RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 013708
         (438 letters)



>d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera
           [TaxId: 350]}
          Length = 268

 Score =  188 bits (479), Expect = 9e-58
 Identities = 91/273 (33%), Positives = 135/273 (49%), Gaps = 40/273 (14%)

Query: 50  DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV------- 102
             +VI +A RTA+     G F +T   +L A V+ AV+E+  V   EV ++++       
Sbjct: 3   PSIVIASAARTAVGS-FNGAFANTPAHELGATVISAVLERAGVAAGEVNEVILGQVLPAG 61

Query: 103 ----------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTV 146
                           +      +N+   SGL+AVA     I  G   I +  G+ESM++
Sbjct: 62  EGQNPARQAAMKAGVPQEATAWGMNQLAGSGLRAVALGMQQIATGDASIIVAGGMESMSM 121

Query: 147 NPMAWEGSVNPKVKAFEQAQNCL----------LPMGVTSENVAHRFGVTRKEQDQAAVD 196
            P         K+  F+     +            MG T+ENVA ++ ++R EQD  AV 
Sbjct: 122 APHCAHLRGGVKMGDFKMIDTMIKDGLTDAFYGYHMGTTAENVAKQWQLSRDEQDAFAVA 181

Query: 197 SHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVF 256
           S  KA AA   G+FKDEI+P    IV  + GD   +T+  D+ IR   ++  +AKL+P F
Sbjct: 182 SQNKAEAAQKDGRFKDEIVP---FIVKGRKGD---ITVDADEYIRHGATLDSMAKLRPAF 235

Query: 257 KKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKG 289
            K+GT TAGN+S ++DGA A LLM  + A R+G
Sbjct: 236 DKEGTVTAGNASGLNDGAAAALLMSEAEASRRG 268


>d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus
           thermophilus [TaxId: 274]}
          Length = 273

 Score =  167 bits (424), Expect = 2e-49
 Identities = 99/280 (35%), Positives = 138/280 (49%), Gaps = 47/280 (16%)

Query: 51  DVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEVGDIVV-------- 102
           +  IV A RT + K   G      PDDLLA  L  +++++ V   EV D+          
Sbjct: 1   EAWIVEAVRTPIGK-HGGALASVRPDDLLAHALSVLVDRSGVPKEEVEDVYAGCANQAGE 59

Query: 103 ----------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTV 146
                             V   TVNR C SGL+AVA  A AI AG   + IG+G+ESM+ 
Sbjct: 60  DNRNVARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQAARAIWAGEGKVYIGSGVESMSR 119

Query: 147 NPMAWEGSVNPK----------------VKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQ 190
            P A                        V    QA      MG T+EN+A  +G+ R+EQ
Sbjct: 120 APYAVPKPERGFPTGNLVMYDTTLGWRFVNPKMQALYGTESMGETAENLAEMYGIRREEQ 179

Query: 191 DQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELA 250
           D+ A+ SH+KA  A   G+F+DE++PV      P    ++ + +  D+G R +TS+ +LA
Sbjct: 180 DRFALLSHQKAVRAWEEGRFQDEVVPV------PVKRGKEEILVEQDEGPRRDTSLEKLA 233

Query: 251 KLKPVFKKDGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGL 290
            L+PVF++ GT TAGNSS ++DGA AVLL+    A   GL
Sbjct: 234 ALRPVFREGGTVTAGNSSPLNDGAAAVLLVSDDYAKAHGL 273


>d1afwa1 c.95.1.1 (A:25-293) Thiolase {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 269

 Score =  160 bits (405), Expect = 7e-47
 Identities = 102/267 (38%), Positives = 142/267 (53%), Gaps = 40/267 (14%)

Query: 50  DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEK----TNVDPSEVGDIVV--- 102
           +DVVIVAA R+A+ K  +G FKD   D LL   L   I +       D + + ++     
Sbjct: 10  EDVVIVAANRSAIGKGFKGAFKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNV 69

