Query 013709
Match_columns 438
No_of_seqs 181 out of 1308
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 15:38:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013709.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013709hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_M AP-2 complex subunit MU 100.0 2E-100 7E-105 783.9 52.0 429 4-438 1-435 (435)
2 1w63_M Adaptor-related protein 100.0 3E-101 1E-105 787.2 43.4 421 3-438 1-422 (423)
3 1i31_A Clathrin coat assembly 100.0 9.7E-75 3.3E-79 567.7 33.4 308 126-438 1-314 (314)
4 4en2_M AP-1 complex subunit MU 100.0 1.9E-72 6.5E-77 537.9 29.5 265 167-438 1-265 (266)
5 3ml6_A Chimeric complex betwee 100.0 8E-70 2.7E-74 544.3 34.1 272 165-438 105-385 (385)
6 3l81_A AP-4 complex subunit MU 100.0 1.3E-68 4.3E-73 519.4 30.9 265 165-438 22-301 (301)
7 1w63_Q Adapter-related protein 100.0 4.7E-32 1.6E-36 239.2 16.3 137 4-142 1-140 (158)
8 2vgl_S AP-2 complex subunit si 100.0 2.3E-31 7.8E-36 231.0 15.3 135 4-140 1-139 (142)
9 3tjz_C Coatomer subunit zeta-1 100.0 1.3E-29 4.4E-34 221.5 16.8 134 3-141 11-150 (153)
10 3g9h_A Suppressor of yeast pro 99.0 8E-07 2.7E-11 85.2 28.0 225 177-435 67-325 (328)
11 3bw6_A Synaptobrevin homolog Y 94.7 0.36 1.2E-05 40.7 11.4 98 1-98 3-111 (144)
12 4b93_A Vesicle-associated memb 93.7 0.53 1.8E-05 41.6 10.9 91 3-98 2-93 (189)
13 2j3t_C Trafficking protein par 93.4 0.25 8.4E-06 41.9 7.7 91 3-96 1-109 (145)
14 3cue_A Transport protein parti 93.3 1.3 4.3E-05 39.9 12.5 26 3-28 1-26 (219)
15 3cpt_A Mitogen-activated prote 92.5 1.3 4.3E-05 37.1 10.5 91 5-95 38-136 (143)
16 4afi_A AP-3 complex subunit de 91.8 2.5 8.6E-05 36.7 12.2 91 3-98 54-145 (173)
17 2nut_C Vesicle-trafficking pro 91.6 2.6 8.7E-05 37.3 12.5 49 50-98 54-102 (196)
18 3cue_C Transport protein parti 90.7 0.39 1.3E-05 41.3 5.9 90 3-96 1-115 (159)
19 2j3w_A Sedlin, trafficking pro 89.7 3.3 0.00011 34.6 10.8 92 3-98 3-114 (142)
20 2vx8_A Nucleoporin-like protei 88.3 1.7 5.8E-05 37.6 8.2 82 14-98 53-135 (169)
21 3kyq_A YKT6, synaptobrevin hom 88.0 3.9 0.00013 36.3 10.6 96 3-98 2-108 (199)
22 2fh5_A Signal recognition part 85.7 5.9 0.0002 34.6 10.1 95 3-98 9-105 (185)
23 1nrj_A Signal recognition part 85.3 5.6 0.00019 33.0 9.1 71 4-74 1-93 (158)
24 2j3t_D Trafficking protein par 29.0 40 0.0014 30.2 3.5 22 3-24 1-22 (219)
25 2wl8_A Peroxisomal biogenesis 27.0 1.2E+02 0.0042 24.5 5.8 44 81-126 64-108 (126)
No 1
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=100.00 E-value=1.9e-100 Score=783.86 Aligned_cols=429 Identities=48% Similarity=0.920 Sum_probs=372.0
Q ss_pred eeEEEEEEeCCCCEEEEEcccCCCCCchHHHHHHhhcccccCCCCCeEEECCEEEEEEEeCcEEEEEEEcCCccHHHHHH
Q 013709 4 AASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVACAFK 83 (438)
Q Consensus 4 mI~~i~Il~~~G~~l~~r~y~~~~~~~~~~~f~~~v~~~~~~~~~pi~~~~~~~~~~~~~~~l~~v~~~~~~~n~~~~~~ 83 (438)
||+++||+|++|+++++|+|+++.+++.++.|.+++....+...+|++++++++|+|+++++|||+++++.++|++++++
T Consensus 1 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le 80 (435)
T 2vgl_M 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFE 80 (435)
T ss_dssp CCCEEEEECTTCCEEEEEECSSSCCHHHHHHHHHHTTTCSSCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHHHH
T ss_pred CeEEEEEECCCCCEEEEEecCCCCChhHHHHHHHHHhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHHHH
Confidence 89999999999999999999998888889999998886543468899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCcCCHHHHHhhHHHHHHHHHHHHcCCeecccCHHHHhhhhhccCccCCCCCCCCCCCCCCCccccc
Q 013709 84 FVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVT 163 (438)
Q Consensus 84 ~L~~~~~vl~~y~~~~l~e~~i~~n~~~i~~lldE~id~G~p~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (438)
|||+|+++|++|||. ++|++|++||+.||++||||+|+|+|++||+++|++++.++++++++... +.. ...+++++
T Consensus 81 ~L~~~v~vl~~yf~~-v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~--~~~-~~~~~~~~ 156 (435)
T 2vgl_M 81 FLYKMCDVMAAYFGK-ISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTK--EEQ-SQITSQVT 156 (435)
T ss_dssp HHHHHHHHHHHHHSS-CCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCCCC------------------
T ss_pred HHHHHHHHHHHHHhc-cCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhcccccccccccc--ccc-cccccccc
Confidence 999999999999998 99999999999999999999999999999999999999999986543211 111 23445667
Q ss_pred ceeecccCCCccccceEEEEEEEeEEEEEecccceEEEEEEEEEEEEEeecCCCeeEEEecCccccccccccc--CCCCC
Q 013709 164 GAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLK--SRPTK 241 (438)
Q Consensus 164 ~~~~WR~~~~~~~~nei~vdV~E~l~~~~~~~G~i~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~~--~~~~~ 241 (438)
+++|||+.|++|++|||||||+|+++++++++|.+++++|.|+|.|+|+|+|||+|+|+||++..++.....+ .++..
T Consensus 157 ~~i~wr~~gi~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~~ 236 (435)
T 2vgl_M 157 GQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKS 236 (435)
T ss_dssp --CCSSCSCCCCSSCEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEECSSCCEEEEEECSSSCC--------------
T ss_pred cccccccccCCcCcceEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeEEEEeCchhhccccccccccccccc
Confidence 8899999999999999999999999999999999999999999999999999999999999987765432100 00000
Q ss_pred CCceEeeccceeeeeccccCccCcceEEEeCCCCeEEEEEEEecCCCCCCeEEEEEEEEcCceEEEEEEEEeecCCCcee
Q 013709 242 SGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVNVKIKSVFGAKMF 321 (438)
Q Consensus 242 ~~~~~~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Yr~~~~~~~P~~v~~~~~~~~~~~~e~~l~l~~~~~~~~~ 321 (438)
...++.|+||+||||||+++|+++|+|+|+||||+|+||+||++.+..+||.++|++++.|++++|++++++++++++..
