Query 013710
Match_columns 437
No_of_seqs 680 out of 4008
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 06:36:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013710.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013710hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4194 Membrane glycoprotein 100.0 4.5E-32 9.7E-37 260.5 0.4 321 69-396 147-501 (873)
2 PLN00113 leucine-rich repeat r 100.0 2.2E-28 4.7E-33 268.9 23.0 162 187-348 399-585 (968)
3 PLN00113 leucine-rich repeat r 99.9 3.3E-27 7.1E-32 259.6 18.3 183 163-346 184-368 (968)
4 KOG4194 Membrane glycoprotein 99.9 1E-27 2.2E-32 230.8 3.1 278 69-351 123-433 (873)
5 KOG0444 Cytoskeletal regulator 99.9 1.3E-24 2.9E-29 210.8 -1.9 285 56-351 88-379 (1255)
6 KOG4237 Extracellular matrix p 99.9 7.1E-24 1.5E-28 195.9 1.6 281 97-385 68-395 (498)
7 KOG0444 Cytoskeletal regulator 99.9 1.9E-23 4E-28 202.9 -2.4 259 73-347 9-304 (1255)
8 KOG0472 Leucine-rich repeat pr 99.8 1.1E-21 2.4E-26 181.8 -0.5 116 229-347 426-541 (565)
9 KOG0472 Leucine-rich repeat pr 99.8 1.1E-21 2.4E-26 181.8 -6.5 259 73-347 47-310 (565)
10 PLN03210 Resistant to P. syrin 99.7 8.3E-17 1.8E-21 178.6 20.9 258 71-347 611-906 (1153)
11 cd00116 LRR_RI Leucine-rich re 99.7 4.9E-19 1.1E-23 170.3 1.6 237 91-346 46-319 (319)
12 KOG0617 Ras suppressor protein 99.7 4.6E-20 1E-24 152.6 -5.0 178 164-348 30-213 (264)
13 PRK15370 E3 ubiquitin-protein 99.7 9.6E-18 2.1E-22 175.2 10.8 226 96-348 199-429 (754)
14 KOG0618 Serine/threonine phosp 99.7 5.9E-19 1.3E-23 178.9 -1.9 136 214-352 359-494 (1081)
15 PRK15387 E3 ubiquitin-protein 99.7 1.8E-16 3.9E-21 164.9 14.0 161 166-350 301-461 (788)
16 KOG4237 Extracellular matrix p 99.7 8.7E-19 1.9E-23 162.4 -3.2 236 84-323 79-359 (498)
17 PLN03210 Resistant to P. syrin 99.7 1.1E-15 2.3E-20 169.8 19.8 240 96-349 611-884 (1153)
18 KOG0618 Serine/threonine phosp 99.7 1.4E-18 2.9E-23 176.4 -3.2 178 168-351 242-447 (1081)
19 cd00116 LRR_RI Leucine-rich re 99.7 8.1E-18 1.8E-22 161.8 1.1 238 94-349 21-293 (319)
20 PRK15370 E3 ubiquitin-protein 99.7 5.1E-16 1.1E-20 162.3 14.3 223 96-347 178-401 (754)
21 PRK15387 E3 ubiquitin-protein 99.6 9E-16 2E-20 159.8 10.5 144 167-330 322-465 (788)
22 KOG0617 Ras suppressor protein 99.6 7.4E-18 1.6E-22 139.6 -4.7 158 188-350 29-189 (264)
23 PLN03150 hypothetical protein; 99.6 9.6E-15 2.1E-19 151.8 12.4 112 240-351 420-532 (623)
24 KOG1909 Ran GTPase-activating 99.4 1.7E-14 3.7E-19 132.4 -1.2 244 92-347 26-311 (382)
25 KOG3207 Beta-tubulin folding c 99.4 6.9E-14 1.5E-18 131.8 -0.4 212 93-324 118-340 (505)
26 COG4886 Leucine-rich repeat (L 99.3 4.2E-12 9.1E-17 125.9 8.7 197 100-329 97-296 (394)
27 KOG0532 Leucine-rich repeat (L 99.3 1.8E-13 3.9E-18 132.9 -2.3 158 165-331 96-254 (722)
28 KOG0532 Leucine-rich repeat (L 99.3 1.5E-13 3.2E-18 133.5 -3.1 191 97-321 76-271 (722)
29 KOG1909 Ran GTPase-activating 99.3 1.9E-13 4.2E-18 125.6 -2.3 235 70-323 29-311 (382)
30 PLN03150 hypothetical protein; 99.3 3.2E-11 7E-16 125.6 11.8 108 216-323 420-528 (623)
31 KOG3207 Beta-tubulin folding c 99.2 1.4E-12 3E-17 123.1 0.9 211 117-348 117-340 (505)
32 KOG1259 Nischarin, modulator o 99.2 3E-12 6.4E-17 115.5 0.7 129 214-348 284-413 (490)
33 COG4886 Leucine-rich repeat (L 99.2 3.2E-11 6.9E-16 119.7 7.2 176 164-347 113-290 (394)
34 PF14580 LRR_9: Leucine-rich r 99.2 1.1E-11 2.5E-16 106.8 2.9 16 308-323 111-126 (175)
35 KOG1259 Nischarin, modulator o 99.1 1.5E-11 3.2E-16 111.1 2.4 127 192-324 284-413 (490)
36 PF14580 LRR_9: Leucine-rich r 99.1 1.3E-10 2.7E-15 100.3 4.9 110 234-347 15-126 (175)
37 KOG0531 Protein phosphatase 1, 99.0 4.9E-11 1.1E-15 118.8 0.8 221 92-348 91-319 (414)
38 KOG0531 Protein phosphatase 1, 99.0 4.8E-11 1E-15 118.9 -2.6 217 94-346 70-289 (414)
39 KOG1859 Leucine-rich repeat pr 98.9 1.4E-11 3.1E-16 122.8 -6.7 131 214-350 164-295 (1096)
40 PF13855 LRR_8: Leucine rich r 98.8 1.9E-09 4.1E-14 76.5 2.7 58 264-321 3-60 (61)
41 PF13855 LRR_8: Leucine rich r 98.8 2.9E-09 6.3E-14 75.5 2.6 58 216-273 3-60 (61)
42 KOG2120 SCF ubiquitin ligase, 98.7 2.6E-10 5.6E-15 103.0 -5.2 59 260-320 311-373 (419)
43 COG5238 RNA1 Ran GTPase-activa 98.7 4.2E-09 9E-14 94.2 0.5 241 95-347 29-316 (388)
44 KOG2120 SCF ubiquitin ligase, 98.6 1.6E-09 3.4E-14 98.1 -4.8 176 167-344 185-373 (419)
45 KOG2982 Uncharacterized conser 98.5 3.9E-08 8.6E-13 89.1 1.5 223 97-340 46-285 (418)
46 COG5238 RNA1 Ran GTPase-activa 98.5 2.3E-08 4.9E-13 89.6 -0.1 235 70-324 29-317 (388)
47 KOG4579 Leucine-rich repeat (L 98.4 9.8E-09 2.1E-13 82.6 -4.1 133 215-352 28-164 (177)
48 KOG4658 Apoptotic ATPase [Sign 98.4 4.2E-07 9.2E-12 97.4 6.5 242 73-325 547-809 (889)
49 KOG1859 Leucine-rich repeat pr 98.3 9.1E-09 2E-13 103.3 -6.8 125 193-323 165-292 (1096)
50 KOG4579 Leucine-rich repeat (L 98.3 4E-08 8.8E-13 79.2 -2.0 105 168-275 28-136 (177)
51 KOG2982 Uncharacterized conser 98.3 1.8E-07 3.8E-12 85.0 1.8 185 163-347 67-262 (418)
52 KOG4658 Apoptotic ATPase [Sign 98.2 1E-06 2.3E-11 94.5 4.0 128 192-321 523-653 (889)
53 KOG1644 U2-associated snRNP A' 98.1 4.4E-06 9.5E-11 72.0 5.3 105 238-344 42-150 (233)
54 KOG1644 U2-associated snRNP A' 98.0 8.5E-06 1.8E-10 70.3 4.6 107 214-322 42-152 (233)
55 PF12799 LRR_4: Leucine Rich r 97.9 1.3E-05 2.9E-10 52.2 4.0 36 287-323 2-37 (44)
56 KOG3665 ZYG-1-like serine/thre 97.8 1.3E-05 2.8E-10 84.0 4.0 86 163-251 169-263 (699)
57 PF12799 LRR_4: Leucine Rich r 97.8 1.8E-05 4E-10 51.6 3.2 36 263-299 2-37 (44)
58 KOG3665 ZYG-1-like serine/thre 97.8 8.6E-06 1.9E-10 85.4 2.4 191 96-300 60-264 (699)
59 PRK15386 type III secretion pr 97.8 9.1E-05 2E-09 72.1 9.0 135 164-321 49-188 (426)
60 PRK15386 type III secretion pr 97.7 7.9E-05 1.7E-09 72.5 7.3 113 167-297 72-188 (426)
61 KOG2123 Uncharacterized conser 97.6 3.9E-06 8.5E-11 75.7 -3.3 99 95-220 18-123 (388)
62 KOG2123 Uncharacterized conser 97.3 1.4E-05 3E-10 72.3 -3.6 101 165-268 17-123 (388)
63 KOG2739 Leucine-rich acidic nu 97.3 0.00012 2.5E-09 65.9 1.9 84 238-323 43-129 (260)
64 KOG1947 Leucine rich repeat pr 97.0 0.00015 3.3E-09 73.6 0.1 63 164-226 240-307 (482)
65 PF13306 LRR_5: Leucine rich r 97.0 0.0015 3.3E-08 53.4 6.1 14 233-246 53-66 (129)
66 KOG4308 LRR-containing protein 97.0 8.8E-06 1.9E-10 81.7 -9.0 178 169-346 89-302 (478)
67 PF13306 LRR_5: Leucine rich r 97.0 0.0014 3.1E-08 53.6 5.6 116 215-336 13-128 (129)
68 KOG4308 LRR-containing protein 96.9 7.2E-06 1.6E-10 82.3 -10.3 37 98-134 89-128 (478)
69 TIGR00864 PCC polycystin catio 96.9 0.00098 2.1E-08 77.5 5.0 79 316-394 1-81 (2740)
70 KOG4341 F-box protein containi 96.9 6.3E-05 1.4E-09 71.8 -3.7 102 97-202 139-252 (483)
71 KOG2739 Leucine-rich acidic nu 96.8 0.00031 6.8E-09 63.2 0.3 84 234-317 61-150 (260)
72 KOG4341 F-box protein containi 96.6 0.00044 9.6E-09 66.2 -0.4 234 94-348 188-440 (483)
73 KOG1947 Leucine rich repeat pr 96.2 0.0017 3.6E-08 66.0 1.2 162 165-346 267-439 (482)
74 PF08693 SKG6: Transmembrane a 95.1 0.02 4.3E-07 35.8 2.4 28 409-436 11-38 (40)
75 PF00560 LRR_1: Leucine Rich R 94.6 0.016 3.5E-07 31.3 1.0 12 288-299 2-13 (22)
76 PF00560 LRR_1: Leucine Rich R 94.0 0.023 5.1E-07 30.7 0.8 12 216-227 2-13 (22)
77 KOG0473 Leucine-rich repeat pr 93.9 0.0016 3.6E-08 57.7 -6.2 83 214-299 42-124 (326)
78 PTZ00382 Variant-specific surf 93.0 0.073 1.6E-06 41.0 2.3 21 407-427 63-83 (96)
79 PF04478 Mid2: Mid2 like cell 92.4 0.13 2.8E-06 42.6 3.1 24 409-432 48-71 (154)
80 KOG0473 Leucine-rich repeat pr 92.2 0.0033 7.2E-08 55.8 -6.7 87 234-323 38-124 (326)
81 PF13504 LRR_7: Leucine rich r 90.9 0.17 3.6E-06 25.4 1.5 11 288-298 3-13 (17)
82 smart00370 LRR Leucine-rich re 89.5 0.34 7.4E-06 27.2 2.2 14 286-299 2-15 (26)
83 smart00369 LRR_TYP Leucine-ric 89.5 0.34 7.4E-06 27.2 2.2 14 286-299 2-15 (26)
84 PF08374 Protocadherin: Protoc 89.5 0.43 9.2E-06 41.8 3.7 28 409-436 37-64 (221)
85 PF01102 Glycophorin_A: Glycop 88.5 0.16 3.6E-06 40.7 0.5 25 409-433 63-87 (122)
86 KOG3864 Uncharacterized conser 87.5 0.15 3.2E-06 44.6 -0.4 82 97-201 102-185 (221)
87 PF03302 VSP: Giardia variant- 87.2 0.7 1.5E-05 45.7 4.1 32 406-437 363-394 (397)
88 KOG3864 Uncharacterized conser 86.8 0.12 2.6E-06 45.2 -1.3 10 311-320 152-161 (221)
89 smart00369 LRR_TYP Leucine-ric 86.1 0.61 1.3E-05 26.1 1.8 14 238-251 2-15 (26)
90 smart00370 LRR Leucine-rich re 86.1 0.61 1.3E-05 26.1 1.8 14 238-251 2-15 (26)
91 PF02439 Adeno_E3_CR2: Adenovi 84.6 0.38 8.3E-06 29.5 0.5 11 414-424 7-17 (38)
92 PF13516 LRR_6: Leucine Rich r 84.2 0.19 4.1E-06 27.6 -0.9 13 287-299 3-15 (24)
93 PF01034 Syndecan: Syndecan do 83.5 0.33 7.2E-06 33.7 -0.1 25 409-433 12-36 (64)
94 PF15176 LRR19-TM: Leucine-ric 80.3 1.1 2.4E-05 34.2 1.6 31 406-436 14-44 (102)
95 PF02009 Rifin_STEVOR: Rifin/s 80.1 0.69 1.5E-05 43.5 0.7 26 412-437 258-283 (299)
96 smart00365 LRR_SD22 Leucine-ri 79.6 1.5 3.2E-05 24.8 1.7 17 120-136 1-17 (26)
97 PF02439 Adeno_E3_CR2: Adenovi 79.3 1.9 4.1E-05 26.6 2.1 26 410-435 7-32 (38)
98 PF01690 PLRV_ORF5: Potato lea 79.3 1.4 3.1E-05 43.4 2.5 10 98-107 76-85 (465)
99 PRK10781 rcsF outer membrane l 73.9 4 8.6E-05 33.3 3.3 16 1-16 1-16 (133)
100 KOG3763 mRNA export factor TAP 73.0 2.3 4.9E-05 43.0 2.0 13 165-177 242-254 (585)
101 smart00082 LRRCT Leucine rich 72.6 0.8 1.7E-05 30.4 -0.8 36 344-379 1-37 (51)
102 TIGR01478 STEVOR variant surfa 71.8 3.6 7.9E-05 37.9 2.9 9 429-437 278-286 (295)
103 KOG4242 Predicted myosin-I-bin 71.3 11 0.00024 37.6 6.2 182 163-345 264-479 (553)
104 PF13908 Shisa: Wnt and FGF in 71.3 3.4 7.3E-05 35.9 2.6 13 410-422 79-91 (179)
105 PTZ00370 STEVOR; Provisional 71.3 3.8 8.3E-05 37.8 2.9 9 429-437 274-282 (296)
106 smart00364 LRR_BAC Leucine-ric 69.3 3.4 7.3E-05 23.3 1.4 18 310-328 2-19 (26)
107 PF12877 DUF3827: Domain of un 68.8 6.9 0.00015 40.3 4.4 27 409-435 269-295 (684)
108 PF15102 TMEM154: TMEM154 prot 68.3 16 0.00034 30.3 5.6 6 411-416 59-64 (146)
109 smart00368 LRR_RI Leucine rich 68.1 2.5 5.4E-05 24.2 0.7 17 167-183 2-18 (28)
110 PHA03265 envelope glycoprotein 66.9 3.4 7.4E-05 39.1 1.7 10 427-436 366-375 (402)
111 PF06697 DUF1191: Protein of u 66.4 11 0.00025 34.8 5.0 34 403-436 207-240 (278)
112 PF14575 EphA2_TM: Ephrin type 66.2 0.99 2.1E-05 33.0 -1.5 17 415-431 6-22 (75)
113 PF05454 DAG1: Dystroglycan (D 64.8 2.1 4.6E-05 40.0 0.0 24 410-433 148-171 (290)
114 PF13908 Shisa: Wnt and FGF in 62.2 7 0.00015 33.9 2.8 25 409-433 74-98 (179)
115 PF15102 TMEM154: TMEM154 prot 62.1 2.5 5.4E-05 34.9 -0.1 8 412-419 57-64 (146)
116 PF01034 Syndecan: Syndecan do 60.9 2.9 6.3E-05 29.2 0.1 28 410-437 9-37 (64)
117 PF04689 S1FA: DNA binding pro 60.9 22 0.00048 24.7 4.3 26 410-435 13-38 (69)
118 PF01299 Lamp: Lysosome-associ 60.0 5.3 0.00012 38.0 1.8 18 411-428 271-288 (306)
119 PTZ00046 rifin; Provisional 59.9 8.3 0.00018 37.1 3.0 15 46-60 35-49 (358)
120 TIGR01477 RIFIN variant surfac 59.5 8.5 0.00019 36.9 3.0 22 46-68 38-59 (353)
121 PF04478 Mid2: Mid2 like cell 58.7 3.3 7E-05 34.5 0.1 31 406-437 49-79 (154)
122 PF01102 Glycophorin_A: Glycop 57.5 3.2 7E-05 33.4 -0.2 35 402-437 60-94 (122)
123 PTZ00382 Variant-specific surf 57.3 25 0.00054 27.1 4.7 22 405-426 65-86 (96)
124 PF12191 stn_TNFRSF12A: Tumour 56.8 7.1 0.00015 31.2 1.7 26 410-435 79-104 (129)
125 PF10873 DUF2668: Protein of u 56.5 15 0.00032 30.2 3.4 26 409-434 60-85 (155)
126 PF06365 CD34_antigen: CD34/Po 56.2 17 0.00038 32.0 4.1 9 411-419 101-109 (202)
127 TIGR00864 PCC polycystin catio 55.8 8.7 0.00019 46.5 2.8 31 269-299 2-32 (2740)
128 PF14991 MLANA: Protein melan- 54.8 3.3 7.1E-05 32.4 -0.5 15 413-427 27-41 (118)
129 PF12301 CD99L2: CD99 antigen 51.5 17 0.00036 31.2 3.2 30 408-437 113-142 (169)
130 PF14914 LRRC37AB_C: LRRC37A/B 51.1 9.3 0.0002 31.5 1.5 29 409-437 119-147 (154)
131 KOG3763 mRNA export factor TAP 49.6 10 0.00023 38.5 1.9 64 164-227 215-283 (585)
132 PF06024 DUF912: Nucleopolyhed 44.7 47 0.001 25.8 4.5 23 411-433 60-82 (101)
133 PF05808 Podoplanin: Podoplani 44.6 7.3 0.00016 32.8 0.0 26 410-435 129-154 (162)
134 PF14610 DUF4448: Protein of u 43.5 18 0.00038 31.7 2.3 25 410-434 159-183 (189)
135 smart00367 LRR_CC Leucine-rich 41.2 20 0.00044 19.8 1.5 13 120-132 1-13 (26)
136 PF07462 MSP1_C: Merozoite sur 40.6 38 0.00082 34.3 4.2 9 98-106 333-341 (574)
137 PF05283 MGC-24: Multi-glycosy 40.0 28 0.0006 30.4 2.8 25 413-437 161-185 (186)
138 PF12768 Rax2: Cortical protei 39.9 40 0.00087 31.6 4.1 20 409-428 228-247 (281)
139 KOG1219 Uncharacterized conser 39.7 91 0.002 37.9 7.2 19 338-356 3916-3934(4289)
140 PF11857 DUF3377: Domain of un 39.6 88 0.0019 22.7 4.8 22 412-433 31-52 (74)
141 TIGR01167 LPXTG_anchor LPXTG-m 39.4 35 0.00075 20.2 2.5 9 428-436 24-32 (34)
142 PF02529 PetG: Cytochrome B6-F 39.2 37 0.0008 20.8 2.4 25 413-437 7-31 (37)
143 CHL00008 petG cytochrome b6/f 37.8 43 0.00093 20.4 2.5 26 412-437 6-31 (37)
144 KOG4242 Predicted myosin-I-bin 37.6 27 0.00058 35.0 2.6 179 165-347 163-367 (553)
