RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 013708
(438 letters)
>2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty
acid metabolism, oxylipin biosynthesis, plant lipid
metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A
2c7z_A 2wua_A
Length = 442
Score = 672 bits (1736), Expect = 0.0
Identities = 358/439 (81%), Positives = 385/439 (87%), Gaps = 24/439 (5%)
Query: 22 SHNYESILSASACAAGDSAAYHRTSVYGDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAP 81
+H++ + AGDSAAY RTS+YGDDVVIVAA+RT LCKSKRG FKDTYPDDLLAP
Sbjct: 2 AHHHHHHVDDDDKMAGDSAAYQRTSLYGDDVVIVAAHRTPLCKSKRGNFKDTYPDDLLAP 61
Query: 82 VLKAVIEKTNVDPSEVGDIVV------------------------ETVPVRTVNRQCSSG 117
VL+A+IEKTN++PSEVGDIVV ETV VRTVNRQCSSG
Sbjct: 62 VLRALIEKTNLNPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQCSSG 121
Query: 118 LQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSE 177
LQAVADVAAAIKAGFYDIGIGAGLESMT NPMAWEGSVNP VK F QAQNCLLPMGVTSE
Sbjct: 122 LQAVADVAAAIKAGFYDIGIGAGLESMTTNPMAWEGSVNPAVKKFAQAQNCLLPMGVTSE 181
Query: 178 NVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVD 237
NVA RFGV+R+EQDQAAVDSHRKAAAATAAGKFKDEIIPV TK+VDPKTGDEKP+T+SVD
Sbjct: 182 NVAQRFGVSRQEQDQAAVDSHRKAAAATAAGKFKDEIIPVKTKLVDPKTGDEKPITVSVD 241
Query: 238 DGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFR 297
DGIRP T+++ L KLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAM+KGLP+LGVFR
Sbjct: 242 DGIRPTTTLASLGKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMQKGLPVLGVFR 301
Query: 298 TFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEK 357
TFAAVGVDPAIMG+GPAVAIPAAVK+AGL+LDDIDLFEINEAFASQFVYCRNKLGLDPEK
Sbjct: 302 TFAAVGVDPAIMGIGPAVAIPAAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDPEK 361
Query: 358 INVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFERGDC 417
INVNGGA+AIGHPLG TGARCVATLLHEMKRRG+DCRFGV+SMCIGTGMGAAAVFERGD
Sbjct: 362 INVNGGAMAIGHPLGATGARCVATLLHEMKRRGKDCRFGVVSMCIGTGMGAAAVFERGDG 421
Query: 418 ADELCNVRKVESNNFLSKD 436
DEL N RKVE+ LSKD
Sbjct: 422 VDELRNARKVEAQGLLSKD 440
>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism,
structural genomics, structural genom consortium, SGC,
transferase; 2.55A {Homo sapiens}
Length = 418
Score = 611 bits (1578), Expect = 0.0
Identities = 222/427 (51%), Positives = 291/427 (68%), Gaps = 34/427 (7%)
Query: 12 LEHLRPSNSSSHNYESILSASACAAGDSAAYHRTSVYGDDVVIVAAYRTALCKSKRGGFK 71
+ H +S L + A SA DVV+V RTA+C++ RGGFK
Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMAPQASA---------ADVVVVHGRRTAICRAGRGGFK 51
Query: 72 DTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV-----------------------ETVPVR 108
DT PD+LL+ V+ AV++ N+ P ++GDI V ETVP+
Sbjct: 52 DTTPDELLSAVMTAVLKDVNLRPEQLGDICVGNVLQPGAGAIMARIAQFLSDIPETVPLS 111
Query: 109 TVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEGSVNPKVKAFEQAQNC 168
TVNRQCSSGLQAVA +A I+ G YDIG+ G+ESM++ G++ ++ E+A++C
Sbjct: 112 TVNRQCSSGLQAVASIAGGIRNGSYDIGMACGVESMSLADRGNPGNITSRLMEKEKARDC 171
Query: 169 LLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGD 228
L+PMG+TSENVA RFG++R++QD A+ S +KAA A + G F+ EI+PV T + D K G
Sbjct: 172 LIPMGITSENVAERFGISREKQDTFALASQQKAARAQSKGCFQAEIVPVTTTVHDDK-GT 230
Query: 229 EKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRK 288
++ +T++ D+GIRP+T++ LAKLKP FKKDG+TTAGNSSQVSDGA A+LL +RS A
Sbjct: 231 KRSITVTQDEGIRPSTTMEGLAKLKPAFKKDGSTTAGNSSQVSDGAAAILLARRSKAEEL 290
Query: 289 GLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCR 348
GLPILGV R++A VGV P IMG+GPA AIP A++ AGL + D+D+FEINEAFASQ YC
Sbjct: 291 GLPILGVLRSYAVVGVPPDIMGIGPAYAIPVALQKAGLTVSDVDIFEINEAFASQAAYCV 350
Query: 349 NKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGA 408
KL L PEK+N GGA+A+GHPLG TGAR V TLL+E+KRRG+ +GV+SMCIGTGMGA
Sbjct: 351 EKLRLPPEKVNPLGGAVALGHPLGCTGARQVITLLNELKRRGKR-AYGVVSMCIGTGMGA 409
Query: 409 AAVFERG 415
AAVFE
Sbjct: 410 AAVFEYP 416
>1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A
{Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB:
1pxt_A
Length = 393
Score = 569 bits (1470), Expect = 0.0
Identities = 178/396 (44%), Positives = 240/396 (60%), Gaps = 44/396 (11%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEK----TNVDPSEVGDIVV--- 102
+DVVIVAA R+A+ K +G FKD D LL L I + D + + ++
Sbjct: 10 EDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNV 69
Query: 103 --------------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLE 142
+ P +NRQCSSGL AV D+A IK G DIG+ G+E
Sbjct: 70 LNVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVE 129
Query: 143 SMTVNPMA---WEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHR 199
SMT N + +++ +A+ CL+PMG+T+ENVA F ++RK+QD+ A +S++
Sbjct: 130 SMTNNYKNVNPLGMISSEELQKNREAKKCLIPMGITNENVAANFKISRKDQDEFAANSYQ 189
Query: 200 KAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKD 259
KA A G F+DEI+P+ D+G RPN + L+ ++P F KD
Sbjct: 190 KAYKAKNEGLFEDEILPIKLP---------DGSICQSDEGPRPNVTAESLSSIRPAFIKD 240
Query: 260 -GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIP 318
GTTTAGN+SQVSDG VLL +RSVA + LP+LG + F VGV P IMGVGPA AIP
Sbjct: 241 RGTTTAGNASQVSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIMGVGPAYAIP 300
Query: 319 AAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARC 378
+++ GLQ+ DID+FEINEAFA+Q +YC +KLG+D K+N GGA+A+GHPLG TGAR
Sbjct: 301 KVLEATGLQVQDIDIFEINEAFAAQALYCIHKLGIDLNKVNPRGGAIALGHPLGCTGARQ 360
Query: 379 VATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
VAT+L E+K+ + GV+SMCIGTGMGAAA+F +
Sbjct: 361 VATILRELKKD----QIGVVSMCIGTGMGAAAIFIK 392
>3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid,
IDP01071, acyltransferase, cytoplasm, fatty acid
metabolism; 1.70A {Salmonella typhimurium}
Length = 387
Score = 461 bits (1190), Expect = e-162
Identities = 154/393 (39%), Positives = 214/393 (54%), Gaps = 38/393 (9%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKT-NVDPSEVGDIVV------- 102
VVIV A RT + +SK G F++ +DL A ++++++ + ++ + + DI
Sbjct: 3 QVVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPSLTAATLDDIYWGCVQQTL 62
Query: 103 -----------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 145
+VP TVNR C S +QA+ D A I G + + G+E M
Sbjct: 63 EQGFNIARNAALLAEIPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQVCLVGGVEHMG 122
Query: 146 VNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAAT 205
PM+ +P + MG+T+E ++ G++R+ QDQ A SH +A AAT
Sbjct: 123 HVPMSHGVDFHPGLS--RNVAKAAGMMGLTAEMLSRLHGISREMQDQFAARSHARAWAAT 180
Query: 206 AAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKK-DGTTTA 264
+G FK EIIP D + D+ IRP T+V L+ L+P F GT TA
Sbjct: 181 QSGAFKTEIIPTGGH-----DADGVLKQFNYDEVIRPETTVEALSTLRPAFDPVSGTVTA 235
Query: 265 GNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSA 324
G SS +SDGA A+L+M S A GL R+ A VG DP+IMG GP A A+K A
Sbjct: 236 GTSSALSDGAAAMLVMSESRARELGLKPRARIRSMAVVGCDPSIMGYGPVPASKLALKKA 295
Query: 325 GLQLDDIDLFEINEAFASQFVYCRNKLGLDP---EKINVNGGALAIGHPLGTTGARCVAT 381
GL DID+FE+NEAFA+Q + C LGL EKIN+NGGA+A+GHPLG +GAR T
Sbjct: 296 GLSASDIDVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTT 355
Query: 382 LLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
L++ M+R+ +FG+ +MCIG G G A VFER
Sbjct: 356 LINLMERKDA--QFGLATMCIGLGQGIATVFER 386
>1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex,
lyase, oxidoreductase/transferase complex, lyase; HET:
ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1
c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C*
Length = 390
Score = 456 bits (1175), Expect = e-160
Identities = 155/393 (39%), Positives = 212/393 (53%), Gaps = 38/393 (9%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEK-TNVDPSEVGDIVV------- 102
DVVIV RT + +SK G ++T +D+ A ++ V+E+ + VDP EV D++
Sbjct: 6 DVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQTL 65
Query: 103 -----------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 145
T +TV+R C S + A+ A AI G D+ + G+E M
Sbjct: 66 EQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHMG 125
Query: 146 VNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAAT 205
M V+P A MG+T+E + G++R++QD AV SH+ A AT
Sbjct: 126 HVSMM--HGVDPNPHMSLYAAKASGMMGLTAEMLGKMHGISREQQDAFAVRSHQLAHKAT 183
Query: 206 AAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK-KDGTTTA 264
GKFKDEIIP+ + D+ IRP+T++ LA LKP F K GT TA
Sbjct: 184 VEGKFKDEIIPMQGY-----DENGFLKIFDYDETIRPDTTLESLAALKPAFNPKGGTVTA 238
Query: 265 GNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSA 324
G SSQ++DGA +++M A GL L V R+ A GVDPAIMG GP A A+K A
Sbjct: 239 GTSSQITDGASCMIVMSAQRAKDLGLEPLAVIRSMAVAGVDPAIMGYGPVPATQKALKRA 298
Query: 325 GLQLDDIDLFEINEAFASQFVYCRNKLGL---DPEKINVNGGALAIGHPLGTTGARCVAT 381
GL + DID E+NEAFA+Q + L + EK+N++GGA+A+GHP G +GAR T
Sbjct: 299 GLNMADIDFIELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGT 358
Query: 382 LLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
LL+ MK+ G FG+ +MCIG G G A VFER
Sbjct: 359 LLNVMKQNGG--TFGLSTMCIGLGQGIATVFER 389
>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center
for structural genomics O infectious diseases, alpha
beta; HET: CSO; 1.70A {Bacillus anthracis}
Length = 394
Score = 419 bits (1081), Expect = e-145
Identities = 141/402 (35%), Positives = 219/402 (54%), Gaps = 52/402 (12%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV-------- 102
+VVI AA R+ + + G K+ P +L PVL+ +++ V+P EV ++++
Sbjct: 6 NVVITAAVRSPI-GTFGGALKNVTPVELAVPVLQEAVKRGGVEPHEVDEVILGHCIQRTD 64
Query: 103 ---------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVN 147
+TV T+ RQCSSG+QA+ A I+ G ++ + G+E+M+ +
Sbjct: 65 EANTARTAALAAGFPDTVTGYTIQRQCSSGMQAIMSAAMQIQLGVSEVVVAGGVEAMSSS 124
Query: 148 PMAWEGS------VNPKVK---------AFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQ 192
P A + + +++ + MG T+EN+ ++ +TR+EQD+
Sbjct: 125 PYALKQHRWGQRLQHGEIRDTVWEVLEDPIHH-----IMMGETAENLVEQYEITREEQDE 179
Query: 193 AAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKL 252
A+ SH A A +G F D+I+P+ K K V S D+ R + + +LA L
Sbjct: 180 VALRSHTLALKAIESGYFDDQIVPITIK------ERRKEVVFSKDEHPRADITAEKLAGL 233
Query: 253 KPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVG 312
KP F+KDG+ TAGN+S ++DG+ ++LM A KGL L ++ GVDP IMG+G
Sbjct: 234 KPAFRKDGSVTAGNASGLNDGSAVLVLMSEEKAKEKGLQPLARIVGYSVAGVDPKIMGIG 293
Query: 313 PAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLG 372
PA AI ++ L+D DL EINEAFA+Q++ +L LD EK+NVNG + +GHP+G
Sbjct: 294 PAPAIRKGLEKVDWSLEDADLLEINEAFAAQYLAVEKELDLDREKVNVNGSGVGLGHPIG 353
Query: 373 TTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
TGAR +L+HE+KRRG G+ S+C+G G+G A E
Sbjct: 354 CTGARITVSLIHELKRRGL--EKGIASLCVGGGIGVALFIEA 393
>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 3.00A
{Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1
Length = 401
Score = 417 bits (1074), Expect = e-144
Identities = 158/411 (38%), Positives = 221/411 (53%), Gaps = 61/411 (14%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV-------- 102
+ IV A RT + K G PDDLLA L +++++ V EV D+
Sbjct: 3 EAWIVEAVRTPIGK-HGGALASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGE 61
Query: 103 ----------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTV 146
V TVNR C SGL+AVA A AI AG + IG+G+ESM+
Sbjct: 62 DNRNVARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSR 121
Query: 147 NPMAWEGS--------------------VNPKVK-AFEQAQNCLLPMGVTSENVAHRFGV 185
P A VNPK++ + MG T+EN+A +G+
Sbjct: 122 APYAVPKPERGFPTGNLVMYDTTLGWRFVNPKMQALYGT-----ESMGETAENLAEMYGI 176
Query: 186 TRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTS 245
R+EQD+ A+ SH+KA A G+F+DE++PV K ++ + + D+G R +TS
Sbjct: 177 RREEQDRFALLSHQKAVRAWEEGRFQDEVVPVPVK------RGKEEILVEQDEGPRRDTS 230
Query: 246 VSELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD 305
+ +LA L+PVF++ GT TAGNSS ++DGA AVLL+ A GL L R A GV
Sbjct: 231 LEKLAALRPVFREGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGLRPLARVRAIAVAGVP 290
Query: 306 PAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGL--DPEKINVNGG 363
P IMG+GP A A++ AGL D+ L E+NEAFA+Q + + L + +++N NGG
Sbjct: 291 PRIMGIGPVPATRKALERAGLSFSDLGLIELNEAFAAQALAVLREWSLSMEDQRLNPNGG 350
Query: 364 ALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
A+A+GHPLG +GAR + TL+HEM+RR +FG+ +MCIG G G A V E
Sbjct: 351 AIALGHPLGASGARILTTLVHEMRRRKV--QFGLATMCIGVGQGIAVVVEG 399
>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
avium}
Length = 407
Score = 414 bits (1066), Expect = e-143
Identities = 131/413 (31%), Positives = 200/413 (48%), Gaps = 63/413 (15%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTN-VDPSEVGDIVV------- 102
+ I A RT K K G + P +L+ ++ + + +D + + D+++
Sbjct: 8 EAFIYEAIRTPRGKQKNGSLTEVKPLNLVVGLVDELRRRYPDLDETLISDMILGVVSPVG 67
Query: 103 -----------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 145
ET +NR C+SGL+AV A +++G+ D+ + G+ESM+
Sbjct: 68 DQGGDIARTAVLAAGLPETTGGVQLNRFCASGLEAVNTAAQKVRSGWDDLVLAGGVESMS 127
Query: 146 VNPMAWEG---SVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAA 202
PM +G + +P+ + +P G+ ++ +A G +R++ D A+ S +KAA
Sbjct: 128 RVPMGSDGGAWATDPETNY----RIGFVPQGIGADLIATLEGFSREDVDAYALRSQQKAA 183
Query: 203 AATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKDGTT 262
AA + G F ++PV V + D+ +RP+T++ LAKLK F G
Sbjct: 184 AAWSGGYFAKSVVPV--------RDQNGLVILDHDEHMRPDTTMEGLAKLKTAFDGVGEM 235
Query: 263 ---------------------TAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAA 301
T GNSS + DGA VL+ +GL A
Sbjct: 236 GGFDDVALQKYHWVEKINHVHTGGNSSGIVDGAALVLVGSEKAGKSQGLTPRARIVATAT 295
Query: 302 VGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVN 361
G DP IM GP A + AGL +DDIDLFE+NEAFAS + + L + EK+NVN
Sbjct: 296 SGSDPVIMLTGPTPATRKVLDRAGLTIDDIDLFELNEAFASVVLKFQKDLNIPDEKLNVN 355
Query: 362 GGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
GGA+A+GHPLG TGA T++ E++RR R +I++CIG GMG A + ER
Sbjct: 356 GGAIAMGHPLGATGAMITGTMVDELERRNA--RRALITLCIGGGMGVATIIER 406
>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for
structural genomics of infec diseases, csgid, thiolase;
1.25A {Clostridium difficile}
Length = 396
Score = 412 bits (1061), Expect = e-142
Identities = 143/403 (35%), Positives = 215/403 (53%), Gaps = 53/403 (13%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV-------- 102
+VVI +A RTA+ G FK +L K I++ N+ P + + ++
Sbjct: 8 EVVIASAARTAVGSFG-GAFKSVSAVELGVTAAKEAIKRANITPDMIDESLLGGVLTAGL 66
Query: 103 ---------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVN 147
P T+N C SGL++V+ + I G DI + G E+M+++
Sbjct: 67 GQNIARQIALGAGIPVEKPAMTINIVCGSGLRSVSMASQLIALGDADIMLVGGAENMSMS 126
Query: 148 PMAWEGS------VNPKVK----------AFEQAQNCLLPMGVTSENVAHRFGVTRKEQD 191
P + + F MG+T+EN+A ++ +TR+EQD
Sbjct: 127 PYLVPSARYGARMGDAAFVDSMIKDGLSDIFNN-----YHMGITAENIAEQWNITREEQD 181