Query: 103 --------------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLE 142
                                + P   +NRQCSSGL AV D+A  IK G  DIG+  G+E
Sbjct: 70  LNVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVNDIANKIKVGQIDIGLALGVE 129

Query: 143 SMTVNPMA---WEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHR 199
           SMT N           + +++   +A+ CL+PMG+T+ENVA  F ++RK+QD+ A +S++
Sbjct: 130 SMTNNYKNVNPLGMISSEELQKNREAKKCLIPMGITNENVAANFKISRKDQDEFAANSYQ 189

Query: 200 KAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFKKD 259
           KA  A   G F+DEI+P+                   D+G RPN +   L+ ++P F KD
Sbjct: 190 KAYKAKNEGLFEDEILPI---------KLPDGSICQSDEGPRPNVTAESLSSIRPAFIKD 240

Query: 260 -GTTTAGNSSQVSDGAGAVLLMKRSVA 285
            GTTTAGN+SQVSDG   VLL +RSVA
Sbjct: 241 RGTTTAGNASQVSDGVAGVLLARRSVA 267


>d1wdkc1 c.95.1.1 (C:2-263) Fatty oxidation complex beta subunit
           (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId:
           296]}
          Length = 262

 Score =  155 bits (391), Expect = 7e-45
 Identities = 89/262 (33%), Positives = 129/262 (49%), Gaps = 33/262 (12%)

Query: 50  DDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEK-TNVDPSEVGDIVV------ 102
            DVVIV   RT + +SK G  ++T  +D+ A ++  V+E+ + VDP EV D++       
Sbjct: 5   RDVVIVDFGRTPMGRSKGGMHRNTRAEDMSAHLISKVLERNSKVDPGEVEDVIWGCVNQT 64

Query: 103 ------------------ETVPVRTVNRQCSSGLQAVADVAAAIKAGFYDIGIGAGLESM 144
                              T   +TV+R C S + A+   A AI  G  D+ +  G+E M
Sbjct: 65  LEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTAAQAIMTGNGDVFVVGGVEHM 124

Query: 145 TVNPMAWEGSVNPKVKAFEQAQNCLLPMGVTSENVAHRFGVTRKEQDQAAVDSHRKAAAA 204
               M     V+P       A      MG+T+E +    G++R++QD  AV SH+ A  A
Sbjct: 125 GHVSMMH--GVDPNPHMSLYAAKASGMMGLTAEMLGKMHGISREQQDAFAVRSHQLAHKA 182

Query: 205 TAAGKFKDEIIPVATKIVDPKTGDEKPVTISVDDGIRPNTSVSELAKLKPVFK-KDGTTT 263
           T  GKFKDEIIP+     +             D+ IRP+T++  LA LKP F  K GT T
Sbjct: 183 TVEGKFKDEIIPMQGYDENG-----FLKIFDYDETIRPDTTLESLAALKPAFNPKGGTVT 237

Query: 264 AGNSSQVSDGAGAVLLMKRSVA 285
           AG SSQ++DGA  +++M    A
Sbjct: 238 AGTSSQITDGASCMIVMSAQRA 259


>d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea
           ramigera [TaxId: 350]}
          Length = 124

 Score =  146 bits (371), Expect = 1e-43
 Identities = 64/122 (52%), Positives = 81/122 (66%), Gaps = 2/122 (1%)

Query: 293 LGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLG 352
           LG   ++A VGVDP +MG GP  A   A++ AG ++ D+DL E NEAFA+Q       LG
Sbjct: 4   LGRIVSWATVGVDPKVMGTGPIPASRKALERAGWKIGDLDLVEANEAFAAQACAVNKDLG 63

Query: 353 LDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVF 412
            DP  +NVNGGA+AIGHP+G +GAR + TLL EMKRRG   R G+ ++CIG GMG A   
Sbjct: 64  WDPSIVNVNGGAIAIGHPIGASGARILNTLLFEMKRRG--ARKGLATLCIGGGMGVAMCI 121

Query: 413 ER 414
           E 
Sbjct: 122 ES 123


>d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 124

 Score =  145 bits (368), Expect = 3e-43
 Identities = 76/126 (60%), Positives = 97/126 (76%), Gaps = 4/126 (3%)

