+||. ..+.|++|+.+++.+++...+.+.. . ...++.+++..+.
T Consensus 160 ~~~~~~~I~~~~~~~~~~~--~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~--------~-~~~~~~~~~~~l~ 228 (386)
T 2qby_A 160 NKSKISFIGITNDVKFVDL--LDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF--------K-PGVLPDNVIKLCA 228 (386)
T ss_dssp CC--EEEEEEESCGGGGGG--CTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB--------C-SSCSCHHHHHHHH
T ss_pred CCCeEEEEEEECCCChHhh--hCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc--------c-CCCCCHHHHHHHH
Confidence 4567888888876654221 2677888885 5899999999999999998876421 0 1245667776666
Q ss_pred HHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHHH
Q 013706 377 EKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLLL 434 (438)
Q Consensus 377 ~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~~ 434 (438)
.... ...||.+.+.++++.+...+.. .+...|+.+|+..+++.+.
T Consensus 229 ~~~~----~~~G~~r~~~~ll~~a~~~a~~---------~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 229 ALAA----REHGDARRALDLLRVSGEIAER---------MKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HHHH----HTTCCHHHHHHHHHHHHHHHHH---------TTCSSCCHHHHHHHHHHHH
T ss_pred HHHH----HhcCCHHHHHHHHHHHHHHHHh---------cCCCccCHHHHHHHHHHHh
Confidence 6543 1128888888898888766521 1234688888888877654
No 173
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.72 E-value=4.3e-17 Score=153.92 Aligned_cols=188 Identities=25% Similarity=0.312 Sum_probs=129.7
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 239 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 239 (438)
.|++++|++.+++.+..++.. ...++++|+||||||||++|+++++.+...+ ....++.+++
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~----------------~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~--~~~~~~~~~~ 84 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKT----------------GSMPHLLFAGPPGVGKTTAALALARELFGEN--WRHNFLELNA 84 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHH----------------TCCCEEEEESCTTSSHHHHHHHHHHHHHGGG--HHHHEEEEET
T ss_pred CHHHhhCCHHHHHHHHHHHHc----------------CCCCeEEEECcCCCCHHHHHHHHHHHhcCCc--ccCceEEeec
Confidence 478899999999988876431 1345799999999999999999999875321 1124667776
Q ss_pred ccccccccccchHHHHHHHH-----HccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCChh
Q 013706 240 TDLVGEFVGHTGPKTRRRIK-----EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEP 312 (438)
Q Consensus 240 ~~~~~~~~g~~~~~~~~~~~-----~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~ 312 (438)
++..+. ......+..... .+.++||||||+|.+.+ ...+.|+..++. ..+++|++++...
T Consensus 85 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~L~~~le~~~~~~~~i~~~~~~~ 151 (327)
T 1iqp_A 85 SDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ-----------DAQQALRRTMEMFSSNVRFILSCNYSS 151 (327)
T ss_dssp TCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH-----------HHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred cccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH-----------HHHHHHHHHHHhcCCCCeEEEEeCCcc
Confidence 553221 011111222111 13468999999999975 334777777764 4556666654433
Q ss_pred HHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccc
Q 013706 313 MKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGL 392 (438)
Q Consensus 313 ~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 392 (438)
. ..|++.+|+. .+.|++|+.+++.+++...+.+.. ..++++++..+.... .||.|.
T Consensus 152 ~-----l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~l~~~~-------~g~~r~ 207 (327)
T 1iqp_A 152 K-----IIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEG-----------LELTEEGLQAILYIA-------EGDMRR 207 (327)
T ss_dssp G-----SCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTT-----------CEECHHHHHHHHHHH-------TTCHHH
T ss_pred c-----cCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcC-----------CCCCHHHHHHHHHHC-------CCCHHH
Confidence 2 2778888984 899999999999999998887642 235677887777654 688888
Q ss_pred hHHHHHHHHH
Q 013706 393 VDPMLVNARE 402 (438)
Q Consensus 393 l~~~~~~a~~ 402 (438)
+.++++.+..
T Consensus 208 ~~~~l~~~~~ 217 (327)
T 1iqp_A 208 AINILQAAAA 217 (327)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 8888887653
No 174
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.72 E-value=8.2e-18 Score=139.08 Aligned_cols=138 Identities=16% Similarity=0.159 Sum_probs=95.8
Q ss_pred hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccc
Q 013706 163 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 242 (438)
Q Consensus 163 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 242 (438)
+++|.+...+.+.+.+..+ +....+++|+||||||||++|+++++... ....+|+ ++++.+
T Consensus 2 ~iiG~s~~~~~~~~~~~~~--------------a~~~~~vll~G~~GtGKt~lA~~i~~~~~----~~~~~~v-~~~~~~ 62 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL--------------SETDIAVWLYGAPGTGRMTGARYLHQFGR----NAQGEFV-YRELTP 62 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH--------------TTCCSCEEEESSTTSSHHHHHHHHHHSST----TTTSCCE-EEECCT
T ss_pred CceeCCHHHHHHHHHHHHH--------------hCCCCCEEEECCCCCCHHHHHHHHHHhCC----ccCCCEE-EECCCC
Confidence 5688888877777765544 24567899999999999999999998542 2344788 888876
Q ss_pred cccccccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCChhHHHHhh--
Q 013706 243 VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIA-- 318 (438)
Q Consensus 243 ~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~-- 318 (438)
... ......++.+.+++|||||+|.+.+..| ..|+..|+. .++.+|++|+.+....+..
T Consensus 63 ~~~------~~~~~~~~~a~~g~l~ldei~~l~~~~q-----------~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~ 125 (145)
T 3n70_A 63 DNA------PQLNDFIALAQGGTLVLSHPEHLTREQQ-----------YHLVQLQSQEHRPFRLIGIGDTSLVELAASNH 125 (145)
T ss_dssp TTS------SCHHHHHHHHTTSCEEEECGGGSCHHHH-----------HHHHHHHHSSSCSSCEEEEESSCHHHHHHHSC
T ss_pred Ccc------hhhhcHHHHcCCcEEEEcChHHCCHHHH-----------HHHHHHHhhcCCCEEEEEECCcCHHHHHHcCC
Confidence 544 3456778889999999999999986433 667776654 4577888887765543211
Q ss_pred hCcCccCCC-CcceeCCCC
Q 013706 319 SNEGFCRRV-TKFFHFNDF 336 (438)
Q Consensus 319 ~~p~l~~R~-~~~i~~~~~ 336 (438)
..+.|..|+ ...|.+|++
T Consensus 126 ~~~~L~~rl~~~~i~lPpL 144 (145)
T 3n70_A 126 IIAELYYCFAMTQIACLPL 144 (145)
T ss_dssp CCHHHHHHHHHHEEECCCC
T ss_pred CCHHHHHHhcCCEEeCCCC
Confidence 134445565 335667765
No 175
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.72 E-value=1.3e-17 Score=166.56 Aligned_cols=98 Identities=22% Similarity=0.246 Sum_probs=89.8
Q ss_pred CCCCcHHHHHHH---cCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHH
Q 013706 2 QMAQTPLHVSAG---YNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPL 78 (438)
Q Consensus 2 ~~g~tpLh~A~~---~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L 78 (438)
..|+||||+||. .|+.++|++|++ .|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+|||
T Consensus 169 ~~g~t~Lh~A~~~a~~g~~~~v~~Ll~----~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl 244 (497)
T 3lvq_E 169 APEELVLHLAVKVANQASLPLVDFIIQ----NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETAL 244 (497)
T ss_dssp CSCBCHHHHHHHTCCTTTHHHHHHHHH----HSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHH
T ss_pred cccchHHHHHHHhcccccHHHHHHHHH----cCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 369999999976 899999999999 7899999999999999999999999999999999999999999999999
Q ss_pred HHHhhcccccCcHHHHHHHHhCCCCCccc
Q 013706 79 HLSVWYSIRSEDYATVKTLLEYNADCSAK 107 (438)
Q Consensus 79 ~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~ 107 (438)
|+|+ ..|+.+++++|+++|++++..
T Consensus 245 ~~A~----~~~~~~~~~~Ll~~ga~~~~~ 269 (497)
T 3lvq_E 245 DIAR----KKHHKECEELLEQAQAGTFAF 269 (497)
T ss_dssp HHHH----HTTCHHHHHHHHHTCC-----
T ss_pred HHHH----HcCCHHHHHHHHHhCCCCCCC
Confidence 9999 889999999999999998874
No 176
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.71 E-value=1.9e-16 Score=149.11 Aligned_cols=184 Identities=24% Similarity=0.265 Sum_probs=127.8
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 239 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 239 (438)
.+++++|++.+++.+.+++. ....++++|+||||||||++|+.+++.+...+. ...++.+++
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~----------------~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~--~~~~~~~~~ 80 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAK----------------DGNMPHMIISGMPGIGKTTSVHCLAHELLGRSY--ADGVLELNA 80 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHH----------------SCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGH--HHHEEEECT
T ss_pred CHHHHHCCHHHHHHHHHHHH----------------cCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcc--cCCEEEecC
Confidence 57889999999998887743 123445999999999999999999998742110 114666666
Q ss_pred ccccccccccchHHHHHHHHH----------ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEe
Q 013706 240 TDLVGEFVGHTGPKTRRRIKE----------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFA 307 (438)
Q Consensus 240 ~~~~~~~~g~~~~~~~~~~~~----------a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~ 307 (438)
++..+ ...++..++. .+..||||||+|.+.. ...+.|+..++. ..+++|++
T Consensus 81 ~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~-----------~~~~~L~~~le~~~~~~~~il~ 143 (323)
T 1sxj_B 81 SDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA-----------GAQQALRRTMELYSNSTRFAFA 143 (323)
T ss_dssp TSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH-----------HHHHTTHHHHHHTTTTEEEEEE
T ss_pred ccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH-----------HHHHHHHHHHhccCCCceEEEE
Confidence 54321 1223333321 2357999999999975 234667777764 44566666
Q ss_pred cCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhcc
Q 013706 308 GYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 387 (438)
Q Consensus 308 ~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (438)
++... . ..|++++|+ ..+.|++|+.+++.+++...+.+.. ..++++++..+.... .
T Consensus 144 ~~~~~--~---l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~~~~~~l~~~~-------~ 199 (323)
T 1sxj_B 144 CNQSN--K---IIEPLQSQC-AILRYSKLSDEDVLKRLLQIIKLED-----------VKYTNDGLEAIIFTA-------E 199 (323)
T ss_dssp ESCGG--G---SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHT-----------CCBCHHHHHHHHHHH-------T
T ss_pred eCChh--h---chhHHHhhc-eEEeecCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHc-------C
Confidence 54432 2 278889998 5999999999999999998886532 235667777777654 6
Q ss_pred ccccchHHHHHHHHH
Q 013706 388 MNGGLVDPMLVNARE 402 (438)
Q Consensus 388 ~n~~~l~~~~~~a~~ 402 (438)
||.|.+.+.++.+..
T Consensus 200 G~~r~a~~~l~~~~~ 214 (323)
T 1sxj_B 200 GDMRQAINNLQSTVA 214 (323)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 788888888887763
No 177
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.70 E-value=7.2e-18 Score=170.54 Aligned_cols=246 Identities=17% Similarity=0.157 Sum_probs=141.7
Q ss_pred hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706 162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 241 (438)
Q Consensus 162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 241 (438)
..++|++.+++.+.-.+..- ..+.... .......++||+||||||||++|+++|+.+........ ...++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g----~~~~~~~-~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~---~~~~~~~ 366 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGG----VPKVLED-TRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTG---KGSTAAG 366 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCC----CCEETTT-TEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCT---TCSTTTT
T ss_pred chhcChHHHHHHHHHHHhCC----CcccccC-CCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCC---Ccccccc
Confidence 46889998877664321000 0000000 01123348999999999999999999987642111100 0012222
Q ss_pred cccccccc----chHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCC---------------E
Q 013706 242 LVGEFVGH----TGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK---------------V 302 (438)
Q Consensus 242 ~~~~~~g~----~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~---------------v 302 (438)
+....... ........+..|.+||+||||+|++.+. ..+.|++.|+++. +
T Consensus 367 l~~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~-----------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~ 435 (595)
T 3f9v_A 367 LTAAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDE-----------DRVAIHEAMEQQTVSIAKAGIVAKLNARA 435 (595)
T ss_dssp SEEECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSH-----------HHHHHHHHHHSSSEEEESSSSEEEECCCC
T ss_pred ccceeeeccccccccccCCeeEecCCCcEEeehhhhCCHh-----------HhhhhHHHHhCCEEEEecCCcEEEecCce
Confidence 22221111 0001123566788999999999999874 4488888887643 4
Q ss_pred EEEEecCChh--HH------HHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccc-------------
Q 013706 303 VVIFAGYSEP--MK------RVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGF------------- 361 (438)
Q Consensus 303 ~vi~~~~~~~--~~------~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~------------- 361 (438)
.||+|+++.. ++ .-+..+++|++|||..+.+.++..++...|+++.+...........+
T Consensus 436 ~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar 515 (595)
T 3f9v_A 436 AVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYAR 515 (595)
T ss_dssp EEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHH
T ss_pred EEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHH
Confidence 5788877642 00 00123899999998665554444433777777777643210000000
Q ss_pred -cccccccHHHHHHHHHHHhhHh--------hhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHH
Q 013706 362 -KLHSSCSMDAIAALIEKETTEK--------QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 432 (438)
Q Consensus 362 -~~~~~~~~~~~~~~~~~~~~~~--------~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~ 432 (438)
.+.+.+++++...+...+..-. ...+++.|.+.+++..|...|..+. ...|+.+|+.+|+..
T Consensus 516 ~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~---------~~~V~~~dv~~Ai~l 586 (595)
T 3f9v_A 516 KYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMAL---------KAEVTREDAERAINI 586 (595)
T ss_dssp HHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTS---------SCCSSHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHH
Confidence 1133455555566666543100 1237888999999998877774432 256999999999987
Q ss_pred HHh
Q 013706 433 LLR 435 (438)
Q Consensus 433 ~~~ 435 (438)
+..
T Consensus 587 ~~~ 589 (595)
T 3f9v_A 587 MRL 589 (595)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 178
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.70 E-value=5.4e-16 Score=149.15 Aligned_cols=188 Identities=17% Similarity=0.197 Sum_probs=130.1
Q ss_pred HHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCC-------
Q 013706 160 ELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTD------- 232 (438)
Q Consensus 160 ~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~------- 232 (438)
.|++++|++.+.+.+...+.. ...+..++|+||||||||++|+++++.+.........
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~---------------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 78 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSL---------------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDN 78 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHH---------------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHH
T ss_pred chhhccCcHHHHHHHHHHHHh---------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHH
Confidence 578899999999888876431 1233458999999999999999999988532211111
Q ss_pred ----------CEEEeecccccccccccchHHHHHHHHHcc-------CcEEEEeCcccccCCCCCCCchhHHHHHHHHHh
Q 013706 233 ----------RVTEVQRTDLVGEFVGHTGPKTRRRIKEAE-------GGILFVDEAYRLIPMQKADDKDYGIEALEEIMS 295 (438)
Q Consensus 233 ----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~-------~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~ 295 (438)
.++.+++... .....++.+++.+. +.||||||+|.+.. ..++.|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~-----------~~~~~Ll~ 141 (373)
T 1jr3_A 79 CREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR-----------HSFNALLK 141 (373)
T ss_dssp HHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH-----------HHHHHHHH
T ss_pred HHHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH-----------HHHHHHHH
Confidence 1223322210 11223555555542 47999999999864 34578888
Q ss_pred hccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHH
Q 013706 296 VMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA 373 (438)
Q Consensus 296 ~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 373 (438)
.+++ ..+++|++++.... ..+++++|+ ..+.|++|+.+++.+++..++.+.. ..++++++.
T Consensus 142 ~le~~~~~~~~Il~~~~~~~-----l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~-----------~~~~~~a~~ 204 (373)
T 1jr3_A 142 TLEEPPEHVKFLLATTDPQK-----LPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEH-----------IAHEPRALQ 204 (373)
T ss_dssp HHHSCCSSEEEEEEESCGGG-----SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHT-----------CCBCHHHHH
T ss_pred HHhcCCCceEEEEEeCChHh-----CcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHH
Confidence 8876 45677776654432 267788898 8999999999999999999887642 235667777
Q ss_pred HHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706 374 ALIEKETTEKQRREMNGGLVDPMLVNAREN 403 (438)
Q Consensus 374 ~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~ 403 (438)
.+.... .||.+.+.++++++...
T Consensus 205 ~l~~~~-------~G~~r~~~~~l~~~~~~ 227 (373)
T 1jr3_A 205 LLARAA-------EGSLRDALSLTDQAIAS 227 (373)
T ss_dssp HHHHHS-------SSCHHHHHHHHHHHHHH
T ss_pred HHHHHC-------CCCHHHHHHHHHHHHHh
Confidence 776654 78889999999887644
No 179
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.70 E-value=4.2e-17 Score=129.10 Aligned_cols=102 Identities=38% Similarity=0.542 Sum_probs=94.7
Q ss_pred cccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccc
Q 013706 36 AQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPL 115 (438)
Q Consensus 36 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l 115 (438)
.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+ ..++.+++++|+++|++++..|..|+|||
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~----~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl 79 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAA----KNGHAEIVKLLLAKGADVNARSKDGNTPE 79 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHH----TTTCHHHHHHHTTTTCCTTCCCTTCCCTT
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH----HcCcHHHHHHHHHcCCCCcccCCCCCCHH
Confidence 46889999999999999999999999999999999999999999999 88999999999999999999999999999
Q ss_pred cccccCCCchhHHHHHHhccchHHHHH
Q 013706 116 DHLSNGPGSAKLRELLLWHSEEQRKRR 142 (438)
Q Consensus 116 ~~~a~~~~~~~~~~lL~~~~~~~~~~~ 142 (438)
+.|+..+..+++++|+..+++.....
T Consensus 80 -~~A~~~~~~~~~~~Ll~~ga~~n~~~ 105 (115)
T 2l6b_A 80 -HLAKKNGHHEIVKLLDAKGADVNARS 105 (115)
T ss_dssp -HHHHTTTCHHHHHHHHTTSSSHHHHS
T ss_pred -HHHHHCCCHHHHHHHHHcCCCCCcCC
Confidence 66666789999999999998877654
No 180
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.70 E-value=1.6e-17 Score=147.76 Aligned_cols=104 Identities=24% Similarity=0.276 Sum_probs=83.0
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
..|+||||+||..|+.++|++|+++ .+++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 104 ~~g~t~L~~A~~~~~~~~v~~Ll~~---~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A 180 (222)
T 3ehr_A 104 KAGSTALYWACHGGHKDIVEMLFTQ---PNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMA 180 (222)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHTTS---TTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHC
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHcC---CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHh
Confidence 4699999999999999999999993 3899999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCcHHHHHHHHhCCCCCcccCCCCC
Q 013706 82 VWYSIRSEDYATVKTLLEYNADCSAKDNEGK 112 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~ 112 (438)
+ ..++.++++.|+..++.....+..++
T Consensus 181 ~----~~~~~~~l~~l~~~~~~~~~~~~~~~ 207 (222)
T 3ehr_A 181 T----NAACASLLKKKQGTDAVRTLSNAEDY 207 (222)
T ss_dssp C----SHHHHHHHC-----------------
T ss_pred c----chhHHHHHHHHhccchhhhccchhhh
Confidence 9 78899999999999999888776553
No 181
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.69 E-value=4.3e-17 Score=133.38 Aligned_cols=105 Identities=27% Similarity=0.345 Sum_probs=93.8
Q ss_pred CcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCC
Q 013706 31 KVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNE 110 (438)
Q Consensus 31 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~ 110 (438)
|+++ .+|..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+ ..++.+++++|+++|++++..|..
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~----~~~~~~~~~~Ll~~g~~~~~~~~~ 75 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEAC----NHGHLKVVELLLQHKALVNTTGYQ 75 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCGG
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH----HcCCHHHHHHHHHcCCcccCcCCC
Confidence 3456 67889999999999999999999999999999999999999999999 889999999999999999999999
Q ss_pred CCccccccccCCCchhHHHHHHhccchHHHH
Q 013706 111 GKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 141 (438)
Q Consensus 111 g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~ 141 (438)
|+||| |.|+..++.+++++|+..+++....
T Consensus 76 g~t~L-~~A~~~~~~~~v~~Ll~~ga~~~~~ 105 (137)
T 3c5r_A 76 NDSPL-HDAAKNGHVDIVKLLLSYGASRNAV 105 (137)
T ss_dssp GCCHH-HHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred CCCHH-HHHHHcCCHHHHHHHHHcCCCCCCC
Confidence 99999 6666678899999999888775544
No 182
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.69 E-value=1.9e-18 Score=165.46 Aligned_cols=124 Identities=15% Similarity=0.107 Sum_probs=103.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCc---ccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCc---ccccCCCCc
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKV---ELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFI---EAKANNGMT 76 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~---~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t 76 (438)
+++||||+||..|+.++|++|+++ ++ ..+..+..|.||||+|+..|+.+++++|+++|+++ +..+.+ +|
T Consensus 91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~----ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~T 165 (376)
T 2aja_A 91 KSEVICFVAAITGCSSALDTLCLL----LTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YH 165 (376)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHTTC------CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HH
T ss_pred CcCCHHHHHHHcCCHHHHHHHHHc----CCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CC
Confidence 457999999999999999999994 43 22234456889999999999999999999999862 333333 89
Q ss_pred HHHHHhhcccccCcHHHHHHHHhCCCCCcc--cCCCCCcccccccc-CCCchhHHHHHHhccc
Q 013706 77 PLHLSVWYSIRSEDYATVKTLLEYNADCSA--KDNEGKTPLDHLSN-GPGSAKLRELLLWHSE 136 (438)
Q Consensus 77 ~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~--~d~~g~t~l~~~a~-~~~~~~~~~lL~~~~~ 136 (438)
|||+|| ..|+.+++++|+++|++++. .|..|+||| +.|+ ..++.+++++|+..++
T Consensus 166 pLh~Aa----~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL-~~Aa~~~G~~eiv~~Ll~~ga 223 (376)
T 2aja_A 166 AFRLAA----ENGHLHVLNRLCELAPTEATAMIQAENYYAF-RWAAVGRGHHNVINFLLDCPV 223 (376)
T ss_dssp HHHHHH----HTTCHHHHHHHHHSCGGGHHHHHHHHHHHHH-HHHHSTTCCHHHHHHHTTSHH
T ss_pred HHHHHH----HCCCHHHHHHHHHcCCccchhccCCCCCCHH-HHHHHHCCCHHHHHHHHhCCC
Confidence 999999 89999999999999999887 889999999 5555 7899999999998664
No 183
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.69 E-value=7.3e-16 Score=149.05 Aligned_cols=228 Identities=18% Similarity=0.212 Sum_probs=146.4
Q ss_pred hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706 162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 241 (438)
Q Consensus 162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 241 (438)
++++|.+...+.+.+++..... + ....+++++|+||||||||++++.+++.+.... ...++.+++..
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~-------~---~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~i~~~~ 83 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLR-------N---PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT---TARFVYINGFI 83 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHH-------S---TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC---CCEEEEEETTT
T ss_pred CCCCChHHHHHHHHHHHHHHHc-------C---CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc---CeeEEEEeCcc
Confidence 6789999988888877553310 0 011223899999999999999999999875421 23677777654
Q ss_pred ccc------c---cc-------ccchHHH----HHHHHHc-cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-
Q 013706 242 LVG------E---FV-------GHTGPKT----RRRIKEA-EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG- 299 (438)
Q Consensus 242 ~~~------~---~~-------g~~~~~~----~~~~~~a-~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~- 299 (438)
... . .+ |.....+ ...+... .+.||||||+|.+.+ ..+..|+..++.
T Consensus 84 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~-----------~~~~~L~~~~~~~ 152 (389)
T 1fnn_A 84 YRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAP-----------DILSTFIRLGQEA 152 (389)
T ss_dssp CCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCH-----------HHHHHHHHHTTCH
T ss_pred CCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccch-----------HHHHHHHHHHHhC
Confidence 221 1 11 1112222 2222222 356999999999832 556777777754
Q ss_pred -----CCEEEEEecCChhHHHHhhhCcCccCCCCc-ceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHH
Q 013706 300 -----GKVVVIFAGYSEPMKRVIASNEGFCRRVTK-FFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIA 373 (438)
Q Consensus 300 -----~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~-~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 373 (438)
..+.+|++++....... .++.+.+||.. .+.|++|+.+++.+++...+..... ...++++++.
