BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013710
(437 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 92/170 (54%), Gaps = 5/170 (2%)
Query: 192 HKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNG 249
+ L+ + + N TG IP L S L + S N L G IP+S+ L L+ L L N
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 250 LNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDL 309
L GEIP + + L+ + L N L+G +P +++ T++ + LS+N+L G IP++ L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 310 KKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNHTVLSSKLK 359
+ L L L NN+F G +P A + + + + NTNL +N T+ ++ K
Sbjct: 514 ENLAILKLSNNSFSGNIP--AELGDCRSLIWLDLNTNL-FNGTIPAAMFK 560
Score = 78.2 bits (191), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 112/207 (54%), Gaps = 11/207 (5%)
Query: 141 DLSLSLLS--FSCIHSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVT 198
DLS + LS + + SL SG+ +F+N++ T+ + GL + + L + +
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGL---KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162
Query: 199 ISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSI 258
IS ANV G++ L H+ SGN++ G + S + NL+ L++SSN + IP +
Sbjct: 163 ISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIPF-L 219
Query: 259 GDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQ 318
GD AL+++ ++ N LSG ++++ T++ L++SSNQ G IP LK L+YL+L
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLA 277
Query: 319 NNNFHGVLP-FNASILEKLQVFKVGGN 344
N F G +P F + + L + GN
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGN 304
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 80/156 (51%), Gaps = 4/156 (2%)
Query: 194 LRSVTISNANVTGYIPKHLHSN----LTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNG 249
L ++ +S+ N +G I +L N L + N GKIP +++ L L+LS N
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429
Query: 250 LNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDL 309
L+G IPSS+G L L+++ L N L G +P+ + + + L L N L G IP S+
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Query: 310 KKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNT 345
L +++L NN G +P LE L + K+ N+
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 61/106 (57%), Gaps = 2/106 (1%)
Query: 213 HSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASN 272
+ ++ +D S N L G IP I + L LNL N ++G IP +GDL L + L+SN
Sbjct: 631 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 690
Query: 273 SLSGSVPESMASLTDMVHLDLSSNQLNGTIPRF--FSDLKKLRYLN 316
L G +P++M++LT + +DLS+N L+G IP F ++LN
Sbjct: 691 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 736
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 70/129 (54%), Gaps = 5/129 (3%)
Query: 214 SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNS 273
S L H+D SGN+L G +I+ L+ LN+SSN G IP L +L+ +SLA N
Sbjct: 223 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENK 280
Query: 274 LSGSVPESMASLTD-MVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASI 332
+G +P+ ++ D + LDLS N G +P FF L L L +NNF G LP +
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT-- 338
Query: 333 LEKLQVFKV 341
L K++ KV
Sbjct: 339 LLKMRGLKV 347
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 54/88 (61%)
Query: 240 LQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLN 299
+ L++S N L+G IP IG + L ++L N +SGS+P+ + L + LDLSSN+L+
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Query: 300 GTIPRFFSDLKKLRYLNLQNNNFHGVLP 327
G IP+ S L L ++L NNN G +P
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 97/239 (40%), Gaps = 55/239 (23%)
Query: 156 HHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHS- 214
+ LSG F T+L + N+ N + + L+ ++++ TG IP L
Sbjct: 233 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGA 292
Query: 215 --NLTHVDFSGNQLKGKIP-------------------------TSITLLENLQHLNLSS 247
LT +D SGN G +P ++ + L+ L+LS
Sbjct: 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352
Query: 248 NGLNGEIPSSIGDLIA---------------------------LKNVSLASNSLSGSVPE 280
N +GE+P S+ +L A L+ + L +N +G +P
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Query: 281 SMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVF 339
++++ +++V L LS N L+GTIP L KLR L L N G +P ++ L+
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 471
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 82/205 (40%), Gaps = 48/205 (23%)
Query: 188 IGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNL 245
+ N L +++SN +TG IPK + NL + S N G IP + +L L+L
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545
Query: 246 SSNGLNGEIPSSI--------------------------------GDLIALKNV-SLASN 272
++N NG IP+++ G+L+ + + S N
Sbjct: 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605
Query: 273 SLSGSVPESMASLT-------------DMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQN 319
LS P ++ S M+ LD+S N L+G IP+ + L LNL +
Sbjct: 606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665
Query: 320 NNFHGVLPFNASILEKLQVFKVGGN 344
N+ G +P L L + + N
Sbjct: 666 NDISGSIPDEVGDLRGLNILDLSSN 690
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/244 (20%), Positives = 96/244 (39%), Gaps = 52/244 (21%)
Query: 152 IHSLHHLSGVFLSRFVNLTDLTVTNVPVN--ASGLYVIIGNMHKLRSVTISNANVTGYIP 209
I + L+G S N T+L ++ N + IG + L + +SN + +G IP
Sbjct: 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Query: 210 KHLHS--NLTHVDFSGNQLKGKIPTSI---------TLLENLQHLNLSSNGLNGEIPSSI 258
L +L +D + N G IP ++ + +++ + ++G+ E +
Sbjct: 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA- 590
Query: 259 GDLIALKNV--------------------------------------SLASNSLSGSVPE 280
G+L+ + + ++ N LSG +P+
Sbjct: 591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650
Query: 281 SMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFK 340
+ S+ + L+L N ++G+IP DL+ L L+L +N G +P S L L
Sbjct: 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710
Query: 341 VGGN 344
+ N
Sbjct: 711 LSNN 714
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 92/170 (54%), Gaps = 5/170 (2%)
Query: 192 HKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNG 249
+ L+ + + N TG IP L S L + S N L G IP+S+ L L+ L L N
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 250 LNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDL 309
L GEIP + + L+ + L N L+G +P +++ T++ + LS+N+L G IP++ L
Sbjct: 451 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 510
Query: 310 KKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNHTVLSSKLK 359
+ L L L NN+F G +P A + + + + NTNL +N T+ ++ K
Sbjct: 511 ENLAILKLSNNSFSGNIP--AELGDCRSLIWLDLNTNL-FNGTIPAAMFK 557
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 112/207 (54%), Gaps = 11/207 (5%)
Query: 141 DLSLSLLS--FSCIHSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVT 198
DLS + LS + + SL SG+ +F+N++ T+ + GL + + L + +
Sbjct: 103 DLSRNSLSGPVTTLTSLGSCSGL---KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 159
Query: 199 ISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSI 258
IS ANV G++ L H+ SGN++ G + S + NL+ L++SSN + IP +
Sbjct: 160 ISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV--NLEFLDVSSNNFSTGIPF-L 216
Query: 259 GDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQ 318
GD AL+++ ++ N LSG ++++ T++ L++SSNQ G IP LK L+YL+L
Sbjct: 217 GDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLA 274
Query: 319 NNNFHGVLP-FNASILEKLQVFKVGGN 344
N F G +P F + + L + GN
Sbjct: 275 ENKFTGEIPDFLSGACDTLTGLDLSGN 301
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 80/156 (51%), Gaps = 4/156 (2%)
Query: 194 LRSVTISNANVTGYIPKHLHSN----LTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNG 249
L ++ +S+ N +G I +L N L + N GKIP +++ L L+LS N
Sbjct: 367 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 426
Query: 250 LNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDL 309
L+G IPSS+G L L+++ L N L G +P+ + + + L L N L G IP S+
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 486
Query: 310 KKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNT 345
L +++L NN G +P LE L + K+ N+
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 522
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 61/106 (57%), Gaps = 2/106 (1%)
Query: 213 HSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASN 272
+ ++ +D S N L G IP I + L LNL N ++G IP +GDL L + L+SN
Sbjct: 628 NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN 687
Query: 273 SLSGSVPESMASLTDMVHLDLSSNQLNGTIPRF--FSDLKKLRYLN 316
L G +P++M++LT + +DLS+N L+G IP F ++LN
Sbjct: 688 KLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLN 733
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/129 (38%), Positives = 70/129 (54%), Gaps = 5/129 (3%)
Query: 214 SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNS 273
S L H+D SGN+L G +I+ L+ LN+SSN G IP L +L+ +SLA N
Sbjct: 220 SALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENK 277
Query: 274 LSGSVPESMASLTD-MVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASI 332
+G +P+ ++ D + LDLS N G +P FF L L L +NNF G LP +
Sbjct: 278 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT-- 335
Query: 333 LEKLQVFKV 341
L K++ KV
Sbjct: 336 LLKMRGLKV 344
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 54/88 (61%)
Query: 240 LQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLN 299
+ L++S N L+G IP IG + L ++L N +SGS+P+ + L + LDLSSN+L+
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 690
Query: 300 GTIPRFFSDLKKLRYLNLQNNNFHGVLP 327
G IP+ S L L ++L NNN G +P
Sbjct: 691 GRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 97/239 (40%), Gaps = 55/239 (23%)
Query: 156 HHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHS- 214
+ LSG F T+L + N+ N + + L+ ++++ TG IP L
Sbjct: 230 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGA 289
Query: 215 --NLTHVDFSGNQLKGKIP-------------------------TSITLLENLQHLNLSS 247
LT +D SGN G +P ++ + L+ L+LS
Sbjct: 290 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 349
Query: 248 NGLNGEIPSSIGDLIA---------------------------LKNVSLASNSLSGSVPE 280
N +GE+P S+ +L A L+ + L +N +G +P
Sbjct: 350 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 409
Query: 281 SMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVF 339
++++ +++V L LS N L+GTIP L KLR L L N G +P ++ L+
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL 468
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 82/205 (40%), Gaps = 48/205 (23%)
Query: 188 IGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNL 245
+ N L +++SN +TG IPK + NL + S N G IP + +L L+L
Sbjct: 483 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 542
Query: 246 SSNGLNGEIPSSI--------------------------------GDLIALKNV-SLASN 272
++N NG IP+++ G+L+ + + S N
Sbjct: 543 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 602
Query: 273 SLSGSVPESMASLT-------------DMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQN 319
LS P ++ S M+ LD+S N L+G IP+ + L LNL +
Sbjct: 603 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 662
Query: 320 NNFHGVLPFNASILEKLQVFKVGGN 344
N+ G +P L L + + N
Sbjct: 663 NDISGSIPDEVGDLRGLNILDLSSN 687
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/244 (20%), Positives = 96/244 (39%), Gaps = 52/244 (21%)
