BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013708
(438 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WU9|A Chain A, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
pdb|2WU9|B Chain B, Crystal Structure Of Peroxisomal Kat2 From Arabidopsis
Thaliana
Length = 442
Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/419 (76%), Positives = 344/419 (82%), Gaps = 24/419 (5%)
Query: 42 YHRTSVYGDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIV 101
Y RTS+YGDDVVIVAA+RT LCKSKRG FKDTYPDDLLAPVL+A+IEKTN++PSEVGDIV
Sbjct: 22 YQRTSLYGDDVVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIV 81
Query: 102 V------------------------ETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGI 137
V ETV VRTVNRQCSSGLQ GFYDIGI
Sbjct: 82 VGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGI 141
Query: 138 GAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDS 197
GAGLESMT NPMAWEGSVNP VK F QAQNCLLPMGVTSENVA RFGV+R+EQDQAAVDS
Sbjct: 142 GAGLESMTTNPMAWEGSVNPAVKKFAQAQNCLLPMGVTSENVAQRFGVSRQEQDQAAVDS 201
Query: 198 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 257
HRK GKFKDEIIPV TK+VDPKTGDEKP+T+SVDDGIRP T+++ L KLKPVFK
Sbjct: 202 HRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDGIRPTTTLASLGKLKPVFK 261
Query: 258 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 317
KDGTTTAGNSSQVSDGAGAVLLMKRSVAM+KGLP+LGVFRTFAAVGVDPAIM
Sbjct: 262 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDPAIMGIGPAVAI 321
Query: 318 XXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 377
K+AGL+LDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGA+AIGHPLG TGAR
Sbjct: 322 PAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGAMAIGHPLGATGAR 381
Query: 378 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERGDCADELCNVRKVESNNFLSKD 436
CVATLLHEMKRRG+DCRFGV+SMCIGTGMGAAAVFERGD DEL N RKVE+ LSKD
Sbjct: 382 CVATLLHEMKRRGKDCRFGVVSMCIGTGMGAAAVFERGDGVDELRNARKVEAQGLLSKD 440
>pdb|2C7Y|A Chain A, Plant Enzyme
pdb|2C7Y|B Chain B, Plant Enzyme
pdb|2C7Z|A Chain A, Plant Enzyme Crystal Form Ii
Length = 404
Score = 632 bits (1630), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/399 (77%), Positives = 331/399 (82%), Gaps = 24/399 (6%)
Query: 42 YHRTSVYGDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIV 101
Y RTS+YGDDVVIVAA+RT LCKSKRG FKDTYPDDLLAPVL+A+IEKTN++PSEVGDIV
Sbjct: 5 YQRTSLYGDDVVIVAAHRTPLCKSKRGNFKDTYPDDLLAPVLRALIEKTNLNPSEVGDIV 64
Query: 102 V------------------------ETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGI 137
V ETV VRTVNRQCSSGLQ GFYDIGI
Sbjct: 65 VGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSGLQAVADVAAAIKAGFYDIGI 124
Query: 138 GAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDS 197
GAGLESMT NPMAWEGSVNP VK F QAQNCLLPMGVTSENVA RFGV+R+EQDQAAVDS
Sbjct: 125 GAGLESMTTNPMAWEGSVNPAVKKFAQAQNCLLPMGVTSENVAQRFGVSRQEQDQAAVDS 184
Query: 198 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 257
HRK GKFKDEIIPV TK+VDPKTGDEKP+T+SVDDGIRP T+++ L KLKPVFK
Sbjct: 185 HRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVDDGIRPTTTLASLGKLKPVFK 244
Query: 258 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 317
KDGTTTAGNSSQVSDGAGAVLLMKRSVAM+KGLP+LGVFRTFAAVGVDPAIM
Sbjct: 245 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFRTFAAVGVDPAIMGIGPAVAI 304
Query: 318 XXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 377
K+AGL+LDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGA+AIGHPLG TGAR
Sbjct: 305 PAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGAMAIGHPLGATGAR 364
Query: 378 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERGD 416
CVATLLHEMKRRG+DCRFGV+SMCIGTGMGAAAVFERGD
Sbjct: 365 CVATLLHEMKRRGKDCRFGVVSMCIGTGMGAAAVFERGD 403
>pdb|2WUA|A Chain A, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
pdb|2WUA|B Chain B, Structure Of The Peroxisomal 3-Ketoacyl-Coa Thiolase From
Sunflower
Length = 440
Score = 628 bits (1619), Expect = e-180, Method: Compositional matrix adjust.
Identities = 301/408 (73%), Positives = 333/408 (81%), Gaps = 24/408 (5%)
Query: 42 YHRTSVYGDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIV 101
Y R SV+GDDVVIVAAYR+ LCK+KRGG KDTYPDD+LAPVLKA+IEKTN++P+EVGDIV
Sbjct: 25 YQRNSVFGDDVVIVAAYRSPLCKAKRGGLKDTYPDDILAPVLKALIEKTNINPAEVGDIV 84
Query: 102 V------------------------ETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGI 137
V ETVPVRTVNRQCSSGLQ GFYDIGI
Sbjct: 85 VGSVLGAGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGI 144
Query: 138 GAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDS 197
GAGLESMT NPMAWEGSVNPKVK QAQ+CLLPMG+TSENVA +F +TR+EQDQAAV S
Sbjct: 145 GAGLESMTANPMAWEGSVNPKVKTMAQAQDCLLPMGITSENVAQKFSITRQEQDQAAVGS 204
Query: 198 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 257
HRK G+FKDEIIP+ TKIVDPKTGDEKPVTISVDDGIRP TS+++LAKLKPVF+
Sbjct: 205 HRKTAAATAAGRFKDEIIPIKTKIVDPKTGDEKPVTISVDDGIRPGTSLADLAKLKPVFR 264
Query: 258 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 317
KDG+TTAG SSQVSDGAGAVLLMKRS+A++KGLPILGVFRTFAAVGV P+IM
Sbjct: 265 KDGSTTAGTSSQVSDGAGAVLLMKRSIALQKGLPILGVFRTFAAVGVPPSIMGIGPAVAI 324
Query: 318 XXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 377
K+AGLQ+DDIDLFEINEAFASQFVYC+ KL +DP+KINVNGGA+AIGHPLG TGAR
Sbjct: 325 PAAVKAAGLQIDDIDLFEINEAFASQFVYCQKKLEIDPQKINVNGGAMAIGHPLGATGAR 384
Query: 378 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERGDCADELCNVR 425
CVATLLHEMKRRGRDCRFGV+SMCIGTGMGAAAVFERGD DELCN +
Sbjct: 385 CVATLLHEMKRRGRDCRFGVVSMCIGTGMGAAAVFERGDACDELCNAK 432
>pdb|2IIK|A Chain A, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
pdb|2IIK|B Chain B, Crystal Structure Of Human Peroxisomal Acetyl-Coa Acyl
Transferase 1 (Acaa1)
Length = 418
Score = 387 bits (993), Expect = e-108, Method: Compositional matrix adjust.