T Consensus 237 ~~~~~~l~d~~fH~cV~~~~f~~~r~isF~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~ve~~l~~~~~~~~~~~ 316 (435)
T 2vgl_M 237 GKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLL 316 (435)
T ss_dssp ---CCCCCEEEECTTEEEC-----CCEEECCCSEEEEEEEEEECSSCCCSEEEEEEEECCTTTEEEEEEEEEECSCTTSE
T ss_pred ccCceEccccccceeecHhHhccCceEEEECCCCcEEEEEEEecCCcCCCeEEEEEEEecCCCEEEEEEEEeCCCCCCce
Confidence 12467899999999999999999999999999999999999999888899999999997777799999999999998888
Q ss_pred eeeEEEEeeCCCCCceeEEEEceeEEEEeccCcEEEEEeeecCCCCeeEEEEEEEeeccccccCCCCCCCeEEEEEeCcc
Q 013709 322 ALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMF 401 (438)
Q Consensus 322 ~~~v~i~ip~P~~~~~~~~~~~~G~~~~~~~~~~i~W~I~k~~g~~~~~l~~~~~~~~~~~~~~~~~~~pi~v~F~i~~~ 401 (438)
+++|.|+||+|+++..++++++.|+++|++++++++|+|++++|+++++|+|++++.+. .....+.++||+|+|++| +
T Consensus 317 ~~~V~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~~~~~~~~~~l~~~~~l~~~-~~~~~~~~~pi~v~F~i~-~ 394 (435)
T 2vgl_M 317 AQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPT-NDKKKWARPPISMNFEVP-F 394 (435)
T ss_dssp EEEEEEEEECCSSCCCEEEEESSSEEEEETTTTEEEEEEEEEETTCEEEEEEEEECCCC-SCSCCCCCCCEEEEEEES-S
T ss_pred eeEEEEEEECCCCCCCceEEecceeEEEccCCCEEEEEeccCCCCCCEEEEEEEEecCC-CcCcccCCCcEEEEEEEE-e
Confidence 99999999999999999999999999999999999999999999999999999999764 224567799999999999 9
Q ss_pred cccccEEEEEEEeec----CCCcccccEEEEEecCcEEEeC
Q 013709 402 TASGLRVRFLKVWEK----SGYNTVEWVRYITKAGSYEIRC 438 (438)
Q Consensus 402 t~SGl~V~~l~v~~~----~~~~~~k~vrY~t~sg~Y~~R~ 438 (438)
++||++|++|+|.++ ++|+|+|||||+|+||+|++|+
T Consensus 395 t~Sgl~V~~l~v~~~~~~~~~y~~~kwVrY~t~sg~y~~R~ 435 (435)
T 2vgl_M 395 APSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 435 (435)
T ss_dssp CTTCCCEEEEEEECSSSSCBGGGSEEEEEEEEEEEEEEECC
T ss_pred cccccEEEEEEEeccccccCCCCCcCceEEEEeCCeEEEcC
Confidence 999999999999986 4899999999999999999996
No 2
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=2.9e-101 Score=787.23 Aligned_cols=421 Identities=45% Similarity=0.818 Sum_probs=368.9
Q ss_pred ceeEEEEEEeCCCCEEEEEcccCCCCCchHHHHHHhhccccc-CCCCCeEEECCEEEEEEEeCcEEEEEEEcCCccHHHH
Q 013709 3 VAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKE-LGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVACA 81 (438)
Q Consensus 3 ~mI~~i~Il~~~G~~l~~r~y~~~~~~~~~~~f~~~v~~~~~-~~~~pi~~~~~~~~~~~~~~~l~~v~~~~~~~n~~~~ 81 (438)
|||+|+||+|++|+++++|+|+++.+++.++.|.+++....+ +..+|++++++++|+|+++++|||+++++.|+|++++
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~ 80 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLV 80 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHHH
T ss_pred CceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 899999999999999999999998888889999999886533 4689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCcCCHHHHHhhHHHHHHHHHHHHcCCeecccCHHHHhhhhhccCccCCCCCCCCCCCCCCCccc
Q 013709 82 FKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQ 161 (438)
Q Consensus 82 ~~~L~~~~~vl~~y~~~~l~e~~i~~n~~~i~~lldE~id~G~p~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 161 (438)
++|||+|+++|++|||. ++|++|++||+.||++||||+|+|+|++||+++|+++|.+++++. +......+++
T Consensus 81 le~L~~~v~~l~~yf~~-v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~-------~~~~~~~~~~ 152 (423)
T 1w63_M 81 FSFLYKVVQVFSEYFKE-LEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEGHKL-------ETGAPRPPAT 152 (423)
T ss_dssp HHHHHHHHHHHHHHSSC-CSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSCCCCC-------CCC-------
T ss_pred HHHHHHHHHHHHHHHhh-cCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCCCccc-------cccccCCccc
Confidence 99999999999999998 999999999999999999999999999999999999999998752 1100123345
Q ss_pred ccceeecccCCCccccceEEEEEEEeEEEEEecccceEEEEEEEEEEEEEeecCCCeeEEEecCcccccccccccCCCCC
Q 013709 162 VTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPTK 241 (438)
Q Consensus 162 ~~~~~~WR~~~~~~~~nei~vdV~E~l~~~~~~~G~i~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~ 241 (438)
.++++|||+.|++|++|||||||+|+++++++++|.+++++|.|+|.|+|+|+|||+|+|+||++..++... ..
T Consensus 153 ~~~~i~wr~~g~~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Ln~~~~~~~~~------~~ 226 (423)
T 1w63_M 153 VTNAVSWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTG------RG 226 (423)
T ss_dssp ----CCSSCSSCCCSSCEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEECSSCCEEEEEECSCC--------------
T ss_pred ccCCCCccccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEeCCCCeEEEEECCcccccccc------cc
Confidence 678899999999999999999999999999999999999999999999999999999999999987665421 12
Q ss_pred CCceEeeccceeeeeccccCccCcceEEEeCCCCeEEEEEEEecCCCCCCeEEEEEEEEcCceEEEEEEEEeecCCCcee
Q 013709 242 SGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVNVKIKSVFGAKMF 321 (438)
Q Consensus 242 ~~~~~~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Yr~~~~~~~P~~v~~~~~~~~~~~~e~~l~l~~~~~~~~~ 321 (438)
..+++.++||+||||||+++|+++|+|+|+||||+|+||+||++.+..+||++.||++..+++++|++++++++++++..
T Consensus 227 ~~~~v~l~d~~fHpcV~~~~f~~~r~isf~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~ve~~l~~~~~~~~~~~ 306 (423)
T 1w63_M 227 KSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRST 306 (423)
T ss_dssp -----CEEEEEECTTEEESSSSSCCEEEECCCSEEEEEEEEEEECCCCCTTCCEEEEEEETTTEEEEEEEEECCSCTTSE
T ss_pred ccCceEcccccccccccHHHhCCCCeEEEECCCCcEEEEEEEecCCcCCCEEEEEEEEecCCCEEEEEEEEcccCCCcce
Confidence 34567899999999999999999999999999999999999998888899999999997777899999999999998888
Q ss_pred eeeEEEEeeCCCCCceeEEEEceeEEEEeccCcEEEEEeeecCCCCeeEEEEEEEeeccccccCCCCCCCeEEEEEeCcc
Q 013709 322 ALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMF 401 (438)
Q Consensus 322 ~~~v~i~ip~P~~~~~~~~~~~~G~~~~~~~~~~i~W~I~k~~g~~~~~l~~~~~~~~~~~~~~~~~~~pi~v~F~i~~~ 401 (438)
++||.|+||+|+++..++++++.|+++|++++++++|+|++++|+++++|+|++++.+... ...+.++||+|+|++|++
T Consensus 307 ~~~V~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~~i~~~~~~~l~~~~~l~~~~~-~~~~~~~pi~v~F~i~~~ 385 (423)
T 1w63_M 307 ANNVEIHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSVEA-EDKEGKPPISVKFEIPYF 385 (423)
T ss_dssp EESCEEEEECCTTCCCCEEEESSSEEEEETGGGEEEEECSEEETTCEEEEEEEEEC-----------CCCEEEEBCCSSC
T ss_pred eeEEEEEEeCCCCcccceEEecCccEEEecCCCEEEEEeCcCCCCCcEEEEEEEEccCCCc-ccccCCCcEEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999999999999976521 355779999999999999
Q ss_pred cccccEEEEEEEeecCCCcccccEEEEEecCcEEEeC
Q 013709 402 TASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYEIRC 438 (438)
Q Consensus 402 t~SGl~V~~l~v~~~~~~~~~k~vrY~t~sg~Y~~R~ 438 (438)
++||++|++|+|.++.+|+|+|||||+|+||+|++|+
T Consensus 386 t~Sgl~V~~l~v~~~~~y~~~kwVrY~t~sg~y~~R~ 422 (423)
T 1w63_M 386 TTSGIQVRYLKIIEKSGYQAIPWVRYITQNGDYQLRT 422 (423)
T ss_dssp CTTCCCEEEEEEECSSCCCCEEEEEEEEEBSCEEECC
T ss_pred eCCCCEEEEEEeEccCCCCCcCceEEEEeCCcEEEec
Confidence 9999999999999866899999999999999999996
No 3
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A
Probab=100.00 E-value=9.7e-75 Score=567.70 Aligned_cols=308 Identities=50% Similarity=0.938 Sum_probs=239.1
Q ss_pred cccCHHHHhhhhhccCccCCCCCCCCCCCCCCCcccccceeecccCCCccccceEEEEEEEeEEEEEecccceEEEEEEE
Q 013709 126 QNLSPEILKLYITQEGVRSPFSSKPTDRPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTG 205 (438)
Q Consensus 126 ~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~~nei~vdV~E~l~~~~~~~G~i~~~~v~G 205 (438)