Query: 152 IHSLHHLSGVFLSRFVNLTDLTVTNVPVN--ASGLYVIIGNMHKLRSVTISNANVTGYIP 209
I + L+G S N T+L ++ N + IG + L + +SN + +G IP
Sbjct: 469 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
Query: 210 KHLHS--NLTHVDFSGNQLKGKIPTSI---------TLLENLQHLNLSSNGLNGEIPSSI 258
L +L +D + N G IP ++ + +++ + ++G+ E +
Sbjct: 529 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA- 587
Query: 259 GDLIALKNV--------------------------------------SLASNSLSGSVPE 280
G+L+ + + ++ N LSG +P+
Sbjct: 588 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 647
Query: 281 SMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFK 340
+ S+ + L+L N ++G+IP DL+ L L+L +N G +P S L L
Sbjct: 648 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 707
Query: 341 VGGN 344
+ N
Sbjct: 708 LSNN 711
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 91/210 (43%), Gaps = 50/210 (23%)
Query: 188 IGNMHKLRSVTISNANVTGYIPKHLHS--NLTHVDFSGNQLKGKIPTSITLLENLQHLNL 245
I + +L + I++ NV+G IP L L +DFS N L G +P SI+ L NL +
Sbjct: 97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156
Query: 246 SSNGLNGEIPSSIGDLIAL-KNVSLASNSLSGSVPESMASL------------------- 285
N ++G IP S G L +++++ N L+G +P + A+L
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL 216
Query: 286 ------TDMVHL---------------------DLSSNQLNGTIPRFFSDLKKLRYLNLQ 318
T +HL DL +N++ GT+P+ + LK L LN+
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276
Query: 319 NNNFHGVLPFNASILEKLQVFKVGGNTNLC 348
NN G +P + L++ V N LC
Sbjct: 277 FNNLCGEIPQGGN-LQRFDVSAYANNKCLC 305
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 66/125 (52%), Gaps = 6/125 (4%)
Query: 208 IPKHLHSNLTHVDF----SGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIA 263
IP L +NL +++F N L G IP +I L L +L ++ ++G IP + +
Sbjct: 68 IPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 264 LKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKL-RYLNLQNNNF 322
L + + N+LSG++P S++SL ++V + N+++G IP + KL + + N
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 323 HGVLP 327
G +P
Sbjct: 187 TGKIP 191
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
Query: 218 HVDFSGNQLKGKIPTSITLLENLQHLNL----SSNGLNGEIPSSIGDLIALKNVSLASNS 273
++D SG L P +L NL +LN N L G IP +I L L + + +
Sbjct: 54 NLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN 112
Query: 274 LSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASIL 333
+SG++P+ ++ + +V LD S N L+GT+P S L L + N G +P +
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172
Query: 334 EKL 336
KL
Sbjct: 173 SKL 175
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Query: 209 PKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLN----GEIPSSIGDLIAL 264
P L S L D G + + T + +L+LS GLN IPSS+ +L L
Sbjct: 21 PTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLS--GLNLPKPYPIPSSLANLPYL 78
Query: 265 KNVSLAS-NSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFH 323
+ + N+L G +P ++A LT + +L ++ ++G IP F S +K L L+ N
Sbjct: 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS 138
Query: 324 GVLPFNASILEKLQVFKVGGN 344
G LP + S L L GN
Sbjct: 139 GTLPPSISSLPNLVGITFDGN 159
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 54/117 (46%), Gaps = 6/117 (5%)
Query: 143 SLSLLSFSCIHSLHHLSGVFLSRFVNL----TDLTVTNVPVNASGLYVIIGNMHKLRSVT 198
S S L S S + L+G F NL DL+ + +AS L+ N K+
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230
Query: 199 ISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIP 255
S A G + L NL +D N++ G +P +T L+ L LN+S N L GEIP
Sbjct: 231 NSLAFDLGKV--GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 105/228 (46%), Gaps = 26/228 (11%)
Query: 126 LTFFN---CPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVF-------------LSRFVNL 169
LT FN I P+ +L+ LS + I + LSG+ L NL
Sbjct: 116 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANL 175
Query: 170 TDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGK 229
T L ++ N ++ + L S+ +N ++ P + +NL + +GNQLK
Sbjct: 176 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK-D 234
Query: 230 IPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMV 289
I T + L NL L+L++N ++ P + L L + L +N +S P +A LT +
Sbjct: 235 IGT-LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALT 289
Query: 290 HLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQ 337
+L+L+ NQL P S+LK L YL L NN + P S L KLQ
Sbjct: 290 NLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQ 333
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 11/155 (7%)
Query: 190 NMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNG 249
N+ KL + ++N + P +NLT + NQ+ P + L NL L LSSN
Sbjct: 87 NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNT 144
Query: 250 LNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDL 309
++ S++ L +L+ +S N ++ P +A+LT + LD+SSN+++ + L
Sbjct: 145 ISD--ISALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKL 197
Query: 310 KKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGN 344
L L NN + P IL L + GN
Sbjct: 198 TNLESLIATNNQISDITPL--GILTNLDELSLNGN 230
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 105/228 (46%), Gaps = 26/228 (11%)
Query: 126 LTFFN---CPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVF-------------LSRFVNL 169
LT FN I P+ +L+ LS + I + LSG+ L NL
Sbjct: 117 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANL 176
Query: 170 TDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGK 229
T L ++ N ++ + L S+ +N ++ P + +NL + +GNQLK
Sbjct: 177 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLK-D 235
Query: 230 IPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMV 289
I T + L NL L+L++N ++ P + L L + L +N +S P +A LT +
Sbjct: 236 IGT-LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALT 290
Query: 290 HLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQ 337
+L+L+ NQL P S+LK L YL L NN + P S L KLQ
Sbjct: 291 NLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 334
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 11/155 (7%)
Query: 190 NMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNG 249
N+ KL + ++N + P +NLT + NQ+ P + L NL L LSSN
Sbjct: 88 NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNT 145
Query: 250 LNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDL 309
++ S++ L +L+ +S N ++ P +A+LT + LD+SSN+++ + L
Sbjct: 146 ISD--ISALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKL 198
Query: 310 KKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGN 344
L L NN + P IL L + GN
Sbjct: 199 TNLESLIATNNQISDITPL--GILTNLDELSLNGN 231
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 105/230 (45%), Gaps = 30/230 (13%)
Query: 126 LTFFN---CPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVF-------------LSRFVNL 169
LT FN I P+ +L+ LS + I + LSG+ L NL
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANL 171
Query: 170 TDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLK-- 227
T L ++ N ++ + L S+ +N ++ P + +NL + +GNQLK
Sbjct: 172 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI 231
Query: 228 GKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTD 287
G + + L NL L+L++N ++ P + L L + L +N +S P +A LT
Sbjct: 232 GTLAS----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 283
Query: 288 MVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQ 337
+ +L+L+ NQL P S+LK L YL L NN + P S L KLQ
Sbjct: 284 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 329
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 11/157 (7%)
Query: 188 IGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSS 247
+ N+ KL + ++N + P +NLT + NQ+ P + L NL L LSS
Sbjct: 81 LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS 138
Query: 248 NGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFS 307
N ++ S++ L +L+ ++ N ++ P +A+LT + LD+SSN+++ +
Sbjct: 139 NTISD--ISALSGLTSLQQLNFG-NQVTDLKP--LANLTTLERLDISSNKVSDI--SVLA 191
Query: 308 DLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGN 344
L L L NN + P IL L + GN
Sbjct: 192 KLTNLESLIATNNQISDITPL--GILTNLDELSLNGN 226
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 105/230 (45%), Gaps = 30/230 (13%)
Query: 126 LTFFN---CPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVF-------------LSRFVNL 169
LT FN I P+ +L+ LS + I + LSG+ L NL
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANL 171
Query: 170 TDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLK-- 227
T L ++ N ++ + L S+ +N ++ P + +NL + +GNQLK
Sbjct: 172 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI 231
Query: 228 GKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTD 287
G + + L NL L+L++N ++ P + L L + L +N +S P +A LT
Sbjct: 232 GTLAS----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 283
Query: 288 MVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQ 337
+ +L+L+ NQL P S+LK L YL L NN + P S L KLQ
Sbjct: 284 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 329
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 11/157 (7%)
Query: 188 IGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSS 247
+ N+ KL + ++N + P +NLT + NQ+ P + L NL L LSS
Sbjct: 81 LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS 138
Query: 248 NGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFS 307
N ++ S++ L +L+ ++ N ++ P +A+LT + LD+SSN+++ +
Sbjct: 139 NTISD--ISALSGLTSLQQLNFG-NQVTDLKP--LANLTTLERLDISSNKVSDI--SVLA 191
Query: 308 DLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGN 344
L L L NN + P IL L + GN
Sbjct: 192 KLTNLESLIATNNQISDITPL--GILTNLDELSLNGN 226
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 105/231 (45%), Gaps = 31/231 (13%)
Query: 126 LTFFN---CPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVF--------------LSRFVN 168
LT FN I P+ +L+ LS + I + LSG+ L N
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLAN 171
Query: 169 LTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLK- 227
LT L ++ N ++ + L S+ +N ++ P + +NL + +GNQLK
Sbjct: 172 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 231
Query: 228 -GKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLT 286
G + + L NL L+L++N ++ P + L L + L +N +S P +A LT
Sbjct: 232 IGTLAS----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLT 283
Query: 287 DMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQ 337
+ +L+L+ NQL P S+LK L YL L NN + P S L KLQ
Sbjct: 284 ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 330
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 10/157 (6%)
Query: 188 IGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSS 247
+ N+ KL + ++N + P +NLT + NQ+ P + L NL L LSS
Sbjct: 81 LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS 138
Query: 248 NGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFS 307
N ++ S++ L +L+ +S +SN ++ P +A+LT + LD+SSN+++ +
Sbjct: 139 NTISD--ISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLA 192
Query: 308 DLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGN 344
L L L NN + P IL L + GN
Sbjct: 193 KLTNLESLIATNNQISDITPL--GILTNLDELSLNGN 227
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 105/231 (45%), Gaps = 31/231 (13%)
Query: 126 LTFFN---CPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVF--------------LSRFVN 168
LT FN I P+ +L+ LS + I + LSG+ L N
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLAN 171
