RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 013708
(438 letters)
>gnl|CDD|215161 PLN02287, PLN02287, 3-ketoacyl-CoA thiolase.
Length = 452
Score = 834 bits (2155), Expect = 0.0
Identities = 369/455 (81%), Positives = 406/455 (89%), Gaps = 28/455 (6%)
Query: 1 MEKAINRQQVLLEHLRPSNSSSHNYESILSASACAAGDSAAYHRTSVYGDDVVIVAAYRT 60
MEKAINRQ+VLL HLRPS+S S LSASACAAGDSAAYHRT+ +GDDVVIVAAYRT
Sbjct: 1 MEKAINRQRVLLRHLRPSSS----EPSSLSASACAAGDSAAYHRTTAFGDDVVIVAAYRT 56
Query: 61 ALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV------------------ 102
+CK+KRGGFKDTYPDDLLAPVLKAV+EKT ++PSEVGDIVV
Sbjct: 57 PICKAKRGGFKDTYPDDLLAPVLKAVVEKTGLNPSEVGDIVVGTVLAPGSQRANECRMAA 116
Query: 103 ------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGSVN 156
ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAG+ESMT NPMAWEG VN
Sbjct: 117 FYAGFPETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGVESMTTNPMAWEGGVN 176
Query: 157 PKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIP 216
P+V++F QAQ+CLLPMG+TSENVA RFGVTR+EQDQAAV+SHRKAAAATA+GKFKDEI+P
Sbjct: 177 PRVESFSQAQDCLLPMGITSENVAERFGVTREEQDQAAVESHRKAAAATASGKFKDEIVP 236
Query: 217 VATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGA 276
V TKIVDPKTG+EKP+ ISVDDGIRPNT++++LAKLKPVFKK+GTTTAGNSSQVSDGAGA
Sbjct: 237 VHTKIVDPKTGEEKPIVISVDDGIRPNTTLADLAKLKPVFKKNGTTTAGNSSQVSDGAGA 296
Query: 277 VLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEI 336
VLLMKRSVAM+KGLPILGVFR+FAAVGVDPA+MG+GPAVAIPAAVK+AGL+LDDIDLFEI
Sbjct: 297 VLLMKRSVAMQKGLPILGVFRSFAAVGVDPAVMGIGPAVAIPAAVKAAGLELDDIDLFEI 356
Query: 337 NEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFG 396
NEAFASQFVYC KLGLDPEK+NVNGGA+A+GHPLG TGARCVATLLHEMKRRG+DCRFG
Sbjct: 357 NEAFASQFVYCCKKLGLDPEKVNVNGGAIALGHPLGATGARCVATLLHEMKRRGKDCRFG 416
Query: 397 VISMCIGTGMGAAAVFERGDCADELCNVRKVESNN 431
V+SMCIGTGMGAAAVFERGD DEL N RKVE NN
Sbjct: 417 VVSMCIGTGMGAAAVFERGDSVDELSNARKVEGNN 451
>gnl|CDD|238383 cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze
the reversible thiolytic cleavage of 3-ketoacyl-CoA into
acyl-CoA and acetyl-CoA, a 2-step reaction involving a
covalent intermediate formed with a catalytic cysteine.
They are found in prokaryotes and eukaryotes (cytosol,
microbodies and mitochondria). There are 2 functional
different classes: thiolase-I (3-ketoacyl-CoA thiolase)
and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I
can cleave longer fatty acid molecules and plays an
important role in the beta-oxidative degradation of
fatty acids. Thiolase-II has a high substrate
specificity. Although it can cleave acetoacyl-CoA, its
main function is the synthesis of acetoacyl-CoA from two
molecules of acetyl-CoA, which gives it importance in
several biosynthetic pathways.
Length = 386
Score = 495 bits (1278), Expect = e-175
Identities = 192/395 (48%), Positives = 248/395 (62%), Gaps = 42/395 (10%)
Query: 53 VIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV---------- 102
VIV+A RT + + G KD DDL A V+KA++E+ +DP EV D+++
Sbjct: 1 VIVSAVRTPIGRFG-GALKDVSADDLGAAVIKALLERAGLDPEEVDDVIMGNVLQAGEGQ 59
Query: 103 -------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPM 149
E+VP TVNR C SGLQAVA A +I AG D+ + G+ESM+ P
Sbjct: 60 NPARQAALLAGLPESVPATTVNRVCGSGLQAVALAAQSIAAGEADVVVAGGVESMSRAPY 119
Query: 150 AWEGSVNPK----------VKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHR 199
+ + L MG+T+ENVA ++G++R+EQD+ A+ SH+
Sbjct: 120 LLPKARRGGRLGLNTLDGMLDDGLTDPFTGLSMGITAENVAEKYGISREEQDEFALRSHQ 179
Query: 200 KAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKD 259
+AAAA AG+FKDEI+PV G + PV + D+G RP+T++ +LAKLKP FKKD
Sbjct: 180 RAAAAQEAGRFKDEIVPVEVP------GRKGPVVVDRDEGPRPDTTLEKLAKLKPAFKKD 233
Query: 260 GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPA 319
GT TAGN+S ++DGA AVLLM A GL L +A GVDPAIMG+GP AIP
Sbjct: 234 GTVTAGNASGINDGAAAVLLMSEEKAKELGLKPLARIVGYAVAGVDPAIMGIGPVPAIPK 293
Query: 320 AVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCV 379
A+K AGL LDDIDL EINEAFA+Q + C +LGLDPEK+NVNGGA+A+GHPLG +GAR V
Sbjct: 294 ALKRAGLTLDDIDLIEINEAFAAQALACLKELGLDPEKVNVNGGAIALGHPLGASGARIV 353
Query: 380 ATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
TLLHE+KRRG R+G+ +MCIG G GAA V ER
Sbjct: 354 VTLLHELKRRG--GRYGLATMCIGGGQGAAMVIER 386
>gnl|CDD|233642 TIGR01930, AcCoA-C-Actrans, acetyl-CoA acetyltransferases. This
model represents a large family of enzymes which
catalyze the thiolysis of a linear fatty acid CoA (or
acetoacetyl-CoA) using a second CoA molecule to produce
acetyl-CoA and a CoA-ester product two carbons shorter
(or, alternatively, the condensation of two molecules of
acetyl-CoA to produce acetoacetyl-CoA and CoA). This
enzyme is also known as "thiolase", "3-ketoacyl-CoA
thiolase", "beta-ketothiolase" and "Fatty oxidation
complex beta subunit". When catalyzing the degradative
reaction on fatty acids the corresponding EC number is
2.3.1.16. The condensation reaction corresponds to
2.3.1.9. Note that the enzymes which catalyze the
condensation are generally not involved in fatty acid
biosynthesis, which is carried out by a decarboxylating
condensation of acetyl and malonyl esters of acyl
carrier proteins. Rather, this activity may produce
acetoacetyl-CoA for pathways such as IPP biosynthesis in
the absence of sufficient fatty acid oxidation [Fatty
acid and phospholipid metabolism, Other].
Length = 386
Score = 453 bits (1167), Expect = e-159
Identities = 182/395 (46%), Positives = 241/395 (61%), Gaps = 44/395 (11%)
Query: 54 IVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV----------- 102
IVAA RT + K G KD +DL A V+K ++E+ +DP + D++
Sbjct: 1 IVAAARTPIGKFG-GSLKDVSAEDLGAAVIKELLERNPLDPELIDDVIFGNVLQAGEQQN 59
Query: 103 ------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMA 150
E+VP TVNRQC+SGLQAV A I+AG D+ + G+ESM+ P +
Sbjct: 60 IARQAALLAGLPESVPAYTVNRQCASGLQAVILAAQLIRAGEADVVVAGGVESMSRVPYS 119
Query: 151 W----EGSVNPKVKAFEQAQNCL--------LPMGVTSENVAHRFGVTRKEQDQAAVDSH 198
V P E L MG+T+EN+A ++G++R+EQD+ A+ SH
Sbjct: 120 VPRSRRWGVKPGNAELEDQILKDGLDDPLNGLSMGLTAENLAKKYGISREEQDEYALRSH 179
Query: 199 RKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK 258
++AA A G FKDEI+PV + K PV +S D+GIRPNT++ +LAKLKP F
Sbjct: 180 QRAAKAWEEGLFKDEIVPV--SVKGRK----GPVVVSSDEGIRPNTTLEKLAKLKPAFDP 233
Query: 259 DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIP 318
+GT TAGNSS ++DGA A+LLM A GL L ++A GVDP IMG+GP AIP
Sbjct: 234 NGTVTAGNSSPLNDGAAALLLMSEEKAKELGLTPLARIVSYAVAGVDPEIMGLGPVPAIP 293
Query: 319 AAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARC 378
A+K AGL + DIDLFEINEAFA+Q + C +LGLD EK+NVNGGA+A+GHPLG +GAR
Sbjct: 294 KALKKAGLSISDIDLFEINEAFAAQVLACIKELGLDLEKVNVNGGAIALGHPLGASGARI 353
Query: 379 VATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 413
V TLLHE+KRRG R+G+ ++CIG G G A + E
Sbjct: 354 VTTLLHELKRRGG--RYGLATICIGGGQGIAVILE 386
>gnl|CDD|180261 PRK05790, PRK05790, putative acyltransferase; Provisional.
Length = 393
Score = 393 bits (1013), Expect = e-135
Identities = 177/408 (43%), Positives = 240/408 (58%), Gaps = 60/408 (14%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV------- 102
DVVIV+A RT + K G KD +L A V+KA +E+ V P +V ++++
Sbjct: 2 KDVVIVSAARTPIGKFG-GALKDVSAVELGAIVIKAALERAGVPPEQVDEVIMGQVLQAG 60
Query: 103 ----------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTV 146
VP T+N+ C SGL+AVA A AI+AG DI + G ESM+
Sbjct: 61 AGQNPARQAALKAGLPVEVPALTINKVCGSGLKAVALAAQAIRAGDADIVVAGGQESMSQ 120
Query: 147 NP--------------------MAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVT 186
P M +G + AF MG+T+EN+A ++G+T
Sbjct: 121 APHVLPGSRWGQKMGDVELVDTMIHDGLTD----AFNG-----YHMGITAENLAEQYGIT 171
Query: 187 RKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSV 246
R+EQD+ A+ S +KA AA AG+FKDEI+PV K + GD PV + D+ RP+T+
Sbjct: 172 REEQDEFALASQQKAEAAIKAGRFKDEIVPVTIKQ---RKGD--PVVVDTDEHPRPDTTA 226
Query: 247 SELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDP 306
LAKL+P F KDGT TAGN+S ++DGA AV++M + A GL L ++A GVDP
Sbjct: 227 ESLAKLRPAFDKDGTVTAGNASGINDGAAAVVVMSEAKAKELGLTPLARIVSYAVAGVDP 286
Query: 307 AIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALA 366
AIMG+GP AI A++ AG L D+DL EINEAFA+Q + +LGLDPEK+NVNGGA+A
Sbjct: 287 AIMGIGPVPAIRKALEKAGWSLADLDLIEINEAFAAQALAVEKELGLDPEKVNVNGGAIA 346
Query: 367 IGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
+GHP+G +GAR + TLLHEMKRRG + G+ ++CIG G G A + ER
Sbjct: 347 LGHPIGASGARILVTLLHEMKRRG--AKKGLATLCIGGGQGVALIVER 392
>gnl|CDD|181626 PRK09052, PRK09052, acetyl-CoA acetyltransferase; Provisional.
Length = 399
Score = 387 bits (997), Expect = e-133
Identities = 182/396 (45%), Positives = 249/396 (62%), Gaps = 36/396 (9%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKT-NVDPSEVGDIVV------- 102
D IVAA RT + K+ RG FK+T PDDLLA VL++ + + +DP + D +V
Sbjct: 7 DAYIVAATRTPVGKAPRGMFKNTRPDDLLAHVLRSAVAQVPGLDPKLIEDAIVGCAMPEA 66
Query: 103 -----------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 145
+V TVNR C+SGLQAVA A I+ G D+ I AG+ESM+
Sbjct: 67 EQGLNVARIGALLAGLPNSVGGVTVNRFCASGLQAVAMAADRIRVGEADVMIAAGVESMS 126
Query: 146 VNPMAWEG-SVNPKVKAFEQAQNCLLP--MGVTSENVAHRFGVTRKEQDQAAVDSHRKAA 202
+ PM S++P + F + +N + MG+T+E VA ++ V+R++QD A++SH+KA
Sbjct: 127 MVPMMGNKPSMSPAI--FARDENVGIAYGMGLTAEKVAEQWKVSREDQDAFALESHQKAI 184
Query: 203 AATAAGKFKDEIIP--VATKIVDPKTG--DEKPVTISVDDGIRPNTSVSELAKLKPVFKK 258
AA AG+FKDEI P + + D TG D K T+ +D+G R +TS+ LAKLKPVF
Sbjct: 185 AAQQAGEFKDEITPYEITERFPDLATGEVDVKTRTVDLDEGPRADTSLEGLAKLKPVFAN 244
Query: 259 DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIP 318
G+ TAGNSSQ SDGAGAV+L+ + L L F +FA GV P IMG+GP AIP
Sbjct: 245 KGSVTAGNSSQTSDGAGAVILVSEKALKQFNLTPLARFVSFAVAGVPPEIMGIGPIEAIP 304
Query: 319 AAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARC 378
AA+K AGL+ DD+D E+NEAFA+Q + LGLDP K+N GGA+A+GHPLG TGA
Sbjct: 305 AALKQAGLKQDDLDWIELNEAFAAQSLAVIRDLGLDPSKVNPLGGAIALGHPLGATGAIR 364
Query: 379 VATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
AT++H ++R ++G+++MC+GTGMGAA +FER
Sbjct: 365 TATVVHGLRRTNL--KYGMVTMCVGTGMGAAGIFER 398
>gnl|CDD|181072 PRK07661, PRK07661, acetyl-CoA acetyltransferase; Provisional.
Length = 391
Score = 383 bits (985), Expect = e-131
Identities = 179/389 (46%), Positives = 238/389 (61%), Gaps = 30/389 (7%)
Query: 53 VIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV---------- 102
VIVA RT + K+K+G K PDDL A V+K +++ + D+++
Sbjct: 5 VIVAGARTPVGKAKKGSLKTVRPDDLGALVVKETLKRAGNYEGPIDDLIIGCAMPEAEQG 64
Query: 103 --------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNP 148
TVP T+NR CSSGLQ++A A I G + I G ESM++ P
Sbjct: 65 LNMARNIGALAGLPYTVPAITINRYCSSGLQSIAYGAERIMLGHSEAVIAGGAESMSLVP 124
Query: 149 MAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAG 208
M V P + E A + MG T+E VA ++G++R++QD AV SH++AA A A G
Sbjct: 125 MMGH-VVRPNPRLVEAAPEYYMGMGHTAEQVAVKYGISREDQDAFAVRSHQRAAKALAEG 183
Query: 209 KFKDEIIPV---ATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAG 265
KF DEI+PV + + E+ +T S D+G+R +T++ L KL+P F G+ TAG
Sbjct: 184 KFADEIVPVDVTLRTVGENNKLQEETITFSQDEGVRADTTLEILGKLRPAFNVKGSVTAG 243
Query: 266 NSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAG 325
NSSQ+SDGA AVLLM R A GL L FR+FA GV P +MG+GP AIP A+K AG
Sbjct: 244 NSSQMSDGAAAVLLMDREKAESDGLKPLAKFRSFAVAGVPPEVMGIGPIAAIPKALKLAG 303
Query: 326 LQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHE 385
L+L DI LFE+NEAFASQ + +LGLD EK+NVNGGA+A+GHPLG TGA+ +L+HE
Sbjct: 304 LELSDIGLFELNEAFASQSIQVIRELGLDEEKVNVNGGAIALGHPLGCTGAKLTLSLIHE 363
Query: 386 MKRRGRDCRFGVISMCIGTGMGAAAVFER 414
MKRR +FG+++MCIG GMGAA VFE
Sbjct: 364 MKRRNE--QFGIVTMCIGGGMGAAGVFEL 390
>gnl|CDD|180843 PRK07108, PRK07108, acetyl-CoA acetyltransferase; Provisional.