Identities = 200/386 (51%), Positives = 261/386 (67%), Gaps = 25/386 (6%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV-------- 102
DVV+V RTA+C++ RGGFKDT PD+LL+ V+ AV++ N+ P ++GDI V
Sbjct: 31 DVVVVHGRRTAICRAGRGGFKDTTPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPGA 90
Query: 103 ---------------ETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 147
ETVP+ TVNRQCSSGLQ G YDIG+ G+ESM++
Sbjct: 91 GAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSLA 150
Query: 148 PMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXX 207
G++ ++ E+A++CL+PMG+TSENVA RFG++R++QD A+ S +K
Sbjct: 151 DRGNPGNITSRLMEKEKARDCLIPMGITSENVAERFGISREKQDTFALASQQKAARAQSK 210
Query: 208 GKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNS 267
G F+ EI+PV T + D K G ++ +T++ D+GIRP+T++ LAKLKP FKKDG+TTAGNS
Sbjct: 211 GCFQAEIVPVTTTVHDDK-GTKRSITVTQDEGIRPSTTMEGLAKLKPAFKKDGSTTAGNS 269
Query: 268 SQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQ 327
SQVSDGA A+LL +RS A GLPILGV R++A VGV P IM + AGL
Sbjct: 270 SQVSDGAAAILLARRSKAEELGLPILGVLRSYAVVGVPPDIMGIGPAYAIPVALQKAGLT 329
Query: 328 LDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMK 387
+ D+D+FEINEAFASQ YC KL L PEK+N GGA+A+GHPLG TGAR V TLL+E+K
Sbjct: 330 VSDVDIFEINEAFASQAAYCVEKLRLPPEKVNPLGGAVALGHPLGCTGARQVITLLNELK 389
Query: 388 RRGRDCRFGVISMCIGTGMGAAAVFE 413
RRG+ +GV+SMCIGTGMGAAAVFE
Sbjct: 390 RRGKRA-YGVVSMCIGTGMGAAAVFE 414
>pdb|1AFW|A Chain A, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
pdb|1AFW|B Chain B, The 1.8 Angstrom Crystal Structure Of The Dimeric
Peroxisomal Thiolase Of Saccharomyces Cerevisiae
Length = 393
Score = 283 bits (723), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 169/396 (42%), Positives = 227/396 (57%), Gaps = 48/396 (12%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVI----EKTNVDPSEVGDIVVETV 105
+DVVIVAA R+A+ K +G FKD D LL L I E D + + ++ V
Sbjct: 10 EDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNV 69
Query: 106 -----------------------PVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLE 142
P +NRQCSSGL G DIG+ G+E
Sbjct: 70 LNVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVE 129
Query: 143 SMT-----VNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDS 197
SMT VNP+ S +++ +A+ CL+PMG+T+ENVA F ++RK+QD+ A +S
Sbjct: 130 SMTNNYKNVNPLGMISS--EELQKNREAKKCLIPMGITNENVAANFKISRKDQDEFAANS 187
Query: 198 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 257
++K G F+DEI+P+ K+ D D+G RPN + L+ ++P F
Sbjct: 188 YQKAYKAKNEGLFEDEILPI--KLPDGS-------ICQSDEGPRPNVTAESLSSIRPAFI 238
Query: 258 KD-GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXX 316
KD GTTTAGN+SQVSDG VLL +RSVA + LP+LG + F VGV P IM
Sbjct: 239 KDRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIMGVGPAYA 298
Query: 317 XXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 376
++ GLQ+ DID+FEINEAFA+Q +YC +KLG+D K+N GGA+A+GHPLG TGA
Sbjct: 299 IPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGAIALGHPLGCTGA 358
Query: 377 RCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVF 412
R VAT+L E+K+ + GV+SMCIGTGMGAAA+F
Sbjct: 359 RQVATILRELKKD----QIGVVSMCIGTGMGAAAIF 390
>pdb|1PXT|A Chain A, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
pdb|1PXT|B Chain B, The 2.8 Angstroms Structure Of Peroxisomal 3-Ketoacyl-Coa
Thiolase Of Saccharomyces Cerevisiae: A Five Layered
A-B-A- B-A Structure, Constructed From Two Core Domains
Of Identical Topology
Length = 390
Score = 282 bits (721), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 169/396 (42%), Positives = 227/396 (57%), Gaps = 48/396 (12%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVI----EKTNVDPSEVGDIVVETV 105
+DVVIVAA R+A+ K +G FKD D LL L I E D + + ++ V
Sbjct: 7 EDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNV 66
Query: 106 -----------------------PVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLE 142
P +NRQCSSGL G DIG+ G+E
Sbjct: 67 LNVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVE 126
Query: 143 SMT-----VNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDS 197
SMT VNP+ S +++ +A+ CL+PMG+T+ENVA F ++RK+QD+ A +S
Sbjct: 127 SMTNNYKNVNPLGMISS--EELQKNREAKKCLIPMGITNENVAANFKISRKDQDEFAANS 184
Query: 198 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 257
++K G F+DEI+P+ K+ D D+G RPN + L+ ++P F
Sbjct: 185 YQKAYKAKNEGLFEDEILPI--KLPDGSICQS-------DEGPRPNVTAESLSSIRPAFI 235
Query: 258 KD-GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXX 316
KD GTTTAGN+SQVSDG VLL +RSVA + LP+LG + F VGV P IM
Sbjct: 236 KDRGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIMGVGPAYA 295
Query: 317 XXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 376
++ GLQ+ DID+FEINEAFA+Q +YC +KLG+D K+N GGA+A+GHPLG TGA
Sbjct: 296 IPKVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGAIALGHPLGCTGA 355
Query: 377 RCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVF 412
R VAT+L E+K+ + GV+SMCIGTGMGAAA+F
Sbjct: 356 RQVATILRELKKD----QIGVVSMCIGTGMGAAAIF 387
>pdb|1DLU|A Chain A, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|B Chain B, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|C Chain C, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLU|D Chain D, Unliganded Biosynthetic Thiolase From Zoogloea Ramigera
pdb|1DLV|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
pdb|1DLV|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Coa
Length = 389
Score = 235 bits (600), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 148/395 (37%), Positives = 208/395 (52%), Gaps = 42/395 (10%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVETV------ 105
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++ V
Sbjct: 2 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 60
Query: 106 --PVRT---------------VNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNP 148
P R +N+ C SGL+ G I + G+ESM++ P
Sbjct: 61 QNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 120
Query: 149 MAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSH 198
K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 121 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 180
Query: 199 RKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK 258
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K
Sbjct: 181 NKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDK 234
Query: 259 DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXX 318
+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 235 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 294
Query: 319 XXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARC 378
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIGHP+G +GAR
Sbjct: 295 KALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARI 354
Query: 379 VATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 413
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 355 LNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 387
>pdb|2VU2|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate.