Query: 169 LTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLK- 227
LT L ++ N ++ + L S+ +N ++ P + +NL + +GNQLK
Sbjct: 172 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 231
Query: 228 -GKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLT 286
G + + L NL L+L++N ++ P + L L + L +N +S P +A LT
Sbjct: 232 IGTLAS----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLT 283
Query: 287 DMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQ 337
+ +L+L+ NQL P S+LK L YL L NN + P S L KLQ
Sbjct: 284 ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV--SSLTKLQ 330
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 10/157 (6%)
Query: 188 IGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSS 247
+ N+ KL + ++N + P +NLT + NQ+ P + L NL L LSS
Sbjct: 81 LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS 138
Query: 248 NGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFS 307
N ++ S++ L +L+ +S +SN ++ P +A+LT + LD+SSN+++ +
Sbjct: 139 NTISD--ISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLA 192
Query: 308 DLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGN 344
L L L NN + P IL L + GN
Sbjct: 193 KLTNLESLIATNNQISDITPL--GILTNLDELSLNGN 227
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 105/231 (45%), Gaps = 31/231 (13%)
Query: 126 LTFFN---CPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVF--------------LSRFVN 168
LT FN I P+ +L+ LS + I + LSG+ L N
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLAN 171
Query: 169 LTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLK- 227
LT L ++ N ++ + L S+ +N ++ P + +NL + +GNQLK
Sbjct: 172 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD 231
Query: 228 -GKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLT 286
G + + L NL L+L++N ++ P + L L + L +N +S P +A LT
Sbjct: 232 IGTLAS----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLT 283
Query: 287 DMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQ 337
+ +L+L+ NQL P S+LK L YL L NN + P S L KLQ
Sbjct: 284 ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 330
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 10/157 (6%)
Query: 188 IGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSS 247
+ N+ KL + ++N + P +NLT + NQ+ P + L NL L LSS
Sbjct: 81 LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSS 138
Query: 248 NGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFS 307
N ++ S++ L +L+ ++ +SN ++ P +A+LT + LD+SSN+++ +
Sbjct: 139 NTISD--ISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLA 192
Query: 308 DLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGN 344
L L L NN + P IL L + GN
Sbjct: 193 KLTNLESLIATNNQISDITPL--GILTNLDELSLNGN 227
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 8/152 (5%)
Query: 215 NLTHVDFSGNQLKGKIPTSITL-LENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNS 273
L H+DF + LK S+ L L NL +L++S L +L+ + +A NS
Sbjct: 102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161
Query: 274 LSGS-VPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASI 332
+ +P+ L ++ LDLS QL P F+ L L+ LN+ +NNF + F
Sbjct: 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221
Query: 333 LEKLQVFKVGGNTNLCYNHTVLSSKLKLGIAP 364
L LQV NH + S K +L P
Sbjct: 222 LNSLQVLDYS------LNHIMTSKKQELQHFP 247
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 10/144 (6%)
Query: 208 IPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDL--IALK 265
+P + S+ T ++ N+L+ L L L+LSSNGL+ + S D +LK
Sbjct: 22 VPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK 81
Query: 266 NVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRF--FSDLKKLRYLNLQNNNFH 323
+ L+ N + ++ + L + HLD + L + F F L+ L YL++ + H
Sbjct: 82 YLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHT--H 137
Query: 324 GVLPFNASI--LEKLQVFKVGGNT 345
+ FN L L+V K+ GN+
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNS 161
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 161 VFLS-RFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHS--NLT 217
VFLS R + D++ T+ V +G++ + ++ L+ N+ ++P NLT
Sbjct: 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA--GNSFQENFLPDIFTELRNLT 178
Query: 218 HVDFSGNQLKGKIPTSITLLENLQHLNLSSNGL 250
+D S QL+ PT+ L +LQ LN+S N
Sbjct: 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 68/153 (44%), Gaps = 8/153 (5%)
Query: 214 SNLTHVDFSGNQLKGKIPTSITL-LENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASN 272
L H+DF + LK S+ L L NL +L++S L +L+ + +A N
Sbjct: 420 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 479
Query: 273 SLSGS-VPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNAS 331
S + +P+ L ++ LDLS QL P F+ L L+ LN+ +NNF + F
Sbjct: 480 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 539
Query: 332 ILEKLQVFKVGGNTNLCYNHTVLSSKLKLGIAP 364
L LQV NH + S K +L P
Sbjct: 540 CLNSLQVLDYS------LNHIMTSKKQELQHFP 566
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 214 SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNS 273
S+L+ + +GN ++ + + L +LQ L L IG L LK +++A N
Sbjct: 100 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 159
Query: 274 L-SGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKL 312
+ S +PE ++LT++ HLDLSSN++ + +DL+ L
Sbjct: 160 IQSFKLPEYFSNLTNLEHLDLSSNKIQSI---YCTDLRVL 196
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 161 VFLS-RFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHS--NLT 217
VFLS R + D++ T+ V +G++ + ++ L+ N+ ++P NLT
Sbjct: 440 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA--GNSFQENFLPDIFTELRNLT 497
Query: 218 HVDFSGNQLKGKIPTSITLLENLQHLNLSSNGL 250
+D S QL+ PT+ L +LQ LN+S N
Sbjct: 498 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 68/153 (44%), Gaps = 8/153 (5%)
Query: 214 SNLTHVDFSGNQLKGKIPTSITL-LENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASN 272
L H+DF + LK S+ L L NL +L++S L +L+ + +A N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455
Query: 273 SLSGS-VPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNAS 331
S + +P+ L ++ LDLS QL P F+ L L+ LN+ +NNF + F
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 515
Query: 332 ILEKLQVFKVGGNTNLCYNHTVLSSKLKLGIAP 364
L LQV NH + S K +L P
Sbjct: 516 CLNSLQVLDYS------LNHIMTSKKQELQHFP 542
Score = 34.7 bits (78), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 214 SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNS 273
S+L+ + +GN ++ + + L +LQ L L IG L LK +++A N
Sbjct: 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135
Query: 274 L-SGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKL 312
+ S +PE ++LT++ HLDLSSN++ + +DL+ L
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSI---YCTDLRVL 172
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 161 VFLS-RFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHS--NLT 217
VFLS R + D++ T+ V +G++ + ++ L+ N+ ++P NLT
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA--GNSFQENFLPDIFTELRNLT 473
Query: 218 HVDFSGNQLKGKIPTSITLLENLQHLNLSSNGL 250
+D S QL+ PT+ L +LQ LN+S N
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 9/135 (6%)
Query: 215 NLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGD-LIALKNVSLASNS 273
NL + NQLK P L L +L+L N L +P + D L +LK + L +N
Sbjct: 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQ 168
Query: 274 LSGSVPE-SMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNF----HGVLPF 328
L VPE + LT++ L L +NQL F L+KL+ L LQ N + +G++ +
Sbjct: 169 LK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGII-Y 226
Query: 329 NASILEKLQVFKVGG 343
A L+K +GG
Sbjct: 227 MAKWLKKKADEGLGG 241
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 79/190 (41%), Gaps = 14/190 (7%)
Query: 191 MHKLRSVTISNANVTGYIPKHLHSNLTHVD---FSGNQLKGKIPTSI-TLLENLQHLNLS 246
+ KLR + + N N +P + L +++ + N+L+ +P + L NL L L
Sbjct: 60 LTKLRLLYL-NDNKLQTLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLD 117
Query: 247 SNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESM-ASLTDMVHLDLSSNQLNGTIPRF 305
N L P L L +SL N L S+P+ + LT + L L +NQL
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGA 176
Query: 306 FSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLC------YNHTVLSSKLK 359
F L +L+ L L NN V LEKL++ ++ N C Y L K
Sbjct: 177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKAD 236
Query: 360 LGIAPCDKHG 369
G+ D G
Sbjct: 237 EGLGGVDTAG 246
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 3/131 (2%)
Query: 196 SVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIP 255
SV S+ +T IP ++ ++ +D N+L + L L+ L L+ N L +P
Sbjct: 20 SVDCSSKKLTA-IPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLP 77
Query: 256 SSI-GDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRY 314
+ I +L L+ + + N L L ++ L L NQL PR F L KL Y
Sbjct: 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY 137
Query: 315 LNLQNNNFHGV 325
L+L N +
Sbjct: 138 LSLGYNELQSL 148
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 10/148 (6%)
Query: 159 SGVFLSRFVNLTDLTVTNVPVNA--SGLYVIIGNMHKLRSVTISNANVTGYIPKHLHS-- 214
+G+F NL L VT+ + A G++ + N+ +LR + + P+ S
Sbjct: 78 AGIF-KELKNLETLWVTDNKLQALPIGVFDQLVNLAELR---LDRNQLKSLPPRVFDSLT 133
Query: 215 NLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSL 274
LT++ N+L+ L +L+ L L +N L + L LK + L +N L
Sbjct: 134 KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Query: 275 SGSVPE-SMASLTDMVHLDLSSNQLNGT 301
VPE + SL + L L N + T
Sbjct: 194 K-RVPEGAFDSLEKLKMLQLQENPWDCT 220
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 63/149 (42%), Gaps = 14/149 (9%)
Query: 209 PKHLHSNLTHVDFSGNQLKGKIPTSI-----TLLENLQHL-NLSSNGLNGEIPSSIGDLI 262
P H T VD +G LK +IP I LL N L +SS+GL G +P
Sbjct: 3 PAMCHCEGTTVDCTGRGLK-EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPH------ 55
Query: 263 ALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNF 322
L + L N L+G P + + + L L N++ + F L +L+ LNL +N
Sbjct: 56 -LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114
Query: 323 HGVLPFNASILEKLQVFKVGGNTNLCYNH 351
V+P + L L + N C H
Sbjct: 115 SCVMPGSFEHLNSLTSLNLASNPFNCNCH 143
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 230 IPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMV 289
IP+ +T E ++ L+LS+N + S + + L+ + L SN ++ +S +SL +
Sbjct: 20 IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 77
Query: 290 HLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNA-SILEKLQVFKVG 342
HLDLS N L+ +F L L +LNL N + + + S L KLQ+ +VG
Sbjct: 78 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG 131
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 6/107 (5%)
Query: 237 LENLQHLNLSSNGLNGEI--PSSIGDLI-ALKNVSLASNSLSG--SVPESMASLTDMVHL 291
L++L++L+LS N + E S+ D +L+ + L N L+ E++ +L ++ ++
Sbjct: 333 LKSLEYLDLSENLMVEEYLKNSACEDAWPSLQTLILRQNHLASLEKTGETLLTLKNLTNI 392
Query: 292 DLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQV 338
D+S N + ++P +K++YLNL + H V LE L V
Sbjct: 393 DISKNSFH-SMPETCQWPEKMKYLNLSSTRIHSVTGCIPKTLEILDV 438
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 214 SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGD-LIALKNVSLASN 272
+NLT++ +GNQL+ L NL+ L L N L +P + D L L ++LA N
Sbjct: 85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHN 143
Query: 273 SLSGSVPESM-ASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGV 325