Length = 392
Score = 329 bits (846), Expect = e-110
Identities = 168/397 (42%), Positives = 236/397 (59%), Gaps = 43/397 (10%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVE------- 103
+ VIV+ RT L KS RG F T+ L V++ +E+ +DP+EV D+++
Sbjct: 3 EAVIVSTARTPLAKSWRGAFNMTHGATLGGHVVQHAVERAKLDPAEVEDVIMGCANPEGA 62
Query: 104 -----------------TVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTV 146
TVP TVNR CSSGLQ +A A + AG D+ + G+ES++
Sbjct: 63 TGANIARQIALRAGLPVTVPGMTVNRFCSSGLQTIALAAQRVIAGEGDVFVAGGVESISC 122
Query: 147 ------NPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRK 200
M EG + E M T+ENVA R+G++++ QD+ V S ++
Sbjct: 123 VQNEMNRHMLREGWLV------EHKPEIYWSMLQTAENVAKRYGISKERQDEYGVQSQQR 176
Query: 201 AAAATAAGKFKDEIIP--VATKIVDPKTGD--EKPVTISVDDGIRPNTSVSELAKLKPVF 256
AAAA AAG+F DEI+P V + D TG K VT+S D+GIRP+T++ ++K++
Sbjct: 177 AAAAQAAGRFDDEIVPITVTAGVADKATGRLFTKEVTVSADEGIRPDTTLEGVSKIRSAL 236
Query: 257 KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVA 316
G TAGN+SQ SDGA A ++M VA R+GL LG+FR FA G +P MG+GP A
Sbjct: 237 P-GGVITAGNASQFSDGASACVVMNAKVAEREGLQPLGIFRGFAVAGCEPDEMGIGPVFA 295
Query: 317 IPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 376
+P +K AGL++DDIDL+E+NEAFA Q +YCR+ LG+ +++NVNGGA+A+GHP G +GA
Sbjct: 296 VPKLLKQAGLKVDDIDLWELNEAFAVQVLYCRDTLGIPMDRLNVNGGAIAVGHPYGVSGA 355
Query: 377 RCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 413
R L E KRRG ++ V++MCIG G GAA +FE
Sbjct: 356 RLTGHALIEGKRRG--AKYVVVTMCIGGGQGAAGLFE 390
>gnl|CDD|181592 PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed.
Length = 387
Score = 325 bits (835), Expect = e-108
Identities = 162/394 (41%), Positives = 225/394 (57%), Gaps = 40/394 (10%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKT-NVDPSEVGDI--------- 100
DVVIV A RT + +SK G F++ +DL A ++++++ + +DP+E+ DI
Sbjct: 3 DVVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPALDPAEIDDIIWGCVQQTL 62
Query: 101 ---------------VVETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 145
+ +VP TVNR C S +QA+ D A AI G D+ + G+E M
Sbjct: 63 EQGFNIARNAALLAGIPHSVPAVTVNRLCGSSMQALHDAARAIMTGDGDVFLIGGVEHMG 122
Query: 146 VNPMAWEGSVNPKV-KAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAA 204
PM +P + K +A MG+T+E + G++R++QD A SH++A AA
Sbjct: 123 HVPMNHGVDFHPGLSKNVAKAAGM---MGLTAEMLGKMHGISREQQDAFAARSHQRAWAA 179
Query: 205 TAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK-KDGTTT 263
T G+FK+EIIP + D D+ IRP T+V LA L+P F +GT T
Sbjct: 180 TQEGRFKNEIIP-----TEGHDADGVLKLFDYDEVIRPETTVEALAALRPAFDPVNGTVT 234
Query: 264 AGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKS 323
AG SS +SDGA A+L+M S A GL R+ A G DP+IMG GP A A+K
Sbjct: 235 AGTSSALSDGASAMLVMSESRAKELGLKPRARIRSMAVAGCDPSIMGYGPVPATQKALKR 294
Query: 324 AGLQLDDIDLFEINEAFASQFVYCRNKLGL---DPEKINVNGGALAIGHPLGTTGARCVA 380
AGL + DID+FE+NEAFA+Q + C LGL EK+N+NGGA+A+GHPLG +GAR
Sbjct: 295 AGLSISDIDVFELNEAFAAQSLPCLKDLGLLDKMDEKVNLNGGAIALGHPLGCSGARIST 354
Query: 381 TLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
TLL+ M+R +D +FG+ +MCIG G G A VFER
Sbjct: 355 TLLNLMER--KDAQFGLATMCIGLGQGIATVFER 386
>gnl|CDD|181625 PRK09051, PRK09051, beta-ketothiolase; Provisional.
Length = 394
Score = 322 bits (827), Expect = e-107
Identities = 164/403 (40%), Positives = 230/403 (57%), Gaps = 52/403 (12%)
Query: 51 DVVIVAAYRTALCKSKRGGF----KDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV---- 102
+VV+V+ RTA+ G F KD P DL A V++ + + VDP +VG +V
Sbjct: 4 EVVVVSGVRTAI-----GTFGGSLKDVAPTDLGATVVREALARAGVDPDQVGHVVFGHVI 58
Query: 103 --------------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLE 142
+ P VNR C SGLQA+ A AI G D+ IG G E
Sbjct: 59 PTEPRDMYLSRVAAINAGVPQETPAFNVNRLCGSGLQAIVSAAQAILLGDADVAIGGGAE 118
Query: 143 SMT----VNPMAWEGSVNPKVKAFEQAQNCL------LPMGVTSENVAHRFGVTRKEQDQ 192
SM+ + P A G+ K + L + MGVT+ENVA ++G++R+ QD
Sbjct: 119 SMSRAPYLLPAARWGARMGDAKLVDMMVGALHDPFGTIHMGVTAENVAAKYGISREAQDA 178
Query: 193 AAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKL 252
A++SHR+AAAA AAG FKD+I+PV K + G+ V D+ +R +T++ +LAKL
Sbjct: 179 LALESHRRAAAAIAAGYFKDQIVPVEIKT---RKGE---VVFDTDEHVRADTTLEDLAKL 232
Query: 253 KPVFKKD-GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV 311
KPVFKK+ GT TAGN+S ++DGA AV+L + A +GL L +A GVDP MG+
Sbjct: 233 KPVFKKENGTVTAGNASGINDGAAAVVLAEADAAEARGLKPLARLVGYAHAGVDPEYMGI 292
Query: 312 GPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPL 371
GP A A++ AGL + D+D+ E NEAFA+Q +LGLDP K+N NG +++GHP+
Sbjct: 293 GPVPATQKALERAGLTVADLDVIEANEAFAAQACAVTRELGLDPAKVNPNGSGISLGHPV 352
Query: 372 GTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
G TGA L+E++R G R+ +++MCIG G G AA+FER
Sbjct: 353 GATGAIITVKALYELQRIGG--RYALVTMCIGGGQGIAAIFER 393
>gnl|CDD|180563 PRK06445, PRK06445, acetyl-CoA acetyltransferase; Provisional.
Length = 394
Score = 309 bits (793), Expect = e-102
Identities = 155/400 (38%), Positives = 219/400 (54%), Gaps = 43/400 (10%)
Query: 50 DDVVIVAAYRTALCKSK-----RGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV-- 102
+DV +V RTA + + + F + P++L A ++ +IEKT + P E+ DI+
Sbjct: 2 EDVYLVDFARTAFSRFRPKDPQKDVFNNIRPEELAAMLINRLIEKTGIKPEEIDDIITGC 61
Query: 103 ----------------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAG 140
+P V+RQC+S L V+ A I G DI I G
Sbjct: 62 ALQVGENWLYGGRHPIFLARLPYNIPAMAVDRQCASSLTTVSIGAMEIATGMADIVIAGG 121
Query: 141 LESMTVNPMAWEGSVNPKVKAFEQAQ------NCLLPMGVTSENVAHRFGVTRKEQDQAA 194
+E MT PM + P K + MG+T+E +A G+ R+E D+ +
Sbjct: 122 VEHMTRTPMGDNPHIEPNPKLLTDPKYIEYDLTTGYVMGLTAEKLAEEAGIKREEMDRWS 181
Query: 195 VDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKP 254
+ SH+ AA A G FKDEI+P+ ++ + K + VD +RP+TS+ +LAKL P
Sbjct: 182 LRSHQLAAKAIQEGYFKDEILPIEVEV------EGKKKVVDVDQSVRPDTSLEKLAKLPP 235
Query: 255 VFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPA 314
FK DG TAGNSS ++ GA VLLM + + GL + R+F GV PAIMG GP
Sbjct: 236 AFKPDGVITAGNSSPLNSGASYVLLMSKKAVKKYGLKPMAKIRSFGFAGVPPAIMGKGPV 295
Query: 315 VAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTT 374
A A++ AGL + DIDL+EINEAFA +Y +LGLDPE +N+ GGA+AIGHPLG T
Sbjct: 296 PASKKALEKAGLSVKDIDLWEINEAFAVVVLYAIKELGLDPETVNIKGGAIAIGHPLGAT 355
Query: 375 GARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
GAR V TL +++ +G+D +GV ++C+G G G A V ER
Sbjct: 356 GARIVGTLARQLQIKGKD--YGVATLCVGGGQGGAVVLER 393
>gnl|CDD|235741 PRK06205, PRK06205, acetyl-CoA acetyltransferase; Provisional.
Length = 404
Score = 303 bits (778), Expect = 1e-99
Identities = 156/408 (38%), Positives = 222/408 (54%), Gaps = 52/408 (12%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV-------- 102
D VI RT + + G FKD ++L A V++A++E+T +DP+ + D++
Sbjct: 3 DAVICEPVRTPVGRFG-GAFKDVPAEELAATVIRALVERTGIDPARIDDVIFGQGYPNGE 61
Query: 103 ---------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT-- 145
TVP ++R+C SGLQAV A ++ G D+ I G ESM+
Sbjct: 62 APAIGRVAALDAGLPVTVPGMQLDRRCGSGLQAVITAAMQVQTGAADVVIAGGAESMSNV 121
Query: 146 ---VNPMAW---EGSVNPK---VKAFEQAQNCLLP----MGVTSENVAHRFGVTRKEQDQ 192
M W G V + E A P M T+EN+ +G++R+EQD
Sbjct: 122 EFYTTDMRWGVRGGGVQLHDRLARGRETAGGRRFPVPGGMIETAENLRREYGISREEQDA 181
Query: 193 AAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKL 252
AV SH++A AA AG+F DEI+PV V + GD P + D+ R +T++ LAKL
Sbjct: 182 LAVRSHQRAVAAQEAGRFDDEIVPVT---VPQRKGD--PTVVDRDEHPRADTTLESLAKL 236
Query: 253 KPVFKK---DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIM 309
+P+ K + T TAGN+S +D A A L+ A GL L ++A GV+P+ M
Sbjct: 237 RPIMGKQDPEATVTAGNASGQNDAAAACLVTTEDKAEELGLRPLARLVSWAVAGVEPSRM 296
Query: 310 GVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGL---DPEKINVNGGALA 366
G+GP A A+ AGL LDDIDL E+NEAFA+Q + + G D E++NVNG ++
Sbjct: 297 GIGPVPATEKALARAGLTLDDIDLIELNEAFAAQVLAVLKEWGFGADDEERLNVNGSGIS 356
Query: 367 IGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
+GHP+G TG R +ATLL E++R R R+G+ +MCIG G G AAVFER
Sbjct: 357 LGHPVGATGGRILATLLRELQR--RQARYGLETMCIGGGQGLAAVFER 402
>gnl|CDD|223261 COG0183, PaaJ, Acetyl-CoA acetyltransferase [Lipid metabolism].
Length = 392
Score = 291 bits (748), Expect = 2e-95
Identities = 149/405 (36%), Positives = 208/405 (51%), Gaps = 53/405 (13%)
Query: 49 GDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKT--NVDPSEVGDIVV---- 102
DV IV A RT K G + + L A ++ A +E+ +VD ++V D+++
Sbjct: 1 MRDVAIVGAGRTPFGKFGDGSLAELAAEALGAALIDAGLERAPADVDAADVDDVILGCVL 60
Query: 103 --------------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLE 142
+VP TVNR C+SGL AV A AI +G D+ + G+E
Sbjct: 61 QAGEQGQNIARQAALAAGLPGSVPAVTVNRACASGLAAVRLAAQAIASGEADVVLAGGVE 120
Query: 143 SMTVNPMAWEGS------VNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVD 196
M+ PM EG V+P + MG+T+E A R+G++R++QD+ AV
Sbjct: 121 KMSDAPMGREGVRVLDSAVDPMFEDPLGDATPGYLMGLTAERYAKRYGISREDQDEVAVK 180
Query: 197 SHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTS-VSE-LAKLKP 254
SH+ AAA AG F DEI P D + D R + S S+ A L P
Sbjct: 181 SHKNAAANPKAGFF-DEITPE----------DVLNSPVVADPLRRLDCSPTSDGAAALVP 229
Query: 255 VFKK-DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGP 313
F++ GT TAGN+S ++DGA A+LLM S A GL L R +A GVDP+IM GP
Sbjct: 230 AFEEVGGTVTAGNASGINDGAAALLLMSESKAKELGLAPLAAIRAYAMAGVDPSIM-DGP 288
Query: 314 AVAIPAAVKSAGLQ-LDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLG 372
A+ A+ AGL L+D+ L E EAFA+ + LG P +N +GGA+A+GHP+G
Sbjct: 289 VAAVHDALTIAGLLALEDLGLAEKGEAFAAVALGVTKILGDLP--VNPSGGAIALGHPIG 346
Query: 373 TTGARCVATLLHEMKRRG--RDCRFGVISMCIG-TGMGAAAVFER 414
TGAR + L +++ RG R G+ ++CIG G G AAV ER
Sbjct: 347 ATGARILVELARQLRGRGQVVAKRRGLATLCIGGGGQGVAAVLER 391
>gnl|CDD|168156 PRK05656, PRK05656, acetyl-CoA acetyltransferase; Provisional.
Length = 393
Score = 286 bits (733), Expect = 3e-93
Identities = 155/399 (38%), Positives = 229/399 (57%), Gaps = 42/399 (10%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV-------- 102
DVVIVAA RTA+ S +G + +L A V++ ++E+T +DP++V ++++
Sbjct: 3 DVVIVAATRTAI-GSFQGSLANIPAVELGAAVIRRLLEQTGLDPAQVDEVILGQVLTAGA 61
Query: 103 ---------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVN 147
+VP T+N+ C SGL+A+ A AI+ G ++ I G E+M++
Sbjct: 62 GQNPARQAAIKAGLPHSVPAMTLNKVCGSGLKALHLAAQAIRCGDAEVIIAGGQENMSLA 121
Query: 148 PMAWEGSVNPKVKAFEQAQNCLLP-----------MGVTSENVAHRFGVTRKEQDQAAVD 196
P G+ Q + ++ MG+T+EN+ ++G++R+ QD A
Sbjct: 122 PYVLPGARTGLRMGHAQLVDSMITDGLWDAFNDYHMGITAENLVEKYGISREAQDAFAAA 181
Query: 197 SHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 256
S +KA AA AG+F DEI P+ ++ + G+ P+ + D+ R T+ LAKLKP F
Sbjct: 182 SQQKAVAAIEAGRFDDEITPI---LIPQRKGE--PLAFATDEQPRAGTTAESLAKLKPAF 236
Query: 257 KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVA 316
KKDG+ TAGN+S ++DGA AVLLM + A GLP+L +A GVDPAIMG+GP A
Sbjct: 237 KKDGSVTAGNASSLNDGAAAVLLMSAAKAKALGLPVLAKIAAYANAGVDPAIMGIGPVSA 296
Query: 317 IPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 376
+ AG L ++DL E NEAFA+Q + +LG D K+NVNGGA+A+GHP+G +G
Sbjct: 297 TRRCLDKAGWSLAELDLIEANEAFAAQSLAVGKELGWDAAKVNVNGGAIALGHPIGASGC 356
Query: 377 RCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERG 415
R + TLLHEM R RD + G+ ++CIG G G A ER
Sbjct: 357 RVLVTLLHEMIR--RDAKKGLATLCIGGGQGVALAIERD 393
>gnl|CDD|181624 PRK09050, PRK09050, beta-ketoadipyl CoA thiolase; Validated.