145 PRK00665 petG cytochrome b6-f 36.8 44 0.00096 20.3 2.4 26 412-437 6-31 (37)
146 PTZ00208 65 kDa invariant surf 35.3 13 0.00029 36.0 0.1 28 410-437 387-414 (436)
147 PF07204 Orthoreo_P10: Orthore 34.3 24 0.00051 26.7 1.3 8 418-425 50-57 (98)
148 PF02480 Herpes_gE: Alphaherpe 34.1 13 0.00029 37.2 0.0 29 409-437 355-383 (439)
149 PF15345 TMEM51: Transmembrane 33.7 1E+02 0.0022 27.8 5.3 15 413-428 61-75 (233)
150 PF07213 DAP10: DAP10 membrane 29.8 36 0.00079 24.9 1.6 24 410-433 34-57 (79)
151 PHA03099 epidermal growth fact 29.8 32 0.00069 27.7 1.4 19 417-435 107-125 (139)
152 KOG1094 Discoidin domain recep 29.2 41 0.00088 34.8 2.4 25 409-433 390-414 (807)
153 PF07010 Endomucin: Endomucin; 28.9 41 0.00088 30.0 2.0 17 410-426 188-204 (259)
154 PF08138 Sex_peptide: Sex pept 27.8 29 0.00064 23.1 0.8 7 1-7 1-7 (56)
155 PF05393 Hum_adeno_E3A: Human 26.7 57 0.0012 24.4 2.2 21 409-429 33-53 (94)
156 PF11353 DUF3153: Protein of u 26.5 59 0.0013 29.0 2.8 23 414-436 184-206 (209)
157 PF03908 Sec20: Sec20; InterP 25.7 65 0.0014 24.4 2.5 10 424-433 80-89 (92)
158 PF14575 EphA2_TM: Ephrin type 25.2 59 0.0013 23.7 2.1 20 417-436 5-24 (75)
159 PF05725 FNIP: FNIP Repeat; I 24.9 1E+02 0.0022 19.5 3.0 7 193-199 13-19 (44)
160 PF05454 DAG1: Dystroglycan (D 24.8 24 0.00053 33.1 0.0 28 410-437 145-172 (290)
161 PF14986 DUF4514: Domain of un 24.2 1.2E+02 0.0027 20.2 3.1 27 409-435 21-47 (61)
162 PF07462 MSP1_C: Merozoite sur 24.2 1.2E+02 0.0025 31.0 4.5 8 73-80 333-340 (574)
163 PF01299 Lamp: Lysosome-associ 23.4 14 0.0003 35.2 -1.9 23 409-431 273-295 (306)
164 PF08374 Protocadherin: Protoc 23.3 1.6E+02 0.0035 26.2 4.7 26 407-433 39-64 (221)
165 PF15176 LRR19-TM: Leucine-ric 23.1 1.3E+02 0.0027 23.3 3.5 27 410-436 14-40 (102)
166 PF12877 DUF3827: Domain of un 23.0 69 0.0015 33.3 2.8 27 409-436 266-292 (684)
167 PF05337 CSF-1: Macrophage col 22.4 29 0.00063 32.0 0.0 27 410-436 225-251 (285)
168 COG3889 Predicted solute bindi 20.8 1.6E+02 0.0035 31.6 4.8 23 414-436 848-871 (872)
169 PF12259 DUF3609: Protein of u 20.7 86 0.0019 30.6 2.8 20 412-431 300-319 (361)
No 1
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=4.5e-32 Score=260.54 Aligned_cols=321 Identities=20% Similarity=0.210 Sum_probs=232.8
Q ss_pred hhhhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhc---
Q 013710 69 QIRALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLS--- 145 (437)
Q Consensus 69 ~~~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~--- 145 (437)
.+..|++||++.+. .+.+.-..+..=.++++|+|++|.|+. +..+.|.++.+|..|.|++|+++.+ |...+..
T Consensus 147 ~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~-l~~~~F~~lnsL~tlkLsrNrittL--p~r~Fk~L~~ 222 (873)
T KOG4194|consen 147 ALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITT-LETGHFDSLNSLLTLKLSRNRITTL--PQRSFKRLPK 222 (873)
T ss_pred hHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeeccccccc-cccccccccchheeeecccCccccc--CHHHhhhcch
Confidence 35567888888743 233333333333456666666665542 2224455555555555555555433 3222211
Q ss_pred ---------------------ccccccc----ccCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEee
Q 013710 146 ---------------------LLSFSCI----HSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTIS 200 (437)
Q Consensus 146 ---------------------l~~l~~l----~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~ 200 (437)
+.++.++ +.+..+.+.+|..+.++++|+|+.|+++.. -...+-+++.|+.|+++
T Consensus 223 L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v-n~g~lfgLt~L~~L~lS 301 (873)
T KOG4194|consen 223 LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV-NEGWLFGLTSLEQLDLS 301 (873)
T ss_pred hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh-hcccccccchhhhhccc
Confidence 1122211 233367777888888999999999888654 33456778899999999
Q ss_pred CCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCC
Q 013710 201 NANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSV 278 (437)
Q Consensus 201 ~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 278 (437)
+|.|...-++.+. ++|++|+|++|+|+...++.|..+..|++|+|++|.++......|..+.+|+.|||++|.+.+.+
T Consensus 302 ~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I 381 (873)
T KOG4194|consen 302 YNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCI 381 (873)
T ss_pred hhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEE
Confidence 9988877777665 88999999999998777888888999999999999988666677888999999999999988543
Q ss_pred ---ccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCc-ccc
Q 013710 279 ---PESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNH-TVL 354 (437)
Q Consensus 279 ---~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~-~~~ 354 (437)
...|.++++|+.|+|.+|++..+.-..|.++..|++|||.+|.|..+-+..|..+ +|++|.+..-.++|+|+ .|+
T Consensus 382 EDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl 460 (873)
T KOG4194|consen 382 EDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWL 460 (873)
T ss_pred ecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHH
Confidence 3457789999999999999987777889999999999999999988888888888 89999999999999999 777
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013710 355 SSKLKLGIAPCDKHGLPISPPPAKDNSSDDSENDSSDDDDSD 396 (437)
Q Consensus 355 ~~~~~~~~~~c~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 396 (437)
..|....... ......|+.|+...+......+.....|.+.
T Consensus 461 ~qWl~~~~lq-~sv~a~CayPe~Lad~~i~svd~~~lvC~Ds 501 (873)
T KOG4194|consen 461 AQWLYRRKLQ-SSVIAKCAYPEPLADQSIVSVDTANLVCDDS 501 (873)
T ss_pred HHHHHhcccc-cceeeeccCCcccccceeEeechhhceecCC
Confidence 7777654333 4445678889988888877777777777654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=2.2e-28 Score=268.92 Aligned_cols=162 Identities=32% Similarity=0.547 Sum_probs=84.2
Q ss_pred hhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCC-----------------------CCCc
Q 013710 187 IIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLL-----------------------ENLQ 241 (437)
Q Consensus 187 ~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l-----------------------~~L~ 241 (437)
.+..+++|++|++++|++++..|..+. ++|+.|++++|.+.+.++..+..+ .+|+
T Consensus 399 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~ 478 (968)
T PLN00113 399 SLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLE 478 (968)
T ss_pred HHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccce
Confidence 344444444455544444444444333 444444444444444444333334 4444
Q ss_pred EEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCc
Q 013710 242 HLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNN 321 (437)
Q Consensus 242 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~ 321 (437)
.|++++|++++..|..+..+++|+.|++++|++.+.+|..+.++++|++|+|++|.+++.+|..+..+++|+.|+|++|+
T Consensus 479 ~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 558 (968)
T PLN00113 479 NLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ 558 (968)
T ss_pred EEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCc
Confidence 55555555554555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCCCCCCcccCCCCCEEEecCCCCCC
Q 013710 322 FHGVLPFNASILEKLQVFKVGGNTNLC 348 (437)
Q Consensus 322 l~~~~~~~l~~l~~L~~L~l~~N~~~c 348 (437)
+++.+|..+..+.+|+.+++++|++.+
T Consensus 559 l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 559 LSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred ccccCChhHhcCcccCEEeccCCccee
Confidence 555555555555555555555555544
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=3.3e-27 Score=259.58 Aligned_cols=183 Identities=34% Similarity=0.509 Sum_probs=117.3
Q ss_pred hcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCC
Q 013710 163 LSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENL 240 (437)
Q Consensus 163 ~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L 240 (437)
+.++++|++|++++|.+... ++..++++++|++|++++|.+.+.+|..+. ++|++|++++|.+.+..|..|.++++|
T Consensus 184 ~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 262 (968)
T PLN00113 184 LTNLTSLEFLTLASNQLVGQ-IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNL 262 (968)
T ss_pred hhhCcCCCeeeccCCCCcCc-CChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCC
Confidence 44555666666666655432 444555666666666666666655555554 566666666666665666666666666
Q ss_pred cEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCC
Q 013710 241 QHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNN 320 (437)
Q Consensus 241 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N 320 (437)
++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+..|..+..+++|+.|++++|
T Consensus 263 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 342 (968)
T PLN00113 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN 342 (968)
T ss_pred CEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCC
Confidence 66666666666566666666666666666666666666666666666666777666666666666666777777777777
Q ss_pred cCCCCCCCCcccCCCCCEEEecCCCC
Q 013710 321 NFHGVLPFNASILEKLQVFKVGGNTN 346 (437)
Q Consensus 321 ~l~~~~~~~l~~l~~L~~L~l~~N~~ 346 (437)
.+++.+|..+..+++|+.|++++|..
T Consensus 343 ~l~~~~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 343 KFSGEIPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred CCcCcCChHHhCCCCCcEEECCCCee
Confidence 77666666666677777777777654
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=1e-27 Score=230.78 Aligned_cols=278 Identities=20% Similarity=0.238 Sum_probs=180.3
Q ss_pred hhhhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhcccc
Q 013710 69 QIRALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLS 148 (437)
Q Consensus 69 ~~~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~ 148 (437)
...+|+.|++.++ ....+.-+.++.++.|+.||||.|.+. .++...|..-.++++|+|++|+|+.+. .+-+..+.+
T Consensus 123 ~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~--~~~F~~lns 198 (873)
T KOG4194|consen 123 ESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLE--TGHFDSLNS 198 (873)
T ss_pred cccceeEEeeecc-ccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccc--cccccccch
Confidence 4567888888774 345666677777899999999999885 566678888889999999999998762 221212222
Q ss_pred ccc----cccCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcC------------------------ccEEEee
Q 013710 149 FSC----IHSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHK------------------------LRSVTIS 200 (437)
Q Consensus 149 l~~----l~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~------------------------L~~L~L~ 200 (437)
+.. -+.+..++...|.++++|+.|+|..|.+.... .-.|.++++ +++|+|+
T Consensus 199 L~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive-~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~ 277 (873)
T KOG4194|consen 199 LLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE-GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLE 277 (873)
T ss_pred heeeecccCcccccCHHHhhhcchhhhhhccccceeeeh-hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecc
Confidence 221 14555777777888888888888888775331 123444444 4555555
Q ss_pred CCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCC
Q 013710 201 NANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSV 278 (437)
Q Consensus 201 ~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 278 (437)
.|+++..-...++ +.|+.|+||+|.|..+.++.+...++|++|+|++|+|+...++.|..+..|+.|+|++|++...-
T Consensus 278 ~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~ 357 (873)
T KOG4194|consen 278 TNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLA 357 (873)
T ss_pred cchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHH
Confidence 5555432222222 55666666666666555555566666666666666666555556666666666666666666444
Q ss_pred ccccCCCCCCCeeeccCCcCCCcc---hhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCc
Q 013710 279 PESMASLTDMVHLDLSSNQLNGTI---PRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNH 351 (437)
Q Consensus 279 ~~~l~~l~~L~~L~L~~N~l~~~~---~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~ 351 (437)
...|..+++|++|||++|.+...+ ...|.++++|+.|++.+|++..+.-..|..+..|+.|||.+|+....-.
T Consensus 358 e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~ 433 (873)
T KOG4194|consen 358 EGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQP 433 (873)
T ss_pred hhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecc
Confidence 445666677777777777765433 3456677777778888887775555677777788888888877655433
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=1.3e-24 Score=210.75 Aligned_cols=285 Identities=22% Similarity=0.333 Sum_probs=213.5
Q ss_pred CCCCCCCCCCChhhhhhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCC
Q 013710 56 PVASSHPSPLDPKQIRALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAP 135 (437)
Q Consensus 56 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 135 (437)
.....+.++.+...+..|..||++.+..- .....+....++..|+||+|+| ..+|...|.+++.|-+|||++|++..