L S+P+ + LT++ LDLS NQL F L +L+ L L N V
Sbjct: 144 QLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Query: 214 SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGD-LIALKNVSLASN 272
+NL + NQL+ L NL +LNL+ N L +P + D L L + L+ N
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYN 167
Query: 273 SLSGSVPESM-ASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLP 327
L S+PE + LT + L L NQL F L L+Y+ L +N + P
Sbjct: 168 QLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 234 ITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESM-ASLTDMVHLD 292
I L N+++L L N L+ S++ +L L + L N L S+P + LT++ L
Sbjct: 59 IQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELV 115
Query: 293 LSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGV 325
L NQL F L L YLNL +N +
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSL 148
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 3/114 (2%)
Query: 230 IPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMV 289
IP+ +T E ++ L+LS+N + S + + L+ + L SN ++ +S +SL +
Sbjct: 46 IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103
Query: 290 HLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNA-SILEKLQVFKVG 342
HLDLS N L+ +F L L +LNL N + + + S L KLQ+ +VG
Sbjct: 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG 157
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 4/116 (3%)
Query: 214 SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGD-LIALKNVSLASN 272
++LT + GN+L+ L +L +LNLS+N L +P+ + D L LK ++L +N
Sbjct: 52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTN 110
Query: 273 SLSGSVPESM-ASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLP 327
L S+P+ + LT + L L NQL F L L+Y+ L +N + P
Sbjct: 111 QLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 7/166 (4%)
Query: 182 SGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQ 241
S +Y I NM+ +++ T+S + + S H+DFS N L + + L L+
Sbjct: 293 SYIYEIFSNMN-IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELE 351
Query: 242 HLNLSSNGLN--GEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTD-MVHLDLSSNQL 298
L L N L +I + +L+ + ++ NS+S + S T ++ L++SSN L
Sbjct: 352 TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411
Query: 299 NGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGN 344
TI R +++ L+L +N + P LE LQ V N
Sbjct: 412 TDTIFRCLP--PRIKVLDLHSNKIKSI-PKQVVKLEALQELNVASN 454
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 194 LRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGE 253
L S+ +S+ +T I + L + +D N++K IP + LE LQ LN++SN L
Sbjct: 401 LLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKS- 458
Query: 254 IPSSIGD-LIALKNVSLASNSLSGSVPE 280
+P I D L +L+ + L +N S P
Sbjct: 459 VPDGIFDRLTSLQKIWLHTNPWDCSCPR 486
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 9/159 (5%)
Query: 169 LTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKG 228
LTD N + + L +I M++L+ ++ A +T + +++ S ++ KG
Sbjct: 336 LTDTVFENCG-HLTELETLILQMNQLKELS-KIAEMTTQMKSLQQLDISQNSVSYDEKKG 393
Query: 229 KIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDM 288
+ +LL LN+SSN L I + I K + L SN + S+P+ + L +
Sbjct: 394 DCSWTKSLLS----LNMSSNILTDTIFRCLPPRI--KVLDLHSNKIK-SIPKQVVKLEAL 446
Query: 289 VHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLP 327
L+++SNQL F L L+ + L N + P
Sbjct: 447 QELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 214 SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGD-LIALKNVSLASN 272
+NLT++ +GNQL+ L NL+ L L N L +P + D L L + L N
Sbjct: 85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLYLYHN 143
Query: 273 SLSGSVPESM-ASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGV 325
L S+P+ + LT++ LDL +NQL F L +L+ L+L +N V
Sbjct: 144 QLQ-SLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSV 196
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 19/156 (12%)
Query: 187 IIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLS 246
II N ++SV Y+P N+ ++ GN+L +++ L NL +L L+
Sbjct: 46 IIANNSDIKSV-----QGIQYLP-----NVRYLALGGNKLHDI--SALKELTNLTYLILT 93
Query: 247 SNGLNGEIPSSIGD-LIALKNVSLASNSLSGSVPESM-ASLTDMVHLDLSSNQLNGTIPR 304
N L +P+ + D L LK + L N L S+P+ + LT++ +L L NQL
Sbjct: 94 GNQLQS-LPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLYLYHNQLQSLPKG 151
Query: 305 FFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFK 340
F L L L+L NN LP + +KL K
Sbjct: 152 VFDKLTNLTRLDLDNNQLQS-LP--EGVFDKLTQLK 184
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 214 SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGD-LIALKNVSLASN 272
+NL + NQL+ L NL +L L N L +P + D L L + L +N
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQS-LPKGVFDKLTNLTRLDLDNN 167
Query: 273 SLSGSVPESM-ASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNN 320
L S+PE + LT + L L+ NQL F L L ++ L NN
Sbjct: 168 QLQ-SLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Query: 214 SNLTHVDFSGNQLKGKIPTSITL-LENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASN 272
L H+DF + LK S+ L L NL +L++S L +L+ + +A N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455
Query: 273 SLSGS-VPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGV 325
S + +P+ L ++ LDLS QL P F+ L L+ LN+ +N V
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 7/124 (5%)
Query: 161 VFLS-RFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHS--NLT 217
VFLS R + D++ T+ V +G++ + ++ L+ N+ ++P NLT
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA--GNSFQENFLPDIFTELRNLT 473
Query: 218 HVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGD-LIALKNVSLASNSLSG 276
+D S QL+ PT+ L +LQ LN++SN L +P I D L +L+ + L +N
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC 532
Query: 277 SVPE 280
S P
Sbjct: 533 SCPR 536
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 214 SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNS 273
S+L+ + +GN ++ + + L +LQ L L IG L LK +++A N
Sbjct: 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135
Query: 274 L-SGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKL 312
+ S +PE ++LT++ HLDLSSN++ + +DL+ L
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSI---YCTDLRVL 172
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 214 SNLTHVDFSGNQLKGK-IPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASN 272
S+L + +GN + +P T L NL L+LS L P++ L +L+ +++ASN
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504
Query: 273 SLSGSVPESMAS-LTDMVHLDLSSNQLNGTIPR 304
L SVP+ + LT + + L +N + + PR
Sbjct: 505 QLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 53/130 (40%), Gaps = 1/130 (0%)
Query: 216 LTHVDFSGN-QLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSL 274
L +D S N QL+ P + L L L+L GL P L AL+ + L N+L
Sbjct: 81 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 140
Query: 275 SGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILE 334
++ L ++ HL L N+++ R F L L L L N V P L
Sbjct: 141 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 200
Query: 335 KLQVFKVGGN 344
+L + N
Sbjct: 201 RLMTLYLFAN 210
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 65/155 (41%), Gaps = 10/155 (6%)
Query: 200 SNANVTGYIPKHLHS----NLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIP 255
NA + P H + H+D G Q G P L LQ+L L N L
Sbjct: 88 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG--PGLFRGLAALQYLYLQDNALQALPD 145
Query: 256 SSIGDLIALKNVSLASNSLSGSVPE-SMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRY 314
+ DL L ++ L N +S SVPE + L + L L N++ P F DL +L
Sbjct: 146 DTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 204
Query: 315 LNLQNNNFHGVLPFNA-SILEKLQVFKVGGNTNLC 348
L L NN LP A + L LQ ++ N +C
Sbjct: 205 LYLFANNL-SALPTEALAPLRALQYLRLNDNPWVC 238
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 53/130 (40%), Gaps = 1/130 (0%)
Query: 216 LTHVDFSGN-QLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSL 274
L +D S N QL+ P + L L L+L GL P L AL+ + L N+L
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 275 SGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILE 334
++ L ++ HL L N+++ R F L L L L N V P L
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201
Query: 335 KLQVFKVGGN 344
+L + N
Sbjct: 202 RLMTLYLFAN 211
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 65/155 (41%), Gaps = 10/155 (6%)
Query: 200 SNANVTGYIPKHLHS----NLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIP 255
NA + P H + H+D G Q G P L LQ+L L N L
Sbjct: 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG--PGLFRGLAALQYLYLQDNALQALPD 146
Query: 256 SSIGDLIALKNVSLASNSLSGSVPE-SMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRY 314
+ DL L ++ L N +S SVPE + L + L L N++ P F DL +L
Sbjct: 147 DTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205
Query: 315 LNLQNNNFHGVLPFNA-SILEKLQVFKVGGNTNLC 348
L L NN LP A + L LQ ++ N +C
Sbjct: 206 LYLFANNL-SALPTEALAPLRALQYLRLNDNPWVC 239
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 5/120 (4%)
Query: 213 HSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSI-GDL--IALKNVSL 269
+S+L +D S N LK P + L L L++ LN + + +L +++N+SL
Sbjct: 170 NSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSL 229
Query: 270 ASNSLSGSVPESMASL--TDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLP 327
A+N L + + + L T++ LDLS N L+ FS L LRYL+L+ NN + P
Sbjct: 230 ANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSP 289
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 56/114 (49%)
Query: 207 YIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKN 266
+IP L SN+T ++ + NQL+ PT+ T L L+ N ++ P L LK
Sbjct: 18 HIPDDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKV 77
Query: 267 VSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNN 320
++L N LS ++ T++ LDL SN ++ F + K L L+L +N
Sbjct: 78 LNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHN 131
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 19/155 (12%)
Query: 183 GLYVIIGNMHKLRSVTISNANVTGYIPKHL-----HSNLTHVDFSGNQLKGKIPTSITLL 237
G + IG KL ++ ++NA + ++ + L ++++ ++ + NQL ++ + L
Sbjct: 189 GCFQTIG---KLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGL 245
Query: 238 E--NLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSS 295
+ NL L+LS N L+ S L +L+ +SL N++ P S L+++ +L L
Sbjct: 246 KWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKR 305
Query: 296 NQLNGTI-----PRF----FSDLKKLRYLNLQNNN 321
++ P F LK L YLN+ +NN
Sbjct: 306 AFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNN 340
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 6/129 (4%)
Query: 188 IGNMHKLRSVTISNANVTGYIPKHLHS--NLTHVDFSGNQLKGKIPTSITLLENLQHLNL 245
N +L+ + +S + K H +L+++ +GN ++ P S + L +L++L
Sbjct: 52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111
Query: 246 SSNGLNGEIPSSIGDLIALKNVSLASNSL-SGSVPESMASLTDMVHLDLSSNQLNGTIPR 304
L IG LI LK +++A N + S +P ++LT++VH+DLS N + TI
Sbjct: 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ-TIT- 169
Query: 305 FFSDLKKLR 313
+DL+ LR
Sbjct: 170 -VNDLQFLR 177
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 8/125 (6%)
Query: 199 ISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITL-LENLQHLNLSSNGLNGEIPSS 257
I +AN G L H+DF + LK S L LE L +L++S +
Sbjct: 390 IMSANFMGL------EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443