Length = 401
Score = 278 bits (714), Expect = 3e-90
Identities = 157/398 (39%), Positives = 213/398 (53%), Gaps = 67/398 (16%)
Query: 68 GGFKDTYPDDLLAPVLKAVIEKT-NVDPSEVGDIVV------------------------ 102
G DDL A LKA++ + VD V D++
Sbjct: 19 GALSSVRADDLGAVPLKALMARNPGVDWEAVDDVIYGCANQAGEDNRNVARMSALLAGLP 78
Query: 103 ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNP-------------- 148
+VP T+NR C SG+ AV A AIKAG ++ I G+ESM+ P
Sbjct: 79 VSVPGTTINRLCGSGMDAVGTAARAIKAGEAELMIAGGVESMSRAPFVMGKADSAFSRQA 138
Query: 149 ------MAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAA 202
+ W VNP +KA Q + M T+ENVA + ++R +QD A+ S ++AA
Sbjct: 139 EIFDTTIGWR-FVNPLMKA----QYGVDSMPETAENVAEDYNISRADQDAFALRSQQRAA 193
Query: 203 AATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTT 262
AA AAG +EI+PV + K GD PV + D+ RP T++ LAKLKPVF+ DGT
Sbjct: 194 AAQAAGFLAEEIVPVT---IPQKKGD--PVVVDRDEHPRPETTLEALAKLKPVFRPDGTV 248
Query: 263 TAGNSSQVSDGAGAVLLMKRSVAMRKGLP----ILGVFRTFAAVGVDPAIMGVGPAVAIP 318
TAGN+S V+DGA A+LL + A + GL ILG A GV+P IMG+GPA A
Sbjct: 249 TAGNASGVNDGAAALLLASEAAAKKHGLTPRARILG----MATAGVEPRIMGIGPAPATR 304
Query: 319 AAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGL--DPEKINVNGGALAIGHPLGTTGA 376
+ GL +D D+ E+NEAFA+Q + +LGL D ++N NGGA+A+GHPLG +GA
Sbjct: 305 KLLARLGLTIDQFDVIELNEAFAAQGLAVLRQLGLADDDARVNPNGGAIALGHPLGMSGA 364
Query: 377 RCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
R V T LH+++R G R+ + +MCIG G G A ER
Sbjct: 365 RLVLTALHQLERTGG--RYALCTMCIGVGQGIALAIER 400
>gnl|CDD|181146 PRK07851, PRK07851, acetyl-CoA acetyltransferase; Provisional.
Length = 406
Score = 277 bits (711), Expect = 1e-89
Identities = 153/416 (36%), Positives = 224/416 (53%), Gaps = 66/416 (15%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKT-NVDPSEVGDIVV------- 102
+ VIV+ R+ + ++ +G KD PDDL A +++A ++K +DP+++ D+++
Sbjct: 3 EAVIVSTARSPIGRAFKGSLKDMRPDDLAAQMVRAALDKVPALDPTDIDDLMLGCGLPGG 62
Query: 103 ----------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTV 146
+ +P TVNR CSS LQ AIKAG D+ I AG+E+++
Sbjct: 63 EQGFNMARVVAVLLGYDFLPGTTVNRYCSSSLQTTRMAFHAIKAGEGDVFISAGVETVSR 122
Query: 147 NPM----AWEGSVNPKVKAFEQAQ-------------------NCLLP-----MGVTSEN 178
+ + NP F +AQ + LLP MG T+EN
Sbjct: 123 FAKGNSDSLPDTKNP---LFAEAQARTAARAEGGAEAWHDPREDGLLPDVYIAMGQTAEN 179
Query: 179 VAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDD 238
VA G++R+EQD+ V S +A A A G F+ EI PV +S DD
Sbjct: 180 VAQLTGISREEQDEWGVRSQNRAEEAIANGFFEREITPVTLP---------DGTVVSTDD 230
Query: 239 GIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRT 298
G R T+ ++++LKPVF+ DGT TAGN+ ++DGA AV++M + A GL L +
Sbjct: 231 GPRAGTTYEKVSQLKPVFRPDGTVTAGNACPLNDGAAAVVIMSDTKARELGLTPLARIVS 290
Query: 299 FAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKI 358
G+ P IMG+GP A A+ AG+ +DDIDL EINEAFA+Q + +LG+D +K+
Sbjct: 291 TGVSGLSPEIMGLGPVEASKQALARAGMSIDDIDLVEINEAFAAQVLPSARELGIDEDKL 350
Query: 359 NVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
NV+GGA+A+GHP G TGAR TLL+ + + D FG+ +MC+G G G A V ER
Sbjct: 351 NVSGGAIALGHPFGMTGARITTTLLNNL--QTHDKTFGLETMCVGGGQGMAMVLER 404
>gnl|CDD|131498 TIGR02445, fadA, fatty oxidation complex, beta subunit FadA. This
subunit of the FadBA complex has acetyl-CoA
C-acyltransferase (EC 2.3.1.16) activity, and is also
known as beta-ketothiolase and fatty oxidation complex,
beta subunit. This protein is almost always located
adjacent to FadB (TIGR02437). The FadBA complex is the
major complex active for beta-oxidation of fatty acids
in E. coli [Fatty acid and phospholipid metabolism,
Degradation].
Length = 385
Score = 274 bits (703), Expect = 7e-89
Identities = 163/393 (41%), Positives = 218/393 (55%), Gaps = 38/393 (9%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEK-TNVDPSEVGDI--------- 100
DVVIV RT + +SK G F++T +DL A ++ ++ + VDP+EV DI
Sbjct: 1 DVVIVDFGRTPMGRSKGGAFRNTRAEDLSAHLMSKLLARNPKVDPAEVEDIYWGCVQQTL 60
Query: 101 ---------------VVETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 145
+ T TVNR C S +QA+ D A AI G D+ + G+E M
Sbjct: 61 EQGFNIARNAALLAQIPHTSAAVTVNRLCGSSMQALHDAARAIMTGDADVCLVGGVEHMG 120
Query: 146 VNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAAT 205
PM +P + + MG+T+E + G++R++QD A SH +A AAT
Sbjct: 121 HVPMMHGVDFHPGMSLHVAKAAGM--MGLTAEMLGKMHGISREQQDAFAARSHARAHAAT 178
Query: 206 AAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK-KDGTTTA 264
GKFK+EIIP D G K D+ IRP T+V LA L+P F K+GT TA
Sbjct: 179 QEGKFKNEIIPTQGHDAD---GFLK--QFDYDEVIRPETTVESLAALRPAFDPKNGTVTA 233
Query: 265 GNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSA 324
G SS +SDGA A+L+M A GL R+ A G DP+IMG GP A A+K A
Sbjct: 234 GTSSALSDGASAMLVMSEQRANELGLKPRARIRSMAVAGCDPSIMGYGPVPATQKALKRA 293
Query: 325 GLQLDDIDLFEINEAFASQFVYCRNKLGL---DPEKINVNGGALAIGHPLGTTGARCVAT 381
GL + DID+FE+NEAFA+Q + C LGL EK+N+NGGA+A+GHPLG +GAR T
Sbjct: 294 GLSISDIDVFELNEAFAAQALPCLKDLGLLDKMDEKVNLNGGAIALGHPLGCSGARISTT 353
Query: 382 LLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
LL+ M++ +D FG+ +MCIG G G A VFER
Sbjct: 354 LLNLMEQ--KDATFGLATMCIGLGQGIATVFER 384
>gnl|CDD|131483 TIGR02430, pcaF, 3-oxoadipyl-CoA thiolase. Members of this family
are designated beta-ketoadipyl CoA thiolase, an enzyme
that acts at the end of pathways for the degradation of
protocatechuate (from benzoate and related compounds)
and of phenylacetic acid.
Length = 400
Score = 270 bits (693), Expect = 5e-87
Identities = 152/411 (36%), Positives = 214/411 (52%), Gaps = 60/411 (14%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKT-NVDPSEVGDIVV------- 102
+ I A RT + + G DDL A +KA++ + +D + + D++
Sbjct: 2 EAYICDAIRTPIGRYG-GSLSSVRADDLAAVPIKALLARNPQLDWAAIDDVIYGCANQAG 60
Query: 103 -----------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 145
+VP TVNR C SGL A+ A AIKAG D+ I G+ESM+
Sbjct: 61 EDNRNVARMAALLAGLPVSVPGTTVNRLCGSGLDAIGMAARAIKAGEADLLIAGGVESMS 120
Query: 146 VNP--------------------MAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGV 185
P + W +NP +KA + M T+ENVA FG+
Sbjct: 121 RAPFVMGKADSAFSRSAKIEDTTIGWR-FINPLMKA----LYGVDSMPETAENVAEEFGI 175
Query: 186 TRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTS 245
+R++QD A+ S ++ AAA A+G F +EI+PV + K G+ P + D+ RP T+
Sbjct: 176 SREDQDAFALRSQQRTAAAQASGFFAEEIVPVV---IPQKKGE--PTVVDQDEHPRPETT 230
Query: 246 VSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD 305
+ LAKLKPV + DGT TAGN+S V+DGA A+LL R GL A GV+
Sbjct: 231 LEGLAKLKPVVRPDGTVTAGNASGVNDGAAALLLASEEAVQRHGLTPRARILAAATAGVE 290
Query: 306 PAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGL--DPEKINVNGG 363
P IMG+GP A + AGL +D D+ E+NEAFA+Q + +LGL D ++N NGG
Sbjct: 291 PRIMGIGPVPATQKLLARAGLSIDQFDVIELNEAFAAQALAVLRELGLADDDARVNPNGG 350
Query: 364 ALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
A+A+GHPLG +GAR V T L +++R G R+ + +MCIG G G A ER
Sbjct: 351 AIALGHPLGASGARLVLTALRQLERSGG--RYALCTMCIGVGQGIALAIER 399
>gnl|CDD|236197 PRK08242, PRK08242, acetyl-CoA acetyltransferase; Validated.
Length = 402
Score = 265 bits (680), Expect = 4e-85
Identities = 147/416 (35%), Positives = 216/416 (51%), Gaps = 69/416 (16%)
Query: 51 DVVIVAAYRTALCKSKRGG-FKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV------- 102
+ I A RT K K+ G + P L A +L+A+ ++ +D + V D+V+
Sbjct: 3 EAYIYDAVRTPRGKGKKDGSLHEVKPVRLAAGLLEALRDRNGLDTAAVDDVVLGCVTPVG 62
Query: 103 -----------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 145
ETVP +NR C+SGL+AV AA +++G+ D+ I G+ESM+
Sbjct: 63 DQGADIARTAVLAAGLPETVPGVQINRFCASGLEAVNLAAAKVRSGWDDLVIAGGVESMS 122
Query: 146 VNPM-----AWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRK 200
PM AW +++P +P G++++ +A ++G +R++ D AV+S ++
Sbjct: 123 RVPMGSDGGAW--AMDPST----NFPTYFVPQGISADLIATKYGFSREDVDAYAVESQQR 176
Query: 201 AAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTI-SVDDGIRPNTSVSELAKLKPVFKKD 259
AAAA A G F ++PV D+ +TI D+ +RP T++ LAKLKP F
Sbjct: 177 AAAAWAEGYFAKSVVPVK---------DQNGLTILDHDEHMRPGTTMESLAKLKPSFAMM 227
Query: 260 GTT---------------------TAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRT 298
G AGNSS + DGA AVL+ GL
Sbjct: 228 GEMGGFDAVALQKYPEVERINHVHHAGNSSGIVDGAAAVLIGSEEAGKALGLKPRARIVA 287
Query: 299 FAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKI 358
A +G DP IM GP A A+ AGL +DDIDLFE+NEAFAS + L + +K+
Sbjct: 288 TATIGSDPTIMLTGPVPATRKALAKAGLTVDDIDLFELNEAFASVVLRFMQALDIPHDKV 347
Query: 359 NVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
NVNGGA+A+GHPLG TGA + T+L E++RRG+ R +I++C+G GMG A + ER
Sbjct: 348 NVNGGAIAMGHPLGATGAMILGTVLDELERRGK--RTALITLCVGGGMGIATIIER 401
>gnl|CDD|181311 PRK08235, PRK08235, acetyl-CoA acetyltransferase; Provisional.
Length = 393
Score = 259 bits (663), Expect = 1e-82
Identities = 145/400 (36%), Positives = 214/400 (53%), Gaps = 52/400 (13%)
Query: 53 VIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVETV------- 105
VIV+A RT K G KD +L +K +E+ NV +V ++++ TV
Sbjct: 5 VIVSAARTPFGKFG-GSLKDVKATELGGIAIKEALERANVSAEDVEEVIMGTVLQGGQGQ 63
Query: 106 -PVR---------------TVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPM 149
P R TVN+ C+SGL+AV I+AG + + G+ESM+ P
Sbjct: 64 IPSRQAARAAGIPWEVQTETVNKVCASGLRAVTLADQIIRAGDASVIVAGGMESMSNAPY 123
Query: 150 AWEGSV------NPKVK----------AFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQA 193
G+ + +V AF MGV VA G++R+ QD+
Sbjct: 124 ILPGARWGYRMGDNEVIDLMVADGLTCAFSGVH-----MGVYGGEVAKELGISREAQDEW 178
Query: 194 AVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLK 253
A SH++A +A G+F++EI+PV + + GD P+ ++ D+ R +T++ +LAKLK
Sbjct: 179 AYRSHQRAVSAHEEGRFEEEIVPVT---IPQRKGD--PIVVAKDEAPRKDTTIEKLAKLK 233
Query: 254 PVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGP 313
PVF K GT TAGN+ V+DGA A++LM A ++G L A+ V+ P
Sbjct: 234 PVFDKTGTITAGNAPGVNDGAAALVLMSEDRAKQEGRKPLATILAHTAIAVEAKDFPRTP 293
Query: 314 AVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGT 373
AI A ++ G ++DIDLFEINEAFA+ + G+DPEK+NVNGGA+A+GHP+G
Sbjct: 294 GYAINALLEKTGKTVEDIDLFEINEAFAAVALASTEIAGIDPEKVNVNGGAVALGHPIGA 353
Query: 374 TGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 413
+GAR + TL+HE+KRRG G+ ++C G G G A + E
Sbjct: 354 SGARIIVTLIHELKRRGGG--IGIAAICSGGGQGDAVLIE 391
>gnl|CDD|181242 PRK08131, PRK08131, acetyl-CoA acetyltransferase; Provisional.
Length = 401
Score = 258 bits (661), Expect = 3e-82
Identities = 153/407 (37%), Positives = 217/407 (53%), Gaps = 53/407 (13%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV-------- 102
D I R+ + G PDDL A V++ ++EK+ ++ D+++
Sbjct: 3 DAYIYDGLRSPFGRHA-GALASVRPDDLAATVIRRLLEKSGFPGDDIEDVILGCTNQAGE 61
Query: 103 ----------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTV 146
TVP +TVNR C+SGL AV D A AI G D+ + G+ESM+
Sbjct: 62 DSRNVARNALLLAGLPVTVPGQTVNRLCASGLAAVIDAARAITCGEGDLYLAGGVESMSR 121
Query: 147 NPM-------AWE----------GSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKE 189
P A+ G+ P K Q N +P T +NVA FG++R++
Sbjct: 122 APFVMGKAESAFSRDAKVFDTTIGARFPNPKIVAQYGNDSMPE--TGDNVAAEFGISRED 179
Query: 190 QDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSEL 249
D+ A S K AA G F DEI P+ P+ P ++ D+ RP+++V L
Sbjct: 180 ADRFAAQSQAKYQAAKEEGFFADEITPIEV----PQGRKLPPKLVAEDEHPRPSSTVEAL 235
Query: 250 AKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIM 309
KLKP+F+ G TAGN+S ++DGA A+L+ R+ + GL + + AA GV+P IM
Sbjct: 236 TKLKPLFE-GGVVTAGNASGINDGAAALLIGSRAAGEKYGLKPMARILSSAAAGVEPRIM 294
Query: 310 GVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGL--DPEKINVNGGALAI 367
G+GP AI A+ AGL LDD+D+ EINEAFASQ + C LG+ D ++N NGGA+A+
Sbjct: 295 GIGPVEAIKKALARAGLTLDDMDIIEINEAFASQVLGCLKGLGVDFDDPRVNPNGGAIAV 354
Query: 368 GHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
GHPLG +GAR T E++RRG+ R+ V+S+CIG G G A V ER
Sbjct: 355 GHPLGASGARLALTAARELQRRGK--RYAVVSLCIGVGQGLAMVIER 399
>gnl|CDD|215722 pfam00108, Thiolase_N, Thiolase, N-terminal domain. Thiolase is
reported to be structurally related to beta-ketoacyl
synthase (pfam00109), and also chalcone synthase.