T Consensus 153 ~~~~~~~~~iI~~~~~~~~~~~--l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~---------~~~~~~~~~~ 221 (389)
T 1fnn_A 153 DKLGAFRIALVIVGHNDAVLNN--LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA---------EGSYSEDILQ 221 (389)
T ss_dssp HHHSSCCEEEEEEESSTHHHHT--SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC---------TTSSCHHHHH
T ss_pred CCCCcCCEEEEEEECCchHHHH--hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC---------CCCCCHHHHH
Confidence 47778877665543322 27778889854 8999999999999999998864210 1246778888
Q ss_pred HHHHHHhhHh--hhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHHH
Q 013706 374 ALIEKETTEK--QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKLL 433 (438)
Q Consensus 374 ~~~~~~~~~~--~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~~ 433 (438)
.+....++.. ....|+.|.+.++++.|...+..+ +...++.+|+.++++.+
T Consensus 222 ~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~---------~~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 222 MIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQN---------GRKHIAPEDVRKSSKEV 274 (389)
T ss_dssp HHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHT---------TCSSCCHHHHHHHHHHH
T ss_pred HHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHh---------CCCCcCHHHHHHHHHHH
Confidence 8887764110 001477888999998887765221 12346666776666554
No 184
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.68 E-value=1.7e-17 Score=143.17 Aligned_cols=160 Identities=16% Similarity=0.262 Sum_probs=110.7
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCC---cCCCCEE
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI---LPTDRVT 235 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~---~~~~~~~ 235 (438)
..+++++|.+...+.+.+.+. ...+.+++|+||||||||++|+.+++.+..... ....+++
T Consensus 19 ~~~~~~~g~~~~~~~l~~~l~----------------~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~ 82 (187)
T 2p65_A 19 GKLDPVIGRDTEIRRAIQILS----------------RRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLV 82 (187)
T ss_dssp TCSCCCCSCHHHHHHHHHHHT----------------SSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEE
T ss_pred cccchhhcchHHHHHHHHHHh----------------CCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEE
Confidence 357889999987777766532 134678999999999999999999998853111 1233666
Q ss_pred Eeeccccc--ccccccchHHHHHHHHHc----cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecC
Q 013706 236 EVQRTDLV--GEFVGHTGPKTRRRIKEA----EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGY 309 (438)
Q Consensus 236 ~~~~~~~~--~~~~g~~~~~~~~~~~~a----~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~ 309 (438)
.++...+. ..+.|.....+..++... .+.+|||||+|.+.+.+...+ ....+.+.|...++.+.+++|++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~--~~~~~~~~l~~~~~~~~~~ii~~~~ 160 (187)
T 2p65_A 83 SLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAE--GALDAGNILKPMLARGELRCIGATT 160 (187)
T ss_dssp EECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCT--TSCCTHHHHHHHHHTTCSCEEEEEC
T ss_pred EEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccc--cchHHHHHHHHHHhcCCeeEEEecC
Confidence 66666554 224454455555555443 346999999999986543111 0113446667777788899999988
Q ss_pred ChhHHHHhhhCcCccCCCCcceeCCCCC
Q 013706 310 SEPMKRVIASNEGFCRRVTKFFHFNDFN 337 (438)
Q Consensus 310 ~~~~~~~~~~~p~l~~R~~~~i~~~~~~ 337 (438)
..........+|++++||. .+.+++|+
T Consensus 161 ~~~~~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 161 VSEYRQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp HHHHHHHTTTCHHHHHHEE-EEECCSCC
T ss_pred HHHHHHHHhccHHHHHhcC-cccCCCCC
Confidence 7776655556899999996 59999885
No 185
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.68 E-value=1.8e-18 Score=142.63 Aligned_cols=133 Identities=15% Similarity=0.188 Sum_probs=93.3
Q ss_pred hhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccc
Q 013706 163 NIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL 242 (438)
Q Consensus 163 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 242 (438)
+++|.+...+++.+.+... ...+.+++|+||||||||++|+++++... +++.++++.+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~--------------~~~~~~vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~~~ 62 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAA--------------AKRTSPVFLTGEAGSPFETVARYFHKNGT--------PWVSPARVEY 62 (143)
T ss_dssp ---CCCHHHHHHHHHHHHH--------------HTCSSCEEEEEETTCCHHHHHGGGCCTTS--------CEECCSSTTH
T ss_pred CceeCCHHHHHHHHHHHHH--------------hCCCCcEEEECCCCccHHHHHHHHHHhCC--------CeEEechhhC
Confidence 4678888888887775543 13457899999999999999999987432 7888888876
Q ss_pred cccccccchHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC---CCEEEEEecCChhHHH-Hhh
Q 013706 243 VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIFAGYSEPMKR-VIA 318 (438)
Q Consensus 243 ~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~---~~v~vi~~~~~~~~~~-~~~ 318 (438)
...+ ....++.+.+++|||||+|.+.+..| ..|++.+++ .++.+|++++.+.... --
T Consensus 63 ~~~~-------~~~~~~~a~~~~l~lDei~~l~~~~q-----------~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~- 123 (143)
T 3co5_A 63 LIDM-------PMELLQKAEGGVLYVGDIAQYSRNIQ-----------TGITFIIGKAERCRVRVIASCSYAAGSDGIS- 123 (143)
T ss_dssp HHHC-------HHHHHHHTTTSEEEEEECTTCCHHHH-----------HHHHHHHHHHTTTTCEEEEEEEECTTTC--C-
T ss_pred ChHh-------hhhHHHhCCCCeEEEeChHHCCHHHH-----------HHHHHHHHhCCCCCEEEEEecCCCHHHHHhC-
Confidence 5543 56778899999999999999976433 667777764 4578888876543221 00
Q ss_pred hCcCccCCC-CcceeCCCC
Q 013706 319 SNEGFCRRV-TKFFHFNDF 336 (438)
Q Consensus 319 ~~p~l~~R~-~~~i~~~~~ 336 (438)
.++.|..|+ ...|.+|++
T Consensus 124 ~~~~L~~rl~~~~i~lPpL 142 (143)
T 3co5_A 124 CEEKLAGLFSESVVRIPPL 142 (143)
T ss_dssp HHHHHHHHSSSEEEEECCC
T ss_pred ccHHHHHHhcCcEEeCCCC
Confidence 134556676 456777765
No 186
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.68 E-value=6.8e-17 Score=129.56 Aligned_cols=77 Identities=30% Similarity=0.384 Sum_probs=74.2
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
..|+||||+||..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 38 ~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 38 EGGRKPLHYAADCGQLEILEFLLL----KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT 113 (123)
T ss_dssp TTSSCHHHHHHHTTCHHHHHHHHT----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHH----cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence 369999999999999999999999 7899999999999999999999999999999999999999999999999998
Q ss_pred h
Q 013706 82 V 82 (438)
Q Consensus 82 ~ 82 (438)
+
T Consensus 114 ~ 114 (123)
T 3aaa_C 114 D 114 (123)
T ss_dssp C
T ss_pred C
Confidence 6
No 187
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=147.27 Aligned_cols=125 Identities=22% Similarity=0.279 Sum_probs=115.8
Q ss_pred CCCCcHHHHHH-----HcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCc
Q 013706 2 QMAQTPLHVSA-----GYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMT 76 (438)
Q Consensus 2 ~~g~tpLh~A~-----~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t 76 (438)
..|+||||+|+ ..++.+++++|++ .|.+.+..|..|+||||+|+..|+.+++++|+++|+++|.+|..|+|
T Consensus 143 ~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~----~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~T 218 (276)
T 4hbd_A 143 RAGYSPIMLTALATLKTQDDIETVLQLFR----LGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGST 218 (276)
T ss_dssp TTSCCHHHHGGGCCCCSHHHHHHHHHHHH----HSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred CCCCCHHHHHHHHHhhhhhhHHHHHHHHH----cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCC
Confidence 47999999999 6689999999999 67888888999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccCcHHHHHHHHh-CCCCCcccCCCCCccccccccCCCchhHHHHHHhcc
Q 013706 77 PLHLSVWYSIRSEDYATVKTLLE-YNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHS 135 (438)
Q Consensus 77 ~L~~A~~~~~~~~~~~~~~~Ll~-~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~ 135 (438)
|||+|+ ..|+.+++++|++ .|++++..|..|+||| +.|+..++.+++++|+...
T Consensus 219 pLh~A~----~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL-~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 219 ALMCAC----EHGHKEIAGLLLAVPSCDISLTDRDGSTAL-MVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHHHHH----HHTCHHHHHHHHTSTTCCTTCCCTTSCCHH-HHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHH----HCCCHHHHHHHHhcCCCCCcCcCCCCCCHH-HHHHHcCCHHHHHHHHhcc
Confidence 999999 8899999999999 8999999999999999 6666678899999998654
No 188
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.67 E-value=6.4e-16 Score=147.59 Aligned_cols=196 Identities=19% Similarity=0.216 Sum_probs=125.1
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCC----------
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGI---------- 228 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~---------- 228 (438)
..|++++|++.+.+.+..++. .....++++|+||||||||++++++++.+.....
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~---------------~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~ 75 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSD---------------QPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF 75 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTT---------------CTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------
T ss_pred CCHHHhcCCHHHHHHHHHHHh---------------hCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceee
Confidence 357899999998888876530 1223445999999999999999999997632111
Q ss_pred ------------cCCCCEEEeeccccccccccc-chHHHHHHHHHc-----------------cCcEEEEeCcccccCCC
Q 013706 229 ------------LPTDRVTEVQRTDLVGEFVGH-TGPKTRRRIKEA-----------------EGGILFVDEAYRLIPMQ 278 (438)
Q Consensus 229 ------------~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~a-----------------~~~il~iDEid~l~~~~ 278 (438)
.....++.++.++. +. ....+++.++.. .+.||+|||++.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~-- 148 (354)
T 1sxj_E 76 VTASNRKLELNVVSSPYHLEITPSDM-----GNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK-- 148 (354)
T ss_dssp ----------CCEECSSEEEECCC---------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCH--
T ss_pred cccccccceeeeecccceEEecHhhc-----CCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH--
Confidence 00112233332221 11 111233433321 345999999999754
Q ss_pred CCCCchhHHHHHHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhcccccc
Q 013706 279 KADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDS 356 (438)
Q Consensus 279 ~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~ 356 (438)
...+.|+..++. ....+|++++.... ..|++++|+ ..+.|++|+.+++.++++..+.++
T Consensus 149 ---------~~~~~L~~~le~~~~~~~~Il~t~~~~~-----l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~---- 209 (354)
T 1sxj_E 149 ---------DAQAALRRTMEKYSKNIRLIMVCDSMSP-----IIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNE---- 209 (354)
T ss_dssp ---------HHHHHHHHHHHHSTTTEEEEEEESCSCS-----SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHH----
T ss_pred ---------HHHHHHHHHHHhhcCCCEEEEEeCCHHH-----HHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHc----
Confidence 233556666553 33455555443221 267889999 899999999999999999988764
Q ss_pred cccccccccccc-HHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhcccc
Q 013706 357 LLYGFKLHSSCS-MDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLS 409 (438)
Q Consensus 357 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~ 409 (438)
+. .++ ++++..++... .||.|.+.++++.+.......+.
T Consensus 210 ---~~----~~~~~~~l~~i~~~~-------~G~~r~a~~~l~~~~~~~~~~i~ 249 (354)
T 1sxj_E 210 ---RI----QLETKDILKRIAQAS-------NGNLRVSLLMLESMALNNELALK 249 (354)
T ss_dssp ---TC----EECCSHHHHHHHHHH-------TTCHHHHHHHHTHHHHTTTTEEC
T ss_pred ---CC----CCCcHHHHHHHHHHc-------CCCHHHHHHHHHHHHHhCCCCcC
Confidence 22 345 67777777654 78899999999988765432343
No 189
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.66 E-value=6.9e-17 Score=139.20 Aligned_cols=106 Identities=27% Similarity=0.309 Sum_probs=91.4
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccc-CCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN-MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHL 80 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 80 (438)
..|+||||+||..|+.+++++|++ .|+++|.+| ..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus 74 ~~g~t~L~~A~~~~~~~~v~~Ll~----~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~ 149 (183)
T 3deo_A 74 ENGRTALLFVAGLGSDKCVRLLAE----AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALEL 149 (183)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHH----TTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHH----cCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHH
Confidence 479999999999999999999999 789999998 889999999999999999999999999999999999999999
Q ss_pred HhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHh
Q 013706 81 SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLW 133 (438)
Q Consensus 81 A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~ 133 (438)
|+.. ++ ...+.+++ ..++..+..+++++|..
T Consensus 150 A~~~----~~-----------------~~~~~~~l-~~a~~~~~~~i~~~L~~ 180 (183)
T 3deo_A 150 AREI----LK-----------------TTPKGNPM-QFGRRIGLEKVINVLEG 180 (183)
T ss_dssp HHHH----HH-----------------TCCCCSHH-HHHHHHHHHHHHHHHHT
T ss_pred HHHh----cc-----------------CcccccHH-HHHHHcCHHHHHHHHHH
Confidence 9832 11 13467888 44555677888888764
No 190
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.66 E-value=1.8e-16 Score=151.24 Aligned_cols=106 Identities=25% Similarity=0.313 Sum_probs=88.1
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCcccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLS 81 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 81 (438)
..|+||||+||..|+.++|++|++ .|+++|..|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 233 ~~g~TpLh~Aa~~g~~~iv~~LL~----~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A 308 (368)
T 3jue_A 233 QDNATPLIQATAANSLLACEFLLQ----NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIA 308 (368)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred cCCCCHHHHHHHCCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHH
Confidence 468999999999999999999999 7899999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCcHHHHHHHHhCC---CCCcccCCCCCccc
Q 013706 82 VWYSIRSEDYATVKTLLEYN---ADCSAKDNEGKTPL 115 (438)
Q Consensus 82 ~~~~~~~~~~~~~~~Ll~~g---a~~~~~d~~g~t~l 115 (438)
+ ..++.+++++|+..+ ++....+..+.|++
T Consensus 309 ~----~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l 341 (368)
T 3jue_A 309 M----ETANADIVTLLRLAKMREAEAAQGQAGDETYL 341 (368)
T ss_dssp H----HTTCHHHHHHHHHHHC----------------
T ss_pred H----HCCCHHHHHHHHHcCCCcccccccCCCCCCHH
Confidence 9 889999999999765 33334556677777
No 191
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.66 E-value=1.5e-16 Score=161.98 Aligned_cols=148 Identities=14% Similarity=0.188 Sum_probs=99.1
Q ss_pred HHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-----------------------CEEEEEecCChh
Q 013706 256 RRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-----------------------KVVVIFAGYSEP 312 (438)
Q Consensus 256 ~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-----------------------~v~vi~~~~~~~ 312 (438)
..+..|.+++|||||++.+.+ .+.+.|++.|+++ ++.||++|+++.
T Consensus 195 g~~~~a~~gvL~LDEi~~l~~-----------~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~ 263 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIATLSL-----------KMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDT 263 (604)
T ss_dssp CHHHHTTTSEEEETTGGGSCH-----------HHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHH
T ss_pred ceeeecCCCEEEEechhhCCH-----------HHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHH
Confidence 456778899999999999865 3447788777632 456888888775
Q ss_pred HHHHhhhCcCccCCCC---cceeCCCC---CHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhh--
Q 013706 313 MKRVIASNEGFCRRVT---KFFHFNDF---NSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQ-- 384 (438)
Q Consensus 313 ~~~~~~~~p~l~~R~~---~~i~~~~~---~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 384 (438)
...+ +|+|++||. ..+.|+.. +.+.+..+++.+...... ......++++++..++.+++....
T Consensus 264 ~~~l---~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~ls~eAl~~Li~~~~r~~g~r 334 (604)
T 3k1j_A 264 VDKM---HPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKR------DGKIPHFTKEAVEEIVREAQKRAGRK 334 (604)
T ss_dssp HHHS---CHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHH------HCSSCCBBHHHHHHHHHHHHHTTCST
T ss_pred Hhhc---CHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhh------ccCcccCCHHHHHHHHHHHhhhhccc
Confidence 5544 999999995 46666543 345566666544433210 012246789999999998862211
Q ss_pred -hccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHHHHH
Q 013706 385 -RREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAGLKL 432 (438)
Q Consensus 385 -~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a~~~ 432 (438)
.-+.|.|++.++++.|...+.. .....|+.+|+.+|++.
T Consensus 335 ~~l~~~~R~l~~llr~A~~~A~~---------~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 335 GHLTLRLRDLGGIVRAAGDIAVK---------KGKKYVEREDVIEAVKM 374 (604)
T ss_dssp TEEECCHHHHHHHHHHHHHHHHH---------TTCSSBCHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHHHHh---------cCcccccHHHHHHHHHh
Confidence 1234789999999988665522 12346888888888753
No 192
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.64 E-value=2.7e-16 Score=123.42 Aligned_cols=95 Identities=37% Similarity=0.475 Sum_probs=82.6
Q ss_pred cccccccCCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHHHhhcccccCcHHHHHHHHhCCCCCcccCCCC
Q 013706 32 VELEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEG 111 (438)
Q Consensus 32 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g 111 (438)
......|.+|+||||+|+..|+.+++++|++.|++++.+|..|.||||+|+ ..++.+++++|+++|++++.+|..|
T Consensus 15 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~----~~~~~~~v~~Ll~~ga~~~~~d~~g 90 (110)
T 2zgd_A 15 PRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAA----RNGHLEVVKLLLEAGADVXAQDKFG 90 (110)
T ss_dssp -------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH----HTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred CcccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH----HcCCHHHHHHHHHcCCCccccccCC
Confidence 345667889999999999999999999999999999999999999999999 8899999999999999999999999
Q ss_pred CccccccccCCCchhHHHHH
Q 013706 112 KTPLDHLSNGPGSAKLRELL 131 (438)
Q Consensus 112 ~t~l~~~a~~~~~~~~~~lL 131 (438)
+||| +.|+..++.+++++|
T Consensus 91 ~tpl-~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 91 KTAF-DISIDNGNEDLAEIL 109 (110)
T ss_dssp CCHH-HHHHHHTCHHHHHHH
T ss_pred CcHH-HHHHHcCCHHHHHHh
Confidence 9999 666667788888776
No 193
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.64 E-value=2.3e-17 Score=157.92 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=103.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHhcCCCCCCcc---cccccCCCChHHHHHHHcCCHHHHHHHHHCCCCccc--ccCCCCcH
Q 013706 3 MAQTPLHVSAGYNKAEIVKSLLEWPGNDKVE---LEAQNMYGETPLHMAAKNGCNEAAKLLLAHGAFIEA--KANNGMTP 77 (438)
Q Consensus 3 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~ 77 (438)
.|+||||+||.+|+.++|++|++ .|++ .+..+.. +||||+|+..|+.+++++|+++|++++. .|..|.||
T Consensus 127 ~~~tpL~~Aa~~G~~eiv~~Ll~----~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~Tp 201 (376)
T 2aja_A 127 ENYQAFRLAAENGHLHVLNRLCE----LAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYA 201 (376)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH----SCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh----CCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCH
Confidence 36789999999999999999999 5643 2222223 9999999999999999999999999887 89999999
Q ss_pred HHHHhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhccchHHHH
Q 013706 78 LHLSVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWHSEEQRKR 141 (438)
Q Consensus 78 L~~A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~~~~~~~~ 141 (438)
||+|+. ..|+.+++++|++.|+ .|.||+ +.|+..++.+++++|...+++...+
T Consensus 202 L~~Aa~---~~G~~eiv~~Ll~~ga-------~~~taL-~~Aa~~g~~evv~lL~~~ga~~~~~ 254 (376)
T 2aja_A 202 FRWAAV---GRGHHNVINFLLDCPV-------MLAYAE-IHEFEYGEKYVNPFIARHVNRLKEM 254 (376)
T ss_dssp HHHHHS---TTCCHHHHHHHTTSHH-------HHHHHH-HCTTTTTTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HCCCHHHHHHHHhCCC-------ccchHH-HHHHHCCCHHHHHHHHhcCcccccc
Confidence 999981 3689999999998764 389999 6666678888999999988776554
No 194
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.63 E-value=2.9e-15 Score=142.07 Aligned_cols=183 Identities=22% Similarity=0.283 Sum_probs=120.3
Q ss_pred HHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 159 NELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 159 ~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
..|++++|++.+++.+...+. ....+|++|+||||||||++|+++++.+..... ...+.+++
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~----------------~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~--~~~~~~~~ 83 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVD----------------EGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY--SNMVLELN 83 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHH----------------TTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH--HHHEEEEC
T ss_pred CcHHHhcCcHHHHHHHHHHHh----------------cCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc--cceEEEEc
Confidence 357889999988888877643 123456999999999999999999998853110 11355666
Q ss_pred cccccccccccchHHHHHHH---HH------ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEe
Q 013706 239 RTDLVGEFVGHTGPKTRRRI---KE------AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFA 307 (438)
Q Consensus 239 ~~~~~~~~~g~~~~~~~~~~---~~------a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~ 307 (438)
.++..+ ...++..+ .+ ....|++|||+|.+... ..+.|+..++. ....+|++
T Consensus 84 ~~~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~-----------~~~~L~~~le~~~~~~~~il~ 146 (340)
T 1sxj_C 84 ASDDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA-----------AQNALRRVIERYTKNTRFCVL 146 (340)
T ss_dssp TTSCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH-----------HHHHHHHHHHHTTTTEEEEEE
T ss_pred Cccccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH-----------HHHHHHHHHhcCCCCeEEEEE
Confidence 554211 12222222 21 12589999999999753 33667777764 34445555
Q ss_pred cCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhcc
Q 013706 308 GYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRRE 387 (438)
Q Consensus 308 ~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (438)
++... . ..|++++|+ ..+.|++++.+++.+++...+.+.. ..++++++..+.... .
T Consensus 147 ~n~~~--~---i~~~i~sR~-~~~~~~~l~~~~~~~~l~~~~~~~~-----------~~i~~~~~~~i~~~s-------~ 202 (340)
T 1sxj_C 147 ANYAH--K---LTPALLSQC-TRFRFQPLPQEAIERRIANVLVHEK-----------LKLSPNAEKALIELS-------N 202 (340)
T ss_dssp ESCGG--G---SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHTTT-----------CCBCHHHHHHHHHHH-------T
T ss_pred ecCcc--c---cchhHHhhc-eeEeccCCCHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHc-------C
Confidence 44322 2 278899998 5899999999999999998886532 235566666666543 5
Q ss_pred ccccchHHHHHHH
Q 013706 388 MNGGLVDPMLVNA 400 (438)
Q Consensus 388 ~n~~~l~~~~~~a 400 (438)
|+.|.+.++++.+
T Consensus 203 G~~r~~~~~l~~~ 215 (340)
T 1sxj_C 203 GDMRRVLNVLQSC 215 (340)
T ss_dssp TCHHHHHHHTTTT
T ss_pred CCHHHHHHHHHHH
Confidence 6666666665544
No 195
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.62 E-value=8.7e-16 Score=138.69 Aligned_cols=107 Identities=28% Similarity=0.323 Sum_probs=93.9
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHhcCCCCCCccccccc-CCCChHHHHHHHcCCHHHHHHHHHCCCCcccccCCCCcHHHH
Q 013706 2 QMAQTPLHVSAGYNKAEIVKSLLEWPGNDKVELEAQN-MYGETPLHMAAKNGCNEAAKLLLAHGAFIEAKANNGMTPLHL 80 (438)
Q Consensus 2 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 80 (438)
..|+||||+||..|+.++|++|++ .|+++|.+| ..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus 75 ~~g~t~L~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~ 150 (244)
T 3ui2_A 75 ENGRTALLFVAGLGSDKCVRLLAE----AGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALEL 150 (244)
T ss_dssp TTSCBHHHHHHHHTCHHHHHHHHH----TTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHH----cCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence 369999999999999999999999 789999998 789999999999999999999999999999999999999999
Q ss_pred HhhcccccCcHHHHHHHHhCCCCCcccCCCCCccccccccCCCchhHHHHHHhc
Q 013706 81 SVWYSIRSEDYATVKTLLEYNADCSAKDNEGKTPLDHLSNGPGSAKLRELLLWH 134 (438)
Q Consensus 81 A~~~~~~~~~~~~~~~Ll~~ga~~~~~d~~g~t~l~~~a~~~~~~~~~~lL~~~ 134 (438)
|+.. .....+.||+ +.++..++.+++++|...
T Consensus 151 A~~~---------------------~~~~~~~~~l-~~a~~~g~~~iv~~L~~~ 182 (244)
T 3ui2_A 151 AREI---------------------LKTTPKGNPM-QFGRRIGLEKVINVLEGQ 182 (244)
T ss_dssp HHHH---------------------HTTCCCSSHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHH---------------------HhccCCCCHH-HHHHHcChHHHHHHHHHh
Confidence 9821 1125678999 555567788888888865
No 196
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.58 E-value=3.4e-16 Score=154.08 Aligned_cols=151 Identities=16% Similarity=0.212 Sum_probs=94.5
Q ss_pred hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec--
Q 013706 162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR-- 239 (438)
Q Consensus 162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~-- 239 (438)
..++|++.+++.+...+. ...++||+||||||||++|+++|+.+.. ..+|....+
T Consensus 22 ~~ivGq~~~i~~l~~al~------------------~~~~VLL~GpPGtGKT~LAraLa~~l~~-----~~~f~~~~~~~ 78 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAAL------------------SGESVFLLGPPGIAKSLIARRLKFAFQN-----ARAFEYLMTRF 78 (500)
T ss_dssp TTCSSCHHHHHHHHHHHH------------------HTCEEEEECCSSSSHHHHHHHGGGGBSS-----CCEEEEECCTT
T ss_pred hhhHHHHHHHHHHHHHHh------------------cCCeeEeecCchHHHHHHHHHHHHHHhh-----hhHHHHHHHhc
Confidence 457899998877665421 2469999999999999999999986632 123333333
Q ss_pred ---ccccccccccchHHHHHHHHHc------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCC---------
Q 013706 240 ---TDLVGEFVGHTGPKTRRRIKEA------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK--------- 301 (438)
Q Consensus 240 ---~~~~~~~~g~~~~~~~~~~~~a------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~--------- 301 (438)
+++++.+.+..... ...|..+ .++|||||||+.+.+ .+.+.|++.|+++.
T Consensus 79 ~t~~dL~G~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~~-----------~~q~~LL~~lee~~v~i~G~~~~ 146 (500)
T 3nbx_X 79 STPEEVFGPLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAGP-----------AILNTLLTAINERQFRNGAHVEK 146 (500)
T ss_dssp CCHHHHHCCBC-----------CBCCTTSGGGCSEEEEESGGGCCH-----------HHHHHHHHHHHSSEEECSSSEEE
T ss_pred CCHHHhcCcccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhcH-----------HHHHHHHHHHHHHhccCCCCcCC
Confidence 23333322221111 2233322 245899999988765 45588999987532
Q ss_pred ---EEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCH-HHHHHHHHHHH
Q 013706 302 ---VVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNS-EELAKILHIKM 349 (438)
Q Consensus 302 ---v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~-~e~~~il~~~l 349 (438)
.++|+||++-+-. ....+++++||...+.+++|+. +++.+|++...
T Consensus 147 ~~~~~iI~ATN~lpe~--~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 147 IPMRLLVAASNELPEA--DSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp CCCCEEEEEESSCCCT--TCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred cchhhhhhccccCCCc--cccHHHHHHHHHHHHHHHHhhhhhhHHHHHhccc
Confidence 2456666532110 0013488999999999999997 77888887654
No 197
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.51 E-value=2.4e-13 Score=128.40 Aligned_cols=131 Identities=11% Similarity=0.100 Sum_probs=89.3
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCC-----------------CCEEEeecccccccccccchHHHHHHHHHc
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPT-----------------DRVTEVQRTDLVGEFVGHTGPKTRRRIKEA 261 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~-----------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a 261 (438)
+..+||+||||||||++|+++|+.+........ ..+..+.+.+- +. ......++.+++.+
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~~--~~~i~~ir~l~~~~ 100 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG-KN--TLGVDAVREVTEKL 100 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT-CS--SBCHHHHHHHHHHT
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc-CC--CCCHHHHHHHHHHH
Confidence 445999999999999999999998864321110 12333333210 00 01223456666654
Q ss_pred -------cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCccee
Q 013706 262 -------EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFH 332 (438)
Q Consensus 262 -------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~ 332 (438)
...|++|||+|.+.. ...+.|+..+++ ..+++|++++... .+ .|++++|+ ..+.