Query: 258 IGDLIALKNVSLASNSL-SGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLN 316
L +L + +A NS ++ A+ T++ LDLS QL F L +L+ LN
Sbjct: 444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503
Query: 317 LQNNN 321
+ +NN
Sbjct: 504 MSHNN 508
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 9/82 (10%)
Query: 260 DLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDL--KKLRYLNL 317
DL LK+++L N GS+ +L + +LDLS N L+ + +SDL LR+L+L
Sbjct: 326 DLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383
Query: 318 QNNNFHGVLPFNASI--LEKLQ 337
+F+G + +A+ LE+LQ
Sbjct: 384 ---SFNGAIIMSANFMGLEELQ 402
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 67/129 (51%), Gaps = 6/129 (4%)
Query: 188 IGNMHKLRSVTISNANVTGYIPKHLHS--NLTHVDFSGNQLKGKIPTSITLLENLQHLNL 245
N +L+ + +S + K H +L+++ +GN ++ P S + L +L++L
Sbjct: 47 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 106
Query: 246 SSNGLNGEIPSSIGDLIALKNVSLASNSL-SGSVPESMASLTDMVHLDLSSNQLNGTIPR 304
L IG LI LK +++A N + S +P ++LT++VH+DLS N + TI
Sbjct: 107 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ-TIT- 164
Query: 305 FFSDLKKLR 313
+DL+ LR
Sbjct: 165 -VNDLQFLR 172
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 8/125 (6%)
Query: 199 ISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITL-LENLQHLNLSSNGLNGEIPSS 257
I +AN G L H+DF + LK S L LE L +L++S +
Sbjct: 385 IMSANFMGL------EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 438
Query: 258 IGDLIALKNVSLASNSL-SGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLN 316
L +L + +A NS ++ A+ T++ LDLS QL F L +L+ LN
Sbjct: 439 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 498
Query: 317 LQNNN 321
+ +NN
Sbjct: 499 MSHNN 503
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 9/82 (10%)
Query: 260 DLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDL--KKLRYLNL 317
DL LK+++L N GS+ +L + +LDLS N L+ + +SDL LR+L+L
Sbjct: 321 DLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 378
Query: 318 QNNNFHGVLPFNASI--LEKLQ 337
+F+G + +A+ LE+LQ
Sbjct: 379 ---SFNGAIIMSANFMGLEELQ 397
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 81/193 (41%), Gaps = 23/193 (11%)
Query: 158 LSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLT 217
L+G+ + F LT L ++ NA +LR V + G HLH+
Sbjct: 67 LAGIDAAAFTGLTLLEQLDLSDNA-----------QLRVVDPTTFRGLG----HLHT--L 109
Query: 218 HVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGS 277
H+D G Q G P L LQ+L L N L ++ DL L ++ L N + S
Sbjct: 110 HLDRCGLQELG--PGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIP-S 166
Query: 278 VPE-SMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASI-LEK 335
VPE + L + L L N + P F DL +L L L NN +LP + L
Sbjct: 167 VPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL-SMLPAEVLVPLRS 225
Query: 336 LQVFKVGGNTNLC 348
LQ ++ N +C
Sbjct: 226 LQYLRLNDNPWVC 238
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 67/166 (40%), Gaps = 6/166 (3%)
Query: 185 YVIIGNMHKLRSVTIS--NANVTGYIPKHLHSNLT---HVDFSGN-QLKGKIPTSITLLE 238
YV + R++TI ++N I + LT +D S N QL+ PT+ L
Sbjct: 45 YVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLG 104
Query: 239 NLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQL 298
+L L+L GL P L AL+ + L N+L + L ++ HL L N++
Sbjct: 105 HLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI 164
Query: 299 NGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGN 344
F L L L L N+ V P L +L + N
Sbjct: 165 PSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFAN 210
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 15/161 (9%)
Query: 167 VNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSN---LTHVDFSG 223
+ L D +T VP A + KLR + + N N IP + + L +D
Sbjct: 88 LELFDNRLTTVPTQA------FEYLSKLRELWLRN-NPIESIPSYAFNRVPSLRRLDLGE 140
Query: 224 -NQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESM 282
+L+ + L NL++LNL L +IP+ + L+ L+ + L+ N L P S
Sbjct: 141 LKRLEYISEAAFEGLVNLRYLNLGMCNLK-DIPN-LTALVRLEELELSGNRLDLIRPGSF 198
Query: 283 ASLTDMVHLDLSSNQLNGTIPR-FFSDLKKLRYLNLQNNNF 322
LT + L L Q+ TI R F DLK L LNL +NN
Sbjct: 199 QGLTSLRKLWLMHAQV-ATIERNAFDDLKSLEELNLSHNNL 238
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 228 GKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTD 287
++P SI + N ++LNL N + + L L+ + L+ N + + L
Sbjct: 27 AEVPASIPV--NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPS 84
Query: 288 MVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNL 347
+ L+L N+L + F L KLR L L+NN + + + + L+ +G L
Sbjct: 85 LNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRL 144
Query: 348 CY 349
Y
Sbjct: 145 EY 146
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 53/115 (46%)
Query: 208 IPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNV 267
+P+ + + +D N++K +L+ L L+ N ++ P + +L L+ +
Sbjct: 26 VPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTL 85
Query: 268 SLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNF 322
L SN L L+++ LD+S N++ + F DL L+ L + +N+
Sbjct: 86 GLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 11/170 (6%)
Query: 153 HSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNA-NVTGYIPKH 211
+L HL G+ + R +L +NA Y +++L+ + IS+ + P
Sbjct: 170 EALSHLHGLIVLRLRHLN--------INAIRDYSF-KRLYRLKVLEISHWPYLDTMTPNC 220
Query: 212 LHS-NLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLA 270
L+ NLT + + L ++ L L+ LNLS N ++ S + +L+ L+ + L
Sbjct: 221 LYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLV 280
Query: 271 SNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNN 320
L+ P + L + L++S NQL F + L L L +N
Sbjct: 281 GGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 48/104 (46%)
Query: 214 SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNS 273
SNLT +D S N++ + L NL+ L + N L + L +L+ ++L +
Sbjct: 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN 163
Query: 274 LSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNL 317
L+ E+++ L ++ L L +N F L +L+ L +
Sbjct: 164 LTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 215 NLTH--VDFSGNQLKGKIPTSITLLENLQHLNLSSNGL---NGEIPSSIGDLIALKNVSL 269
NL+H +D S QL +P LQHLNL N N + +S+ L L+ + L
Sbjct: 431 NLSHSLLDISSEQLFDGLPA-------LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483
Query: 270 ASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFN 329
+ LS + SL M H+DLS N+L + S LK + YLNL +N+ +LP
Sbjct: 484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL 542
Query: 330 ASILEKLQVFKVGGN 344
IL + + + N
Sbjct: 543 LPILSQQRTINLRQN 557
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 74/161 (45%), Gaps = 15/161 (9%)
Query: 167 VNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHS---NLTHVDFSG 223
+ L D +T VP A + KLR + + N N IP + + +L +D
Sbjct: 88 LELFDNRLTTVPTQA------FEYLSKLRELWLRN-NPIESIPSYAFNRVPSLRRLDLGE 140
Query: 224 -NQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESM 282
+L+ + L NL++LNL L +IP+ + L+ L+ + L+ N L P S
Sbjct: 141 LKRLEYISEAAFEGLVNLRYLNLGMCNLK-DIPN-LTALVRLEELELSGNRLDLIRPGSF 198
Query: 283 ASLTDMVHLDLSSNQLNGTIPR-FFSDLKKLRYLNLQNNNF 322
LT + L L Q+ TI R F DLK L LNL +NN
Sbjct: 199 QGLTSLRKLWLMHAQV-ATIERNAFDDLKSLEELNLSHNNL 238
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 2/122 (1%)
Query: 228 GKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTD 287
++P SI + N ++LNL N + + L L+ + L+ N + + L
Sbjct: 27 AEVPASIPV--NTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPS 84
Query: 288 MVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNL 347
+ L+L N+L + F L KLR L L+NN + + + + L+ +G L
Sbjct: 85 LNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRL 144
Query: 348 CY 349
Y
Sbjct: 145 EY 146
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 240 LQHLNLSSN---GLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSN 296
++HL+LS LN + ++ DL K ++LA N ++ E+ L ++ L+LS N
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDL---KVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324
Query: 297 QLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNT 345
L F L K+ Y++LQ N+ + LEKLQ + N
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 11/124 (8%)
Query: 188 IGNMHKLRSVTISNANVTGYIPKHL---HSNLTHVDFSGNQLKGKIPTSI-TLLENLQHL 243
+ +H L+ + +T +IP +L NL+H++ N ++P+ + LENL+ +
Sbjct: 119 LDRLHGLKRFRFTTRRLT-HIPANLLTDMRNLSHLELRAN--IEEMPSHLFDDLENLESI 175
Query: 244 NLSSNGLNGEIPSSI-GDLIALKNVSLASNSLSGSVPESM-ASLTDMVHLDLSSNQLNGT 301
SN L ++P I G + LK ++LASN L SVP+ + LT + + L +N + +
Sbjct: 176 EFGSNKLR-QMPRGIFGKMPKLKQLNLASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS 233
Query: 302 IPRF 305
PR
Sbjct: 234 CPRI 237
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 215 NLTHVDFSGNQLKGKIPTSI-TLLENLQHLNLSSNGLNGEIPSSIGD-LIALKNVSLASN 272
NL + NQL G +P + L L L+L +N L +PS++ D L+ LK + + N
Sbjct: 65 NLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCN 122
Query: 273 SLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNF 322
L+ +P + LT + HL L NQL F L L + L N +
Sbjct: 123 KLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 239 NLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESM-ASLTDMVHLDLSSNQ 297
N Q L L N + P LI LK + L SN L G++P + SLT + LDL +NQ
Sbjct: 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ 99
Query: 298 LNGTIPRFFSDLKKLRYLNLQNNNF 322
L F L L+ L + N
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKL 124
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 6/133 (4%)
Query: 156 HHLSGVFLSRFVNLTDLTVTNV---PVNASGLY-VIIGNMHKLRSVTISNANVTGYIPKH 211
+ ++ V S F L + V + P+ +SG+ M KL + I++ N+T IP+
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG 189
Query: 212 LHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLAS 271
L +LT + GN++ S+ L NL L LS N ++ S+ + L+ + L +
Sbjct: 190 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249
Query: 272 NSLSGSVPESMAS 284
N L VP +A
Sbjct: 250 NKLV-KVPGGLAD 261
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 259 GDLIALKNVS---LASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYL 315
GDL A N+ L S+ ++ ++ SL + HLDLS N L+ +F L L+YL
Sbjct: 70 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 129
Query: 316 NLQNNNFH--GVLPFNASILEKLQVFKVG 342
NL N + GV + L LQ ++G
Sbjct: 130 NLMGNPYQTLGVTSLFPN-LTNLQTLRIG 157
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 214 SNLTHVDFSGNQLKGKIPTSITL-LENLQHLNLSSNGLNGEIPS-SIGDLIALKNVSLAS 271
S+L +++ GN + TS+ L NLQ L + + EI L +L + + +
Sbjct: 124 SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 183
Query: 272 NSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNF 322
SL +S+ S+ D+ HL L ++ + F L +RYL L++ N
Sbjct: 184 LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 234
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 6/89 (6%)
Query: 259 GDLIALKNVS---LASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYL 315
GDL A N+ L S+ ++ ++ SL + HLDLS N L+ +F L L+YL
Sbjct: 44 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103
Query: 316 NLQNNNFH--GVLPFNASILEKLQVFKVG 342
NL N + GV + L LQ ++G
Sbjct: 104 NLMGNPYQTLGVTSLFPN-LTNLQTLRIG 131
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 214 SNLTHVDFSGNQLKGKIPTSITL-LENLQHLNLSSNGLNGEIPS-SIGDLIALKNVSLAS 271
S+L +++ GN + TS+ L NLQ L + + EI L +L + + +