T Consensus 88 N~LKnsGiP~diF~l~dLt~lDLShNqL~--EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~NrLe~ 164 (1255)
T KOG0444|consen 88 NNLKNSGIPTDIFRLKDLTILDLSHNQLR--EVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSNNRLEM 164 (1255)
T ss_pred cccccCCCCchhcccccceeeecchhhhh--hcchhhhhhcCcEEEEcccCcc-ccCCchHHHhhHhHhhhccccchhhh
Confidence 34444555555555666666776664321 1112333445677777777776 35665667777777777777777754
Q ss_pred CCCCchhhhccccccccc----cCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcc
Q 013710 136 IHFPNDLSLSLLSFSCIH----SLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKH 211 (437)
Q Consensus 136 i~lp~~l~~~l~~l~~l~----~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 211 (437)
+ |+.+. ++..+..+. -+.++.-.-+-.|..|+.|.+++.+-+...+|..+..+.+|+.+|++.|.+. .+|+.
T Consensus 165 L--PPQ~R-RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 165 L--PPQIR-RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred c--CHHHH-HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 3 44332 111111110 0000000113356678888888887766667888889999999999999998 78887
Q ss_pred cc--cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCC-CccccCCCCCC
Q 013710 212 LH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGS-VPESMASLTDM 288 (437)
Q Consensus 212 ~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L 288 (437)
+. .+|+.|+||+|+|+ .+........+|+.|+|+.|+++ .+|+++.++++|+.|.+.+|+++-+ +|..++.+.+|
T Consensus 241 ly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L 318 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL 318 (1255)
T ss_pred HhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence 77 89999999999998 55556677789999999999999 8999999999999999999998843 78899999999
Q ss_pred CeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCc
Q 013710 289 VHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNH 351 (437)
Q Consensus 289 ~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~ 351 (437)
+++..++|.+. ..|+.+..+.+|+.|.|+.|++- .+|+.+.-++.|+.||+.+|+.+-..+
T Consensus 319 evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 319 EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred HHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 99999999998 88999999999999999999998 789999999999999999999887655
No 6
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=7.1e-24 Score=195.95 Aligned_cols=281 Identities=17% Similarity=0.194 Sum_probs=191.6
Q ss_pred CeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhcccccccc-----ccCCCCChhhhcCCCCCCE
Q 013710 97 HLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCI-----HSLHHLSGVFLSRFVNLTD 171 (437)
Q Consensus 97 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l-----~~l~~l~~~~~~~l~~L~~ 171 (437)
.-++++|..|+|. .+|+.+|+.+++|+.|||++|.|+.| .++-+..+.++..+ +.++.++...|+++..|+.
T Consensus 68 ~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I--~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 68 ETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFI--APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred cceEEEeccCCcc-cCChhhccchhhhceecccccchhhc--ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 4566667666663 55666777777777777777766554 22222222222211 3444666777888888888
Q ss_pred EEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCc-ccc--cCccEEEccCCcCC------------CCCChhccC
Q 013710 172 LTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPK-HLH--SNLTHVDFSGNQLK------------GKIPTSITL 236 (437)
Q Consensus 172 L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~--~~L~~L~Ls~n~l~------------~~~~~~l~~ 236 (437)
|.+.-|.+.-. ..+.|..+++|..|.+.+|.+. .++. .+. .+++.+.+..|.+- ...+..+++
T Consensus 145 LllNan~i~Ci-r~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg 222 (498)
T KOG4237|consen 145 LLLNANHINCI-RQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG 222 (498)
T ss_pred HhcChhhhcch-hHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence 88888887644 5677888888888888888887 4444 343 66777777776621 112222222
Q ss_pred CCCCcEEEc-------------------------cCCCCCCCCC-cccCCCcccceeecccccCCCCCccccCCCCCCCe
Q 013710 237 LENLQHLNL-------------------------SSNGLNGEIP-SSIGDLIALKNVSLASNSLSGSVPESMASLTDMVH 290 (437)
Q Consensus 237 l~~L~~L~L-------------------------~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 290 (437)
.....-..+ +.+...+..| ..|..+++|+.|+|++|++++.-..+|.+..++++
T Consensus 223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e 302 (498)
T KOG4237|consen 223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE 302 (498)
T ss_pred ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence 221111111 1121222222 35788999999999999999888899999999999
Q ss_pred eeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCc-ccccccccccccCCCCCC
Q 013710 291 LDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNH-TVLSSKLKLGIAPCDKHG 369 (437)
Q Consensus 291 L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~-~~~~~~~~~~~~~c~~~~ 369 (437)
|.|..|++...-...|.++..|+.|+|.+|+|+...|..|..+.+|..|++-.|||.|+|. .|+..|+.-.- ....
T Consensus 303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~---~~~~ 379 (498)
T KOG4237|consen 303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS---VVGN 379 (498)
T ss_pred hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCC---CCCC
Confidence 9999999998778899999999999999999998899999999999999999999999999 56666654321 2233
Q ss_pred CCCCCCCCCCCCCCCC
Q 013710 370 LPISPPPAKDNSSDDS 385 (437)
Q Consensus 370 ~~~~~p~~~~~~~~~~ 385 (437)
.+|..|......+..+
T Consensus 380 ~~Cq~p~~~~~~~~~d 395 (498)
T KOG4237|consen 380 PRCQSPGFVRQIPISD 395 (498)
T ss_pred CCCCCCchhccccchh
Confidence 3455444444333333
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.86 E-value=1.9e-23 Score=202.88 Aligned_cols=259 Identities=25% Similarity=0.363 Sum_probs=142.0
Q ss_pred ccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhcccccccc
Q 013710 73 LQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCI 152 (437)
Q Consensus 73 L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l 152 (437)
++-.|++++++-.+.-......++++++|.|...++. .+| +.++.+.+|++|.+++|++..++ ..+..+..+
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vP-eEL~~lqkLEHLs~~HN~L~~vh------GELs~Lp~L 80 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVP-EELSRLQKLEHLSMAHNQLISVH------GELSDLPRL 80 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hCh-HHHHHHhhhhhhhhhhhhhHhhh------hhhccchhh
Confidence 4556677766654444455556777888888777663 454 67788888888888888764331 111111111
Q ss_pred ccCC---------CCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc---cCccEEE
Q 013710 153 HSLH---------HLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH---SNLTHVD 220 (437)
Q Consensus 153 ~~l~---------~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~---~~L~~L~ 220 (437)
..+. .++. .+-++..|..||||+|++.. .|..+..-+++-+|+|++|+|. .+|..++ ..|-.||
T Consensus 81 Rsv~~R~N~LKnsGiP~-diF~l~dLt~lDLShNqL~E--vP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLD 156 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPT-DIFRLKDLTILDLSHNQLRE--VPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLD 156 (1255)
T ss_pred HHHhhhccccccCCCCc-hhcccccceeeecchhhhhh--cchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhc
Confidence 1110 1111 12356666666666666632 4455555566666666666665 5565555 4455666
Q ss_pred ccCCcCCCCCChhccCCCCCcEEEccCCCCC-------------------------CCCCcccCCCcccceeecccccCC
Q 013710 221 FSGNQLKGKIPTSITLLENLQHLNLSSNGLN-------------------------GEIPSSIGDLIALKNVSLASNSLS 275 (437)
Q Consensus 221 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-------------------------~~~~~~l~~l~~L~~L~L~~n~l~ 275 (437)
||+|++. .+|..+..+..|+.|+|++|.+. ..+|..+..+.+|..+|++.|.+.
T Consensus 157 LS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp 235 (1255)
T KOG0444|consen 157 LSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP 235 (1255)
T ss_pred cccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC
Confidence 6666666 55555666666666666666543 123333344444555555555554
Q ss_pred CCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCC
Q 013710 276 GSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNL 347 (437)
Q Consensus 276 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~ 347 (437)
.+|+.+-++.+|+.|+|++|+|+ .+....+...+|+.|+++.|+++ .+|..+..+++|+.|.+.+|+..
T Consensus 236 -~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~ 304 (1255)
T KOG0444|consen 236 -IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLT 304 (1255)
T ss_pred -cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCccc
Confidence 44555555555555555555554 22223333445555555555555 55555566666666665555543
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.82 E-value=1.1e-21 Score=181.78 Aligned_cols=116 Identities=28% Similarity=0.483 Sum_probs=96.7
Q ss_pred CCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcC
Q 013710 229 KIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSD 308 (437)
Q Consensus 229 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 308 (437)
..|..++.+++|..|+|++|.+. .+|..++.+..|+.|++++|++. ..|..+..+..++.+-.++|++....+..+.+
T Consensus 426 fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~n 503 (565)
T KOG0472|consen 426 FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKN 503 (565)
T ss_pred cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhh
Confidence 34455667788888888888777 67777888888888888888887 77777777777777777778888777777999
Q ss_pred CCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCC
Q 013710 309 LKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNL 347 (437)
Q Consensus 309 l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~ 347 (437)
+.+|..|||.+|.+. .+|..++++.+|++|+++|||+.
T Consensus 504 m~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 504 MRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 999999999999999 77888999999999999999986
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.79 E-value=1.1e-21 Score=181.79 Aligned_cols=259 Identities=24% Similarity=0.378 Sum_probs=201.2
Q ss_pred ccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhcccccccc
Q 013710 73 LQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCI 152 (437)
Q Consensus 73 L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l 152 (437)
|..+.+++++. ...-+...++..++.|++++|++. ..| .+++.+..++.|++++|+++.+ |+.+.... .+..+
T Consensus 47 l~~lils~N~l--~~l~~dl~nL~~l~vl~~~~n~l~-~lp-~aig~l~~l~~l~vs~n~ls~l--p~~i~s~~-~l~~l 119 (565)
T KOG0472|consen 47 LQKLILSHNDL--EVLREDLKNLACLTVLNVHDNKLS-QLP-AAIGELEALKSLNVSHNKLSEL--PEQIGSLI-SLVKL 119 (565)
T ss_pred hhhhhhccCch--hhccHhhhcccceeEEEeccchhh-hCC-HHHHHHHHHHHhhcccchHhhc--cHHHhhhh-hhhhh
Confidence 33444444333 333445667778888888888875 344 5788888888888888887654 65543211 11111
Q ss_pred ----ccCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc-cCccEEEccCCcCC
Q 013710 153 ----HSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH-SNLTHVDFSGNQLK 227 (437)
Q Consensus 153 ----~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~~L~~L~Ls~n~l~ 227 (437)
+.+..++. .++.+..|+.++..+|++.. .+..+.++.+|..+++.+|+++...+..+. +.|++||...|.++
T Consensus 120 ~~s~n~~~el~~-~i~~~~~l~dl~~~~N~i~s--lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~ 196 (565)
T KOG0472|consen 120 DCSSNELKELPD-SIGRLLDLEDLDATNNQISS--LPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE 196 (565)
T ss_pred hccccceeecCc-hHHHHhhhhhhhcccccccc--CchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh
Confidence 12222332 35677788899999998853 566788888999999999999866565555 89999999999988
Q ss_pred CCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhc
Q 013710 228 GKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFS 307 (437)
Q Consensus 228 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 307 (437)
.+|..++++.+|+.|+|.+|++. .+| .|.++..|++|+++.|+|.-...+...++.++.+|||.+|+++ ..|+.+.
T Consensus 197 -tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~c 272 (565)
T KOG0472|consen 197 -TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEIC 272 (565)
T ss_pred -cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHH
Confidence 88889999999999999999998 677 7999999999999999998434444569999999999999999 7788888
Q ss_pred CCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCC
Q 013710 308 DLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNL 347 (437)
Q Consensus 308 ~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~ 347 (437)
-+.+|++||+++|.++ .+|..++++ +|+.|-+.|||..
T Consensus 273 lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH
Confidence 9999999999999999 678889999 9999999999964
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.74 E-value=8.3e-17 Score=178.58 Aligned_cols=258 Identities=19% Similarity=0.305 Sum_probs=156.9
Q ss_pred hhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCC-CCCCCCchhh----hc
Q 013710 71 RALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPI-APIHFPNDLS----LS 145 (437)
Q Consensus 71 ~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~i~lp~~l~----~~ 145 (437)
.+|..|++.++.. ....+.+..+++|++|+|++|.....++ .+..+++|++|+|++|.. .. +|..+. ..
T Consensus 611 ~~L~~L~L~~s~l--~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~~L~~--lp~si~~L~~L~ 684 (1153)
T PLN03210 611 ENLVKLQMQGSKL--EKLWDGVHSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCSSLVE--LPSSIQYLNKLE 684 (1153)
T ss_pred cCCcEEECcCccc--cccccccccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCCCccc--cchhhhccCCCC
Confidence 3456666655322 1122334456667777776665444544 356666677777766642 22 233321 11
Q ss_pred cccccccccCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCccc-------------
Q 013710 146 LLSFSCIHSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHL------------- 212 (437)
Q Consensus 146 l~~l~~l~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~------------- 212 (437)
...+..+..+..++... ++++|+.|++++|..... ++. ...+|++|++++|.+. .+|..+
T Consensus 685 ~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~-~p~---~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~ 757 (1153)
T PLN03210 685 DLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKS-FPD---ISTNISWLDLDETAIE-EFPSNLRLENLDELILCEM 757 (1153)
T ss_pred EEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccc-ccc---ccCCcCeeecCCCccc-ccccccccccccccccccc
Confidence 11222223333333322 455666666666543211 211 1234555555555543 222211
Q ss_pred -------------------ccCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeeccccc
Q 013710 213 -------------------HSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNS 273 (437)
Q Consensus 213 -------------------~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 273 (437)
.++|+.|++++|.....+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|.
T Consensus 758 ~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 758 KSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS 836 (1153)
T ss_pred chhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence 1577888888887666788888888888888888875444666655 67888888888875
Q ss_pred CCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCC-cCCCCCCCCcccCCCCCEEEecCCCCC
Q 013710 274 LSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNN-NFHGVLPFNASILEKLQVFKVGGNTNL 347 (437)
Q Consensus 274 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~l~~l~~L~~L~l~~N~~~ 347 (437)
....+|.. ..+|++|+|++|.++ .+|..+..+++|++|++++| +++ .++..+..+++|+.+++++|..+
T Consensus 837 ~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 837 RLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred cccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCccc
Confidence 54445443 367889999999988 67788889999999999985 455 56767778888999998888755
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=4.9e-19 Score=170.30 Aligned_cols=237 Identities=20% Similarity=0.280 Sum_probs=120.2
Q ss_pred CCCCCCCeeEEEccCCCCCC--c---CChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcC
Q 013710 91 SSKPFSHLLSLRLSNCSDDI--S---LSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSR 165 (437)
Q Consensus 91 ~~~~l~~L~~L~Ls~n~~~~--~---~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~ 165 (437)
.+...+++++|+++++.+.. . .....+.++++|++|++++|.+... .+..+ ......