|+||+++|+++|..+++..+... .+. ...++++.++++|||+.|++|++|||||||+|+|+++++++|.+++++|.|
T Consensus 1 q~te~~~Lk~~i~~~~~~~~~~~--~~~-~~~~~~~~~~~v~WR~~gi~y~~NEi~vdV~E~v~~~i~~~G~v~~~eV~G 77 (314)
T 1i31_A 1 QNSETGALKTFITQQGIKSQHQT--KEE-QSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSG 77 (314)
T ss_dssp ----------------------------------------CTTSCSCCCCSSCEEEEEEEEEEEEEECSSCCEEEEEEEE
T ss_pred CcCChHHHHHhhcCCCeeccccc--ccc-ccCCCccccCCCCCCccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEE
Confidence 68999999999999987543211 111 134556788999999999999999999999999999999999999999999
Q ss_pred EEEEEEeecCCCeeEEEecCccccccccccc--CCCCCCCceEeeccceeeeeccccCccCcceEEEeCCCCeEEEEEEE
Q 013709 206 KILMKCFLSGMPDLKLGLNDKIGLEKESQLK--SRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYR 283 (438)
Q Consensus 206 ~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~~--~~~~~~~~~~~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Yr 283 (438)
+|.|+|+|+|||+|+|+||++..++...... ..+....+++.|+||+|||||++++|+++|+|+|+||||+|+||+||
T Consensus 78 ~I~~~~~LsG~P~l~l~Ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~FHpcV~l~~f~~~r~IsFiPPDG~F~Lm~Yr 157 (314)
T 1i31_A 78 RVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYR 157 (314)
T ss_dssp EEEEEEECSSSCEEEEEESCCC-----------------CCCCCCSEEEECTTSBCC----CCCEEECCCSEEEEEEEEE
T ss_pred EEEEEEEcCCCCeEEEEECCchhccccccccccccccccCCceEcccccccccccHHHcCCcceEEEECCCCCeEEEEEE
Confidence 9999999999999999999987766432100 00001134678999999999999999999999999999999999999
Q ss_pred ecCCCCCCeEEEEEEEEcCceEEEEEEEEeecCCCceeeeeEEEEeeCCCCCceeEEEEceeEEEEeccCcEEEEEeeec
Q 013709 284 ITEGVNLPFRVLPTIKELGRTRMEVNVKIKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKF 363 (438)
Q Consensus 284 ~~~~~~~P~~v~~~~~~~~~~~~e~~l~l~~~~~~~~~~~~v~i~ip~P~~~~~~~~~~~~G~~~~~~~~~~i~W~I~k~ 363 (438)
++.+..+||.+.|++++.|++++||+++++++|+....++||.|+||+|+++..++++++.|+++|++++++++|+|+++
T Consensus 158 ~~~~~~lP~~v~~~~~~~g~~~iE~~l~~~~~~~~~~~~~nV~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~l~W~I~~i 237 (314)
T 1i31_A 158 TTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRM 237 (314)
T ss_dssp ECSSCCCCEEEEEEEEEETTTEEEEEEEEEECSCTTCEEEEEEEEEECCTTEEEEEEECSSSEEEEEGGGTEEEEEEEEE
T ss_pred ecCCcCCCEEEEEEEEecCCcEEEEEEEEccCCCCcceeeEEEEEEECCCCcccceEEecCceEEEecCCCEEEEEeCcC
Confidence 99888899999999998777799999999999999889999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEEEEEEeeccccccCCCCCCCeEEEEEeCcccccccEEEEEEEeec----CCCcccccEEEEEecCcEEEeC
Q 013709 364 PGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGLRVRFLKVWEK----SGYNTVEWVRYITKAGSYEIRC 438 (438)
Q Consensus 364 ~g~~~~~l~~~~~~~~~~~~~~~~~~~pi~v~F~i~~~t~SGl~V~~l~v~~~----~~~~~~k~vrY~t~sg~Y~~R~ 438 (438)
+|+++++|+|+++|.+. .....+.++||+|+|++| +++|||+|++|+|.++ ++|+|+|||||+|+||+|++|+
T Consensus 238 ~g~~e~~l~~~~~l~s~-~~~~~~~~~pi~v~F~ip-~t~Sgl~V~~l~v~e~~~~~~~y~~~kwVrYit~sg~y~~R~ 314 (314)
T 1i31_A 238 AGMKESQISAEIELLPT-NDKKKWARPPISMNFEVP-FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 314 (314)
T ss_dssp ESSEEEEEEEEEEECCC-CSSSCCCCCCEEEEEEES-SCTTCCCEEEEEEECSSSSCCGGGCEEEEEEEEEEEEEEECC
T ss_pred CCCCcEEEEEEEEecCC-CcCCccCCCcEEEEEEEe-ecccCcEEEEEEEeccccccCCCCccCceEEEEeCCeEEEcC
Confidence 99999999999999764 224567799999999999 9999999999999986 4899999999999999999996
No 4
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Probab=100.00 E-value=1.9e-72 Score=537.92 Aligned_cols=265 Identities=46% Similarity=0.857 Sum_probs=241.0
Q ss_pred ecccCCCccccceEEEEEEEeEEEEEecccceEEEEEEEEEEEEEeecCCCeeEEEecCcccccccccccCCCCCCCceE
Q 013709 167 GWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPTKSGKTI 246 (438)
Q Consensus 167 ~WR~~~~~~~~nei~vdV~E~l~~~~~~~G~i~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~~~~~ 246 (438)
|||+.|++|++|||||||+|+|+++++++|.+++++|.|+|.|+|+|+|||+|+|+||++.+++... ....+++
T Consensus 1 ~WR~~~i~y~~nei~vdV~E~v~~~~~~~G~v~~~~v~G~i~~~~~lsG~p~~~l~ln~~~~~~~~~------~~~~~~~ 74 (266)
T 4en2_M 1 SWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTG------RGKSKSV 74 (266)
T ss_dssp CCCCTTCCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECCSCCEEEEEECBHHHHHHTT------CTTSCCB
T ss_pred CCcCCCCccccCeEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEECCCCCEEEEEEcCcccccccc------ccccCcc
Confidence 6999999999999999999999999999999999999999999999999999999999987655431 1224567
Q ss_pred eeccceeeeeccccCccCcceEEEeCCCCeEEEEEEEecCCCCCCeEEEEEEEEcCceEEEEEEEEeecCCCceeeeeEE
Q 013709 247 ELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVNVKIKSVFGAKMFALGVV 326 (438)
Q Consensus 247 ~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Yr~~~~~~~P~~v~~~~~~~~~~~~e~~l~l~~~~~~~~~~~~v~ 326 (438)
.++||+|||||++++|+++|+|+|+||||+|+||+||++.+..+||.+.|++++.+.++++++++++++|+.+..++||.
T Consensus 75 ~l~d~~fH~cV~~~~f~~~r~i~f~PPdg~F~Lm~yr~~~~~~~Pi~i~~~~~~~~~~~vei~v~~k~~~~~~~~~~nV~ 154 (266)
T 4en2_M 75 ELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNVE 154 (266)
T ss_dssp CCEEEEECTTBCHHHHHHHCCCEECCCSEEEEEEEEEECCCCCCSEEEEEEEEEEETTEEEEEEEEEECBCTTCEEEEEE
T ss_pred CccccccccccCHhHccccceEEEeCCCCceEEEEEEecCCCCCCEEEEEEEecCCCEEEEEEEEEecCCCCCcEEEEEE
Confidence 89999999999999999999999999999999999999988889999999999877789999999999999989999999
Q ss_pred EEeeCCCCCceeEEEEceeEEEEeccCcEEEEEeeecCCCCeeEEEEEEEeeccccccCCCCCCCeEEEEEeCccccccc
Q 013709 327 IKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVPMFTASGL 406 (438)
Q Consensus 327 i~ip~P~~~~~~~~~~~~G~~~~~~~~~~i~W~I~k~~g~~~~~l~~~~~~~~~~~~~~~~~~~pi~v~F~i~~~t~SGl 406 (438)
|+||+|.++..++++++.|+++|++++++++|+|++++|+++++|+|++++++. .....+.++||+|+|+||++++|||
T Consensus 155 I~IP~P~~~~~~~~~~~~G~~~y~~~~~~lvW~I~~~~g~~e~~l~~~~~l~s~-~~~~~~~~~pI~v~F~ip~~t~SGl 233 (266)
T 4en2_M 155 IHIPVPNDADSPKFKTTVGSVKWVPENSEIVWSVKSFPGGKEYLMRAHFGLPSV-EAEDKEGKPPISVKFEIPYFTTSGI 233 (266)
T ss_dssp EEEECCTTCEEEEEEESSSEEEEETTTTEEEEEEEEEESSCEEEEEEEEEC-----------CCCEEEEEEEESEESSCC
T ss_pred EEECCCCCcCcceEEecCceEEEeccCCEEEEEEeeECCCcceEEEEEEEeCCC-CCCCcccCCcEEEEEEeCCceeCCc
Confidence 999999999999999999999999999999999999999999999999999764 2234577999999999999999999
Q ss_pred EEEEEEEeecCCCcccccEEEEEecCcEEEeC
Q 013709 407 RVRFLKVWEKSGYNTVEWVRYITKAGSYEIRC 438 (438)
Q Consensus 407 ~V~~l~v~~~~~~~~~k~vrY~t~sg~Y~~R~ 438 (438)
+|++|+|.++.+|+|+|||||+|+||+|++|+
T Consensus 234 ~V~~L~v~e~~~y~~~kwVrY~T~sg~y~~R~ 265 (266)
T 4en2_M 234 QVRYLKIIEKSGYQALPWVRYITQNGDYQLRT 265 (266)
T ss_dssp CEEEEEEECSSCCCEEEEEEEEEECSSEEECC
T ss_pred EEEEEEeeccCCCCCCCCEEEEEeCCCEEEec
Confidence 99999999877999999999999999999996
No 5
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=100.00 E-value=8e-70 Score=544.25 Aligned_cols=272 Identities=49% Similarity=0.917 Sum_probs=239.9
Q ss_pred eeec---ccCCCccccceEEEEEEEeEEEEEecccceEEEEEEEEEEEEEeecCCCeeEEEecCcccccccccc--cCCC
Q 013709 165 AVGW---RREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQL--KSRP 239 (438)
Q Consensus 165 ~~~W---R~~~~~~~~nei~vdV~E~l~~~~~~~G~i~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~--~~~~ 239 (438)
.+|| |+.|++|++|||||||+|+|+++++++|.+++++|.|+|.|+|+|+|||+|+|+||++..++..... ...+
T Consensus 105 ~~~~~~~~~~gi~y~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~k~~LsG~P~~~l~LNd~~~~~~~~~~~~~~~~ 184 (385)
T 3ml6_A 105 PPPYHELEFGGSGGSRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETS 184 (385)