Sbjct: 98 SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157
Query: 272 NSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNF 322
SL +S+ S+ D+ HL L ++ + F L +RYL L++ N
Sbjct: 158 LSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNL 208
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 214 SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNS 273
S+L+ + +GN ++ + + L +LQ L L IG L LK +++A N
Sbjct: 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135
Query: 274 L-SGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKL 312
+ S +PE ++LT++ HLDLSSN++ + +DL+ L
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSI---YCTDLRVL 172
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 25/170 (14%)
Query: 143 SLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNA 202
SL+L +FS + SL L V NL L N P IG++ L+ + +++
Sbjct: 90 SLALGAFSGLSSLQKLVAVE----TNLASLE--NFP---------IGHLKTLKELNVAHN 134
Query: 203 NVTGY-IPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENL----QHLNLSSNGLNGEIP 255
+ + +P++ +NL H+D S N+++ T + +L + L+LS N +N P
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194
Query: 256 SSIGDLIALKNVSLASNSLSGSVPESM-ASLTDMVHLDLSSNQLNGTIPR 304
+ + I LK ++L +N L SVP+ + LT + + L +N + + PR
Sbjct: 195 GAFKE-IRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 6/133 (4%)
Query: 156 HHLSGVFLSRFVNLTDLTVTNV---PVNASGLY-VIIGNMHKLRSVTISNANVTGYIPKH 211
+ ++ V S F L + V + P+ +SG+ M KL + I++ N+T IP+
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG 189
Query: 212 LHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLAS 271
L +LT + GN++ S+ L NL L LS N ++ S+ + L+ + L +
Sbjct: 190 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 249
Query: 272 NSLSGSVPESMAS 284
N L VP +A
Sbjct: 250 NKLV-KVPGGLAD 261
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 214 SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNS 273
S+L+ + +GN ++ + + L +LQ L L IG L LK +++A N
Sbjct: 77 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 136
Query: 274 L-SGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKL 312
+ S +PE ++LT++ HLDLSSN++ + +DL+ L
Sbjct: 137 IQSFKLPEYFSNLTNLEHLDLSSNKIQSI---YCTDLRVL 173
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 25/170 (14%)
Query: 143 SLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNA 202
SL+L +FS + SL L V NL L N P IG++ L+ + +++
Sbjct: 91 SLALGAFSGLSSLQKLVAVE----TNLASLE--NFP---------IGHLKTLKELNVAHN 135
Query: 203 NVTGY-IPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENL----QHLNLSSNGLNGEIP 255
+ + +P++ +NL H+D S N+++ T + +L + L+LS N +N P
Sbjct: 136 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 195
Query: 256 SSIGDLIALKNVSLASNSLSGSVPESM-ASLTDMVHLDLSSNQLNGTIPR 304
+ + I LK ++L +N L SVP+ + LT + + L +N + + PR
Sbjct: 196 GAFKE-IRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 243
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 214 SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNS 273
S+L+ + +GN ++ + + L +LQ L L IG L LK +++A N
Sbjct: 77 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 136
Query: 274 L-SGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKL 312
+ S +PE ++LT++ HLDLSSN++ + +DL+ L
Sbjct: 137 IQSFKLPEYFSNLTNLEHLDLSSNKIQSI---YCTDLRVL 173
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 25/170 (14%)
Query: 143 SLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNA 202
SL+L +FS + SL L V NL L N P IG++ L+ + +++
Sbjct: 91 SLALGAFSGLSSLQKLVAVE----TNLASLE--NFP---------IGHLKTLKELNVAHN 135
Query: 203 NVTGY-IPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENL----QHLNLSSNGLNGEIP 255
+ + +P++ +NL H+D S N+++ T + +L + L+LS N +N P
Sbjct: 136 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 195
Query: 256 SSIGDLIALKNVSLASNSLSGSVPESM-ASLTDMVHLDLSSNQLNGTIPR 304
+ + I LK ++L +N L SVP+ + LT + + L +N + + PR
Sbjct: 196 GAFKE-IRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 243
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 214 SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNS 273
S+L+ + +GN ++ + + L +LQ L L IG L LK +++A N
Sbjct: 78 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 137
Query: 274 L-SGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKL 312
+ S +PE ++LT++ HLDLSSN++ + +DL+ L
Sbjct: 138 IQSFKLPEYFSNLTNLEHLDLSSNKIQSI---YCTDLRVL 174
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 84/170 (49%), Gaps = 25/170 (14%)
Query: 143 SLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNA 202
SL+L +FS + SL L V NL L N P IG++ L+ + +++
Sbjct: 92 SLALGAFSGLSSLQKLVAVE----TNLASLE--NFP---------IGHLKTLKELNVAHN 136
Query: 203 NVTGY-IPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENL----QHLNLSSNGLNGEIP 255
+ + +P++ +NL H+D S N+++ T + +L + L+LS N +N P
Sbjct: 137 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 196
Query: 256 SSIGDLIALKNVSLASNSLSGSVPESM-ASLTDMVHLDLSSNQLNGTIPR 304
+ + I LK ++L +N L SVP+ + LT + + L +N + + PR
Sbjct: 197 GAFKE-IRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 244
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 214 SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNS 273
S+L+ + +GN ++ + + L +LQ L L IG L LK +++A N
Sbjct: 78 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNL 137
Query: 274 L-SGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKL 312
+ S +PE ++LT++ HLDLSSN++ + +DL+ L
Sbjct: 138 IQSFKLPEYFSNLTNLEHLDLSSNKIQSI---YCTDLRVL 174
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 84/170 (49%), Gaps = 25/170 (14%)
Query: 143 SLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNA 202
SL+L +FS + SL L + NL L N P IG++ L+ + +++
Sbjct: 92 SLALGAFSGLSSLQKLVALE----TNLASLE--NFP---------IGHLKTLKELNVAHN 136
Query: 203 NVTGY-IPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENL----QHLNLSSNGLNGEIP 255
+ + +P++ +NL H+D S N+++ T + +L + L+LS N +N P
Sbjct: 137 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 196
Query: 256 SSIGDLIALKNVSLASNSLSGSVPESM-ASLTDMVHLDLSSNQLNGTIPR 304
+ + I LK ++L +N L SVP+ + LT + + L +N + + PR
Sbjct: 197 GAFKE-IRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 244
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 18/164 (10%)
Query: 167 VNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTI-------SNANVTGYIPKHLHSNLTHV 219
+ L DL T + +NA N+H L+ + + SN ++ +P L H+
Sbjct: 399 LELLDLAFTRLHINAP--QSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPV-----LRHL 451
Query: 220 DFSGNQLKGKIPTSITLLE---NLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSG 276
+ GN + T LL+ +L+ L LSS GL + L + +V L+ NSL+
Sbjct: 452 NLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTC 511
Query: 277 SVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNN 320
+S++ L ++L+L++N +N PR L + +NL +N
Sbjct: 512 DSIDSLSHLKG-IYLNLAANSINIISPRLLPILSQQSTINLSHN 554
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 215 NLTHVDFSGNQLKGKIPTSITL--LENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASN 272
NL +D S N ++ S+ L L +LQ LNLS N G + + L+ + LA
Sbjct: 348 NLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFT 407
Query: 273 SLSGSVPES-MASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFH 323
L + P+S +L + L+L+ L+ + + L LR+LNL+ N+F
Sbjct: 408 RLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQ 459
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 237 LENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSN 296
L NL++LNL+ L EIP+ + LI L + L+ N LS P S L + L + +
Sbjct: 184 LSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241
Query: 297 QLNGTIPRFFSDLKKLRYLNLQNNNF 322
Q+ F +L+ L +NL +NN
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNL 267
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 241 QHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNG 300
Q L L++N + P L+ L+ + SN L+ LT + LDL+ N L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK- 94
Query: 301 TIPR-FFSDLKKLRYLNLQNNNF 322
+IPR F +LK L ++ L NN +
Sbjct: 95 SIPRGAFDNLKSLTHIYLYNNPW 117
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 214 SNLTHVDFSGNQLKG-KIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASN 272
S+L +D S N L + E++ LNLSSN L G + + +K + L +N
Sbjct: 403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNN 460
Query: 273 SLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLP 327
+ S+P+ + L + L+++SNQL F L L+Y+ L +N + P
Sbjct: 461 RI-MSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 80/197 (40%), Gaps = 42/197 (21%)
Query: 164 SRFVNLTDLTVTNVPVN-----ASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTH 218
+ F LT LT N+ N ++G++ ++ +L ++ ++N N +P + +LT
Sbjct: 53 ATFRGLTKLTWLNLDYNQLQTLSAGVF---DDLTELGTLGLAN-NQLASLPLGVFDHLTQ 108
Query: 219 VD---FSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGD-LIALKNVSLASNSL 274
+D GNQLK +PS + D L LK + L +N L
Sbjct: 109 LDKLYLGGNQLK-------------------------SLPSGVFDRLTKLKELRLNTNQL 143
Query: 275 SGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFH----GVLPFNA 330
+ LT++ L LS+NQL F L KL+ + L N F +L +
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQ 203
Query: 331 SILEKLQVFKVGGNTNL 347
I E K G NL
Sbjct: 204 WIRENSNKVKDGTGQNL 220
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 66/160 (41%), Gaps = 10/160 (6%)
Query: 197 VTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPS 256
T+S+A G + LT ++ NQL+ L L L L++N L +P
Sbjct: 48 ATLSDATFRGL------TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPL 100
Query: 257 SIGD-LIALKNVSLASNSLSGSVPESM-ASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRY 314
+ D L L + L N L S+P + LT + L L++NQL F L L+
Sbjct: 101 GVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159
Query: 315 LNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNHTVL 354
L+L N V L KLQ + GN C +L
Sbjct: 160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEIL 199
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 52/138 (37%), Gaps = 2/138 (1%)
Query: 208 IPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNV 267
+P + ++ +D L + L L LNL N L DL L +
Sbjct: 29 VPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL 88
Query: 268 SLASNSLSGSVPESMAS-LTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVL 326
LA+N L+ S+P + LT + L L NQL F L KL+ L L N +
Sbjct: 89 GLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147
Query: 327 PFNASILEKLQVFKVGGN 344
L LQ + N
Sbjct: 148 AGAFDKLTNLQTLSLSTN 165
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 71/168 (42%), Gaps = 38/168 (22%)
Query: 164 SRFVNLTDLTVTNVPVN-----ASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTH 218
+ F LT LT N+ N ++G++ ++ +L ++ ++N N +P + +LT
Sbjct: 53 ATFRGLTKLTWLNLDYNQLQTLSAGVF---DDLTELGTLGLAN-NQLASLPLGVFDHLTQ 108
Query: 219 VD---FSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGD-LIALKNVSLASNSL 274
+D GNQLK +PS + D L LK + L +N L
Sbjct: 109 LDKLYLGGNQLK-------------------------SLPSGVFDRLTKLKELRLNTNQL 143
Query: 275 SGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNF 322
+ LT++ L LS+NQL F L KL+ + L N F
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 52/138 (37%), Gaps = 2/138 (1%)
Query: 208 IPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNV 267
+P + ++ +D L + L L LNL N L DL L +