Length = 262
Score = 252 bits (645), Expect = 1e-81
Identities = 110/268 (41%), Positives = 152/268 (56%), Gaps = 41/268 (15%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV-------- 102
DVVIV+A RT + S G KD DL A +KA +E+ V P +V ++++
Sbjct: 1 DVVIVSAARTPI-GSFGGSLKDLSAVDLGAIAIKAALERAGVKPEDVDEVIMGNVLQAGE 59
Query: 103 ---------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVN 147
++VP T+N+ C SGL+AVA A AI+AG DI + G+ESM+
Sbjct: 60 GQNPARQAALKAGIPDSVPAVTINKVCGSGLKAVALAAQAIRAGDADIVVAGGVESMSNA 119
Query: 148 PMAWEGS-----------VNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVD 196
P S V+ +K L+ MG+T+ENVA ++G++R+EQD+ A+
Sbjct: 120 PYVLPASRVGARMGDAKLVDTMLKDGLTDAFNLIHMGITAENVAKKYGISREEQDEFALR 179
Query: 197 SHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 256
S +KAAAA AGKFKDEI+PV K KP+ + D+GIRP T++ LAKLKP F
Sbjct: 180 SQQKAAAAQKAGKFKDEIVPVTI-----KGRKGKPLVVDKDEGIRPGTTLESLAKLKPAF 234
Query: 257 KKD-GTTTAGNSSQVSDGAGAVLLMKRS 283
K+ GT TAGN+S ++DGA AVLLM S
Sbjct: 235 DKENGTVTAGNASGLNDGAAAVLLMSES 262
>gnl|CDD|183998 PRK13359, PRK13359, beta-ketoadipyl CoA thiolase; Provisional.
Length = 400
Score = 251 bits (643), Expect = 1e-79
Identities = 153/411 (37%), Positives = 211/411 (51%), Gaps = 61/411 (14%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEK-TNVDPSEVGDIVV------- 102
+ I A RT + + G DDL A LKA++E+ +VD + + D++
Sbjct: 3 EAFICDAIRTPIGRYG-GALSSVRADDLGAVPLKALVERNPDVDWAAIDDVIYGCANQAG 61
Query: 103 -----------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 145
VP T+NR C SG+ AV A AIK+G + I G+ESM+
Sbjct: 62 EDNRNVARMSLLLAGLPHGVPGSTINRLCGSGMDAVGVAARAIKSGEAALMIAGGVESMS 121
Query: 146 VNP--------------------MAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGV 185
P + W VNP +K + M T+ENVA + V
Sbjct: 122 RAPFVMGKAESAFSRQAEIFDTTIGWR-FVNPLMKQ----LYGVDSMPETAENVATDYNV 176
Query: 186 TRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTS 245
+R +QD A+ S +KAA A A G EI+PV + K GD P+ +S D+ R T+
Sbjct: 177 SRADQDAFALRSQQKAARAQADGTLAQEIVPVT---IPQKKGD--PLVVSRDEHPRE-TT 230
Query: 246 VSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD 305
+ LAKLK V + DGT TAGN+S V+DGA A+LL + A R GL A GV+
Sbjct: 231 LEALAKLKGVVRPDGTVTAGNASGVNDGACALLLASEAAARRHGLKPRARVLGIATAGVE 290
Query: 306 PAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGL--DPEKINVNGG 363
P +MG+GPA A + G+ LD D+ E+NEAFASQ + +LGL D ++N NGG
Sbjct: 291 PRVMGIGPAPATQKLLARLGMTLDQFDVIELNEAFASQGLAVLRELGLADDDARVNPNGG 350
Query: 364 ALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
A+A+GHPLG +GAR V T L++++R G RF + +MCIG G G A ER
Sbjct: 351 AIALGHPLGASGARLVTTALYQLERTGG--RFALCTMCIGVGQGIAIAIER 399
>gnl|CDD|180595 PRK06504, PRK06504, acetyl-CoA acetyltransferase; Provisional.
Length = 390
Score = 249 bits (638), Expect = 5e-79
Identities = 143/399 (35%), Positives = 217/399 (54%), Gaps = 53/399 (13%)
Query: 54 IVAAYRTALCKSKRGG-FKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV---------- 102
IVAA RTA ++GG +P DL A VL A+++++ DP+ + D+++
Sbjct: 6 IVAAARTA--GGRKGGRLAGWHPADLAAQVLDALVDRSGADPALIEDVIMGCVSQVGEQA 63
Query: 103 --------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNP 148
E+VP +++RQC S QA+ A A+ +G DI I AG+ESMT P
Sbjct: 64 TNVARNAVLASKLPESVPGTSIDRQCGSSQQALHFAAQAVMSGTMDIVIAAGVESMTRVP 123
Query: 149 M-------AWEGSVNPKVKAFEQA-QNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRK 200
M A G + K E+ +E +A ++G+++ + D+ A+ SH++
Sbjct: 124 MGSPSTLPAKNGLGHYKSPGMEERYPGIQFSQFTGAEMMAKKYGLSKDQLDEFALQSHQR 183
Query: 201 AAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDG 260
A AAT AGKFK EI+P+ + D +VD+GIR + ++ +A +K + + G
Sbjct: 184 AIAATQAGKFKAEIVPL-----EITRADGSGEMHTVDEGIRFDATLEGIAGVKLI-AEGG 237
Query: 261 TTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGV-----FRTFAAVGVDPAIMGVGPAV 315
TA +SQ+ DGA V+ V +GL LGV +G DP IM P
Sbjct: 238 RLTAATASQICDGASGVM-----VVNERGLKALGVKPLARIHHMTVIGGDPVIMLEAPLP 292
Query: 316 AIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 375
A A+K AG+++DDIDL+E+NEAFAS + G DPE++NVNGGA+A+GHPLG +G
Sbjct: 293 ATERALKKAGMKIDDIDLYEVNEAFASVPLAWLKATGADPERLNVNGGAIALGHPLGASG 352
Query: 376 ARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
+ + TL+H +K+RG+ R+G+ +MC G GM + ER
Sbjct: 353 TKLMTTLVHALKQRGK--RYGLQTMCEGGGMANVTIVER 389
>gnl|CDD|181265 PRK08170, PRK08170, acetyl-CoA acetyltransferase; Provisional.
Length = 426
Score = 248 bits (635), Expect = 4e-78
Identities = 140/361 (38%), Positives = 200/361 (55%), Gaps = 60/361 (16%)
Query: 103 ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG--------- 153
E VP TV R C+SG+QA+ AA I G D+ + G+E+M+ P+ +
Sbjct: 78 EKVPAWTVQRNCASGMQALDSAAANIALGRADLVLAGGVEAMSHAPLLFSEKMVRWLAGW 137
Query: 154 ----SVNPKVKAFEQAQN-----------------CLLPMGVTSENVAHRFGVTRKEQDQ 192
S+ K+ A + + L MG T+E +AHRFG+TR++ D
Sbjct: 138 YAAKSIGQKLAALGKLRPSYLAPVIGLLRGLTDPVVGLNMGQTAEVLAHRFGITREQMDA 197
Query: 193 AAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKL 252
A SH++ AAA A G+ K E++P+ + D K D DDG+RP++S+ +LAKL
Sbjct: 198 YAARSHQRLAAAQAEGRLK-EVVPLFDR--DGKFYDH-------DDGVRPDSSMEKLAKL 247
Query: 253 KPVF-KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV 311
KP F + G TAGNSSQ++DGA +LL + GLP LG +DP+ MG+
Sbjct: 248 KPFFDRPYGRVTAGNSSQITDGACWLLLASEEAVKKYGLPPLGRIVDSQWAALDPSQMGL 307
Query: 312 GPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFV----------YCRNKLGL-------D 354
GP A ++ GL L+D+DL+EINEAFA+Q + YCR +LGL D
Sbjct: 308 GPVHAATPLLQRHGLTLEDLDLWEINEAFAAQVLACLAAWADEEYCREQLGLDGALGELD 367
Query: 355 PEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
E++NV+GGA+A+GHP+G +GAR V LLH +KRRG + G+ ++CIG G G A + ER
Sbjct: 368 RERLNVDGGAIALGHPVGASGARIVLHLLHALKRRG--TKRGIAAICIGGGQGGAMLLER 425
Query: 415 G 415
Sbjct: 426 V 426
>gnl|CDD|181123 PRK07801, PRK07801, acetyl-CoA acetyltransferase; Provisional.
Length = 382
Score = 246 bits (630), Expect = 7e-78
Identities = 140/408 (34%), Positives = 206/408 (50%), Gaps = 79/408 (19%)
Query: 54 IVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV----------- 102
IV A RT + K ++GG +P DL A VLK ++++T +DP+ V D++
Sbjct: 6 IVDAVRTPVGK-RKGGLAGVHPADLGAHVLKGLVDRTGIDPAAVDDVIFGCVDTIGPQAG 64
Query: 103 -------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPM 149
E VP TV+RQC S QA+ A A+ +G D+ + G+++M+ P+
Sbjct: 65 NIARTSWLAAGLPEEVPGVTVDRQCGSSQQAIHFAAQAVMSGTQDLVVAGGVQNMSQIPI 124
Query: 150 AWEGSVNPKVKAFEQAQNCLLPMGVT-----SENVAHRFG------------------VT 186
+ A +G T S+ HR+G ++
Sbjct: 125 S-------------SAMTAGEQLGFTSPFAESKGWLHRYGDQEVSQFRGAELIAEKWGIS 171
Query: 187 RKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSV 246
R+E ++ A++SHR+A AA AG+F +EI+PV ++VD+G R TS+
Sbjct: 172 REEMERFALESHRRAFAAIRAGRFDNEIVPVG--------------GVTVDEGPR-ETSL 216
Query: 247 SELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDP 306
++A LKP+ + G TA +SQ+SDGA AVLL R GL + G DP
Sbjct: 217 EKMAGLKPLV-EGGRLTAAVASQISDGASAVLLASERAVKRHGLTPRARIHHLSVRGDDP 275
Query: 307 AIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALA 366
M P A A++ GL +DDID+ EINEAFA + + G DP K+N NGGA+A
Sbjct: 276 VFMLTAPIPATRYALEKTGLSIDDIDVVEINEAFAPVVLAWLKETGADPAKVNPNGGAIA 335
Query: 367 IGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
+GHPLG TGA+ + TLLHE++R G R+G+ +MC G G + ER
Sbjct: 336 LGHPLGATGAKLMTTLLHELERTGG--RYGLQTMCEGGGTANVTIIER 381
>gnl|CDD|181145 PRK07850, PRK07850, acetyl-CoA acetyltransferase; Provisional.
Length = 387
Score = 245 bits (626), Expect = 3e-77
Identities = 141/395 (35%), Positives = 205/395 (51%), Gaps = 46/395 (11%)
Query: 53 VIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVETV------- 105
VIV A RT + K + G + +LL V +AV+++ +DP +V ++ V
Sbjct: 5 VIVEAVRTPIGK-RNGWLSGLHAAELLGAVQRAVLDRAGIDPGDVEQVIGGCVTQAGEQS 63
Query: 106 --PVR---------------TVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNP 148
R T++ QC S QA VA I AG D+GI G+E+M+ P
Sbjct: 64 NNITRTAWLHAGLPYHVGATTIDCQCGSAQQANHLVAGLIAAGAIDVGIACGVEAMSRVP 123
Query: 149 M---AWEGSVNPKVKAFEQAQNCLLPMG---VTSENVAHRFGVTRKEQDQAAVDSHRKAA 202
+ A G P+ +++ + M +E +A R G+TR++ D + S R+AA
Sbjct: 124 LGANAGPGRGLPRPDSWD------IDMPNQFEAAERIAKRRGITREDVDAFGLRSQRRAA 177
Query: 203 AATAAGKFKDEIIPVATKIVDPK---TGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKD 259
A A G+F EI PV ++D + TG+ + VT D G+R +T++ LA LKPV +
Sbjct: 178 QAWAEGRFDREISPVQAPVLDEEGQPTGETRLVT--RDQGLR-DTTMEGLAGLKPVLE-G 233
Query: 260 GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPA 319
G TAG SSQ+SDGA AVL M A GL A VG +P GP A
Sbjct: 234 GIHTAGTSSQISDGAAAVLWMDEDRARALGLRPRARIVAQALVGAEPYYHLDGPVQATAK 293
Query: 320 AVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCV 379
++ AG+++ DIDL EINEAFAS + D +K+NVNGGA+A+GHP+G+TGAR +
Sbjct: 294 VLEKAGMKIGDIDLVEINEAFASVVLSWAQVHEPDMDKVNVNGGAIALGHPVGSTGARLI 353
Query: 380 ATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
T LHE++R + +I+MC G + + ER
Sbjct: 354 TTALHELERTDK--STALITMCAGGALSTGTIIER 386
>gnl|CDD|181597 PRK08963, fadI, 3-ketoacyl-CoA thiolase; Reviewed.
Length = 428
Score = 246 bits (630), Expect = 3e-77
Identities = 149/435 (34%), Positives = 215/435 (49%), Gaps = 80/435 (18%)
Query: 49 GDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVETV--- 105
GD + IV+ RT K + F DL V+ ++ ++ +DP + +V V
Sbjct: 4 GDRIAIVSGLRTPFAK-QATAFHGIPAVDLGKMVVGELLARSEIDPELIEQLVFGQVVQM 62
Query: 106 ----------------PVRT----VNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 145
V T V+R C++ QAVA+VA +I AG DIGI G +S +
Sbjct: 63 PEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAESIMAGTIDIGIAGGADSSS 122
Query: 146 VNP-------------MAWEGSVNPKVKAFEQAQ-NCLLP-------------MGVTSEN 178
V P + ++ ++K F + + LLP MG T+E
Sbjct: 123 VLPIGVSKKLARALVDLNKARTLGQRLKLFSRLRLRDLLPVPPAVAEYSTGLRMGDTAEQ 182
Query: 179 VAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDD 238
+A +G++R+EQD A SH+ AA A A GK DE V T V P + D+
Sbjct: 183 MAKTYGISREEQDALAHRSHQLAAQAWAEGKLDDE---VMTAHVPPYKQ-----PLEEDN 234
Query: 239 GIRPNTSVSELAKLKPVF-KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFR 297
IR ++++ + AKL+P F +K GT TA NS+ ++DGA AVLLM S A GL LG R
Sbjct: 235 NIRGDSTLEDYAKLRPAFDRKHGTVTAANSTPLTDGAAAVLLMSESRAKALGLTPLGYLR 294
Query: 298 TFAAVGVDP-AIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFV----------Y 346
++A +D M +GPA A P A++ AGL L D+ L +++EAFA+Q + +
Sbjct: 295 SYAFAAIDVWQDMLLGPAYATPLALERAGLTLADLTLIDMHEAFAAQTLANLQMFASERF 354
Query: 347 CRNKLG-------LDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVIS 399
R KLG +D K NV GG++A GHP TGAR + LHE++RRG G+ +
Sbjct: 355 AREKLGRSQAIGEVDMSKFNVLGGSIAYGHPFAATGARMITQTLHELRRRGGG--LGLTT 412
Query: 400 MCIGTGMGAAAVFER 414
C G+GAA V E
Sbjct: 413 ACAAGGLGAAMVLEV 427
>gnl|CDD|215347 PLN02644, PLN02644, acetyl-CoA C-acetyltransferase.