pdb|2VU2|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex With S-
Pantetheine-11-pivalate
Length = 392
Score = 235 bits (600), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 148/395 (37%), Positives = 208/395 (52%), Gaps = 42/395 (10%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVETV------ 105
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++ V
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 106 --PVRT---------------VNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNP 148
P R +N+ C SGL+ G I + G+ESM++ P
Sbjct: 64 QNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123
Query: 149 MAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSH 198
K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 199 RKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK 258
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K
Sbjct: 184 NKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDK 237
Query: 259 DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXX 318
+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 238 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 297
Query: 319 XXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARC 378
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIGHP+G +GAR
Sbjct: 298 KALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARI 357
Query: 379 VATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 413
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 358 LNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|1M1T|A Chain A, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|B Chain B, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|C Chain C, Biosynthetic Thiolase, Q64a Mutant
pdb|1M1T|D Chain D, Biosynthetic Thiolase, Q64a Mutant
Length = 392
Score = 235 bits (600), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 148/395 (37%), Positives = 208/395 (52%), Gaps = 42/395 (10%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVETV------ 105
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++ V
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 106 --PVRT---------------VNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNP 148
P R +N+ C SGL+ G I + G+ESM++ P
Sbjct: 64 ANPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123
Query: 149 MAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSH 198
K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 199 RKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK 258
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K
Sbjct: 184 NKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDK 237
Query: 259 DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXX 318
+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 238 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 297
Query: 319 XXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARC 378
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIGHP+G +GAR
Sbjct: 298 KALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARI 357
Query: 379 VATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 413
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 358 LNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2WKV|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A.
pdb|2WKV|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316d Mutant With Coenzyme A
Length = 392
Score = 233 bits (595), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 147/395 (37%), Positives = 208/395 (52%), Gaps = 42/395 (10%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVETV------ 105
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++ V
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 106 --PVRT---------------VNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNP 148
P R +N+ C SGL+ G I + G+ESM++ P
Sbjct: 64 QNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123
Query: 149 MAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSH 198
K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 199 RKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK 258
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K
Sbjct: 184 NKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDK 237
Query: 259 DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXX 318
+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 238 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 297
Query: 319 XXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARC 378
+ AG ++ D+DL E +EAFA+Q LG DP +NVNGGA+AIGHP+G +GAR
Sbjct: 298 KALERAGWKIGDLDLVEADEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARI 357
Query: 379 VATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 413
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 358 LNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2WKU|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant.
pdb|2WKU|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h Mutant
Length = 392
Score = 233 bits (595), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 147/395 (37%), Positives = 208/395 (52%), Gaps = 42/395 (10%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVETV------ 105
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++ V
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 106 --PVRT---------------VNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNP 148
P R +N+ C SGL+ G I + G+ESM++ P
Sbjct: 64 QNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123
Query: 149 MAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSH 198
K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 199 RKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK 258
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K
Sbjct: 184 NKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDK 237
Query: 259 DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXX 318
+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 238 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 297
Query: 319 XXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARC 378
+ AG ++ D+DL E +EAFA+Q LG DP +NVNGGA+AIGHP+G +GAR
Sbjct: 298 KALERAGWKIGDLDLVEAHEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARI 357
Query: 379 VATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 413
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 358 LNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2WL5|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 232 bits (592), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 147/395 (37%), Positives = 208/395 (52%), Gaps = 42/395 (10%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVETV------ 105
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++ V
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 106 --PVRT---------------VNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNP 148
P R +N+ C SGL+ G I + G+ESM++ P
Sbjct: 64 QNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123
Query: 149 MAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSH 198
K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 199 RKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK 258
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K
Sbjct: 184 NKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDK 237
Query: 259 DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXX 318
+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 238 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 297
Query: 319 XXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARC 378
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIG+P+G +GAR
Sbjct: 298 KALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGNPIGASGARI 357
Query: 379 VATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 413
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 358 LNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|1M1O|A Chain A, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|B Chain B, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|C Chain C, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M1O|D Chain D, Crystal Structure Of Biosynthetic Thiolase, C89a Mutant,
Complexed With Acetoacetyl-Coa
pdb|1M3K|A Chain A, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|B Chain B, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|C Chain C, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3K|D Chain D, Biosynthetic Thiolase, Inactive C89a Mutant
pdb|1M3Z|A Chain A, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|B Chain B, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|C Chain C, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|1M3Z|D Chain D, Biosynthetic Thiolase, C89a Mutant, Complexed With Acetyl
Coenzyme A
pdb|2VTZ|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A.
pdb|2VTZ|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
C89a Mutant With Coenzyme A
Length = 392
Score = 231 bits (590), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 147/395 (37%), Positives = 207/395 (52%), Gaps = 42/395 (10%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVETV------ 105
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++ V
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 106 --PVRT---------------VNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNP 148
P R +N+ SGL+ G I + G+ESM++ P
Sbjct: 64 QNPARQAAMKAGVPQEATAWGMNQLAGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123
Query: 149 MAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSH 198
K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 199 RKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK 258
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K
Sbjct: 184 NKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDK 237
Query: 259 DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXX 318
+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 238 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 297
Query: 319 XXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARC 378
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIGHP+G +GAR
Sbjct: 298 KALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARI 357
Query: 379 VATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 413
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 358 LNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2WL4|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 231 bits (589), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 147/395 (37%), Positives = 207/395 (52%), Gaps = 42/395 (10%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVETV------ 105
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++ V
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 106 --PVRT---------------VNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNP 148
P R +N+ C SGL+ G I + G+ESM++ P
Sbjct: 64 QNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123
Query: 149 MAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSH 198
K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 199 RKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK 258
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K
Sbjct: 184 NKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDK 237
Query: 259 DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXX 318
+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 238 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 297
Query: 319 XXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARC 378
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIG P+G +GAR
Sbjct: 298 KALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGARI 357
Query: 379 VATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 413
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 358 LNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|1QFL|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1QFL|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With A Reaction Intermediate.