Sbjct: 29 VPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL 88
Query: 268 SLASNSLSGSVPESMAS-LTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVL 326
LA+N L+ S+P + LT + L L NQL F L KL+ L L N +
Sbjct: 89 GLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147
Query: 327 PFNASILEKLQVFKVGGN 344
L LQ + N
Sbjct: 148 AGAFDKLTNLQTLSLSTN 165
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 64/154 (41%), Gaps = 10/154 (6%)
Query: 197 VTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPS 256
T+S+A G + LT ++ NQL+ L L L L++N L +P
Sbjct: 48 ATLSDATFRGL------TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPL 100
Query: 257 SIGD-LIALKNVSLASNSLSGSVPESM-ASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRY 314
+ D L L + L N L S+P + LT + L L++NQL F L L+
Sbjct: 101 GVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159
Query: 315 LNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLC 348
L+L N V L KLQ + GN C
Sbjct: 160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 237 LENLQHLNLSSNGL-NGEIPSS--IGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDL 293
L++L+HLNL N +G I + + + +L+ + L+S +L ++ L ++ HLDL
Sbjct: 447 LQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDL 506
Query: 294 SSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLP 327
S N L G S LK L YLN+ +NN + P
Sbjct: 507 SHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPP 539
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 5/138 (3%)
Query: 213 HSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASN 272
H L + +GN L TS+T + L+HL L+ G++ + +L L+++ L SN
Sbjct: 79 HHQLNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGISNLEFIPVHNLENLESLHLGSN 138
Query: 273 SLSG-SVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLR--YLNLQNNNFHGVLPFN 329
+S ++PE+ + ++ LD +N ++ + + L++ LN N+ G+ P
Sbjct: 139 HISSINLPENFPT-QNLKVLDFQNNAIHYISRKDTNSLEQATNLSLNFNGNDIKGIEP-G 196
Query: 330 ASILEKLQVFKVGGNTNL 347
A I + Q K GG+ NL
Sbjct: 197 AFISKIFQSLKFGGSLNL 214
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 214 SNLTHVDFSGNQLKGKIPTSITL--LENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLAS 271
NL +D S + ++ ++ L L +LQ+LNLS N G + + L+ + +A
Sbjct: 349 ENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELLDVAF 408
Query: 272 NSLSGSVPES-MASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFH 323
L P S +L + L+LS L+ + + L+ LR+LNLQ N+F
Sbjct: 409 THLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQ 461
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 262 IALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNN 321
+++++++L + S + T + LDL++ LNG +P + L+ L L N+
Sbjct: 253 MSVESINLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANS 311
Query: 322 FHGVLPFNASILEKLQVFKVGGN 344
F + NA+ L+ + GN
Sbjct: 312 FDQLCQINAASFPSLRDLYIKGN 334
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 233 SITLLENLQHLNLSSNGLNGE-IPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHL 291
S T L +L H NLS L E P+ + +L +L L+ N L+ E+ + ++ +L
Sbjct: 39 SYTALLDLSHNNLSR--LRAEWTPTRLTNLHSLL---LSHNHLNFISSEAFVPVPNLRYL 93
Query: 292 DLSSNQLNGTIPRFFSDLKKLRYLNLQNN 320
DLSSN L+ FSDL+ L L L NN
Sbjct: 94 DLSSNHLHTLDEFLFSDLQALEVLLLYNN 122
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%)
Query: 208 IPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNV 267
+P L +N+T ++ + NQL+ + T L L++ N ++ P L LK +
Sbjct: 19 VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVL 78
Query: 268 SLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNN 320
+L N LS ++ A T++ L L SN + F K L L+L +N
Sbjct: 79 NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 22/182 (12%)
Query: 151 CIHSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPK 210
C H++ L G+FL+ V P L + + N +R++++SN+ ++
Sbjct: 190 CFHAIGRLFGLFLN--------NVQLGPSLTEKLCLELANT-SIRNLSLSNSQLSTTSNT 240
Query: 211 HL----HSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKN 266
+NLT +D S N L S L L++ L N + S+ L ++
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300
Query: 267 V----SLASNSLS-GSVPE----SMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNL 317
+ S S+S S+P+ S L + HL++ N + G F+ L L+YL+L
Sbjct: 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360
Query: 318 QN 319
N
Sbjct: 361 SN 362
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 213 HSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIA---LKNVSL 269
+S+L ++ S NQ+K P + L L L++ L + + +A ++N+SL
Sbjct: 170 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229
Query: 270 ASNSLSGSVPESMASL--TDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFH 323
+++ LS + + L T++ LDLS N LN F+ L +L Y L+ NN
Sbjct: 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 285
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%)
Query: 208 IPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNV 267
+P L +N+T ++ + NQL+ + T L L++ N ++ P L LK +
Sbjct: 29 VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVL 88
Query: 268 SLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNN 320
+L N LS ++ A T++ L L SN + F K L L+L +N
Sbjct: 89 NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 141
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 22/182 (12%)
Query: 151 CIHSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPK 210
C H++ L G+FL+ V P L + + N +R++++SN+ ++
Sbjct: 200 CFHAIGRLFGLFLNN--------VQLGPSLTEKLCLELANT-SIRNLSLSNSQLSTTSNT 250
Query: 211 HL----HSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKN 266
+NLT +D S N L S L L++ L N + S+ L ++
Sbjct: 251 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 310
Query: 267 V----SLASNSLS-GSVPE----SMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNL 317
+ S S+S S+P+ S L + HL++ N + G F+ L L+YL+L
Sbjct: 311 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 370
Query: 318 QN 319
N
Sbjct: 371 SN 372
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 213 HSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIA---LKNVSL 269
+S+L ++ S NQ+K P + L L L++ L + + +A ++N+SL
Sbjct: 180 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 239
Query: 270 ASNSLSGSVPESMASL--TDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFH 323
+++ LS + + L T++ LDLS N LN F+ L +L Y L+ NN
Sbjct: 240 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 295
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%)
Query: 208 IPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNV 267
+P L +N+T ++ + NQL+ + T L L++ N ++ P L LK +
Sbjct: 24 VPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVL 83
Query: 268 SLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNN 320
+L N LS ++ A T++ L L SN + F K L L+L +N
Sbjct: 84 NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 136
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 22/182 (12%)
Query: 151 CIHSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPK 210
C H++ L G+FL+ V P L + + N +R++++SN+ ++
Sbjct: 195 CFHAIGRLFGLFLNN--------VQLGPSLTEKLCLELANT-SIRNLSLSNSQLSTTSNT 245
Query: 211 HL----HSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKN 266
+NLT +D S N L S L L++ L N + S+ L ++
Sbjct: 246 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 305
Query: 267 V----SLASNSLS-GSVPE----SMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNL 317
+ S S+S S+P+ S L + HL++ N + G F+ L L+YL+L
Sbjct: 306 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 365
Query: 318 QN 319
N
Sbjct: 366 SN 367
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 213 HSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIA---LKNVSL 269
+S+L ++ S NQ+K P + L L L++ L + + +A ++N+SL
Sbjct: 175 NSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 234
Query: 270 ASNSLSGSVPESMASL--TDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFH 323
+++ LS + + L T++ LDLS N LN F+ L +L Y L+ NN
Sbjct: 235 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQ 290
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%)
Query: 216 LTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLS 275
L ++FS N++ + + + L+SN L L +LK + L SN ++
Sbjct: 59 LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT 118
Query: 276 GSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFH 323
+S L+ + L L NQ+ P F L L LNL N F+
Sbjct: 119 CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%)
Query: 241 QHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNG 300
Q L+L N + P L L ++LA N L+ LT + HL L NQL
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKS 102
Query: 301 TIPRFFSDLKKLRYLNLQNNNF 322
F +LK L ++ L NN +
Sbjct: 103 IPMGVFDNLKSLTHIYLFNNPW 124
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 272 NSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGV 325
N ++ P SLT + +L+L+ NQL F L KL +L L N +
Sbjct: 50 NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSI 103
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 215 NLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSL 274
NL + + Q+ G +P TL +L H L S L G+ L AL + ++ N L
Sbjct: 62 NLDRCELTKLQVDGTLPVLGTL--DLSHNQLQSLPLLGQT------LPALTVLDVSFNRL 113
Query: 275 SGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNF 322
+ ++ L ++ L L N+L P + KL L+L NNN
Sbjct: 114 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 161
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 253 EIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKL 312
EIP+++ + I + L N++ P + + + +DLS+NQ++ P F L+ L
Sbjct: 25 EIPTNLPETIT--EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 313 RYLNLQNN 320
L L N
Sbjct: 83 NSLVLYGN 90
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 253 EIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKL 312
EIP+++ + I + L N++ P + + + +DLS+NQ++ P F L+ L
Sbjct: 25 EIPTNLPETIT--EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSL 82
Query: 313 RYLNLQNN 320
L L N
Sbjct: 83 NSLVLYGN 90
>pdb|3KQ5|A Chain A, Crystal Structure Of An Uncharacterized Protein From
Coxiella Burnetii
Length = 393
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 58/148 (39%), Gaps = 35/148 (23%)
Query: 159 SGVFLSR---FVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSN 215
GVFL + F DL V NVPVN +Y GN+ L +
Sbjct: 276 EGVFLEKTGIFKQYIDLHV-NVPVNLFTVYQQFGNLFGL-------------------TK 315
Query: 216 LTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLS 275
L+ +D+ QL + P ++ + L G+ P+ G LIA N+
Sbjct: 316 LSGIDYRFEQLFSEYPDALKRKSKMGFAGLI--GIRRASPTREGVLIADPNLIFT----R 369
Query: 276 GSVPESMASLTDMVHLDLSSNQLNGTIP 303
G +P + + +L LSS Q + IP
Sbjct: 370 GEIPSATS------YLKLSSAQKSQNIP 391
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 215 NLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSL 274
NL + + Q+ G +P TL +L H L S L G+ L AL + ++ N L
Sbjct: 61 NLDRAELTKLQVDGTLPVLGTL--DLSHNQLQSLPLLGQT------LPALTVLDVSFNRL 112
Query: 275 SGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNF 322
+ ++ L ++ L L N+L P + KL L+L NNN
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 215 NLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSL 274
NL + + Q+ G +P TL +L H L S L G+ L AL + ++ N L
Sbjct: 61 NLDRCELTKLQVDGTLPVLGTL--DLSHNQLQSLPLLGQT------LPALTVLDVSFNRL 112