Length = 394
Score = 237 bits (607), Expect = 2e-74
Identities = 133/404 (32%), Positives = 206/404 (50%), Gaps = 53/404 (13%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVL-----KAVIEKTNVDPSEVGDIVV--- 102
DV IV RT + GGF + L A L +A +E+ VDP+ V ++
Sbjct: 2 DVCIVGVARTPI-----GGFLGSL-SSLSATELGSIAIQAALERAGVDPALVQEVFFGNV 55
Query: 103 --------------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLE 142
+ TVN+ C+SG++AV A +I+ G D+ + G+E
Sbjct: 56 LSANLGQAPARQAALGAGLPPSTICTTVNKVCASGMKAVMLAAQSIQLGINDVVVAGGME 115
Query: 143 SMTVNPMAWEGSVNPKVKAFEQAQNCLL-----------PMGVTSENVAHRFGVTRKEQD 191
SM+ P + + + +L MGV +E A ++ ++R+EQD
Sbjct: 116 SMSNAPKYLPEARKGSRLGHDTVVDGMLKDGLWDVYNDFGMGVCAELCADQYSISREEQD 175
Query: 192 QAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAK 251
A+ S+ +A AA AG F EI+PV P V + D+G+ +L K
Sbjct: 176 AYAIQSYERAIAAQEAGAFAWEIVPVEV----PGGRGRPSVIVDKDEGLGKFDPA-KLRK 230
Query: 252 LKPVFKKD-GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMG 310
L+P FK+D G+ TAGN+S +SDGA A++L+ A+ GL ++ R +A P +
Sbjct: 231 LRPSFKEDGGSVTAGNASSISDGAAALVLVSGEKALELGLQVIAKIRGYADAAQAPELFT 290
Query: 311 VGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHP 370
PA+AIP A+K AGL+ +D +EINEAF+ + + LGLDPEK+NV+GGA+++GHP
Sbjct: 291 TAPALAIPKALKHAGLEASQVDYYEINEAFSVVALANQKLLGLDPEKVNVHGGAVSLGHP 350
Query: 371 LGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
+G +GAR + TLL ++ + ++GV +C G G +A V E
Sbjct: 351 IGCSGARILVTLLGVLRSKNG--KYGVAGICNGGGGASAIVVEL 392
>gnl|CDD|168632 PRK06633, PRK06633, acetyl-CoA acetyltransferase; Provisional.
Length = 392
Score = 236 bits (603), Expect = 6e-74
Identities = 136/404 (33%), Positives = 219/404 (54%), Gaps = 60/404 (14%)
Query: 52 VVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV--------- 102
V I A RTA S G T L A ++K +++ + +DP+ V ++++
Sbjct: 5 VYITHAKRTAF-GSFMGSLSTTPAPMLAAHLIKDILQNSKIDPALVNEVILGQVITGGSG 63
Query: 103 --------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT--- 145
+ VP T+N+ C SGL++VA A +I G +I I G E+M+
Sbjct: 64 QNPARQTLIHAGIPKEVPGYTINKVCGSGLKSVALAANSIMTGDNEIVIAGGQENMSLGM 123
Query: 146 ----------------VNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKE 189
V+ M ++G + F MG+T+EN++ +F ++R+E
Sbjct: 124 HGSYIRAGAKFGDIKMVDLMQYDGLTDVFSGVF---------MGITAENISKQFNISRQE 174
Query: 190 QDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSEL 249
QD+ A+ SH+KAA A AG FKDEI+P+ I + D+ +RP+TS+ L
Sbjct: 175 QDEFALSSHKKAAKAQLAGIFKDEILPIEVTI------KKTTSLFDHDETVRPDTSLEIL 228
Query: 250 AKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIM 309
+KL+P F K+G TAGN+S ++DGA ++++ + L L ++A+ GVDP+IM
Sbjct: 229 SKLRPAFDKNGVVTAGNASSINDGAACLMVVSEEALKKHNLTPLARIVSYASAGVDPSIM 288
Query: 310 GVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGH 369
G P A A+ AG ++D+++ E+NEAFA+Q +Y ++ D EK+N+NGGA+AIGH
Sbjct: 289 GTAPVPASQKALSKAGWSVNDLEVIEVNEAFAAQSIYVNREMKWDMEKVNINGGAIAIGH 348
Query: 370 PLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 413
P+G +G R + TL+H ++R + G++++CIG GMG A E
Sbjct: 349 PIGASGGRVLITLIHGLRR--AKAKKGLVTLCIGGGMGMAMCVE 390
>gnl|CDD|180659 PRK06690, PRK06690, acetyl-CoA acetyltransferase; Provisional.
Length = 361
Score = 219 bits (560), Expect = 8e-68
Identities = 129/381 (33%), Positives = 195/381 (51%), Gaps = 46/381 (12%)
Query: 53 VIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEV--GDIVVE------- 103
VIV A RT + K K G KD L AP+L + + + +V G++V
Sbjct: 4 VIVEAKRTPIGK-KNGMLKDYEVQQLAAPLLTFLSKGMEREIDDVILGNVVGPGGNVARL 62
Query: 104 ---------TVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGS 154
+P T++RQC +GL+A+ I+ G I G+ES + +P
Sbjct: 63 SALEAGLGLHIPGVTIDRQCGAGLEAIRTACHFIQGGAGKCYIAGGVESTSTSPFQNRAR 122
Query: 155 VNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEI 214
+P+ MGV +E VA R+ +TR+ QD+ A S+++ A G +EI
Sbjct: 123 FSPETIGDPD-------MGVAAEYVAERYNITREMQDEYACLSYKRTLQALEKGYIHEEI 175
Query: 215 IPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSEL-AKLKPVFKKDGTTTAGNSSQVSDG 273
+ + D+ I+ + + + KP F +GT TAGNS V+DG
Sbjct: 176 LSFNGLL---------------DESIKKEMNYERIIKRTKPAFLHNGTVTAGNSCGVNDG 220
Query: 274 AGAVLLMKRSVAMRKGL-PILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDID 332
A AVL+M+ A + G P+L R+ A VGVDP + G GP A+ + ++++DID
Sbjct: 221 ACAVLVMEEGQARKLGYKPVLRFVRS-AVVGVDPNLPGTGPIFAVNKLLNEMNMKVEDID 279
Query: 333 LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRD 392
FEINEAFAS+ V C +L + EK+NVNGGA+A+GHP G +GA V L ++ KR D
Sbjct: 280 YFEINEAFASKVVACAKELQIPYEKLNVNGGAIALGHPYGASGAMLVTRLFYQAKR--ED 337
Query: 393 CRFGVISMCIGTGMGAAAVFE 413
++G+ ++ IG G+G A +FE
Sbjct: 338 MKYGIATLGIGGGIGLALLFE 358
>gnl|CDD|236440 PRK09268, PRK09268, acetyl-CoA acetyltransferase; Provisional.
Length = 427
Score = 218 bits (557), Expect = 2e-66
Identities = 144/442 (32%), Positives = 198/442 (44%), Gaps = 100/442 (22%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV-------- 102
V I+ R +S G + D D+L L ++++ + +G++V
Sbjct: 8 RVAILGGNRIPFARSN-GAYADASNQDMLTAALDGLVDRFGLQGERLGEVVAGAVLKHSR 66
Query: 103 ------ETV---------PVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVN 147
E V P + + C +GL+A VA I G D GI G+++ +
Sbjct: 67 DFNLTRECVLGSALSPYTPAYDLQQACGTGLEAAILVANKIALGQIDSGIAGGVDTTSDA 126
Query: 148 PMAWE-----------------------GSVNPKVKAFEQAQN----CLLPMGVTSENVA 180
P+A G + PK A E +N L MG + A
Sbjct: 127 PIAVNEGLRKILLELNRAKTTGDRLKALGKLRPKHLAPEIPRNGEPRTGLSMGEHAAITA 186
Query: 181 HRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGI 240
+G++R+ QD+ A SH+ AAA G F D I P G + D+ +
Sbjct: 187 KEWGISREAQDELAAASHQNLAAAYDRGFFDDLITPFL--------GLTR------DNNL 232
Query: 241 RPNTSVSELAKLKPVFKK--DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRT 298
RP++S+ +LAKLKPVF K T TAGNS+ ++DGA VLL A GLP+L
Sbjct: 233 RPDSSLEKLAKLKPVFGKGGRATMTAGNSTPLTDGASVVLLASEEWAAEHGLPVLAYLVD 292
Query: 299 F--AAV----GVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFV------- 345
AAV G + +M PA A+P + GL L D D +EI+EAFASQ +
Sbjct: 293 AETAAVDFVHGKEGLLMA--PAYAVPRLLARNGLTLQDFDFYEIHEAFASQVLATLKAWE 350
Query: 346 ---YCRNKLGL-------DPEKINVNGGALAIGHPLGTTGARCVATL---LHEMKRRGRD 392
YCR +LGL D K+NVNG +LA GHP TG R VATL L E K GR
Sbjct: 351 DEEYCRERLGLDAPLGSIDRSKLNVNGSSLAAGHPFAATGGRIVATLAKLLAE-KGSGR- 408
Query: 393 CRFGVISMCIGTGMGAAAVFER 414
G+IS+C G G A+ ER
Sbjct: 409 ---GLISICAAGGQGVTAILER 427
>gnl|CDD|145779 pfam02803, Thiolase_C, Thiolase, C-terminal domain. Thiolase is
reported to be structurally related to beta-ketoacyl
synthase (pfam00109), and also chalcone synthase.
Length = 123
Score = 191 bits (488), Expect = 3e-60
Identities = 76/125 (60%), Positives = 97/125 (77%), Gaps = 2/125 (1%)
Query: 290 LPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRN 349
L L R++A VGVDPAIMG+GPA AIP A+K AGL ++DIDLFEINEAFA+Q +
Sbjct: 1 LKPLARIRSYATVGVDPAIMGIGPAYAIPKALKKAGLTVNDIDLFEINEAFAAQALAVAK 60
Query: 350 KLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAA 409
LG+DPEK+NVNGGA+A+GHPLG +GAR + TLLHE+KRRG ++G+ ++CIG G G A
Sbjct: 61 DLGIDPEKVNVNGGAIALGHPLGASGARILVTLLHELKRRGG--KYGLATLCIGGGQGVA 118
Query: 410 AVFER 414
+ ER
Sbjct: 119 MIIER 123
>gnl|CDD|235675 PRK06025, PRK06025, acetyl-CoA acetyltransferase; Provisional.
Length = 417
Score = 200 bits (509), Expect = 1e-59
Identities = 135/427 (31%), Positives = 195/427 (45%), Gaps = 76/427 (17%)
Query: 51 DVVIVAAYRT--ALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVETVPVR 108
+ I+ A RT + K +G +P L A VLKA+ E+ ++ ++V DI+ T R
Sbjct: 3 EAYIIDAVRTPRGIGKVGKGALAHLHPQHLAATVLKALAERNGLNTADVDDIIWSTSSQR 62
Query: 109 ------------------------TVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESM 144
T++R C G+ +V AA I +G D+ I G E M
Sbjct: 63 GKQGGDLGRMAALDAGYDIKASGVTLDRFCGGGITSVNLAAAQIMSGMEDLVIAGGTEMM 122
Query: 145 -----TVNPMAWEGSVNPKVKAFEQAQNCLLPM---GVTSENVAHRFGVTRKEQDQAAVD 196
G + + L P GV + +A G+TR+ D ++
Sbjct: 123 SYTAAMAAEDMAAGKPPLGMGSGNLRLRALHPQSHQGVCGDAIATMEGITREALDALGLE 182
Query: 197 SHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 256
S R+AA A G+F ++PV D+ V + ++ RP T+ LA LKP F
Sbjct: 183 SQRRAARAIKEGRFDKSLVPV--------YRDDGSVALDHEEFPRPQTTAEGLAALKPAF 234
Query: 257 KK-------DGTTT-------------------AGNSSQVSDGAGAVLLMKRSVAMRKGL 290
D TT AGNSS V DGA A+LL ++ A + GL
Sbjct: 235 TAIADYPLDDKGTTYRGLINQKYPDLEIKHVHHAGNSSGVVDGAAALLLASKAYAEKHGL 294
Query: 291 PILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAF---ASQFVYC 347
A +G DP +M P A + AGL DDIDL+EINEAF A +F+
Sbjct: 295 KPRARIVAMANMGDDPTLMLNAPVPAAKKVLAKAGLTKDDIDLWEINEAFAVVAEKFI-- 352
Query: 348 RNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMG 407
L LD +K+NVNGGA+A+GHP+G TG+ + T+L E++RRG + G+++MC GM
Sbjct: 353 -RDLDLDRDKVNVNGGAIALGHPIGATGSILIGTVLDELERRGL--KRGLVTMCAAGGMA 409
Query: 408 AAAVFER 414
A + ER
Sbjct: 410 PAIIIER 416
>gnl|CDD|180775 PRK06954, PRK06954, acetyl-CoA acetyltransferase; Provisional.
Length = 397
Score = 198 bits (505), Expect = 2e-59
Identities = 134/409 (32%), Positives = 192/409 (46%), Gaps = 55/409 (13%)
Query: 45 TSVYGDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVET 104
T+V D +VI +A RT + + +G F L A + A +E+ + P ++ ++V+
Sbjct: 2 TAVDQDPIVIASAARTPMA-AFQGEFASLTAPQLGAAAIAAAVERAGLKPEQIDEVVMGC 60
Query: 105 V--------PVR---------------TVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGL 141
V P R TVN+ C SG++A + AG D+ + G+
Sbjct: 61 VLPAGQGQAPARQAALGAGLPLSVGCTTVNKMCGSGMRAAMFAHDMLVAGSVDVIVAGGM 120
Query: 142 ESMTVNPMAWEGSVNPKVKA-----------------FEQAQNCLLPMGVTSENVAHRFG 184
ESMT P + PK + E A + MG +E A +G
Sbjct: 121 ESMTNAPY-----LLPKARGGMRMGHGQVLDHMFLDGLEDAYDKGRLMGTFAEECAGEYG 175
Query: 185 VTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNT 244
TR+ QD A++S +A A G F EI PV V K GD I D+
Sbjct: 176 FTREAQDAFAIESLARAKRANEDGSFAWEIAPVT---VAGKKGD---TVIDRDEQPF-KA 228
Query: 245 SVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGV 304
+ ++ LKP F K GT TA NSS +SDGA A+++M+ S A R GL L +
Sbjct: 229 NPEKIPTLKPAFSKTGTVTAANSSSISDGAAALVMMRASTAKRLGLAPLARVVGHSTFAQ 288
Query: 305 DPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGA 364
P+ P AI + G + ++DLFEINEAFA + + GL EK+NVNGGA
Sbjct: 289 APSKFTTAPVGAIRKLFEKNGWRAAEVDLFEINEAFAVVTMAAMKEHGLPHEKVNVNGGA 348
Query: 365 LAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 413
A+GHP+G +GAR + TL+ ++ RG + GV S+CIG G A E
Sbjct: 349 CALGHPIGASGARILVTLIGALRARG--GKRGVASLCIGGGEATAMGIE 395
>gnl|CDD|131499 TIGR02446, FadI, fatty oxidation complex, beta subunit FadI. This
subunit of the FadJI complex has acetyl-CoA
C-acyltransferase (EC 2.3.1.16) activity, and is also
known as beta-ketothiolase and fatty oxidation complex,
beta subunit, and YfcY. This protein is almost always
located adjacent to FadJ (TIGR02440). The FadJI complex
is needed for anaerobic beta-oxidation of short-chain
fatty acids in E. coli [Fatty acid and phospholipid
metabolism, Degradation].