T ss_dssp CCCCEEBCSSSBCCCCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECSSCCEEEEEECC----------------
T ss_pred CCCchhccccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEcCcccccccccccccccc
Confidence 3499 7899999999999999999999999999999999999999999999999999999998776654211 0011
Q ss_pred CCCCceEeeccceeeeeccccCccCcceEEEeCCCCeEEEEEEEecCCCCCCeEEEEEEEEcCceEEEEEEEEeecCCCc
Q 013709 240 TKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEVNVKIKSVFGAK 319 (438)
Q Consensus 240 ~~~~~~~~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Yr~~~~~~~P~~v~~~~~~~~~~~~e~~l~l~~~~~~~ 319 (438)
.....++.|+||+|||||++++|+++|+|+|+||||+|+||+||++.+..+||+++|++++.|.++++++++++++|+.+
T Consensus 185 ~~~~~~i~l~d~~FH~CV~l~~f~~~r~IsFiPPDg~F~Lm~Yr~~~~~~~Pf~i~~~v~~~~~~~vei~v~lk~~f~~~ 264 (385)
T 3ml6_A 185 KSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPS 264 (385)
T ss_dssp ------CCCCEEEECTTBCCCCSSSCSEEEECCCSEEEEEEEEEECSSCCCSEEEEEEEEEETTTEEEEEEEEEECSCTT
T ss_pred ccccCceEccccccccccChhHccccceEEEeCCCCceEEEEEEcCCCCCCCEEEEEEEEeCCCeEEEEEEEEeecCCCc
Confidence 12234688999999999999999999999999999999999999988888999999999988788999999999999999
Q ss_pred eeeeeEEEEeeCCCCCceeEEEEceeEEEEeccCcEEEEEeeecCCCCeeEEEEEEEeeccccccCCCCCCCeEEEEEeC
Q 013709 320 MFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEKKSWTRPPIQMEFQVP 399 (438)
Q Consensus 320 ~~~~~v~i~ip~P~~~~~~~~~~~~G~~~~~~~~~~i~W~I~k~~g~~~~~l~~~~~~~~~~~~~~~~~~~pi~v~F~i~ 399 (438)
..+++|.|+||+|+++.++++.++.|+++|++++++++|+|++++|+++++|+|+|++.+. .....+.++||+|+|+||
T Consensus 265 ~~~~nV~I~IP~P~~~~~~~~~~~~G~~~y~~~~~~lvW~I~k~~g~~e~~l~~~~~l~~~-~~~~~~~~~PI~v~F~Ip 343 (385)
T 3ml6_A 265 LLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPT-NDKKKWARPPISMNFEVP 343 (385)
T ss_dssp CCEEEEEEEEECCTTEEEEEEEESSSEEEEEGGGTEEEEEEEEECSSEEEEEEEEEEECCC-SSCCSCCCCCEEEEEEES
T ss_pred ceEEEEEEEecCCCCcccceEEecCceEEEeccCcEEEEEeeeECCCcceEEEEEEEECCC-CCCccccCCCEEEEEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999764 234567899999999999
Q ss_pred cccccccEEEEEEEeec----CCCcccccEEEEEecCcEEEeC
Q 013709 400 MFTASGLRVRFLKVWEK----SGYNTVEWVRYITKAGSYEIRC 438 (438)
Q Consensus 400 ~~t~SGl~V~~l~v~~~----~~~~~~k~vrY~t~sg~Y~~R~ 438 (438)
+++|||+|++|+|.++ ++|+|+|||||+|+||+|++|+
T Consensus 344 -~t~SGl~Vr~L~v~e~~~~~~~y~~~kwVRYiT~sg~Y~~R~ 385 (385)
T 3ml6_A 344 -FAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 385 (385)
T ss_dssp -SCTTCCCEEEEEEECSSSCCCGGGCEEEEEECEEEEEEEECC
T ss_pred -ccccCCEEEEEEEecccCcccCCCccccEEEEEECCCEEecC
Confidence 9999999999999887 5789999999999999999996
No 6
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens}
Probab=100.00 E-value=1.3e-68 Score=519.38 Aligned_cols=265 Identities=30% Similarity=0.583 Sum_probs=224.6
Q ss_pred eeecccCCCccccceEEEEEEEeEEEEEecccceEEEEEEEEEEEEEeecCCCeeEEEecCcccccccccccCCCCCCCc
Q 013709 165 AVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKSRPTKSGK 244 (438)
Q Consensus 165 ~~~WR~~~~~~~~nei~vdV~E~l~~~~~~~G~i~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~~~ 244 (438)
.++||+. +|++|||||||+|+|+++++++|.+++++|.|+|.|+|+|+|||+|+|+||++..+++... .....
T Consensus 22 v~~wr~~--~~~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Lnd~~~~~~~~~-----~~~~~ 94 (301)
T 3l81_A 22 VLSSRSD--QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFSVGKSEL-----RGYGP 94 (301)
T ss_dssp -------------CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCTTCEEEEEECSSCEESCCTT-----TCCCS
T ss_pred ccccccc--cCCcceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEccccccccccc-----ccccC
Confidence 3599986 8999999999999999999999999999999999999999999999999999987765421 12345
Q ss_pred eEeeccceeeeeccccCccCcceEEEeCCCCeEEEEEEEecCCC--CCCeEEEEEEEEcCc-eEEEEEEEEeecCCCcee
Q 013709 245 TIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGV--NLPFRVLPTIKELGR-TRMEVNVKIKSVFGAKMF 321 (438)
Q Consensus 245 ~~~l~d~~fH~cV~~~~f~~~~~i~F~PPdG~F~Lm~Yr~~~~~--~~P~~v~~~~~~~~~-~~~e~~l~l~~~~~~~~~ 321 (438)
++.|+||+|||||++++|+++|+|+|+||||+|+||+||++.+. .+||.++|+++..+. +++|++++++++|+.+..
T Consensus 95 ~~~l~d~~fH~cV~~~~f~~~r~IsFiPPDg~F~Lm~Yr~~~~~~~~~P~~v~~~v~~~~~~~~ie~~l~l~~~f~~~~~ 174 (301)
T 3l81_A 95 GIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPFRLFPSVQWDRGSGRLQVYLKLRCDLLSKSQ 174 (301)
T ss_dssp SSEESEEEEETTCBCTTHHHHCEEEECCCSEEEEEEEEEECSCCSSCCSEEEEEEEEECTTTSEEEEEEEEEECSCTTCE
T ss_pred ceEccccccccccChhHccccceEEecCCCCeeEEEEEEecCCCccCCCEEEEEEEEECCCcEEEEEEEEEecCCCCCcE
Confidence 68899999999999999999999999999999999999998654 699999999998654 799999999999999999
Q ss_pred eeeEEEEeeCCCCCceeE--EEEceeEEEEeccCcEEEEEeeecCCCCeeEEEEEEEeecccccc--------CCCCCCC
Q 013709 322 ALGVVIKIPVPKQTAKTS--FQVTSGRAKYNASIDCLVWKIRKFPGQTEPTMSAEVELISTMAEK--------KSWTRPP 391 (438)
Q Consensus 322 ~~~v~i~ip~P~~~~~~~--~~~~~G~~~~~~~~~~i~W~I~k~~g~~~~~l~~~~~~~~~~~~~--------~~~~~~p 391 (438)
++||.|+||+|+++..++ +.++.|+++| ++++++|+|++++|+++++++++|++++....+ ..|.++|
T Consensus 175 ~~nV~I~IPvP~~~~~~~~~~~~~~G~~~y--~~~~lvW~I~~~~g~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~P 252 (301)
T 3l81_A 175 ALNVRLHLPLPRGVVSLSQELSSPEQKAEL--AEGALRWDLPRVQGGSQLSGLFQMDVPGPPGPPSHGLSTSASPLGLGP 252 (301)
T ss_dssp EEEEEEEEECCTTCEEEEEEESSTTCEEEE--ETTEEEEEECCEETTCEEEEEEEEECCCCCC------------CCCCC
T ss_pred EEEEEEEEcCCCCcccceEEEeecCceEEE--eCcEEEEEEeeECCCcEEeEEEEEEecCCccccccccccccccccCCC
Confidence 999999999999998888 5577899999 889999999999999999999999887531111 2577999
Q ss_pred eEEEEEeCcccccccEEEEEEEeecC--CCcccccEEEEEecCcEEEeC
Q 013709 392 IQMEFQVPMFTASGLRVRFLKVWEKS--GYNTVEWVRYITKAGSYEIRC 438 (438)
Q Consensus 392 i~v~F~i~~~t~SGl~V~~l~v~~~~--~~~~~k~vrY~t~sg~Y~~R~ 438 (438)
|+|+|+||++++|||+|++|+|.++. +|+|+|||||+|+||+|++|+
T Consensus 253 I~v~F~ip~~t~SGl~Vr~L~v~e~~~~~y~~~kwVRYiT~sg~Y~~R~ 301 (301)
T 3l81_A 253 ASLSFELPRHTCSGLQVRFLRLAFRPSGNANPHKWVRHLSHSDAYVIRI 301 (301)
T ss_dssp EEEEEEEETCCSSCCCEEEEEEEC-------CEEEEEEEEEEEEEEECC
T ss_pred EEEEEEeCCccccCcEEEEEEEecccccCCCCccceEEEEeCCcEEEcC
Confidence 99999999999999999999999863 689999999999999999996
No 7
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.98 E-value=4.7e-32 Score=239.18 Aligned_cols=137 Identities=20% Similarity=0.311 Sum_probs=127.9
Q ss_pred eeEEEEEEeCCCCEEEEEcccCCCCC---chHHHHHHhhcccccCCCCCeEEECCEEEEEEEeCcEEEEEEEcCCccHHH
Q 013709 4 AASAIYFLNLRGDVLINRLYRDDVGG---NMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVAC 80 (438)
Q Consensus 4 mI~~i~Il~~~G~~l~~r~y~~~~~~---~~~~~f~~~v~~~~~~~~~pi~~~~~~~~~~~~~~~l~~v~~~~~~~n~~~ 80 (438)
||+|+||+|++|+++++|+|+++..+ ...+.|++++..+++ ..+|+++.++++|+|+++++|||+++++.++||++
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~ 79 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKP-KMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNELI 79 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTSCS-SSCSEEEETTEEEEEEEETTEEEEEEECSSSCHHH
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhccCC-CCCCeEEECCEEEEEEEECCEEEEEEecCCCCHHH
Confidence 89999999999999999999988765 577788887766543 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcCCHHHHHhhHHHHHHHHHHHHcCCeecccCHHHHhhhhhccCc
Q 013709 81 AFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGV 142 (438)
Q Consensus 81 ~~~~L~~~~~vl~~y~~~~l~e~~i~~n~~~i~~lldE~id~G~p~~t~~~~l~~~i~~~~~ 142 (438)
+++|||+++++|++|||. ++|++|++||+.||++||||+|+|+||+||++.|+++|.+++.
