BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013709
(438 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BP5|M Chain M, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Non-Canonical Internalization Peptide
Vedyeqglsg
pdb|2VGL|M Chain M, Ap2 Clathrin Adaptor Core
pdb|2JKR|M Chain M, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|U Chain U, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|M Chain M, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|U Chain U, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 435
Score = 425 bits (1093), Expect = e-119, Method: Compositional matrix adjust.
Identities = 207/438 (47%), Positives = 297/438 (67%), Gaps = 12/438 (2%)
Query: 7 AIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRXXXX 66
++ N +G+VLI+R+YRDD+G N VDAFR +++ ++ PV I SFF+++
Sbjct: 4 GLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNI 63
Query: 67 XXXXXXXXXXXXXXXFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQ 126
F+F+ + + +YFG E+ I+NNFVLIYELLDEI+DFGYPQ
Sbjct: 64 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFG-KISEENIKNNFVLIYELLDEILDFGYPQ 122
Query: 127 NLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVE 186
N LK +ITQ+G++S +K + T QVTG +GWRREG+ Y++NE+FLD++E
Sbjct: 123 NSETGALKTFITQQGIKSQHQTKEEQSQI---TSQVTGQIGWRREGIKYRRNELFLDVLE 179
Query: 187 SVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPT-KSGK- 244
SVNLLMS +G VL V+G+++MK +LSGMP+ K G+NDKI +EK+ + + T KSGK
Sbjct: 180 SVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQ 239
Query: 245 TIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRT 304
+I +DD TFHQCV L++F+SE+++SF+PPDGEFELM+YR T+ + LPFRV+P ++E+GRT
Sbjct: 240 SIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRT 299
Query: 305 RMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKFP 364
++EV V IKS F + A + ++IP P T+ G+AKY AS + +VWKI++
Sbjct: 300 KLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMA 359
Query: 365 GQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRFLKVWEK----SGYN 420
G E +SAE+EL+ T +KK W RPPI M F+VP F SGL+VR+LKV+E S ++
Sbjct: 360 GMKESQISAEIELLPT-NDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHD 417
Query: 421 TVEWVRYITKAGSYEIRC 438
++WVRYI ++G YE RC
Sbjct: 418 VIKWVRYIGRSGIYETRC 435
>pdb|2XA7|M Chain M, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 446
Score = 420 bits (1079), Expect = e-118, Method: Compositional matrix adjust.
Identities = 205/449 (45%), Positives = 294/449 (65%), Gaps = 23/449 (5%)
Query: 7 AIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRXXXX 66
++ N +G+VLI+R+YRDD+G N VDAFR +++ ++ PV I SFF+++
Sbjct: 4 GLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNI 63
Query: 67 XXXXXXXXXXXXXXXFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQ 126
F+F+ + + +YFG E+ I+NNFVLIYELLDEI+DFGYPQ
Sbjct: 64 WLAAVTKQNVNAAMVFEFLYKMCDVMAAYFG-KISEENIKNNFVLIYELLDEILDFGYPQ 122
Query: 127 NLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVE 186
N LK +ITQ+G++S +K + T QVTG +GWRREG+ Y++NE+FLD++E
Sbjct: 123 NSETGALKTFITQQGIKSQHQTKEEQSQI---TSQVTGQIGWRREGIKYRRNELFLDVLE 179
Query: 187 SVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEK-------------ES 233
SVNLLMS +G VL V+G+++MK +LSGMP+ K G+NDKI +EK E
Sbjct: 180 SVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSMEQ 239
Query: 234 QLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFR 293
+L S ++I +DD TFHQCV L++F+SE+++SF+PPDGEFELM+YR T+ + LPFR
Sbjct: 240 KLISEEDLGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFR 299
Query: 294 VLPTIKELGRTRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASI 353
V+P ++E+GRT++EV V IKS F + A + ++IP P T+ G+AKY AS
Sbjct: 300 VIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASE 359
Query: 354 DCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRFLKV 413
+ +VWKI++ G E +SAE+EL+ T +KK W RPPI M F+VP F SGL+VR+LKV
Sbjct: 360 NAIVWKIKRMAGMKESQISAEIELLPT-NDKKKWARPPISMNFEVP-FAPSGLKVRYLKV 417
Query: 414 WEK----SGYNTVEWVRYITKAGSYEIRC 438
+E S ++ ++WVRYI ++G YE RC
Sbjct: 418 FEPKLNYSDHDVIKWVRYIGRSGIYETRC 446
>pdb|1W63|M Chain M, Ap1 Clathrin Adaptor Core
pdb|1W63|N Chain N, Ap1 Clathrin Adaptor Core
pdb|1W63|O Chain O, Ap1 Clathrin Adaptor Core
pdb|1W63|P Chain P, Ap1 Clathrin Adaptor Core
pdb|1W63|R Chain R, Ap1 Clathrin Adaptor Core
pdb|1W63|V Chain V, Ap1 Clathrin Adaptor Core
Length = 423
Score = 363 bits (932), Expect = e-100, Method: Compositional matrix adjust.