T Consensus 101 ~~~~~~~~~kvviIdead~l~~-----------~a~naLLk~lEep~~~~~~Il~t~~~~--~l---~~ti~SRc-~~~~ 163 (334)
T 1a5t_A 101 NEHARLGGAKVVWVTDAALLTD-----------AAANALLKTLEEPPAETWFFLATREPE--RL---LATLRSRC-RLHY 163 (334)
T ss_dssp TSCCTTSSCEEEEESCGGGBCH-----------HHHHHHHHHHTSCCTTEEEEEEESCGG--GS---CHHHHTTS-EEEE
T ss_pred hhccccCCcEEEEECchhhcCH-----------HHHHHHHHHhcCCCCCeEEEEEeCChH--hC---cHHHhhcc-eeee
Confidence 247999999999975 445899999987 3466666554432 22 78899998 7899
Q ss_pred CCCCCHHHHHHHHHHHH
Q 013706 333 FNDFNSEELAKILHIKM 349 (438)
Q Consensus 333 ~~~~~~~e~~~il~~~l 349 (438)
|++|+.+++.+++....
T Consensus 164 ~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 164 LAPPPEQYAVTWLSREV 180 (334)
T ss_dssp CCCCCHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 99999999999887654
No 198
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.50 E-value=3.6e-13 Score=131.15 Aligned_cols=218 Identities=13% Similarity=0.088 Sum_probs=127.4
Q ss_pred hhhcChHHHHHHHHHHH-HHhhhHHHHHhcCCCCCCCCCCceEE--ecCCCCCHHHHHHHHHHHHHHcC--CcCCCCEEE
Q 013706 162 SNIVGLHELKIQLRKWA-KGMLLDERRKALGLKVGARRPPHMAF--LGNPGTGKTMVARILGRLLYMVG--ILPTDRVTE 236 (438)
Q Consensus 162 ~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ll--~GppGtGKT~la~~la~~l~~~~--~~~~~~~~~ 236 (438)
+.++|.+...+++.+.+ .... .+ . ...+..+++ +||||||||++++.+++.+.... ......++.
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~-------~~--~-~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLL-------SG--A-GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAY 91 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHH-------TS--S-CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCChHHHHHHHHHHHhHHHh-------cC--C-CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEE
Confidence 56889998888887765 4321 00 0 024567899 99999999999999999875310 000114555
Q ss_pred eeccc------cccc---cc-------ccchH----HHHHHHHH-ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHh
Q 013706 237 VQRTD------LVGE---FV-------GHTGP----KTRRRIKE-AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMS 295 (438)
Q Consensus 237 ~~~~~------~~~~---~~-------g~~~~----~~~~~~~~-a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~ 295 (438)
+++.. +... .+ |.... .+...+.. .++.||||||+|.+...+.. ...++..|+.
T Consensus 92 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~-----~~~~l~~l~~ 166 (412)
T 1w5s_A 92 VNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI-----AAEDLYTLLR 166 (412)
T ss_dssp EEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS-----CHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc-----chHHHHHHHH
Confidence 55422 1111 11 11111 22223332 23579999999999753110 1134444444
Q ss_pred hcc-----C--CCEEEEEecCChhHH-HHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhccccccccccccccccc
Q 013706 296 VMD-----G--GKVVVIFAGYSEPMK-RVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSC 367 (438)
Q Consensus 296 ~~~-----~--~~v~vi~~~~~~~~~-~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~ 367 (438)
.++ + ..+.+|++++...+. .+....+.+.+||...+.|++++.++..+++...+.... . ...+
T Consensus 167 ~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~-------~--~~~~ 237 (412)
T 1w5s_A 167 VHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGL-------R--DTVW 237 (412)
T ss_dssp HHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHB-------C--TTSC
T ss_pred HHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcC-------C--CCCC
Confidence 443 4 677788776544333 331111667777766699999999999999988776421 0 1235
Q ss_pred cHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHh
Q 013706 368 SMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENL 404 (438)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~ 404 (438)
+++++..+..... ......||.+.+.+++..+...+
T Consensus 238 ~~~~~~~i~~~~~-~~~~~~G~p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 238 EPRHLELISDVYG-EDKGGDGSARRAIVALKMACEMA 273 (412)
T ss_dssp CHHHHHHHHHHHC-GGGTSCCCHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH-HhccCCCcHHHHHHHHHHHHHHH
Confidence 6666666666542 00000178888888888776554
No 199
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=9.2e-14 Score=128.78 Aligned_cols=126 Identities=12% Similarity=0.054 Sum_probs=90.4
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHcc-------CcEEEEeCc
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAE-------GGILFVDEA 271 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~-------~~il~iDEi 271 (438)
.+++|||||||||||++|+++++.+..+.. ....++.+++++ .. ..-..++.+++.+. ..|+||||+
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~-~~~d~~~l~~~~---~~--~~id~ir~li~~~~~~p~~~~~kvviIdea 91 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPP-KASDVLEIDPEG---EN--IGIDDIRTIKDFLNYSPELYTRKYVIVHDC 91 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCC-CTTTEEEECCSS---SC--BCHHHHHHHHHHHTSCCSSSSSEEEEETTG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhc-cCCCEEEEcCCc---CC--CCHHHHHHHHHHHhhccccCCceEEEeccH
Confidence 568999999999999999999986532211 234566666542 01 12234666666552 379999999
Q ss_pred ccccCCCCCCCchhHHHHHHHHHhhccC--CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHHHHHHH
Q 013706 272 YRLIPMQKADDKDYGIEALEEIMSVMDG--GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKILHIKM 349 (438)
Q Consensus 272 d~l~~~~~~~~~~~~~~~~~~ll~~~~~--~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l 349 (438)
|.|.. ...|.|+..|++ ...++|++++... .+ .|++++| +++|++|+.+++.+++...+
T Consensus 92 d~lt~-----------~a~naLLk~LEep~~~t~fIl~t~~~~--kl---~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 92 ERMTQ-----------QAANAFLKALEEPPEYAVIVLNTRRWH--YL---LPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp GGBCH-----------HHHHHTHHHHHSCCTTEEEEEEESCGG--GS---CHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred HHhCH-----------HHHHHHHHHHhCCCCCeEEEEEECChH--hC---hHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 99975 345899999987 3555555543321 22 7899999 99999999999999998876
No 200
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.39 E-value=1e-12 Score=125.62 Aligned_cols=238 Identities=16% Similarity=0.114 Sum_probs=134.5
Q ss_pred hHHHHHHHHhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHH-HHHHHHcCCcCC
Q 013706 153 KMDELENELSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARIL-GRLLYMVGILPT 231 (438)
Q Consensus 153 ~~~~~~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~l-a~~l~~~~~~~~ 231 (438)
..+.+...+..+.|++.+|..+.-.+-. |.. ..+...|+||.|+||| ||++|+++ ++.+..
T Consensus 204 ~~~~l~~sIapI~G~e~vK~aLll~L~G----------G~~-k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR------ 265 (506)
T 3f8t_A 204 PLTTFARAIAPLPGAEEVGKMLALQLFS----------CVG-KNSERLHVLLAGYPVV-CSEILHHVLDHLAPR------ 265 (506)
T ss_dssp HHHHHHHHHCCSTTCHHHHHHHHHHHTT----------CCS-SGGGCCCEEEESCHHH-HHHHHHHHHHHTCSS------
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHcC----------Ccc-ccCCceeEEEECCCCh-HHHHHHHHHHHhCCC------
Confidence 3445555666689999887776643210 000 0123348999999999 99999999 774421
Q ss_pred CCEEEeecc---cccccccccc-hHHHHHHHHHccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-------
Q 013706 232 DRVTEVQRT---DLVGEFVGHT-GPKTRRRIKEAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG------- 300 (438)
Q Consensus 232 ~~~~~~~~~---~~~~~~~g~~-~~~~~~~~~~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~------- 300 (438)
..+.....+ .+.....+.+ ...-...+..|.+||+||||++.+.+ ..+..|++.|+++
T Consensus 266 ~~ft~g~~ss~~gLt~s~r~~tG~~~~~G~l~LAdgGvl~lDEIn~~~~-----------~~qsaLlEaMEe~~VtI~G~ 334 (506)
T 3f8t_A 266 GVYVDLRRTELTDLTAVLKEDRGWALRAGAAVLADGGILAVDHLEGAPE-----------PHRWALMEAMDKGTVTVDGI 334 (506)
T ss_dssp EEEEEGGGCCHHHHSEEEEESSSEEEEECHHHHTTTSEEEEECCTTCCH-----------HHHHHHHHHHHHSEEEETTE
T ss_pred eEEecCCCCCccCceEEEEcCCCcccCCCeeEEcCCCeeehHhhhhCCH-----------HHHHHHHHHHhCCcEEECCE
Confidence 111111111 1111110000 01112456788999999999999987 4558999999864
Q ss_pred ----CEEEEEecCChhHH------HHhhhCcCccCCCCcceeC-CCCCHHHH---------HHHHHHHHhcccccccccc
Q 013706 301 ----KVVVIFAGYSEPMK------RVIASNEGFCRRVTKFFHF-NDFNSEEL---------AKILHIKMNNQTEDSLLYG 360 (438)
Q Consensus 301 ----~v~vi~~~~~~~~~------~~~~~~p~l~~R~~~~i~~-~~~~~~e~---------~~il~~~l~~~~~~~~~~~ 360 (438)
.+.||+|+|+.... .-+...+++++|||..+.+ +.|+.++- .+.++.+..--. .
T Consensus 335 ~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar------~ 408 (506)
T 3f8t_A 335 ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAI------R 408 (506)
T ss_dssp EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHH------H
T ss_pred EcCCCeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHH------h
Confidence 46788887765411 0113367899999775543 44443221 122222222110 0
Q ss_pred ccccccccHHHHHHHHHHHhhHh-----------hhccccccchHHHHHHHHHHhhccccCCCCChhhhhhccHHHHHHH
Q 013706 361 FKLHSSCSMDAIAALIEKETTEK-----------QRREMNGGLVDPMLVNARENLDLRLSFDCLDTDELRTITLEDLEAG 429 (438)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~~~i~~~d~~~a 429 (438)
..+.+.+++++...+...+.... ...+...|.+..++.-|...|..+. ...|+++|+.+|
T Consensus 409 ~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~g---------R~~V~~eDV~~A 479 (506)
T 3f8t_A 409 EHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRL---------SDDVEPEDVDIA 479 (506)
T ss_dssp HCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTT---------CSEECHHHHHHH
T ss_pred cCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcC---------cCCCCHHHHHHH
Confidence 12246677777766666554211 1123445777788776666653332 357899999999
Q ss_pred HHHHH
Q 013706 430 LKLLL 434 (438)
Q Consensus 430 ~~~~~ 434 (438)
+..+.
T Consensus 480 i~L~~ 484 (506)
T 3f8t_A 480 AELVD 484 (506)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98775
No 201
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.10 E-value=3.4e-10 Score=124.53 Aligned_cols=149 Identities=13% Similarity=0.126 Sum_probs=96.4
Q ss_pred HHHHHHhhhcChHHHHHHHHHHHHHhhhHHHH--------HhcCCC---------------CC-CCCCCc--eEEecCCC
Q 013706 156 ELENELSNIVGLHELKIQLRKWAKGMLLDERR--------KALGLK---------------VG-ARRPPH--MAFLGNPG 209 (438)
Q Consensus 156 ~~~~~l~~i~G~~~~~~~l~~~~~~~~~~~~~--------~~~~~~---------------~~-~~~~~~--~ll~GppG 209 (438)
.....|+++.|.+.+|+.+.+.+.+... ... ++.+.. ++ ...|++ +++|||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g 1092 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIE-KQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPES 1092 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHH-HHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTT
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHh-hccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCC
Confidence 3447899999999999998776554431 111 112211 11 224555 99999999
Q ss_pred CCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccc------------cccccc----chHHHHHHHHHc---cCcEEEEeC
Q 013706 210 TGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV------------GEFVGH----TGPKTRRRIKEA---EGGILFVDE 270 (438)
Q Consensus 210 tGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~------------~~~~g~----~~~~~~~~~~~a---~~~il~iDE 270 (438)
||||++|++++.+.... ..+.+.++..... ++|+++ +++.++.++..| ..+++|+||
T Consensus 1093 ~GKT~la~~~~~~~~~~----g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~ 1168 (1706)
T 3cmw_A 1093 SGKTTLTLQVIAAAQRE----GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDS 1168 (1706)
T ss_dssp SSHHHHHHHHHHHHHHT----TCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESC
T ss_pred CChHHHHHHHHHHhhhc----CCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCc
Confidence 99999999999988653 2354445544422 678888 788888888744 569999999
Q ss_pred cccccCCCC-----CC-CchhHHHHHHHHHhhccC----CCEEEEEecC
Q 013706 271 AYRLIPMQK-----AD-DKDYGIEALEEIMSVMDG----GKVVVIFAGY 309 (438)
Q Consensus 271 id~l~~~~~-----~~-~~~~~~~~~~~ll~~~~~----~~v~vi~~~~ 309 (438)
+++|.|.+. ++ +.....++++++|+.|+. ..|+||+++.
T Consensus 1169 ~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~~~n~ 1217 (1706)
T 3cmw_A 1169 VAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 1217 (1706)
T ss_dssp GGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred hHhcCcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEEEecc
Confidence 999999732 11 124556789999999987 7888886653
No 202
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.05 E-value=2.6e-10 Score=130.77 Aligned_cols=139 Identities=17% Similarity=0.147 Sum_probs=88.9
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHc-----------------
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA----------------- 261 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a----------------- 261 (438)
..++||+||||||||++|+.+.... ....++.++.+...+ ...+.+.++..
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~------~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~ 1334 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNS------SLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSD 1334 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSC------SSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSS
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcC------CCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCC
Confidence 4689999999999999995554321 122555666554332 12233333321
Q ss_pred -cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhh---ccC--------CCEEEEEecCChhHHHHhhhCcCccCCCCc
Q 013706 262 -EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV---MDG--------GKVVVIFAGYSEPMKRVIASNEGFCRRVTK 329 (438)
Q Consensus 262 -~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~---~~~--------~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~ 329 (438)
+.+||||||++.-...+.+ .....++++++++. ++. .++.+|+|+++...-.....+|+++||| .
T Consensus 1335 gk~~VlFiDEinmp~~d~yg--~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~ 1411 (2695)
T 4akg_A 1335 IKNLVLFCDEINLPKLDKYG--SQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-A 1411 (2695)
T ss_dssp SSCEEEEEETTTCSCCCSSS--CCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-E
T ss_pred CceEEEEecccccccccccC--chhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-e
Confidence 1269999999875444332 23344666666543 121 2478888887653000111289999999 8
Q ss_pred ceeCCCCCHHHHHHHHHHHHhcc
Q 013706 330 FFHFNDFNSEELAKILHIKMNNQ 352 (438)
Q Consensus 330 ~i~~~~~~~~e~~~il~~~l~~~ 352 (438)
+|.++.|+.+++..|+..++...
T Consensus 1412 vi~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1412 ILYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp EEECCCCTTTHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999888643
No 203
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.04 E-value=7.3e-09 Score=98.05 Aligned_cols=159 Identities=15% Similarity=0.118 Sum_probs=94.2
Q ss_pred hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706 162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 241 (438)
Q Consensus 162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 241 (438)
..++|.+...+.+.+.+.. ...++++||+|+|||++++.+++... .+.+++..
T Consensus 12 ~~~~gR~~el~~L~~~l~~------------------~~~v~i~G~~G~GKT~Ll~~~~~~~~---------~~~~~~~~ 64 (350)
T 2qen_A 12 EDIFDREEESRKLEESLEN------------------YPLTLLLGIRRVGKSSLLRAFLNERP---------GILIDCRE 64 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHH------------------CSEEEEECCTTSSHHHHHHHHHHHSS---------EEEEEHHH
T ss_pred HhcCChHHHHHHHHHHHhc------------------CCeEEEECCCcCCHHHHHHHHHHHcC---------cEEEEeec
Confidence 4578888877777765321 15799999999999999999987541 23333221
Q ss_pred c------------cc---ccc-----------------c-------cchHHHHHHHHH----ccCcEEEEeCcccccCCC
Q 013706 242 L------------VG---EFV-----------------G-------HTGPKTRRRIKE----AEGGILFVDEAYRLIPMQ 278 (438)
Q Consensus 242 ~------------~~---~~~-----------------g-------~~~~~~~~~~~~----a~~~il~iDEid~l~~~~ 278 (438)
. .. ..+ | .....+-..+.. ..+.+|+|||++.+....
T Consensus 65 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~ 144 (350)
T 2qen_A 65 LYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYG 144 (350)
T ss_dssp HHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBT
T ss_pred ccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccC
Confidence 1 00 000 0 011112122221 137899999999987511
Q ss_pred CCCCchhHHHHHHHHHhhccC-CCEEEEEecCChhH-HHH---hhhCcCccCCCCcceeCCCCCHHHHHHHHHHHHhc
Q 013706 279 KADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPM-KRV---IASNEGFCRRVTKFFHFNDFNSEELAKILHIKMNN 351 (438)
Q Consensus 279 ~~~~~~~~~~~~~~ll~~~~~-~~v~vi~~~~~~~~-~~~---~~~~p~l~~R~~~~i~~~~~~~~e~~~il~~~l~~ 351 (438)
. ... ...+..|...++. ..+.+|+++..... ..+ .....++..|+...+.+++++.+|..+++...+..
T Consensus 145 ~-~~~---~~~~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~ 218 (350)
T 2qen_A 145 S-RGG---KELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFRE 218 (350)
T ss_dssp T-TTT---HHHHHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred c-cch---hhHHHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHH
Confidence 0 001 1233333333332 46777777766543 333 12234566677679999999999999999887654
No 204
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.99 E-value=1.7e-09 Score=92.26 Aligned_cols=101 Identities=23% Similarity=0.262 Sum_probs=56.9
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHH-HcCCcCCCCEEEeecccccccccccchH-HHHHHHHH-ccCcEEEEeCcccc
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLY-MVGILPTDRVTEVQRTDLVGEFVGHTGP-KTRRRIKE-AEGGILFVDEAYRL 274 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~-a~~~il~iDEid~l 274 (438)
...+++|+||||||||+++++++..+. ..+. .++.++..++...+...... .....++. ....+|+|||++..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI----RGYFFDTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSE 112 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC----CCCEEEHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC----eEEEEEHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCC
Confidence 457899999999999999999999885 3232 33445555544332111000 00012222 25689999999854
Q ss_pred cCCCCCCCchhHHHHHHHHHhhcc-CCCEEEEEecC
Q 013706 275 IPMQKADDKDYGIEALEEIMSVMD-GGKVVVIFAGY 309 (438)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~ll~~~~-~~~v~vi~~~~ 309 (438)
.. +......+..++.... .+. .+|++|+
T Consensus 113 ~~------~~~~~~~l~~ll~~~~~~~~-~ii~tsn 141 (180)
T 3ec2_A 113 RL------SDWQRELISYIITYRYNNLK-STIITTN 141 (180)
T ss_dssp CC------CHHHHHHHHHHHHHHHHTTC-EEEEECC
T ss_pred cC------CHHHHHHHHHHHHHHHHcCC-CEEEEcC
Confidence 22 2333345555554443 344 4444443
No 205
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.97 E-value=1.2e-09 Score=95.18 Aligned_cols=72 Identities=19% Similarity=0.104 Sum_probs=47.0
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccccccc----chHHHHHHHHHccCcEEEEeCcccc
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGH----TGPKTRRRIKEAEGGILFVDEAYRL 274 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~a~~~il~iDEid~l 274 (438)
+.+++|+||||||||++|+++++.+...+ .+++.++++++...+... ........+. ...+|||||++..
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~ 127 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANELAKRN----VSSLIVYVPELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAE 127 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHTTT----CCEEEEEHHHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcC----CeEEEEEhHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 37899999999999999999999886433 356667776654433211 1112222222 2369999999775
Q ss_pred cC
Q 013706 275 IP 276 (438)
Q Consensus 275 ~~ 276 (438)
..
T Consensus 128 ~~ 129 (202)
T 2w58_A 128 AM 129 (202)
T ss_dssp --
T ss_pred cC
Confidence 43
No 206
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.91 E-value=4.2e-09 Score=99.69 Aligned_cols=161 Identities=8% Similarity=-0.056 Sum_probs=108.2
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHc-------cCcEEEEeC
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA-------EGGILFVDE 270 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a-------~~~il~iDE 270 (438)
.++.+|||||+|+||++.++.+++.+...+... ...+.++ | ...++++++.+ ...|++|||
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~---------~--~~~~~~l~~~~~~~plf~~~kvvii~~ 84 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEE-HHTFSID---------P--NTDWNAIFSLCQAMSLFASRQTLLLLL 84 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCE-EEEEECC---------T--TCCHHHHHHHHHHHHHCCSCEEEEEEC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCe-eEEEEec---------C--CCCHHHHHHHhcCcCCccCCeEEEEEC
Confidence 356789999999999999999999876433110 0111221 1 12334444433 357999999
Q ss_pred ccc-ccCCCCCCCchhHHHHHHHHHhhccC---CCEEEEEecCChhH---HHHhhhCcCccCCCCcceeCCCCCHHHHHH
Q 013706 271 AYR-LIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIFAGYSEPM---KRVIASNEGFCRRVTKFFHFNDFNSEELAK 343 (438)
Q Consensus 271 id~-l~~~~~~~~~~~~~~~~~~ll~~~~~---~~v~vi~~~~~~~~---~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~ 343 (438)
+|. +... ..+.|+..+++ +.++|+++++.++. ..+ .+++.+|. .+++|.+++.+++..
T Consensus 85 ~~~kl~~~-----------~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~---~~~i~sr~-~~~~~~~l~~~~l~~ 149 (343)
T 1jr3_D 85 PENGPNAA-----------INEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAW---FTALANRS-VQVTCQTPEQAQLPR 149 (343)
T ss_dssp CSSCCCTT-----------HHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHH---HHHHTTTC-EEEEECCCCTTHHHH
T ss_pred CCCCCChH-----------HHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHH---HHHHHhCc-eEEEeeCCCHHHHHH
Confidence 998 7643 33778888876 44555555543321 122 46678887 789999999999999
Q ss_pred HHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHH
Q 013706 344 ILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNAREN 403 (438)
Q Consensus 344 il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~ 403 (438)
.++..+.+.. ..++++++..++... .||.+.+.+.+++....
T Consensus 150 ~l~~~~~~~g-----------~~i~~~a~~~l~~~~-------~gdl~~~~~elekl~l~ 191 (343)
T 1jr3_D 150 WVAARAKQLN-----------LELDDAANQVLCYCY-------EGNLLALAQALERLSLL 191 (343)
T ss_dssp HHHHHHHHTT-----------CEECHHHHHHHHHSS-------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-----------CCCCHHHHHHHHHHh-------chHHHHHHHHHHHHHHh
Confidence 9999887642 345678888877654 67778888888877554
No 207
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.89 E-value=5.8e-10 Score=91.88 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=45.6
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHccCcEEEEeCcccccC
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDEAYRLIP 276 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l~~ 276 (438)
....++|+||+|+|||+++++++..+...+ ...+.++..++... . + ..+..+|+|||++.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g----~~~~~~~~~~~~~~----------~-~-~~~~~lLilDE~~~~~~ 97 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAG----KNAAYIDAASMPLT----------D-A-AFEAEYLAVDQVEKLGN 97 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTT----CCEEEEETTTSCCC----------G-G-GGGCSEEEEESTTCCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcC----CcEEEEcHHHhhHH----------H-H-HhCCCEEEEeCccccCh
Confidence 345799999999999999999999886422 24566666655433 0 1 12568999999988654
No 208
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.88 E-value=5.3e-08 Score=92.28 Aligned_cols=156 Identities=15% Similarity=0.192 Sum_probs=92.0
Q ss_pred hhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccc
Q 013706 162 SNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTD 241 (438)
Q Consensus 162 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 241 (438)
..++|.+...+.+.+ +. . +.++++||+|+|||++++.+++.+.. ..+.+++..
T Consensus 13 ~~~~gR~~el~~L~~-l~------------------~-~~v~i~G~~G~GKT~L~~~~~~~~~~-------~~~~~~~~~ 65 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LR------------------A-PITLVLGLRRTGKSSIIKIGINELNL-------PYIYLDLRK 65 (357)
T ss_dssp GGSCCCHHHHHHHHH-TC------------------S-SEEEEEESTTSSHHHHHHHHHHHHTC-------CEEEEEGGG
T ss_pred HHhcChHHHHHHHHH-hc------------------C-CcEEEECCCCCCHHHHHHHHHHhcCC-------CEEEEEchh
Confidence 456788765555554 21 1 48999999999999999999987642 233343322
Q ss_pred c-----------c---------------------ccc-----------c------ccchHHHHHHHHHc--cCcEEEEeC
Q 013706 242 L-----------V---------------------GEF-----------V------GHTGPKTRRRIKEA--EGGILFVDE 270 (438)
Q Consensus 242 ~-----------~---------------------~~~-----------~------g~~~~~~~~~~~~a--~~~il~iDE 270 (438)
. . ... + ...-..+-..+.+. .+.+|||||
T Consensus 66 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe 145 (357)
T 2fna_A 66 FEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDE 145 (357)
T ss_dssp GTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEET
T ss_pred hccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEEC
Confidence 1 0 000 0 01111222333332 367999999
Q ss_pred cccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhH-HHH---hhhCcCccCCCCcceeCCCCCHHHHHHHHH
Q 013706 271 AYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPM-KRV---IASNEGFCRRVTKFFHFNDFNSEELAKILH 346 (438)
Q Consensus 271 id~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~-~~~---~~~~p~l~~R~~~~i~~~~~~~~e~~~il~ 346 (438)
++.+..... .+. ...+..+.... ..+.+|++++.... ..+ .....++..|+...+.+++++.+|..+++.