pdb|1DM3|A Chain A, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|B Chain B, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|C Chain C, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
pdb|1DM3|D Chain D, Acetylated Biosynthetic Thiolase From Zoogloea Ramigera In
Complex With Acetyl-Coa
Length = 389
Score = 231 bits (589), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 147/395 (37%), Positives = 207/395 (52%), Gaps = 42/395 (10%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVETV------ 105
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++ V
Sbjct: 2 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 60
Query: 106 --PVRT---------------VNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNP 148
P R +N+ SGL+ G I + G+ESM++ P
Sbjct: 61 QNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 120
Query: 149 MAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSH 198
K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 121 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 180
Query: 199 RKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK 258
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K
Sbjct: 181 NKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDK 234
Query: 259 DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXX 318
+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 235 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 294
Query: 319 XXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARC 378
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIGHP+G +GAR
Sbjct: 295 KALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARI 354
Query: 379 VATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 413
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 355 LNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 387
>pdb|1M4S|A Chain A, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|B Chain B, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|C Chain C, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4S|D Chain D, Biosynthetic Thiolase, Cys89 Acetylated, Unliganded Form
pdb|1M4T|A Chain A, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|B Chain B, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|C Chain C, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1M4T|D Chain D, Biosynthetic Thiolase, Cys89 Butyrylated
pdb|1NL7|A Chain A, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|B Chain B, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|C Chain C, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1NL7|D Chain D, Z. Ramigera Biosynthetic Thiolase, Acetylated Enzyme
Complexed With Coa At Ph 9.5
pdb|1OU6|A Chain A, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|B Chain B, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|C Chain C, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|1OU6|D Chain D, Biosynthetic Thiolase From Zoogloea Ramigera In Complex
With Acetyl-O- Pantetheine-11-Pivalate
pdb|2VU0|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU0|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
Oxidised Enzyme With Coenzyme A.
pdb|2VU1|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate.
pdb|2VU1|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of With O-
Pantheteine-11-Pivalate
Length = 392
Score = 231 bits (589), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 147/395 (37%), Positives = 207/395 (52%), Gaps = 42/395 (10%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVETV------ 105
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++ V
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 106 --PVRT---------------VNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNP 148
P R +N+ SGL+ G I + G+ESM++ P
Sbjct: 64 QNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123
Query: 149 MAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSH 198
K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 199 RKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK 258
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K
Sbjct: 184 NKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDK 237
Query: 259 DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXX 318
+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 238 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 297
Query: 319 XXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARC 378
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIGHP+G +GAR
Sbjct: 298 KALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARI 357
Query: 379 VATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 413
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 358 LNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|1ULQ|A Chain A, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|B Chain B, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|C Chain C, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|D Chain D, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|E Chain E, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|F Chain F, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|G Chain G, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
pdb|1ULQ|H Chain H, Crystal Structure Of Tt0182 From Thermus Thermophilus Hb8
Length = 401
Score = 230 bits (587), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 150/410 (36%), Positives = 212/410 (51%), Gaps = 61/410 (14%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDI---------- 100
+ IV A RT + K G PDDLLA L +++++ V EV D+
Sbjct: 3 EAWIVEAVRTPIGKHG-GALASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGE 61
Query: 101 ----------VVETVPVR----TVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTV 146
++ PV TVNR C SGL+ G + IG+G+ESM+
Sbjct: 62 DNRNVARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSR 121
Query: 147 NPMA---------------------WEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGV 185
P A W VNPK++A ++ MG T+EN+A +G+
Sbjct: 122 APYAVPKPERGFPTGNLVMYDTTLGWR-FVNPKMQALYGTES----MGETAENLAEMYGI 176
Query: 186 TRKEQDQAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTS 245
R+EQD+ A+ SH+K G+F+DE++PV K G E+ + + D+G R +TS
Sbjct: 177 RREEQDRFALLSHQKAVRAWEEGRFQDEVVPVPVK-----RGKEE-ILVEQDEGPRRDTS 230
Query: 246 VSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD 305
+ +LA L+PVF++ GT TAGNSS ++DGA AVLL+ A GL L R A GV
Sbjct: 231 LEKLAALRPVFREGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRPLARVRAIAVAGVP 290
Query: 306 PAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQ--FVYCRNKLGLDPEKINVNGG 363
P IM + AGL D+ L E+NEAFA+Q V L ++ +++N NGG
Sbjct: 291 PRIMGIGPVPATRKALERAGLSFSDLGLIELNEAFAAQALAVLREWSLSMEDQRLNPNGG 350
Query: 364 ALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 413
A+A+GHPLG +GAR + TL+HEM+R R +FG+ +MCIG G G A V E
Sbjct: 351 AIALGHPLGASGARILTTLVHEMRR--RKVQFGLATMCIGVGQGIAVVVE 398
>pdb|2WL6|A Chain A, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|B Chain B, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|C Chain C, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant.
pdb|2WL6|D Chain D, Biosynthetic Thiolase From Z. Ramigera. The N316h-H348n
Mutant
Length = 392
Score = 230 bits (587), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 146/395 (36%), Positives = 208/395 (52%), Gaps = 42/395 (10%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVETV------ 105
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++ V
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 106 --PVRT---------------VNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNP 148
P R +N+ C SGL+ G I + G+ESM++ P
Sbjct: 64 QNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123
Query: 149 MAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSH 198
K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 199 RKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK 258
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K
Sbjct: 184 NKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDK 237
Query: 259 DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXX 318
+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 238 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 297
Query: 319 XXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARC 378
+ AG ++ D+DL E +EAFA+Q LG DP +NVNGGA+AIG+P+G +GAR
Sbjct: 298 KALERAGWKIGDLDLVEAHEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGNPIGASGARI 357
Query: 379 VATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 413
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 358 LNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2WL5|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A.