Query: 192 QAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAK 251
+ A+ S KA A A GKF +EI+PV K G + + D+ I+P T++ +LAK
Sbjct: 182 ELALASQNKAEKAQAEGKFDEEIVPVVIK------GRKGDTVVDKDEYIKPGTTMEKLAK 235
Query: 252 LKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV 311
L+P FKKDGT TAGN+S ++DGA +++M + A G+ L ++ GVDP IMG
Sbjct: 236 LRPAFKKDGTVTAGNASGINDGAAMLVVMAKEKAEELGIEPLATIVSYGTAGVDPKIMGY 295
Query: 312 GPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPL 371
GP A A+++A + ++DIDL E NEAFA+Q V L +D K+NVNGGA+AIGHP+
Sbjct: 296 GPVPATKKALEAANMTIEDIDLVEANEAFAAQSVAVIRDLNIDMNKVNVNGGAIAIGHPI 355
Query: 372 GTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
G +GAR + TLL+EMKRR + G+ ++CIG GMG + +R
Sbjct: 356 GCSGARILTTLLYEMKRRDA--KTGLATLCIGGGMGTTLIVKR 396
>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase;
2.00A {Clostridium difficile}
Length = 395
Score = 410 bits (1057), Expect = e-142
Identities = 148/403 (36%), Positives = 222/403 (55%), Gaps = 52/403 (12%)
Query: 51 DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV-------- 102
DVVIV+A RT + S G FK+T L +K I + ++ SE+ ++++
Sbjct: 6 DVVIVSAVRTPI-GSFGGVFKNTSAVQLGTIAVKEAISRVGLNLSEIDEVIIGNVLQTGL 64
Query: 103 ---------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVN 147
+VP TVN+ C SGL++V A +I +G D+ I G E+M+
Sbjct: 65 GQNVARQIAINAGIPNSVPSYTVNKLCGSGLKSVQLAAQSITSGENDVVIAGGTENMSQA 124
Query: 148 PMAWEGS------VNPKVK----------AFEQAQNCLLPMGVTSENVAHRFGVTRKEQD 191
P + N + AF Q MG+T+EN+A +F TR+ QD
Sbjct: 125 PYIVPTARFGSKMGNITMVDSMLTDGLIDAFNQ-----YHMGITAENIATKFEFTREMQD 179
Query: 192 QAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAK 251
+ A++S KA A +FK+EI+PV I + G TI D+ + + L+K
Sbjct: 180 KLALESQNKAENAIKNNRFKEEIVPVDVLI---RRGK--IETIDKDEYPKLGMTFEGLSK 234
Query: 252 LKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV 311
LKP FKKDGT TAGN+S ++DGA ++LM + A G+ L +++A+ GV+P +MG
Sbjct: 235 LKPAFKKDGTVTAGNASGINDGAAMLILMSQQKADELGIRPLAKIKSYASAGVEPEVMGT 294
Query: 312 GPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPL 371
GP A A+K AGL ++DIDL E NEAFA+Q + +N+L +D K+NVNGGA+A+GHP+
Sbjct: 295 GPIPATRKALKKAGLSINDIDLIEANEAFAAQALAVKNELQIDSSKLNVNGGAIALGHPI 354
Query: 372 GTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
G +GAR + TL++EM++R G+ ++CIG G G + V R
Sbjct: 355 GASGARILVTLIYEMQKRKV--ETGLATLCIGGGQGISMVVSR 395
>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis,
thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera}
PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A*
2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A*
2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A*
...
Length = 392
Score = 400 bits (1031), Expect = e-138
Identities = 157/407 (38%), Positives = 218/407 (53%), Gaps = 60/407 (14%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV------- 102
+VI +A RTA+ S G F +T +L A V+ AV+E+ V EV ++++
Sbjct: 3 PSIVIASAARTAV-GSFNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAG 61
Query: 103 ----------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTV 146
+ +N+ C SGL+AVA I G I + G+ESM++
Sbjct: 62 EGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQQIATGDASIIVAGGMESMSM 121
Query: 147 NP-------------------MAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTR 187
P M +G + AF MG T+ENVA ++ ++R
Sbjct: 122 APHCAHLRGGVKMGDFKMIDTMIKDGLTD----AFYG-----YHMGTTAENVAKQWQLSR 172
Query: 188 KEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVS 247
EQD AV S KA AA G+FKDEI+P K G + +T+ D+ IR ++
Sbjct: 173 DEQDAFAVASQNKAEAAQKDGRFKDEIVPFIVK------GRKGDITVDADEYIRHGATLD 226
Query: 248 ELAKLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPA 307
+AKL+P F K+GT TAGN+S ++DGA A LLM + A R+G+ LG ++A VGVDP
Sbjct: 227 SMAKLRPAFDKEGTVTAGNASGLNDGAAAALLMSEAEASRRGIQPLGRIVSWATVGVDPK 286
Query: 308 IMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAI 367
+MG GP A A++ AG ++ D+DL E NEAFA+Q LG DP +NVNGGA+AI
Sbjct: 287 VMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLGWDPSIVNVNGGAIAI 346
Query: 368 GHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
GHP+G +GAR + TLL EMKRRG R G+ ++CIG GMG A E
Sbjct: 347 GHPIGASGARILNTLLFEMKRRGA--RKGLATLCIGGGMGVAMCIES 391
>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA;
1.55A {Homo sapiens} PDB: 1wl5_A
Length = 397
Score = 386 bits (994), Expect = e-132
Identities = 147/409 (35%), Positives = 218/409 (53%), Gaps = 62/409 (15%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV------- 102
D VVIV+A RT + S G DL + V+K V+++ V P +V +++
Sbjct: 6 DPVVIVSAARTII-GSFNGALAAVPVQDLGSTVIKEVLKRATVAPEDVSEVIFGHVLAAG 64
Query: 103 ----------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTV 146
+VP + C SGL+AV +I G I + G+E+M+
Sbjct: 65 CGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAVQSIGIGDSSIVVAGGMENMSK 124
Query: 147 NP-------------------MAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTR 187
P + +G + AF MG+T+ENVA ++ V+R
Sbjct: 125 APHLAYLRTGVKIGEMPLTDSILCDGLTD----AFHN-----CHMGITAENVAKKWQVSR 175
Query: 188 KEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVS 247
++QD+ AV S + A AG F EI+PV V + G + + D+ R +++
Sbjct: 176 EDQDKVAVLSQNRTENAQKAGHFDKEIVPVL---VSTRKGL---IEVKTDEFPRHGSNIE 229
Query: 248 ELAKLKPVFKKDGTT--TAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD 305
++KLKP F DGT T N+S ++DGA AV+LMK+S A ++GL L +++ VGV+
Sbjct: 230 AMSKLKPYFLTDGTGTVTPANASGINDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGVE 289
Query: 306 PAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGAL 365
P+IMG+GP AI AV AG L+D+D+FEINEAFA+ +LGL+PEK+N+ GGA+
Sbjct: 290 PSIMGIGPIPAIKQAVTKAGWSLEDVDIFEINEAFAAVSAAIVKELGLNPEKVNIEGGAI 349
Query: 366 AIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
A+GHPLG +G R + TLLH ++R GR GV ++CIG GMG A +R
Sbjct: 350 ALGHPLGASGCRILVTLLHTLERMGR--SRGVAALCIGGGMGIAMCVQR 396
>2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION,
chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology;
HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A*
2ibu_A* 2ibw_A* 2iby_A* 2f2s_A*
Length = 395
Score = 346 bits (890), Expect = e-117
Identities = 117/407 (28%), Positives = 196/407 (48%), Gaps = 62/407 (15%)
Query: 50 DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV------- 102
+VVIV+A RT + S G L + ++ IEK + EV + +
Sbjct: 8 KEVVIVSATRTPI-GSFLGSLSLLPATKLGSIAIQGAIEKAGIPKEEVKEAYMGNVLQGG 66
Query: 103 ----------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTV 146
+ P T+N+ C+SG++A+ + ++ G D+ + G+ESM+
Sbjct: 67 EGQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMASQSLMCGHQDVMVAGGMESMSN 126
Query: 147 NP------------------MAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRK 188
P + +G + + + + MG +EN A + + R
Sbjct: 127 VPYVMNRGSTPYGGVKLEDLIVKDGLTD----VYNK-----IHMGSCAENTAKKLNIARN 177
Query: 189 EQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSE 248
EQD A++S+ ++ AA AGKF +E+IPV +P + +D S+
Sbjct: 178 EQDAYAINSYTRSKAAWEAGKFGNEVIPVTVT------VKGQPDVVVKEDEEYKRVDFSK 231
Query: 249 LAKLKPVFKKD-GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPA 307
+ KLK VF+K+ GT TA N+S ++DGA A++LM A R + L FA V+P
Sbjct: 232 VPKLKTVFQKENGTVTAANASTLNDGAAALVLMTADAAKRLNVTPLARIVAFADAAVEPI 291
Query: 308 IMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAI 367
+ P A +K GL+ +DI ++E+NEAF+ + L +DP+K+N+NGGA+++