T Consensus 146 ~~~~~~~~~---~~~-~~~l~~~~~~~--~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~ 219 (357)
T 2fna_A 146 AQELVKLRG---VNL-LPALAYAYDNL--KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLR 219 (357)
T ss_dssp GGGGGGCTT---CCC-HHHHHHHHHHC--TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHH
T ss_pred HHHhhccCc---hhH-HHHHHHHHHcC--CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHH
Confidence 999875211 111 12223333221 46777777766543 333 122345666777899999999999999998
Q ss_pred HHHh
Q 013706 347 IKMN 350 (438)
Q Consensus 347 ~~l~ 350 (438)
..+.
T Consensus 220 ~~~~ 223 (357)
T 2fna_A 220 RGFQ 223 (357)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 209
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.79 E-value=7.4e-09 Score=96.12 Aligned_cols=73 Identities=14% Similarity=0.185 Sum_probs=46.8
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHH-HcCCcCCCCEEEeecccccccccccc-hHHHHHHHHH-ccCcEEEEeCccccc
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLY-MVGILPTDRVTEVQRTDLVGEFVGHT-GPKTRRRIKE-AEGGILFVDEAYRLI 275 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~-a~~~il~iDEid~l~ 275 (438)
..+++|+||||||||.+|+++++.+. ..+. +++.++.++++..+.+.. .......+.. ....+|||||++...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~----~v~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGV----STTLLHFPSFAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAEQ 227 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCC----CEEEEEHHHHHHHHHCCCC----CCTTHHHHTSSEEEEETCCC--
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCC----cEEEEEHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCC
Confidence 57899999999999999999999887 6443 566667666655433211 1111111222 234799999997654
No 210
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.76 E-value=8.8e-09 Score=88.86 Aligned_cols=128 Identities=19% Similarity=0.159 Sum_probs=70.6
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCC-cCC-CCEEEeeccccccccc-------------cc--chHHHHHHH--H
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGI-LPT-DRVTEVQRTDLVGEFV-------------GH--TGPKTRRRI--K 259 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~-~~~-~~~~~~~~~~~~~~~~-------------g~--~~~~~~~~~--~ 259 (438)
+...+++|+||||||++|..++........ ... .+++..+..++...++ ++ ........+ .
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc
Confidence 456889999999999999887554320000 011 2333333333322221 11 112333332 2
Q ss_pred HccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC---CCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCC
Q 013706 260 EAEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG---GKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDF 336 (438)
Q Consensus 260 ~a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~---~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~ 336 (438)
..+++||+|||++.+.+.+...... ..++..++. ..+-+|++|.+.. . .+.+++.|++..++++++
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~------~rll~~l~~~r~~~~~iil~tq~~~--~---l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKI------PENVQWLNTHRHQGIDIFVLTQGPK--L---LDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCC------CHHHHGGGGTTTTTCEEEEEESCGG--G---BCHHHHTTEEEEEEEEEC
T ss_pred ccCceEEEEEChhhhccCccccchh------HHHHHHHHhcCcCCeEEEEECCCHH--H---HhHHHHHHhheEEEEcCc
Confidence 3348999999999997655321111 134444442 3345555555532 2 277789999999988775
Q ss_pred C
Q 013706 337 N 337 (438)
Q Consensus 337 ~ 337 (438)
.
T Consensus 154 ~ 154 (199)
T 2r2a_A 154 K 154 (199)
T ss_dssp S
T ss_pred c
Confidence 3
No 211
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.72 E-value=1.4e-08 Score=86.45 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=23.3
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
..++|||||||||||++|.++++.+.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34699999999999999999999874
No 212
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.65 E-value=2.7e-08 Score=91.06 Aligned_cols=105 Identities=16% Similarity=0.190 Sum_probs=58.9
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHH---HHHHHccCcEEEEeCccccc
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTR---RRIKEAEGGILFVDEAYRLI 275 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~a~~~il~iDEid~l~ 275 (438)
...++|+||||||||++|..++...+. ...++.....+.++.+..+.+..+. +.+.+.. +|||||++.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~-----~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~ 195 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGG-----KDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVI 195 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHT-----TSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCC-----CEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccc
Confidence 345799999999999999999986221 1234444222222222233333332 3333333 99999999997
Q ss_pred CCCCCCC-----chhHHHHHHHHHhhccCCCEEEEEecCC
Q 013706 276 PMQKADD-----KDYGIEALEEIMSVMDGGKVVVIFAGYS 310 (438)
Q Consensus 276 ~~~~~~~-----~~~~~~~~~~ll~~~~~~~v~vi~~~~~ 310 (438)
+.....+ .....+.+..|...+....+.+|+++++
T Consensus 196 ~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp 235 (331)
T 2vhj_A 196 GAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (331)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred cccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 6443211 2234456666666666556677777554
No 213
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.64 E-value=1.7e-08 Score=90.25 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=22.5
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l 223 (438)
..+++||||||||||++|++||+.+
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhh
Confidence 4579999999999999999999864
No 214
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.45 E-value=7e-07 Score=103.55 Aligned_cols=139 Identities=14% Similarity=0.119 Sum_probs=82.1
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHH---------------c-
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKE---------------A- 261 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------------a- 261 (438)
...++||+||||||||+++..+...+ ...+++.++.+.-.. ...+.+.++. +
T Consensus 1303 ~~~pvLL~GptGtGKT~li~~~L~~l------~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~ 1370 (3245)
T 3vkg_A 1303 EHRPLILCGPPGSGKTMTLTSTLRAF------PDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPT 1370 (3245)
T ss_dssp TTCCCEEESSTTSSHHHHHHHHGGGC------TTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEES
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHhC------CCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCC
Confidence 35789999999999997765443221 112455666554321 1222222321 1
Q ss_pred ---cCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhh---ccC--------CCEEEEEecCChhHHHHhhhCcCccCCC
Q 013706 262 ---EGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSV---MDG--------GKVVVIFAGYSEPMKRVIASNEGFCRRV 327 (438)
Q Consensus 262 ---~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~---~~~--------~~v~vi~~~~~~~~~~~~~~~p~l~~R~ 327 (438)
+..|+||||++.-.+...+ .....+++.+++.. ++. .++.+|+|.++...-.....+|++.|||
T Consensus 1371 ~~Gk~~VlFiDDiNmp~~D~yG--tQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F 1448 (3245)
T 3vkg_A 1371 QLGKWLVVFCDEINLPSTDKYG--TQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA 1448 (3245)
T ss_dssp STTCEEEEEETTTTCCCCCTTS--CCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC
T ss_pred cCCceEEEEecccCCCCccccc--cccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc
Confidence 1159999999865443322 22233445555442 111 2467777765542111111278999999
Q ss_pred CcceeCCCCCHHHHHHHHHHHHhc
Q 013706 328 TKFFHFNDFNSEELAKILHIKMNN 351 (438)
Q Consensus 328 ~~~i~~~~~~~~e~~~il~~~l~~ 351 (438)
.++.++.|+.+++..|+..++..
T Consensus 1449 -~vi~i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1449 -PILLVDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp -CEEECCCCCHHHHHHHHHHHHHH
T ss_pred -eEEEeCCCCHHHHHHHHHHHHHH
Confidence 67999999999999998877654
No 215
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.42 E-value=1.2e-06 Score=74.22 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=22.0
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~ 224 (438)
.+.|.||+|+||||+++.++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999874
No 216
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.33 E-value=4e-07 Score=104.90 Aligned_cols=129 Identities=18% Similarity=0.120 Sum_probs=82.5
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHc--cCcEEEEeCcccccCC
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPM 277 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a--~~~il~iDEid~l~~~ 277 (438)
.+.++.||||||||++++.+|+.++. +++.+++++-... ..+..+|..+ .|+.+++||++++.+.
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~-------~~v~~nc~e~ld~------~~lg~~~~g~~~~Gaw~~~DE~nr~~~e 712 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGR-------VVVVFNCDDSFDY------QVLSRLLVGITQIGAWGCFDEFNRLDEK 712 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTC-------CCEEEETTSSCCH------HHHHHHHHHHHHHTCEEEEETTTSSCHH
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCC-------cEEEEECCCCCCh------hHhhHHHHHHHhcCCEeeehhhhhcChH
Confidence 57889999999999999999998877 8888898764432 3345556544 4799999999988752
Q ss_pred CCCCCchhHHHHHHHHHhhccC--------C-------CEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHH
Q 013706 278 QKADDKDYGIEALEEIMSVMDG--------G-------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELA 342 (438)
Q Consensus 278 ~~~~~~~~~~~~~~~ll~~~~~--------~-------~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~ 342 (438)
.. +.....+..+...+.+ | ...|+++.++. ....-..+++|++|| ..+.+..|+.+.+.
T Consensus 713 vL----s~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPg-y~g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ 786 (2695)
T 4akg_A 713 VL----SAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPG-YNGRSELPENLKKSF-REFSMKSPQSGTIA 786 (2695)
T ss_dssp HH----HHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCC-SSSSCCCCHHHHTTE-EEEECCCCCHHHHH
T ss_pred HH----HHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCC-ccCcccccHHHHhhe-EEEEeeCCCHHHHH
Confidence 11 0000111112222211 1 22344554432 211112256788899 78999999999888
Q ss_pred HHHHH
Q 013706 343 KILHI 347 (438)
Q Consensus 343 ~il~~ 347 (438)
+|+-.
T Consensus 787 ei~l~ 791 (2695)
T 4akg_A 787 EMILQ 791 (2695)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88643
No 217
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.31 E-value=1.4e-06 Score=97.44 Aligned_cols=109 Identities=13% Similarity=0.159 Sum_probs=66.8
Q ss_pred CCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccc----ccccc------------cch---HHHHH
Q 013706 196 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV----GEFVG------------HTG---PKTRR 256 (438)
Q Consensus 196 ~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~----~~~~g------------~~~---~~~~~ 256 (438)
..++.+++|+||||||||++|.+++.+....|. ....++..+.+ .+..| ..+ ..++.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~----~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~ 1499 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK----TCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDA 1499 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTC----CEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC----cEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHH
Confidence 346778999999999999999999988765432 34444443221 22223 122 23333
Q ss_pred HHHHccCcEEEEeCcccccCCCC-----CCCch-hHHHHHHHHHhhc----cCCCEEEEEec
Q 013706 257 RIKEAEGGILFVDEAYRLIPMQK-----ADDKD-YGIEALEEIMSVM----DGGKVVVIFAG 308 (438)
Q Consensus 257 ~~~~a~~~il~iDEid~l~~~~~-----~~~~~-~~~~~~~~ll~~~----~~~~v~vi~~~ 308 (438)
..+.....+|||||++.+.+.+. ++++. ...++++++|..| ....+++|+++
T Consensus 1500 lvr~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~v~VI~tN 1561 (2050)
T 3cmu_A 1500 LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 1561 (2050)
T ss_dssp HHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHhcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCCcEEEEEc
Confidence 44556789999999999987421 11111 1344555555554 45677777775
No 218
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.28 E-value=5.6e-07 Score=65.91 Aligned_cols=78 Identities=22% Similarity=0.223 Sum_probs=61.0
Q ss_pred eCCCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCC
Q 013706 332 HFNDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFD 411 (438)
Q Consensus 332 ~~~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~ 411 (438)
.-.+|+.++|.+||+.++++. .+..+++.+.++..+.++ +|++|.+++..|...+..+.
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~---------~l~~dvdl~~LA~~T~G~---------SGADL~~l~~eAa~~alr~~--- 65 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKM---------NLTRGINLRKIAELMPGA---------SGAEVKGVCTEAGMYALRER--- 65 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTS---------EECTTCCCHHHHHTCSSC---------CHHHHHHHHHHHHHHHHHTT---
T ss_pred CCCCcCHHHHHHHHHHHHcCC---------CCCcccCHHHHHHHcCCC---------CHHHHHHHHHHHHHHHHHHc---
Confidence 457899999999999999875 344566766666666544 47888999999888775542
Q ss_pred CCChhhhhhccHHHHHHHHHHHHhc
Q 013706 412 CLDTDELRTITLEDLEAGLKLLLRL 436 (438)
Q Consensus 412 ~~~~~~~~~i~~~d~~~a~~~~~~~ 436 (438)
...|+.+||.+|++.++|.
T Consensus 66 ------~~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 66 ------RVHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp ------CSEECHHHHHHHHHHHHCC
T ss_pred ------CCCCCHHHHHHHHHHHccC
Confidence 3679999999999999884
No 219
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.19 E-value=1.9e-06 Score=62.06 Aligned_cols=76 Identities=21% Similarity=0.201 Sum_probs=58.7
Q ss_pred CCCCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCC
Q 013706 334 NDFNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCL 413 (438)
Q Consensus 334 ~~~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~ 413 (438)
|.|+.++|.+||+.++++. .+..+++.+.++..+.++ +|++|.+++..|...+..+
T Consensus 1 plPd~~~R~~Il~~~l~~~---------~~~~~~dl~~la~~t~G~---------SGADi~~l~~eA~~~a~~~------ 56 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKM---------NLTRGINLRKIAELMPGA---------SGAEVKGVCTEAGMYALRE------ 56 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTS---------EECTTCCHHHHHHTCTTC---------CHHHHHHHHHHHHHHHHHT------
T ss_pred CcCCHHHHHHHHHHHhcCC---------CCCCccCHHHHHHHcCCC---------CHHHHHHHHHHHHHHHHHh------
Confidence 6899999999999999875 344566766666666544 4788899999998887544
Q ss_pred ChhhhhhccHHHHHHHHHHHHhc
Q 013706 414 DTDELRTITLEDLEAGLKLLLRL 436 (438)
Q Consensus 414 ~~~~~~~i~~~d~~~a~~~~~~~ 436 (438)
+...|+.+||.+|++.+...
T Consensus 57 ---~~~~i~~~d~~~Al~~v~~~ 76 (78)
T 3kw6_A 57 ---RRVHVTQEDFEMAVAKVMQK 76 (78)
T ss_dssp ---TCSEECHHHHHHHHHHHHC-
T ss_pred ---CCCCCCHHHHHHHHHHHHhc
Confidence 23579999999999998753
No 220
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.11 E-value=1.5e-06 Score=74.09 Aligned_cols=26 Identities=15% Similarity=0.062 Sum_probs=20.4
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.-++++||||+|||+++..++..+..
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35789999999999999666665543
No 221
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.88 E-value=2.1e-05 Score=91.59 Aligned_cols=121 Identities=17% Similarity=0.096 Sum_probs=80.6
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHc--cCcEEEEeCcccccCC
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEA--EGGILFVDEAYRLIPM 277 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a--~~~il~iDEid~l~~~ 277 (438)
.+..+.||+|||||.+++.+|+.++. +++.++|++-... ..+.++|.-+ .|+...+||++++..
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr-------~~~vfnC~~~~d~------~~~g~i~~G~~~~GaW~cfDEfNrl~~- 670 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGR-------FVLVFCCDEGFDL------QAMSRIFVGLCQCGAWGCFDEFNRLEE- 670 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTC-------CEEEEECSSCCCH------HHHHHHHHHHHHHTCEEEEETTTSSCH-
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCC-------eEEEEeCCCCCCH------HHHHHHHhhHhhcCcEEEehhhhcCCH-
Confidence 45678999999999999999999886 8888888764332 2333444433 578999999998864
Q ss_pred CCCCCchhHHHHHHHHHhhcc-----------------CC------CEEEEEecCChhHHHHhhhCcCccCCCCcceeCC
Q 013706 278 QKADDKDYGIEALEEIMSVMD-----------------GG------KVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFN 334 (438)
Q Consensus 278 ~~~~~~~~~~~~~~~ll~~~~-----------------~~------~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~ 334 (438)
++++.+.+++. +. ...++++.++ .+...-..++.|+.|| +.|.++
T Consensus 671 ----------~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNp-gY~gr~eLP~nLk~lF-r~v~m~ 738 (3245)
T 3vkg_A 671 ----------RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNP-GYAGRSNLPDNLKKLF-RSMAMI 738 (3245)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCC-CGGGCCCSCHHHHTTE-EEEECC
T ss_pred ----------HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCC-CccCcccChHHHHhhc-EEEEEe
Confidence 33333333221 21 2345555443 2221112367788899 779999
Q ss_pred CCCHHHHHHHHH
Q 013706 335 DFNSEELAKILH 346 (438)
Q Consensus 335 ~~~~~e~~~il~ 346 (438)
.|+.+.+.+|+-
T Consensus 739 ~Pd~~~i~ei~L 750 (3245)
T 3vkg_A 739 KPDREMIAQVML 750 (3245)
T ss_dssp SCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 999988888864
No 222
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.86 E-value=9.1e-05 Score=65.25 Aligned_cols=27 Identities=30% Similarity=0.344 Sum_probs=22.8
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
+...++|+||||+|||++++.++..+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 445688999999999999999997653
No 223
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.85 E-value=7.2e-05 Score=73.33 Aligned_cols=88 Identities=18% Similarity=0.232 Sum_probs=53.3
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccc----cccccccchHHHHHHHHH---------------
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL----VGEFVGHTGPKTRRRIKE--------------- 260 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~--------------- 260 (438)
.++++.||||||||+++..++..+...+. ..++.+.++.. +.+..|.....+.+.+..
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~---~~il~~a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~ 122 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTGE---TGIILAAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKE 122 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTC---CCEEEEESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECS
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCC---ceEEEecCcHHHHHHHHhhhccchhhHHHHhccCcccccccchhcccc
Confidence 38999999999999999999998876443 13333333321 111122222222233321
Q ss_pred ----ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCC
Q 013706 261 ----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK 301 (438)
Q Consensus 261 ----a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~ 301 (438)
....+|+|||+..+.. ..+..|+..+..+.
T Consensus 123 ~~~~~~~~~iiiDE~~~~~~-----------~~~~~l~~~~~~~~ 156 (459)
T 3upu_A 123 VPDLAKCRVLICDEVSMYDR-----------KLFKILLSTIPPWC 156 (459)
T ss_dssp CCCCSSCSEEEESCGGGCCH-----------HHHHHHHHHSCTTC
T ss_pred cccccCCCEEEEECchhCCH-----------HHHHHHHHhccCCC
Confidence 1247999999987754 34577777776444
No 224
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.85 E-value=9.2e-06 Score=81.65 Aligned_cols=91 Identities=23% Similarity=0.346 Sum_probs=55.3
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccc----ccccccchHHHHHHHHHc------------c
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV----GEFVGHTGPKTRRRIKEA------------E 262 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~a------------~ 262 (438)
...+++.||||||||++++.++..+...+. .++.+.++.-. .+..|.....+.+.+... .
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~----~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~~~~~~~~~~~~ 279 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGL----EVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQGFRHNHLEPAP 279 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTC----CEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETTEESCSSSSCCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCC----eEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcchhhhhhccccc
Confidence 467899999999999999999998876442 44444333211 111222222233333111 2
Q ss_pred CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEE
Q 013706 263 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVV 304 (438)
Q Consensus 263 ~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~v 304 (438)
..+|+|||+..+.. ..+..|+..+..+..++
T Consensus 280 ~dvlIIDEasml~~-----------~~~~~Ll~~~~~~~~li 310 (574)
T 3e1s_A 280 YDLLIVDEVSMMGD-----------ALMLSLLAAVPPGARVL 310 (574)
T ss_dssp CSEEEECCGGGCCH-----------HHHHHHHTTSCTTCEEE
T ss_pred CCEEEEcCccCCCH-----------HHHHHHHHhCcCCCEEE
Confidence 37999999987754 45577777776544333
No 225
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.73 E-value=0.00093 Score=59.73 Aligned_cols=135 Identities=10% Similarity=0.044 Sum_probs=64.0
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc-ccccchHHHHHHHHHccCcEEEEeCcccccCCCC
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQK 279 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~~ 279 (438)
.+++.||||+|||++|+.||+.++. .++..+....... .++...... . +.+.-.-.|+|+.+-... .
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~-------~~i~~D~~~~~~~~~~~t~~~~~-~--e~~~~~~~~~~~~~~~~~--~ 70 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGW-------PVVALDRVQCCPQIATGSGRPLE-S--ELQSTRRIYLDSRPLTEG--I 70 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC-------CEEECCSGGGCGGGTTTTTCCCG-G--GGTTCCEECSCCCCGGGC--S
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCC-------eEEeccHHhccCCCccccCCCCH-H--HHhCCCeEEEeeeccccc--c
Confidence 4789999999999999999998754 5554443211111 111110000 0 111123466665432110 0
Q ss_pred CCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCCC-cceeCCCCCHHHHHHHHHHHH
Q 013706 280 ADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVT-KFFHFNDFNSEELAKILHIKM 349 (438)
Q Consensus 280 ~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~-~~i~~~~~~~~e~~~il~~~l 349 (438)
-+...+...+.+.+ ..+..+..+|+..++...+..++. ...+..+++ ..+.+..|..+.+.+-+....
T Consensus 71 ~~~~~f~~~~~~~i-~~~~~g~~vIl~gg~~~~~~~~~~-~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~ 139 (253)
T 2ze6_A 71 LDAESAHRRLIFEV-DWRKSEEGLILEGGSISLLNCMAK-SPFWRSGFQWHVKRLRLGDSDAFLTRAKQRV 139 (253)
T ss_dssp CCHHHHHHHHHHHH-HTTTTSSEEEEEECCHHHHHHHHH-CTTTTSSCEEEEEECCCCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH-HHHhCCCCeEEeccHHHHHHHHHh-cccccccCceEEEEecchhHHHHHHHHHHHH
Confidence 01122333444455 555666655555444333333322 111112332 456677776566655554443
No 226
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=97.72 E-value=2.1e-05 Score=57.22 Aligned_cols=74 Identities=9% Similarity=0.134 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCCh
Q 013706 336 FNSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDT 415 (438)
Q Consensus 336 ~~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~ 415 (438)
++.++|.+||+.++++. .+..+++.+.++..+. +.+|++|.+++..|...+..+.
T Consensus 1 ~d~~~R~~Il~~~l~~~---------~~~~~vdl~~la~~t~---------G~SGADi~~l~~eA~~~a~~~~------- 55 (83)
T 3aji_B 1 MDRRQKRLIFSTITSKM---------NLSEEVDLEDYVARPD---------KISGADINSICQESGMLAVREN------- 55 (83)
T ss_dssp CCHHHHHHHHHHHHTTS---------CBCTTCCTHHHHTSSC---------CCCHHHHHHHHHHHHHGGGTSC-------
T ss_pred CCHHHHHHHHHHHhCCC---------CCCcccCHHHHHHHcC---------CCCHHHHHHHHHHHHHHHHHhc-------
Confidence 46789999999999865 3345566666665555 4558888999999988875442
Q ss_pred hhhhhccHHHHHHHHHHHHhc
Q 013706 416 DELRTITLEDLEAGLKLLLRL 436 (438)
Q Consensus 416 ~~~~~i~~~d~~~a~~~~~~~ 436 (438)
...|+.+||..|++.++|.
T Consensus 56 --~~~i~~~df~~Al~~~~ps 74 (83)
T 3aji_B 56 --RYIVLAKDFEKAYKTVIKK 74 (83)
T ss_dssp --CSSBCHHHHHHHHHHHCC-
T ss_pred --cCCcCHHHHHHHHHHHccC
Confidence 3579999999999999884
No 227
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.71 E-value=3.7e-05 Score=70.80 Aligned_cols=98 Identities=16% Similarity=0.232 Sum_probs=52.0
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc-ccccchHHHHHHHHHccCcEEEEeCcccccCCC
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQ 278 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~ 278 (438)
+.+++.||||+|||++|+.+|+.++. .++..+...+... .+|. .+....-.. .-.-.|+|..+-...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~-------~iis~Ds~qvy~~~~igT-akp~~~e~~--gvph~lid~~~~~~~-- 73 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPC-------ELISVDSALIYRGMDIGT-AKPSRELLA--RYPHRLIDIRDPAES-- 73 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCE-------EEEEECTTTTBTTCCTTT-TCCCHHHHH--HSCEETSSCBCTTSC--
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC-------cEEeccchhhhcCCCccc-CCCCHHHHc--CCCEEEeeccCcccc--
Confidence 46889999999999999999997753 5555544322221 1221 111111111 113366776543321
Q ss_pred CCCCchhHHHHHHHHHhhccCCCEEEEEecCC
Q 013706 279 KADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 310 (438)
Q Consensus 279 ~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~ 310 (438)
-+...+...+...+-.....++++|++.++.
T Consensus 74 -~~~~~F~~~a~~~i~~i~~~g~~~IlvGGt~ 104 (323)
T 3crm_A 74 -YSAAEFRADALAAMAKATARGRIPLLVGGTM 104 (323)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred -cCHHHHHHHHHHHHHHHHHcCCeEEEECCch
Confidence 1113343444444444455666666666544
No 228
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.71 E-value=0.00016 Score=68.30 Aligned_cols=107 Identities=16% Similarity=0.224 Sum_probs=58.4
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc----cccc-----------chHHHHHHHH---
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE----FVGH-----------TGPKTRRRIK--- 259 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~----~~g~-----------~~~~~~~~~~--- 259 (438)
+..-++++||||+|||++|..++..+...+ .+++.++....... .+|. +...+...++
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g----~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~ 148 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAG----GTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLV 148 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCC----CeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHH
Confidence 445688999999999999999988765432 24454544332111 1111 1122222222
Q ss_pred -HccCcEEEEeCcccccCCCCCC---Cc-------hhHHHHHHHHHhhccCCCEEEEEec
Q 013706 260 -EAEGGILFVDEAYRLIPMQKAD---DK-------DYGIEALEEIMSVMDGGKVVVIFAG 308 (438)
Q Consensus 260 -~a~~~il~iDEid~l~~~~~~~---~~-------~~~~~~~~~ll~~~~~~~v~vi~~~ 308 (438)
.....+|+||.+..+.+...-. .+ ......+..|.......++.||+++
T Consensus 149 ~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~n 208 (366)
T 1xp8_A 149 RSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFIN 208 (366)
T ss_dssp TTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred hcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 2345899999999998532110 00 1112334444444455566666664
No 229
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=97.71 E-value=2e-05 Score=57.92 Aligned_cols=73 Identities=14% Similarity=0.118 Sum_probs=55.1
Q ss_pred CHHHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChh
Q 013706 337 NSEELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTD 416 (438)
Q Consensus 337 ~~~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~ 416 (438)
+.++|.+||+.++++. .+..+++.+.++..+.++ .|++|.+++..|...+..+
T Consensus 2 d~~~R~~Il~~~~~~~---------~~~~dvdl~~lA~~t~G~---------SGADl~~l~~eAa~~a~r~--------- 54 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSM---------SVERGIRWELISRLCPNS---------TGAELRSVCTEAGMFAIRA--------- 54 (88)
T ss_dssp CSSHHHHHHHHHHTTS---------CBCSCCCHHHHHHTCSSC---------CHHHHHHHHHHHHHHHHHH---------
T ss_pred CHHHHHHHHHHHHCCC---------CCCCccCHHHHHHHcCCC---------cHHHHHHHHHHHHHHHHHh---------
Confidence 5678999999999875 344667777766665544 4788899999888877554
Q ss_pred hhhhccHHHHHHHHHHHHhc
Q 013706 417 ELRTITLEDLEAGLKLLLRL 436 (438)
Q Consensus 417 ~~~~i~~~d~~~a~~~~~~~ 436 (438)
....|+.+||.+|++.+.+.