pdb|2WL5|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348n Mutant With Coenzyme A
Length = 392
Score = 228 bits (580), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 146/395 (36%), Positives = 207/395 (52%), Gaps = 42/395 (10%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVETV------ 105
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++ V
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 106 --PVRT---------------VNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNP 148
P R +N+ SGL+ G I + G+ESM++ P
Sbjct: 64 QNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123
Query: 149 MAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSH 198
K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 199 RKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK 258
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K
Sbjct: 184 NKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDK 237
Query: 259 DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXX 318
+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 238 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 297
Query: 319 XXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARC 378
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIG+P+G +GAR
Sbjct: 298 KALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGNPIGASGARI 357
Query: 379 VATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 413
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 358 LNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2WL4|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 227 bits (579), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 146/395 (36%), Positives = 206/395 (52%), Gaps = 42/395 (10%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVETV------ 105
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++ V
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 106 --PVRT---------------VNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNP 148
P R +N+ SGL+ G I + G+ESM++ P
Sbjct: 64 QNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123
Query: 149 MAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSH 198
K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 199 RKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK 258
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K
Sbjct: 184 NKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDK 237
Query: 259 DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXX 318
+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 238 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 297
Query: 319 XXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARC 378
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIG P+G +GAR
Sbjct: 298 KALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGARI 357
Query: 379 VATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 413
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 358 LNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|2WL4|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 227 bits (579), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 146/395 (36%), Positives = 206/395 (52%), Gaps = 42/395 (10%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVETV------ 105
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++ V
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 106 --PVRT---------------VNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNP 148
P R +N+ C SGL+ G I + G+ESM++ P
Sbjct: 64 QNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123
Query: 149 MAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSH 198
K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 199 RKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK 258
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K
Sbjct: 184 NKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDK 237
Query: 259 DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXX 318
+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 238 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 297
Query: 319 XXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARC 378
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIG P+G +GAR
Sbjct: 298 KALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGARI 357
Query: 379 VATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 413
+ TLL EMKRRG R G+ ++ IG GMG A E
Sbjct: 358 LNTLLFEMKRRG--ARKGLATLXIGGGMGVAMCIE 390
>pdb|2WL4|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
H348a Mutant With Coenzyme A
Length = 392
Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 145/395 (36%), Positives = 205/395 (51%), Gaps = 42/395 (10%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVETV------ 105
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++ V
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 106 --PVRT---------------VNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNP 148
P R +N+ SGL+ G I + G+ESM++ P
Sbjct: 64 QNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123
Query: 149 MAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSH 198
K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 199 RKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK 258
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K
Sbjct: 184 NKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDK 237
Query: 259 DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXX 318
+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 238 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 297
Query: 319 XXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARC 378
+ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AIG P+G +GAR
Sbjct: 298 KALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGAPIGASGARI 357
Query: 379 VATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 413
+ TLL EMKRRG R G+ ++ IG GMG A E
Sbjct: 358 LNTLLFEMKRRG--ARKGLATLXIGGGMGVAMCIE 390
>pdb|4DD5|A Chain A, Biosynthetic Thiolase (Thla1) From Clostridium Difficile
Length = 396
Score = 222 bits (566), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 138/398 (34%), Positives = 208/398 (52%), Gaps = 43/398 (10%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVETV----- 105
+VVI +A RTA+ S G FK +L K I++ N+ P + + ++ V
Sbjct: 8 EVVIASAARTAVG-SFGGAFKSVSAVELGVTAAKEAIKRANITPDMIDESLLGGVLTAGL 66
Query: 106 ------------------PVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 147
P T+N C SGL+ G DI + G E+M+++
Sbjct: 67 GQNIARQIALGAGIPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMSMS 126
Query: 148 P-----------MAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVD 196
P M V+ +K MG+T+EN+A ++ +TR+EQD+ A+
Sbjct: 127 PYLVPSARYGARMGDAAFVDSMIKDGLSDIFNNYHMGITAENIAEQWNITREEQDELALA 186
Query: 197 SHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 256
S K GKF +EI+PV ++ + GD + D+ I+P T++ +LAKL+P F
Sbjct: 187 SQNKAEKAQAEGKFDEEIVPV---VIKGRKGD---TVVDKDEYIKPGTTMEKLAKLRPAF 240
Query: 257 KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXX 316
KKDGT TAGN+S ++DGA +++M + A G+ L ++ GVDP IM
Sbjct: 241 KKDGTVTAGNASGINDGAAMLVVMAKEKAEELGIEPLATIVSYGTAGVDPKIMGYGPVPA 300