Sbjct: 292 DFPIAPVYAASMVLKDVGLKKEDIAMWEVNEAFSLVVLANIKMLEIDPQKVNINGGAVSL 351
Query: 368 GHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
GHP+G +GAR V L H +K+ G+ S+C G G +A + ++
Sbjct: 352 GHPIGMSGARIVGHLTHALKQGEY----GLASICNGGGGASAMLIQK 394
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 6e-06
Identities = 41/182 (22%), Positives = 61/182 (33%), Gaps = 62/182 (34%)
Query: 1 MEKAINRQQVLLEH-LRPSNSSS--HNYESIL---SASACAAGDSAAYHRTSVYG-DDVV 53
MEKA L L P++++ H S L +A A A V + +V
Sbjct: 1739 MEKAAFE--DLKSKGLIPADATFAGH---S-LGEYAALASLAD---------VMSIESLV 1783
Query: 54 -IVAAYRTALCKSKRGGF-KDTYPDDLLAPVLKAVIEKTNVDPSEVG--------DIVVE 103
+V RG + P D L +I ++P V VVE
Sbjct: 1784 EVVF---------YRGMTMQVAVPRDELGRSNYGMIA---INPGRVAASFSQEALQYVVE 1831
Query: 104 TVPVRT------VN-----RQ--CS---SGLQAVADVAAAIKAGFYDIGIGAGLESMTVN 147
V RT VN +Q + L V +V IK I I +S+++
Sbjct: 1832 RVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQ--KIDIIELQKSLSLE 1889
Query: 148 PM 149
+
Sbjct: 1890 EV 1891
Score = 47.4 bits (112), Expect = 1e-05
Identities = 65/336 (19%), Positives = 114/336 (33%), Gaps = 103/336 (30%)
Query: 11 LLEHLRPSNSSSHNYESILSASACAAGDSAAYHRTSVYGDDVVIVAAYRTAL-------C 63
L +L+ ++ + + +++A A A DS S + + R A+
Sbjct: 263 LRSYLK---GATGHSQGLVTAVAIAETDSWE----SFF-------VSVRKAITVLFFIGV 308
Query: 64 KSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVETVP-----VRTVNRQCSSGL 118
+ YP+ L P +++E D E E VP + + ++ +
Sbjct: 309 RCYE-----AYPNTSLPP---SILE----DSLENN----EGVPSPMLSISNLTQEQ---V 349
Query: 119 QAVADVAAAIKAGFYDIGIGA--GLESMTV--NPMAWEGSVNP--KVKA---FEQAQNCL 169
Q + + + I G +++ V P + G K KA +Q++
Sbjct: 350 QDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR--- 406
Query: 170 LPMGVTSE---NVAHRFG-VT--------RKEQDQAAVDSHRKAAAATAAGKFKDEIIPV 217
+P SE ++RF V D D + + A KD IPV
Sbjct: 407 IPF---SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA----KDIQIPV 459
Query: 218 ATKIVDPKTG-DEKPVTISVDDGIRPNTSVSELAKLKPV-FKKDGTTTAGNSSQVSD-GA 274
D G D + + I V + +L PV ++ TT ++ + D G
Sbjct: 460 ----YDTFDGSDLR----VLSGSISERI-VDCIIRL-PVKWET---TTQFKATHILDFGP 506
Query: 275 GAV----LLMKRSVAMRKGLPILGVFRTFAAVGVDP 306
G +L R + G GV R A +D
Sbjct: 507 GGASGLGVLTHR---NKDG---TGV-RVIVAGTLDI 535
Score = 46.6 bits (110), Expect = 2e-05
Identities = 53/312 (16%), Positives = 84/312 (26%), Gaps = 124/312 (39%)
Query: 153 GSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKD 212
GS Q Q MG ++ + ++A D+H FKD
Sbjct: 1625 GS---------QEQG----MG---MDLYKTSKAAQDVWNRA--DNH-----------FKD 1655
Query: 213 EIIPVATKIVDPKTGDEKPVTISVDDG------IRPN-------TSVSELAKLKPVFKKD 259
IV PV +++ G IR N T V K + +FK+
Sbjct: 1656 TYGFSILDIVI-----NNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEI 1710
Query: 260 GTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRT-FAAVGVDPAIMGVGPAVAIP 318
+ + + + LL T F PA+ + A
Sbjct: 1711 NEHS----TSYTFRSEKGLL----------------SATQFT----QPALTLME--KAAF 1744
Query: 319 AAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLG------ 372
+KS GL + FA GH LG
Sbjct: 1745 EDLKSKGL-------IPADATFA--------------------------GHSLGEYAALA 1771
Query: 373 -TTGARCVATLLHEMKRRGRDCRFGVISMCIGT---GMGA------AAVFERGDCADELC 422
+ +L+ + RG + V +G GM A AA F + + +
Sbjct: 1772 SLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ-EALQYVV 1830
Query: 423 NVRKVESNNFLS 434
+ +
Sbjct: 1831 ERVGKRTGWLVE 1842
Score = 34.3 bits (78), Expect = 0.11
Identities = 48/300 (16%), Positives = 86/300 (28%), Gaps = 131/300 (43%)
Query: 25 YESILSASACAAGDSAAYHRTSVYG---DDVV------------------IVAAYRTALC 63
Y++ S +A + A H YG D+V I Y +
Sbjct: 1636 YKT--SKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 64 KSKRGG-------FKD--------TY--PDDLLA------PVLKAV-------IEKTNVD 93
++ G FK+ T+ LL+ P L + ++ +
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLI 1753
Query: 94 P--------S--E------VGDI-----VVETVPVRTVNRQCSSGLQAVADVAAAIKAGF 132
P S E + D+ +VE V R G + + G
Sbjct: 1754 PADATFAGHSLGEYAALASLADVMSIESLVEVVFYR--------G-MTMQVAVPRDELGR 1804
Query: 133 YDIGIGAGLESMTVNP--MAWEGS---VNPKVKAFEQAQNCLLPMGVTSE----NVAHRF 183
+ G+ A +NP +A S + V+ + L+ E NV +
Sbjct: 1805 SNYGMIA------INPGRVAASFSQEALQYVVERVGKRTGWLV------EIVNYNVEN-- 1850
Query: 184 GVTRKEQ-----DQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDD 238
+Q D A+D K + I + E ++S+++
Sbjct: 1851 -----QQYVAAGDLRALD-----TVTNVLNFIKLQKIDII----------ELQKSLSLEE 1890
Score = 29.2 bits (65), Expect = 3.8
Identities = 38/246 (15%), Positives = 70/246 (28%), Gaps = 69/246 (28%)
Query: 182 RF-G-VTRKEQDQAAVDSHRKAAAATAAGKFKDEIIP-------VATKIVDPKTGDEKPV 232
+F G V+ + +F++ + A + + T K
Sbjct: 63 KFLGYVSSLVEPSKV--GQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 233 TI------SVDDGIRPNTSVSELAKLKPVFKKDGTTTA-----GNS-------------- 267
+ + RP S A + V + + A GN+
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY 180
Query: 268 -SQVSD---GAGAVL--LMKRSVAMRK----GLPILGVFRTFAAVGVDPAIMGVGPAVAI 317
V D + L L++ ++ K GL IL + ++ + ++
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI--PISC 238
Query: 318 PAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKI--NVNGGALAIGHPLGTTG 375
P I + A V + LG P ++ + G A GH G
Sbjct: 239 PL-----------IGVI----QLAHYVVTAKL-LGFTPGELRSYLKG---ATGHSQGLVT 279
Query: 376 ARCVAT 381
A +A
Sbjct: 280 AVAIAE 285
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 46.0 bits (109), Expect = 2e-05
Identities = 21/159 (13%), Positives = 46/159 (28%), Gaps = 28/159 (17%)
Query: 271 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-------VDPAIMGVGPAVAIPAAVKS 323
+ GAG ++M+ +A++ G+PI G+ A P + A ++VK
Sbjct: 1180 AQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKY 1239
Query: 324 AGLQLD--------DIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 375
A L+ +I + ++ + + +
Sbjct: 1240 ASPNLNMKYRKRQLVTREAQIKDWVENELEA-----------LKLEAEEIPSEDQNEFLL 1288
Query: 376 ARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 414
R + +E + + R + A
Sbjct: 1289 ER-TREIHNEAESQLRAAQQQ-WGNDFYKRDPRIAPLRG 1325
Score = 34.5 bits (79), Expect = 0.073
Identities = 15/78 (19%), Positives = 25/78 (32%), Gaps = 13/78 (16%)
Query: 310 GVGPAVAIPAAVKSAGLQLDDIDLF----------EINEAFASQFVYCRNKLGLDP-EKI 358
+ A+ + GL +DD+ + + NE+ + LG +
Sbjct: 1316 RDPRIAPLRGALATYGLTIDDLGVASFHGTSTKANDKNESATINEMM--KHLGRSEGNPV 1373
Query: 359 NVNGGALAIGHPLGTTGA 376
GHP G GA
Sbjct: 1374 IGVFQKFLTGHPKGAAGA 1391
Score = 29.1 bits (65), Expect = 4.1
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 106 PVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMT 145
P++T C++ +++V I +G I I G +
Sbjct: 1098 PIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDFQ 1137
>3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl
transfer, transferase; 2.00A {Streptomyces tendae} PDB:
3t5y_A* 3t6s_A* 3t8e_A 3t5y_B*
Length = 357
Score = 41.5 bits (98), Expect = 4e-04
Identities = 15/83 (18%), Positives = 23/83 (27%), Gaps = 19/83 (22%)
Query: 316 AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIG 368
A A++ AG ++DI + LGL E+ + G
Sbjct: 243 AKTQALEDAGTAIEDIAHAVIPVSRRGTGHELH-------DLLGLPDERTSWA-----YG 290
Query: 369 HPLGTTGARCVATLLHEMKRRGR 391
G GA L +
Sbjct: 291 RTTGHVGAGDQYAGLAHLVENAL 313
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; 3.1A
{Thermomyces lanuginosus} PDB: 2uvb_A*
Length = 1878
Score = 40.3 bits (94), Expect = 0.001
Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 17/96 (17%)
Query: 271 SDGAGAVLLMKRSVAMRKGLPILGVFRTFA----AVGVDPAIMGVGPAVAIPAAVKSAGL 326
S G G ++M +A+ G+PI G+ + +G G G +
Sbjct: 1354 SQGCGVQVIMTAQLALEMGVPIYGIVAMTSTATDKIGRSVPAPGQGVLTTAREKSGNFPS 1413
Query: 327 QLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNG 362
L DI Y R +L L ++I
Sbjct: 1414 PLLDIK-------------YRRRQLELRRQQIKQWK 1436
Score = 28.0 bits (62), Expect = 7.7
Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 13/76 (17%)
Query: 312 GPAVAIPAAVKSAGLQLDDID----------LFEINEAFASQFVYCRNKLGLDP-EKINV 360
+ A+ + GL +DD+ + NE+ LG +
Sbjct: 1498 SRIAPLRGALATWGLTIDDLGVASFHGTSTVANDKNESDVICQQL--KHLGRTKGNAVLG 1555
Query: 361 NGGALAIGHPLGTTGA 376
GHP G GA
Sbjct: 1556 IFQKYLTGHPKGAAGA 1571
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 39.6 bits (93), Expect = 0.002
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 271 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV----GPA--VAIPAAVKSA 324
++GAG ++L + S A R+G P+L V R +AV D A G+ GPA I A+++A
Sbjct: 263 AEGAGVLVLQRLSAARREGRPVLAVLRG-SAVNQDGASNGLTAPSGPAQQRVIRRALENA 321
Query: 325 GLQLDDIDLFE 335
G++ D+D E
Sbjct: 322 GVRAGDVDYVE 332
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 39.5 bits (93), Expect = 0.002
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 271 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV----GPA--VAIPAAVKSA 324
S+G VLL + S A R G +L V R +A+ D A G+ GPA I A++S
Sbjct: 241 SEGVTLVLLERLSEARRNGHEVLAVVRG-SALNQDGASNGLSAPSGPAQRRVIRQALESC 299
Query: 325 GLQLDDIDLFE 335
GL+ D+D E
Sbjct: 300 GLEPGDVDAVE 310
>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen
condensation reaction, transfera; HET: CER; 1.70A
{Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A
3s20_A* 3fk5_A
Length = 345
Score = 37.2 bits (87), Expect = 0.007
Identities = 26/143 (18%), Positives = 42/143 (29%), Gaps = 37/143 (25%)
Query: 272 DGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV------GPAV---------- 315
GA A+++ RS + G A + +
Sbjct: 192 CGAAAMVM-ARSELVPDAPRYKGGVTRSATEWNKLCRGNLDRMVTDTRLLLIEGIKLAQK 250
Query: 316 AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIG 368
AA + G ++++D F AF G+DP K+ G
Sbjct: 251 TFVAAKQVLGWAVEELDQFVIHQVSRPHTAAFV-------KSFGIDPAKVMTI-----FG 298
Query: 369 HPLGTTGARCVATLLHEMKRRGR 391
G G V +L ++K GR
Sbjct: 299 E-HGNIGPASVPIVLSKLKELGR 320
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.019
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 13/42 (30%)
Query: 281 KRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVK 322
K+++ K L + +A D A PA+AI A ++
Sbjct: 19 KQAL---KKLQ--ASLKLYAD---DSA-----PALAIKATME 47
Score = 29.1 bits (64), Expect = 1.5
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 59 RTALCKSKRGGFKDTY-PDDLLAPVLKAVIE 88
+ AL K + K Y D A +KA +E
Sbjct: 19 KQAL-KKLQASLK-LYADDSAPALAIKATME 47
>3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin,
platencin A1, KAS2, acyltransferase, fatty acid
biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB:
3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A*
2gfw_A 2gfy_A* 1kas_A 1b3n_A
Length = 427
Score = 35.6 bits (83), Expect = 0.027
Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 20/121 (16%)
Query: 271 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 325
DGAG ++L + A ++G I F P G G A+A+ A++ AG
Sbjct: 247 GDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPENGAGAALAMANALRDAG 306
Query: 326 LQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 375
++ I + EA A + + G ++ V+ GH LG G
Sbjct: 307 IEASQIGYVNAHGTSTPAGDKAEAQAVKTI-----FGEAASRVLVSSTKSMTGHLLGAAG 361
Query: 376 A 376
A
Sbjct: 362 A 362
>1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes,
fatty acid elongation, acyl-carrier protein (ACP); HET:
CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1
c.95.1.1
Length = 408
Score = 35.2 bits (82), Expect = 0.034
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 20/121 (16%)
Query: 271 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 325
+GAG ++L A ++G I F +P G G A+A+ A+K AG
Sbjct: 230 GEGAGVLVLEAYEHAKKRGARIYAELVGFGRSADAHHITEPHPEGKGAALAMARALKDAG 289
Query: 326 LQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 375
+ + + + + E A + V G +++ V+ IGH LG G
Sbjct: 290 IAPEQVGYINAHGTSTPVGDRAEVLAIKRV-----FGDHAKRLMVSSTKSMIGHLLGAAG 344
Query: 376 A 376
A
Sbjct: 345 A 345
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_A* 3hmj_A*
Length = 1887
Score = 35.7 bits (82), Expect = 0.035
Identities = 19/145 (13%), Positives = 49/145 (33%), Gaps = 5/145 (3%)
Query: 271 SDGAGAVLLMKRSVAMRKGLPILGVFRTFA----AVGVDPAIMGVGPAVAIPAAVKSAGL 326
+ GAG ++M+ +A++ G+PI G+ A +G G G S
Sbjct: 1379 AQGAGIQIIMQADLALKMGVPIYGIVAMAATATDKIGRSVPAPGKGILTTAREHHSSVKY 1438
Query: 327 QLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEM 386
++++ ++ ++ + + E + + + R + +E
Sbjct: 1439 ASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSEDQNEFLLER-TREIHNEA 1497
Query: 387 KRRGRDCRFGVISMCIGTGMGAAAV 411
+ + R + + A +
Sbjct: 1498 ESQLRAAQQQWGNDFYKRDPRIAPL 1522
>1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing
enzyme, biosynthetic role, carbon-carbon bond formation;
1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1
Length = 416
Score = 35.2 bits (82), Expect = 0.035
Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 20/121 (16%)
Query: 271 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 325
+G+G ++L + A+ +G I G +A P G G AI A+K +G
Sbjct: 236 GEGSGILILEELESALARGAKIYGEMVGYAMTCDAYHITAPVPDGRGATRAIAWALKDSG 295
Query: 326 LQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 375
L+ + + ++ E A + LG I V+ GH LG +G
Sbjct: 296 LKPEMVSYINAHGTSTPANDVTETRAIKQA-----LGNHAYNIAVSSTKSMTGHLLGGSG 350
Query: 376 A 376
Sbjct: 351 G 351
>2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb
fold, transferase; 2.30A {Staphylococcus aureus}
Length = 437
Score = 35.2 bits (82), Expect = 0.036
Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 20/121 (16%)
Query: 271 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 325
+GAG +++ A +G I + G PA G G + A+ AA+ AG
Sbjct: 256 GEGAGILVIESLESAQARGANIYAEIVGYGTTGDAYHITAPAPEGEGGSRAMQAAMDDAG 315
Query: 326 LQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 375
++ D+ + ++NE A + G + + V+ GH LG TG
Sbjct: 316 IEPKDVQYLNAHGTSTPVGDLNEVKAIKNT-----FGEAAKHLKVSSTKSMTGHLLGATG 370
Query: 376 A 376
Sbjct: 371 G 371
>3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid,
structural genomics; 1.85A {Listeria monocytogenes}
Length = 413
Score = 34.8 bits (81), Expect = 0.046
Identities = 32/121 (26%), Positives = 47/121 (38%), Gaps = 20/121 (16%)
Query: 271 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 325
+GAG V+L + A +G I + A G PA G G A A+ A+ AG
Sbjct: 232 GEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNGEGAARAMKMAIDDAG 291
Query: 326 LQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 375
L D +D + E A + V G +K+ ++ GH LG +G
Sbjct: 292 LTPDKVDYINAHGTSTPYNDEYETQAIKTV-----FGEHAKKLAISSTKSMTGHTLGASG 346
Query: 376 A 376
Sbjct: 347 G 347
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain,
CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus
denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Length = 595
Score = 34.1 bits (78), Expect = 0.090