Query: 289 GLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCR 348
            LP+LG +  F  VGV P IMGVGPA AIP  +++ GLQ+ DID+FEINEAFA+Q +YC 
Sbjct: 2   NLPVLGRYIDFQTVGVPPEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQALYCI 61

Query: 349 NKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGA 408
           +KLG+D  K+N  GGA+A+GHPLG TGAR VAT+L E+K+     + GV+SMCIGTGMGA
Sbjct: 62  HKLGIDLNKVNPRGGAIALGHPLGCTGARQVATILRELKKD----QIGVVSMCIGTGMGA 117

Query: 409 AAVFER 414
           AA+F +
Sbjct: 118 AAIFIK 123


>d1ulqa2 c.95.1.1 (A:276-400) Beta-ketoadipyl CoA thiolase {Thermus
           thermophilus [TaxId: 274]}
          Length = 125

 Score =  130 bits (329), Expect = 1e-37
 Identities = 58/124 (46%), Positives = 80/124 (64%), Gaps = 4/124 (3%)

Query: 293 LGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNK-- 350
           L   R  A  GV P IMG+GP  A   A++ AGL   D+ L E+NEAFA+Q +    +  
Sbjct: 3   LARVRAIAVAGVPPRIMGIGPVPATRKALERAGLSFSDLGLIELNEAFAAQALAVLREWS 62

Query: 351 LGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAA 410
           L ++ +++N NGGA+A+GHPLG +GAR + TL+HEM+RR    +FG+ +MCIG G G A 
Sbjct: 63  LSMEDQRLNPNGGAIALGHPLGASGARILTTLVHEMRRRK--VQFGLATMCIGVGQGIAV 120

Query: 411 VFER 414
           V E 
Sbjct: 121 VVEG 124


>d1wdkc2 c.95.1.1 (C:264-391) Fatty oxidation complex beta subunit
           (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId:
           296]}
          Length = 128

 Score =  125 bits (316), Expect = 2e-35
 Identities = 66/129 (51%), Positives = 82/129 (63%), Gaps = 5/129 (3%)

Query: 289 GLPILGVFRTFAAVGVDPAIMGVGPAVAIPAAVKSAGLQLDDIDLFEINEAFASQFVYCR 348
           GL  L V R+ A  GVDPAIMG GP  A   A+K AGL + DID  E+NEAFA+Q +   
Sbjct: 1   GLEPLAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLNMADIDFIELNEAFAAQALPVL 60

Query: 349 N---KLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTG 405
                L    EK+N++GGA+A+GHP G +GAR   TLL+ MK+ G    FG+ +MCIG G
Sbjct: 61  KDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGG--TFGLSTMCIGLG 118

Query: 406 MGAAAVFER 414
            G A VFER
Sbjct: 119 QGIATVFER 127


>d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 372

 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 23/168 (13%), Positives = 51/168 (30%), Gaps = 28/168 (16%)

Query: 271 SDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPA------------IMGVGPAV--- 315
            DG  A+++    V  +     + V  +F+ +  +                 +   +   
Sbjct: 204 GDGCAALVIGASQVQEKLEPGKVVVRSSFSQLLDNTEDGIVLGVNHNGITCELSENLPGY 263

Query: 316 -------AIPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIG 368
                   +   +   GLQ+ DIDL+ I+             LG+  E    +     + 
Sbjct: 264 IFSGVAPVVTEMLWDNGLQISDIDLWAIHPGGPKIIEQSVRSLGISAELAAQS---WDVL 320

Query: 369 HPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMG---AAAVFE 413
              G   +  +  +L  M ++    +     +    G G      +F+
Sbjct: 321 ARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFD 368


>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal
           domain {Paracoccus denitrificans [TaxId: 266]}
          Length = 459

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 176 SENVAHRFGVTRKEQDQAAVDSHRKAAAATAAGKFKDEIIPVATKIVDPKTGDEKPVTIS 235
           SE       +T  E D   V +  +   A AAG ++ E+  V    VD +       T  
Sbjct: 214 SEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQ-ELNGVKV--VDGRKEASSLFTRY 270