Query: 317 XXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 376
++A + ++DIDL E NEAFA+Q V L +D K+NVNGGA+AIGHP+G +GA
Sbjct: 301 TKKALEAANMTIEDIDLVEANEAFAAQSVAVIRDLNIDMNKVNVNGGAIAIGHPIGCSGA 360
Query: 377 RCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
R + TLL+EMKR RD + G+ ++CIG GMG + +R
Sbjct: 361 RILTTLLYEMKR--RDAKTGLATLCIGGGMGTTLIVKR 396
>pdb|3SS6|A Chain A, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
pdb|3SS6|B Chain B, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
Length = 394
Score = 220 bits (561), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/396 (33%), Positives = 203/396 (51%), Gaps = 42/396 (10%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV-------- 102
+VVI AA R+ + + G K+ P +L PVL+ +++ V+P EV ++++
Sbjct: 6 NVVITAAVRSPIG-TFGGALKNVTPVELAVPVLQEAVKRGGVEPHEVDEVILGHCIQRTD 64
Query: 103 ---------------ETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVN 147
+TV T+ RQ SSG+Q G ++ + G+E+M+ +
Sbjct: 65 EANTARTAALAAGFPDTVTGYTIQRQXSSGMQAIMSAAMQIQLGVSEVVVAGGVEAMSSS 124
Query: 148 PMA-----W-----EGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDS 197
P A W G + V + + MG T+EN+ ++ +TR+EQD+ A+ S
Sbjct: 125 PYALKQHRWGQRLQHGEIRDTVWEVLEDPIHHIMMGETAENLVEQYEITREEQDEVALRS 184
Query: 198 HRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK 257
H G F D+I+P+ K K V S D+ R + + +LA LKP F+
Sbjct: 185 HTLALKAIESGYFDDQIVPITIK------ERRKEVVFSKDEHPRADITAEKLAGLKPAFR 238
Query: 258 KDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXX 317
KDG+ TAGN+S ++DG+ ++LM A KGL L ++ GVDP IM
Sbjct: 239 KDGSVTAGNASGLNDGSAVLVLMSEEKAKEKGLQPLARIVGYSVAGVDPKIMGIGPAPAI 298
Query: 318 XXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGAR 377
+ L+D DL EINEAFA+Q++ +L LD EK+NVNG + +GHP+G TGAR
Sbjct: 299 RKGLEKVDWSLEDADLLEINEAFAAQYLAVEKELDLDREKVNVNGSGVGLGHPIGCTGAR 358
Query: 378 CVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 413
+L+HE+KRRG + G+ S+C+G G+G A E
Sbjct: 359 ITVSLIHELKRRGLEK--GIASLCVGGGIGVALFIE 392
>pdb|2WKT|C Chain C, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 220 bits (561), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 147/395 (37%), Positives = 207/395 (52%), Gaps = 42/395 (10%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVETV------ 105
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++ V
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 106 --PVRT---------------VNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNP 148
P R +N+ C SGL+ G I + G+ESM++ P
Sbjct: 64 QNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123
Query: 149 MAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSH 198
K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 199 RKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK 258
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K
Sbjct: 184 NKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDK 237
Query: 259 DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXX 318
+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 238 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 297
Query: 319 XXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARC 378
+ AG ++ D+DL E EAFA+Q LG DP +NVNGGA+AIGHP+G +GAR
Sbjct: 298 KALERAGWKIGDLDLVEAAEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARI 357
Query: 379 VATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 413
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 358 LNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|4E1L|A Chain A, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|B Chain B, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|C Chain C, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
pdb|4E1L|D Chain D, Crystal Structure Of Acetoacetyl-Coa Thiolase (Thla2) From
Clostridium Difficile
Length = 395
Score = 218 bits (556), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 141/403 (34%), Positives = 212/403 (52%), Gaps = 52/403 (12%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV-------- 102
DVVIV+A RT + S G FK+T L +K I + ++ SE+ ++++
Sbjct: 6 DVVIVSAVRTPIG-SFGGVFKNTSAVQLGTIAVKEAISRVGLNLSEIDEVIIGNVLQTGL 64
Query: 103 ---------------ETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMT-- 145
+VP TVN+ C SGL+ G D+ I G E+M+
Sbjct: 65 GQNVARQIAINAGIPNSVPSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMSQA 124
Query: 146 --VNPMAWEGS------------VNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQD 191
+ P A GS + + AF Q MG+T+EN+A +F TR+ QD
Sbjct: 125 PYIVPTARFGSKMGNITMVDSMLTDGLIDAFNQYH-----MGITAENIATKFEFTREMQD 179
Query: 192 QAAVDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAK 251
+ A++S K +FK+EI+PV I + G K TI D+ + + L+K
Sbjct: 180 KLALESQNKAENAIKNNRFKEEIVPVDVLI---RRG--KIETIDKDEYPKLGMTFEGLSK 234
Query: 252 LKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXX 311
LKP FKKDGT TAGN+S ++DGA ++LM + A G+ L +++A+ GV+P +M
Sbjct: 235 LKPAFKKDGTVTAGNASGINDGAAMLILMSQQKADELGIRPLAKIKSYASAGVEPEVMGT 294
Query: 312 XXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPL 371
K AGL ++DIDL E NEAFA+Q + +N+L +D K+NVNGGA+A+GHP+
Sbjct: 295 GPIPATRKALKKAGLSINDIDLIEANEAFAAQALAVKNELQIDSSKLNVNGGAIALGHPI 354
Query: 372 GTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
G +GAR + TL++EM++ R G+ ++CIG G G + V R
Sbjct: 355 GASGARILVTLIYEMQK--RKVETGLATLCIGGGQGISMVVSR 395
>pdb|2WKT|A Chain A, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|B Chain B, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A.
pdb|2WKT|D Chain D, Biosynthetic Thiolase From Z. Ramigera. Complex Of The
N316a Mutant With Coenzyme A
Length = 392
Score = 216 bits (550), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 146/395 (36%), Positives = 206/395 (52%), Gaps = 42/395 (10%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVETV------ 105
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++ V
Sbjct: 5 IVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAGEG 63
Query: 106 --PVRT---------------VNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNP 148
P R +N+ SGL+ G I + G+ESM++ P
Sbjct: 64 QNPARQAAMKAGVPQEATAWGMNQLXGSGLRAVALGMQQIATGDASIIVAGGMESMSMAP 123
Query: 149 MAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVDSH 198
K+ F+ + MG T+ENVA ++ ++R EQD AV S
Sbjct: 124 HCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVASQ 183
Query: 199 RKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK 258
K G+FKDEI+P IV + GD +T+ D+ IR ++ +AKL+P F K
Sbjct: 184 NKAEAAQKDGRFKDEIVPF---IVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAFDK 237
Query: 259 DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXX 318
+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP +M
Sbjct: 238 EGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPKVMGTGPIPASR 297
Query: 319 XXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARC 378
+ AG ++ D+DL E EAFA+Q LG DP +NVNGGA+AIGHP+G +GAR
Sbjct: 298 KALERAGWKIGDLDLVEAAEAFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARI 357
Query: 379 VATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 413
+ TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 358 LNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCIE 390