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 175 TSENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVT 233
SE +T E D V + + A AAG ++ E+ V K+VD + T
Sbjct: 215 NSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ-ELNGV--KVVDGRKEASSLFT 270
>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A
{Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2
PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A*
2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A
Length = 335
Score = 33.6 bits (78), Expect = 0.099
Identities = 32/138 (23%), Positives = 45/138 (32%), Gaps = 38/138 (27%)
Query: 271 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAV----------AIPAA 320
SDG A + I + G P + GPAV A
Sbjct: 191 SDGEQADAIR---------QDIDWITFAQNPSGPRPFVRLEGPAVFRWAAFKMGDVGRRA 241
Query: 321 VKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGT 373
+ +AG++ D ID+F INE L L P+ + N I H G
Sbjct: 242 MDAAGVRPDQIDVFVPHQANSRINELLV-------KNLQLRPDAVVAN----DIEH-TGN 289
Query: 374 TGARCVATLLHEMKRRGR 391
T A + + E+ G
Sbjct: 290 TSAASIPLAMAELLTTGA 307
>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis,
beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus
thermophilus} SCOP: c.95.1.2 c.95.1.2
Length = 322
Score = 32.8 bits (76), Expect = 0.16
Identities = 34/151 (22%), Positives = 48/151 (31%), Gaps = 44/151 (29%)
Query: 272 DGAGAVLLMKR-------SVAMR---KGLPIL----GVFRTFAAVGVDPAIMGVGPAV-- 315
DG GA ++ K S + G L R + + G V
Sbjct: 157 DGGGAAVVGKVREGYGFRSFVLGADGTGAKELYHACVAPRLPDGTSMKNRLYMNGREVFK 216
Query: 316 --------AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINV 360
A A++ AGL +DI LF I +A +LGL E++ V
Sbjct: 217 FAVRVMNTATLEAIEKAGLTPEDIRLFVPHQANLRIIDAAR-------ERLGLPWERVAV 269
Query: 361 NGGALAIGHPLGTTGARCVATLLHEMKRRGR 391
N + G T + L E GR
Sbjct: 270 N-----VDR-YGNTSTASIPLALKEAVDAGR 294
>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase,
acyltransferase, lipid synthesis, multifun enzyme; 1.81A
{Pseudomonas aeruginosa}
Length = 331
Score = 32.9 bits (76), Expect = 0.17
Identities = 29/153 (18%), Positives = 44/153 (28%), Gaps = 46/153 (30%)
Query: 272 DGAGAVLLMKRSVAMRKGL------------PIL----GVFRTFAAVGVDPAIMGVGPAV 315
DGAGAV+L L +L ++ G AV
Sbjct: 159 DGAGAVVLRAGDAEEEGALLAFDLGSDGHQFDLLMTPAVSRAERSSGQASNYFRMDGKAV 218
Query: 316 ----------AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKI 358
++ + G Q D+ I A A ++L L E++
Sbjct: 219 FGQAVTQMSDSVRRVLDRVGWQASDLHHLVPHQANTRILAAVA-------DQLDLPVERV 271
Query: 359 NVNGGALAIGHPLGTTGARCVATLLHEMKRRGR 391
N I +G T A + L R+G
Sbjct: 272 VSN-----IAE-VGNTVAASIPLALAHGLRQGI 298
>3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural
genomics center for infectious disease, ssgcid,
acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A
Length = 428
Score = 32.9 bits (76), Expect = 0.19
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 21/121 (17%)
Query: 271 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD------PAIMGVGPAVAIPAAVKSA 324
+GAG V+L + A+ +G I + G D P G G + AA+K A
Sbjct: 248 GEGAGIVVLEELEHALARGAKIYAEVIGYGMSG-DAFHITAPTESGEGAQRCMVAALKRA 306
Query: 325 GLQLDDID---------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 375
G+ D+ID + + E A + V +G KI+++ +IGH LG G
Sbjct: 307 GIVPDEIDYINAHGTSTMADTIELGAVERV-----VGEAAAKISMSSTKSSIGHLLGAAG 361
Query: 376 A 376
A
Sbjct: 362 A 362
>2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria,
mitochondrion, lipid synthesis, fatty acid SYN fatty
acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A
2c9h_A
Length = 438
Score = 32.9 bits (76), Expect = 0.22
Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 22/122 (18%)
Query: 271 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD------PAIMGVGPAVAIPAAVKSA 324
+GA ++L + A+++ I + G D P G G + AA+K A
Sbjct: 256 GEGAAVLVLEEYEHAVQRRARIYAEVLGYGLSG-DAGHITAPDPEGEGALRCMAAALKDA 314
Query: 325 GLQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTT 374
G+Q ++I L + E A + + + V+ A GH LG
Sbjct: 315 GVQPEEISYINAHATSTPLGDAAENKAIKHL-----FKDHAYALAVSSTKGATGHLLGAA 369
Query: 375 GA 376
GA
Sbjct: 370 GA 371
>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5,
lipid metabolism, structural genomics; 2.10A {Aquifex
aeolicus}
Length = 309
Score = 32.1 bits (74), Expect = 0.29
Identities = 30/150 (20%), Positives = 51/150 (34%), Gaps = 53/150 (35%)
Query: 272 DGAGAVLLMKR-------SVAMR---KGLPILG-------------VFRTFAAVGVDPAI 308
DGAGAV++ + + M +L +F+ A ++
Sbjct: 158 DGAGAVVVTRSEDKSDILATRMYAEGSLEELLHADNCGYIRMKGRELFK-VAVRSMEEVC 216
Query: 309 MGVGPAVAIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVN 361
++ AG++ +++ L I A A KL + EK+ VN
Sbjct: 217 R---------EVLEKAGVKPEEVSLVIPHQANVRIINALA-------EKLNIPKEKVFVN 260
Query: 362 GGALAIGHPLGTTGARCVATLLHEMKRRGR 391
I G T A + LHE + G+
Sbjct: 261 -----IQK-YGNTSAASIPIALHEAIKEGK 284
>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A
{Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB:
1oxh_A 2alm_A 2rjt_A
Length = 430
Score = 31.7 bits (73), Expect = 0.44
Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 23/121 (19%)
Query: 271 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 325
+G+G ++L A ++G IL + P G G AI A++ A
Sbjct: 251 GEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDAYHMTSPHPEGQGAIKAIKLALEEAE 310
Query: 326 LQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 375
+ + + E E+ A V LG +++ V+ GH LG G
Sbjct: 311 ISPEQVAYVNAHGTSTPANEKGESGAIVAV-----LG---KEVPVSSTKSFTGHLLGAAG 362
Query: 376 A 376
A
Sbjct: 363 A 363
>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle
structural genomics center for infectious DI
transferase; 2.35A {Burkholderia xenovorans}
Length = 333
Score = 31.3 bits (72), Expect = 0.54
Identities = 26/136 (19%), Positives = 44/136 (32%), Gaps = 38/136 (27%)
Query: 271 SDGAGAVLLMKRSVAMRKGLPILG--------VFRTFAAVGVDPAIMGVGPAVAIPAAVK 322
+DG+ + +L + VF+ A ++ + A++
Sbjct: 196 ADGSHSNILCTPGNVNGGVVSGSAFLHMDGQAVFK-LAVNVLEKVAV---------EALE 245
Query: 323 SAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTG 375
A L + ID I ++ KLGL E++ V +G G T
Sbjct: 246 KANLSAEQIDWLIPHQANIRIMQSTC-------RKLGLPQERMIVT-----VGE-HGNTS 292
Query: 376 ARCVATLLHEMKRRGR 391
A + L R GR
Sbjct: 293 AASIPLALDVAVRDGR 308
>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid
biosynthesis, transferase; 2.00A {Staphylococcus aureus
subsp} PDB: 3il7_A
Length = 313
Score = 31.3 bits (72), Expect = 0.57
Identities = 34/151 (22%), Positives = 53/151 (35%), Gaps = 54/151 (35%)
Query: 272 DGAGAVLLMKR-------SVAMR---KGLPIL--------------GVFRTFAAVGVDPA 307
DGAGAV++ + S M G L VF+ AV +
Sbjct: 159 DGAGAVIIGEVSEGRGIISYEMGSDGTGGKHLYLDKDTGKLKMNGREVFK--FAVRIMGD 216
Query: 308 IMGVGPAVAIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINV 360
A V+ A L DDIDLF I E+ +LG+ +K++V
Sbjct: 217 --------ASTRVVEKANLTSDDIDLFIPHQANIRIMESAR-------ERLGISKDKMSV 261
Query: 361 NGGALAIGHPLGTTGARCVATLLHEMKRRGR 391
+ + G T A + + + + G+
Sbjct: 262 S-----VNK-YGNTSAASIPLSIDQELKNGK 286
>1tqy_A Beta-ketoacyl synthase/acyl transferase;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 424
Score = 31.3 bits (72), Expect = 0.68
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 5/67 (7%)
Query: 271 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 325
++GA +L A+ +G I +A G A I A+ +