T Consensus 80 ~le~L~~~vevl~~yf~~-v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~~~ 140 (158)
T 1w63_Q 80 TLELIHRYVELLDKYFGS-VCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADL 140 (158)
T ss_dssp HHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcc-CCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcchh
Confidence 999999999999999998 9999999999999999999999999999999999999998654
No 8
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=99.97 E-value=2.3e-31 Score=231.00 Aligned_cols=135 Identities=18% Similarity=0.273 Sum_probs=123.9
Q ss_pred eeEEEEEEeCCCCEEEEEcccCC---CCCchHHHHHHhhcccccCCCCCeEEECCEEEEEEEeCcEEEEEEEcCCccHHH
Q 013709 4 AASAIYFLNLRGDVLINRLYRDD---VGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVAC 80 (438)
Q Consensus 4 mI~~i~Il~~~G~~l~~r~y~~~---~~~~~~~~f~~~v~~~~~~~~~pi~~~~~~~~~~~~~~~l~~v~~~~~~~n~~~ 80 (438)
||+|++|+|++|+++++|+|++. .+++.++.|++++..+++ ..+|+++.++++|+|+++++|||+++++.++|+++
T Consensus 1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~~~~~-~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~ 79 (142)
T 2vgl_S 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDA-KHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNNLA 79 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHHTCCT-TSCSEEEETTEEEEEEEETTEEEEEEECTTSCHHH
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHhcCCC-CCCCEEEECCEEEEEEEECCEEEEEEeCCCCCHHH
Confidence 89999999999999999999943 335688899999886543 68999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcCCHHHHHhhHHHHHHHHHHHHcCCeecccC-HHHHhhhhhcc
Q 013709 81 AFKFVVEAVALFKSYFGGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLS-PEILKLYITQE 140 (438)
Q Consensus 81 ~~~~L~~~~~vl~~y~~~~l~e~~i~~n~~~i~~lldE~id~G~p~~t~-~~~l~~~i~~~ 140 (438)
++++||+++++|++|||. ++|++|++||+.||++||||+|+|+|++|+ .+.|+.++.++
T Consensus 80 ~le~L~~~ve~l~~yf~~-v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~~~~ 139 (142)
T 2vgl_S 80 YLEAIHNFVEVLNEYFHN-VCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQ 139 (142)
T ss_dssp HHHHHHHHHHHHHHHTTS-CCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHhhh
Confidence 999999999999999998 999999999999999999999999999995 67788887754
No 9
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=99.97 E-value=1.3e-29 Score=221.50 Aligned_cols=134 Identities=17% Similarity=0.248 Sum_probs=116.9
Q ss_pred ceeEEEEEEeCCCCEEEEEcccCCCC----CchHH-HHHHhhcccccCCCCCeEEECCEEEEEEEeCcEEEEEEEcCCcc
Q 013709 3 VAASAIYFLNLRGDVLINRLYRDDVG----GNMVD-AFRTHIMQTKELGTCPVRQIGGCSFFYMRISNVYIVIVVSSNAN 77 (438)
Q Consensus 3 ~mI~~i~Il~~~G~~l~~r~y~~~~~----~~~~~-~f~~~v~~~~~~~~~pi~~~~~~~~~~~~~~~l~~v~~~~~~~n 77 (438)
.||+|++|+|++|+++++|+|+++.. +...+ .+++++. + ..+|++.+++++++|+++++|||+++++.++|
T Consensus 11 ~mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~-r---~~~~i~~~~~~~~vy~~~~~Lyfv~~~~~~eN 86 (153)
T 3tjz_C 11 YTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH-R---TDSEIALLEGLTVVYKSSIDLYFYVIGSSYEN 86 (153)
T ss_dssp BCEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHS-S---CCCCEEEETTEEEEEEECSSCEEEEEEETTSC
T ss_pred HHheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C---CCCCEEEECCEEEEEEEECCEEEEEEEcCCCC
Confidence 49999999999999999999998643 23233 4555542 2 34799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhc-CCcCCHHHHHhhHHHHHHHHHHHHcCCeecccCHHHHhhhhhccC
Q 013709 78 VACAFKFVVEAVALFKSYF-GGAFDEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEG 141 (438)
Q Consensus 78 ~~~~~~~L~~~~~vl~~y~-~~~l~e~~i~~n~~~i~~lldE~id~G~p~~t~~~~l~~~i~~~~ 141 (438)
+++++++||+++++|++|| +. ++|+.|++||+.+|++||||+|+|+||+||++.+.+++....
T Consensus 87 el~ile~L~~~ve~l~~yf~~~-v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~~~ 150 (153)
T 3tjz_C 87 ELMLMTVLNCLFDSLSQMLRKN-VEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRG 150 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSC-CCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC----
T ss_pred hHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhccc
Confidence 9999999999999999999 66 999999999999999999999999999999999999988643
No 10
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae}
Probab=98.96 E-value=8e-07 Score=85.23 Aligned_cols=225 Identities=16% Similarity=0.287 Sum_probs=141.7
Q ss_pred cceEEEEEEEeEEEEEecccceEEEEEEEEEEEEEeecC-------CCeeEEEecCcccccccccccCCCCCCCceEeec
Q 013709 177 KNEVFLDIVESVNLLMSSKGSVLRCDVTGKILMKCFLSG-------MPDLKLGLNDKIGLEKESQLKSRPTKSGKTIELD 249 (438)
Q Consensus 177 ~nei~vdV~E~l~~~~~~~G~i~~~~v~G~i~~~s~LsG-------~P~~~l~ln~~~~~~~~~~~~~~~~~~~~~~~l~ 249 (438)
.-++-..|.|.||+.+. +|.+.++.|.|+|.+.- ..| .+.+.+.|++-..+.+- +-
T Consensus 67 ~pGLnASI~E~VNA~Fk-gg~~tk~~v~GEiaLsy-~~~~~s~~p~p~~l~fRL~N~~~Lekv---------------~p 129 (328)
T 3g9h_A 67 QFGLNASIAEVLNASFK-DGMLQNSQLIGEIALNY-LPNSVMNSPLPIGINLRINNGAKFEKV---------------IL 129 (328)
T ss_dssp CCEEEEEEEEEEEEEEE-TTEEEEEEEEEEEEEEE-ECCSSSCCCCCSEEEEEEETGGGEEEE---------------EE
T ss_pred CCceeEEEEEEEEEEEE-CCcEEEEEEEEEEEEec-CCCccccCCCCccEEEEecCcchhhee---------------eC
Confidence 45788899999999998 67899999999987763 444 13477778653222211 01
Q ss_pred cceeeeeccccCccCcceEEEeCC---CCeEEEEEEEecCCCCCCeEEEEEEE-EcCceEEEEEEEEeecCCC---ceee
Q 013709 250 DVTFHQCVNLTRFNSEKTVSFVPP---DGEFELMKYRITEGVNLPFRVLPTIK-ELGRTRMEVNVKIKSVFGA---KMFA 322 (438)
Q Consensus 250 d~~fH~cV~~~~f~~~~~i~F~PP---dG~F~Lm~Yr~~~~~~~P~~v~~~~~-~~~~~~~e~~l~l~~~~~~---~~~~ 322 (438)
+-+|-.++.-+.| .|-++ ...-.+++|+++. ...|+.+.+.-+ +.....+-+.+++...++. ...+
T Consensus 130 N~~fv~~~~~~eF------~vn~~~L~sktv~~lKYqVs~-~~~PL~l~p~WK~E~~qtsliI~Yk~NP~~~~~~~~~~L 202 (328)
T 3g9h_A 130 NQAFIERVAPEEF------KVNPSFIDSRTLGAIKYSIKE-PIAPIVIHPVWRFESHQASVVLTVKMSPSLPDEISQIVI 202 (328)
T ss_dssp CTTTEEEEETTEE------EECTTTTBTCEEEEEEEEEES-CCCSEEEEEEEEECSSEEEEEEEEEECTTSCTTCCEEEE
T ss_pred CHHHhccCCCCCE------EEchHHhcccceeeEEEEECC-CCCCeEEEeeeecCCCeeEEEEEEEECCCCcCcCCCcee
Confidence 1111122211111 11111 1225689999975 678999986555 3344556666666666665 6789
Q ss_pred eeEEEEeeCCC-CCceeEEEEceeEEEEeccCcEEEEEeee-c--CCCCe-eEEEEEEEeeccccccCCCCCCCeEEEEE