>pdb|1WDK|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|C Chain C, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|D Chain D, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 390
Score = 216 bits (549), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 146/395 (36%), Positives = 203/395 (51%), Gaps = 42/395 (10%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEK-TNVDPSEVGDIVV------- 102
DVVIV RT + +SK G ++T +D+ A ++ V+E+ + VDP EV D++
Sbjct: 6 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQTL 65
Query: 103 -----------------ETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMT 145
T +TV+R C S + G D+ + G+E M
Sbjct: 66 EQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMG 125
Query: 146 VNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXX 205
M NP + + + + MG+T+E + G++R++QD AV SH+
Sbjct: 126 HVSMMHGVDPNPHMSLYAAKASGM--MGLTAEMLGKMHGISREQQDAFAVRSHQLAHKAT 183
Query: 206 XXGKFKDEIIPVATKIVDPKTGDEKPV--TISVDDGIRPNTSVSELAKLKPVFK-KDGTT 262
GKFKDEIIP+ + DE D+ IRP+T++ LA LKP F K GT
Sbjct: 184 VEGKFKDEIIPM-------QGYDENGFLKIFDYDETIRPDTTLESLAALKPAFNPKGGTV 236
Query: 263 TAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXK 322
TAG SSQ++DGA +++M A GL L V R+ A GVDPAIM K
Sbjct: 237 TAGTSSQITDGASCMIVMSAQRAKDLGLEPLAVIRSMAVAGVDPAIMGYGPVPATQKALK 296
Query: 323 SAGLQLDDIDLFEINEAFASQFVYCRNKLG-LDP--EKINVNGGALAIGHPLGTTGARCV 379
AGL + DID E+NEAFA+Q + L LD EK+N++GGA+A+GHP G +GAR
Sbjct: 297 RAGLNMADIDFIELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARIS 356
Query: 380 ATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
TLL+ MK+ G FG+ +MCIG G G A VFER
Sbjct: 357 GTLLNVMKQNG--GTFGLSTMCIGLGQGIATVFER 389
>pdb|1WL4|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase Complexed With
Coa
pdb|1WL5|A Chain A, Human Cytosolic Acetoacetyl-Coa Thiolase
Length = 397
Score = 201 bits (510), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 134/402 (33%), Positives = 203/402 (50%), Gaps = 48/402 (11%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV------- 102
D VVIV+A RT + S G DL + V+K V+++ V P +V +++
Sbjct: 6 DPVVIVSAART-IIGSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHVLAAG 64
Query: 103 ----------------ETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTV 146
+VP + SGL+ G I + G+E+M+
Sbjct: 65 CGQNPVRQASVGAGIPYSVPAWSCQMIXGSGLKAVCLAVQSIGIGDSSIVVAGGMENMSK 124
Query: 147 NPMAWEGSVNPKVKAF------------EQAQNCLLPMGVTSENVAHRFGVTRKEQDQAA 194
P K+ + NC MG+T+ENVA ++ V+R++QD+ A
Sbjct: 125 APHLAYLRTGVKIGEMPLTDSILCDGLTDAFHNC--HMGITAENVAKKWQVSREDQDKVA 182
Query: 195 VDSHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKP 254
V S + G F EI+PV +V + G + + D+ R +++ ++KLKP
Sbjct: 183 VLSQNRTENAQKAGHFDKEIVPV---LVSTRKG---LIEVKTDEFPRHGSNIEAMSKLKP 236
Query: 255 VFKKDGT--TTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXX 312
F DGT T N+S ++DGA AV+LMK+S A ++GL L +++ VGV+P+IM
Sbjct: 237 YFLTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGVEPSIMGIG 296
Query: 313 XXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLG 372
AG L+D+D+FEINEAFA+ +LGL+PEK+N+ GGA+A+GHPLG
Sbjct: 297 PIPAIKQAVTKAGWSLEDVDIFEINEAFAAVSAAIVKELGLNPEKVNIEGGAIALGHPLG 356
Query: 373 TTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
+G R + TLLH ++R GR GV ++CIG GMG A +R
Sbjct: 357 ASGCRILVTLLHTLERMGRS--RGVAALCIGGGMGIAMCVQR 396
>pdb|3GOA|A Chain A, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
pdb|3GOA|B Chain B, Crystal Structure Of The Salmonella Typhimurium Fada 3-
Ketoacyl-Coa Thiolase
Length = 387
Score = 195 bits (495), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 139/394 (35%), Positives = 193/394 (48%), Gaps = 38/394 (9%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKT-NVDPSEVGDI-------- 100
+ VVIV A RT +SK G F++ +DL A + ++++ + ++ + + DI
Sbjct: 2 EQVVIVDAIRTPXGRSKGGAFRNVRAEDLSAHLXRSLLARNPSLTAATLDDIYWGCVQQT 61
Query: 101 ----------------VVETVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESM 144
+ +VP TVNR C S Q G + + G+E
Sbjct: 62 LEQGFNIARNAALLAEIPHSVPAVTVNRLCGSSXQALHDAARXIXTGDAQVCLVGGVEHX 121
Query: 145 TVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXX 204
P + +P + G+T+E ++ G++R+ QDQ A SH +
Sbjct: 122 GHVPXSHGVDFHPGLS--RNVAKAAGXXGLTAEXLSRLHGISREXQDQFAARSHARAWAA 179
Query: 205 XXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK-DGTTT 263
G FK EIIP D G K + D+ IRP T+V L+ L+P F GT T
Sbjct: 180 TQSGAFKTEIIPTGGHDAD---GVLK--QFNYDEVIRPETTVEALSTLRPAFDPVSGTVT 234
Query: 264 AGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKS 323
AG SS +SDGA A L+ S A GL R+ A VG DP+I K
Sbjct: 235 AGTSSALSDGAAAXLVXSESRARELGLKPRARIRSXAVVGCDPSIXGYGPVPASKLALKK 294
Query: 324 AGLQLDDIDLFEINEAFASQFVYCRNKLGLDP---EKINVNGGALAIGHPLGTTGARCVA 380
AGL DID+FE NEAFA+Q + C LGL EKIN+NGGA+A+GHPLG +GAR
Sbjct: 295 AGLSASDIDVFEXNEAFAAQILPCIKDLGLXEQIDEKINLNGGAIALGHPLGCSGARIST 354
Query: 381 TLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
TL++ +R +D +FG+ + CIG G G A VFER
Sbjct: 355 TLINLXER--KDAQFGLATXCIGLGQGIATVFER 386
>pdb|3SVK|A Chain A, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
pdb|3SVK|B Chain B, Crystal Structure Of Acetyl-Coa Acetyltransferase From
Mycobacterium Avium
Length = 407
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 124/414 (29%), Positives = 193/414 (46%), Gaps = 63/414 (15%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEK-TNVDPSEVGDIVVETV-PV 107
++ I A RT K K G + P +L+ ++ + + ++D + + D+++ V PV
Sbjct: 7 EEAFIYEAIRTPRGKQKNGSLTEVKPLNLVVGLVDELRRRYPDLDETLISDMILGVVSPV 66
Query: 108 --------RT---------------VNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESM 144
RT +NR C+SGL+ G+ D+ + G+ESM
Sbjct: 67 GDQGGDIARTAVLAAGLPETTGGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGVESM 126
Query: 145 TVNPMAWEG---SVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKX 201
+ PM +G + +P+ + +P G+ ++ +A G +R++ D A+ S +K
Sbjct: 127 SRVPMGSDGGAWATDPET----NYRIGFVPQGIGADLIATLEGFSREDVDAYALRSQQKA 182
Query: 202 XXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF----- 256
G F ++PV + V + D+ +RP+T++ LAKLK F
Sbjct: 183 AAAWSGGYFAKSVVPVRDQ--------NGLVILDHDEHMRPDTTMEGLAKLKTAFDGVGE 234
Query: 257 ----------------KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFA 300
K + T GNSS + DGA VL+ +GL A
Sbjct: 235 MGGFDDVALQKYHWVEKINHVHTGGNSSGIVDGAALVLVGSEKAGKSQGLTPRARIVATA 294
Query: 301 AVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINV 360
G DP IM AGL +DDIDLFE+NEAFAS + + L + EK+NV
Sbjct: 295 TSGSDPVIMLTGPTPATRKVLDRAGLTIDDIDLFELNEAFASVVLKFQKDLNIPDEKLNV 354
Query: 361 NGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
NGGA+A+GHPLG TGA T++ E++R R+ R +I++CIG GMG A + ER
Sbjct: 355 NGGAIAMGHPLGATGAMITGTMVDELER--RNARRALITLCIGGGMGVATIIER 406
>pdb|2IB7|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB7|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB8|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IB9|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 158 bits (399), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 158/321 (49%), Gaps = 20/321 (6%)
Query: 104 TVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPK----- 158
+ P T+N+ C+SG++ G D+ + G+ESM+ P P
Sbjct: 84 STPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSNVPYVMNRGSTPYGGVKL 143