Query: 275 SGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNF 322
+ ++ L ++ L L N+L P + KL L+L NNN
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 215 NLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSL 274
NL + + Q+ G +P TL +L H L S L G+ L AL + ++ N L
Sbjct: 61 NLDRAELTKLQVDGTLPVLGTL--DLSHNQLQSLPLLGQT------LPALTVLDVSFNRL 112
Query: 275 SGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNF 322
+ ++ L ++ L L N+L P + KL L+L NNN
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 215 NLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSL 274
NL + + Q+ G +P TL +L H L S L G+ L AL + ++ N L
Sbjct: 61 NLDRAELTKLQVDGTLPVLGTL--DLSHNQLQSLPLLGQT------LPALTVLDVSFNRL 112
Query: 275 SGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNF 322
+ ++ L ++ L L N+L P + KL L+L NNN
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 6/141 (4%)
Query: 163 LSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFS 222
L+ NLT +T + N I + ++++ +++ +T P SNL +
Sbjct: 84 LTPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLD 143
Query: 223 GNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESM 282
NQ+ P + L NLQ+L++ +N +N P + +L L + N +S P +
Sbjct: 144 LNQITNISP--LAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKISDISP--L 197
Query: 283 ASLTDMVHLDLSSNQLNGTIP 303
ASL +++ + L NQ++ P
Sbjct: 198 ASLPNLIEVHLKDNQISDVSP 218
>pdb|3ZYG|A Chain A, Netring2 Lam And Egf1 Domains
pdb|3ZYG|B Chain B, Netring2 Lam And Egf1 Domains
pdb|3ZYI|B Chain B, Netring2 In Complex With Ngl2
Length = 353
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 163 LSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNL 216
L F LTDL + + G YV N++K ISN V G +LH+NL
Sbjct: 243 LKEFFTLTDLRMRLLRPALGGTYVQRENLYKY-FYAISNIEVIGRCKCNLHANL 295
>pdb|3TBD|A Chain A, Crystal Structure Of Domain Vi And Le1 Of Human Netrin-G2
Length = 338
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 163 LSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNL 216
L F LTDL + + G YV N++K ISN V G +LH+NL
Sbjct: 226 LKEFFTLTDLRMRLLRPALGGTYVQRENLYKY-FYAISNIEVIGRCKCNLHANL 278
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 17/164 (10%)
Query: 193 KLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNG 252
+LRSV + + HL +D +G ++P + L+ L L+ N L
Sbjct: 87 ELRSVPLPQFPDQAFRLSHLQH--XTIDAAG---LXELPDTXQQFAGLETLTLARNPLRA 141
Query: 253 EIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVH-----LDLSSNQLNGT----IP 303
+P+SI L L+ +S+ + +PE +AS TD ++L S +L T +P
Sbjct: 142 -LPASIASLNRLRELSIRACPELTELPEPLAS-TDASGEHQGLVNLQSLRLEWTGIRSLP 199
Query: 304 RFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNL 347
++L+ L+ L ++N+ + P L KL+ + G T L
Sbjct: 200 ASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDLRGCTAL 242
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 6/132 (4%)
Query: 194 LRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGE 253
L ++ V G +P L +D S NQL+ +P L L L++S N L
Sbjct: 62 LDRCELTKLQVDGTLPV-----LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL 115
Query: 254 IPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLR 313
++ L L+ + L N L P + + L L++NQL + L+ L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 314 YLNLQNNNFHGV 325
L LQ N+ + +
Sbjct: 176 TLLLQENSLYTI 187
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 216 LTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLS 275
LT +D S N+L ++ L LQ L L N L P + L+ +SLA+N L+
Sbjct: 102 LTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT 161
Query: 276 GSVPESMASLTDMVHLDLSSNQLNGTIPRFF 306
+ L ++ L L N L TIP+ F
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 6/132 (4%)
Query: 194 LRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGE 253
L ++ V G +P L +D S NQL+ +P L L L++S N L
Sbjct: 62 LDRCELTKLQVDGTLPV-----LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL 115
Query: 254 IPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLR 313
++ L L+ + L N L P + + L L++NQL + L+ L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 314 YLNLQNNNFHGV 325
L LQ N+ + +
Sbjct: 176 TLLLQENSLYTI 187
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 276 GSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEK 335
SVP + + T +++L NQ+ P F L +L L+L NN VLP A + +K
Sbjct: 22 ASVPTGIPTTTQVLYL--YDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLP--AGVFDK 76
Query: 336 L-QVFKVGGNTN 346
L Q+ ++ N N
Sbjct: 77 LTQLTQLSLNDN 88
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 269 LASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGV 325
L N ++ P LT + LDL +NQL F L +L L+L +N +
Sbjct: 37 LYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 276 GSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEK 335
SVP + + T +++L NQ+ P F L +L L+L NN VLP A + +K
Sbjct: 30 ASVPTGIPTTTQVLYL--YDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLP--AGVFDK 84
Query: 336 L 336
L
Sbjct: 85 L 85
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 269 LASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGV 325
L N ++ P LT + LDL +NQL F L +L L+L +N +
Sbjct: 45 LYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 101
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 215 NLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSL 274
NL + + Q+ G +P TL +L H L S L G+ L AL + ++ N L
Sbjct: 61 NLDRCELTKLQVDGTLPVLGTL--DLSHNQLQSLPLLGQT------LPALTVLDVSFNRL 112
Query: 275 SGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNF 322
+ ++ L ++ L L N+L P + KL L+L NN+
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDL 160
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 229 KIPTSITLLENLQHLNLSSNGLN---GEIPSSIGDLIALKNVSLASNSLSGSVPESMASL 285
+ PT T L+ + + S+ GL IP + +L L N + VP+ +++
Sbjct: 3 RCPTECTCLDTV--VRCSNKGLKVLPKGIPRDVTELY------LDGNQFT-LVPKELSNY 53
Query: 286 TDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGN 344
+ +DLS+N+++ + FS++ +L L L N + P L+ L++ + GN
Sbjct: 54 KHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN 112
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 6/132 (4%)
Query: 194 LRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGE 253
L ++ V G +P L +D S NQL+ +P L L L++S N L
Sbjct: 62 LDRCELTKLQVDGTLPV-----LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL 115
Query: 254 IPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLR 313
++ L L+ + L N L P + + L L++NQL + L+ L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 314 YLNLQNNNFHGV 325
L LQ N+ + +
Sbjct: 176 TLLLQENSLYTI 187
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 6/132 (4%)
Query: 194 LRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGE 253
L ++ V G +P L +D S NQL+ +P L L L++S N L
Sbjct: 62 LDRCELTKLQVDGTLPV-----LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSL 115
Query: 254 IPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLR 313
++ L L+ + L N L P + + L L++NQL + L+ L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 314 YLNLQNNNFHGV 325
L LQ N+ + +
Sbjct: 176 TLLLQENSLYTI 187
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 21/158 (13%)
Query: 200 SNANVTGY----IPKHLH------SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNG 249
S +V GY I + LH +++ +VD S N + TS + L++LQ L +
Sbjct: 6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQT 65
Query: 250 ----LNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTI--P 303
+ + LI LK L N + L ++ L L+ L+G +
Sbjct: 66 PGLVIRNNTFRGLSSLIILK---LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSG 122
Query: 304 RFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKV 341
FF L L L L++NN + P AS ++ F V
Sbjct: 123 NFFKPLTSLEMLVLRDNNIKKIQP--ASFFLNMRRFHV 158
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 10/136 (7%)
Query: 208 IPKHLHS---NLTHVDFSGNQLK--GKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLI 262
+PK + S N+ ++ GN L+ G P + L+ L +L +S L G IP + +
Sbjct: 138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISEAKLTG-IPKDLPE-- 193
Query: 263 ALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNF 322
L + L N + E + + + L L NQ+ S L LR L+L NN
Sbjct: 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL 253
Query: 323 HGVLPFNASILEKLQV 338
V P L+ LQV
Sbjct: 254 SRV-PAGLPDLKLLQV 268
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 25/153 (16%)
Query: 187 IIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLN 244
I N KL ++++SN N+ ++L ++ S N+L ++L+ +L H N
Sbjct: 136 IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHAN 192
Query: 245 LSSNGLNG-EIPSSIGDLIALKNVSLASNSLSGSVPESMA-------SLTD--------- 287
+S N L+ IP ++ +L A N + N + G V + +LTD
Sbjct: 193 VSYNLLSTLAIPIAVEELDASHN---SINVVRGPVNVELTILKLQHNNLTDTAWLLNYPG 249
Query: 288 MVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNN 320
+V +DLS N+L + F +++L L + NN
Sbjct: 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 282
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 229 KIPTSITLLENLQHLNLSSN-GLNGE---------IPSSIGDLIALKNVSLASNSLSG-S 277
K+PT + L Q +N++ N G++GE + +G+ I + + + N+L
Sbjct: 264 KLPTFLKALPEXQLINVACNRGISGEQLKDDWQALADAPVGEKIQI--IYIGYNNLKTFP 321
Query: 278 VPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNN 320
V S+ + L+ NQL G +P F S++ KL LNL N
Sbjct: 322 VETSLQKXKKLGXLECLYNQLEGKLPAFGSEI-KLASLNLAYN 363
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 70/136 (51%), Gaps = 10/136 (7%)
Query: 194 LRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGE 253
+R+V + A+VT + + ++T + +G ++ I L NL++LNL+ N +
Sbjct: 25 IRAV-LQKASVTDVVTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQITDI 81
Query: 254 IPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLR 313
P + +L+ L N+ + +N ++ ++ +LT++ L L+ + ++ P ++L K
Sbjct: 82 SP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISP--LANLTKXY 135
Query: 314 YLNL-QNNNFHGVLPF 328
LNL N+N + P
Sbjct: 136 SLNLGANHNLSDLSPL 151
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 269 LASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGV 325
L N ++ P LT + LDL +NQL F L +L L+L +N +
Sbjct: 37 LYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 21/158 (13%)
Query: 200 SNANVTGY----IPKHLH------SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNG 249
S +V GY I + LH +++ +VD S N + TS + L++LQ L +
Sbjct: 6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQT 65
Query: 250 ----LNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTI--P 303
+ + LI LK L N + L ++ L L+ L+G +
Sbjct: 66 PGLVIRNNTFRGLSSLIILK---LDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSG 122
Query: 304 RFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKV 341
FF L L L L++NN + P AS ++ F V
Sbjct: 123 NFFKPLTSLEMLVLRDNNIKKIQP--ASFFLNMRRFHV 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,757,466
Number of Sequences: 62578
Number of extensions: 356379
Number of successful extensions: 1216
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 742
Number of HSP's gapped (non-prelim): 306
length of query: 437
length of database: 14,973,337
effective HSP length: 102
effective length of query: 335
effective length of database: 8,590,381
effective search space: 2877777635
effective search space used: 2877777635
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)