T Consensus 46 ~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~-----------------~~l~~~ 107 (319)
T cd00116 46 ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD-GCGVL-----------------ESLLRS 107 (319)
T ss_pred HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh-HHHHH-----------------HHHhcc
Confidence 34444556666666665531 0 0013455566666666666655321 00000 011122
Q ss_pred CCCCCEEEeecCCCCCCc---hhHhhcCC-cCccEEEeeCCcccccCCcc----cc--cCccEEEccCCcCCCC----CC
Q 013710 166 FVNLTDLTVTNVPVNASG---LYVIIGNM-HKLRSVTISNANVTGYIPKH----LH--SNLTHVDFSGNQLKGK----IP 231 (437)
Q Consensus 166 l~~L~~L~ls~n~l~~~~---~~~~l~~l-~~L~~L~L~~n~l~~~~~~~----~~--~~L~~L~Ls~n~l~~~----~~ 231 (437)
++|++|++++|.+...+ +...+..+ ++|++|++++|.+++..... +. .+|++|++++|.+++. ++
T Consensus 108 -~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 186 (319)
T cd00116 108 -SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALA 186 (319)
T ss_pred -CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHH
Confidence 44777777776665322 22334445 66677777777666322221 11 4566677766666532 22
Q ss_pred hhccCCCCCcEEEccCCCCCCC----CCcccCCCcccceeecccccCCCCCccccC-----CCCCCCeeeccCCcCCC--
Q 013710 232 TSITLLENLQHLNLSSNGLNGE----IPSSIGDLIALKNVSLASNSLSGSVPESMA-----SLTDMVHLDLSSNQLNG-- 300 (437)
Q Consensus 232 ~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~L~~N~l~~-- 300 (437)
..+..+++|++|++++|.+++. +...+..+++|++|++++|.+++.....+. ..+.|++|++++|.+++
T Consensus 187 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~ 266 (319)
T cd00116 187 EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDG 266 (319)
T ss_pred HHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHH
Confidence 2334455667777766666532 122344556666777776666542111111 23566667776666652
Q ss_pred --cchhhhcCCCCCCEEeccCCcCCCC----CCCCcccC-CCCCEEEecCCCC
Q 013710 301 --TIPRFFSDLKKLRYLNLQNNNFHGV----LPFNASIL-EKLQVFKVGGNTN 346 (437)
Q Consensus 301 --~~~~~l~~l~~L~~L~L~~N~l~~~----~~~~l~~l-~~L~~L~l~~N~~ 346 (437)
.+...+..+++|+++++++|.+++. ....+... +.|+.+++.+|+|
T Consensus 267 ~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 267 AKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 2223444556666677777666643 22222333 4566666666654
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.73 E-value=4.6e-20 Score=152.63 Aligned_cols=178 Identities=25% Similarity=0.419 Sum_probs=156.3
Q ss_pred cCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCc
Q 013710 164 SRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQ 241 (437)
Q Consensus 164 ~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 241 (437)
-.+.+++.|.+++|+++. ++..+..+.+|+.|++.+|++. ..|..+. +.|+.|+++-|++. ..|..|+.++.|+
T Consensus 30 f~~s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred cchhhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 367788999999999964 5556888999999999999998 6777776 89999999999998 8999999999999
Q ss_pred EEEccCCCCC-CCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCC
Q 013710 242 HLNLSSNGLN-GEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNN 320 (437)
Q Consensus 242 ~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N 320 (437)
.|||.+|++. ..+|..|..+..|+.|+|++|.+. .+|..++++++|+.|.+.+|.+. .+|..++.+.+|++|.+.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 9999999986 467889999999999999999998 78888999999999999999998 78899999999999999999
Q ss_pred cCCCCCCCCcccCCC---CCEEEecCCCCCC
Q 013710 321 NFHGVLPFNASILEK---LQVFKVGGNTNLC 348 (437)
Q Consensus 321 ~l~~~~~~~l~~l~~---L~~L~l~~N~~~c 348 (437)
+++ .+|..++.+.- =+.+.+.+|||.-
T Consensus 184 rl~-vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 184 RLT-VLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred eee-ecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 999 66666665432 2456778899875
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.73 E-value=9.6e-18 Score=175.22 Aligned_cols=226 Identities=22% Similarity=0.348 Sum_probs=160.5
Q ss_pred CCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhcccccc-ccccCCCCChhhhcCCCCCCEEEe
Q 013710 96 SHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFS-CIHSLHHLSGVFLSRFVNLTDLTV 174 (437)
Q Consensus 96 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~-~l~~l~~l~~~~~~~l~~L~~L~l 174 (437)
.+|+.|+|++|++. .++. .+. .+|++|++++|+++.+ |..++..+..+. .-+.+..++.... .+|+.|++
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~-~l~--~nL~~L~Ls~N~LtsL--P~~l~~~L~~L~Ls~N~L~~LP~~l~---s~L~~L~L 269 (754)
T PRK15370 199 EQITTLILDNNELK-SLPE-NLQ--GNIKTLYANSNQLTSI--PATLPDTIQEMELSINRITELPERLP---SALQSLDL 269 (754)
T ss_pred cCCcEEEecCCCCC-cCCh-hhc--cCCCEEECCCCccccC--ChhhhccccEEECcCCccCcCChhHh---CCCCEEEC
Confidence 46889999998886 5553 332 5899999999988754 655543332222 1123334444332 47888999
Q ss_pred ecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccccCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCC
Q 013710 175 TNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEI 254 (437)
Q Consensus 175 s~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 254 (437)
++|++.. ++..+. .+|+.|++++|+++ .+|..+..+|+.|++++|.++. +|..+ .++|+.|++++|.++ .+
T Consensus 270 s~N~L~~--LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt-~L 340 (754)
T PRK15370 270 FHNKISC--LPENLP--EELRYLSVYDNSIR-TLPAHLPSGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALT-SL 340 (754)
T ss_pred cCCccCc--cccccC--CCCcEEECCCCccc-cCcccchhhHHHHHhcCCcccc-CCccc--cccceeccccCCccc-cC
Confidence 9888863 444332 47899999999888 4666666788889999998883 45433 268999999999988 46
Q ss_pred CcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCc----
Q 013710 255 PSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNA---- 330 (437)
Q Consensus 255 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l---- 330 (437)
|..+. ++|+.|++++|+++ .+|..+. ++|++|+|++|+++. +|..+. ..|+.|++++|+++ .+|..+
T Consensus 341 P~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~ 411 (754)
T PRK15370 341 PASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFR 411 (754)
T ss_pred Chhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHh
Confidence 65553 68999999999998 5665553 689999999999984 454443 36899999999998 555544
Q ss_pred ccCCCCCEEEecCCCCCC
Q 013710 331 SILEKLQVFKVGGNTNLC 348 (437)
Q Consensus 331 ~~l~~L~~L~l~~N~~~c 348 (437)
..++++..+++.+|++..
T Consensus 412 ~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 412 GEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred hcCCCccEEEeeCCCccH
Confidence 345778899999999764
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.71 E-value=5.9e-19 Score=178.95 Aligned_cols=136 Identities=29% Similarity=0.414 Sum_probs=115.3
Q ss_pred cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeec
Q 013710 214 SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDL 293 (437)
Q Consensus 214 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 293 (437)
..|+.|++.+|.+++..-..+.+..+|+.|+|++|++.......+.++..|++|+|++|+++ .+|..+..+..|++|..
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a 437 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA 437 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence 56888899999998877778889999999999999998555566889999999999999998 78899999999999999
Q ss_pred cCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCcc
Q 013710 294 SSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNHT 352 (437)
Q Consensus 294 ~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~~ 352 (437)
.+|++. ..| .+..++.|+.+|++.|+++...-......++|++||++||.|+-....
T Consensus 438 hsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~ 494 (1081)
T KOG0618|consen 438 HSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHK 494 (1081)
T ss_pred cCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchh
Confidence 999998 677 688999999999999999854333333448999999999998665543
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.69 E-value=1.8e-16 Score=164.95 Aligned_cols=161 Identities=25% Similarity=0.321 Sum_probs=114.7
Q ss_pred CCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccccCccEEEccCCcCCCCCChhccCCCCCcEEEc
Q 013710 166 FVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNL 245 (437)
Q Consensus 166 l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 245 (437)
.++|++|++++|.+.. ++.. ..+|+.|++++|.+++ +|. +..+|++|+|++|+++ .+|.. ..+|+.|++
T Consensus 301 p~~L~~LdLS~N~L~~--Lp~l---p~~L~~L~Ls~N~L~~-LP~-lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~L 369 (788)
T PRK15387 301 PPGLQELSVSDNQLAS--LPAL---PSELCKLWAYNNQLTS-LPT-LPSGLQELSVSDNQLA-SLPTL---PSELYKLWA 369 (788)
T ss_pred ccccceeECCCCcccc--CCCC---cccccccccccCcccc-ccc-cccccceEecCCCccC-CCCCC---Ccccceehh
Confidence 3567777777776643 2221 1356667777777763 443 3367888888888887 34432 346777888
Q ss_pred cCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCC
Q 013710 246 SSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGV 325 (437)
Q Consensus 246 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 325 (437)
++|.++ .+|.. ..+|+.|++++|+++ .+|.. .++|+.|++++|+++. +|.. ..+|+.|++++|+++ .
T Consensus 370 s~N~L~-~LP~l---~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~ 436 (788)
T PRK15387 370 YNNRLT-SLPAL---PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-R 436 (788)
T ss_pred hccccc-cCccc---ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-c
Confidence 888887 45543 357889999999988 45543 3679999999999984 5543 346889999999999 6
Q ss_pred CCCCcccCCCCCEEEecCCCCCCcC
Q 013710 326 LPFNASILEKLQVFKVGGNTNLCYN 350 (437)
Q Consensus 326 ~~~~l~~l~~L~~L~l~~N~~~c~~ 350 (437)
+|..+..+++|+.|++++|++....
T Consensus 437 LP~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 437 LPESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred cChHHhhccCCCeEECCCCCCCchH
Confidence 8888999999999999999987543
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.69 E-value=8.7e-19 Score=162.45 Aligned_cols=236 Identities=20% Similarity=0.249 Sum_probs=181.1
Q ss_pred CCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEeccc-CCCCCCCCCchhhhcccccccc----ccCCCC
Q 013710 84 CSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFN-CPIAPIHFPNDLSLSLLSFSCI----HSLHHL 158 (437)
Q Consensus 84 c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~i~lp~~l~~~l~~l~~l----~~l~~l 158 (437)
...+.-.+|+.+.+||.|||++|+|. .|.+++|+++.+|..|-+.+ |+|+.+ |.+....+..+..+ ..+.-+
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l--~k~~F~gL~slqrLllNan~i~Ci 155 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDL--PKGAFGGLSSLQRLLLNANHINCI 155 (498)
T ss_pred cccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhh--hhhHhhhHHHHHHHhcChhhhcch
Confidence 44667788999999999999999996 55669999999999887777 889866 77776665555533 344566
Q ss_pred ChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccc------------cCCccc--------------
Q 013710 159 SGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTG------------YIPKHL-------------- 212 (437)
Q Consensus 159 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~------------~~~~~~-------------- 212 (437)
....+..+++|..|.+.+|.+... ....|..+..++.+.+..|.+.. ..+..+
T Consensus 156 r~~al~dL~~l~lLslyDn~~q~i-~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~ 234 (498)
T KOG4237|consen 156 RQDALRDLPSLSLLSLYDNKIQSI-CKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYK 234 (498)
T ss_pred hHHHHHHhhhcchhcccchhhhhh-ccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHH
Confidence 667899999999999999988643 33367778888888888776211 011110
Q ss_pred ----------ccCccEE--Ec-cCCcCCCCCC-hhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCC
Q 013710 213 ----------HSNLTHV--DF-SGNQLKGKIP-TSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSV 278 (437)
Q Consensus 213 ----------~~~L~~L--~L-s~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 278 (437)
...++.+ .+ +.+...+..| ..|.++++|+.|+|++|+++++-+.+|.+..+++.|.|..|++....
T Consensus 235 Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~ 314 (498)
T KOG4237|consen 235 RINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVS 314 (498)
T ss_pred HhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHH
Confidence 0111111 11 1222333333 36889999999999999999888899999999999999999998666
Q ss_pred ccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCC
Q 013710 279 PESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFH 323 (437)
Q Consensus 279 ~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 323 (437)
...|.++..|++|+|.+|+|+...|..|..+.+|.+|+|-.|.+.
T Consensus 315 ~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 315 SGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred HHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 778999999999999999999888999999999999999998774
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.68 E-value=1.1e-15 Score=169.80 Aligned_cols=240 Identities=23% Similarity=0.331 Sum_probs=135.9
Q ss_pred CCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCC-CCCCCCCchh---hhccccccccccCCCCChhhhcCCCCCCE
Q 013710 96 SHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCP-IAPIHFPNDL---SLSLLSFSCIHSLHHLSGVFLSRFVNLTD 171 (437)
Q Consensus 96 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~i~lp~~l---~~~l~~l~~l~~l~~l~~~~~~~l~~L~~ 171 (437)
.+|++|++++|.+. .++ ..+..+++|++|+|++|. +..+ |..- ......+.++..+..++. .+.++++|+.
T Consensus 611 ~~L~~L~L~~s~l~-~L~-~~~~~l~~Lk~L~Ls~~~~l~~i--p~ls~l~~Le~L~L~~c~~L~~lp~-si~~L~~L~~ 685 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLW-DGVHSLTGLRNIDLRGSKNLKEI--PDLSMATNLETLKLSDCSSLVELPS-SIQYLNKLED 685 (1153)
T ss_pred cCCcEEECcCcccc-ccc-cccccCCCCCEEECCCCCCcCcC--CccccCCcccEEEecCCCCccccch-hhhccCCCCE
Confidence 45666666665553 222 345556666666666553 2222 2100 001111122222223332 2445556666
Q ss_pred EEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccccCccEEEccCCcCCCCCChhc-----------------
Q 013710 172 LTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSI----------------- 234 (437)
Q Consensus 172 L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l----------------- 234 (437)
|++++|..... ++..+ ++++|++|++++|...+.+|. ...+|++|++++|.+. .+|..+
T Consensus 686 L~L~~c~~L~~-Lp~~i-~l~sL~~L~Lsgc~~L~~~p~-~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~ 761 (1153)
T PLN03210 686 LDMSRCENLEI-LPTGI-NLKSLYRLNLSGCSRLKSFPD-ISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEK 761 (1153)
T ss_pred EeCCCCCCcCc-cCCcC-CCCCCCEEeCCCCCCcccccc-ccCCcCeeecCCCccc-cccccccccccccccccccchhh
Confidence 66665532211 22222 455666666666544433332 2256777777777665 333221
Q ss_pred -------------cCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCc
Q 013710 235 -------------TLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGT 301 (437)
Q Consensus 235 -------------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 301 (437)
...++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ ++++|++|+|++|.....
T Consensus 762 l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 762 LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT 840 (1153)
T ss_pred ccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc
Confidence 012356667777766555677777777777777777765433555544 567777777777655444
Q ss_pred chhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCc
Q 013710 302 IPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCY 349 (437)
Q Consensus 302 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~ 349 (437)
+|.. ..+|++|+|++|.++ .+|..+..+++|+.|++++|+.+-.
T Consensus 841 ~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 841 FPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred cccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCc
Confidence 4432 357888999999888 6788889999999999999776544
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.68 E-value=1.4e-18 Score=176.35 Aligned_cols=178 Identities=26% Similarity=0.378 Sum_probs=111.5
Q ss_pred CCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCcEEEc
Q 013710 168 NLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNL 245 (437)
Q Consensus 168 ~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 245 (437)
+|+++++++|.+. .++++++.+.+|+.++..+|+++ .+|..+. .+|+.|...+|.+. -+|....+++.|+.|+|
T Consensus 242 nl~~~dis~n~l~--~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 242 NLQYLDISHNNLS--NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred cceeeecchhhhh--cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence 3444444444442 24455566666666666666664 3343333 45555555555555 34455566777777777
Q ss_pred cCCCCCCCCCcccC--------------------------CCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCC
Q 013710 246 SSNGLNGEIPSSIG--------------------------DLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLN 299 (437)
Q Consensus 246 ~~n~l~~~~~~~l~--------------------------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~ 299 (437)
..|++. ..|+.+. .++.|+.|++.+|.+++.....+.+.++|+.|+|++|++.
T Consensus 318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred hhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 777776 3333211 1234667777777777665566777788888888888887
Q ss_pred CcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCc
Q 013710 300 GTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNH 351 (437)
Q Consensus 300 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~ 351 (437)
......+.++..|++|+|+||+++ .+|..+..+..|++|...+|...|+..
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fPe 447 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFPE 447 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeechh
Confidence 555566777778888888888877 566666777777777777777777664
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.67 E-value=8.1e-18 Score=161.84 Aligned_cols=238 Identities=21% Similarity=0.255 Sum_probs=168.9
Q ss_pred CCCCeeEEEccCCCCCCc----CChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCC
Q 013710 94 PFSHLLSLRLSNCSDDIS----LSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNL 169 (437)
Q Consensus 94 ~l~~L~~L~Ls~n~~~~~----~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L 169 (437)
.+.+|++|++++|.+... +. ..+...++|++|+++++.+... +..+ ......+..+.+|
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~-~~l~~~~~l~~l~l~~~~~~~~--~~~~--------------~~~~~~l~~~~~L 83 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALA-SALRPQPSLKELCLSLNETGRI--PRGL--------------QSLLQGLTKGCGL 83 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHH-HHHhhCCCceEEeccccccCCc--chHH--------------HHHHHHHHhcCce
Confidence 345699999999987532 22 4566778899999999876521 1111 0111245678899
Q ss_pred CEEEeecCCCCCCchhHhhcCC---cCccEEEeeCCcccccCCc----ccc---cCccEEEccCCcCCCC----CChhcc
Q 013710 170 TDLTVTNVPVNASGLYVIIGNM---HKLRSVTISNANVTGYIPK----HLH---SNLTHVDFSGNQLKGK----IPTSIT 235 (437)
Q Consensus 170 ~~L~ls~n~l~~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~----~~~---~~L~~L~Ls~n~l~~~----~~~~l~ 235 (437)
++|++++|.+... ....+..+ ++|++|++++|++.+.... .+. ++|+.|++++|.+++. +...+.