T Consensus 55 ~~~~i~~~df~~Al~~v~~~ 74 (88)
T 3vlf_B 55 RRKVATEKDFLKAVDKVISG 74 (88)
T ss_dssp SCSSBCHHHHHHHHHHHTC-
T ss_pred ccccCCHHHHHHHHHHHhcC
Confidence 22469999999999998763
No 230
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.71 E-value=0.0003 Score=61.04 Aligned_cols=74 Identities=19% Similarity=0.180 Sum_probs=45.6
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecc------ccccc----------cccc--chHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT------DLVGE----------FVGH--TGPKTRRRIKE 260 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~------~~~~~----------~~g~--~~~~~~~~~~~ 260 (438)
..++++.|+||||||+++-.+|..+...|.. ..++.+++. .+... +-|. .+..+..++.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~--V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~- 82 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVR--VMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK- 82 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCC--EEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH-
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCC--EEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh-
Confidence 3579999999999999999999988776641 122333320 11111 1111 1233444444
Q ss_pred ccCcEEEEeCccccc
Q 013706 261 AEGGILFVDEAYRLI 275 (438)
Q Consensus 261 a~~~il~iDEid~l~ 275 (438)
.++.+++|||+....
T Consensus 83 ~~pdlvIVDElG~~~ 97 (228)
T 2r8r_A 83 AAPSLVLVDELAHTN 97 (228)
T ss_dssp HCCSEEEESCTTCBC
T ss_pred cCCCEEEEeCCCCCC
Confidence 367899999998753
No 231
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.70 E-value=0.00021 Score=62.34 Aligned_cols=28 Identities=18% Similarity=-0.191 Sum_probs=22.8
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYMVG 227 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~~~ 227 (438)
.-++++||||+|||+++..++..+...+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g 40 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYAD 40 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 4467889999999999999888775544
No 232
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.67 E-value=0.00036 Score=67.06 Aligned_cols=30 Identities=30% Similarity=0.380 Sum_probs=25.3
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 227 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~ 227 (438)
++.-+++.||+|+||||++..+|..+...+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G 125 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG 125 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 355678999999999999999999886544
No 233
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.63 E-value=0.00016 Score=62.79 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=29.1
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccc
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG 244 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 244 (438)
.++-|+|.||||+||+|.|+.|++.++ +..++..+++.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g---------~~hIstGdllR 65 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH---------FNHLSSGDLLR 65 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC---------CEEECHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC---------CceEcHHHHHH
Confidence 455678899999999999999999874 34555555543
No 234
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.63 E-value=0.00021 Score=63.45 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=22.2
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
+..-++++||||+|||+++..++..+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445688999999999999988876553
No 235
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.63 E-value=0.00066 Score=68.79 Aligned_cols=48 Identities=19% Similarity=0.182 Sum_probs=35.9
Q ss_pred HhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHH
Q 013706 161 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRL 222 (438)
Q Consensus 161 l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~ 222 (438)
...++|.+...++|.+.+... .....-++++||+|+|||++|+.+++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~--------------~~~~~~v~I~G~~GiGKTtLa~~~~~~ 170 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKL--------------KGEPGWVTIHGMAGCGKSVLAAEAVRD 170 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTS--------------TTSCEEEEEECCTTSSHHHHHHHHHCC
T ss_pred CCeecccHHHHHHHHHHHhcc--------------cCCCceEEEEcCCCCCHHHHHHHHHhc
Confidence 356899998888888764311 123456889999999999999999753
No 236
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.60 E-value=9.2e-05 Score=69.57 Aligned_cols=75 Identities=20% Similarity=0.241 Sum_probs=44.9
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccc----ccccc-----------chHHHHHHH----
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG----EFVGH-----------TGPKTRRRI---- 258 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~----~~~g~-----------~~~~~~~~~---- 258 (438)
+..-++++||||+|||++|..++..+...+ ..++.++...... ..+|. +...+..++
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g----~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~ 135 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAG----GIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLV 135 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC----CeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHH
Confidence 445588999999999999999987765432 2444444332111 11121 111111222
Q ss_pred HHccCcEEEEeCcccccC
Q 013706 259 KEAEGGILFVDEAYRLIP 276 (438)
Q Consensus 259 ~~a~~~il~iDEid~l~~ 276 (438)
......+|+||++..+.+
T Consensus 136 ~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 136 RSGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTTCCSEEEEECGGGCCC
T ss_pred hcCCCCEEEEcChHhhcc
Confidence 223468999999999985
No 237
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.60 E-value=0.0026 Score=61.19 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=25.5
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 227 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~ 227 (438)
+|.-+++.||||+||||++..+|..+...+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G 128 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRG 128 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCC
Confidence 356688999999999999999999886544
No 238
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.58 E-value=7.8e-05 Score=70.59 Aligned_cols=64 Identities=16% Similarity=0.035 Sum_probs=40.7
Q ss_pred CCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccc-cccccccchHHHHHHHHHccCcEEEEeCcccc
Q 013706 196 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDL-VGEFVGHTGPKTRRRIKEAEGGILFVDEAYRL 274 (438)
Q Consensus 196 ~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~a~~~il~iDEid~l 274 (438)
..++..++|+||||+||||++++++..+.. .++.+..+.- ...++|. + .+..++|+||++.+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g-------~~~~~~~~~~~~~~~lg~-------~---~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGG-------KALNVNLPLDRLNFELGV-------A---IDQFLVVFEDVKGT 228 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCC-------EEECCSSCTTTHHHHHGG-------G---TTCSCEEETTCCCS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCC-------cEEEEeccchhHHHHHHH-------h---cchhHHHHHHHHHH
Confidence 445668999999999999999999986532 3332222110 0111111 1 23467899999998
Q ss_pred cC
Q 013706 275 IP 276 (438)
Q Consensus 275 ~~ 276 (438)
..
T Consensus 229 ~~ 230 (377)
T 1svm_A 229 GG 230 (377)
T ss_dssp TT
T ss_pred HH
Confidence 76
No 239
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.58 E-value=0.00013 Score=68.64 Aligned_cols=75 Identities=16% Similarity=0.191 Sum_probs=46.3
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccc----ccccc-----------chHHHHH----HH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG----EFVGH-----------TGPKTRR----RI 258 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~----~~~g~-----------~~~~~~~----~~ 258 (438)
+...++++||||+|||++|..++..+...+ .+++.++...... ..+|. +...+.. +.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g----~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~ 137 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREG----KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 137 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC----CeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHH
Confidence 445689999999999999999998775433 2455555432111 11111 1122222 23
Q ss_pred HHccCcEEEEeCcccccC
Q 013706 259 KEAEGGILFVDEAYRLIP 276 (438)
Q Consensus 259 ~~a~~~il~iDEid~l~~ 276 (438)
+.....+|+||.+..+.+
T Consensus 138 ~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 138 RSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHTCCSEEEEECGGGCCC
T ss_pred hccCCCEEEEcCHHHhcc
Confidence 334568999999999985
No 240
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.57 E-value=0.00037 Score=65.29 Aligned_cols=75 Identities=17% Similarity=0.238 Sum_probs=45.6
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc----ccc-----------cchH----HHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE----FVG-----------HTGP----KTRRRI 258 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~----~~g-----------~~~~----~~~~~~ 258 (438)
+..-++++||||+|||+++..++..+...+ ..++.++....... -+| .+.. .+..++
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~g----g~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~ 135 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMG----GVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELV 135 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcC----CeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHh
Confidence 344578999999999999999998775432 24445554432110 011 1111 122222
Q ss_pred HHccCcEEEEeCcccccC
Q 013706 259 KEAEGGILFVDEAYRLIP 276 (438)
Q Consensus 259 ~~a~~~il~iDEid~l~~ 276 (438)
......+++||.+..+.+
T Consensus 136 ~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 136 RSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HTSCCSEEEEECTTTCCC
T ss_pred hhcCCCeEEehHhhhhcC
Confidence 334568999999998886
No 241
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.54 E-value=3.5e-05 Score=65.00 Aligned_cols=27 Identities=22% Similarity=0.311 Sum_probs=23.6
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
+..++|.||||+||||+|+.+++.+..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~ 29 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPE 29 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 346899999999999999999997754
No 242
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.53 E-value=0.00051 Score=58.40 Aligned_cols=27 Identities=33% Similarity=0.551 Sum_probs=23.4
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYMVG 227 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~~~ 227 (438)
.+.|.||+|+||||+.+.++..+...|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 478999999999999999999886444
No 243
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.51 E-value=0.00012 Score=63.79 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=21.2
Q ss_pred CCCceEEecCCCCCHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGR 221 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~ 221 (438)
+..-++++||||+|||++++.++.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445688999999999999999997
No 244
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.51 E-value=0.00018 Score=63.79 Aligned_cols=24 Identities=29% Similarity=0.180 Sum_probs=20.5
Q ss_pred CceEEecCCCCCHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l 223 (438)
.++++.||+|+|||.+|..++..+
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 359999999999999998887654
No 245
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.49 E-value=5e-05 Score=64.46 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=24.4
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
++.++|.||||+|||++|+.+++.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~ 31 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKR 31 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 567999999999999999999998854
No 246
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.44 E-value=7e-05 Score=64.47 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=25.1
Q ss_pred CCCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 197 RRPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 197 ~~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.+...++|.||||+||||+++.+++.++.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~ 51 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNV 51 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 35668999999999999999999998854
No 247
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.43 E-value=0.00012 Score=68.18 Aligned_cols=28 Identities=25% Similarity=0.496 Sum_probs=25.0
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
...+++|.||||+|||++++++|+.+..
T Consensus 23 ~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 23 YRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3457999999999999999999999876
No 248
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.42 E-value=9.2e-05 Score=63.97 Aligned_cols=34 Identities=29% Similarity=0.507 Sum_probs=27.2
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccc
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV 243 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 243 (438)
.++|.||||+||+|.|+.|++.++ +..++..+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g---------~~~istGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG---------FVHISTGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC---------CEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC---------CeEEcHHHHH
Confidence 478999999999999999999874 3456655554
No 249
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.42 E-value=0.00029 Score=62.48 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.7
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRL 222 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~ 222 (438)
+..-++|+||||+|||++++.++..
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4456889999999999999999874
No 250
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.40 E-value=0.00047 Score=69.16 Aligned_cols=44 Identities=16% Similarity=0.033 Sum_probs=32.9
Q ss_pred cChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHH
Q 013706 165 VGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGR 221 (438)
Q Consensus 165 ~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~ 221 (438)
+|.+..+++|.+++..- .......+.++|++|+|||++|+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~-------------~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM-------------CDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHH-------------TTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc-------------cCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 58888888887764311 011345678999999999999999996
No 251
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.38 E-value=0.00062 Score=76.58 Aligned_cols=108 Identities=13% Similarity=0.195 Sum_probs=64.7
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccc----ccc--------c---hHH----HHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF----VGH--------T---GPK----TRRRI 258 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~----~g~--------~---~~~----~~~~~ 258 (438)
+..-++|+|+||+|||++|..+|..+... ..+++.++......++ +|- . ... ++.+.
T Consensus 731 ~G~lilIaG~PG~GKTtLalqlA~~~a~~----g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~ 806 (2050)
T 3cmu_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 806 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT----TCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc----CCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHh
Confidence 55668999999999999999999887642 2356667665544332 231 1 112 22223
Q ss_pred HHccCcEEEEeCcccccC-C----CCCCCc-hhHHHHHHHHHhhc----cCCCEEEEEecC
Q 013706 259 KEAEGGILFVDEAYRLIP-M----QKADDK-DYGIEALEEIMSVM----DGGKVVVIFAGY 309 (438)
Q Consensus 259 ~~a~~~il~iDEid~l~~-~----~~~~~~-~~~~~~~~~ll~~~----~~~~v~vi~~~~ 309 (438)
.+...++||||.+..+.+ . +.++.+ +...+.++++++.| ...++.||+.+.
T Consensus 807 ~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke~~v~VI~l~Q 867 (2050)
T 3cmu_A 807 RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQ 867 (2050)
T ss_dssp HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred hccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCEEEEecc
Confidence 335569999999999986 2 111111 22233344444444 446777777663
No 252
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.35 E-value=0.00085 Score=68.00 Aligned_cols=27 Identities=33% Similarity=0.329 Sum_probs=22.9
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
...+++.||||||||+++..+...+..
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~~ 190 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALIQ 190 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 457999999999999999888877753
No 253
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.34 E-value=0.00038 Score=61.92 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.0
Q ss_pred CCCceEEecCCCCCHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGR 221 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~ 221 (438)
+..-+.|.||+|+||||+++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 455688999999999999999984
No 254
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.32 E-value=0.00023 Score=62.51 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=21.8
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l 223 (438)
+..-+.|.||+|+|||++++.++..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34457899999999999999998744
No 255
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.29 E-value=0.001 Score=60.35 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=22.9
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
...-++|+||||+|||++++.++..+.
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 345688999999999999999998664
No 256
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.29 E-value=0.00026 Score=64.62 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=23.0
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l 223 (438)
.+..++|.||||+||||+|+.+++.+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45668899999999999999999866
No 257
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.29 E-value=0.00012 Score=61.56 Aligned_cols=26 Identities=35% Similarity=0.618 Sum_probs=23.3
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
+.++|.||||+|||++|+.||+.++.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~ 30 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDL 30 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 36899999999999999999998854
No 258
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.29 E-value=0.00013 Score=60.81 Aligned_cols=28 Identities=32% Similarity=0.545 Sum_probs=24.2
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
+..+++|.|+||+||||+|+.|++.++.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg~ 33 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALKL 33 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4568999999999999999999998865
No 259
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.28 E-value=0.00012 Score=62.16 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=22.8
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRL 222 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~ 222 (438)
.+..++|.|+||+|||++++.+++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999999997
No 260
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.28 E-value=0.00013 Score=61.67 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=24.5
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.+..++|.|+||+|||++++.+++.++.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~ 37 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGL 37 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCC
Confidence 4567999999999999999999998753
No 261
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.28 E-value=0.00014 Score=61.56 Aligned_cols=26 Identities=35% Similarity=0.704 Sum_probs=23.4
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
+.++|.|+||+|||++|+.|++.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~ 28 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGV 28 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 45899999999999999999998864
No 262
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.26 E-value=0.00015 Score=60.48 Aligned_cols=25 Identities=24% Similarity=0.129 Sum_probs=22.6
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.++|.||||+||||+++.|++.++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~ 27 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKY 27 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5789999999999999999998754
No 263
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.26 E-value=0.00018 Score=61.91 Aligned_cols=29 Identities=31% Similarity=0.380 Sum_probs=24.9
Q ss_pred CCCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 197 RRPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 197 ~~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
..+..|+|.|+||+||||+|+.|++.++.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~ 46 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGI 46 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34557899999999999999999998754
No 264
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.25 E-value=0.00095 Score=60.77 Aligned_cols=105 Identities=19% Similarity=0.291 Sum_probs=54.4
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc-ccccchHHHHHHHHHccCcEEEEeCcccccCC
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPM 277 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~ 277 (438)
++-+++.||+|+|||++|..+|+.+.. .++..+...+... .+|.. +.... +...-.=-|||..+ +.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~-------~iis~Ds~qvY~~~~igTa-kp~~~--E~~~v~hhlid~~~---~~ 76 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPV-------ELISVDSALIYKGMDIGTA-KPNAE--ELLAAPHRLLDIRD---PS 76 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCE-------EEEECCTTTTBTTCCTTTT-CCCHH--HHHHSCEETSSCBC---TT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCC-------cEEecccccccccccccCC-CCCHH--HHcCCCEEEeccCC---cc
Confidence 445789999999999999999997643 4554444332211 12211 11111 11111234555443 11
Q ss_pred CCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHH
Q 013706 278 QKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRV 316 (438)
Q Consensus 278 ~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~ 316 (438)
..-+..++...+...+-.....+++.+++.++.=-+..+
T Consensus 77 e~~s~~~f~~~a~~~i~~i~~~g~~pilVGGTglYi~al 115 (316)
T 3foz_A 77 QAYSAADFRRDALAEMADITAAGRIPLLVGGTMLYFKAL 115 (316)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHH
Confidence 111123444555555555556677776666654444444
No 265
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.23 E-value=0.00069 Score=67.02 Aligned_cols=76 Identities=13% Similarity=0.101 Sum_probs=50.7
Q ss_pred cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHH
Q 013706 264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAK 343 (438)
Q Consensus 264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~ 343 (438)
-+|+|||++.+..... ......+..+.+.-..-.+.+|++|.+...+.+ +..++.-|+.+|.|...+..+...
T Consensus 345 ivvVIDE~~~L~~~~~----~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I---~~~Iran~~~RI~lrv~s~~Dsr~ 417 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG----KKVEELIARIAQKARAAGIHLILATQRPSVDVI---TGLIKANIPTRIAFQVSSKIDSRT 417 (574)
T ss_dssp EEEEESCCTTHHHHTC----HHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTS---CHHHHHTCCEEEEECCSCHHHHHH
T ss_pred EEEEEeCHHHHhhhhh----HHHHHHHHHHHHHHhhCCeEEEEEecCcccccc---cHHHHhhhccEEEEEcCCHHHHHH
Confidence 4899999998875321 222344455555555566888888765443322 455666788888999999988888
Q ss_pred HHH
Q 013706 344 ILH 346 (438)
Q Consensus 344 il~ 346 (438)
|+.
T Consensus 418 ILd 420 (574)
T 2iut_A 418 ILD 420 (574)
T ss_dssp HHS
T ss_pred hcC
Confidence 874
No 266
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.20 E-value=0.00052 Score=63.87 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=22.3
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l 223 (438)
+..-++++||||+|||++|..++...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 44568899999999999999998754
No 267
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.20 E-value=0.00022 Score=60.76 Aligned_cols=28 Identities=32% Similarity=0.535 Sum_probs=24.1
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.+..++|.|+||+||||+++.+++.++.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~ 31 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRL 31 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3456889999999999999999998753
No 268
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.19 E-value=0.00079 Score=74.80 Aligned_cols=77 Identities=16% Similarity=0.182 Sum_probs=49.2
Q ss_pred CCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccc----cccccc-----------chHHH----HH
Q 013706 196 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLV----GEFVGH-----------TGPKT----RR 256 (438)
Q Consensus 196 ~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~----~~~~g~-----------~~~~~----~~ 256 (438)
..+...++|+||||+|||++|..+|..+...+ .+++.++..... .+..|- +...+ +.
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g----~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~ 804 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREG----KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDA 804 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTT----CCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcC----CCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHH
Confidence 34566799999999999999999998876533 245555544322 122221 11122 22
Q ss_pred HHHHccCcEEEEeCcccccC
Q 013706 257 RIKEAEGGILFVDEAYRLIP 276 (438)
Q Consensus 257 ~~~~a~~~il~iDEid~l~~ 276 (438)
+..+....+|+||.+..+.+
T Consensus 805 lv~~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 805 LARSGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HHHHTCCSEEEESCSTTCCC
T ss_pred HHHccCCCEEEEechhhhcc
Confidence 23344569999999999985
No 269
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.17 E-value=0.001 Score=60.67 Aligned_cols=105 Identities=17% Similarity=0.174 Sum_probs=55.4
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc-ccccchHHHHHHHHHccCcEEEEeCcccccCCC
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTGPKTRRRIKEAEGGILFVDEAYRLIPMQ 278 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~a~~~il~iDEid~l~~~~ 278 (438)
+-+++.||+|+|||++|..+|+.+.. .++..+...+... .+|...... . +...-.=-|||..+ +..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~-------~iis~Ds~QvYr~~~igTakp~~-~--E~~gvphhlid~~~---~~e 70 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNG-------EVISGDSMQVYRGMDIGTAKITA-E--EMDGVPHHLIDIKD---PSE 70 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTE-------EEEECCGGGGBTTCCTTTTCCCH-H--HHTTCCEESSSCBC---TTS
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCcc-------ceeecCcccceeeeeecCCCCCH-H--HHcCCCEEEeccCC---hhh
Confidence 35789999999999999999986642 4444433322211 122211111 1 22222345666543 111
Q ss_pred CCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHh
Q 013706 279 KADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVI 317 (438)
Q Consensus 279 ~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~ 317 (438)
.-+...+...+...+-.....+++.+++.+|.=-+..++
T Consensus 71 ~~s~~~F~~~a~~~i~~i~~~gk~pIlVGGTglYi~aLl 109 (322)
T 3exa_A 71 SFSVADFQDLATPLITEIHERGRLPFLVGGTGLYVNAVI 109 (322)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCEEEEESCCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHHHHHHHH
Confidence 111234555555555555666887777766554444443
No 270
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.15 E-value=0.00024 Score=62.12 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=24.6
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
++..++|.|+||+||||+|+.|++.++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~ 30 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHA 30 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4567999999999999999999998753
No 271
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.14 E-value=0.00028 Score=60.09 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=23.0
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.++|.||||+||||+++.|++.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5789999999999999999998874
No 272
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.14 E-value=0.0024 Score=54.08 Aligned_cols=30 Identities=20% Similarity=0.045 Sum_probs=25.1
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGI 228 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~ 228 (438)
...+++|+++|.|||++|-.+|-.....|.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~ 57 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGK 57 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 457899999999999999999887755554
No 273
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.14 E-value=0.00042 Score=59.14 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=22.6
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l 223 (438)
.+.-++|.||+|+|||++++.|....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45668899999999999999998764
No 274
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.14 E-value=0.00032 Score=59.33 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=20.8
Q ss_pred ceEEecCCCCCHH-HHHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKT-MVARILGRLLYM 225 (438)
Q Consensus 201 ~~ll~GppGtGKT-~la~~la~~l~~ 225 (438)
-.++|||.|+||| .|.+++.+....
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~ 47 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIA 47 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 4668999999999 899998887653
No 275
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.12 E-value=0.00024 Score=59.42 Aligned_cols=25 Identities=28% Similarity=0.519 Sum_probs=22.6
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
..+.|.||||+||||+++.++..++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999764
No 276
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.10 E-value=0.00031 Score=59.68 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=23.7
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
..++|.||||+||||+++.|++.++.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999998874
No 277
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.10 E-value=0.00049 Score=65.06 Aligned_cols=99 Identities=14% Similarity=0.210 Sum_probs=52.2
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeeccccccc-ccccchHHHHHHHHHccC-cEEEEeCcccccCC
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGE-FVGHTGPKTRRRIKEAEG-GILFVDEAYRLIPM 277 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~a~~-~il~iDEid~l~~~ 277 (438)
+-+++.||+|+|||++|..+|+.+.. .++..+...+... .+|.. +.. .++-.+ .=-|||..+ +.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~-------~iis~Ds~QvYr~l~i~T~-kp~---~~E~~gv~hhlid~~~---~~ 68 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNG-------EVINSDSMQVYKDIPIITN-KHP---LQEREGIPHHVMNHVD---WS 68 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTE-------EEEECCTTTTBSSCTTTTT-CCC---GGGTTTCCEESCSCBC---TT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCC-------eEeecCccceecccccccC-CCC---HHHHcCchhhcCCccC---hH
Confidence 45789999999999999999998753 3444333212111 11110 000 011111 345666654 11
Q ss_pred CCCCCchhHHHHHHHHHhhccCCCEEEEEecCChh
Q 013706 278 QKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEP 312 (438)
Q Consensus 278 ~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~ 312 (438)
..-+...+...+...+-.....+++.|+..++.--
T Consensus 69 ~~~s~~~F~~~a~~~i~~i~~~g~~pilVGGTglY 103 (409)
T 3eph_A 69 EEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYY 103 (409)
T ss_dssp SCCCHHHHHHHHHHHHHHHHTTTCEEEEECSCGGG
T ss_pred hHhhHHHHHHHHHHHHHHHHhcCCCEEEECChHHH
Confidence 11122445555655555556667777766655433
No 278
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.09 E-value=0.00024 Score=60.69 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=24.3
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.+..++|.|+||+||||+|+.+++.++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~ 35 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGY 35 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3567899999999999999999998753
No 279
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.09 E-value=0.00026 Score=59.11 Aligned_cols=26 Identities=35% Similarity=0.441 Sum_probs=23.3
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
..++|.|+||+|||++|+.+++.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~ 28 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGY 28 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46899999999999999999998754
No 280
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.09 E-value=0.0012 Score=63.11 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=20.3
Q ss_pred CCCceEEecCCCCCHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGR 221 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~ 221 (438)
+..-++|+||||+|||+|++.++-
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHH
Confidence 445688999999999999998764
No 281
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.08 E-value=0.00032 Score=60.34 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=23.9
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
+..++|.||||+||||+|+.|++.++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~ 44 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGY 44 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457899999999999999999998743
No 282
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.07 E-value=0.0075 Score=66.48 Aligned_cols=152 Identities=13% Similarity=0.198 Sum_probs=82.2
Q ss_pred HhhhcChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHHHHHH-cCCcCCCC-EEEee
Q 013706 161 LSNIVGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGRLLYM-VGILPTDR-VTEVQ 238 (438)
Q Consensus 161 l~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~~l~~-~~~~~~~~-~~~~~ 238 (438)
...++|.+...++|.+.+... ...+.-+.++|++|+|||+||+.+++.... ........ ++.+.