Identities = 193/437 (44%), Positives = 270/437 (61%), Gaps = 16/437 (3%)
Query: 3 VAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGT-CPVRQIGGCSFFYM 61
++ASA+Y L+L+G VLI R YR DV + V+ F +M+ +E G P+ GG F ++
Sbjct: 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWI 60
Query: 62 RXXXXXXXXXXXXXXXXXXXFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMD 121
+ F F+ + V +F YF +E++IR+NFV+IYELLDE+MD
Sbjct: 61 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFK-ELEEESIRDNFVIIYELLDELMD 119
Query: 122 FGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVF 181
FGYPQ +IL+ +ITQEG + T P P AT VT AV WR EG+ Y+KNEVF
Sbjct: 120 FGYPQTTDSKILQEFITQEGHKLE-----TGAPRPPAT--VTNAVSWRSEGIKYRKNEVF 172
Query: 182 LDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPTK 241
LD++E+VNLL+S+ G+VLR ++ G I M+ FLSGMP+L+LGLNDK+ + + KS
Sbjct: 173 LDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRGKS---- 228
Query: 242 SGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKEL 301
K++EL+DV FHQCV L+RF +++T+SF+PPDGEFELM YR+ V + I++
Sbjct: 229 --KSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKH 286
Query: 302 GRTRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIR 361
+R+E VK KS F + A V I IPVP F+ T G K+ +VW ++
Sbjct: 287 SHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSVK 346
Query: 362 KFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRFLKVWEKSGYNT 421
FPG E M A L S AE K +PPI ++F++P FT SG++VR+LK+ EKSGY
Sbjct: 347 SFPGGKEYLMRAHFGLPSVEAEDKE-GKPPISVKFEIPYFTTSGIQVRYLKIIEKSGYQA 405
Query: 422 VEWVRYITKAGSYEIRC 438
+ WVRYIT+ G Y++R
Sbjct: 406 IPWVRYITQNGDYQLRT 422
>pdb|1I31|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor,
Complexed With Egfr Internalization Peptide Fyralm At
2.5 A Resolution
Length = 314
Score = 324 bits (831), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 159/319 (49%), Positives = 226/319 (70%), Gaps = 11/319 (3%)
Query: 126 QNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIV 185
QN LK +ITQ+G++S +K + T QVTG +GWRREG+ Y++NE+FLD++
Sbjct: 1 QNSETGALKTFITQQGIKSQHQTKEEQSQI---TSQVTGQIGWRREGIKYRRNELFLDVL 57
Query: 186 ESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPT-KSGK 244
ESVNLLMS +G VL V+G+++MK +LSGMP+ K G+NDKI +EK+ + + T KSGK
Sbjct: 58 ESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGK 117
Query: 245 -TIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGR 303
+I +DD TFHQCV L++F+SE+++SF+PPDGEFELM+YR T+ + LPFRV+P ++E+GR
Sbjct: 118 QSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGR 177
Query: 304 TRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKF 363
T++EV V IKS F + A + ++IP P T+ G+AKY AS + +VWKI++
Sbjct: 178 TKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRM 237
Query: 364 PGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRFLKVWEK----SGY 419
G E +SAE+EL+ T +KK W RPPI M F+VP F SGL+VR+LKV+E S +
Sbjct: 238 AGMKESQISAEIELLPT-NDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDH 295
Query: 420 NTVEWVRYITKAGSYEIRC 438
+ ++WVRYI ++G YE RC
Sbjct: 296 DVIKWVRYIGRSGIYETRC 314
>pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Egfr Internalization Peptide Fyralm
Length = 321
Score = 324 bits (830), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 159/319 (49%), Positives = 226/319 (70%), Gaps = 11/319 (3%)
Query: 126 QNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIV 185
QN LK +ITQ+G++S +K + T QVTG +GWRREG+ Y++NE+FLD++
Sbjct: 8 QNSETGALKTFITQQGIKSQHQTKEEQSQI---TSQVTGQIGWRREGIKYRRNELFLDVL 64
Query: 186 ESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPT-KSGK 244
ESVNLLMS +G VL V+G+++MK +LSGMP+ K G+NDKI +EK+ + + T KSGK
Sbjct: 65 ESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGK 124
Query: 245 -TIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGR 303
+I +DD TFHQCV L++F+SE+++SF+PPDGEFELM+YR T+ + LPFRV+P ++E+GR
Sbjct: 125 QSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGR 184
Query: 304 TRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKF 363
T++EV V IKS F + A + ++IP P T+ G+AKY AS + +VWKI++