T Consensus 84 ~~L~l~~~~~~~~-~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 162 (319)
T cd00116 84 QELDLSDNALGPD-GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162 (319)
T ss_pred eEEEccCCCCChh-HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence 9999999998643 33334444 4499999999998742221 121 6889999999999842 334567
Q ss_pred CCCCCcEEEccCCCCCCC----CCcccCCCcccceeecccccCCCC----CccccCCCCCCCeeeccCCcCCCcchhhhc
Q 013710 236 LLENLQHLNLSSNGLNGE----IPSSIGDLIALKNVSLASNSLSGS----VPESMASLTDMVHLDLSSNQLNGTIPRFFS 307 (437)
Q Consensus 236 ~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 307 (437)
.+.+|++|++++|.+++. ++..+...++|++|++++|.+.+. +...+..+++|++|++++|.+++.....+.
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~ 242 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA 242 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHH
Confidence 788999999999999842 223455667999999999998744 344567789999999999999863333222
Q ss_pred -----CCCCCCEEeccCCcCCC----CCCCCcccCCCCCEEEecCCCCCCc
Q 013710 308 -----DLKKLRYLNLQNNNFHG----VLPFNASILEKLQVFKVGGNTNLCY 349 (437)
Q Consensus 308 -----~l~~L~~L~L~~N~l~~----~~~~~l~~l~~L~~L~l~~N~~~c~ 349 (437)
..+.|++|++++|.+++ .+...+..+++|+++++++|...-.
T Consensus 243 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 243 SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 24799999999999973 2233445668999999999986543
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.67 E-value=5.1e-16 Score=162.35 Aligned_cols=223 Identities=19% Similarity=0.372 Sum_probs=109.2
Q ss_pred CCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhcccccc-ccccCCCCChhhhcCCCCCCEEEe
Q 013710 96 SHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFS-CIHSLHHLSGVFLSRFVNLTDLTV 174 (437)
Q Consensus 96 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~-~l~~l~~l~~~~~~~l~~L~~L~l 174 (437)
.+.+.|++++++++ .+| ..+ .++|+.|++++|+++.+ |..+...+..+. .-+.+..++... ..+|+.|++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP-~~I--p~~L~~L~Ls~N~LtsL--P~~l~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIP-ACI--PEQITTLILDNNELKSL--PENLQGNIKTLYANSNQLTSIPATL---PDTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCC-ccc--ccCCcEEEecCCCCCcC--ChhhccCCCEEECCCCccccCChhh---hccccEEEC
Confidence 36789999998875 455 333 25899999999999854 554332111111 001222222211 124555555
Q ss_pred ecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccccCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCC
Q 013710 175 TNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEI 254 (437)
Q Consensus 175 s~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 254 (437)
++|.+.. ++..+. .+|+.|++++|+++ .+|..+..+|+.|++++|+++. +|..+. .+|+.|++++|.++ .+
T Consensus 249 s~N~L~~--LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt-~L 319 (754)
T PRK15370 249 SINRITE--LPERLP--SALQSLDLFHNKIS-CLPENLPEELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT-AL 319 (754)
T ss_pred cCCccCc--CChhHh--CCCCEEECcCCccC-ccccccCCCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc-cC
Confidence 5555432 222221 24555555555554 3444444455555555555542 232221 24555555555554 23
Q ss_pred CcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCC
Q 013710 255 PSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILE 334 (437)
Q Consensus 255 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~ 334 (437)
|..+. ++|+.|++++|.++. +|..+. ++|+.|++++|+++ .+|..+. ++|++|++++|+++ .+|..+. .
T Consensus 320 P~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~ 388 (754)
T PRK15370 320 PETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP--A 388 (754)
T ss_pred Ccccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--H
Confidence 32221 355555555555552 333332 45555666655555 3333332 35555666666555 2333322 2
Q ss_pred CCCEEEecCCCCC
Q 013710 335 KLQVFKVGGNTNL 347 (437)
Q Consensus 335 ~L~~L~l~~N~~~ 347 (437)
.|+.|++++|...
T Consensus 389 sL~~LdLs~N~L~ 401 (754)
T PRK15370 389 ALQIMQASRNNLV 401 (754)
T ss_pred HHHHHhhccCCcc
Confidence 4555555555543
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.63 E-value=9e-16 Score=159.75 Aligned_cols=144 Identities=24% Similarity=0.323 Sum_probs=116.2
Q ss_pred CCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccccCccEEEccCCcCCCCCChhccCCCCCcEEEcc
Q 013710 167 VNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLS 246 (437)
Q Consensus 167 ~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 246 (437)
.+|+.|++++|.+.. ++.. ..+|++|+|++|++++ +|. +..+|+.|++++|++. .+|.. ..+|+.|+++
T Consensus 322 ~~L~~L~Ls~N~L~~--LP~l---p~~Lq~LdLS~N~Ls~-LP~-lp~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs 390 (788)
T PRK15387 322 SELCKLWAYNNQLTS--LPTL---PSGLQELSVSDNQLAS-LPT-LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVS 390 (788)
T ss_pred ccccccccccCcccc--cccc---ccccceEecCCCccCC-CCC-CCcccceehhhccccc-cCccc---ccccceEEec
Confidence 468899999999864 3321 2489999999999984 554 3478999999999998 45543 3579999999
Q ss_pred CCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCC
Q 013710 247 SNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVL 326 (437)
Q Consensus 247 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 326 (437)
+|.++ .+|.. ..+|+.|++++|+++ .+|... .+|+.|++++|+++ .+|..+.++++|+.|+|++|++++..
T Consensus 391 ~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 391 GNRLT-SLPVL---PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred CCccc-CCCCc---ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchH
Confidence 99998 45543 367999999999998 466533 57889999999998 67888999999999999999999876
Q ss_pred CCCc
Q 013710 327 PFNA 330 (437)
Q Consensus 327 ~~~l 330 (437)
+..+
T Consensus 462 ~~~L 465 (788)
T PRK15387 462 LQAL 465 (788)
T ss_pred HHHH
Confidence 6655
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=7.4e-18 Score=139.63 Aligned_cols=158 Identities=30% Similarity=0.482 Sum_probs=142.9
Q ss_pred hcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccc
Q 013710 188 IGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALK 265 (437)
Q Consensus 188 l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 265 (437)
+-++.+++.|.|++|+++ .+|..+. .+|+.|++++|+|+ .+|..++.+++|+.|+++-|++. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 445678899999999999 6666666 89999999999998 78899999999999999999998 8999999999999
Q ss_pred eeecccccCCC-CCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCC
Q 013710 266 NVSLASNSLSG-SVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGN 344 (437)
Q Consensus 266 ~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N 344 (437)
.|||.+|++.. .+|..|..+..|+.|+|++|.+. .+|..++++++|+.|.+.+|.+- .+|..++.+.+|++|++.||
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 99999999984 47888888999999999999998 78888999999999999999998 78999999999999999999
Q ss_pred CCCCcC
Q 013710 345 TNLCYN 350 (437)
Q Consensus 345 ~~~c~~ 350 (437)
+..--.
T Consensus 184 rl~vlp 189 (264)
T KOG0617|consen 184 RLTVLP 189 (264)
T ss_pred eeeecC
Confidence 865443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.58 E-value=9.6e-15 Score=151.85 Aligned_cols=112 Identities=36% Similarity=0.573 Sum_probs=100.8
Q ss_pred CcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccC
Q 013710 240 LQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQN 319 (437)
Q Consensus 240 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~ 319 (437)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|+|++|++.+.+|..+.++++|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 77899999999999999999999999999999999989998999999999999999999999999999999999999999
Q ss_pred CcCCCCCCCCcccC-CCCCEEEecCCCCCCcCc
Q 013710 320 NNFHGVLPFNASIL-EKLQVFKVGGNTNLCYNH 351 (437)
Q Consensus 320 N~l~~~~~~~l~~l-~~L~~L~l~~N~~~c~~~ 351 (437)
|++++.+|..+... .++..+++.+|+.+|..+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99999999877653 467789999999998643
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.41 E-value=1.7e-14 Score=132.42 Aligned_cols=244 Identities=17% Similarity=0.206 Sum_probs=175.6
Q ss_pred CCCCCCeeEEEccCCCCCCcC---ChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCC
Q 013710 92 SKPFSHLLSLRLSNCSDDISL---SSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVN 168 (437)
Q Consensus 92 ~~~l~~L~~L~Ls~n~~~~~~---~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~ 168 (437)
...+..+++|+|++|.+.... -...+.+.++|+..++++--.+.. -..++..+. +-+..+...++
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~--~~Ei~e~L~----------~l~~aL~~~~~ 93 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRL--KDEIPEALK----------MLSKALLGCPK 93 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCc--HHHHHHHHH----------HHHHHHhcCCc
Confidence 334568999999999885331 124577788888888886533221 122222211 11234557779
Q ss_pred CCEEEeecCCCCCCc---hhHhhcCCcCccEEEeeCCcccccCCcc-------------cc--cCccEEEccCCcCCCCC
Q 013710 169 LTDLTVTNVPVNASG---LYVIIGNMHKLRSVTISNANVTGYIPKH-------------LH--SNLTHVDFSGNQLKGKI 230 (437)
Q Consensus 169 L~~L~ls~n~l~~~~---~~~~l~~l~~L~~L~L~~n~l~~~~~~~-------------~~--~~L~~L~Ls~n~l~~~~ 230 (437)
|++||||+|.+...+ +...+.++..|++|+|.+|++....... .. +.|+++...+|++....
T Consensus 94 L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~g 173 (382)
T KOG1909|consen 94 LQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGG 173 (382)
T ss_pred eeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccccc
Confidence 999999999998665 4567888999999999999886332211 11 78999999999987432
Q ss_pred ----ChhccCCCCCcEEEccCCCCCCC----CCcccCCCcccceeecccccCCCC----CccccCCCCCCCeeeccCCcC
Q 013710 231 ----PTSITLLENLQHLNLSSNGLNGE----IPSSIGDLIALKNVSLASNSLSGS----VPESMASLTDMVHLDLSSNQL 298 (437)
Q Consensus 231 ----~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~N~l 298 (437)
...|...+.|+.+.+..|.|... ....|..+++|+.|||.+|.++.. +...+..+++|+.|++++|.+
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 34577789999999999988632 224578899999999999999843 456677889999999999999
Q ss_pred CCcchhhh-----cCCCCCCEEeccCCcCCCC----CCCCcccCCCCCEEEecCCCCC
Q 013710 299 NGTIPRFF-----SDLKKLRYLNLQNNNFHGV----LPFNASILEKLQVFKVGGNTNL 347 (437)
Q Consensus 299 ~~~~~~~l-----~~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~l~~N~~~ 347 (437)
.......| ...++|+.|++.+|.++.. +...+...+.|..|++++|.+-
T Consensus 254 ~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 254 ENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 86444332 2468999999999999742 2222345788999999999983
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=6.9e-14 Score=131.84 Aligned_cols=212 Identities=16% Similarity=0.174 Sum_probs=127.3
Q ss_pred CCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCEE
Q 013710 93 KPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDL 172 (437)
Q Consensus 93 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L 172 (437)
+++.+|+++.|.++.............+++++.|||++|-+..+ .....+...+++|+.|
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw--------------------~~v~~i~eqLp~Le~L 177 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNW--------------------FPVLKIAEQLPSLENL 177 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhH--------------------HHHHHHHHhcccchhc
Confidence 35667888888877653222113566778888888888766443 1112245677778888
Q ss_pred EeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCccc---ccCccEEEccCCcCCCCCChhccCCCCCcEEEccCCC
Q 013710 173 TVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHL---HSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNG 249 (437)
Q Consensus 173 ~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~---~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 249 (437)
+++.|.+....-...-..++.|+.|.|+.|+++..--..+ +++|+.|+|.+|...........-+..|++|||++|+
T Consensus 178 Nls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 178 NLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN 257 (505)
T ss_pred ccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence 8888777533211122245677778888877763211111 1777788887774332333344556677888888777
Q ss_pred CCCCC-CcccCCCcccceeecccccCCCC-Cccc-----cCCCCCCCeeeccCCcCCCc-chhhhcCCCCCCEEeccCCc
Q 013710 250 LNGEI-PSSIGDLIALKNVSLASNSLSGS-VPES-----MASLTDMVHLDLSSNQLNGT-IPRFFSDLKKLRYLNLQNNN 321 (437)
Q Consensus 250 l~~~~-~~~l~~l~~L~~L~L~~n~l~~~-~~~~-----l~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L~L~~N~ 321 (437)
+-+.. -...+.++.|..|+++.+.+... .|+. ...+++|++|++..|++.+. .-..+..+++|+.|.+..|.
T Consensus 258 li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 258 LIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred ccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 65321 12356677777777777777633 2222 34567788888888887532 11334455667777777777
Q ss_pred CCC
Q 013710 322 FHG 324 (437)
Q Consensus 322 l~~ 324 (437)
++.
T Consensus 338 ln~ 340 (505)
T KOG3207|consen 338 LNK 340 (505)
T ss_pred ccc
Confidence 763
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.31 E-value=4.2e-12 Score=125.94 Aligned_cols=197 Identities=32% Similarity=0.518 Sum_probs=153.2
Q ss_pred EEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCC-CCCCEEEeecCC
Q 013710 100 SLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRF-VNLTDLTVTNVP 178 (437)
Q Consensus 100 ~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l-~~L~~L~ls~n~ 178 (437)
.+++..+.+.... ..+..++.++.|++.+|.++.+ +.. ...+ .+|+.|++++|.
T Consensus 97 ~l~~~~~~~~~~~--~~~~~~~~l~~L~l~~n~i~~i--~~~---------------------~~~~~~nL~~L~l~~N~ 151 (394)
T COG4886 97 SLDLNLNRLRSNI--SELLELTNLTSLDLDNNNITDI--PPL---------------------IGLLKSNLKELDLSDNK 151 (394)
T ss_pred eeeccccccccCc--hhhhcccceeEEecCCcccccC--ccc---------------------cccchhhcccccccccc
Confidence 6888888764332 3567778999999999998765 321 2244 389999999999
Q ss_pred CCCCchhHhhcCCcCccEEEeeCCcccccCCccc--ccCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCc
Q 013710 179 VNASGLYVIIGNMHKLRSVTISNANVTGYIPKHL--HSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPS 256 (437)
Q Consensus 179 l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 256 (437)
+.. ++..++.+++|+.|++++|++.. ++... .++|+.|++++|++. .+|........|++|++++|.+. ..+.
T Consensus 152 i~~--l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~ 226 (394)
T COG4886 152 IES--LPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLS 226 (394)
T ss_pred hhh--hhhhhhccccccccccCCchhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecch
Confidence 854 33467889999999999999984 55543 389999999999998 66666566677999999999654 5556
Q ss_pred ccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCC
Q 013710 257 SIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFN 329 (437)
Q Consensus 257 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 329 (437)
.+.++.++..+.+.+|++. ..+..++.++.+++|++++|.++.... +..+.++++|++++|.+....+..
T Consensus 227 ~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 227 SLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred hhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccchhh
Confidence 7888889999999999887 446778888889999999999985433 888899999999999888655543
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.29 E-value=1.8e-13 Score=132.92 Aligned_cols=158 Identities=28% Similarity=0.495 Sum_probs=103.7
Q ss_pred CCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc-cCccEEEccCCcCCCCCChhccCCCCCcEE
Q 013710 165 RFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH-SNLTHVDFSGNQLKGKIPTSITLLENLQHL 243 (437)
Q Consensus 165 ~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 243 (437)
.+..|+.+.+..|.+- .++..+.++..|++|||+.|++. ..|..++ --|+.|-+++|+++ .+|..++.+..|..|
T Consensus 96 ~f~~Le~liLy~n~~r--~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lpLkvli~sNNkl~-~lp~~ig~~~tl~~l 171 (722)
T KOG0532|consen 96 AFVSLESLILYHNCIR--TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLPLKVLIVSNNKLT-SLPEEIGLLPTLAHL 171 (722)
T ss_pred HHHHHHHHHHHhccce--ecchhhhhhhHHHHhhhccchhh-cCChhhhcCcceeEEEecCccc-cCCcccccchhHHHh
Confidence 3445555666666553 24555666777777777777776 5566555 56777777777776 566666666777777
Q ss_pred EccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCC
Q 013710 244 NLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFH 323 (437)
Q Consensus 244 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 323 (437)
|.+.|.+. .+|..++.+.+|+.|++..|++. .+|..+.. -.|..||++.|++. .+|-.|.+|..|++|-|.+|.+.