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~--------------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~ 188 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKL--------------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIG 188 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTT--------------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECC
T ss_pred CceeccHHHHHHHHHHHHhhc--------------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEEC
Confidence 356899998888888764211 123455789999999999999988765322 11111111 33333
Q ss_pred ccc---cc-------ccc---------cccchHHHHHHHHH-----ccCcEEEEeCcccccCCCCCCCchhHHHHHHHHH
Q 013706 239 RTD---LV-------GEF---------VGHTGPKTRRRIKE-----AEGGILFVDEAYRLIPMQKADDKDYGIEALEEIM 294 (438)
Q Consensus 239 ~~~---~~-------~~~---------~g~~~~~~~~~~~~-----a~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll 294 (438)
... .. ... .......+...+.. .+..+|+||+++.. . .+
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~----------------~-~~ 251 (1249)
T 3sfz_A 189 KQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP----------------W-VL 251 (1249)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH----------------H-HH
T ss_pred CcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH----------------H-HH
Confidence 211 00 000 01112223333332 23689999999743 1 22
Q ss_pred hhccCCCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCC-CCHHHHHHHHHHHHhc
Q 013706 295 SVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFND-FNSEELAKILHIKMNN 351 (438)
Q Consensus 295 ~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~-~~~~e~~~il~~~l~~ 351 (438)
..+..+ ..||.||...... .. .......+.+++ ++.+|-.+++..+...
T Consensus 252 ~~~~~~-~~ilvTtR~~~~~------~~-~~~~~~~~~~~~~l~~~~a~~l~~~~~~~ 301 (1249)
T 3sfz_A 252 KAFDNQ-CQILLTTRDKSVT------DS-VMGPKHVVPVESGLGREKGLEILSLFVNM 301 (1249)
T ss_dssp TTTCSS-CEEEEEESSTTTT------TT-CCSCBCCEECCSSCCHHHHHHHHHHHHTS
T ss_pred HhhcCC-CEEEEEcCCHHHH------Hh-hcCCceEEEecCCCCHHHHHHHHHHhhCC
Confidence 223333 3555555443321 00 112235677775 9999999999877643
No 283
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.07 E-value=0.00024 Score=63.16 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=24.2
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
++..++|.||||+||||+|+.|++.++
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 566799999999999999999998774
No 284
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.07 E-value=0.00046 Score=62.02 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=24.7
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVG 227 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~ 227 (438)
+..++|.|+||+|||++|+.+++.+...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g 32 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNN 32 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCC
Confidence 45689999999999999999999876443
No 285
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.07 E-value=0.002 Score=54.71 Aligned_cols=73 Identities=15% Similarity=0.051 Sum_probs=41.3
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecc-------cccccccccc-----hHHHHHHHHHcc--CcE
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT-------DLVGEFVGHT-----GPKTRRRIKEAE--GGI 265 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~-------~~~~~~~g~~-----~~~~~~~~~~a~--~~i 265 (438)
.-.+++||+|+|||+.+-.++..+...+. .++.+.+. ..+.+..|.. .....++++... .-+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~----kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~~~dv 84 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQ----KIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEEDTEV 84 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTC----CEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCTTCSE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCC----EEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhccCCE
Confidence 34678999999999988888887754332 22222111 0111111210 011125566554 369
Q ss_pred EEEeCcccccC
Q 013706 266 LFVDEAYRLIP 276 (438)
Q Consensus 266 l~iDEid~l~~ 276 (438)
|+|||+..+.+
T Consensus 85 ViIDEaqfl~~ 95 (191)
T 1xx6_A 85 IAIDEVQFFDD 95 (191)
T ss_dssp EEECSGGGSCT
T ss_pred EEEECCCCCCH
Confidence 99999988753
No 286
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.06 E-value=0.00036 Score=61.60 Aligned_cols=28 Identities=29% Similarity=0.466 Sum_probs=24.7
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.+..++|.|+||+|||++|+.|++.++.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~ 42 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCV 42 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567999999999999999999998753
No 287
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.05 E-value=0.00022 Score=62.23 Aligned_cols=27 Identities=19% Similarity=0.460 Sum_probs=23.9
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
+..++|.|+||+||||+|+.|++.++.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~ 31 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGL 31 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCc
Confidence 457899999999999999999998753
No 288
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.03 E-value=0.00039 Score=60.82 Aligned_cols=28 Identities=18% Similarity=0.383 Sum_probs=24.7
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.+..++|.||||+||||+++.|++.++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4567999999999999999999998753
No 289
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.03 E-value=0.00029 Score=59.28 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=20.2
Q ss_pred CceEEecCCCCCHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGR 221 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~ 221 (438)
..++|.||||+||||+|+.+++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3588999999999999999998
No 290
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.02 E-value=0.00066 Score=62.71 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.8
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
++.++|.||+|+|||+||..||+.++
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 34688999999999999999999764
No 291
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.02 E-value=0.00025 Score=60.52 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=23.0
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
+..++|.|+||+||||+|+.+++.++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45688999999999999999999774
No 292
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.02 E-value=0.00086 Score=59.96 Aligned_cols=28 Identities=29% Similarity=0.501 Sum_probs=24.3
Q ss_pred CCCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 197 RRPPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 197 ~~~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
..+..++|.||||+||||+|+.+++.+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3456789999999999999999999764
No 293
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.01 E-value=0.00024 Score=60.00 Aligned_cols=27 Identities=33% Similarity=0.283 Sum_probs=19.8
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
+..++|.|+||+||||+|+.+++.++.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~ 31 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPG 31 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 457899999999999999999987754
No 294
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.01 E-value=0.0012 Score=62.04 Aligned_cols=96 Identities=15% Similarity=0.194 Sum_probs=53.3
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee-cccc--------c-ccccccchHHHHHHHHHc---cCcE
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ-RTDL--------V-GEFVGHTGPKTRRRIKEA---EGGI 265 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~-~~~~--------~-~~~~g~~~~~~~~~~~~a---~~~i 265 (438)
...+++.||+|+||||+.++++..+.... .+.++.+. +.++ + ...++.........+..+ .+-+
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~---~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdv 199 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTK---YHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDI 199 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHC---CCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCC---CcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCE
Confidence 34688999999999999999999886431 01111111 1111 1 111222112233344443 6799
Q ss_pred EEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCCh
Q 013706 266 LFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSE 311 (438)
Q Consensus 266 l~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~ 311 (438)
|++||+-. .++...+++....+.. +++++...
T Consensus 200 illDEp~d-------------~e~~~~~~~~~~~G~~-vl~t~H~~ 231 (356)
T 3jvv_A 200 ILVGEMRD-------------LETIRLALTAAETGHL-VFGTLHTT 231 (356)
T ss_dssp EEESCCCS-------------HHHHHHHHHHHHTTCE-EEEEESCS
T ss_pred EecCCCCC-------------HHHHHHHHHHHhcCCE-EEEEEccC
Confidence 99999841 2444556666666665 45554433
No 295
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.01 E-value=0.0012 Score=61.98 Aligned_cols=26 Identities=23% Similarity=0.149 Sum_probs=21.7
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l 223 (438)
+..-++++||||+|||++|..++...
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34457899999999999999998753
No 296
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.00 E-value=0.00053 Score=59.44 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=26.7
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI 228 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~ 228 (438)
.+..|+|.|+||+||||+++.+++.+...++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~ 38 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGH 38 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 4567899999999999999999999876543
No 297
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.00 E-value=0.00036 Score=57.96 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.6
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.++|.|+||+|||++|+.+++.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~ 26 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNI 26 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5889999999999999999998754
No 298
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.00 E-value=0.00061 Score=57.63 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=20.9
Q ss_pred CceEEecCCCCCHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l 223 (438)
+.++|.||+|+|||+|++.+.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999987754
No 299
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.98 E-value=0.00034 Score=59.85 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=23.4
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
+..++|.|+||+||||+|+.+++.++
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999999875
No 300
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.98 E-value=0.00066 Score=58.74 Aligned_cols=31 Identities=19% Similarity=0.308 Sum_probs=26.6
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI 228 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~ 228 (438)
.+..++|.|+||+||||+++.+++.++..++
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~ 39 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNV 39 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 3567899999999999999999999886543
No 301
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.96 E-value=0.00025 Score=60.42 Aligned_cols=25 Identities=32% Similarity=0.586 Sum_probs=21.7
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRL 222 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~ 222 (438)
.+..+.|.||||+||||+++.|+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4456889999999999999999874
No 302
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.96 E-value=0.00032 Score=59.38 Aligned_cols=25 Identities=40% Similarity=0.546 Sum_probs=22.5
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
..++|.||||+||||+++.+++.++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999998774
No 303
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.96 E-value=0.00028 Score=62.00 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=23.4
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
.+..++|.||||+||||+|+.|++.++
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456799999999999999999998764
No 304
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.95 E-value=0.00038 Score=60.56 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.2
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.++|.||||+||||+|+.+++.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999987743
No 305
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.95 E-value=0.00038 Score=59.18 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=23.1
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
+..++|.|+||+||||+|+.+++.++
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45688999999999999999999774
No 306
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.94 E-value=0.0037 Score=56.02 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=23.9
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
+...+++.||+|+||||+.++++..+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 3446889999999999999999998754
No 307
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.93 E-value=0.00051 Score=57.55 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=22.6
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
+..++|.||||+||||+++.++..++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 44688999999999999999998763
No 308
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.93 E-value=0.00032 Score=61.07 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.5
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~ 224 (438)
.++|.||||+||||+|+.|++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998764
No 309
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.93 E-value=0.00093 Score=56.57 Aligned_cols=30 Identities=37% Similarity=0.477 Sum_probs=25.5
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 227 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~ 227 (438)
.+..++|.|+||+||||+++.++..+...+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~ 41 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEG 41 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 445688999999999999999999987533
No 310
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.91 E-value=0.0011 Score=64.99 Aligned_cols=76 Identities=12% Similarity=0.103 Sum_probs=47.1
Q ss_pred EEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCChhHHHHhhhCcCccCCCCcceeCCCCCHHHHHHH
Q 013706 265 ILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYSEPMKRVIASNEGFCRRVTKFFHFNDFNSEELAKI 344 (438)
Q Consensus 265 il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~~~~~~~~~~~p~l~~R~~~~i~~~~~~~~e~~~i 344 (438)
+|+|||+..+.... .....+.+..|.+.-..-.+.+|++|.....+.+ +..++.-|+.+|.|...+..+...|
T Consensus 300 vlvIDE~~~ll~~~----~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl---~~~i~~n~~~RI~lrv~s~~dsr~i 372 (512)
T 2ius_A 300 VVLVDEFADLMMTV----GKKVEELIARLAQKARAAGIHLVLATQRPSVDVI---TGLIKANIPTRIAFTVSSKIDSRTI 372 (512)
T ss_dssp EEEEETHHHHHHHH----HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTS---CHHHHHHCCEEEEECCSSHHHHHHH
T ss_pred EEEEeCHHHHHhhh----hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccc---cHHHHhhcCCeEEEEcCCHHHHHHh
Confidence 89999998876411 1112233444444444445777777665442222 4445667778888988899998888
Q ss_pred HHH
Q 013706 345 LHI 347 (438)
Q Consensus 345 l~~ 347 (438)
+..
T Consensus 373 lg~ 375 (512)
T 2ius_A 373 LDQ 375 (512)
T ss_dssp HSS
T ss_pred cCC
Confidence 753
No 311
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.91 E-value=0.00034 Score=58.46 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=19.9
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~ 224 (438)
.++|.||||+||||+|+.+ +.++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTT
T ss_pred EEEEECCCCCCHHHHHHHH-HHCC
Confidence 5789999999999999999 5543
No 312
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.90 E-value=0.00066 Score=58.29 Aligned_cols=30 Identities=30% Similarity=0.469 Sum_probs=25.3
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 227 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~ 227 (438)
++..+.|.||+|+||||+++.++..+...|
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G 53 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKG 53 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 455688999999999999999999886533
No 313
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.88 E-value=0.00064 Score=58.40 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=23.3
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l 223 (438)
++..+.|.||||+||||+++.|+..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45678899999999999999999877
No 314
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.87 E-value=0.00042 Score=59.62 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.2
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
.+..|+|.|+||+||||+++.+++.++
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 455688999999999999999998754
No 315
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.85 E-value=0.00058 Score=59.06 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=23.5
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
..|+|.|+||+||||+|+.|++.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 46889999999999999999998865
No 316
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.83 E-value=0.0072 Score=55.11 Aligned_cols=107 Identities=8% Similarity=0.032 Sum_probs=55.9
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccc----ccccc-----------chHHH-HHHH------
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVG----EFVGH-----------TGPKT-RRRI------ 258 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~----~~~g~-----------~~~~~-~~~~------ 258 (438)
-++++||||+|||+++-.++..+...+ ....++.++...-.. +-+|- +...+ -.+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g--~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i 107 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY--PDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAI 107 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC--TTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC--CCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHh
Confidence 578999999999999888877664321 012445555543211 11111 11122 1222
Q ss_pred HHccCcEEEEeCcccccCCCC--CCCch------hHHHHHHH----HHhhccCCCEEEEEecC
Q 013706 259 KEAEGGILFVDEAYRLIPMQK--ADDKD------YGIEALEE----IMSVMDGGKVVVIFAGY 309 (438)
Q Consensus 259 ~~a~~~il~iDEid~l~~~~~--~~~~~------~~~~~~~~----ll~~~~~~~v~vi~~~~ 309 (438)
++....+|+||=+..+.+... +...+ ...+.+++ |.......++.+|+++.
T Consensus 108 ~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQ 170 (333)
T 3io5_A 108 ERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINH 170 (333)
T ss_dssp CTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred hccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECC
Confidence 222458999999999986322 11110 11233333 33445556777777664
No 317
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.82 E-value=0.001 Score=64.89 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=23.5
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
+..-+++.|+||+|||+++..++..+..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4445889999999999999999987653
No 318
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.78 E-value=0.00074 Score=58.67 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=22.0
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~ 224 (438)
.++|.||||+||||+|+.|++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999774
No 319
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.77 E-value=0.00068 Score=58.42 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=23.2
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l 223 (438)
.+..++|.||||+||||+++.|++.+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45678999999999999999999865
No 320
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.77 E-value=0.0074 Score=53.11 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=17.7
Q ss_pred CCceEEecCCCCCHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILG 220 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la 220 (438)
...+++.||+|+|||++...+.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHH
Confidence 3579999999999998666553
No 321
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.75 E-value=0.0015 Score=55.56 Aligned_cols=27 Identities=41% Similarity=0.468 Sum_probs=23.3
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYMVG 227 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~~~ 227 (438)
.+.|.|+||+||||+++.+++.+...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g 28 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKG 28 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 478999999999999999999885433
No 322
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.73 E-value=0.0016 Score=54.75 Aligned_cols=37 Identities=27% Similarity=0.286 Sum_probs=28.0
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeec
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQR 239 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 239 (438)
+..+.|.|++|+||||+++.++..+...++ +++.++.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~----~~i~~d~ 41 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGI----PCYTLDG 41 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTC----CEEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCC----cEEEECC
Confidence 456889999999999999999998753232 5555553
No 323
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=96.70 E-value=0.0099 Score=62.87 Aligned_cols=42 Identities=26% Similarity=0.221 Sum_probs=32.7
Q ss_pred cChHHHHHHHHHHHHHhhhHHHHHhcCCCCCCCCCCceEEecCCCCCHHHHHHHHHH
Q 013706 165 VGLHELKIQLRKWAKGMLLDERRKALGLKVGARRPPHMAFLGNPGTGKTMVARILGR 221 (438)
Q Consensus 165 ~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~GppGtGKT~la~~la~ 221 (438)
+|.+...++|.+.+... ...+-+.++||+|+|||++|+.+++
T Consensus 131 VGRe~eLeeL~elL~~~---------------d~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL---------------RPAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC---------------CSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc---------------CCCeEEEEEcCCCccHHHHHHHHHH
Confidence 78888888887764311 1245688999999999999999985
No 324
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.69 E-value=0.0068 Score=55.98 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=23.2
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
+..-+++.|+||+|||++|..+|.....
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~ 94 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSD 94 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4455889999999999999999876643
No 325
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.68 E-value=0.001 Score=57.14 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=22.5
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.++|.|+||+||||+++.+++.++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 4789999999999999999998853
No 326
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.66 E-value=0.0017 Score=60.26 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=21.4
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRL 222 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~ 222 (438)
+..-++++||||+|||++|..++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3445789999999999999999875
No 327
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.66 E-value=0.001 Score=58.17 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=21.9
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~ 224 (438)
.++|.||||+||||+|+.+++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999874
No 328
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.63 E-value=0.0014 Score=55.91 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=23.0
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706 202 MAFLGNPGTGKTMVARILGRLLYMVG 227 (438)
Q Consensus 202 ~ll~GppGtGKT~la~~la~~l~~~~ 227 (438)
|.|.|+||+||||+++.+++.+...+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g 28 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRG 28 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 78999999999999999999885544
No 329
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.62 E-value=0.0013 Score=58.56 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=23.9
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
.+..+.|.||||+||||+++.|++.++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356789999999999999999998774
No 330
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.60 E-value=0.0036 Score=61.97 Aligned_cols=29 Identities=34% Similarity=0.678 Sum_probs=25.0
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVG 227 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~ 227 (438)
+.-|+|.|.||+|||++|+.+++.++..+
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 34578999999999999999999997644
No 331
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.60 E-value=0.0013 Score=57.68 Aligned_cols=28 Identities=39% Similarity=0.385 Sum_probs=23.9
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.+..+.|.||||+|||++++.|++.++.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~ 35 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGA 35 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3457889999999999999999998753
No 332
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.57 E-value=0.0031 Score=54.16 Aligned_cols=26 Identities=15% Similarity=-0.061 Sum_probs=20.7
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706 202 MAFLGNPGTGKTMVARILGRLLYMVG 227 (438)
Q Consensus 202 ~ll~GppGtGKT~la~~la~~l~~~~ 227 (438)
.+++||.|+|||+.+-.++..+...+
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g 56 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAK 56 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 45899999999998888887765443
No 333
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.57 E-value=0.022 Score=48.60 Aligned_cols=46 Identities=15% Similarity=0.447 Sum_probs=27.8
Q ss_pred cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-CCEEEEEecCChhHHHH
Q 013706 264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV 316 (438)
Q Consensus 264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~v~vi~~~~~~~~~~~ 316 (438)
.+|++||+|.+.... + ...+..++..+.. ..++++.||-++....+
T Consensus 148 ~~lViDEah~~~~~~------~-~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~ 194 (206)
T 1vec_A 148 QMIVLDEADKLLSQD------F-VQIMEDIILTLPKNRQILLYSATFPLSVQKF 194 (206)
T ss_dssp CEEEEETHHHHTSTT------T-HHHHHHHHHHSCTTCEEEEEESCCCHHHHHH
T ss_pred CEEEEEChHHhHhhC------c-HHHHHHHHHhCCccceEEEEEeeCCHHHHHH
Confidence 799999999987521 1 2445666666654 44555555555554433
No 334
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.56 E-value=0.001 Score=57.08 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=22.7
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l 223 (438)
+..++|.|+||+||||+++.+++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999976
No 335
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.53 E-value=0.0025 Score=55.55 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=22.6
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
..+-|.||||+||||+|+.|++.++.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~ 34 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGI 34 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCC
Confidence 45678999999999999999998754
No 336
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.53 E-value=0.0015 Score=57.14 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=22.6
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
..+.|.||||+||||+++.+++.++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999999775
No 337
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.52 E-value=0.0017 Score=54.68 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=21.9
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l 223 (438)
..-+.|.||+|+||||+++.++..+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3468899999999999999998865
No 338
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=96.52 E-value=0.0014 Score=56.58 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=20.6
Q ss_pred CceEEecCCCCCHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l 223 (438)
.++++.+|+|+|||.++-.++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999988777654
No 339
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.51 E-value=0.0024 Score=62.16 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=23.2
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
+..-+++.|+||+|||++|..+|.....
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4445789999999999999999887653
No 340
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.49 E-value=0.0017 Score=56.17 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=22.4
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l 223 (438)
++.-+.|.||+|+|||++++.|+..+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34568899999999999999999865
No 341
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.49 E-value=0.0016 Score=55.94 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=22.6
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l 223 (438)
++..+.|.||||+||||+++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45568899999999999999999865
No 342
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.48 E-value=0.0082 Score=55.75 Aligned_cols=25 Identities=20% Similarity=0.385 Sum_probs=22.1
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l 223 (438)
...+++.||+|+||||+.++++..+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998754
No 343
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.48 E-value=0.0017 Score=57.67 Aligned_cols=27 Identities=37% Similarity=0.511 Sum_probs=24.3
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
...+.|.||||+||||+++.++..++.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 457999999999999999999998864
No 344
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.46 E-value=0.026 Score=51.49 Aligned_cols=28 Identities=21% Similarity=0.413 Sum_probs=24.4
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.+..++|.||+|+||||++..+|..+..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4567889999999999999999998863
No 345
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.44 E-value=0.028 Score=48.90 Aligned_cols=46 Identities=17% Similarity=0.384 Sum_probs=28.4
Q ss_pred cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-CCEEEEEecCChhHHHH
Q 013706 264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV 316 (438)
Q Consensus 264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~v~vi~~~~~~~~~~~ 316 (438)
..|+|||+|.+.... + ...+..++..+.. .+++++.||-++....+
T Consensus 169 ~~lViDEah~~~~~~------~-~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~ 215 (228)
T 3iuy_A 169 TYLVIDEADKMLDME------F-EPQIRKILLDVRPDRQTVMTSATWPDTVRQL 215 (228)
T ss_dssp CEEEECCHHHHHHTT------C-HHHHHHHHHHSCSSCEEEEEESCCCHHHHHH
T ss_pred eEEEEECHHHHhccc------h-HHHHHHHHHhCCcCCeEEEEEeeCCHHHHHH
Confidence 789999999987532 1 1334555666654 44555566656666544
No 346
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.42 E-value=0.035 Score=48.07 Aligned_cols=46 Identities=20% Similarity=0.301 Sum_probs=26.9
Q ss_pred cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-CEEEEEecCChhHHHH
Q 013706 264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-KVVVIFAGYSEPMKRV 316 (438)
Q Consensus 264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-~v~vi~~~~~~~~~~~ 316 (438)
.+|++||+|.+..... ...+..++..+..+ +++++.||-++.+..+
T Consensus 157 ~~iViDEah~~~~~~~-------~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~ 203 (224)
T 1qde_A 157 KMFILDEADEMLSSGF-------KEQIYQIFTLLPPTTQVVLLSATMPNDVLEV 203 (224)
T ss_dssp CEEEEETHHHHHHTTC-------HHHHHHHHHHSCTTCEEEEEESSCCHHHHHH
T ss_pred cEEEEcChhHHhhhhh-------HHHHHHHHHhCCccCeEEEEEeecCHHHHHH
Confidence 7999999998865321 13345566666543 3555555545554433
No 347
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.42 E-value=0.0018 Score=55.99 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=24.0
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
.+..++|.|+||+||||+++.++..+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 445688999999999999999999886
No 348
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.40 E-value=0.0016 Score=55.14 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=19.2
Q ss_pred ceEEecCCCCCHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKTMVARILGR 221 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~ 221 (438)
.++|.||||+||||+++.++.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 467999999999999999987
No 349
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.36 E-value=0.0055 Score=54.23 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=20.7
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRL 222 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~ 222 (438)
+..-++++|+||+|||++|-.++..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 4445889999999999999887654
No 350
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=96.34 E-value=0.00018 Score=52.00 Aligned_cols=69 Identities=14% Similarity=0.178 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhccccccccccccccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccCCCCChhhh
Q 013706 339 EELAKILHIKMNNQTEDSLLYGFKLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSFDCLDTDEL 418 (438)
Q Consensus 339 ~e~~~il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~~~~~~~~~ 418 (438)
++|.+||+.++++. .+..+++.+.++..+. +.+|++|.+++..|...+..+ ..
T Consensus 1 ~~R~~Il~~~l~~~---------~~~~~vdl~~lA~~t~---------G~SGADi~~l~~eAa~~ai~~---------~~ 53 (82)
T 2dzn_B 1 MERRLIFGTIASKM---------SLAPEADLDSLIIRND---------SLSGAVIAAIMQEAGLRAVRK---------NR 53 (82)
T ss_dssp -------------C---------EECTTCCSTTTTTSSC---------CCCHHHHHHHHHHHHHHHHHT---------TC
T ss_pred CHHHHHHHHHHcCC---------CCCCcCCHHHHHHHcC---------CCCHHHHHHHHHHHHHHHHHh---------cc
Confidence 46788999888764 3334555555555544 455888899999988877554 23
Q ss_pred hhccHHHHHHHHHHHH
Q 013706 419 RTITLEDLEAGLKLLL 434 (438)
Q Consensus 419 ~~i~~~d~~~a~~~~~ 434 (438)
..|+.+||..|++.+.
T Consensus 54 ~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 54 YVILQSDLEEAYATQV 69 (82)
T ss_dssp SEECHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHH
Confidence 5799999999999874
No 351
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.34 E-value=0.0025 Score=54.80 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.6
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.+.|.|++|+|||++++.+++.++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~ 28 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGV 28 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 5789999999999999999998763
No 352
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.25 E-value=0.0029 Score=54.23 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.5
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l 223 (438)
+.-+.|.||+|+||||+++.++..+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3457899999999999999999864
No 353
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.22 E-value=0.0029 Score=54.12 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=21.9
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l 223 (438)
+..+.|.||+|+||||+.+.+...+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4568899999999999999998865
No 354
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.21 E-value=0.0021 Score=54.77 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.3
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~ 224 (438)
.+.|.|++|+||||+++.+++.++
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 477999999999999999999754
No 355
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=96.21 E-value=0.029 Score=49.74 Aligned_cols=46 Identities=22% Similarity=0.365 Sum_probs=27.4
Q ss_pred cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-CCEEEEEecCChhHHHH
Q 013706 264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV 316 (438)
Q Consensus 264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~v~vi~~~~~~~~~~~ 316 (438)
.+|++||+|.+....- ...+..++..+.. .+++++.||-++.+..+
T Consensus 188 ~~lViDEah~l~~~~~-------~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~ 234 (249)
T 3ber_A 188 KYLVMDEADRILNMDF-------ETEVDKILKVIPRDRKTFLFSATMTKKVQKL 234 (249)
T ss_dssp CEEEECSHHHHHHTTC-------HHHHHHHHHSSCSSSEEEEEESSCCHHHHHH
T ss_pred CEEEEcChhhhhccCh-------HHHHHHHHHhCCCCCeEEEEeccCCHHHHHH
Confidence 6899999998865311 1334566666654 34555556555555443
No 356
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.20 E-value=0.0026 Score=54.90 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=23.9
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.+..+.+.||+|+||||+++.|+..+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3445779999999999999999998863
No 357
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.20 E-value=0.0087 Score=51.93 Aligned_cols=92 Identities=18% Similarity=0.145 Sum_probs=47.8
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecc-------cccccccccc-----hHHHHHHHHHccC-cEEE
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRT-------DLVGEFVGHT-----GPKTRRRIKEAEG-GILF 267 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~-------~~~~~~~g~~-----~~~~~~~~~~a~~-~il~ 267 (438)
-.+++||.|+|||+.+-..+......+. .++.+.+. .+.+. .|.. -....++++.+.. -+|+
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~----kvli~kp~~D~Ryg~~i~sr-~G~~~~a~~i~~~~di~~~~~~~dvVi 95 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQY----KCLVIKYAKDTRYSSSFCTH-DRNTMEALPACLLRDVAQEALGVAVIG 95 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTC----CEEEEEETTCCCC------------CEEEEESSGGGGHHHHTTCSEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCC----eEEEEeecCCccchHHHHhh-cCCeeEEEecCCHHHHHHHhccCCEEE
Confidence 3568899999999776666555433221 22222211 01110 0110 0011123343333 6999
Q ss_pred EeCcccccCCCCCCCchhHHHHHHHHHhhccCCCEEEEEecCC
Q 013706 268 VDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGKVVVIFAGYS 310 (438)
Q Consensus 268 iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~v~vi~~~~~ 310 (438)
|||+.-+.. +.+++..+++..+.||+++-.