Sbjct: 185 TKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRM 244
Query: 364 PGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRFLKVWEK----SGY 419
G E +SAE+EL+ T +KK W RPPI M F+VP F SGL+VR+LKV+E S +
Sbjct: 245 AGMKESQISAEIELLPT-NDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDH 302
Query: 420 NTVEWVRYITKAGSYEIRC 438
+ ++WVRYI ++G YE RC
Sbjct: 303 DVIKWVRYIGRSGIYETRC 321
>pdb|1BXX|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Tgn38 Internalization Peptide Dyqrln
pdb|1HES|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With P-Selectin Internalization Peptide
Shlgtygvftnaa
Length = 285
Score = 302 bits (773), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 144/279 (51%), Positives = 205/279 (73%), Gaps = 8/279 (2%)
Query: 166 VGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLND 225
+GWRREG+ Y++NE+FLD++ESVNLLMS +G VL V+G+++MK +LSGMP+ K G+ND
Sbjct: 9 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMND 68
Query: 226 KIGLEKESQLKSRPT-KSGK-TIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYR 283
KI +EK+ + + T KSGK +I +DD TFHQCV L++F+SE+++SF+PPDGEFELM+YR
Sbjct: 69 KIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYR 128
Query: 284 ITEGVNLPFRVLPTIKELGRTRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVT 343
T+ + LPFRV+P ++E+GRT++EV V IKS F + A + ++IP P T+
Sbjct: 129 TTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICM 188
Query: 344 SGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTA 403
G+AKY AS + +VWKI++ G E +SAE+EL+ T +KK W RPPI M F+VP F
Sbjct: 189 KGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPT-NDKKKWARPPISMNFEVP-FAP 246
Query: 404 SGLRVRFLKVWEK----SGYNTVEWVRYITKAGSYEIRC 438
SGL+VR+LKV+E S ++ ++WVRYI ++G YE RC
Sbjct: 247 SGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 285
>pdb|2PR9|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Gabaa Receptor-Gamma2 Subunit-Derived
Internalization Peptide Deeygyecl
pdb|3H85|A Chain A, Molecular Basis For The Association Of Pipki Gamma-P90
With The Clathrin Adaptor Ap-2
Length = 299
Score = 301 bits (772), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 144/279 (51%), Positives = 205/279 (73%), Gaps = 8/279 (2%)
Query: 166 VGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLND 225
+GWRREG+ Y++NE+FLD++ESVNLLMS +G VL V+G+++MK +LSGMP+ K G+ND
Sbjct: 23 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMND 82
Query: 226 KIGLEKESQLKSRPT-KSGK-TIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYR 283
KI +EK+ + + T KSGK +I +DD TFHQCV L++F+SE+++SF+PPDGEFELM+YR
Sbjct: 83 KIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYR 142
Query: 284 ITEGVNLPFRVLPTIKELGRTRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVT 343
T+ + LPFRV+P ++E+GRT++EV V IKS F + A + ++IP P T+
Sbjct: 143 TTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICM 202
Query: 344 SGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTA 403
G+AKY AS + +VWKI++ G E +SAE+EL+ T +KK W RPPI M F+VP F
Sbjct: 203 KGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPT-NDKKKWARPPISMNFEVP-FAP 260
Query: 404 SGLRVRFLKVWEK----SGYNTVEWVRYITKAGSYEIRC 438
SGL+VR+LKV+E S ++ ++WVRYI ++G YE RC
Sbjct: 261 SGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 299
>pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Ctla-4 Internalization Peptide
Ttgvyvkmppt
Length = 288
Score = 290 bits (743), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 140/274 (51%), Positives = 200/274 (72%), Gaps = 8/274 (2%)
Query: 171 EGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLE 230
EG+ Y++NE+FLD++ESVNLLMS +G VL V+G+++MK +LSGMP+ K G+NDKI +E
Sbjct: 17 EGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIE 76
Query: 231 KESQLKSRPT-KSGK-TIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGV 288
K+ + + T KSGK +I +DD TFHQCV L++F+SE+++SF+PPDGEFELM+YR T+ +
Sbjct: 77 KQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDI 136
Query: 289 NLPFRVLPTIKELGRTRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAK 348
LPFRV+P ++E+GRT++EV V IKS F + A + ++IP P T+ G+AK