Q 013709 323 LGVVIKIPVPK-QTAKTSFQVTSGRAKYNASIDCLVWKIRK-F--PGQTE-PTMSAEVELISTMAEKKSWTRPPIQMEFQ 397 (438)
Q Consensus 323 ~~v~i~ip~P~-~~~~~~~~~~~G~~~~~~~~~~i~W~I~k-~--~g~~~-~~l~~~~~~~~~~~~~~~~~~~pi~v~F~ 397 (438)
+||.|.+|+.. .++++...+ . +.|..+++.+.|+|+. + ..+.+ ..|.|+|..... ..+. ...+.++|+
T Consensus 203 ~Nv~~~V~ldGa~ats~qskP-~--gtwn~e~~ri~Wkl~e~l~l~~~g~~gkLiARf~~~g~---~~~~-~~gV~akF~ 275 (328)
T 3g9h_A 203 EDLVVFVNIDGANATSALSKP-Q--GSFSKEKKRITWRFKEPVVLTRNGEGQRLIARFITDGL---AHES-AKGVITKFT 275 (328)
T ss_dssp EEEEEEEEBCSSCEEEEEESS-S--CCBCSSSCEEEEECSSCEEEETTCCCEEEEEEEEESSC---CCBC-SSCEEEEEE
T ss_pred eeEEEEEEeCCCceeEEEecC-C--ceeccccCEEEEECCCCcccccCCCCCeEEEEEEcCCC---CCCC-CCcEEEEEE
Confidence 99999999976 344443322 3 4588999999999987 3 32223 789999988332 1222 223999999
Q ss_pred eCcc---------cccccEEEEEEEeecCCCccc--ccEEEEE----ecCcEE
Q 013709 398 VPMF---------TASGLRVRFLKVWEKSGYNTV--EWVRYIT----KAGSYE 435 (438)
Q Consensus 398 i~~~---------t~SGl~V~~l~v~~~~~~~~~--k~vrY~t----~sg~Y~ 435 (438)
+.+. .-|||.|......+.. || .|.---| .+|.|+
T Consensus 276 ~~~~~~~~~~~~~~gsgi~i~~~~~~~~d---PF~~~W~~v~~~r~l~~G~Y~ 325 (328)
T 3g9h_A 276 ISETDNVALPHSGAGSGITLTCQELDENN---PFGGEWLDVNTKRTLTTGNYH 325 (328)
T ss_dssp ECCCSCSSCTTTTCSCCCEEEEEEESSSC---TTCCCCEECEEEEEEEEEEEE
T ss_pred EeCCCcccccccccCCceeEEecccccCC---CCcCcccccceEEEEeeeEEE
Confidence 9876 4679999888775422 21 3643322 268886
No 11
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=94.66 E-value=0.36 Score=40.73 Aligned_cols=98 Identities=11% Similarity=0.088 Sum_probs=65.9
Q ss_pred CCceeEEEEEEeCCC--CEEEEEcccCC----CCCchHHHH----HHhhcccccCCCCCeEEECCEEEEEE-EeCcEEEE
Q 013709 1 MPVAASAIYFLNLRG--DVLINRLYRDD----VGGNMVDAF----RTHIMQTKELGTCPVRQIGGCSFFYM-RISNVYIV 69 (438)
Q Consensus 1 ~~~mI~~i~Il~~~G--~~l~~r~y~~~----~~~~~~~~f----~~~v~~~~~~~~~pi~~~~~~~~~~~-~~~~l~~v 69 (438)
|+|=|.++.|+-.++ -++++..+.-. ..|+...+| -+.+..+......--++.+++.+-|. ..+++-++
T Consensus 3 ~~Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~~R~sv~~~~y~fH~~~~~~gl~~l 82 (144)
T 3bw6_A 3 MAMRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQSIEEGNYIGHVYARSEGICGV 82 (144)
T ss_dssp CCCCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTTEEEEEEETTEEEEEEECTTSEEEE
T ss_pred cEEEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCCceEEEEeCCEEEEEEEecCCEEEE
Confidence 888899998886543 45566554311 225444444 34444332211223567788888776 77999999
Q ss_pred EEEcCCccHHHHHHHHHHHHHHHHhhcCC
Q 013709 70 IVVSSNANVACAFKFVVEAVALFKSYFGG 98 (438)
Q Consensus 70 ~~~~~~~n~~~~~~~L~~~~~vl~~y~~~ 98 (438)
|+++.+-.--.++.||+.+.+-+..-++.
T Consensus 83 ~i~D~~yp~rvAF~~L~~i~~eF~~~y~~ 111 (144)
T 3bw6_A 83 LITDKEYPVRPAYTLLNKILDEYLVAHPK 111 (144)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHHHHSCG
T ss_pred EEECCCCChhHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999888877665554
No 12
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=93.68 E-value=0.53 Score=41.63 Aligned_cols=91 Identities=18% Similarity=0.264 Sum_probs=62.1
Q ss_pred ceeEEEEEEeCCCCEEEEEcccCCCCCchHHHHHHhhccc-ccCCCCCeEEECCEEEEEEEeCcEEEEEEEcCCccHHHH
Q 013709 3 VAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQT-KELGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVACA 81 (438)
Q Consensus 3 ~mI~~i~Il~~~G~~l~~r~y~~~~~~~~~~~f~~~v~~~-~~~~~~pi~~~~~~~~~~~~~~~l~~v~~~~~~~n~~~~ 81 (438)
|.|...+|. +|.++++.+ ... ..+ ...+.++++.. +.....-.++.+++.|-|...+++.|+|+++.+-.--.+
T Consensus 2 M~ilYa~VA--rg~~iLae~-t~~-~gn-f~~ia~~iL~kip~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~a 76 (189)
T 4b93_A 2 MAILFAVVA--RGTTILAKH-AWC-GGN-FLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRA 76 (189)
T ss_dssp CSEEEEEEE--ETTEEEEEE-ESS-EEC-HHHHHHHHHTTCCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHH
T ss_pred CceEEEEEE--eCCEEEEeC-CCC-CCC-HHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHH
Confidence 445555554 688888875 211 122 22233344432 211222367889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCC
Q 013709 82 FKFVVEAVALFKSYFGG 98 (438)
Q Consensus 82 ~~~L~~~~~vl~~y~~~ 98 (438)
+.||..+.+-+..-++.
T Consensus 77 f~fL~~i~~eF~~~~~~ 93 (189)
T 4b93_A 77 FSFLNEVKKRFQTTYGS 93 (189)
T ss_dssp HHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhhccc
Confidence 99999999888766664
No 13
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=93.37 E-value=0.25 Score=41.87 Aligned_cols=91 Identities=10% Similarity=0.183 Sum_probs=57.1
Q ss_pred ceeEEEEEEeCCCCEEEEEcccCCC----C-Cc----------hHHHHHHhhcccccCCC-CCeEEECCE-EEEEEEeCc
Q 013709 3 VAASAIYFLNLRGDVLINRLYRDDV----G-GN----------MVDAFRTHIMQTKELGT-CPVRQIGGC-SFFYMRISN 65 (438)
Q Consensus 3 ~mI~~i~Il~~~G~~l~~r~y~~~~----~-~~----------~~~~f~~~v~~~~~~~~-~pi~~~~~~-~~~~~~~~~ 65 (438)
|||.+++|+|+.|.+|.+|.|.... + .+ .+..+..++. +..+.. --.+.++.+ .++|....+
T Consensus 1 M~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~kls-p~~~~~~~~~~~t~~ykl~~~~T~Tg 79 (145)
T 2j3t_C 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMS-PLDMKDGFLSFQTSRYKLHYYETPTG 79 (145)
T ss_dssp -CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHC-SSCCSSCEEEEECSSCEEEEEECTTS
T ss_pred CeEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhC-CCCCCCceEEEecCCEEEEEEEcCCC
Confidence 8899999999999999999995432 1 11 1233333432 211111 124455664 567888899
Q ss_pred EEEEEEEcCCccHHHHHHHHHHHH-HHHHhhc
Q 013709 66 VYIVIVVSSNANVACAFKFVVEAV-ALFKSYF 96 (438)
Q Consensus 66 l~~v~~~~~~~n~~~~~~~L~~~~-~vl~~y~ 96 (438)
+-||++++.+++. +=++|+++. ++.-+|.
T Consensus 80 iKFvl~td~~~~~--i~~~l~~iy~~lYv~~v 109 (145)
T 2j3t_C 80 IKVVMNTDLGVGP--IRDVLHHIYSALYVEFV 109 (145)
T ss_dssp CEEEEEECTTCCC--CHHHHHHHHHTTHHHHT
T ss_pred CEEEEEecCCcch--HHHHHHHHHHHHHHHHH
Confidence 9999999876544 336677776 5666643
No 14
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=93.31 E-value=1.3 Score=39.93 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=22.3
Q ss_pred ceeEEEEEEeCCCCEEEEEcccCCCC
Q 013709 3 VAASAIYFLNLRGDVLINRLYRDDVG 28 (438)
Q Consensus 3 ~mI~~i~Il~~~G~~l~~r~y~~~~~ 28 (438)
|+|.+++|+|+.|..|.+|.|.....