Length = 430
Score = 189 bits (481), Expect = 2e-55
Identities = 132/434 (30%), Positives = 201/434 (46%), Gaps = 80/434 (18%)
Query: 49 GDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVETV--- 105
G+ + IVA RT + + F DL V+ ++ ++ +DP + +V V
Sbjct: 6 GERIAIVAGLRTPFAR-QATAFHGIPAVDLGKMVVSELLARSEIDPKLIEQLVFGQVVQM 64
Query: 106 --------------------PVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 145
+V R C++ Q+ +VA +I AG DIGI G +S +
Sbjct: 65 PEAPNIAREIVLGTGMNVHTDAYSVTRACATSFQSAVNVAESIMAGAIDIGIAGGADSSS 124
Query: 146 VNPMAWEGSVN------PKVKAFEQAQNCL---------------------LPMGVTSEN 178
V P+ + K + Q L MG T+E
Sbjct: 125 VLPIGVSKKLAASLVDLNKARTLGQKLKVFSRLGLKDLMPVPPAVAEYSTGLSMGQTAEQ 184
Query: 179 VAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDD 238
+A +G+TR EQD A SH A+ A GK E V T P ++ I+ D+
Sbjct: 185 MAKTYGITRAEQDALAHRSHTLASQAWRDGKLAGE---VMTAFPPPY---KQW--IAEDN 236
Query: 239 GIRPNTSVSELAKLKPVF-KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFR 297
IR N++++ AKL+P F +K G+ TA NS+ ++DGA AV+LM+ A G+ LG R
Sbjct: 237 NIRHNSTLAGYAKLRPAFDRKHGSVTAANSTPLTDGAAAVILMREGRAKELGMEPLGYIR 296
Query: 298 TFAAVGVDP-AIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFV----------Y 346
++A +D M +GP+ A P A++ AGL L D+ L +++EAFA+Q + +
Sbjct: 297 SYAFTAIDVWQDMLMGPSYATPLALQRAGLALSDLTLIDMHEAFAAQTLANVQMFASDKF 356
Query: 347 CRNKLG-------LDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVIS 399
+ LG +D K NV GG++A GHP TGAR + L E+KRRG G+ +
Sbjct: 357 AQENLGRSKAMGEIDMSKFNVLGGSIAYGHPFAATGARMITQTLRELKRRGGG--LGLNT 414
Query: 400 MCIGTGMGAAAVFE 413
C G+GAA + E
Sbjct: 415 ACAAGGLGAAMILE 428
>gnl|CDD|102340 PRK06366, PRK06366, acetyl-CoA acetyltransferase; Provisional.
Length = 388
Score = 187 bits (477), Expect = 2e-55
Identities = 124/401 (30%), Positives = 195/401 (48%), Gaps = 56/401 (13%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV-------- 102
DV IV+A RTA+ K R F L +KAVI+ +DP+ V ++++
Sbjct: 3 DVYIVSAKRTAIGKFGRS-FSKIKAPQLGGAAIKAVIDDAKLDPALVQEVIMGNVIQAGV 61
Query: 103 ---------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVN 147
V TVN C+SG+ AV A I G D+ I G+E+M+
Sbjct: 62 GQNPAGQAAYHAGLPFGVTKYTVNVVCASGMLAVESAAREIMLGERDLVIAGGMENMSNA 121
Query: 148 PMAWEGSV--NPK---VKAFEQAQNCLLP----------MGVTSENVAHRFGVTRKEQDQ 192
P + PK K ++ L+ MGV++E A ++G+TR+ D+
Sbjct: 122 PFLLPSDLRWGPKHLLHKNYKIDDAMLVDGLIDAFYFEHMGVSAERTARKYGITREMADE 181
Query: 193 AAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKL 252
+V S+ +A AT +G+F++EI+P + D+GIR T++ +LAKL
Sbjct: 182 YSVQSYERAIRATESGEFRNEIVPFN--------------DLDRDEGIR-KTTMEDLAKL 226
Query: 253 KPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVG 312
P F K+G TAGNS+Q+SDG A+++ GL + + + +DP
Sbjct: 227 PPAFDKNGILTAGNSAQLSDGGSALVMASEKAINEYGLKPIARITGYESASLDPLDFVEA 286
Query: 313 PAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLG 372
P A ++ +D DL E NEAF+ + R++L +D E+ NVNGGA+AIGHP+G
Sbjct: 287 PIPATRKLLEKQNKSIDYYDLVEHNEAFSIASIIVRDQLKIDNERFNVNGGAVAIGHPIG 346
Query: 373 TTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFE 413
+G+R + TL++ +K R + G+ ++C G G E
Sbjct: 347 NSGSRIIVTLINALKT--RHMKTGLATLCHGGGGAHTLTLE 385
>gnl|CDD|238422 cd00826, nondecarbox_cond_enzymes, nondecarboxylating condensing
enzymes; In general, thiolases catalyze the reversible
thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and
acetyl-CoA, a 2-step reaction involving a covalent
intermediate formed with a catalytic cysteine. There are
2 functional different classes: thiolase-I
(3-ketoacyl-CoA thiolase) and thiolase-II
(acetoacetyl-CoA thiolase). Thiolase-I can cleave longer
fatty acid molecules and plays an important role in the
beta-oxidative degradation of fatty acids. Thiolase-II
has a high substrate specificity. Although it can cleave
acetoacyl-CoA, its main function is the synthesis of
acetoacyl-CoA from two molecules of acetyl-CoA, which
gives it importance in several biosynthetic pathways.
Length = 393
Score = 155 bits (392), Expect = 5e-43
Identities = 114/418 (27%), Positives = 159/418 (38%), Gaps = 85/418 (20%)
Query: 55 VAAYRTALCK--SKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVETV------- 105
A TA K + G + + A + A +E V V + + V
Sbjct: 1 AGAAMTAFGKFGGENGADANDLAHEAGAKAIAAALEPAGVAAGAVEEACLGQVLGAGEGQ 60
Query: 106 ----------------PVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPM 149
P +N C SGL+A+A I G + + G E M
Sbjct: 61 NCAQQAAMHAGGLQEAPAIGMNNLCGSGLRALALAMQLIAGGDANCILAGGFEKME---- 116
Query: 150 AWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGK 209
N K K + N R D A+ A AA G+
Sbjct: 117 -TSAENNAKEKHIDVLINKY---------------GMRACPDAFALAGQAGAEAAEKDGR 160
Query: 210 FKDEIIPVATKIVDPKTGDEKPVTISVDDGIR--PNTSVSELAKLKPVFKKDGTTTAGNS 267
FKDE K G + + D+ I+ S+ E+AKL+P F K+ TAGN+
Sbjct: 161 FKDEFAKFGVK------GRKGDIHSDADEYIQFGDEASLDEIAKLRPAFDKEDFLTAGNA 214
Query: 268 SQVSDGAGAVLLMKRSVAMRKGLPI-------LGVFRTFAAVGVDPA----IMGVGPAVA 316
++DGA A +LM + A + GL L + A+ D + G GP A
Sbjct: 215 CGLNDGAAAAILMSEAEAQKHGLQSKAREIQALEMITDMASTFEDKKVIKMVGGDGPIEA 274
Query: 317 IPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEK------------------I 358
A++ AGL + D+DL E ++AFA+ LGL PE I
Sbjct: 275 ARKALEKAGLGIGDLDLIEAHDAFAANACATNEALGLCPEGQGGALVDRGDNTYGGKSII 334
Query: 359 NVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDC---RFGVISMCIGTGMGAAAVFE 413
N NGGA+AIGHP+G +GA A L E+K G+ +CIG G GAA E
Sbjct: 335 NPNGGAIAIGHPIGASGAAICAELCFELKGEAGKRQGAGAGLALLCIGGGGGAAMCIE 392
>gnl|CDD|238201 cd00327, cond_enzymes, Condensing enzymes; Family of enzymes that
catalyze a (decarboxylating or non-decarboxylating)
Claisen-like condensation reaction. Members are share
strong structural similarity, and are involved in the
synthesis and degradation of fatty acids, and the
production of polyketides, a diverse group of natural
products.
Length = 254
Score = 79.0 bits (195), Expect = 1e-16
Identities = 43/160 (26%), Positives = 61/160 (38%), Gaps = 12/160 (7%)
Query: 264 AGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD----PAIMGVGPAVAIPA 319
DGA A ++ A+R+G + AA PA+ G G A A
Sbjct: 94 GSEEFVFGDGAAAAVVESEEHALRRGAHPQAEIVSTAATFDGASMVPAVSGEGLARAARK 153
Query: 320 AVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEK---INVNGGALAIGHPLGTTGA 376
A++ AGL DID E + LGLDP+ V+ + GHPLG G
Sbjct: 154 ALEGAGLTPSDIDYVEAHGTGTPIGDAVELALGLDPDGVRSPAVSATLIMTGHPLGAAGL 213
Query: 377 RCVATLLHEMKR-----RGRDCRFGVISMCIGTGMGAAAV 411
+ LL ++ R+ R ++ G AA V
Sbjct: 214 AILDELLLMLEHEFIPPTPREPRTVLLLGFGLGGTNAAVV 253
>gnl|CDD|238425 cd00829, SCP-x_thiolase, Thiolase domain associated with sterol
carrier protein (SCP)-x isoform and related proteins;
SCP-2 has multiple roles in intracellular lipid
circulation and metabolism. The N-terminal presequence
in the SCP-x isoform represents a peroxisomal
3-ketacyl-Coa thiolase specific for branched-chain acyl
CoAs, which is proteolytically cleaved from the sterol
carrier protein.
Length = 375
Score = 68.4 bits (168), Expect = 1e-12
Identities = 91/402 (22%), Positives = 141/402 (35%), Gaps = 108/402 (26%)
Query: 75 PDDLLAPVLKAVIEKTNVDPSEVGDIVVETV----------------------PVRTVNR 112
P +L A +A ++ ++P+++ +VV P V
Sbjct: 16 PLELAAEAARAALDDAGLEPADIDAVVVGNAAGGRFQSFPGALIAEYLGLLGKPATRVEA 75
Query: 113 QCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWE--GSVNPKVKAFEQAQNCLL 170
+SG AV AAAI +G D+ + G E M+ P E G + + L
Sbjct: 76 AGASGSAAVRAAAAAIASGLADVVLVVGAEKMSDVPTGDEAGGRASDLEWEGPEPPGGLT 135
Query: 171 PMGVTSENVA----HRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPV----ATKIV 222
P + + A HR+G TR++ + AV +HR AA A +F+ I + I
Sbjct: 136 PPALYA-LAARRYMHRYGTTREDLAKVAVKNHRNAARNPYA-QFRKPITVEDVLNSRMIA 193
Query: 223 DPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKR 282
DP + VSDGA AV+L
Sbjct: 194 DP-------------------------------------LRLLDCCPVSDGAAAVVLASE 216
Query: 283 SVAMRKGLP---ILGV-----FRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLF 334
A ILGV + + ++ +A A K AG+ DDID+
Sbjct: 217 ERARELTDRPVWILGVGAASDTPSLSERDDFLSLDAA--RLAARRAYKMAGITPDDIDVA 274
Query: 335 EINEAFASQ-FVYCRNKLGLDPE------------------KINVNGGALAIGHPLGTTG 375
E+ + F + + LG + +N +GG L+ GHPLG TG
Sbjct: 275 ELYDCFTIAELLALED-LGFCEKGEGGKLVREGDTAIGGDLPVNTSGGLLSKGHPLGATG 333
Query: 376 ARCVATLLHEMKRRG-----RDCRFGVISMCIGTGMGAAAVF 412
+ +++ R G+ IG G G+AAV
Sbjct: 334 LAQAVEAVRQLRGEAGARQVPGARVGLAHN-IG-GTGSAAVV 373
>gnl|CDD|235688 PRK06064, PRK06064, acetyl-CoA acetyltransferase; Provisional.
Length = 389
Score = 48.0 bits (115), Expect = 5e-06
Identities = 77/358 (21%), Positives = 124/358 (34%), Gaps = 103/358 (28%)
Query: 105 VPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT--VNPMA-----------W 151
+P V C+SG A+ A+ +G D+ + AG+E MT P A W
Sbjct: 76 IPATRVEAACASGGAALRQAYLAVASGEADVVLAAGVEKMTDVPTPDATEAIARAGDYEW 135
Query: 152 EGSVNPKVKAFEQAQNCLLPMGVTSENVA--------HRFGVTRKEQDQAAVDSHRKAAA 203
E G T + H++G T ++ AV +H +
Sbjct: 136 EEF-----------------FGATFPGLYALIARRYMHKYGTTEEDLALVAVKNHYNGSK 178
Query: 204 ATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTT 263
A +F+ E I+V+ + + V++ KL
Sbjct: 179 NPYA-QFQKE--------------------ITVEQVLN-SPPVADPLKLL---------- 206
Query: 264 AGNSSQVSDGAGAVLLMKRSVAMR---KGLPILGVFRT--FAAVGVDPAIMGVGPAV-AI 317
+ S ++DGA AV+L A + I + A+ + AV A
Sbjct: 207 --DCSPITDGAAAVILASEEKAKEYTDTPVWIKASGQASDTIALHDRKDFTTLDAAVVAA 264
Query: 318 PAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEK-------------------I 358
A K AG++ DID+ E+++ F + LG +K +
Sbjct: 265 EKAYKMAGIEPKDIDVAEVHDCFTIAEILAYEDLGF-AKKGEGGKLAREGQTYIGGDIPV 323
Query: 359 NVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGT-----GMGAAAV 411
N +GG A GHP+G TG ++ +++ R VI G G G AV
Sbjct: 324 NPSGGLKAKGHPVGATGVSQAVEIVWQLRGEAEKGRQQVIGAGYGLTHNVGGTGHTAV 381
>gnl|CDD|223381 COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid
metabolism / Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 412
Score = 47.6 bits (114), Expect = 6e-06
Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 20/121 (16%)
Query: 271 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 325
+GAGA++L + A+ +G I + PA G G A+ AA+ AG
Sbjct: 231 GEGAGALVLEELEHALARGAKIYAEIVGYGTTSDAYHITAPAPDGEGAIRAMRAALADAG 290
Query: 326 LQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 375
L +DID + E+ A + V G + + V+ GH LG G
Sbjct: 291 LTPEDIDYINAHGTSTPANDKAESLAIKRV-----FGEHAKSLPVSSTKSLTGHTLGAAG 345
Query: 376 A 376
A
Sbjct: 346 A 346
Score = 30.3 bits (69), Expect = 2.1
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 106 PVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLES 143
P T C++G A+ D I+ G D+ I G E+
Sbjct: 154 PNYTPVTACATGAHAIGDAVRLIRLGKADVVIAGGAEA 191
>gnl|CDD|181013 PRK07516, PRK07516, acetyl-CoA acetyltransferase; Provisional.
Length = 389
Score = 44.9 bits (107), Expect = 5e-05
Identities = 41/135 (30%), Positives = 53/135 (39%), Gaps = 32/135 (23%)
Query: 268 SQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-------VDPAIMGVGPAVAIPAA 320
S VSDGA A++L A + FR A V DP GP A A
Sbjct: 213 SLVSDGAAALVLADAETARALQRAV--RFRARAHVNDFLPLSRRDPLAFE-GPRRAWQRA 269
Query: 321 VKSAGLQLDDIDLFEINEAF--ASQFVYCRNKLGLDPE------------------KINV 360
+ AG+ LDD+ E ++ F A Y +GL P +N
Sbjct: 270 LAQAGVTLDDLSFVETHDCFTIAELIEY--EAMGLAPPGQGARAIREGWTAKDGKLPVNP 327
Query: 361 NGGALAIGHPLGTTG 375
+GG A GHP+G TG
Sbjct: 328 SGGLKAKGHPIGATG 342
>gnl|CDD|235771 PRK06289, PRK06289, acetyl-CoA acetyltransferase; Provisional.
Length = 403
Score = 40.8 bits (96), Expect = 0.001
Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 31/141 (21%)
Query: 268 SQVSDGAGAVLLMK----RSVAMRKGLP-ILGVFRTFAAVGVDPAIMG------VGPAV- 315
SQV+DG V+L R A + +P I G A +G++ + V P V
Sbjct: 220 SQVTDGGAGVVLASDAYLRDYADARPIPRIKGWGHRTAPLGLEQKLDRSAGDPYVLPHVR 279
Query: 316 -AIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPE------------------ 356
A+ A + AG+ LDD+D FE+++ F + +GL
Sbjct: 280 QAVLDAYRRAGVGLDDLDGFEVHDCFTPSEYLAIDHIGLTGPGESWKAIENGEIAIGGRL 339
Query: 357 KINVNGGALAIGHPLGTTGAR 377
IN +GG + GHP+G +G R
Sbjct: 340 PINPSGGLIGGGHPVGASGVR 360
Score = 29.7 bits (67), Expect = 3.4
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 114 CSSGLQAVADVAAAIKAGFYDIGIGAGLESM 144
C+SG A A ++AG YD+ + G+E M
Sbjct: 90 CASGSVATLAAMADLRAGRYDVALVVGVELM 120
>gnl|CDD|181327 PRK08256, PRK08256, lipid-transfer protein; Provisional.