Sbjct: 137 ILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAK 196
Query: 349 YNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRV 408
Y AS + +VWKI++ G E +SAE+EL+ T +KK W RPPI M F+VP F SGL+V
Sbjct: 197 YKASENAIVWKIKRMAGMKESQISAEIELLPT-NDKKKWARPPISMNFEVP-FAPSGLKV 254
Query: 409 RFLKVWEK----SGYNTVEWVRYITKAGSYEIRC 438
R+LKV+E S ++ ++WVRYI ++G YE RC
Sbjct: 255 RYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 288
>pdb|3ML6|A Chain A, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|B Chain B, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|C Chain C, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|D Chain D, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|E Chain E, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|F Chain F, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
Length = 385
Score = 283 bits (724), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 137/268 (51%), Positives = 195/268 (72%), Gaps = 8/268 (2%)
Query: 177 KNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLK 236
+NE+FLD++ESVNLLMS +G VL V+G+++MK +LSGMP+ K G+NDKI +EK+ +
Sbjct: 120 RNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGT 179
Query: 237 SRPT-KSGK-TIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRV 294
+ T KSGK +I +DD TFHQCV L++F+SE+++SF+PPDGEFELM+YR T+ + LPFRV
Sbjct: 180 ADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRV 239
Query: 295 LPTIKELGRTRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASID 354
+P ++E+GRT++EV V IKS F + A + ++IP P T+ G+AKY AS +
Sbjct: 240 IPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASEN 299
Query: 355 CLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRFLKVW 414
+VWKI++ G E +SAE+EL+ T +KK W RPPI M F+VP F SGL+VR+LKV+
Sbjct: 300 AIVWKIKRMAGMKESQISAEIELLPT-NDKKKWARPPISMNFEVP-FAPSGLKVRYLKVF 357
Query: 415 EK----SGYNTVEWVRYITKAGSYEIRC 438
E S ++ ++WVRYI ++G YE RC
Sbjct: 358 EPKLNYSDHDVIKWVRYIGRSGIYETRC 385
>pdb|4EN2|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
pdb|4EN2|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
Length = 266
Score = 257 bits (656), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 127/271 (46%), Positives = 177/271 (65%), Gaps = 7/271 (2%)
Query: 168 WRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKI 227
WR EG+ Y+KNEVFLD++E+VNLL+S+ G+VLR ++ G I M+ FLSGMP+L+LGLNDK+
Sbjct: 2 WRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKV 61
Query: 228 GLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEG 287
+ + KS K++EL+DV FHQCV L+RF +++T+SF+PPDGEFELM YR+
Sbjct: 62 LFDNTGRGKS------KSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTH 115
Query: 288 VNLPFRVLPTIKELGRTRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRA 347
V + I++ +R+E VK KS F + A V I IPVP F+ T G
Sbjct: 116 VKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSV 175
Query: 348 KYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLR 407
K+ +VW ++ FPG E M A L S AE K +PPI ++F++P FT SG++
Sbjct: 176 KWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEAEDKE-GKPPISVKFEIPYFTTSGIQ 234
Query: 408 VRFLKVWEKSGYNTVEWVRYITKAGSYEIRC 438
VR+LK+ EKSGY + WVRYIT+ G Y++R
Sbjct: 235 VRYLKIIEKSGYQALPWVRYITQNGDYQLRT 265
>pdb|4EMZ|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
pdb|4EMZ|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
Length = 266
Score = 248 bits (634), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 123/271 (45%), Positives = 173/271 (63%), Gaps = 7/271 (2%)
Query: 168 WRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKI 227
WR EG+ Y+KNEVFLD++E+VNLL+S+ G+VLR ++ G I + FLSG P+L+LGLNDK+
Sbjct: 2 WRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKXRVFLSGXPELRLGLNDKV 61
Query: 228 GLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEG 287
+ + KS K++EL+DV FHQCV L+RF +++T+SF+PPDGEFEL YR+
Sbjct: 62 LFDNTGRGKS------KSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELXSYRLNTH 115
Query: 288 VNLPFRVLPTIKELGRTRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRA 347