Sbjct: 238 AEGAAMFVLEDYDSALARGARIHAEISGYATRCNAYHMTGLKADGREMAETIRVALDESR 297
Query: 326 LQLDDID 332
DID
Sbjct: 298 TDATDID 304
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; 2.70A {Haemophilus influenzae}
Length = 323
Score = 30.9 bits (71), Expect = 0.78
Identities = 28/146 (19%), Positives = 41/146 (28%), Gaps = 39/146 (26%)
Query: 272 DGAGAVLLMKR------SVAMR---KGLPILGVFRTFAAVGVDPAIMGVGPAV------- 315
DGAGAV+L S + L + + + I G
Sbjct: 166 DGAGAVILEASEQEGIISTHLHASADKNNALVLAQPERGIEKSGYIEMQGNETFKLAVRE 225
Query: 316 ---AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGAL 365
+ + + L D+D I A A KL +D ++ V
Sbjct: 226 LSNVVEETLLANNLDKKDLDWLVPHQANLRIITATA-------KKLEMDMSQVVVT---- 274
Query: 366 AIGHPLGTTGARCVATLLHEMKRRGR 391
+ A V L E R GR
Sbjct: 275 -LDK-YANNSAATVPVALDEAIRDGR 298
>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase;
HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2
c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A*
2eft_A* 2gyo_A* 3il9_A 1ebl_A*
Length = 317
Score = 30.9 bits (71), Expect = 0.81
Identities = 18/83 (21%), Positives = 26/83 (31%), Gaps = 20/83 (24%)
Query: 316 AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIG 368
+ + + L +D I A A KLG+ + + V +
Sbjct: 223 IVDETLAANNLDRSQLDWLVPHQANLRIISATA-------KKLGMSMDNVVVT-----LD 270
Query: 369 HPLGTTGARCVATLLHEMKRRGR 391
G T A V L E R GR
Sbjct: 271 R-HGNTSAASVPCALDEAVRDGR 292
>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics,
synthetase; 1.60A {Burkholderia pseudomallei} PDB:
3gwe_A
Length = 365
Score = 31.0 bits (71), Expect = 0.82
Identities = 26/141 (18%), Positives = 43/141 (30%), Gaps = 33/141 (23%)
Query: 271 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV---GPAV----------AI 317
+DG GA L+ ++ R+ A G + G V A
Sbjct: 213 TDGRGAPNLIVKAGLFREPKSADSAREHEDASGNVRTDEHLYMNGAEVMAFSLAEVPRAA 272
Query: 318 PAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHP 370
+ AG ++ID F + +A K+ + K V + H
Sbjct: 273 DRLLALAGEPRENIDCFVLHQANRFMLDALR-------KKMKIPEHKFPVL-----MEH- 319
Query: 371 LGTTGARCVATLLHEMKRRGR 391
G T + + L M+ G
Sbjct: 320 CGNTVSSTLPLALETMRANGT 340
>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide,
biosynthetic engineering, catalytic triad, transferase;
HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2
c.95.1.2
Length = 339
Score = 30.6 bits (70), Expect = 0.88
Identities = 23/107 (21%), Positives = 35/107 (32%), Gaps = 35/107 (32%)
Query: 295 VFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYC 347
VFR +A V PA A++ AGL + D+ F I +
Sbjct: 225 VFR-WAVADVVPAAR---------EALEVAGLTVGDLVAFVPHQANLRIIDVLV------ 268
Query: 348 RNKLGLDPEK---INVNGGALAIGHPLGTTGARCVATLLHEMKRRGR 391
++LG+ + G T + VA L + R G
Sbjct: 269 -DRLGVPEHVVVSRDA--------EDTGNTSSASVALALDRLVRSGA 306
>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid
biosynthesis, antibiotic, acyltransferase, cytoplasm,
lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis}
PDB: 3il5_A* 3il4_A*
Length = 321
Score = 30.2 bits (69), Expect = 1.3
Identities = 27/166 (16%), Positives = 48/166 (28%), Gaps = 44/166 (26%)
Query: 272 DGAGAVLLMKR------SVAMR---KGLPIL----GVFRTFAAVGVDPAIMGV---GPAV 315
DGA VL+ + ++ + L + + G A + G ++
Sbjct: 160 DGAAGVLIEAAETPHFLNEKLQADGQRWTALTSGYTINESPFYQGHKQASKTLQMEGRSI 219
Query: 316 ------AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNG 362
+ + + + + +D I + A K + EK N
Sbjct: 220 FDFAIKDVSQNIL-SLVTDETVDYLLLHQANVRIIDKIA-------RKTKISREKFLTN- 270
Query: 363 GALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGA 408
+ G T A + LL E G G + TG G
Sbjct: 271 ----MDK-YGNTSAASIPILLDEAVENGT-LILGSQQRVVLTGFGG 310
>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.35A {Burkholderia xenovorans}
Length = 354
Score = 30.2 bits (69), Expect = 1.5
Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 20/83 (24%)
Query: 316 AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVNGGALAIG 368
+ + AG D D F + + A K GL E++ VN IG
Sbjct: 249 LVSRTLDIAGRDKDSYDAFLFHQANLFMLKHLA-------KKAGLPAERVPVN-----IG 296
Query: 369 HPLGTTGARCVATLLHEMKRRGR 391
G T + L+ +
Sbjct: 297 E-YGNTSCASIPLLITTELKDRL 318
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA,
transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa
PAO1} PDB: 3h76_A 3h77_A*
Length = 359
Score = 29.8 bits (68), Expect = 1.7
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 14/53 (26%)
Query: 316 AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVN 361
+ + L LDDID I +A +LG+ K V
Sbjct: 259 IAGEMLAAHELTLDDIDHVICHQPNLRILDAVQ-------EQLGIPQHKFAVT 304
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 30.2 bits (69), Expect = 1.7
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 14/73 (19%)
Query: 271 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD-PAIMGV----GPA---VAIPAAVK 322
S+G AVLL K+S+A R + A D GV G + I + +
Sbjct: 227 SEGVVAVLLTKKSLARR----VYATILN-AGTNTDGFKEQGVTFPSGDIQEQL-IRSLYQ 280
Query: 323 SAGLQLDDIDLFE 335
SAG+ + + E
Sbjct: 281 SAGVAPESFEYIE 293
>4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct
genomics, seattle structural genomics center for
infectious transferase; 1.90A {Burkholderia
vietnamiensis} PDB: 4f32_A*
Length = 451
Score = 29.8 bits (68), Expect = 1.8
Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 5/67 (7%)
Query: 271 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 325
+GA V++ A+ +G + + G G A+ A++
Sbjct: 263 GEGAAMVVVESLDHALARGARPIAEIIGYGTTADAYHMTAGPDDGSGAMRAMKLALRMGD 322
Query: 326 LQLDDID 332
+ + +D
Sbjct: 323 VAPEQVD 329
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 29.8 bits (67), Expect = 2.0
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 12/72 (16%)
Query: 271 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIM-GV----GPA--VAIPAAVKS 323
++ AVLL K+S+A R + A D + GV G I +
Sbjct: 225 AEAVVAVLLTKKSLARR----VYATILN-AGTNTDGSKEQGVTFPSGDVQEQLIRSLYAP 279
Query: 324 AGLQLDDIDLFE 335
AG + ++ E
Sbjct: 280 AGPDPESLEYIE 291
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone,
actin-like ATPase domain, beta/BETA/alpha swiveling
domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP:
c.8.6.1 c.55.1.6 c.55.1.6
Length = 607
Score = 29.5 bits (66), Expect = 2.4
Identities = 30/133 (22%), Positives = 52/133 (39%), Gaps = 14/133 (10%)
Query: 205 TAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDG---IRPNTSVSELAKLKPVFKKDGT 261
T G + +IP A + G+++ V +G I ++S A ++ + + GT
Sbjct: 251 TPQGDVQSRVIP-AGNLYIS--GEKRRGEADVAEGAEAIM--QAMSACAPVRDIRGEPGT 305
Query: 262 TTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGV---GPAVAIP 318
G +V + L ++ +L V TF V + G AV +
Sbjct: 306 HAGGMLERVRKVMAS--LTGHEMSAIYIQDLLAV-DTFIPRKVQGGMAGECAMENAVGMA 362
Query: 319 AAVKSAGLQLDDI 331
A VK+ LQ+ I
Sbjct: 363 AMVKADRLQMQVI 375
>2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase
I thiolactomycin, cytoplasm, transferase,
acyltransferase; HET: TLM; 1.80A {Mycobacterium
tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A*
Length = 416
Score = 29.4 bits (67), Expect = 2.8
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 5/67 (7%)
Query: 271 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 325
+ +L+ A +G L V PA GV A+ +++ AG
Sbjct: 240 GEAGALMLIETEEHAKARGAKPLARLLGAGITSDAFHMVAPAADGVRAGRAMTRSLELAG 299
Query: 326 LQLDDID 332
L DID
Sbjct: 300 LSPADID 306