Length = 391
Score = 40.3 bits (95), Expect = 0.001
Identities = 69/315 (21%), Positives = 117/315 (37%), Gaps = 76/315 (24%)
Query: 105 VPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT-----------VNPMAWEG 153
+P+ VN CS+G A+ A+++G D + G E M +P+
Sbjct: 71 IPIVNVNNNCSTGSTALFLARQAVRSGAADCALALGFEQMQPGALGSVWDDRPSPLERFD 130
Query: 154 SVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDE 213
+++ F+ A L G ++G T + + V + R AA A +F+DE
Sbjct: 131 KALAELQGFDPAPPALRMFGGAGREHMEKYGTTAETFAKIGVKARRHAANNPYA-QFRDE 189
Query: 214 IIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDG 273
+++D + L +L+ + G
Sbjct: 190 Y--------------------TLEDVLASPMIWGPLTRLQ-------------CCPPTCG 216
Query: 274 AGAVLLMKRSVAMRKGLP----ILG------VFRTFAAVGVDPAIMGVGPAVAIPAAV-K 322
A A ++ A + GL I+ TF + ++G A V +
Sbjct: 217 AAAAIVCSEEFARKHGLDRAVEIVAQAMTTDTPSTFDGRSM-IDLVGYDMTRAAAQQVYE 275
Query: 323 SAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPE----------------KINVN--GGA 364
AG+ +DID+ E+++ F++ + LGL PE + VN GG
Sbjct: 276 QAGIGPEDIDVVELHDCFSANELLTYEALGLCPEGEAEKFIDDGDNTYGGRWVVNPSGGL 335
Query: 365 LAIGHPLGTTG-ARC 378
L+ GHPLG TG A+C
Sbjct: 336 LSKGHPLGATGLAQC 350
>gnl|CDD|240424 PTZ00455, PTZ00455, 3-ketoacyl-CoA thiolase; Provisional.
Length = 438
Score = 40.3 bits (94), Expect = 0.001
Identities = 68/317 (21%), Positives = 113/317 (35%), Gaps = 60/317 (18%)
Query: 106 PVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQA 165
P V C+SG AV A+ AG DI + G+E T G + + +
Sbjct: 112 PAMRVEGACASGGLAVQSAWEALLAGTSDIALVVGVEVQTTVSARVGGDYLARAADYRRQ 171
Query: 166 QN-------CLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVA 218
+ CL A R ++ D+ R AA A A G K+ + +
Sbjct: 172 RKLDDFTFPCLF---------AKRMKYIQEHGHFTMEDTARVAAKAYANGN-KNPLAHMH 221
Query: 219 TKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVL 278
T+ + + + P +E KP + + SQVSDG ++
Sbjct: 222 TRKLSLEF-------CTGASDKNPKFLGNE--TYKPFLR------MTDCSQVSDGGAGLV 266
Query: 279 LMKRSVAMRKGL-----PILGVFRTFAAVG---VDP--AIMGVGPAVAIPAAVKSAGLQL 328
L + GL ++ + A G DP A A A+ AG++
Sbjct: 267 LASEEGLQKMGLSPNDSRLVEIKSLACASGNLYEDPPDATRMFTSRAAAQKALSMAGVKP 326
Query: 329 DDIDLFEINEAFASQFVYCRNKLGL-DPEK-----------------INVNGGALAIGHP 370
D+ + E+++ F + LG+ + +N GG L+ GHP
Sbjct: 327 SDLQVAEVHDCFTIAELLMYEALGIAEYGHAKDLIRNGATALEGRIPVNTGGGLLSFGHP 386
Query: 371 LGTTGARCVATLLHEMK 387
+G TG + + + +MK
Sbjct: 387 VGATGVKQIMEVYRQMK 403
>gnl|CDD|181173 PRK07937, PRK07937, lipid-transfer protein; Provisional.
Length = 352
Score = 40.1 bits (94), Expect = 0.002
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 270 VSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMG-----VGPAVAIPAAVKSA 324
++DGA AV+L A L + T ++ +G P+ A+ AA +
Sbjct: 204 ITDGAAAVVLAAGDRARE--LRERPAWITGIEHRIESPSLGARDLTRSPSTAL-AAEAAT 260
Query: 325 GLQLDDIDLFEINEAFASQFVYCRNKLGL-DPEKINVNGGALAIGHPLGTTG 375
G +D+ E++ F Q + R LGL D K+N +GGALA +P+ G
Sbjct: 261 GGDAGGVDVAELHAPFTHQELILREALGLGDKTKVNPSGGALA-ANPMFAAG 311
>gnl|CDD|238426 cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III
(KASIII) initiates the elongation in type II fatty acid
synthase systems. It is found in bacteria and plants.
Elongation of fatty acids in the type II systems occurs
by Claisen condensation of malonyl-acyl carrier protein
(ACP) with acyl-ACP. KASIII initiates this process by
specifically using acetyl-CoA over acyl-CoA.
Length = 320
Score = 39.4 bits (93), Expect = 0.002
Identities = 45/161 (27%), Positives = 63/161 (39%), Gaps = 41/161 (25%)
Query: 271 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAV------AIPAAVKS- 323
SDG+GA LL + R A G DP ++ G V +P +++
Sbjct: 181 SDGSGADLLTIPAGGSR--------SPFEDAEGGDPYLVMDGREVFKFAVRLMPESIEEA 232
Query: 324 ---AGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGT 373
AGL DDID F I EA A +LGL EK+ VN G
Sbjct: 233 LEKAGLTPDDIDWFVPHQANLRIIEAVAK-------RLGLPEEKVVVN------LDRYGN 279
Query: 374 TGARCVATLLHEMKRRGRDCRFGVISMC-IGTGM--GAAAV 411
T A + L E G+ + ++ + G G+ GAA +
Sbjct: 280 TSAASIPLALDEAIEEGKLKKGDLVLLLGFGAGLTWGAALL 320
>gnl|CDD|238429 cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty
acids into a large variety of different products, called
polyketides, by successive decarboxylating Claisen
condensations. PKSs can be divided into 2 groups,
modular type I PKSs consisting of one or more large
multifunctional proteins and iterative type II PKSs,
complexes of several monofunctional subunits.
Length = 421
Score = 38.7 bits (91), Expect = 0.005
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Query: 271 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAV--GVDPAIM---GVGPAVAIPAAVKSAG 325
+G G V+L + S A+R G I V R A G I G A I A AG
Sbjct: 234 GEGVGVVVLKRLSDALRDGDRIYAVIRGSAVNQDGRTKGITAPSGEAQAALIRRAYARAG 293
Query: 326 LQLDDIDLFE 335
+ DID E
Sbjct: 294 VDPSDIDYVE 303
>gnl|CDD|238430 cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP)
synthase (KAS), type I and II. KASs are responsible for
the elongation steps in fatty acid biosynthesis. KASIII
catalyses the initial condensation and KAS I and II
catalyze further elongation steps by Claisen
condensation of malonyl-acyl carrier protein (ACP) with
acyl-ACP.
Length = 406
Score = 38.7 bits (91), Expect = 0.005
Identities = 39/131 (29%), Positives = 53/131 (40%), Gaps = 25/131 (19%)
Query: 271 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 325
+GAG ++L A +G I + A P G G A A+ AA+ AG
Sbjct: 230 GEGAGVLVLESLEHAKARGAKIYAEILGYGASSDAYHITAPDPDGEGAARAMRAALADAG 289
Query: 326 LQLDDIDLFEIN------------EAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGT 373
L +DID IN E+ A + V G +K+ V+ GH LG
Sbjct: 290 LSPEDIDY--INAHGTSTPLNDAAESKAIKRV-----FGEHAKKVPVSSTKSMTGHLLGA 342
Query: 374 TGA-RCVATLL 383
GA +ATLL
Sbjct: 343 AGAVEAIATLL 353
Score = 30.2 bits (69), Expect = 2.3
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 106 PVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 153
P TV+ C+SG A+ D A I+ G D+ I G E++ + P+ G
Sbjct: 153 PNYTVSTACASGAHAIGDAARLIRLGRADVVIAGGAEAL-ITPLTLAG 199
>gnl|CDD|117118 pfam08541, ACP_syn_III_C, 3-Oxoacyl-[acyl-carrier-protein (ACP)]
synthase III C terminal. This domain is found on
3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
EC:2.3.1.41, the enzyme responsible for initiating the
chain of reactions of the fatty acid synthase in plants
and bacteria.
Length = 90
Score = 35.5 bits (83), Expect = 0.005
Identities = 31/100 (31%), Positives = 40/100 (40%), Gaps = 24/100 (24%)
Query: 324 AGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 376
AGL DDID F I +A A +LGL PEK+ VN + G T A
Sbjct: 4 AGLTPDDIDWFVPHQANLRIIDAVA-------KRLGLPPEKVVVN-----LDR-YGNTSA 50
Query: 377 RCVATLLHEMKRRGRDCRFGVISMCIGTGMG---AAAVFE 413
+ L E G+ ++ + G G G AAV
Sbjct: 51 ASIPLALDEAVEEGKLKPGDLVLLV-GFGAGLTWGAAVLR 89
>gnl|CDD|238424 cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a
subclass of decarboxylating condensing enzymes,
including beta-ketoacyl [ACP] synthase, type I and II
and polyketide synthases.They are characterized by the
utlization of acyl carrier protein (ACP) thioesters as
primer substrates, as well as the nature of their active
site residues.
Length = 407
Score = 38.2 bits (89), Expect = 0.006
Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 13/130 (10%)
Query: 271 SDGAGAVLLMKRSVAMRKGLPILG--VFRTFAAVGVDPAIMGVGPAV--AIPAAVKSAGL 326
++GAG ++L + +A+ +G PI G G ++ G + AI A+ AGL
Sbjct: 230 AEGAGVLVLERAELALARGAPIYGRVAGTASTTDGAGRSVPAGGKGIARAIRTALAKAGL 289
Query: 327 QLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALA-------IGHPLGTTGARCV 379
LDD+D+ I+ S + E G L GH G GA +
Sbjct: 290 SLDDLDV--ISAHGTSTPANDVAESRAIAEVAGALGAPLPVTAQKALFGHSKGAAGALQL 347
Query: 380 ATLLHEMKRR 389
L ++
Sbjct: 348 IGALQSLEHG 357
Score = 28.9 bits (65), Expect = 6.2
Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 8/106 (7%)
Query: 54 IVAAYRTALCKSKRGG---FKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIV-----VETV 105
V + G F V V K + P+ V V
Sbjct: 94 EVHPSEVGVVVGSGMGGLRFLRRGGKLDARAVNPYVSPKWMLSPNTVAGWVNILLLSSHG 153
Query: 106 PVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAW 151
P++T C++ L+A+ AI++G DI + G+E ++
Sbjct: 154 PIKTPVGACATALEALDLAVEAIRSGKADIVVVGGVEDPLEEGLSG 199
>gnl|CDD|183606 PRK12578, PRK12578, acetyl-CoA acetyltransferase; Provisional.
Length = 385
Score = 37.9 bits (88), Expect = 0.008
Identities = 65/302 (21%), Positives = 108/302 (35%), Gaps = 67/302 (22%)
Query: 105 VPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESM----TVNPMAWEGSVNPKVK 160
VP+R V C++GL A A+ +G D+ I G++ M T +A G
Sbjct: 74 VPLR-VEAMCATGLAASLTAYTAVASGLVDMAIAVGVDKMTEVDTSTSLAIGGRGGNYQW 132
Query: 161 AFEQAQNCLLPMGVTSENVAH--RFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVA 218
+ P H +G T ++ +V +H+ A
Sbjct: 133 EYHF-YGTTFPTYYALYATRHMAVYGTTEEQMALVSVKAHKYGA---------------- 175
Query: 219 TKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVL 278
++PK +KPVT V++ ++ +S KL +S +SDG+ +
Sbjct: 176 ---MNPKAHFQKPVT--VEEVLKSRA-ISWPIKLL------------DSCPISDGSATAI 217
Query: 279 LMKRSVAMRKGL--PI----LGVFRTFAAVGVDPAIMGVGPAV-AIPAAVKSAGLQLDDI 331
+ P+ +G +A V +G A A A + +DI
Sbjct: 218 FASEEKVKELKIDSPVWITGIGYANDYAYVARRGEWVGFKATQLAARQAYNMAKVTPNDI 277
Query: 332 DLFEINEAFASQFVYCRNKLGL-------------DPEK-----INVNGGALAIGHPLGT 373
++ +++AF + LG EK +N+ GG A GHPLG
Sbjct: 278 EVATVHDAFTIAEIMGYEDLGFTEKGKGGKFIEEGQSEKGGKVGVNLFGGLKAKGHPLGA 337
Query: 374 TG 375
TG
Sbjct: 338 TG 339
>gnl|CDD|223409 COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein].
Length = 323
Score = 36.8 bits (86), Expect = 0.015
Identities = 40/152 (26%), Positives = 51/152 (33%), Gaps = 44/152 (28%)
Query: 271 SDGAGAVLLMK-------RSVAMR---KGLPIL----GVFRTFAAVGVDPAIMGVGPAV- 315
DGAGAV+L + +L G T ++ G V
Sbjct: 159 GDGAGAVVLEATEDDNGILDTDLGSDGSQGDLLYLPGGGSATPKEESGGGLLVMDGREVF 218
Query: 316 --AIPAAVKS-------AGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKIN 359
A+ A K+ AGL +DID F I EA A KLG+ EK+
Sbjct: 219 KFAVRAMPKAIEEVLEKAGLTPEDIDWFVPHQANLRIIEAIA-------KKLGIPEEKVV 271
Query: 360 VNGGALAIGHPLGTTGARCVATLLHEMKRRGR 391
V G T A + L E R GR
Sbjct: 272 VT------VDKYGNTSAASIPLALDEALREGR 297
>gnl|CDD|235785 PRK06365, PRK06365, acetyl-CoA acetyltransferase; Provisional.
Length = 430
Score = 36.0 bits (83), Expect = 0.034
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 20/90 (22%)
Query: 320 AVKSAGLQ--LDDIDLFEINEAFASQFVYCRNKLGL----------------DPEKINVN 361
A + AG+ L+D+DL E+++A+ S + LGL P K+ VN
Sbjct: 302 AYEMAGITDPLNDLDLIELHDAYTSSEIQTYEDLGLCKYGEGGQFIESGKPELPGKLPVN 361
Query: 362 --GGALAIGHPLGTTGARCVATLLHEMKRR 389
GG LA GH +G TG + +++ R
Sbjct: 362 PSGGLLAAGHAVGATGIMQAVFMFWQLQGR 391
>gnl|CDD|235987 PRK07314, PRK07314, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 411
Score = 35.1 bits (82), Expect = 0.056
Identities = 33/120 (27%), Positives = 47/120 (39%), Gaps = 20/120 (16%)
Query: 272 DGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAGL 326
+GAG ++L + A +G I + G PA G G A A+ A+K AG+
Sbjct: 232 EGAGILVLEELEHAKARGAKIYAEVVGYGMTGDAYHMTAPAPDGEGAARAMKLALKDAGI 291
Query: 327 QLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 376
+DID + E A + V G K+ V+ GH LG GA
Sbjct: 292 NPEDIDYINAHGTSTPAGDKAETQAIKRV-----FGEHAYKVAVSSTKSMTGHLLGAAGA 346
Score = 30.5 bits (70), Expect = 1.8
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 106 PVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMA 150
P ++ C++G A+ D A I G D+ + G E+ + P+
Sbjct: 154 PNHSIVTACATGAHAIGDAARLIAYGDADVMVAGGAEA-AITPLG 197
>gnl|CDD|200247 TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II.