V + I++ +R+E VK KS F + A V I IPVP F+ T G
Sbjct: 116 VKPLIWIESVIEKHSHSRIEYXVKAKSQFKRRSTANNVEIHIPVPNDADSPKFKTTVGSV 175
Query: 348 KYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLR 407
K+ +VW ++ FPG E A L S AE K +PPI ++F++P FT SG++
Sbjct: 176 KWVPENSEIVWSVKSFPGGKEYLXRAHFGLPSVEAEDKE-GKPPISVKFEIPYFTTSGIQ 234
Query: 408 VRFLKVWEKSGYNTVEWVRYITKAGSYEIRC 438
VR+LK+ EKSGY + WVRYIT+ G Y++R
Sbjct: 235 VRYLKIIEKSGYQALPWVRYITQNGDYQLRT 265
>pdb|3L81|A Chain A, Crystal Structure Of Adaptor Protein Complex 4 (Ap-4) Mu4
Su Terminal Domain, In Complex With A Sorting Peptide
From The Precursor Protein (App)
Length = 301
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 161/277 (58%), Gaps = 22/277 (7%)
Query: 176 KKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQL 235
+KNEVFLD+VE +++L++S GS+L+ DV G+I +K FL ++++GL ++ + K S+L
Sbjct: 31 QKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFSVGK-SEL 89
Query: 236 KSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGV--NLPFR 293
+ G I +D+V+FH VNL F S + + PP GE +M+Y++++ + LPFR
Sbjct: 90 RGY----GPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPFR 145
Query: 294 VLPTIK-ELGRTRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNAS 352
+ P+++ + G R++V +K++ +K AL V + +P+P+ S +++S K +
Sbjct: 146 LFPSVQWDRGSGRLQVYLKLRCDLLSKSQALNVRLHLPLPRGVVSLSQELSSPEQKAELA 205
Query: 353 IDCLVWKIRKFPGQTEPTMSAEVEL----------ISTMAEKKSWTRPPIQMEFQVPMFT 402
L W + + G ++ + ++++ +ST A P + F++P T
Sbjct: 206 EGALRWDLPRVQGGSQLSGLFQMDVPGPPGPPSHGLSTSASPLGLG--PASLSFELPRHT 263
Query: 403 ASGLRVRFLKV-WEKSG-YNTVEWVRYITKAGSYEIR 437
SGL+VRFL++ + SG N +WVR+++ + +Y IR
Sbjct: 264 CSGLQVRFLRLAFRPSGNANPHKWVRHLSHSDAYVIR 300
>pdb|4IKN|A Chain A, Crystal Structure Of Adaptor Protein Complex 3 (ap-3) Mu3a
Subunit C- Terminal Domain, In Complex With A Sorting
Peptide From Tgn38
Length = 261
Score = 128 bits (321), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 134/278 (48%), Gaps = 31/278 (11%)
Query: 166 VGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLG-LN 224
+ WRR G+ Y NE + D+VE ++ ++ GS + ++ G I LSGMPDL L +N
Sbjct: 8 IPWRRAGVKYTNNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMN 67
Query: 225 DKIGLEKESQLKSRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRI 284
++ LDDV+FH C+ R+ SE+ +SF+PPDG F L+ YR+
Sbjct: 68 PRL--------------------LDDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRV 107
Query: 285 TEG--VNLPFRVLPTI--KELGRT-RMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTS 339
+ V +P V I KE R ++ + K G + G+ + + +PK +
Sbjct: 108 SSQNLVAIPVYVKHNISFKENSSCGRFDITIGPKQNMGKTI--EGITVTVHMPKVVLNMN 165
Query: 340 FQVTSGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVP 399
T G ++ L W + K Q P++ V L S K P + ++F++
Sbjct: 166 LTPTQGSYTFDPVTKVLAWDVGKITPQKLPSLKGLVNLQS--GAPKPEENPNLNIQFKIQ 223
Query: 400 MFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYEIR 437
SGL+V L ++ + Y + V+YITKAG +++R
Sbjct: 224 QLAISGLKVNRLDMYGEK-YKPFKGVKYITKAGKFQVR 260
>pdb|2D4W|A Chain A, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
Nt3060
pdb|2D4W|B Chain B, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
Nt3060
Length = 504
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 24/85 (28%)
Query: 341 QVTSGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPM 400
+ T+ A Y A I WK E ++I AE K W+ P ++
Sbjct: 438 ETTALGAAYAAGIAVGFWK-------------GEQDVIDNWAEDKRWS-PSME------- 476
Query: 401 FTASGLRVRFLKVWEKSGYNTVEWV 425
SG R R + W+K+ T+EWV
Sbjct: 477 ---SGERERLYRNWKKAVTKTMEWV 498
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,075,979
Number of Sequences: 62578
Number of extensions: 470908
Number of successful extensions: 1041
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 976
Number of HSP's gapped (non-prelim): 14
length of query: 438
length of database: 14,973,337
effective HSP length: 102
effective length of query: 336
effective length of database: 8,590,381
effective search space: 2886368016
effective search space used: 2886368016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)