>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold,
structural genomics, PSI, protein structure initiative;
2.40A {Mycobacterium tuberculosis}
Length = 434
Score = 29.0 bits (66), Expect = 2.9
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 271 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVG-----VDPAIMGVGPAVAIPAAVKSAG 325
+G +L+ A +G IL + V P G AI A++ AG
Sbjct: 257 GEGGALLLIETEEHAKARGANILARIMGASITSDGFHMVAPDPNGERAGHAITRAIQLAG 316
Query: 326 LQLDDID 332
L DID
Sbjct: 317 LAPGDID 323
>2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl
carrier protein) synthase, lipid metabol condensing
enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1
c.95.1.1 PDB: 1w0i_A
Length = 431
Score = 29.1 bits (66), Expect = 3.0
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 270 VSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVD------PAIMGVGPAVAIPAAVKS 323
+ +G+G ++L + A R+G I + G D P G G +A+ A++
Sbjct: 248 IGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSG-DAHHITQPPEDGKGAVLAMTRALRQ 306
Query: 324 AGLQLDDID 332
+GL + ID
Sbjct: 307 SGLCPNQID 315
>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW
YORK research center for structural genomics; HET: TLA;
1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A
3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A
3quc_A 3qub_A 3qu4_A
Length = 243
Score = 28.4 bits (64), Expect = 3.7
Identities = 24/137 (17%), Positives = 39/137 (28%), Gaps = 48/137 (35%)
Query: 11 LLEHLRPSN------SSSHNYESILSASACAAGDSAAYHRTSVYGDDVVIVAAYRTALCK 64
LL+ ++ + S + G + V DV
Sbjct: 117 LLQKVKSEGLTPMVVTGSGQLSLLERLEHNFPGMF--HKELMVTAFDVK----------Y 164
Query: 65 SKRGGFKDTYPD-DLLAPVLKAVIEKTNVDPSEVGDIVVETVPVRTVNRQCSSGLQAVAD 123
K P+ + P L A+ +K + E +V+E A
Sbjct: 165 GK--------PNPE---PYLMAL-KKGGLKADEA--VVIE---------------NAPLG 195
Query: 124 VAAAIKAGFYDIGIGAG 140
V A KAG + I + G
Sbjct: 196 VEAGHKAGIFTIAVNTG 212
>4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle
structural genomics CEN infectious disease, transferase;
2.25A {Burkholderia phymatum}
Length = 412
Score = 28.6 bits (65), Expect = 4.0
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 18/77 (23%)
Query: 310 GVGPAVAIPAAVKSAGLQLDDID----------LFEINEAFASQFVYCRNKLGLDPEKIN 359
A A+ A++ A L + I ++ E+ A+ G E++
Sbjct: 278 ASTMARAMQLALEDAKLDANAIAYVNAHGTSTDRGDVAESQATART-----FG---ERMP 329
Query: 360 VNGGALAIGHPLGTTGA 376
++ +GH LG GA
Sbjct: 330 ISSLKSYVGHTLGACGA 346
>1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET:
MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2
PDB: 1tee_A
Length = 393
Score = 28.5 bits (64), Expect = 4.8
Identities = 23/150 (15%), Positives = 46/150 (30%), Gaps = 39/150 (26%)
Query: 271 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPA------------IMGVGPAV--- 315
DG A+++ V + + V +F+ + + + +
Sbjct: 225 GDGCAALVIGASQVQEKLEPGKVVVRSSFSQLLDNTEDGIVLGVNHNGITCELSENLPGY 284
Query: 316 -------AIPAAVKSAGLQLDDIDLF-------EINEAFASQFVYCRNKLGLDPEKINVN 361
+ + GLQ+ DIDL+ +I E LG+ E +
Sbjct: 285 IFSGVAPVVTEMLWDNGLQISDIDLWAIHPGGPKIIEQSV-------RSLGISAELAAQS 337
Query: 362 GGALAIGHPLGTTGARCVATLLHEMKRRGR 391
LA G + + +L M ++
Sbjct: 338 WDVLA-RF--GNMLSVSLIFVLETMVQQAE 364
>3sj5_A Methyl-accepting chemotaxis protein; no or O2-sensing protein,
signaling protein; HET: HEM; 1.67A {Caldanaerobacter
subterraneus} PDB: 3nvr_A* 3tf0_A* 1u4h_A* 1u56_A*
3m0b_A* 1u55_A* 3tf1_A* 1xbn_A* 3nvu_A* 3eee_A* 3iqb_A*
3lah_A* 3lai_A*
Length = 188
Score = 27.9 bits (62), Expect = 5.2
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 48 YGDDVVIVAAYRTALCKSKRGGFK--DTYPDDLLAPVLKAVIEKTNVDPSEV 97
YG+DVV + + DD + + V EKT + +E+
Sbjct: 17 YGNDVVDESLKSVGW--EPDRVITPLEDIDDDEVRRIFAKVSEKTGKNVNEI 66
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET:
ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6
c.55.1.6 PDB: 2d0p_A
Length = 610
Score = 28.0 bits (62), Expect = 6.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 312 GPAVAIPAAVKSAGLQLDDIDLFEINEA 339
G A+ + AG+ + DI L INEA
Sbjct: 49 GIQEALALVARGAGIAVSDISLIRINEA 76
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain,
copper-contain periplasmic, oxidoreductase; 1.70A
{Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Length = 638
Score = 28.0 bits (62), Expect = 8.2
Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 176 SENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDP--KTGDEKPVT 233
SE G+ R E+D V AA AG F + T ++D K G + T
Sbjct: 258 SEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFI-TLGDSKTPVLDGRKKDGKDSKFT 316
>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI-
protein structure initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides
vulgatus}
Length = 247
Score = 27.3 bits (61), Expect = 8.4
Identities = 24/139 (17%), Positives = 39/139 (28%), Gaps = 52/139 (37%)
Query: 11 LLEHLRPSN------SSSHNYESILSASACAAGDSAAYHRTSVYGDDVVIVAAYRTALCK 64
+L ++ + S + + G V DV
Sbjct: 116 VLTKIKSEGLTPMVVTGSGQTSLLDRLNHNFPGIF--QANLMVTAFDV------------ 161
Query: 65 SKRGGFK---DTYPDDLLAPVLKAVIEKTNVDPSEVGDIVVETVPVRTVNRQCSSGLQAV 121
K G K + Y L A+ +K P+E +V+E A
Sbjct: 162 -KYG--KPNPEPY--------LMAL-KKGGFKPNEA--LVIE---------------NAP 192
Query: 122 ADVAAAIKAGFYDIGIGAG 140
V A + AG + I + G
Sbjct: 193 LGVQAGVAAGIFTIAVNTG 211
>3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics,
PSI-2, protein structure initiative; 1.99A {Bacillus
licheniformis} PDB: 3lm6_A
Length = 347
Score = 27.3 bits (61), Expect = 9.1
Identities = 18/126 (14%), Positives = 46/126 (36%), Gaps = 33/126 (26%)
Query: 43 HRTSVYGDDVVIVAAYRTALCKSKRGGFKD----TYPDD-------------LLAPVLKA 85
+T + + + + ++ K K G +Y + L+ +++
Sbjct: 6 KQTWEFENPLFVNSSGTAVGPKEKEGPLGHLFDKSYDEMHCNQKNWEMAERKLMEDAVQS 65
Query: 86 VIEKTNVDPSEV-----GDIVVET-----------VPVRTVNRQCSSGLQAVADVAAAIK 129
+ K N+ ++ GD++ + +P + CS+ ++++A +A I
Sbjct: 66 ALSKQNLKKEDIDIFLAGDLLNQNVTANYVARHLKIPFLCLFGACSTSMESIAISSALID 125
Query: 130 AGFYDI 135
GF
Sbjct: 126 GGFAKR 131
>1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY;
alpha-beta-alpha-beta-alpha, heterodimer, transferase;
2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1
Length = 415
Score = 27.5 bits (62), Expect = 9.1
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 310 GVGPAVAIPAAVKSAGLQLDDID 332
G AI A+ AG +D+D
Sbjct: 278 PAGLERAIRLALNDAGTGPEDVD 300
>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics,
PSI-2; 2.20A {Pseudomonas syringae PV}
Length = 233
Score = 27.2 bits (61), Expect = 9.1
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 18/61 (29%)
Query: 80 APVLKAVIEKTNVDPSEVGDIVVETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGA 139
L A +K E +V+ A+ D+ AA + +G+ +
Sbjct: 151 DLFLAA-AKKIGAPIDEC--LVIG---------------DAIWDMLAARRCKATGVGLLS 192
Query: 140 G 140
G
Sbjct: 193 G 193
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.380
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,806,798
Number of extensions: 442487
Number of successful extensions: 1365
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1268
Number of HSP's successfully gapped: 103
Length of query: 438
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 342
Effective length of database: 4,021,377
Effective search space: 1375310934
Effective search space used: 1375310934
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)