Query: 159 ----VKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEI 214
VK + MG +EN A + + R EQD A++S+ + GKF +E+
Sbjct: 144 EDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYAINSYTRSKAAWEAGKFGNEV 203
Query: 215 IPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKD-GTTTAGNSSQVSDG 273
IPV + +P + +D S++ KLK VF+K+ GT TA N+S ++DG
Sbjct: 204 IPVTVTV------KGQPDVVVKEDEEYKRVDFSKVPKLKTVFQKENGTVTAANASTLNDG 257
Query: 274 AGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDL 333
A A++LM A R + L FA V+P K GL+ +DI +
Sbjct: 258 AAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVYAASMVLKDVGLKKEDIAM 317
Query: 334 FEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDC 393
+E+NEAF+ + L +DP+K+N+NGGA+++GHP+G +GAR V L H +K+
Sbjct: 318 WEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVGHLTHALKQG---- 373
Query: 394 RFGVISMCIGTGMGAAAVFER 414
+G+ S+C G G +A + ++
Sbjct: 374 EYGLASICNGGGGASAMLIQK 394
>pdb|2F2S|A Chain A, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|B Chain B, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|C Chain C, Human Mitochondrial Acetoacetyl-Coa Thiolase
pdb|2F2S|D Chain D, Human Mitochondrial Acetoacetyl-Coa Thiolase
Length = 406
Score = 155 bits (392), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 114/399 (28%), Positives = 182/399 (45%), Gaps = 44/399 (11%)
Query: 49 GDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVETV--- 105
G +VVIV+A RT + S G L + ++ IEK + EV + + V
Sbjct: 18 GSEVVIVSATRTPI-GSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQG 76
Query: 106 --------------------PVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMT 145
P T+N+ +SG++ G D+ + G+ESM+
Sbjct: 77 GEGQAPTRQAVLGAGLPISTPCTTINKVXASGMKAIMMASQSLMCGHQDVMVAGGMESMS 136
Query: 146 VNPMAWEGSVNPK---------VKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVD 196
P P VK + MG +EN A + + R EQD A++
Sbjct: 137 NVPYVMNRGSTPYGGVKLEDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYAIN 196
Query: 197 SHRKXXXXXXXGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 256
S+ + GKF +E+IPV + +P + +D S++ KLK VF
Sbjct: 197 SYTRSKAAWEAGKFGNEVIPVTVTV------KGQPDVVVKEDEEYKRVDFSKVPKLKTVF 250
Query: 257 KKD-GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXX 315
+K+ GT TA N+S ++DGA A++LM A R + L FA V+P
Sbjct: 251 QKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVY 310
Query: 316 XXXXXXKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 375
K GL+ +DI ++E+NEAF+ + L +DP+K+N+NGGA+++GHP+G +G
Sbjct: 311 AASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSG 370
Query: 376 ARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
AR V L H +K+ +G+ S+C G G +A + ++
Sbjct: 371 ARIVGHLTHALKQ----GEYGLASICNGGGGASAMLIQK 405
>pdb|2IBU|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBU|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-coa Thiolase (t2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBW|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|A Chain A, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|B Chain B, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|C Chain C, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
pdb|2IBY|D Chain D, Crystallographic And Kinetic Studies Of Human
Mitochondrial Acetoacetyl-Coa Thiolase (T2): The
Importance Of Potassium And Chloride For Its Structure
And Function
Length = 395
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 97/321 (30%), Positives = 157/321 (48%), Gaps = 20/321 (6%)
Query: 104 TVPVRTVNRQCSSGLQXXXXXXXXXXXGFYDIGIGAGLESMTVNPMAWEGSVNPK----- 158
+ P T+N+ +SG++ G D+ + G+ESM+ P P
Sbjct: 84 STPCTTINKVXASGMKAIMMASQSLMCGHQDVMVAGGMESMSNVPYVMNRGSTPYGGVKL 143
Query: 159 ----VKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKXXXXXXXGKFKDEI 214
VK + MG +EN A + + R EQD A++S+ + GKF +E+
Sbjct: 144 EDLIVKDGLTDVYNKIHMGSCAENTAKKLNIARNEQDAYAINSYTRSKAAWEAGKFGNEV 203
Query: 215 IPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKD-GTTTAGNSSQVSDG 273
IPV + +P + +D S++ KLK VF+K+ GT TA N+S ++DG
Sbjct: 204 IPVTVTV------KGQPDVVVKEDEEYKRVDFSKVPKLKTVFQKENGTVTAANASTLNDG 257
Query: 274 AGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMXXXXXXXXXXXXKSAGLQLDDIDL 333
A A++LM A R + L FA V+P K GL+ +DI +
Sbjct: 258 AAALVLMTADAAKRLNVTPLARIVAFADAAVEPIDFPIAPVYAASMVLKDVGLKKEDIAM 317
Query: 334 FEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDC 393
+E+NEAF+ + L +DP+K+N+NGGA+++GHP+G +GAR V L H +K+
Sbjct: 318 WEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHPIGMSGARIVGHLTHALKQ----G 373
Query: 394 RFGVISMCIGTGMGAAAVFER 414
+G+ S+C G G +A + ++
Sbjct: 374 EYGLASICNGGGGASAMLIQK 394
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 240 IRPNTSVS--ELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMR 287
++PNTSV L L P TAGN S+G AVLL K+S+A R
Sbjct: 194 LKPNTSVQFLRLGMLSPEGTCKAFDTAGNGYCRSEGVVAVLLTKKSLARR 243
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 262 TTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFR 297
+ A + +++GAG ++L + S A R+G P+L V R
Sbjct: 254 SKAADGFGLAEGAGVLVLQRLSAARREGRPVLAVLR 289
>pdb|2UV8|A Chain A, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|B Chain B, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|C Chain C, Crystal Structure Of Yeast Fatty Acid Synthase With Stalled
Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 1887
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 262 TTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD 305
TT N + GAG ++M+ +A++ G+PI G+ AA D
Sbjct: 1370 TTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIV-AMAATATD 1412
>pdb|2VKZ|A Chain A, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|B Chain B, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|C Chain C, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|A Chain A, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|B Chain B, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|C Chain C, Saccharomyces Cerevisiae Fas Type I
Length = 1887
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 262 TTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD 305
TT N + GAG ++M+ +A++ G+PI G+ AA D
Sbjct: 1370 TTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIV-AMAATATD 1412
>pdb|2PFF|A Chain A, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|D Chain D, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|G Chain G, Structural Insights Of Yeast Fatty Acid Synthase
Length = 1688
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 262 TTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD 305
TT N + GAG ++M+ +A++ G+PI G+ AA D
Sbjct: 1171 TTTRNGFMEAQGAGIQIIMQADLALKMGVPIYGIV-AMAATATD 1213
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,528,062
Number of Sequences: 62578
Number of extensions: 435747
Number of successful extensions: 1033
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 859
Number of HSP's gapped (non-prelim): 48
length of query: 438
length of database: 14,973,337
effective HSP length: 102
effective length of query: 336
effective length of database: 8,590,381
effective search space: 2886368016
effective search space used: 2886368016
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)