T Consensus 172 d~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 172 DVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 77777776 56666777777777777777776 45555553 34666777777776 56667777777777777777776
Q ss_pred CCCCCCcc
Q 013710 324 GVLPFNAS 331 (437)
Q Consensus 324 ~~~~~~l~ 331 (437)
..|..++
T Consensus 248 -SPPAqIC 254 (722)
T KOG0532|consen 248 -SPPAQIC 254 (722)
T ss_pred -CChHHHH
Confidence 4444443
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.29 E-value=1.5e-13 Score=133.47 Aligned_cols=191 Identities=23% Similarity=0.402 Sum_probs=143.6
Q ss_pred CeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCEEEeec
Q 013710 97 HLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTVTN 176 (437)
Q Consensus 97 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L~ls~ 176 (437)
--...||+.|.+. ++| ..+..+-.|+.+.++.|.+..+ |. ...++..|.+||++.
T Consensus 76 dt~~aDlsrNR~~-elp-~~~~~f~~Le~liLy~n~~r~i--p~---------------------~i~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELP-EEACAFVSLESLILYHNCIRTI--PE---------------------AICNLEALTFLDLSS 130 (722)
T ss_pred chhhhhccccccc-cCc-hHHHHHHHHHHHHHHhccceec--ch---------------------hhhhhhHHHHhhhcc
Confidence 3344555555552 343 4455555555566655555332 22 455788899999999
Q ss_pred CCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCC
Q 013710 177 VPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEI 254 (437)
Q Consensus 177 n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 254 (437)
|+++. ++..+..|+ |+.|-+++|+++ .+|..+. ..|..||.+.|.+. .+|..++++.+|+.|.+..|++. .+
T Consensus 131 NqlS~--lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~l 204 (722)
T KOG0532|consen 131 NQLSH--LPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DL 204 (722)
T ss_pred chhhc--CChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hC
Confidence 99854 556677665 999999999998 6787776 88899999999998 77888999999999999999998 66
Q ss_pred CcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcC---CCCCCEEeccCCc
Q 013710 255 PSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSD---LKKLRYLNLQNNN 321 (437)
Q Consensus 255 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~---l~~L~~L~L~~N~ 321 (437)
|+.+..+ .|..||++.|++. .+|..|.++..|++|-|.+|.++ ..|..+.. ..=.++|+..-++
T Consensus 205 p~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 205 PEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred CHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 7777754 5888999999998 78899999999999999999998 55554432 2234677877774
No 29
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.29 E-value=1.9e-13 Score=125.58 Aligned_cols=235 Identities=18% Similarity=0.229 Sum_probs=171.8
Q ss_pred hhhccccccccCCCCC---ccccCCCCCCCCeeEEEccCCCCCCc----CC------hhhhCCCCCCCEEecccCCCCCC
Q 013710 70 IRALQSLNIPSKSACS---LYKCDSSKPFSHLLSLRLSNCSDDIS----LS------STALKSLSTLQNLTFFNCPIAPI 136 (437)
Q Consensus 70 ~~~L~~l~~~~~~~c~---~~~~~~~~~l~~L~~L~Ls~n~~~~~----~~------~~~~~~l~~L~~L~L~~n~l~~i 136 (437)
+..+..++++++.+-. ...|..+.+.++|+..++++- +++. ++ ..++...++|++||||.|.|+.-
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 3457788888866644 456677777789999999854 3332 22 13567778999999999998642
Q ss_pred CCCchhhhccccccccccCCCCChhhhcCCCCCCEEEeecCCCCCCc---hhH---------hhcCCcCccEEEeeCCcc
Q 013710 137 HFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTVTNVPVNASG---LYV---------IIGNMHKLRSVTISNANV 204 (437)
Q Consensus 137 ~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~---~~~---------~l~~l~~L~~L~L~~n~l 204 (437)
.+ ..-+..+..+..|++|.|.+|.+...+ +.. ....-++|+++...+|++
T Consensus 108 ----g~--------------~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 108 ----GI--------------RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred ----ch--------------HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 11 111235667899999999999987543 111 133346899999999998
Q ss_pred cccCCcccc------cCccEEEccCCcCCCC----CChhccCCCCCcEEEccCCCCCCC----CCcccCCCcccceeecc
Q 013710 205 TGYIPKHLH------SNLTHVDFSGNQLKGK----IPTSITLLENLQHLNLSSNGLNGE----IPSSIGDLIALKNVSLA 270 (437)
Q Consensus 205 ~~~~~~~~~------~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~ 270 (437)
.......+. +.|+.+.+++|.|... +...|..+++|+.|||..|.++.. +...+..+++|+.|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 754433332 7899999999998632 334678999999999999998732 33567788999999999
Q ss_pred cccCCCCCcccc-----CCCCCCCeeeccCCcCCCc----chhhhcCCCCCCEEeccCCcCC
Q 013710 271 SNSLSGSVPESM-----ASLTDMVHLDLSSNQLNGT----IPRFFSDLKKLRYLNLQNNNFH 323 (437)
Q Consensus 271 ~n~l~~~~~~~l-----~~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~L~~N~l~ 323 (437)
+|.+.......+ ...++|++|.|.+|.|+.. +...+...+.|+.|+|++|++.
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 999986543332 2468999999999999842 3345566899999999999994
No 30
>PLN03150 hypothetical protein; Provisional
Probab=99.25 E-value=3.2e-11 Score=125.62 Aligned_cols=108 Identities=33% Similarity=0.576 Sum_probs=100.5
Q ss_pred ccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccC
Q 013710 216 LTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSS 295 (437)
Q Consensus 216 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 295 (437)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++++.+|..++++++|++|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCcchhhhcCC-CCCCEEeccCCcCC
Q 013710 296 NQLNGTIPRFFSDL-KKLRYLNLQNNNFH 323 (437)
Q Consensus 296 N~l~~~~~~~l~~l-~~L~~L~L~~N~l~ 323 (437)
|++.+.+|..+... .++..+++.+|...
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccc
Confidence 99999999888764 46778999988644
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.4e-12 Score=123.12 Aligned_cols=211 Identities=20% Similarity=0.230 Sum_probs=152.6
Q ss_pred hCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCEEEeecCCCCCCc-hhHhhcCCcCcc
Q 013710 117 LKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTVTNVPVNASG-LYVIIGNMHKLR 195 (437)
Q Consensus 117 ~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~-~~~~l~~l~~L~ 195 (437)
-.++.+|+++.|.++.+... +. ......+++++.|||+.|-+.... +......+++|+
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~--~~-------------------~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le 175 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDA--GI-------------------EEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLE 175 (505)
T ss_pred hhhHHhhhheeecCcccccc--ch-------------------hhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccch
Confidence 35678899999999987532 10 024568899999999999876443 556678899999
Q ss_pred EEEeeCCcccccCCcc---cccCccEEEccCCcCCCC-CChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeeccc
Q 013710 196 SVTISNANVTGYIPKH---LHSNLTHVDFSGNQLKGK-IPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLAS 271 (437)
Q Consensus 196 ~L~L~~n~l~~~~~~~---~~~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 271 (437)
.|+++.|++.--.... ..+.|+.|.|+.|.++.. +......+++|+.|+|..|............+..|+.|||++
T Consensus 176 ~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~ 255 (505)
T KOG3207|consen 176 NLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSN 255 (505)
T ss_pred hcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccC
Confidence 9999999987322222 228999999999999732 222445789999999999953323334455678899999999
Q ss_pred ccCCCCC-ccccCCCCCCCeeeccCCcCCCcc-hhh-----hcCCCCCCEEeccCCcCCCCC-CCCcccCCCCCEEEecC
Q 013710 272 NSLSGSV-PESMASLTDMVHLDLSSNQLNGTI-PRF-----FSDLKKLRYLNLQNNNFHGVL-PFNASILEKLQVFKVGG 343 (437)
Q Consensus 272 n~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~-~~~-----l~~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~l~~ 343 (437)
|++.+.. ....+.++.|+.|+++.+.+...- |+. ...+++|++|+++.|++.+.- -..+..+.+|+.|.+..
T Consensus 256 N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 256 NNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred CcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 9987431 245678899999999999987432 222 345789999999999997431 13345566777777777
Q ss_pred CCCCC
Q 013710 344 NTNLC 348 (437)
Q Consensus 344 N~~~c 348 (437)
|+..-
T Consensus 336 n~ln~ 340 (505)
T KOG3207|consen 336 NYLNK 340 (505)
T ss_pred ccccc
Confidence 77544
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.20 E-value=3e-12 Score=115.51 Aligned_cols=129 Identities=25% Similarity=0.321 Sum_probs=94.2
Q ss_pred cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeec
Q 013710 214 SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDL 293 (437)
Q Consensus 214 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 293 (437)
..|+++||++|.|+ .+.++..-.+.++.|++++|.+... +.+..+.+|+.|||++|.++ ....+-..+-+.++|.|
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 67788888888887 5666777778888888888888633 34777888888888888877 44455556777888888
Q ss_pred cCCcCCCcchhhhcCCCCCCEEeccCCcCCCC-CCCCcccCCCCCEEEecCCCCCC
Q 013710 294 SSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGV-LPFNASILEKLQVFKVGGNTNLC 348 (437)
Q Consensus 294 ~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L~l~~N~~~c 348 (437)
++|.|... ..+..+-+|..||+++|+|... ....+++++-|+.+.+.+||..-
T Consensus 360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 88887632 3466677788888888887743 22456778888888888888543
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.18 E-value=3.2e-11 Score=119.65 Aligned_cols=176 Identities=28% Similarity=0.480 Sum_probs=143.4
Q ss_pred cCCCCCCEEEeecCCCCCCchhHhhcCCc-CccEEEeeCCcccccC-CcccccCccEEEccCCcCCCCCChhccCCCCCc
Q 013710 164 SRFVNLTDLTVTNVPVNASGLYVIIGNMH-KLRSVTISNANVTGYI-PKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQ 241 (437)
Q Consensus 164 ~~l~~L~~L~ls~n~l~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 241 (437)
..++.++.|++.+|.+.. ++.....+. +|+.|++++|.+.... +....++|+.|++++|++. .++......++|+
T Consensus 113 ~~~~~l~~L~l~~n~i~~--i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~ 189 (394)
T COG4886 113 LELTNLTSLDLDNNNITD--IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLN 189 (394)
T ss_pred hcccceeEEecCCccccc--CccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh-hhhhhhhhhhhhh
Confidence 345789999999999864 444455664 9999999999998431 3334499999999999998 5665555889999
Q ss_pred EEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCc
Q 013710 242 HLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNN 321 (437)
Q Consensus 242 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~ 321 (437)
.|++++|++. .+|........|++|.+++|.+. ..+..+..+.++..+.+.+|++.. .+..+..++.+++|++++|+
T Consensus 190 ~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 190 NLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred heeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceecccccc
Confidence 9999999998 66665566677999999999654 466778888999999999999984 36778889999999999999
Q ss_pred CCCCCCCCcccCCCCCEEEecCCCCC
Q 013710 322 FHGVLPFNASILEKLQVFKVGGNTNL 347 (437)
Q Consensus 322 l~~~~~~~l~~l~~L~~L~l~~N~~~ 347 (437)
++.... +..+.+++.+++++|...
T Consensus 267 i~~i~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 267 ISSISS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred cccccc--ccccCccCEEeccCcccc
Confidence 995433 788999999999998764
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=1.1e-11 Score=106.76 Aligned_cols=16 Identities=44% Similarity=0.571 Sum_probs=4.5
Q ss_pred CCCCCCEEeccCCcCC
Q 013710 308 DLKKLRYLNLQNNNFH 323 (437)
Q Consensus 308 ~l~~L~~L~L~~N~l~ 323 (437)
.+++|++|++.+|.++
T Consensus 111 ~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 111 SLPKLRVLSLEGNPVC 126 (175)
T ss_dssp G-TT--EEE-TT-GGG
T ss_pred cCCCcceeeccCCccc
Confidence 3344444444444443
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.14 E-value=1.5e-11 Score=111.10 Aligned_cols=127 Identities=28% Similarity=0.343 Sum_probs=73.4
Q ss_pred cCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeec
Q 013710 192 HKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSL 269 (437)
Q Consensus 192 ~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 269 (437)
..|+++||++|.|+ .+.++.. +.++.|++++|.|... +.+..+.+|+.|||++|.++ .+...-.++.+++.|.|
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 34566666666665 3333333 6666666666666522 23566666677777776665 33333344566666677
Q ss_pred ccccCCCCCccccCCCCCCCeeeccCCcCCCcc-hhhhcCCCCCCEEeccCCcCCC
Q 013710 270 ASNSLSGSVPESMASLTDMVHLDLSSNQLNGTI-PRFFSDLKKLRYLNLQNNNFHG 324 (437)
Q Consensus 270 ~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~~ 324 (437)
++|.+.. -..+..+-+|..||+++|+|.... ...++++|-|+.+.|.+|.+.+
T Consensus 360 a~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 360 AQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 7766652 133555666667777777665321 2345666667777777776664
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=1.3e-10 Score=100.34 Aligned_cols=110 Identities=28% Similarity=0.377 Sum_probs=42.0
Q ss_pred ccCCCCCcEEEccCCCCCCCCCcccC-CCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCC
Q 013710 234 ITLLENLQHLNLSSNGLNGEIPSSIG-DLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKL 312 (437)
Q Consensus 234 l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L 312 (437)
+.+..++++|+|++|.|+. + +.++ .+.+|+.|++++|.|+. + +.+..+++|++|++++|+|+.........+++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 4455678999999999973 3 4565 57899999999999984 3 357788999999999999995543333468999
Q ss_pred CEEeccCCcCCCCC-CCCcccCCCCCEEEecCCCCC
Q 013710 313 RYLNLQNNNFHGVL-PFNASILEKLQVFKVGGNTNL 347 (437)
Q Consensus 313 ~~L~L~~N~l~~~~-~~~l~~l~~L~~L~l~~N~~~ 347 (437)
++|++++|+|.+.. -..+..+++|+.|++.+||..
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 99999999998542 245678999999999999964
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.03 E-value=4.9e-11 Score=118.80 Aligned_cols=221 Identities=22% Similarity=0.252 Sum_probs=142.1
Q ss_pred CCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCE
Q 013710 92 SKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTD 171 (437)
Q Consensus 92 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~ 171 (437)
+..+.+|++|++.+|.+... . ..+..+.+|++|++++|.|+.+ ..+..+..|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i-~-~~l~~~~~L~~L~ls~N~I~~i------------------------~~l~~l~~L~~ 144 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKI-E-NLLSSLVNLQVLDLSFNKITKL------------------------EGLSTLTLLKE 144 (414)
T ss_pred cccccceeeeeccccchhhc-c-cchhhhhcchheeccccccccc------------------------cchhhccchhh
Confidence 55567788888888777533 2 1267778888888888877654 12334555888
Q ss_pred EEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCc--ccccCccEEEccCCcCCCCCChhccCCCCCcEEEccCCC
Q 013710 172 LTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPK--HLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNG 249 (437)
Q Consensus 172 L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~--~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~ 249 (437)
|++++|.+... ..+..+.+|+.+++++|++...-+. .-..+++.+++.+|.+... ..+..+..+..+++..|.
T Consensus 145 L~l~~N~i~~~---~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 145 LNLSGNLISDI---SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNK 219 (414)
T ss_pred heeccCcchhc---cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccc
Confidence 88888887543 2345577788888888887754441 3337777788888877632 334445555556777777
Q ss_pred CCCCCCcccCCCcc--cceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCC--
Q 013710 250 LNGEIPSSIGDLIA--LKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGV-- 325 (437)
Q Consensus 250 l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~-- 325 (437)
++.. ..+..+.. |+.+++++|++. ..+..+..+..+..|++.+|++... ..+.....+..+....|.+...