T Consensus 96 IDEaQF~~~-------------v~el~~~l~~~gi~VI~~GL~ 125 (234)
T 2orv_A 96 IDEGQFFPD-------------IVEFCEAMANAGKTVIVAALD 125 (234)
T ss_dssp ESSGGGCTT-------------HHHHHHHHHHTTCEEEEECCS
T ss_pred EEchhhhhh-------------HHHHHHHHHhCCCEEEEEecc
Confidence 999977631 356666666666677777644
No 358
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.20 E-value=0.0069 Score=59.30 Aligned_cols=30 Identities=33% Similarity=0.661 Sum_probs=25.7
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 227 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~ 227 (438)
.+..++|.|.||+|||++++.+++.+...+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 345689999999999999999999987643
No 359
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.19 E-value=0.0027 Score=54.50 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=19.9
Q ss_pred ceEEecCCCCCHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKTMVARILGR 221 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~ 221 (438)
.+.+.||+|+||||+++.+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 578999999999999999998
No 360
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.17 E-value=0.0025 Score=53.88 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.7
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
.-+.|.||+|+||||+++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3578999999999999999998664
No 361
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.17 E-value=0.0022 Score=57.27 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=24.3
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.+..|.|.|+||+||||+|+.|++.++.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4456889999999999999999998764
No 362
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.13 E-value=0.0028 Score=54.28 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=22.1
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRL 222 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~ 222 (438)
.+..+.|.|++|+|||++++.|++.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4556889999999999999999984
No 363
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=96.06 E-value=0.015 Score=56.87 Aligned_cols=24 Identities=29% Similarity=0.180 Sum_probs=20.1
Q ss_pred CceEEecCCCCCHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l 223 (438)
.++++.+|+|+|||.++-.++..+
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 359999999999999987776655
No 364
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.06 E-value=0.0039 Score=54.95 Aligned_cols=30 Identities=23% Similarity=0.378 Sum_probs=24.9
Q ss_pred CCCCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 196 ARRPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 196 ~~~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
...+..+.|.|++|+|||++++.+++.++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~ 42 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGF 42 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 345667889999999999999999997753
No 365
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.05 E-value=0.0028 Score=58.11 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.7
Q ss_pred CceEEecCCCCCHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRL 222 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~ 222 (438)
..++|.|+||+||||+|+.+++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35889999999999999999984
No 366
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.05 E-value=0.0026 Score=54.67 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=19.4
Q ss_pred ceEEecCCCCCHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKTMVARILGR 221 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~ 221 (438)
.+.|.||+|+||||+++.++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 477999999999999999987
No 367
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=96.04 E-value=0.046 Score=48.79 Aligned_cols=46 Identities=20% Similarity=0.332 Sum_probs=28.3
Q ss_pred cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCC-EEEEEecCChhHHHH
Q 013706 264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-VVVIFAGYSEPMKRV 316 (438)
Q Consensus 264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~-v~vi~~~~~~~~~~~ 316 (438)
.+|+|||+|.+....- ...+..++..+.... ++++-||-++.+..+
T Consensus 203 ~~lViDEah~l~~~~~-------~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~ 249 (262)
T 3ly5_A 203 QCLVIDEADRILDVGF-------EEELKQIIKLLPTRRQTMLFSATQTRKVEDL 249 (262)
T ss_dssp CEEEECSHHHHHHTTC-------HHHHHHHHHHSCSSSEEEEECSSCCHHHHHH
T ss_pred CEEEEcChHHHhhhhH-------HHHHHHHHHhCCCCCeEEEEEecCCHHHHHH
Confidence 7899999999875311 134566666665543 444455556665544
No 368
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.03 E-value=0.0034 Score=55.98 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=22.8
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
...+.|.||+|+||||+++.|++.++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34678999999999999999998774
No 369
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.02 E-value=0.023 Score=55.02 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=23.4
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
+..-+++.|+||+|||++|-.+|.....
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~ 223 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSD 223 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHH
Confidence 4445889999999999999999887654
No 370
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.01 E-value=0.004 Score=54.66 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=24.0
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.+.-++|.||||+||||+++.+++.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3445789999999999999999998864
No 371
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.99 E-value=0.0032 Score=58.34 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=22.0
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~ 224 (438)
-+++.||+|+|||++|+.||+.++
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 578999999999999999999875
No 372
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.98 E-value=0.015 Score=53.21 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=24.2
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
++.-++|.||+|+||||++..+|..+..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 4456789999999999999999998865
No 373
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.96 E-value=0.0039 Score=53.80 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=23.2
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
++.-+.|.||+|+||||+++.|+..+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344577999999999999999999875
No 374
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.96 E-value=0.0076 Score=58.16 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=23.1
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
....++|+||||+|||+|+..++....
T Consensus 150 kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 150 KGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp TTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 345799999999999999999987664
No 375
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.94 E-value=0.002 Score=55.72 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.5
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
-+.|.||+|+||||+++.|++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3789999999999999999998864
No 376
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.94 E-value=0.044 Score=46.74 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=15.9
Q ss_pred CceEEecCCCCCHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARI 218 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~ 218 (438)
.++++.+|+|+|||..+-.
T Consensus 39 ~~~li~~~TGsGKT~~~~~ 57 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFAL 57 (207)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 5799999999999986443
No 377
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=95.93 E-value=0.031 Score=56.44 Aligned_cols=29 Identities=28% Similarity=0.252 Sum_probs=23.3
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVG 227 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~ 227 (438)
..++++.+|+|+|||.++-.++..+...+
T Consensus 198 ~~~~ll~~~TGsGKT~~~~~~~~~l~~~~ 226 (590)
T 3h1t_A 198 KKRSLITMATGTGKTVVAFQISWKLWSAR 226 (590)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred CCceEEEecCCCChHHHHHHHHHHHHhcc
Confidence 35789999999999999888877765433
No 378
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.92 E-value=0.0042 Score=53.90 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=23.3
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
+..+.|.|+||+|||++++.+++.++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~ 29 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSM 29 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 356889999999999999999997653
No 379
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=95.91 E-value=0.046 Score=47.18 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=18.2
Q ss_pred CceEEecCCCCCHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRL 222 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~ 222 (438)
.++++.+|+|+|||..+-..+..
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHHH
Confidence 56999999999999876555443
No 380
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=95.90 E-value=0.057 Score=55.86 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=17.0
Q ss_pred CCceEEecCCCCCHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVAR 217 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~ 217 (438)
..++++.||+|+|||+.+-
T Consensus 39 ~~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAE 57 (720)
T ss_dssp TCEEEEECCGGGCHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHH
Confidence 5789999999999999884
No 381
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.89 E-value=0.0036 Score=56.85 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.4
Q ss_pred CCceEEecCCCCCHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGR 221 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~ 221 (438)
+..|.|.|+||+||||+|+.++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 44588999999999999999994
No 382
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.86 E-value=0.0033 Score=53.25 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=21.9
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l 223 (438)
...++|.||||+|||++|..+++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4579999999999999999998743
No 383
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.86 E-value=0.0075 Score=49.90 Aligned_cols=29 Identities=17% Similarity=0.072 Sum_probs=24.8
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVG 227 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~ 227 (438)
.+-+.|.|++|+|||+++..++..+...+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g 32 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREG 32 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcC
Confidence 45688999999999999999999886544
No 384
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.86 E-value=0.023 Score=54.74 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=25.0
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHc
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMV 226 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~ 226 (438)
.+..++|.|+||+|||+++..+|..+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45679999999999999999999988543
No 385
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.85 E-value=0.0046 Score=53.77 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=22.7
Q ss_pred CCCCceEEecCCCCCHHHHHHHHHHHH
Q 013706 197 RRPPHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 197 ~~~~~~ll~GppGtGKT~la~~la~~l 223 (438)
.+..-+.|.||+|+||||+++.|+..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345568899999999999999999855
No 386
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.84 E-value=0.016 Score=59.22 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=17.3
Q ss_pred CceEEecCCCCCHHHH-HHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMV-ARILGRLL 223 (438)
Q Consensus 200 ~~~ll~GppGtGKT~l-a~~la~~l 223 (438)
.-.|+.||||||||++ +..|+..+
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~I~~l~ 230 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEIILQAV 230 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999964 44444444
No 387
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.84 E-value=0.0045 Score=53.25 Aligned_cols=26 Identities=27% Similarity=0.369 Sum_probs=21.8
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l 223 (438)
.+.-+.+.||||+||||+++.|+..+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 34457799999999999999999754
No 388
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.82 E-value=0.0069 Score=58.29 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.8
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l 223 (438)
+.-++|.|+||+|||++|+.+++.+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhc
Confidence 4557899999999999999998865
No 389
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=95.79 E-value=0.079 Score=48.36 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=29.4
Q ss_pred cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-CCEEEEEecCChhHHHH
Q 013706 264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV 316 (438)
Q Consensus 264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~v~vi~~~~~~~~~~~ 316 (438)
.+|+|||+|.+....+ ....+..++..+.. .+++++-||-++.+..+
T Consensus 237 ~~lVlDEad~l~~~~~------~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~ 284 (300)
T 3fmo_B 237 KVFVLDEADVMIATQG------HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKF 284 (300)
T ss_dssp SEEEETTHHHHHHSTT------HHHHHHHHHTTSCTTCEEEEEESCCCHHHHHH
T ss_pred eEEEEeCHHHHhhccC------cHHHHHHHHHhCCCCCEEEEEeccCCHHHHHH
Confidence 7999999999874211 12334556666654 44666667767766544
No 390
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=95.78 E-value=0.077 Score=50.09 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=18.2
Q ss_pred CCCceEEecCCCCCHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILG 220 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la 220 (438)
.+.++++.+|+|+|||..+-..+
T Consensus 43 ~~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 43 PPRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp SCCCEEEECCTTSCHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHH
Confidence 34789999999999998665443
No 391
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.77 E-value=0.05 Score=47.70 Aligned_cols=18 Identities=28% Similarity=0.254 Sum_probs=15.3
Q ss_pred CceEEecCCCCCHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVAR 217 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~ 217 (438)
.++++.+|+|+|||..+-
T Consensus 68 ~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 68 YDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CCEEECCCSSHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHH
Confidence 579999999999997643
No 392
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=95.77 E-value=0.058 Score=47.47 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=15.4
Q ss_pred CceEEecCCCCCHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVAR 217 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~ 217 (438)
.++++.+|+|+|||..+-
T Consensus 67 ~~~l~~a~TGsGKT~~~~ 84 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAFS 84 (245)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCCcHHHHHH
Confidence 579999999999998643
No 393
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.74 E-value=0.0048 Score=51.36 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=17.9
Q ss_pred CCceEEecCCCCCHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARIL 219 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~l 219 (438)
+.-+.|.||+|+||||+++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 445789999999999999963
No 394
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.74 E-value=0.011 Score=54.08 Aligned_cols=29 Identities=31% Similarity=0.414 Sum_probs=24.5
Q ss_pred CCCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 197 RRPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 197 ~~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.++.-+.|.||+|+||||+++.+|..+..
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 34456789999999999999999998764
No 395
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.74 E-value=0.034 Score=54.08 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=24.9
Q ss_pred CCCCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 196 ARRPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 196 ~~~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
...+.-++|.||+|+||||+++.|+..+..
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~ 319 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQ 319 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhh
Confidence 334556789999999999999999998764
No 396
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.73 E-value=0.0057 Score=52.38 Aligned_cols=28 Identities=25% Similarity=0.213 Sum_probs=23.7
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.+.-+.+.||+|+||||+++.++..+..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3445779999999999999999998754
No 397
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.68 E-value=0.0028 Score=58.85 Aligned_cols=28 Identities=14% Similarity=0.056 Sum_probs=23.5
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
+..-+++.|+||+|||++|..+|..+..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~ 72 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN 72 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4445889999999999999999887654
No 398
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.67 E-value=0.009 Score=52.50 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=26.4
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGI 228 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~ 228 (438)
.+.-|+|.|++|+||||+++.+++.+...++
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~ 56 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGI 56 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 3456889999999999999999999987554
No 399
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.67 E-value=0.036 Score=55.01 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=21.1
Q ss_pred CCCceEEecCCCCCHHHHHHHH--HHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARIL--GRLL 223 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~l--a~~l 223 (438)
+...++|.||+|+|||++++.+ +..+
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 4556889999999999999994 4444
No 400
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.67 E-value=0.062 Score=47.22 Aligned_cols=46 Identities=17% Similarity=0.361 Sum_probs=28.4
Q ss_pred cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-CCEEEEEecCChhHHHH
Q 013706 264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV 316 (438)
Q Consensus 264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~v~vi~~~~~~~~~~~ 316 (438)
..|+|||+|.+.... + ...+..++..+.. .+++++.||-++.+..+
T Consensus 178 ~~lViDEah~l~~~~------~-~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~ 224 (242)
T 3fe2_A 178 TYLVLDEADRMLDMG------F-EPQIRKIVDQIRPDRQTLMWSATWPKEVRQL 224 (242)
T ss_dssp CEEEETTHHHHHHTT------C-HHHHHHHHTTSCSSCEEEEEESCCCHHHHHH
T ss_pred cEEEEeCHHHHhhhC------c-HHHHHHHHHhCCccceEEEEEeecCHHHHHH
Confidence 689999999987522 1 1344566666654 34555556656555544
No 401
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.66 E-value=0.0059 Score=52.97 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.7
Q ss_pred CCceEEecCCCCCHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGR 221 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~ 221 (438)
+..+.|.|++|+||||+++.+++
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 34688999999999999999987
No 402
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=95.66 E-value=0.044 Score=47.30 Aligned_cols=46 Identities=30% Similarity=0.372 Sum_probs=27.9
Q ss_pred cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-CEEEEEecCChhHHHH
Q 013706 264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-KVVVIFAGYSEPMKRV 316 (438)
Q Consensus 264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-~v~vi~~~~~~~~~~~ 316 (438)
.+|++||+|.+..... ...+..++..+..+ +++++.||-++.+..+
T Consensus 152 ~~lViDEah~~~~~~~-------~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~ 198 (219)
T 1q0u_A 152 HILVVDEADLMLDMGF-------ITDVDQIAARMPKDLQMLVFSATIPEKLKPF 198 (219)
T ss_dssp CEEEECSHHHHHHTTC-------HHHHHHHHHTSCTTCEEEEEESCCCGGGHHH
T ss_pred eEEEEcCchHHhhhCh-------HHHHHHHHHhCCcccEEEEEecCCCHHHHHH
Confidence 7899999999874221 13345666666543 4555556555555443
No 403
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.65 E-value=0.0075 Score=52.16 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=25.4
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGI 228 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~ 228 (438)
+.-|+|.||+|+||||+++.+++.+...++
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 35 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGI 35 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 345789999999999999999999976543
No 404
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.63 E-value=0.0077 Score=54.80 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=24.3
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.+.-+.+.||+|+||||+++.|+..+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4455779999999999999999998865
No 405
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.63 E-value=0.0096 Score=57.08 Aligned_cols=23 Identities=26% Similarity=0.166 Sum_probs=18.4
Q ss_pred CCceEEecCCCCCHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGR 221 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~ 221 (438)
.+-.++.|+||||||++...++.
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccEEEEEcCCCCCHHHHHHHHhc
Confidence 33467899999999999877653
No 406
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=95.62 E-value=0.048 Score=47.54 Aligned_cols=47 Identities=21% Similarity=0.360 Sum_probs=28.5
Q ss_pred cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-CCEEEEEecCChhHHHH
Q 013706 264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKRV 316 (438)
Q Consensus 264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~v~vi~~~~~~~~~~~ 316 (438)
.+|++||+|.+..... + ...+..++..+.. .+++++.||-++.+..+
T Consensus 168 ~~lViDEah~~~~~~~-----~-~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~ 215 (230)
T 2oxc_A 168 RLFILDEADKLLEEGS-----F-QEQINWIYSSLPASKQMLAVSATYPEFLANA 215 (230)
T ss_dssp CEEEESSHHHHHSTTS-----S-HHHHHHHHHHSCSSCEEEEEESCCCHHHHHH
T ss_pred CEEEeCCchHhhcCcc-----h-HHHHHHHHHhCCCCCeEEEEEeccCHHHHHH
Confidence 5899999999975320 1 1344566666654 34555556655555443
No 407
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.61 E-value=0.0086 Score=54.72 Aligned_cols=28 Identities=36% Similarity=0.618 Sum_probs=24.1
Q ss_pred CCCCCceEEecCCCCCHHHHHHHHHHHH
Q 013706 196 ARRPPHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 196 ~~~~~~~ll~GppGtGKT~la~~la~~l 223 (438)
.++...+.|.||+|+|||||++.|+..+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3455668899999999999999999977
No 408
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.58 E-value=0.076 Score=55.96 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=54.5
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHH--HcCCcCCCCEEEeec----------cccccccccc---chHHHHHHHHHc-c
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLY--MVGILPTDRVTEVQR----------TDLVGEFVGH---TGPKTRRRIKEA-E 262 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~--~~~~~~~~~~~~~~~----------~~~~~~~~g~---~~~~~~~~~~~a-~ 262 (438)
..-++|.||.|+||||+.|.++.... ..+.........+.. .+........ ....+..++..+ .
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~a~~ 752 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRKATS 752 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHHCCT
T ss_pred CeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHhccC
Confidence 34578999999999999999986432 122111111111111 1111110110 112223334433 5
Q ss_pred CcEEEEeCcccccCCCCCCCchhHHHHHHHHHhhc-cCCCEEEEEecCChhHH
Q 013706 263 GGILFVDEAYRLIPMQKADDKDYGIEALEEIMSVM-DGGKVVVIFAGYSEPMK 314 (438)
Q Consensus 263 ~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~-~~~~v~vi~~~~~~~~~ 314 (438)
+.+|++||.-+=. .......+...++..+ +.....+|++|....+.
T Consensus 753 p~LlLLDEP~~Gl------D~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~ 799 (918)
T 3thx_B 753 QSLVILDELGRGT------STHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC 799 (918)
T ss_dssp TCEEEEESTTTTS------CHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred CCEEEEeCCCCCC------CHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH
Confidence 6999999984322 1223334445667666 33345666676654443
No 409
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.57 E-value=0.12 Score=45.14 Aligned_cols=46 Identities=17% Similarity=0.350 Sum_probs=28.1
Q ss_pred cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCCC-EEEEEecCChhHHHH
Q 013706 264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGGK-VVVIFAGYSEPMKRV 316 (438)
Q Consensus 264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~~-v~vi~~~~~~~~~~~ 316 (438)
..|++||+|.+..... ...+..++..+..+. ++++.||-++.+..+
T Consensus 173 ~~lViDEah~~~~~~~-------~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~ 219 (236)
T 2pl3_A 173 QMLVLDEADRILDMGF-------ADTMNAVIENLPKKRQTLLFSATQTKSVKDL 219 (236)
T ss_dssp CEEEETTHHHHHHTTT-------HHHHHHHHHTSCTTSEEEEEESSCCHHHHHH
T ss_pred cEEEEeChHHHhcCCc-------HHHHHHHHHhCCCCCeEEEEEeeCCHHHHHH
Confidence 6899999998864211 134466666665544 555555555555544
No 410
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.56 E-value=0.056 Score=49.82 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=25.2
Q ss_pred CCCCceEEecCCCCCHHHHHHHHHHHHHHc
Q 013706 197 RRPPHMAFLGNPGTGKTMVARILGRLLYMV 226 (438)
Q Consensus 197 ~~~~~~ll~GppGtGKT~la~~la~~l~~~ 226 (438)
.++.-+++.||+|+||||++..+|..+...
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 345568899999999999999999988653
No 411
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.55 E-value=0.058 Score=56.95 Aligned_cols=110 Identities=18% Similarity=0.146 Sum_probs=54.4
Q ss_pred CceEEecCCCCCHHHHHHHHHHHH--HHcCCcCCCCEEEeeccccccccccc-------------chHHHHHHHHHc-cC
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLL--YMVGILPTDRVTEVQRTDLVGEFVGH-------------TGPKTRRRIKEA-EG 263 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l--~~~~~~~~~~~~~~~~~~~~~~~~g~-------------~~~~~~~~~~~a-~~ 263 (438)
.-++|.||.|+||||+.|.++-.. ...|.........+...+-+-..+|- ....+..++..+ .+
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~a~~~ 742 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRSATKD 742 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHHHCCTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHhccCC
Confidence 347899999999999999996533 21222111111111111100001111 011223344434 45
Q ss_pred cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccC-CCEEEEEecCChhHHH
Q 013706 264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDG-GKVVVIFAGYSEPMKR 315 (438)
Q Consensus 264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~-~~v~vi~~~~~~~~~~ 315 (438)
.+|++||.-+=. .......+...++..+.. ....+|++|....+..
T Consensus 743 sLlLLDEp~~Gl------D~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~ 789 (934)
T 3thx_A 743 SLIIIDELGRGT------STYDGFGLAWAISEYIATKIGAFCMFATHFHELTA 789 (934)
T ss_dssp CEEEEESCSCSS------CHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGG
T ss_pred cEEEEeCCCCCC------CHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHH
Confidence 899999984322 122333444666666643 3456666666544433
No 412
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=95.54 E-value=0.044 Score=52.07 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=26.7
Q ss_pred cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhccCC-CEEEEEecCChhHH
Q 013706 264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMDGG-KVVVIFAGYSEPMK 314 (438)
Q Consensus 264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~~~-~v~vi~~~~~~~~~ 314 (438)
.+|++||+|.+... .....+..++..+... .++++.||-+....
T Consensus 165 ~~vIiDEaH~~~~~-------~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~ 209 (400)
T 1s2m_A 165 SLFIMDEADKMLSR-------DFKTIIEQILSFLPPTHQSLLFSATFPLTVK 209 (400)
T ss_dssp CEEEEESHHHHSSH-------HHHHHHHHHHTTSCSSCEEEEEESCCCHHHH
T ss_pred CEEEEeCchHhhhh-------chHHHHHHHHHhCCcCceEEEEEecCCHHHH
Confidence 79999999988642 1234456666666544 44555555454443
No 413
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.54 E-value=0.0075 Score=53.43 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=23.2
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
++.-+-|.||+|+||||+++.|+..++.
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhch
Confidence 3345779999999999999999997743
No 414
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.53 E-value=0.0076 Score=49.40 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.5
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l 223 (438)
+..-+.|.||.|+||||+.+.++..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 33457899999999999999999876
No 415
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=95.52 E-value=0.08 Score=54.71 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=18.8
Q ss_pred CCCceEEecCCCCCHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILG 220 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la 220 (438)
...++++.||+|+|||+.+-...
T Consensus 45 ~~~~~lv~apTGsGKT~~~~l~i 67 (715)
T 2va8_A 45 EGNRLLLTSPTGSGKTLIAEMGI 67 (715)
T ss_dssp TTCCEEEECCTTSCHHHHHHHHH
T ss_pred CCCcEEEEcCCCCcHHHHHHHHH
Confidence 35789999999999999885443
No 416
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=95.50 E-value=0.085 Score=48.58 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=17.8
Q ss_pred CceEEecCCCCCHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGR 221 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~ 221 (438)
.++++.+|+|+|||..+-..+.
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~ 53 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPIL 53 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEcCCCCcHHHHHHHHHH
Confidence 5799999999999987655543
No 417
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.50 E-value=0.0074 Score=51.93 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=22.3
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l 223 (438)
...-+.|.||+|+||||++++|+..+
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34457799999999999999999865
No 418
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.49 E-value=0.039 Score=51.56 Aligned_cols=23 Identities=22% Similarity=0.083 Sum_probs=18.6
Q ss_pred CceEEecCCCCCHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRL 222 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~ 222 (438)
.++++.+|+|+|||+.+-..+..