T Consensus 1 M~i~sl~IiNk~GglIY~r~~~~~~~ 26 (219)
T 3cue_A 1 MAIETILVINKSGGLIYQRNFTNDEQ 26 (219)
T ss_dssp -CEEEEEEECTTSCEEEEEECSSCCC
T ss_pred CeeEEEEEEeCCCCEEeehhhccCcC
Confidence 89999999999999999999975543
No 15
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=92.46 E-value=1.3 Score=37.07 Aligned_cols=91 Identities=14% Similarity=0.109 Sum_probs=65.7
Q ss_pred eEEEEEEeCCCCEEEEEcccCCCC----CchHHHHHHhhccccc---CCCCCeE-EECCEEEEEEEeCcEEEEEEEcCCc
Q 013709 5 ASAIYFLNLRGDVLINRLYRDDVG----GNMVDAFRTHIMQTKE---LGTCPVR-QIGGCSFFYMRISNVYIVIVVSSNA 76 (438)
Q Consensus 5 I~~i~Il~~~G~~l~~r~y~~~~~----~~~~~~f~~~v~~~~~---~~~~pi~-~~~~~~~~~~~~~~l~~v~~~~~~~ 76 (438)
+.+|+|.|++|=+++.-....... .+.+..|....-+.++ ++...++ .++++.+++.....+++..++..+.
T Consensus 38 l~aI~ItDrDGVpi~kv~~~~~~e~~~r~s~lsTf~~A~dQ~sKLglGknksII~~Y~~yqvVq~n~~Plvit~Ias~~a 117 (143)
T 3cpt_A 38 LHAIVVSDRDGVPVIKVANDNAPEHALRPGFLSTFALATDQGSKLGLSKNKSIICYYNTYQVVQFNRLPLVVSFIASSSA 117 (143)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHHHHHHHHHHHHHTCCCEEEEEEECSSEEEEEEEETTEEEEEEEETTS
T ss_pred eEEEEEECCCCcEEEEecCCCCchhhcccchhhhHHHHHHHHhhcCCCCCceEEEEecCeEEEEEecCCEEEEEEecCCC
Confidence 689999999999998877543221 1345555433222211 3455555 7888899999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhh
Q 013709 77 NVACAFKFVVEAVALFKSY 95 (438)
Q Consensus 77 n~~~~~~~L~~~~~vl~~y 95 (438)
|.-.++.+=+.+..+|.+.
T Consensus 118 NtG~Il~Le~~L~p~l~~L 136 (143)
T 3cpt_A 118 NTGLIVSLEKELAPLFEEL 136 (143)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CchhHhhhHHHHHHHHHHH
Confidence 9999888877777777653
No 16
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=91.76 E-value=2.5 Score=36.69 Aligned_cols=91 Identities=18% Similarity=0.261 Sum_probs=62.5
Q ss_pred ceeEEEEEEeCCCCEEEEEcccCCCCCchHHHHHHhhccccc-CCCCCeEEECCEEEEEEEeCcEEEEEEEcCCccHHHH
Q 013709 3 VAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKE-LGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVACA 81 (438)
Q Consensus 3 ~mI~~i~Il~~~G~~l~~r~y~~~~~~~~~~~f~~~v~~~~~-~~~~pi~~~~~~~~~~~~~~~l~~v~~~~~~~n~~~~ 81 (438)
|.|...+|. +|.++|+.+ ... ..+. +...+.++.+-. ....-.++.+++.|-|...+++.|+|+++.+-.--.+
T Consensus 54 M~I~Ya~VA--rg~tiLAE~-t~~-~gnf-~~va~~iL~kip~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~a 128 (173)
T 4afi_A 54 MAILFAVVA--RGTTILAKH-AWC-GGNF-LEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRA 128 (173)
T ss_dssp CCEEEEEEE--ETTEEEEEE-ESS-CCCH-HHHHHHHHTTSCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHH
T ss_pred ccEEEEEEE--CCCEEEEEc-cCC-CCCH-HHHHHHHHHhCCCCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHH
Confidence 445555554 578888865 222 1222 234444443321 1222367889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCC
Q 013709 82 FKFVVEAVALFKSYFGG 98 (438)
Q Consensus 82 ~~~L~~~~~vl~~y~~~ 98 (438)
+.||..+.+-+..-++.
T Consensus 129 F~FLedI~~eF~~~yg~ 145 (173)
T 4afi_A 129 FSFLNEVKKRFQTTYGS 145 (173)
T ss_dssp HHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhch
Confidence 99999999888776664
No 17
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=91.60 E-value=2.6 Score=37.29 Aligned_cols=49 Identities=16% Similarity=0.310 Sum_probs=42.7
Q ss_pred eEEECCEEEEEEEeCcEEEEEEEcCCccHHHHHHHHHHHHHHHHhhcCC
Q 013709 50 VRQIGGCSFFYMRISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGG 98 (438)
Q Consensus 50 i~~~~~~~~~~~~~~~l~~v~~~~~~~n~~~~~~~L~~~~~vl~~y~~~ 98 (438)
.++.+++.|.|...+++.|+|+++.+-+.-.++.||..+.+-+..-++.
T Consensus 54 s~~~~~y~fhy~~~~gl~~l~i~d~~yp~r~af~fL~~i~~~F~~~~~~ 102 (196)
T 2nut_C 54 TLEAGAMTFHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGK 102 (196)
T ss_dssp EEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEeCCEEEEEEeCCCeEEEEEEcCCcchHHHHHHHHHHHHHHHHhccc
Confidence 5678899999999999999999999999999999999999887765554
No 18
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=90.70 E-value=0.39 Score=41.29 Aligned_cols=90 Identities=7% Similarity=0.165 Sum_probs=52.8
Q ss_pred ceeEEEEEEeCCCCEEEEEcccCC-------CC-C---c----------hHHHHHHhhcccccCCCC--CeEEECC-EEE
Q 013709 3 VAASAIYFLNLRGDVLINRLYRDD-------VG-G---N----------MVDAFRTHIMQTKELGTC--PVRQIGG-CSF 58 (438)
Q Consensus 3 ~mI~~i~Il~~~G~~l~~r~y~~~-------~~-~---~----------~~~~f~~~v~~~~~~~~~--pi~~~~~-~~~ 58 (438)
|||.+|+|+|+.|.+|..|.|... .. + + .+..|.+++. +.. ... -.+.++. ..+
T Consensus 1 M~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls-~~~-~~~~f~~~~T~~ykl~ 78 (159)
T 3cue_C 1 MGIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLS-KGS-VKNDIRSISTGKYRVH 78 (159)
T ss_dssp CCCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSC-CSS-SCCCEEEEECSSCBEE
T ss_pred CeEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhC-CCC-CCCCeEEEeeCCEEEE
Confidence 889999999999999999998531 11 1 1 1222333321 111 111 2233444 446
Q ss_pred EEEEeCcEEEEEEEcCCccHHHHHHHHHHHHH-HHHhhc
Q 013709 59 FYMRISNVYIVIVVSSNANVACAFKFVVEAVA-LFKSYF 96 (438)
Q Consensus 59 ~~~~~~~l~~v~~~~~~~n~~~~~~~L~~~~~-vl~~y~ 96 (438)
.|....++-||++++..++.+- ++|+++.+ +.-+|.
T Consensus 79 ~~eT~TgiKFvl~td~~~~~i~--~~l~~iy~~lYv~yv 115 (159)
T 3cue_C 79 TYCTASGLWFVLLSDFKQQSYT--QVLQYIYSHIYVKYV 115 (159)
T ss_dssp EECCSSCCEEEEECCSSSSCTH--HHHHHHHHHHHHHHH
T ss_pred EEEeCCCCEEEEEeCCCcchHH--HHHHHHHHHHHHHHH
Confidence 7788899999999987655433 45666664 555543
No 19
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=89.70 E-value=3.3 Score=34.61 Aligned_cols=92 Identities=4% Similarity=0.085 Sum_probs=55.6
Q ss_pred ce-eEEEEEEeCCCCEEEEEcccCCCCC----c--h---------HHHHHHhhcccccCCCCCeEEE---CC-EEEEEEE
Q 013709 3 VA-ASAIYFLNLRGDVLINRLYRDDVGG----N--M---------VDAFRTHIMQTKELGTCPVRQI---GG-CSFFYMR 62 (438)
Q Consensus 3 ~m-I~~i~Il~~~G~~l~~r~y~~~~~~----~--~---------~~~f~~~v~~~~~~~~~pi~~~---~~-~~~~~~~ 62 (438)
|+ |.+++|+|++|.+|..+.|...... . + ++.+.+. . +.. ...-...+ ++ ..+.|..