T Consensus 220 i~~~--~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 294 (414)
T KOG0531|consen 220 ISKL--EGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEA 294 (414)
T ss_pred ceec--cCcccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhh
Confidence 7633 22333343 788888888887 3335566778888888888888743 2345556667777777766521
Q ss_pred -CCC-CcccCCCCCEEEecCCCCCC
Q 013710 326 -LPF-NASILEKLQVFKVGGNTNLC 348 (437)
Q Consensus 326 -~~~-~l~~l~~L~~L~l~~N~~~c 348 (437)
... .......++.+.+.+|+..-
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 295 ISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred hhccccccccccccccccccCcccc
Confidence 111 13556677788888887554
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.96 E-value=4.8e-11 Score=118.88 Aligned_cols=217 Identities=22% Similarity=0.257 Sum_probs=153.3
Q ss_pred CCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCEEE
Q 013710 94 PFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDLT 173 (437)
Q Consensus 94 ~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L~ 173 (437)
.+..++.+++..|.+... . ..+..+.+|+.|++.+|+|..+ . ..+..+.+|++|+
T Consensus 70 ~l~~l~~l~l~~n~i~~~-~-~~l~~~~~l~~l~l~~n~i~~i--~---------------------~~l~~~~~L~~L~ 124 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKI-L-NHLSKLKSLEALDLYDNKIEKI--E---------------------NLLSSLVNLQVLD 124 (414)
T ss_pred HhHhHHhhccchhhhhhh-h-cccccccceeeeeccccchhhc--c---------------------cchhhhhcchhee
Confidence 456778888888887542 1 4588899999999999998654 0 0155788999999
Q ss_pred eecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccccCccEEEccCCcCCCCCC-hhccCCCCCcEEEccCCCCCC
Q 013710 174 VTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIP-TSITLLENLQHLNLSSNGLNG 252 (437)
Q Consensus 174 ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~ 252 (437)
+++|.|... ..+..+..|+.|++++|.+...--......|+.+++++|.+...-. . ...+.+++.+++.+|.+..
T Consensus 125 ls~N~I~~i---~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 125 LSFNKITKL---EGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred ccccccccc---cchhhccchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence 999999754 3366677799999999999843332224889999999999884433 1 4788899999999998863
Q ss_pred CCCcccCCCcccceeecccccCCCCCccccCCCC--CCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCc
Q 013710 253 EIPSSIGDLIALKNVSLASNSLSGSVPESMASLT--DMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNA 330 (437)
Q Consensus 253 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~--~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l 330 (437)
. ..+..+..+..+++..|.+...- .+..+. +|+.+++++|.+. ..+..+..+..+..|++.+|++...- .+
T Consensus 201 i--~~~~~~~~l~~~~l~~n~i~~~~--~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~--~~ 273 (414)
T KOG0531|consen 201 I--EGLDLLKKLVLLSLLDNKISKLE--GLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE--GL 273 (414)
T ss_pred c--cchHHHHHHHHhhcccccceecc--CcccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc--cc
Confidence 2 44556666777788888887332 122223 3899999999997 33355677888999999999887432 23
Q ss_pred ccCCCCCEEEecCCCC
Q 013710 331 SILEKLQVFKVGGNTN 346 (437)
Q Consensus 331 ~~l~~L~~L~l~~N~~ 346 (437)
.....+..+....|+.
T Consensus 274 ~~~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 274 ERLPKLSELWLNDNKL 289 (414)
T ss_pred cccchHHHhccCcchh
Confidence 3444555555555553
No 39
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.94 E-value=1.4e-11 Score=122.83 Aligned_cols=131 Identities=30% Similarity=0.313 Sum_probs=77.8
Q ss_pred cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeec
Q 013710 214 SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDL 293 (437)
Q Consensus 214 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 293 (437)
..|...+.++|.+. ....++.-++.|+.|+|++|++++. +.+..+++|++|||++|.+. .+|..-..-.+|+.|.+
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeee
Confidence 44555566666665 4555666666677777777776643 35666677777777777666 33332211123777777
Q ss_pred cCCcCCCcchhhhcCCCCCCEEeccCCcCCCCC-CCCcccCCCCCEEEecCCCCCCcC
Q 013710 294 SSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVL-PFNASILEKLQVFKVGGNTNLCYN 350 (437)
Q Consensus 294 ~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~l~~N~~~c~~ 350 (437)
++|.++.. ..+.++.+|+.||+++|-|.+.- -.-++.+..|+.|+|.|||.-|..
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 77776632 33566677777777777665421 112355666777777777766643
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.83 E-value=1.9e-09 Score=76.48 Aligned_cols=58 Identities=43% Similarity=0.709 Sum_probs=25.0
Q ss_pred cceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCc
Q 013710 264 LKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNN 321 (437)
Q Consensus 264 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~ 321 (437)
|++|++++|+++...+..|.++++|++|++++|+++...+..|.++++|++|++++|+
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4444444444443333344444444444444444443333444444444444444443
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.79 E-value=2.9e-09 Score=75.51 Aligned_cols=58 Identities=34% Similarity=0.518 Sum_probs=25.9
Q ss_pred ccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeeccccc
Q 013710 216 LTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNS 273 (437)
Q Consensus 216 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 273 (437)
|++|++++|+++...+..|.++++|++|++++|.++...++.|.++++|++|++++|+
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4444444444443333344444444444444444443333444444444444444443
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.6e-10 Score=103.05 Aligned_cols=59 Identities=20% Similarity=0.242 Sum_probs=28.1
Q ss_pred CCcccceeecccc-cCCCCCccccCCCCCCCeeeccCCcCCCcchhh---hcCCCCCCEEeccCC
Q 013710 260 DLIALKNVSLASN-SLSGSVPESMASLTDMVHLDLSSNQLNGTIPRF---FSDLKKLRYLNLQNN 320 (437)
Q Consensus 260 ~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~---l~~l~~L~~L~L~~N 320 (437)
.+++|.+|||++| .++......|.+++.|++|.|+.|.. ++|.. +...++|.+||+.++
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 3455555555543 23322333344455555555555542 22322 344556666666554
No 43
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.68 E-value=4.2e-09 Score=94.18 Aligned_cols=241 Identities=15% Similarity=0.138 Sum_probs=152.7
Q ss_pred CCCeeEEEccCCCCCCcCC---hhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCE
Q 013710 95 FSHLLSLRLSNCSDDISLS---STALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTD 171 (437)
Q Consensus 95 l~~L~~L~Ls~n~~~~~~~---~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~ 171 (437)
+..+++++||+|.+..+.. ...+.+-.+|+..+++.-..+.. -..+...+.. --..+-++++|+.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~--kde~~~~L~~----------Ll~aLlkcp~l~~ 96 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRD--KDELYSNLVM----------LLKALLKCPRLQK 96 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhccc--HHHHHHHHHH----------HHHHHhcCCccee
Confidence 3467888888887754321 13455566777777665432211 1112111111 1124568899999
Q ss_pred EEeecCCCCCCc---hhHhhcCCcCccEEEeeCCcccccCCc----ccc-----------cCccEEEccCCcCCCCCC--
Q 013710 172 LTVTNVPVNASG---LYVIIGNMHKLRSVTISNANVTGYIPK----HLH-----------SNLTHVDFSGNQLKGKIP-- 231 (437)
Q Consensus 172 L~ls~n~l~~~~---~~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~-----------~~L~~L~Ls~n~l~~~~~-- 231 (437)
.++|+|.+.... +.+.+++-+.|++|.|++|++...... .++ +.|+......|++.....
T Consensus 97 v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 97 VDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred eeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHH
Confidence 999999987553 445677888999999999987632211 111 678999999998863211
Q ss_pred --hhccCCCCCcEEEccCCCCCCCCC-----cccCCCcccceeecccccCCCC----CccccCCCCCCCeeeccCCcCCC
Q 013710 232 --TSITLLENLQHLNLSSNGLNGEIP-----SSIGDLIALKNVSLASNSLSGS----VPESMASLTDMVHLDLSSNQLNG 300 (437)
Q Consensus 232 --~~l~~l~~L~~L~L~~n~l~~~~~-----~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~ 300 (437)
..+..-.+|+++.+.+|.|.-... ..+..+.+|+.||++.|.++.. +...+..++.|+.|.+.+|-+..
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 123344689999999998863211 1234568899999999988743 34455677889999999998875
Q ss_pred cchhhh------cCCCCCCEEeccCCcCCCCCCCC-----c--ccCCCCCEEEecCCCCC
Q 013710 301 TIPRFF------SDLKKLRYLNLQNNNFHGVLPFN-----A--SILEKLQVFKVGGNTNL 347 (437)
Q Consensus 301 ~~~~~l------~~l~~L~~L~L~~N~l~~~~~~~-----l--~~l~~L~~L~l~~N~~~ 347 (437)
.....+ ...++|..|...+|.+.+..-.. + ..++-|..|.+.||++.
T Consensus 257 ~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 257 EGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred ccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 443322 13578899999999876532221 1 34556666677778754
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.6e-09 Score=98.07 Aligned_cols=176 Identities=21% Similarity=0.235 Sum_probs=131.9
Q ss_pred CCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCc-CCCC-CChhccCCCCCcE
Q 013710 167 VNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQ-LKGK-IPTSITLLENLQH 242 (437)
Q Consensus 167 ~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~-l~~~-~~~~l~~l~~L~~ 242 (437)
..|++||+++..++...+...+..+.+|+.|.+.++++.+.+...+. .+|+.|+++.+. ++.. ..-.+..++.|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 46999999999998777777889999999999999999988777777 899999999864 4321 1124678999999
Q ss_pred EEccCCCCCCCCCcc-cC-CCcccceeecccccCC---CCCccccCCCCCCCeeeccCCc-CCCcchhhhcCCCCCCEEe
Q 013710 243 LNLSSNGLNGEIPSS-IG-DLIALKNVSLASNSLS---GSVPESMASLTDMVHLDLSSNQ-LNGTIPRFFSDLKKLRYLN 316 (437)
Q Consensus 243 L~L~~n~l~~~~~~~-l~-~l~~L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~l~~l~~L~~L~ 316 (437)
|++++|.+....... .. --.+|+.|++++++-. ..+......+++|.+|||++|. ++...-..|.+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 999999886432211 11 1367899999987532 1223334578999999999875 4555556778899999999
Q ss_pred ccCCcCCCCCCC---CcccCCCCCEEEecCC
Q 013710 317 LQNNNFHGVLPF---NASILEKLQVFKVGGN 344 (437)
Q Consensus 317 L~~N~l~~~~~~---~l~~l~~L~~L~l~~N 344 (437)
++.|.. .+|. .+...++|.+||+.|+
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 999863 3343 3467889999998886
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=3.9e-08 Score=89.13 Aligned_cols=223 Identities=15% Similarity=0.134 Sum_probs=114.8
Q ss_pred CeeEEEccCCCCCCcCChhhhC-CCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCEEEee
Q 013710 97 HLLSLRLSNCSDDISLSSTALK-SLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTVT 175 (437)
Q Consensus 97 ~L~~L~Ls~n~~~~~~~~~~~~-~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L~ls 175 (437)
-++-|.+.++.+...-....|+ ..+.+++|||.+|.|+.. ++ -+.++.+++.|+.|+++
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdW---se-----------------I~~ile~lP~l~~LNls 105 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDW---SE-----------------IGAILEQLPALTTLNLS 105 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccH---HH-----------------HHHHHhcCccceEeecc
Confidence 3445566666664333223343 456777777777777543 11 12356677777777777
Q ss_pred cCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc---cCccEEEccCCcCCCCC--ChhccC-CCCCcEEEccCCC
Q 013710 176 NVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH---SNLTHVDFSGNQLKGKI--PTSITL-LENLQHLNLSSNG 249 (437)
Q Consensus 176 ~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~---~~L~~L~Ls~n~l~~~~--~~~l~~-l~~L~~L~L~~n~ 249 (437)
.|++... +...-..+.+|++|.|.+..+.......+. +.+++|+++.|.+.... .+.... -+.++.|++..|.
T Consensus 106 ~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~ 184 (418)
T KOG2982|consen 106 CNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCL 184 (418)
T ss_pred CCcCCCc-cccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcH
Confidence 7776533 111002335677777777666543333332 45566666666332110 000111 1123333332221
Q ss_pred CCC--CCCcccCCCcccceeecccccCCCC-CccccCCCCCCCeeeccCCcCCCcc-hhhhcCCCCCCEEeccCCcCCCC
Q 013710 250 LNG--EIPSSIGDLIALKNVSLASNSLSGS-VPESMASLTDMVHLDLSSNQLNGTI-PRFFSDLKKLRYLNLQNNNFHGV 325 (437)
Q Consensus 250 l~~--~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~ 325 (437)
... .....-.-++++..+.+..|.+... ....+..++.+--|+|+.|+|...- -+.+.+++.|+.|.+.+|.+.+.
T Consensus 185 ~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 185 EQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred HHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 110 0000011235566677777766533 2233445566777888888886432 25677788888888888877643
Q ss_pred CCC------CcccCCCCCEEE
Q 013710 326 LPF------NASILEKLQVFK 340 (437)
Q Consensus 326 ~~~------~l~~l~~L~~L~ 340 (437)
+.. .++.+++++.|+
T Consensus 265 l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 265 LRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred ccCCcceEEEEeeccceEEec
Confidence 322 124566666654
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.49 E-value=2.3e-08 Score=89.57 Aligned_cols=235 Identities=19% Similarity=0.239 Sum_probs=164.1
Q ss_pred hhhccccccccCCCCC---ccccCCCCCCCCeeEEEccCCCCCCc----C------ChhhhCCCCCCCEEecccCCCCCC
Q 013710 70 IRALQSLNIPSKSACS---LYKCDSSKPFSHLLSLRLSNCSDDIS----L------SSTALKSLSTLQNLTFFNCPIAPI 136 (437)
Q Consensus 70 ~~~L~~l~~~~~~~c~---~~~~~~~~~l~~L~~L~Ls~n~~~~~----~------~~~~~~~l~~L~~L~L~~n~l~~i 136 (437)
+..+..++++++.+-. ...|..+.+-.+|+..+++.-- ++. + -..++.++++|+..+||.|.|+.
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~- 106 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS- 106 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc-
Confidence 3446677888866544 5577777777899999998542 222 1 12467889999999999999864
Q ss_pred CCCchhhhccccccccccCCCCChhhhcCCCCCCEEEeecCCCCCCc---hhHh---------hcCCcCccEEEeeCCcc
Q 013710 137 HFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTVTNVPVNASG---LYVI---------IGNMHKLRSVTISNANV 204 (437)
Q Consensus 137 ~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~---~~~~---------l~~l~~L~~L~L~~n~l 204 (437)
.+|+.+ +..++.-..|++|.+++|.+...+ +... ..+-+.|++.....|++
T Consensus 107 ~~~e~L-----------------~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 107 EFPEEL-----------------GDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred ccchHH-----------------HHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 233322 346778899999999999886432 2211 23447899999999998
Q ss_pred cccCCcccc-------cCccEEEccCCcCCCCCCh-----hccCCCCCcEEEccCCCCCCC----CCcccCCCcccceee
Q 013710 205 TGYIPKHLH-------SNLTHVDFSGNQLKGKIPT-----SITLLENLQHLNLSSNGLNGE----IPSSIGDLIALKNVS 268 (437)
Q Consensus 205 ~~~~~~~~~-------~~L~~L~Ls~n~l~~~~~~-----~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~ 268 (437)
. ..+.... .+|+++.+.+|.|....-. .+..+.+|+.|||..|.++.. +...+..++.|+.|.
T Consensus 170 e-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 170 E-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred c-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 7 3443322 6899999999998733111 234578999999999998732 234566778899999
Q ss_pred cccccCCCCCccc----cC--CCCCCCeeeccCCcCCCcc------hhh-hcCCCCCCEEeccCCcCCC
Q 013710 269 LASNSLSGSVPES----MA--SLTDMVHLDLSSNQLNGTI------PRF-FSDLKKLRYLNLQNNNFHG 324 (437)
Q Consensus 269 L~~n~l~~~~~~~----l~--~l~~L~~L~L~~N~l~~~~------~~~-l~~l~~L~~L~L~~N~l~~ 324 (437)
+..|-++...... |. ..++|+.|.+.+|.+.+.. +.. -..++-|..|.+.+|++..