Query: 236 VDDGIRPN 243
           +     P+
Sbjct: 271 IPIANNPH 278


>d1u0ma2 c.95.1.2 (A:202-349) Putative polyketide synthase SCO1206
           {Streptomyces coelicolor [TaxId: 1902]}
          Length = 148

 Score = 31.5 bits (71), Expect = 0.088
 Identities = 15/102 (14%), Positives = 28/102 (27%), Gaps = 11/102 (10%)

Query: 317 IPAAVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGA 376
           +       G    D+D + ++             L +DP               L   G 
Sbjct: 49  LKELAGEHGWDASDLDFYIVHAGGPRILDDLSTFLEVDPHAFR------FSRATLTEYGN 102

Query: 377 RCVATLLHEMKRRGRDCRF--GVISMCIGTGMG---AAAVFE 413
              A +L  ++R   +     G   +  G G G     ++  
Sbjct: 103 IASAVVLDALRRLFDEGGVEEGARGLLAGFGPGITAEMSLGC 144


>d1bi5a2 c.95.1.2 (A:236-389) Chalcone synthase {Alfalfa (Medicago
           sativa) [TaxId: 3879]}
          Length = 154

 Score = 30.3 bits (68), Expect = 0.24
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 7/93 (7%)

Query: 320 AVKSAGLQLDDIDLFEINEAFASQFVYCRNKLGLDPEKINVNGGALAIGHPLGTTGARCV 379
           A +  G+   +   +  +    +       KL L PEK+N     L+     G   + CV
Sbjct: 51  AFEPLGISDYNSIFWIAHPGGPAILDQVEQKLALKPEKMNATREVLSEY---GNMSSACV 107

Query: 380 ATLLHEMKRR----GRDCRFGVISMCIGTGMGA 408
             +L EM+++    G       +   +  G G 
Sbjct: 108 LFILDEMRKKSTQNGLKTTGEGLEWGVLFGFGP 140


>d1t95a1 a.5.8.1 (A:87-161) Hypothetical protein AF0491, middle
           domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 75

 Score = 26.9 bits (60), Expect = 1.2
 Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 11/57 (19%)

Query: 209 KFKDEIIPVATKIVDPKTGDEKPVTI------SVDDGIRPNTSVSELA-----KLKP 254
           K K  I  ++   +DP+T    P +            I    SV          LKP
Sbjct: 19  KRKQIINFISRNTIDPRTNAPHPPSRIERALEEAKVHIDIFKSVEAQVKDIVKALKP 75


>d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative
           beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor
           [TaxId: 1902]}
          Length = 208

 Score = 28.5 bits (62), Expect = 1.4
 Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 113 QCSSGLQAVADVAAAIKAGFYDIGIGAGLESMTVNPMAWEG 153
           + + GL A+      I+ G   + +  G++S  ++P  W  
Sbjct: 159 EQAGGLDALGHARRTIRRG-TPLVVSGGVDSA-LDPWGWVS 197


>d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 338

 Score = 28.6 bits (64), Expect = 1.4
 Identities = 26/174 (14%), Positives = 45/174 (25%), Gaps = 37/174 (21%)

Query: 259 DGTTTAGNSSQVSDGAGAVLLMKRSVAMRKGLPILGVFRTFAAVGVDPAIMGVGPAVA-I 317
                   +S                 +R  +P++        +G +  I+GV      +
Sbjct: 45  VAEHEGKMASDFVKP------------VRYDVPVVSSVEKAKEMGAEVLIIGVSNPGGYL 92

Query: 318 PAAVKS-------------AGLQLDDIDLFEINEAFASQFVYC----RNKLGLDPEKINV 360
              + +             +GL        E  +                L LD  +  +
Sbjct: 93  EEQIATLVKKALSLGMDVISGLHFKISQQTEFLKIAHENGTRIIDIRIPPLELDVLRGGI 152