3-oxoacyl-[acyl-carrier-protein] synthase 2 (KAS-II,
FabF) is involved in the condensation step of fatty acid
biosynthesis in which the malonyl donor group is
decarboxylated and the resulting carbanion used to
attack and extend the acyl group attached to the acyl
carrier protein. Most genomes encoding fatty acid
biosynthesis contain a number of condensing enzymes,
often of all three types: 1, 2 and 3. Synthase 2 is
mechanistically related to synthase 1 (KAS-I, FabB)
containing a number of absolutely conserved catalytic
residues in common. This model is based primarily on
genes which are found in apparent operons with other
essential genes of fatty acid biosynthesis
(GenProp0681). The large gap between the trusted cutoff
and the noise cutoff contains many genes which are not
found adjacent to genes of the fatty acid pathway in
genomes that often also contain a better hit to this
model. These genes may be involved in other processes
such as polyketide biosyntheses. Some genomes contain
more than one above-trusted hit to this model which may
result from recent paralogous expansions. Second hits to
this model which are not next to other fatty acid
biosynthesis genes may be involved in other processes.
FabB sequences should fall well below the noise cutoff
of this model [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 407
Score = 33.2 bits (77), Expect = 0.27
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 16/89 (17%)
Query: 306 PAIMGVGPAVAIPAAVKSAGLQLDDID----------LFEINEAFASQFVYCRNKLGLDP 355
PA G G A A+ AA+K AG+ +D+D L + E A + V G
Sbjct: 270 PAPEGEGAARAMRAALKDAGINPEDVDYINAHGTSTPLGDKAETKAIKRV-----FGDHA 324
Query: 356 EKINVNGGALAIGHPLGTTGA-RCVATLL 383
K+ V+ GH LG GA + T+L
Sbjct: 325 YKLAVSSTKSMTGHLLGAAGAIEAIFTVL 353
Score = 29.0 bits (66), Expect = 4.8
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 114 CSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMA 150
C++G A+ D I+ G D+ I G E+ + P+
Sbjct: 161 CATGTHAIGDAFRLIQRGDADVMIAGGAEA-AITPLG 196
>gnl|CDD|235653 PRK05952, PRK05952, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 381
Score = 32.3 bits (74), Expect = 0.54
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 18/119 (15%)
Query: 275 GAVLLMK-RSVAMRKGLPILGVFRTF-----AAVGVDPAIMGVGPAVAIPAAVKSAGLQL 328
GA+L+++ +A ++G I G F A P G AI + +GL
Sbjct: 212 GAILVLESAELAQKRGAKIYGQILGFGLTCDAYHMSAPEPDGKSAIAAIQQCLARSGLTP 271
Query: 329 DDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVA 380
+DID +N+ + + L P ++ V+ A GH LG +GA VA
Sbjct: 272 EDIDYIHAHGTATRLNDQREANLIQ-----ALFPHRVAVSSTKGATGHTLGASGALGVA 325
>gnl|CDD|214836 smart00825, PKS_KS, Beta-ketoacyl synthase. The structure of
beta-ketoacyl synthase is similar to that of the
thiolase family and also chalcone synthase. The active
site of beta-ketoacyl synthase is located between the N
and C-terminal domains.
Length = 298
Score = 31.9 bits (74), Expect = 0.56
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 271 SDGAGAVLLMKRSVAMRKGLPILGVFR 297
+G G V+L + S A+R G PIL V R
Sbjct: 161 GEGVGVVVLKRLSDALRDGDPILAVIR 187
>gnl|CDD|180373 PRK06059, PRK06059, lipid-transfer protein; Provisional.
Length = 399
Score = 32.0 bits (73), Expect = 0.66
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 105 VPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESM 144
PV + C+SG QA+ A I AG D+ + G ++
Sbjct: 76 APVSSSYAACASGSQALQSARAQILAGLCDVALVVGADTT 115
Score = 30.1 bits (68), Expect = 2.4
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 21/88 (23%)
Query: 270 VSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAI---------MGVGPAVAIPAA 320
SDGA A+++ +S A R + GV A V P + A+PA
Sbjct: 211 TSDGAAALIVASKSFARRHLGSVAGVPSVRAISTVTPRYPQHLPELPDIATDSTAAVPAP 270
Query: 321 VKS------------AGLQLDDIDLFEI 336
+ AG+ +D+ L E+
Sbjct: 271 ERVFKDQILDAAYAEAGIGPEDLSLAEV 298
>gnl|CDD|221738 pfam12727, PBP_like, PBP superfamily domain. This family belongs
to the periplasmic binding domain superfamily. It is
often associated with a helix-turn-helix domain.
Length = 193
Score = 31.0 bits (71), Expect = 0.70
Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 25/58 (43%)
Query: 106 PVRTVNRQCSSGLQAVAD-------------------------VAAAIKAGFYDIGIG 138
+R VNRQ SG + + D VAAA+ +G D G+G
Sbjct: 93 GIRFVNRQRGSGTRVLLDELLRKAGISPEDINGYAREVRSHLAVAAAVASGKADAGLG 150
>gnl|CDD|236475 PRK09352, PRK09352, 3-oxoacyl-(acyl carrier protein) synthase III;
Reviewed.
Length = 319
Score = 31.6 bits (73), Expect = 0.78
Identities = 29/104 (27%), Positives = 39/104 (37%), Gaps = 30/104 (28%)
Query: 295 VFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYC 347
VF+ FA + A+++AGL +DID I +A A
Sbjct: 213 VFK-FAVRELAKVAR---------EALEAAGLTPEDIDWLVPHQANLRIIDATA------ 256
Query: 348 RNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGR 391
KLGL EK+ V + G T A + L E R GR
Sbjct: 257 -KKLGLPMEKVVVT-----VDK-YGNTSAASIPLALDEAVRDGR 293
>gnl|CDD|179591 PRK03545, PRK03545, putative arabinose transporter; Provisional.
Length = 390
Score = 31.4 bits (72), Expect = 0.88
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 122 ADVAAAIKAGFYDIGIGAG 140
DVA A+ +G ++IGIGAG
Sbjct: 327 TDVAMALFSGIFNIGIGAG 345
>gnl|CDD|235715 PRK06147, PRK06147, 3-oxoacyl-(acyl carrier protein) synthase;
Validated.
Length = 348
Score = 31.5 bits (72), Expect = 0.90
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 14/72 (19%)
Query: 272 DGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPA---------IMGVGPAVAIPAAVK 322
+ A AVLL + + GLP+LG+ +G +PA + G G AI AA+
Sbjct: 191 EAAAAVLLGRPAGGEAPGLPLLGL-----GLGREPAPVGESEDLPLRGDGLTQAIRAALA 245
Query: 323 SAGLQLDDIDLF 334
AG L+D+D
Sbjct: 246 EAGCGLEDMDYR 257
>gnl|CDD|180433 PRK06157, PRK06157, acetyl-CoA acetyltransferase; Validated.
Length = 398
Score = 30.8 bits (70), Expect = 1.3
Identities = 69/334 (20%), Positives = 111/334 (33%), Gaps = 107/334 (32%)
Query: 105 VPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESM--------------TVNPMA 150
+PV V C++G +A A+ +G YDI + G+E + T+ M
Sbjct: 79 IPVTRVENFCATGSEAFRGAVYAVASGAYDIALALGVEKLKDTGYGGLPVANPGTLADMT 138
Query: 151 WEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQA----AVDSHRKAAAATA 206
P F Q + A ++GV+R++ +A +V SH A
Sbjct: 139 MPNVTAP--GNFAQLASA----------YAAKYGVSREDLKRAMAHVSVKSHANGA---- 182
Query: 207 AGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGN 266
+PK K VT E P+ AG
Sbjct: 183 ---------------RNPKAHLRKAVTE-------------EQVLKAPMI-------AGP 207
Query: 267 -----SSQVSDGAGAVLLMKRSVAMR-KGLPILGVFRTFAAVGVDPAIMGVG------PA 314
VSDGA A ++ +A + V AV + G P
Sbjct: 208 LGLFDCCGVSDGAAAAIVTTPEIARALGKKDPVYVKALQLAVSNGWELQYNGWDGSYFPT 267
Query: 315 VAIPA--AVKSAGLQ--LDDIDLFEINEAFASQFVYCRNKLGLDPE-------------- 356
I A A + AG+ +++ + E+++ F+ + LGL
Sbjct: 268 TRIAARKAYREAGITDPREELSMAEVHDCFSITELVTMEDLGLSERGQAWRDVLDGFFDA 327
Query: 357 ----KINVNGGALAIGHPLGTTGARCVATLLHEM 386
++GG GHP+G +G R +L+EM
Sbjct: 328 DGGLPCQIDGGLKCFGHPIGASGLR----MLYEM 357
>gnl|CDD|225620 COG3078, COG3078, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 169
Score = 28.7 bits (64), Expect = 4.5
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 186 TRKEQDQAAVDSHRK------AAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDG 239
TR+E D A D R+ A+ + +G ++ + DP+ G +KP+ + V +
Sbjct: 22 TREELDAEARDRKRQKKRKGLASGSRHSGGNENSGNKQQNQKKDPRIGSKKPIPLGVTEK 81
Query: 240 I-RPNTSVSELAKLKP 254
+ + + SE KL P
Sbjct: 82 VTKQHKPKSEKPKLSP 97
>gnl|CDD|234351 TIGR03773, anch_rpt_wall, putative ABC transporter-associated
repeat protein. Members of this protein family occur in
genomes that contain a three-gene ABC transporter operon
associated with the presence of domain TIGR03769. That
domain occurs as a single-copy insert in the
substrate-binding protein, and occurs in two or more
copies in members of this protein family. Members of
this family typically are encoded adjacent to the said
transporter operon and may serve as a substrate
receptor.
Length = 513
Score = 29.2 bits (65), Expect = 4.6
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 205 TAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTA 264
+ G +K ++ AT K D +T +V D P +V L+ P G
Sbjct: 408 SKPGTYKLQVTQSATTTNGKKASDTTTLTFAVGDNNDPVGAVGPLSASTPTDGAPGGKGC 467
Query: 265 GNSSQ--VSDGAGA 276
+++ G A
Sbjct: 468 ELAAKGAEGSGKKA 481
>gnl|CDD|106976 PHA00667, PHA00667, hypothetical protein.
Length = 158
Score = 28.5 bits (62), Expect = 5.3
Identities = 8/53 (15%), Positives = 12/53 (22%)
Query: 188 KEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGI 240
+ AA A + + D GD P D +
Sbjct: 61 AATAPTPPTAEVGAADAPESKAENSAPVQAGDAGQDAAAGDAAPTYQDTADAV 113
>gnl|CDD|235781 PRK06333, PRK06333, 3-oxoacyl-(acyl carrier protein) synthase II;
Reviewed.
Length = 424
Score = 28.8 bits (65), Expect = 5.5
Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 114 CSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 153
C++G+QA+ D A I++G D+ + G E+ ++ ++ G
Sbjct: 173 CAAGVQAIGDAARLIRSGEADVAVCGGTEA-AIDRVSLAG 211
>gnl|CDD|180839 PRK07103, PRK07103, polyketide beta-ketoacyl:acyl carrier protein
synthase; Validated.
Length = 410
Score = 28.8 bits (65), Expect = 5.5
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 273 GAGAVLLMKRSVAMRKGLPILGVFRTFAAV-----GVDPAIMGVGPAVAIPAAVKSAGLQ 327
GAV+L A R+G ++ G DP++ G I AA++ AGL
Sbjct: 240 ACGAVVLESAESARRRGARPYAKLLGWSMRLDANRGPDPSL--EGEMRVIRAALRRAGLG 297
Query: 328 LDDID 332
+DID
Sbjct: 298 PEDID 302
>gnl|CDD|238421 cd00825, decarbox_cond_enzymes, decarboxylating condensing enzymes;
Family of enzymes that catalyze the formation of a new
carbon-carbon bond by a decarboxylating Claisen-like
condensation reaction. Members are involved in the
synthesis of fatty acids and polyketides, a diverse
group of natural products. Both pathways are an
iterative series of additions of small carbon units,
usually acetate, to a nascent acyl group. There are 2
classes of decarboxylating condensing enzymes, which can
be distinguished by sequence similarity, type of active
site residues and type of primer units (acetyl CoA or
acyl carrier protein (ACP) linked units).
Length = 332
Score = 28.8 bits (64), Expect = 5.7
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 272 DGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV------GPAVAIPAAVKSAG 325
DGAGA+++ + A+ +G I AA +D A MG G A A A+ AG
Sbjct: 161 DGAGALVVEELEHALARGAHIYAEIVGTAA-TIDGAGMGAFAPSAEGLARAAKEALAVAG 219
Query: 326 LQLDDIDLFE 335
L + DID
Sbjct: 220 LTVWDIDYLV 229
>gnl|CDD|236374 PRK09077, PRK09077, L-aspartate oxidase; Provisional.
Length = 536
Score = 29.1 bits (66), Expect = 5.8
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 384 HEMKRRGRDCRFGVIS 399
HEMKR G DC + IS
Sbjct: 298 HEMKRLGADCVYLDIS 313
>gnl|CDD|180434 PRK06158, PRK06158, thiolase; Provisional.
Length = 384
Score = 28.8 bits (65), Expect = 5.9
Identities = 35/129 (27%), Positives = 53/129 (41%), Gaps = 33/129 (25%)
Query: 270 VSDGAGAVLLMKRSVAM---RKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKS--- 323
V+DGAGAV++++ A R + +LG AA + P + + AA +S
Sbjct: 208 VTDGAGAVVMVRADRARDLPRPPVYVLG-----AAAATWHRQISSMPDLTVTAAAESGPR 262
Query: 324 ----AGLQLDDIDLFEINEAFASQFVYCRNKLGLDPE------------------KINVN 361
AGL DID+ E+ +AF + LG + +N N
Sbjct: 263 AFAMAGLTPADIDVVELYDAFTINTILFLEDLGFCAKGEGGAFVEGGRIAPGGRLPVNTN 322
Query: 362 GGALAIGHP 370
GG L+ HP
Sbjct: 323 GGGLSCVHP 331
>gnl|CDD|225858 COG3321, COG3321, Polyketide synthase modules and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 1061
Score = 29.0 bits (65), Expect = 6.3
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 271 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV----GPAVA--IPAAVKSA 324
+GAG V+L + S A R G I V R +AV D G+ A A I A+ A
Sbjct: 238 GEGAGVVVLKRLSDAERDGDRIYAVIR-GSAVNQDGRSNGLTAPNLEAQADVIREALADA 296
Query: 325 GLQLDDIDLFE 335
G+ + E
Sbjct: 297 GIDPATVQYVE 307
>gnl|CDD|240032 cd04676, Nudix_Hydrolase_17, Members of the Nudix hydrolase
superfamily catalyze the hydrolysis of NUcleoside
DIphosphates linked to other moieties, X. Enzymes
belonging to this superfamily require a divalent cation,
such as Mg2+ or Mn2+, for their activity and contain a
highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V), which functions
as a metal binding and catalytic site. Substrates of
nudix hydrolases include intact and oxidatively damaged
nucleoside triphosphates, dinucleoside polyphosphates,
nucleotide-sugars and dinucleotide enzymes. These
substrates are metabolites or cell signaling molecules
that require regulation during different stages of the
cell cycle or during periods of stress. In general, the
role of the nudix hydrolase is to sanitize the
nucleotide pools and to maintain cell viability, thereby
serving as surveillance & "house-cleaning" enzymes.
Substrate specificity is used to define families within
the superfamily. Differences in substrate specificity
are determined by the N-terminal extension or by
residues in variable loop regions. Mechanistically,
substrate hydrolysis occurs by a nucleophilic
substitution reaction, with variation in the numbers and
roles of divalent cations required.
Length = 129
Score = 27.3 bits (61), Expect = 7.8
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 270 VSDGAGAVLLMKRSVAMRKGLP 291
V D G VLL++RS LP
Sbjct: 9 VRDDEGRVLLIRRSDNGLWALP 30
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.380
Gapped
Lambda K H
0.267 0.0940 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,279,336
Number of extensions: 2209568
Number of successful extensions: 2726
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2499
Number of HSP's successfully gapped: 116
Length of query: 438
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 338
Effective length of database: 6,502,202
Effective search space: 2197744276
Effective search space used: 2197744276
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.5 bits)