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHH
Confidence 58999999999999887655443
No 419
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.48 E-value=0.0092 Score=51.86 Aligned_cols=26 Identities=15% Similarity=0.172 Sum_probs=22.3
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l 223 (438)
...-+.|.||+|+|||||.+.++..+
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34467899999999999999998865
No 420
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=95.48 E-value=0.007 Score=51.87 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=23.4
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.-|.+.||+|+|||++++.+|+.++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 35789999999999999999999875
No 421
>1qzm_A ATP-dependent protease LA; oligomerization domain, AAA+ protein, hydrolase; 1.90A {Escherichia coli} SCOP: c.37.1.20
Probab=95.45 E-value=0.017 Score=42.22 Aligned_cols=87 Identities=15% Similarity=0.066 Sum_probs=64.3
Q ss_pred CCCCHHHHHHHHHHHHhccccccccccc-cccccccHHHHHHHHHHHhhHhhhccccccchHHHHHHHHHHhhccccC-C
Q 013706 334 NDFNSEELAKILHIKMNNQTEDSLLYGF-KLHSSCSMDAIAALIEKETTEKQRREMNGGLVDPMLVNARENLDLRLSF-D 411 (438)
Q Consensus 334 ~~~~~~e~~~il~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~~~~r~~~-~ 411 (438)
+.|+.+|...|.++||-.... ...|+ .-...++++++..++++|+ +.-.+|.|...+....|+++.++.. +
T Consensus 1 sGYt~~EK~~IAk~~LiPkql--~~~GL~~~~~~i~d~al~~iI~~YT-----REaGVRnLer~i~~i~RK~a~~i~~~~ 73 (94)
T 1qzm_A 1 SGYTEDEKLNIAKRHLLPKQI--ERNALKKGELTVDDSAIIGIIRYYT-----REAGVRGLEREISKLCRKAVKQLLLDK 73 (94)
T ss_dssp CCCCHHHHHHHHHHTHHHHHH--HHTTCCTTTEEECHHHHHHHHHHHC-----CCSSSHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CCCCHHHHHHHHHHhccHHHH--HHhCCChhhceECHHHHHHHHHHhc-----ccccchHHHHHHHHHHHHHHHHHHHcC
Confidence 578999999999999976542 33466 3445789999999999998 3445788888888888988888763 2
Q ss_pred CCChhhhhhccHHHHHHHH
Q 013706 412 CLDTDELRTITLEDLEAGL 430 (438)
Q Consensus 412 ~~~~~~~~~i~~~d~~~a~ 430 (438)
. .....|+.+++.+.|
T Consensus 74 ~---~~~v~v~~~~l~~~L 89 (94)
T 1qzm_A 74 S---LKHIEINGDNLHDYL 89 (94)
T ss_dssp T---CCCEEECTTTTHHHH
T ss_pred C---CCCeeECHHHHHHHc
Confidence 2 123567888777654
No 422
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.43 E-value=0.0046 Score=54.27 Aligned_cols=26 Identities=27% Similarity=0.201 Sum_probs=16.4
Q ss_pred CCCceEEecCCCCCHHHHHHHHH-HHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILG-RLL 223 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la-~~l 223 (438)
+..-+.|.||+|+||||+++.|+ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 44567899999999999999999 754
No 423
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.42 E-value=0.011 Score=54.16 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=23.9
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.+..+.|.||+|+||||+++.++..+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 3456789999999999999999988753
No 424
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.41 E-value=0.015 Score=54.41 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=24.2
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
++.-+.|.||+|+||||+++.||..+..
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 4556789999999999999999998764
No 425
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.41 E-value=0.032 Score=55.05 Aligned_cols=28 Identities=7% Similarity=-0.096 Sum_probs=23.0
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
+..-+++.|+||+|||++|-.+|..+..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~ 268 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGT 268 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHH
Confidence 3445889999999999999999886643
No 426
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.40 E-value=0.011 Score=53.89 Aligned_cols=27 Identities=19% Similarity=0.461 Sum_probs=20.5
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
+.-|.+.||+|+||||+|+.+++.++.
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~ 31 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRR 31 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345789999999999999999998864
No 427
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=95.39 E-value=0.05 Score=51.90 Aligned_cols=21 Identities=29% Similarity=0.235 Sum_probs=16.8
Q ss_pred CceEEecCCCCCHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILG 220 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la 220 (438)
.++++.+|+|+|||..+-..+
T Consensus 75 ~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 75 RDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CCEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEECCCCCCchHHHHHHH
Confidence 579999999999997665433
No 428
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.36 E-value=0.014 Score=50.43 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=25.5
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYMVGI 228 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~~~~ 228 (438)
.-|.|.|++|+||||.++.+++.+...++
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 45889999999999999999999987654
No 429
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.34 E-value=0.024 Score=57.02 Aligned_cols=37 Identities=30% Similarity=0.337 Sum_probs=28.3
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEee
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQ 238 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 238 (438)
.+..|+|.|+||+||||+|+.|++.+...+. +++.++
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~----~~v~lD 87 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGI----PCYTLD 87 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC----CEEEES
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC----eEEEec
Confidence 3456889999999999999999999854332 555554
No 430
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.33 E-value=0.011 Score=53.91 Aligned_cols=28 Identities=14% Similarity=0.076 Sum_probs=23.9
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
+..-++|.||||+|||++++.++..+..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4456889999999999999999987754
No 431
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=95.32 E-value=0.041 Score=52.40 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=16.4
Q ss_pred CCceEEecCCCCCHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVAR 217 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~ 217 (438)
+.++++.+|+|+|||..+-
T Consensus 64 ~~~~lv~apTGsGKT~~~~ 82 (412)
T 3fht_A 64 PQNLIAQSQSGTGKTAAFV 82 (412)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCchHHHHHH
Confidence 5789999999999998753
No 432
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.31 E-value=0.01 Score=51.76 Aligned_cols=28 Identities=25% Similarity=0.231 Sum_probs=21.6
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHc
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMV 226 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~ 226 (438)
+.-|+|.||+|+||||+++.+++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4568899999999999999999999764
No 433
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.28 E-value=0.012 Score=54.31 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=23.0
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
.|.-+.|.||+|+||||+++.|+..+.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344577999999999999999998775
No 434
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.28 E-value=0.011 Score=54.38 Aligned_cols=28 Identities=32% Similarity=0.419 Sum_probs=23.5
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.+.-+.|.||+|+||||+++.|+..+..
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 3445779999999999999999998753
No 435
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.27 E-value=0.24 Score=48.56 Aligned_cols=30 Identities=27% Similarity=0.399 Sum_probs=24.5
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMVG 227 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~~ 227 (438)
.+..++|.|+||+||||++..||..+...+
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G 129 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKG 129 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 456788999999999999999998886544
No 436
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=95.25 E-value=0.042 Score=54.33 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=16.9
Q ss_pred CCceEEecCCCCCHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARI 218 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~ 218 (438)
..++++.+|+|+|||..+-.
T Consensus 158 ~~~~ll~apTGsGKT~~~~~ 177 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFAL 177 (508)
T ss_dssp CCCEEEECCSSTTSHHHHHH
T ss_pred CCCEEEECCCCccHHHHHHH
Confidence 47899999999999987543
No 437
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.25 E-value=0.017 Score=48.07 Aligned_cols=29 Identities=38% Similarity=0.440 Sum_probs=24.4
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVG 227 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~ 227 (438)
.+-+.|.||+|+|||++++.+...+...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g 34 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARG 34 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccC
Confidence 45688999999999999999998876543
No 438
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=95.25 E-value=0.049 Score=49.19 Aligned_cols=23 Identities=13% Similarity=0.303 Sum_probs=19.0
Q ss_pred ceEEecCCCCCHHHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l 223 (438)
+.++.+|+|+|||.++-.++...
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~~ 152 (282)
T 1rif_A 130 RRILNLPTSAGRSLIQALLARYY 152 (282)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHH
T ss_pred CeEEEcCCCCCcHHHHHHHHHHH
Confidence 46789999999999997776654
No 439
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.23 E-value=0.0079 Score=53.10 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=22.8
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
+..+.|.|++|+||||+++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34688999999999999999999773
No 440
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.16 E-value=0.014 Score=50.80 Aligned_cols=31 Identities=29% Similarity=0.471 Sum_probs=26.2
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH-cCC
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM-VGI 228 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~-~~~ 228 (438)
.+.-|.|.|++|+|||++++.+++.+.. .+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~ 51 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGV 51 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCc
Confidence 4456789999999999999999999976 554
No 441
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.14 E-value=0.015 Score=50.32 Aligned_cols=27 Identities=30% Similarity=0.191 Sum_probs=24.0
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
+.-|+|.|++|+||||+++.+++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 456889999999999999999998864
No 442
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=95.11 E-value=0.047 Score=53.48 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=16.4
Q ss_pred CCCceEEecCCCCCHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVA 216 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la 216 (438)
.+.++++.+|+|+|||..+
T Consensus 130 ~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 130 PPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp SCCEEEEECCSSSSHHHHH
T ss_pred CCCcEEEEcCCCCchhHHH
Confidence 4578999999999999764
No 443
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=95.08 E-value=0.15 Score=45.06 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=15.8
Q ss_pred CceEEecCCCCCHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARI 218 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~ 218 (438)
.++++.+|+|+|||..+-.
T Consensus 61 ~~~l~~a~TGsGKT~~~~~ 79 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFLI 79 (253)
T ss_dssp CCEEEECCTTSSHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 5799999999999976543
No 444
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=95.05 E-value=0.09 Score=49.65 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=18.0
Q ss_pred CCceEEecCCCCCHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGR 221 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~ 221 (438)
..++++.+|+|+|||..+-..+.
T Consensus 45 ~~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 45 GMDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp TCCEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHHH
Confidence 36799999999999987654443
No 445
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.03 E-value=0.018 Score=48.53 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=21.5
Q ss_pred CCCceEEecCCCCCHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGR 221 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~ 221 (438)
....+++.|++|+|||++...+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999976
No 446
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.02 E-value=0.18 Score=52.52 Aligned_cols=24 Identities=17% Similarity=0.141 Sum_probs=21.1
Q ss_pred CceEEecCCCCCHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l 223 (438)
.-++|.||.|+||||+.|.++...
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 357899999999999999999864
No 447
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.01 E-value=0.013 Score=48.28 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=21.4
Q ss_pred CCCceEEecCCCCCHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGR 221 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~ 221 (438)
...++||.||+|+|||++|..+.+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 356899999999999999999887
No 448
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=94.93 E-value=0.13 Score=53.07 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=17.8
Q ss_pred CCceEEecCCCCCHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARIL 219 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~l 219 (438)
..++++.+|+|+|||+.+-..
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~ 60 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMA 60 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHH
T ss_pred CCcEEEEcCCccHHHHHHHHH
Confidence 468999999999999988444
No 449
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.91 E-value=0.017 Score=49.86 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.2
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRL 222 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~ 222 (438)
....++|.|++|+|||++...+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5678999999999999999999863
No 450
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.91 E-value=0.015 Score=53.85 Aligned_cols=28 Identities=32% Similarity=0.459 Sum_probs=24.1
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
++.-+.|.||+|+||||+++.|+..+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4456789999999999999999998764
No 451
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=94.90 E-value=0.063 Score=51.16 Aligned_cols=21 Identities=29% Similarity=0.177 Sum_probs=16.7
Q ss_pred CceEEecCCCCCHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILG 220 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la 220 (438)
.++++.+|+|+|||+.+-..+
T Consensus 78 ~~~lv~a~TGsGKT~~~~~~~ 98 (414)
T 3eiq_A 78 YDVIAQAQSGTGKTATFAISI 98 (414)
T ss_dssp CCEEECCCSCSSSHHHHHHHH
T ss_pred CCEEEECCCCCcccHHHHHHH
Confidence 469999999999998754433
No 452
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=94.86 E-value=0.015 Score=50.65 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=23.2
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.-|.+.|++|+|||++|+.+|+.++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~ 40 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGI 40 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCC
Confidence 35779999999999999999999865
No 453
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=94.83 E-value=0.23 Score=53.23 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=17.5
Q ss_pred CceEEecCCCCCHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILG 220 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la 220 (438)
.++++.+|+|+|||.++....
T Consensus 102 ~~vLV~apTGSGKTlva~lai 122 (1010)
T 2xgj_A 102 ESVLVSAHTSAGKTVVAEYAI 122 (1010)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHHH
Confidence 579999999999999875443
No 454
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.80 E-value=0.064 Score=49.85 Aligned_cols=27 Identities=37% Similarity=0.602 Sum_probs=23.1
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
....+.|.||||+||||+.+.++..+.
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 445678999999999999999998764
No 455
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.78 E-value=0.0048 Score=55.34 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=22.8
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l 223 (438)
.+.-|+|.|++|+||||+++.|++.+
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45568899999999999999999866
No 456
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.76 E-value=0.018 Score=52.91 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=22.4
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
+.-+.|.||+|+||||+++.|+..+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34577999999999999999998764
No 457
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=94.76 E-value=0.052 Score=51.37 Aligned_cols=19 Identities=32% Similarity=0.296 Sum_probs=15.7
Q ss_pred CceEEecCCCCCHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARI 218 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~ 218 (438)
.++++.+|+|+|||..+-.
T Consensus 59 ~~~lv~~~TGsGKT~~~~~ 77 (394)
T 1fuu_A 59 HDVLAQAQSGTGKTGTFSI 77 (394)
T ss_dssp CCEEECCCSSHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 4699999999999987543
No 458
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.74 E-value=0.017 Score=58.67 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=20.3
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
+..++.||||||||+++..+...+.
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l~ 220 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHLA 220 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999998777766553
No 459
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.73 E-value=0.014 Score=57.37 Aligned_cols=27 Identities=4% Similarity=-0.080 Sum_probs=24.2
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
...++|.|.+|+||||+|++||+.|+.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 356889999999999999999999974
No 460
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=94.71 E-value=0.17 Score=48.91 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.1
Q ss_pred ceEEecCCCCCHHHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l 223 (438)
++++..|+|+|||..+-.++...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~ 47 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYR 47 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 89999999999999888876655
No 461
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.67 E-value=0.082 Score=49.57 Aligned_cols=64 Identities=11% Similarity=0.095 Sum_probs=41.2
Q ss_pred CCCCCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccccccchHHHHHHHHHccCcEEEEeC
Q 013706 196 ARRPPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEFVGHTGPKTRRRIKEAEGGILFVDE 270 (438)
Q Consensus 196 ~~~~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~~~il~iDE 270 (438)
......+++.||||+|||++++.|++.+...+. ...++ --.+|+....+....+.-+ +++|.--
T Consensus 171 i~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~--~v~~I--------~~lIGER~~Ev~~~~~~~~-~~vV~at 234 (422)
T 3ice_A 171 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHP--DCVLM--------VLLIDERPEEVTEMQRLVK-GEVVAST 234 (422)
T ss_dssp CBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCT--TSEEE--------EEEESSCHHHHHHHHTTCS-SEEEEEC
T ss_pred ecCCcEEEEecCCCCChhHHHHHHHHHHhhcCC--CeeEE--------EEEecCChHHHHHHHHHhC-eEEEEeC
Confidence 345668999999999999999999987754221 00111 1246777777766555443 4555433
No 462
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.67 E-value=0.017 Score=54.54 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=24.2
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
+...+++.||+|+||||+.++++..+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 3456889999999999999999998764
No 463
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=94.63 E-value=0.25 Score=53.48 Aligned_cols=25 Identities=20% Similarity=0.113 Sum_probs=19.6
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l 223 (438)
..++|+.+|+|+|||+++-..+...
T Consensus 199 g~dvLV~ApTGSGKTlva~l~i~~~ 223 (1108)
T 3l9o_A 199 GESVLVSAHTSAGKTVVAEYAIAQS 223 (1108)
T ss_dssp TCCEEEECCSSSHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCChHHHHHHHHHHH
Confidence 4689999999999998876554433
No 464
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.58 E-value=0.02 Score=47.89 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.1
Q ss_pred ceEEecCCCCCHHHHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l~ 224 (438)
-.+|+||.|+|||++.++|.-.+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 567999999999999999987664
No 465
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.54 E-value=0.012 Score=48.92 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=23.6
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHHHc
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLYMV 226 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~~~ 226 (438)
..+.|.||+|+||||+++.|+..+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 357799999999999999999988753
No 466
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.50 E-value=0.017 Score=54.05 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.3
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l 223 (438)
+..-+.|+||||+|||++++.++..+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 44457899999999999999999865
No 467
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.46 E-value=0.016 Score=49.86 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=20.8
Q ss_pred CceEEecCCCCCHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRL 222 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~ 222 (438)
..+.+.||+|+||||+.++++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 45779999999999999999987
No 468
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=94.46 E-value=0.13 Score=50.79 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=19.9
Q ss_pred CceEEecCCCCCHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l 223 (438)
.++++.||+|+|||.++-.++...
T Consensus 129 ~~~ll~~~tGsGKT~~~~~~~~~~ 152 (510)
T 2oca_A 129 RRRILNLPTSAGRSLIQALLARYY 152 (510)
T ss_dssp SEEEEECCSTTTHHHHHHHHHHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHH
Confidence 468999999999999987666554
No 469
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.45 E-value=0.022 Score=56.99 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=24.9
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHHc
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYMV 226 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~~ 226 (438)
.+..++|.|+||+||||+|+.|++.+...
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~ 423 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQ 423 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhccc
Confidence 34568899999999999999999998753
No 470
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=94.44 E-value=0.33 Score=46.70 Aligned_cols=47 Identities=23% Similarity=0.458 Sum_probs=28.0
Q ss_pred cEEEEeCcccccCCCCCCCchhHHHHHHHHHhhcc---CCCEEEEEecCChhHHHHh
Q 013706 264 GILFVDEAYRLIPMQKADDKDYGIEALEEIMSVMD---GGKVVVIFAGYSEPMKRVI 317 (438)
Q Consensus 264 ~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~~~---~~~v~vi~~~~~~~~~~~~ 317 (438)
..|+|||+|.+.... + ...+..++..+. +.+++++.||-+..+..+.
T Consensus 205 ~~lVlDEah~~~~~g------f-~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~ 254 (434)
T 2db3_A 205 RFVVLDEADRMLDMG------F-SEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMA 254 (434)
T ss_dssp CEEEEETHHHHTSTT------T-HHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHH
T ss_pred CeEEEccHhhhhccC------c-HHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHH
Confidence 689999999987532 1 133455555542 2445566666666655443
No 471
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.40 E-value=0.02 Score=46.40 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=19.8
Q ss_pred CceEEecCCCCCHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGR 221 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~ 221 (438)
+.+++.|++|+|||++...+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999999976
No 472
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.39 E-value=0.022 Score=48.10 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.3
Q ss_pred CceEEecCCCCCHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRL 222 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~ 222 (438)
..+.|.||+|+|||++.+.++..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35789999999999999999863
No 473
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.38 E-value=0.021 Score=50.20 Aligned_cols=24 Identities=25% Similarity=0.577 Sum_probs=20.8
Q ss_pred CCCceEEecCCCCCHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGR 221 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~ 221 (438)
+...+.|.||+|+||||+.++|+.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 445678999999999999999975
No 474
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.37 E-value=0.021 Score=50.25 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=22.1
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l 223 (438)
+...+.|.||+|+||||+.++|+..+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44567899999999999999998754
No 475
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.36 E-value=0.026 Score=47.28 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=19.9
Q ss_pred CCceEEecCCCCCHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGR 221 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~ 221 (438)
...++|.|++|+|||+|...+..
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhc
Confidence 34699999999999999987765
No 476
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.35 E-value=0.17 Score=48.29 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=17.1
Q ss_pred CceEEecCCCCCHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGR 221 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~ 221 (438)
.++++.+|+|+|||.++-..+.
T Consensus 37 ~~~lv~apTGsGKT~~~l~~~~ 58 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMTAL 58 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHH
Confidence 5899999999999995444433
No 477
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.32 E-value=0.044 Score=47.30 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=22.8
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
.+.++|.|++|+|||+++..++..+.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 45789999999999999999988763
No 478
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.32 E-value=0.02 Score=49.86 Aligned_cols=24 Identities=29% Similarity=0.607 Sum_probs=20.5
Q ss_pred CCCceEEecCCCCCHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGR 221 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~ 221 (438)
+..-+.|.||+|+||||+.++++.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 344577999999999999999975
No 479
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.31 E-value=0.025 Score=49.83 Aligned_cols=24 Identities=21% Similarity=0.517 Sum_probs=20.9
Q ss_pred CceEEecCCCCCHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l 223 (438)
..+.+.||+|+||||+.++++..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 567799999999999999998643
No 480
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.29 E-value=0.016 Score=57.61 Aligned_cols=28 Identities=32% Similarity=0.409 Sum_probs=24.1
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLYM 225 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~~ 225 (438)
.+..+.|.|++|+||||++++|+..+..
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 3456889999999999999999998863
No 481
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.27 E-value=0.025 Score=48.09 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.4
Q ss_pred CceEEecCCCCCHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRL 222 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~ 222 (438)
..++|.||+|+|||++.+.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999863
No 482
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=94.24 E-value=0.18 Score=54.00 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=18.6
Q ss_pred CceEEecCCCCCHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l 223 (438)
.++++.+|+|+|||+++......+
T Consensus 55 ~~vlv~apTGsGKTlv~~~~i~~~ 78 (997)
T 4a4z_A 55 DSVFVAAHTSAGKTVVAEYAIAMA 78 (997)
T ss_dssp CEEEEECCTTSCSHHHHHHHHHHH
T ss_pred CCEEEEECCCCcHHHHHHHHHHHH
Confidence 589999999999998765544433
No 483
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.20 E-value=0.29 Score=52.37 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=19.2
Q ss_pred CceEEecCCCCCHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGR 221 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~ 221 (438)
.-++|.||.|+||||+.|.++-
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iGl 811 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAGL 811 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 4578999999999999999943
No 484
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.20 E-value=0.025 Score=47.18 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=19.1
Q ss_pred eEEecCCCCCHHHHHHHHHHH
Q 013706 202 MAFLGNPGTGKTMVARILGRL 222 (438)
Q Consensus 202 ~ll~GppGtGKT~la~~la~~ 222 (438)
++++|++|+|||++|+.++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999864
No 485
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.19 E-value=0.027 Score=50.64 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=21.0
Q ss_pred ceEEecCCCCCHHHHHHHHHHHH
Q 013706 201 HMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 201 ~~ll~GppGtGKT~la~~la~~l 223 (438)
++.+.||+|+||||+.++|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999866
No 486
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.14 E-value=0.026 Score=48.79 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=20.6
Q ss_pred CCCceEEecCCCCCHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGR 221 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~ 221 (438)
+..-+.|.||+|+||||+.++++.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 445678999999999999999975
No 487
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.12 E-value=0.036 Score=55.08 Aligned_cols=29 Identities=31% Similarity=0.411 Sum_probs=25.0
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcC
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVG 227 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~ 227 (438)
+..++|.|+||+|||++|+.+++.+...|
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G 400 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARG 400 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcC
Confidence 45688999999999999999999887644
No 488
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.10 E-value=0.18 Score=52.33 Aligned_cols=24 Identities=33% Similarity=0.526 Sum_probs=19.7
Q ss_pred CCCceEEecCCCCCHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGR 221 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~ 221 (438)
.+.++|+.||+|+|||.++-..+-
T Consensus 388 ~~~~~Ll~a~TGSGKTlvall~il 411 (780)
T 1gm5_A 388 KPMNRLLQGDVGSGKTVVAQLAIL 411 (780)
T ss_dssp SCCCCEEECCSSSSHHHHHHHHHH
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999988765544
No 489
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.09 E-value=0.028 Score=58.58 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=20.3
Q ss_pred CceEEecCCCCCHHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
+.+++.||||||||+++..+...+.
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l~ 396 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHLA 396 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4578999999999988777766654
No 490
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.08 E-value=0.026 Score=50.44 Aligned_cols=24 Identities=21% Similarity=0.441 Sum_probs=20.6
Q ss_pred CCCceEEecCCCCCHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGR 221 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~ 221 (438)
+..-+.|.||+|+||||+.++|+.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 445577999999999999999975
No 491
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.06 E-value=0.25 Score=51.06 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=21.1
Q ss_pred CceEEecCCCCCHHHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGRLL 223 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~~l 223 (438)
..+++.||.|+||||+.|.++...
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhhh
Confidence 347799999999999999999865
No 492
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.05 E-value=0.035 Score=45.87 Aligned_cols=24 Identities=29% Similarity=0.602 Sum_probs=21.4
Q ss_pred CCCceEEecCCCCCHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGR 221 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~ 221 (438)
....+++.|++|+|||++...+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 567899999999999999999865
No 493
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.04 E-value=0.068 Score=45.44 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=24.2
Q ss_pred eEEecCCCCCHHHHHHHHHHHHHHcCC
Q 013706 202 MAFLGNPGTGKTMVARILGRLLYMVGI 228 (438)
Q Consensus 202 ~ll~GppGtGKT~la~~la~~l~~~~~ 228 (438)
|.|.|+-|+||||.++.+++.|...|.
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~ 29 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGK 29 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 678999999999999999999987664
No 494
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=94.03 E-value=0.097 Score=55.98 Aligned_cols=46 Identities=22% Similarity=0.355 Sum_probs=31.7
Q ss_pred CCceEEecCCCCCHHHHHHHHHHHHHHcCCcCCCCEEEeecccccccc
Q 013706 199 PPHMAFLGNPGTGKTMVARILGRLLYMVGILPTDRVTEVQRTDLVGEF 246 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 246 (438)
..++||.+|+|+|||..|-.++..+...+. ..+.+.+-+..++.+|
T Consensus 170 ~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~--~~rvLIVvP~sLl~Qw 215 (968)
T 3dmq_A 170 APRVLLADEVGLGKTIEAGMILHQQLLSGA--AERVLIIVPETLQHQW 215 (968)
T ss_dssp SCEEEECCCTTSCHHHHHHHHHHHHHHTSS--CCCEEEECCTTTHHHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHHHhCC--CCeEEEEeCHHHHHHH
Confidence 568999999999999999888877654332 1234445555655544
No 495
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.03 E-value=0.025 Score=47.39 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=19.8
Q ss_pred CceEEecCCCCCHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGR 221 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~ 221 (438)
..+++.|+||+|||+|.+.++.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999999975
No 496
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.02 E-value=0.029 Score=46.03 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=19.7
Q ss_pred CceEEecCCCCCHHHHHHHHHH
Q 013706 200 PHMAFLGNPGTGKTMVARILGR 221 (438)
Q Consensus 200 ~~~ll~GppGtGKT~la~~la~ 221 (438)
..+++.|+||+|||++.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3588999999999999999975
No 497
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.98 E-value=0.034 Score=49.89 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=21.4
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRL 222 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~ 222 (438)
+..-+.|.||+|+||||+.+.|+..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4456789999999999999999863
No 498
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.97 E-value=0.031 Score=45.56 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.5
Q ss_pred CCceEEecCCCCCHHHHHHHHHH
Q 013706 199 PPHMAFLGNPGTGKTMVARILGR 221 (438)
Q Consensus 199 ~~~~ll~GppGtGKT~la~~la~ 221 (438)
...+++.|++|+|||++...+..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45789999999999999999876
No 499
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.94 E-value=0.029 Score=50.14 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=21.1
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRL 222 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~ 222 (438)
+..-+.|.||+|+||||+.++|+..
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 4456789999999999999999753
No 500
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.93 E-value=0.068 Score=46.23 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=23.0
Q ss_pred CCCceEEecCCCCCHHHHHHHHHHHHH
Q 013706 198 RPPHMAFLGNPGTGKTMVARILGRLLY 224 (438)
Q Consensus 198 ~~~~~ll~GppGtGKT~la~~la~~l~ 224 (438)
....+++.|++|+|||+++..++....
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 346788999999999999999988654
Done!