Query: 361 NGGALAIGHPLGT---TGARCVATLLHE-MKRRGRDCRF---GVISMCIGTGMG 407
               + +    GT    G R  A  L E    +G    F   G   + IG   G
Sbjct: 153 YRKKIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQTGILIGADAG 206


>d1tqya2 c.95.1.1 (A:219-423) Actinorhodin polyketide putative
           beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor
           [TaxId: 1902]}
          Length = 205

 Score = 28.2 bits (62), Expect = 1.7
 Identities = 6/27 (22%), Positives = 11/27 (40%)

Query: 271 SDGAGAVLLMKRSVAMRKGLPILGVFR 297
           ++GA   +L     A+ +G  I     
Sbjct: 20  AEGAAMFVLEDYDSALARGARIHAEIS 46


>d1u55a_ d.278.1.1 (A:) Methyl-accepting chemotaxis protein
          {Thermoanaerobacter tengcongensis [TaxId: 119072]}
          Length = 188

 Score = 27.9 bits (62), Expect = 1.8
 Identities = 12/51 (23%), Positives = 22/51 (43%)

Query: 47 VYGDDVVIVAAYRTALCKSKRGGFKDTYPDDLLAPVLKAVIEKTNVDPSEV 97
          +YG+DVV  +         +     +   DD +  +   V EKT  + +E+
Sbjct: 16 LYGNDVVDESLKSVGWEPDRVITPLEDIDDDEVRRIFAKVSEKTGKNVNEI 66


>d2d0oa2 c.55.1.6 (A:1-92,A:255-403) Diol dehydratase-reactivating
           factor large subunit DdrA {Klebsiella oxytoca [TaxId:
           571]}
          Length = 241

 Score = 27.5 bits (61), Expect = 3.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 316 AIPAAVKSAGLQLDDIDLFEINEA 339
           A+    + AG+ + DI L  INEA
Sbjct: 53  ALALVARGAGIAVSDISLIRINEA 76


>d1ee0a2 c.95.1.2 (A:236-395) Pyrone synthase (PyS, chalcone
           synthase 2) {Gerbera hybrid cultivar [TaxId: 18101]}
          Length = 160

 Score = 26.9 bits (59), Expect = 3.7
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 7/66 (10%)

Query: 347 CRNKLGLDPEKINVNGGALAIGHPLGTTGARCVATLLHEMKRR----GRDCRFGVISMCI 402
              KL L  +K+  +   L+     G   + CV  ++ E+++R    G+      +   +
Sbjct: 83  VERKLNLKEDKLRASRHVLSEY---GNLISACVLFIIDEVRKRSMAEGKSTTGEGLDCGV 139

Query: 403 GTGMGA 408
             G G 
Sbjct: 140 LFGFGP 145


>d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale
           cress (Arabidopsis thaliana), mitochondrial isoform
           [TaxId: 3702]}
          Length = 270

 Score = 26.1 bits (56), Expect = 7.5
 Identities = 7/22 (31%), Positives = 13/22 (59%)

Query: 271 SDGAGAVLLMKRSVAMRKGLPI 292
            +G+G ++L +   A R+G  I
Sbjct: 249 GEGSGVIVLEEYEHAKRRGAKI 270


>d1nbwa2 c.55.1.6 (A:2-91,A:257-405) ATPase domain of the glycerol
           dehydratase reactivase alpha subunit {Klebsiella
           pneumoniae [TaxId: 573]}
          Length = 239

 Score = 25.9 bits (57), Expect = 8.8
 Identities = 6/24 (25%), Positives = 11/24 (45%)

Query: 316 AIPAAVKSAGLQLDDIDLFEINEA 339
           A+  A+      + D+    +NEA
Sbjct: 51  ALEQALAKTPWSMSDVSRIYLNEA 74


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0434    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,573,624
Number of extensions: 73087
Number of successful extensions: 263
Number of sequences better than 10.0: 1
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 26
Length of query: 438
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 350
Effective length of database: 1,199,356
Effective search space: 419774600
Effective search space used: 419774600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.3 bits)