T Consensus 3 M~~i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~-~-~~~-~~~~l~~~~~~~~y~v~~~~T 79 (142)
T 2j3w_A 3 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDEN-M-WLS-NNMYLKTVDKFNEWFVSAFVT 79 (142)
T ss_dssp CCCCEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHH-G-GGC-SCSEEEEEEEETTEEEEEEEC
T ss_pred cceEEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHh-c-CCC-CcceeEeeecccceEEEEEEc
Confidence 77 8999999999999999999653221 1 1 1111111 1 111 11112233 33 3467888
Q ss_pred eCcEEEEEEEcCCccHHHHHHHHHHHHHHHHhhcCC
Q 013709 63 ISNVYIVIVVSSNANVACAFKFVVEAVALFKSYFGG 98 (438)
Q Consensus 63 ~~~l~~v~~~~~~~n~~~~~~~L~~~~~vl~~y~~~ 98 (438)
..++-||++++.. +...+-.+|+++.++.-+|.-+
T Consensus 80 ~tg~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~v~N 114 (142)
T 2j3w_A 80 AGHMRFIMLHDVR-QEDGIKNFFTDVYDLYIKFAMN 114 (142)
T ss_dssp TTCCEEEEEESSC-CHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCcEEEEEeCCC-CcHHHHHHHHHHHHHHHHHhcC
Confidence 8999999999763 3444556777777666665543
No 20
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=88.28 E-value=1.7 Score=37.62 Aligned_cols=82 Identities=16% Similarity=0.251 Sum_probs=56.3
Q ss_pred CCCEEEEEcccCCCCCchHHHHHHhhccccc-CCCCCeEEECCEEEEEEEeCcEEEEEEEcCCccHHHHHHHHHHHHHHH
Q 013709 14 RGDVLINRLYRDDVGGNMVDAFRTHIMQTKE-LGTCPVRQIGGCSFFYMRISNVYIVIVVSSNANVACAFKFVVEAVALF 92 (438)
Q Consensus 14 ~G~~l~~r~y~~~~~~~~~~~f~~~v~~~~~-~~~~pi~~~~~~~~~~~~~~~l~~v~~~~~~~n~~~~~~~L~~~~~vl 92 (438)
+|.++++.+ .+. . .-.....+.++++-. ....--++.+++.|-|...+++.|+|+++.+-.--.++.||..+.+-+
T Consensus 53 RG~~VLae~-t~~-~-gnf~~iak~ll~kl~~~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fLedI~~eF 129 (169)
T 2vx8_A 53 RGTTILAKH-AWC-G-GNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRF 129 (169)
T ss_dssp ETTEEEEEE-ESS-C-BSHHHHHHHHHTTSCSSCEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEe-ccC-C-CCHHHHHHHHHhhCCCCCCceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHHHHHHHHH
Confidence 466777654 322 1 222333344443321 122236788999998888999999999999999999999999999988
Q ss_pred HhhcCC
Q 013709 93 KSYFGG 98 (438)
Q Consensus 93 ~~y~~~ 98 (438)
..-++.
T Consensus 130 ~~~y~~ 135 (169)
T 2vx8_A 130 QTTYGS 135 (169)
T ss_dssp HHHHTT
T ss_pred HHHhhh
Confidence 776665
No 21
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=88.01 E-value=3.9 Score=36.29 Aligned_cols=96 Identities=14% Similarity=0.156 Sum_probs=63.3
Q ss_pred ceeEEEEEEeCCCC-E-EEEEcccC----CCCCchHHHH----HHhhcccccCCCCCeEEECCEEEE-EEEeCcEEEEEE
Q 013709 3 VAASAIYFLNLRGD-V-LINRLYRD----DVGGNMVDAF----RTHIMQTKELGTCPVRQIGGCSFF-YMRISNVYIVIV 71 (438)
Q Consensus 3 ~mI~~i~Il~~~G~-~-l~~r~y~~----~~~~~~~~~f----~~~v~~~~~~~~~pi~~~~~~~~~-~~~~~~l~~v~~ 71 (438)
|=|.++.|+...|+ + ++...|.= -..|+...+| .+.+..+......-.++.+++.|- |...+++.++|+
T Consensus 2 mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~~~r~s~~~~~y~fH~y~~~~gl~yl~i 81 (199)
T 3kyq_A 2 MKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRSDSLAGVVI 81 (199)
T ss_dssp CCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCTTEEEEEECSSEEEEEEECTTSEEEEEE
T ss_pred ceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCCCCeEEEEeCCEEEEEEEecCCEEEEEE
Confidence 44778888876664 3 33444421 1224444433 334443322112225677888876 888899999999
Q ss_pred EcCCccHHHHHHHHHHHHHHHHhhcCC
Q 013709 72 VSSNANVACAFKFVVEAVALFKSYFGG 98 (438)
Q Consensus 72 ~~~~~n~~~~~~~L~~~~~vl~~y~~~ 98 (438)
++.+-+--.++.||..+.+-+..-++.
T Consensus 82 td~~yp~r~AF~fL~ei~~eF~~~~~~ 108 (199)
T 3kyq_A 82 ADSEYPSRVAFTLLEKVLDEFSKQVDR 108 (199)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHSCG
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999888776663
No 22
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=85.68 E-value=5.9 Score=34.63 Aligned_cols=95 Identities=13% Similarity=0.076 Sum_probs=63.4
Q ss_pred ceeEEEEEEeCCCCEEEEEcccCCCCCchHHHHHHhhcccccCCCCCeEEECCEEEEEEEeCc--EEEEEEEcCCccHHH
Q 013709 3 VAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRTHIMQTKELGTCPVRQIGGCSFFYMRISN--VYIVIVVSSNANVAC 80 (438)
Q Consensus 3 ~mI~~i~Il~~~G~~l~~r~y~~~~~~~~~~~f~~~v~~~~~~~~~pi~~~~~~~~~~~~~~~--l~~v~~~~~~~n~~~ 80 (438)
.|+..+.|+++.|=+|-+..-......+.+..+.+.++-... ...+.+.+|++..-|...|+ |.||++-..--+...
T Consensus 9 ~~~D~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEER-~~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~Y 87 (185)
T 2fh5_A 9 SMVDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQER-GGNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTY 87 (185)
T ss_dssp CSCSEEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC--------CCCCCEEEEEEETTTTEEEEEEESCGGGHHH
T ss_pred cceeEEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhccc-cCCCceeEcCeEEEEEEeccCCEEEEEEEcccccchH
Confidence 589999999999988877422222334567777777664332 34456888998877776665 888888877667777
Q ss_pred HHHHHHHHHHHHHhhcCC
Q 013709 81 AFKFVVEAVALFKSYFGG 98 (438)
Q Consensus 81 ~~~~L~~~~~vl~~y~~~ 98 (438)
+=+||..+...+.+-++.
T Consensus 88 iD~LL~~v~~~Fv~~Y~~ 105 (185)
T 2fh5_A 88 VDKLIDDVHRLFRDKYRT 105 (185)
T ss_dssp HHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777888877777666643
No 23
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Probab=85.29 E-value=5.6 Score=33.01 Aligned_cols=71 Identities=10% Similarity=0.190 Sum_probs=48.1
Q ss_pred eeEEEEEEeCCCCEEEEEc-ccCCCCCchHHHHHHhhccccc------------CCCCCeEEE-------CCEEEEEE--
Q 013709 4 AASAIYFLNLRGDVLINRL-YRDDVGGNMVDAFRTHIMQTKE------------LGTCPVRQI-------GGCSFFYM-- 61 (438)
Q Consensus 4 mI~~i~Il~~~G~~l~~r~-y~~~~~~~~~~~f~~~v~~~~~------------~~~~pi~~~-------~~~~~~~~-- 61 (438)
||.++.|+.+.|++|+.-. +........+..|...++..+- +-.-+++.+ +++.+.|.
T Consensus 1 M~dQf~IFTp~GqVLy~yn~l~kKf~e~qiN~fIS~LitsP~~~~~~~s~~~~~~~k~~~~~i~~~~k~~~~f~~~~~~s 80 (158)
T 1nrj_A 1 MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVTRKESVANANTDGFDFNLLTINSEHKNSPSFNALFYLN 80 (158)
T ss_dssp CCCEEEEECTTCBEEEEEETTSCCCCHHHHHHHHHHHHHSCCCGGGEECSGGGTTCCEEEEECC--------CEEEEEEE
T ss_pred CcceEEEeccCceEEEEecccCcchHHHHHHHHHHHHhcCCcccccccccccccccceeeEeecccccCCCCeeEEEEec
Confidence 8999999999999998755 2223345577788888775331 113467777 77777663
Q ss_pred EeCcEEEEEEEcC
Q 013709 62 RISNVYIVIVVSS 74 (438)
Q Consensus 62 ~~~~l~~v~~~~~ 74 (438)
+.-.||||++--.
T Consensus 81 kQP~LyfVvtyae 93 (158)
T 1nrj_A 81 KQPELYFVVTFAE 93 (158)
T ss_dssp ETTEEEEEEEESS
T ss_pred CCCcEEEEEEecc
Confidence 6678999988643
No 24
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=29.01 E-value=40 Score=30.19 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.6
Q ss_pred ceeEEEEEEeCCCCEEEEEccc
Q 013709 3 VAASAIYFLNLRGDVLINRLYR 24 (438)
Q Consensus 3 ~mI~~i~Il~~~G~~l~~r~y~ 24 (438)
|.|.++||+|+.|..+..+.|.
T Consensus 1 m~iy~~yi~~~~~~liy~~~~~ 22 (219)
T 2j3t_D 1 MAIFSVYVVNKAGGLIYQLDSY 22 (219)
T ss_dssp -CEEEEEEECTTSCEEEEEECC
T ss_pred CeEEEEEEEecCCceEEecccC
Confidence 7799999999999999998876
No 25
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=27.01 E-value=1.2e+02 Score=24.47 Aligned_cols=44 Identities=16% Similarity=0.442 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhhcCCcCCHHH-HHhhHHHHHHHHHHHHcCCeec
Q 013709 81 AFKFVVEAVALFKSYFGGAFDEDA-IRNNFVLIYELLDEIMDFGYPQ 126 (438)
Q Consensus 81 ~~~~L~~~~~vl~~y~~~~l~e~~-i~~n~~~i~~lldE~id~G~p~ 126 (438)
=++++.+|+..+.. ...=+++. -+.+|..|.+++.+|=+.|.|=
T Consensus 64 Q~~lv~~I~~~fE~--~~~~D~~~~~~~~~~~i~~Lmq~mQ~~G~PP 108 (126)
T 2wl8_A 64 QHSVMCKICEQFEA--ETPTDSETTQKARFEMVLDLMQQLQDLGHPP 108 (126)
T ss_dssp HHHHHHHHHHHHHH--CCTTCCHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHcC--CCCCchhhhHHHHHHHHHHHHHHHHHcCCCc
Confidence 45667777777765 11012233 3578999999999999999885
Done!