T Consensus 249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred ccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 9999888543322 21 3588999999999876422 111 1346778888999999873
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.40 E-value=9.8e-09 Score=82.65 Aligned_cols=133 Identities=26% Similarity=0.333 Sum_probs=83.5
Q ss_pred CccEEEccCCcCCCCCCh---hccCCCCCcEEEccCCCCCCCCCccc-CCCcccceeecccccCCCCCccccCCCCCCCe
Q 013710 215 NLTHVDFSGNQLKGKIPT---SITLLENLQHLNLSSNGLNGEIPSSI-GDLIALKNVSLASNSLSGSVPESMASLTDMVH 290 (437)
Q Consensus 215 ~L~~L~Ls~n~l~~~~~~---~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 290 (437)
.+..++|+.+++- .+++ .+.....|+..+|++|.+. ..|+.| ...+.++.|++++|.|+ .+|..+..++.|+.
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 3445566666554 2333 3344556666778888777 344444 34457788888888887 56667888888888
Q ss_pred eeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCcc
Q 013710 291 LDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNHT 352 (437)
Q Consensus 291 L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~~ 352 (437)
|+++.|.+. ..|..+..+.+|..|+..+|.+. .++..+..-...-..++++++|--.|..
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcc
Confidence 888888887 55666666778888888888776 4443332222223345566666655543
No 48
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.39 E-value=4.2e-07 Score=97.44 Aligned_cols=242 Identities=20% Similarity=0.220 Sum_probs=131.1
Q ss_pred ccccccccCCC-CCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccc
Q 013710 73 LQSLNIPSKSA-CSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSC 151 (437)
Q Consensus 73 L~~l~~~~~~~-c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~ 151 (437)
|++|-+..+.. -..+..+.|..++.|+.|||++|.-.+.+| ..++.+-+||+|++++..+.. +|..+. +|..
T Consensus 547 L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP-~~I~~Li~LryL~L~~t~I~~--LP~~l~----~Lk~ 619 (889)
T KOG4658|consen 547 LRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP-SSIGELVHLRYLDLSDTGISH--LPSGLG----NLKK 619 (889)
T ss_pred cceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC-hHHhhhhhhhcccccCCCccc--cchHHH----HHHh
Confidence 55554444332 113444557789999999999987767777 789999999999999999873 466543 2222
Q ss_pred cccCC--------CCChhhhcCCCCCCEEEeecCCCCCC-chhHhhcCCcCccEEEeeCCcccccCCcccc-----cCcc
Q 013710 152 IHSLH--------HLSGVFLSRFVNLTDLTVTNVPVNAS-GLYVIIGNMHKLRSVTISNANVTGYIPKHLH-----SNLT 217 (437)
Q Consensus 152 l~~l~--------~l~~~~~~~l~~L~~L~ls~n~l~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-----~~L~ 217 (437)
+..|+ .+ ..+...+.+|++|.+..-..... .....+.++.+|+.+........ .+-.... ...+
T Consensus 620 L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~-~~e~l~~~~~L~~~~~ 697 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVL-LLEDLLGMTRLRSLLQ 697 (889)
T ss_pred hheeccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhH-hHhhhhhhHHHHHHhH
Confidence 22221 12 23445577777777766542211 13334455556665555433320 0011111 2223
Q ss_pred EEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCC------CcccceeecccccCCCCCccccCCCCCCCee
Q 013710 218 HVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGD------LIALKNVSLASNSLSGSVPESMASLTDMVHL 291 (437)
Q Consensus 218 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 291 (437)
.+.+.++... .....+..+.+|+.|.+.++.+.......... ++++..+...++..- ..+.+....++|+.|
T Consensus 698 ~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l 775 (889)
T KOG4658|consen 698 SLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSL 775 (889)
T ss_pred hhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEE
Confidence 3333333332 34456677888888888888775322222111 122322322232211 122222344788888
Q ss_pred eccCCcCCCcchhhhcCCCCCCEEeccCCcCCCC
Q 013710 292 DLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGV 325 (437)
Q Consensus 292 ~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 325 (437)
.+..+.....+......+..+..+-+..+.+.+.
T Consensus 776 ~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l 809 (889)
T KOG4658|consen 776 SLVSCRLLEDIIPKLKALLELKELILPFNKLEGL 809 (889)
T ss_pred EEecccccccCCCHHHHhhhcccEEecccccccc
Confidence 8887776655555555555666555555555543
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.35 E-value=9.1e-09 Score=103.28 Aligned_cols=125 Identities=26% Similarity=0.310 Sum_probs=85.3
Q ss_pred CccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecc
Q 013710 193 KLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLA 270 (437)
Q Consensus 193 ~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 270 (437)
+|...+.++|++. .+...+. +.++.|+|++|+++.. ..+..+++|++|||++|.+. .+|..-..-.+|+.|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeeec
Confidence 5667777777776 4444444 7788888888888744 37778888888888888887 444322222348888888
Q ss_pred cccCCCCCccccCCCCCCCeeeccCCcCCCc-chhhhcCCCCCCEEeccCCcCC
Q 013710 271 SNSLSGSVPESMASLTDMVHLDLSSNQLNGT-IPRFFSDLKKLRYLNLQNNNFH 323 (437)
Q Consensus 271 ~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L~L~~N~l~ 323 (437)
+|.++.. ..+.++.+|+.|||++|-|.+. --..++.+..|+.|+|.||.+-
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8887732 3466778888888888877642 1233555667888888888764
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.34 E-value=4e-08 Score=79.16 Aligned_cols=105 Identities=21% Similarity=0.351 Sum_probs=51.1
Q ss_pred CCCEEEeecCCCCCCc-hhHhhcCCcCccEEEeeCCcccccCCcccc---cCccEEEccCCcCCCCCChhccCCCCCcEE
Q 013710 168 NLTDLTVTNVPVNASG-LYVIIGNMHKLRSVTISNANVTGYIPKHLH---SNLTHVDFSGNQLKGKIPTSITLLENLQHL 243 (437)
Q Consensus 168 ~L~~L~ls~n~l~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~---~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 243 (437)
.+..++|+.|++.... ....+.....|+..+|++|.+. .+|..+. +.++.|+|++|.|. .+|..+..++.|+.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 4455666666553211 2222333445555566666665 3444443 34555555555554 344445555555555
Q ss_pred EccCCCCCCCCCcccCCCcccceeecccccCC
Q 013710 244 NLSSNGLNGEIPSSIGDLIALKNVSLASNSLS 275 (437)
Q Consensus 244 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 275 (437)
+++.|.+. ..|..+..+.+|-.|+..+|.+.
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence 55555554 33444444445555555444443
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.34 E-value=1.8e-07 Score=84.99 Aligned_cols=185 Identities=16% Similarity=0.132 Sum_probs=126.0
Q ss_pred hcCCCCCCEEEeecCCCCCCc-hhHhhcCCcCccEEEeeCCcccccCCcc-cc-cCccEEEccCCcCCCC-CChhccCCC
Q 013710 163 LSRFVNLTDLTVTNVPVNASG-LYVIIGNMHKLRSVTISNANVTGYIPKH-LH-SNLTHVDFSGNQLKGK-IPTSITLLE 238 (437)
Q Consensus 163 ~~~l~~L~~L~ls~n~l~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~-~~L~~L~Ls~n~l~~~-~~~~l~~l~ 238 (437)
-.....++.+|+.+|.+++.. +...+.+++.|+.|+++.|.+...+... +. .+|+.|-|.+..+.-. ....+..++
T Consensus 67 ~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 67 GSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 346678999999999998765 7778899999999999999988554433 33 8999999998877532 334567888
Q ss_pred CCcEEEccCCCCCCC--CCcccCCC-cccceeecccccCCC--CCccccCCCCCCCeeeccCCcCCCc-chhhhcCCCCC
Q 013710 239 NLQHLNLSSNGLNGE--IPSSIGDL-IALKNVSLASNSLSG--SVPESMASLTDMVHLDLSSNQLNGT-IPRFFSDLKKL 312 (437)
Q Consensus 239 ~L~~L~L~~n~l~~~--~~~~l~~l-~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L 312 (437)
.+++|+++.|.+... ..+..... +.+++|....|.... ..-..-..++++..+.+..|.+... ..+.+..++.+
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~ 226 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSL 226 (418)
T ss_pred hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcc
Confidence 999999999854311 11111111 234444444443220 0001112347788888888877643 23456678888
Q ss_pred CEEeccCCcCCCCC-CCCcccCCCCCEEEecCCCCC
Q 013710 313 RYLNLQNNNFHGVL-PFNASILEKLQVFKVGGNTNL 347 (437)
Q Consensus 313 ~~L~L~~N~l~~~~-~~~l~~l~~L~~L~l~~N~~~ 347 (437)
..|+|+.|+|.... -+.+..+++|..|.+.+||..
T Consensus 227 ~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 227 SCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 89999999998542 245678899999999999854
No 52
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.19 E-value=1e-06 Score=94.47 Aligned_cols=128 Identities=25% Similarity=0.398 Sum_probs=86.4
Q ss_pred cCccEEEeeCCcccccCCcccc-cCccEEEccCCc--CCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceee
Q 013710 192 HKLRSVTISNANVTGYIPKHLH-SNLTHVDFSGNQ--LKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVS 268 (437)
Q Consensus 192 ~~L~~L~L~~n~l~~~~~~~~~-~~L~~L~Ls~n~--l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 268 (437)
...+...+-+|.+.. ++.... +.|++|-+.+|. +.....+.|..++.|+.|||++|.--+.+|+.++.+.+|++|+
T Consensus 523 ~~~rr~s~~~~~~~~-~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEH-IAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred hheeEEEEeccchhh-ccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 456666666666652 333322 567777777775 4433344566777777777777755557777777777777777
Q ss_pred cccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCc
Q 013710 269 LASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNN 321 (437)
Q Consensus 269 L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~ 321 (437)
+++..+. .+|..++++..|.+||+..+.....++.....+++|++|.+..-.
T Consensus 602 L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 602 LSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred ccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 7777777 677777777777777777776655556666667777777776543
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.11 E-value=4.4e-06 Score=72.03 Aligned_cols=105 Identities=19% Similarity=0.237 Sum_probs=63.4
Q ss_pred CCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcc-hhhhcCCCCCCEEe
Q 013710 238 ENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTI-PRFFSDLKKLRYLN 316 (437)
Q Consensus 238 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~ 316 (437)
.+...+||++|.+... +.|..++.|.+|.+++|+|+..-|..-..+++|+.|.|.+|.|.... -.-+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 3455666666666422 34666666777777777776554444444566777777777665211 12355667777777
Q ss_pred ccCCcCCCCCC---CCcccCCCCCEEEecCC
Q 013710 317 LQNNNFHGVLP---FNASILEKLQVFKVGGN 344 (437)
Q Consensus 317 L~~N~l~~~~~---~~l~~l~~L~~L~l~~N 344 (437)
+-+|.++..-- ..+..+++|+.||+.+=
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 77777664321 23466777888877654
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.97 E-value=8.5e-06 Score=70.29 Aligned_cols=107 Identities=23% Similarity=0.254 Sum_probs=79.4
Q ss_pred cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCC-CccccCCCCCCCeee
Q 013710 214 SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGS-VPESMASLTDMVHLD 292 (437)
Q Consensus 214 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~ 292 (437)
.+...+||++|.+... ..|..++.|..|.+++|+|+...|.--..+++|+.|.|.+|.|... --+-+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 5667788888887633 4677888999999999999866665545567899999999988732 123366788999999
Q ss_pred ccCCcCCCcc---hhhhcCCCCCCEEeccCCcC
Q 013710 293 LSSNQLNGTI---PRFFSDLKKLRYLNLQNNNF 322 (437)
Q Consensus 293 L~~N~l~~~~---~~~l~~l~~L~~L~L~~N~l 322 (437)
+-+|.++..- ...+..+++|+.||.++=..
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 9999887421 13466789999999876433
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.93 E-value=1.3e-05 Score=52.21 Aligned_cols=36 Identities=42% Similarity=0.623 Sum_probs=20.6
Q ss_pred CCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCC
Q 013710 287 DMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFH 323 (437)
Q Consensus 287 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 323 (437)
+|++|++++|+|+ .++..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5666666666666 34444666666666666666665
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.83 E-value=1.3e-05 Score=84.04 Aligned_cols=86 Identities=20% Similarity=0.293 Sum_probs=39.1
Q ss_pred hcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCccccc-CCcccc--cCccEEEccCCcCCCCC------Chh
Q 013710 163 LSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGY-IPKHLH--SNLTHVDFSGNQLKGKI------PTS 233 (437)
Q Consensus 163 ~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~--~~L~~L~Ls~n~l~~~~------~~~ 233 (437)
..++++|..||+|+++++.. ..++++++|++|.+.+-.+... .-..++ ++|+.||+|........ -+.
T Consensus 169 c~sFpNL~sLDIS~TnI~nl---~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec 245 (699)
T KOG3665|consen 169 CASFPNLRSLDISGTNISNL---SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLEC 245 (699)
T ss_pred hhccCccceeecCCCCccCc---HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHh
Confidence 34555555555555555432 3345555555555554444310 001111 55555555554432111 011
Q ss_pred ccCCCCCcEEEccCCCCC
Q 013710 234 ITLLENLQHLNLSSNGLN 251 (437)
Q Consensus 234 l~~l~~L~~L~L~~n~l~ 251 (437)
-..+++|+.||.+++.+.
T Consensus 246 ~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 246 GMVLPELRFLDCSGTDIN 263 (699)
T ss_pred cccCccccEEecCCcchh
Confidence 123566666666665554
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.82 E-value=1.8e-05 Score=51.57 Aligned_cols=36 Identities=25% Similarity=0.596 Sum_probs=20.8
Q ss_pred ccceeecccccCCCCCccccCCCCCCCeeeccCCcCC
Q 013710 263 ALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLN 299 (437)
Q Consensus 263 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~ 299 (437)
+|++|++++|+|+ .++..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4566666666666 34444666666666666666665
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.81 E-value=8.6e-06 Score=85.35 Aligned_cols=191 Identities=21% Similarity=0.238 Sum_probs=99.7
Q ss_pred CCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCC-CCCchhhhccccccccccCCCCChhh--hcCCCCCCEE
Q 013710 96 SHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPI-HFPNDLSLSLLSFSCIHSLHHLSGVF--LSRFVNLTDL 172 (437)
Q Consensus 96 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i-~lp~~l~~~l~~l~~l~~l~~l~~~~--~~~l~~L~~L 172 (437)
-+++..++.+...... ....+.+.. |++|.+.+-....- .... ... .+..+-... -..-.+|++|
T Consensus 60 f~ltki~l~~~~~~~~-~~~~l~~~~-L~sl~LGnl~~~k~~~~~~---------~~i-di~~lL~~~Ln~~sr~nL~~L 127 (699)
T KOG3665|consen 60 FNLTKIDLKNVTLQHQ-TLEMLRKQD-LESLKLGNLDKIKQDYLDD---------ATI-DIISLLKDLLNEESRQNLQHL 127 (699)
T ss_pred heeEEeeccceecchh-HHHHHhhcc-ccccCCcchHhhhhhhhhh---------hhc-cHHHHHHHHHhHHHHHhhhhc
Confidence 4788888876655322 223444444 88888876543110 0000 000 000000000 1123577888
Q ss_pred EeecCCCCCCchhHhhc-CCcCccEEEeeCCcccccCCcccc---cCccEEEccCCcCCCCCChhccCCCCCcEEEccCC
Q 013710 173 TVTNVPVNASGLYVIIG-NMHKLRSVTISNANVTGYIPKHLH---SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSN 248 (437)
Q Consensus 173 ~ls~n~l~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~---~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 248 (437)
++++...-..+.+..++ .+|.|+.|.+.+-.+...--..++ ++|..||+|+.+++.. ..++.+++|+.|.+.+=
T Consensus 128 dI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnL 205 (699)
T KOG3665|consen 128 DISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNL 205 (699)
T ss_pred CccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCC
Confidence 88776654444443343 367888888777655422111122 6777777777777633 56667777777776665
Q ss_pred CCCC-CCCcccCCCcccceeecccccCCCCC------ccccCCCCCCCeeeccCCcCCC
Q 013710 249 GLNG-EIPSSIGDLIALKNVSLASNSLSGSV------PESMASLTDMVHLDLSSNQLNG 300 (437)
Q Consensus 249 ~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~------~~~l~~l~~L~~L~L~~N~l~~ 300 (437)
.+.. ..-..+.++++|+.||+|........ -+.-..+++|+.||.+++.+.+
T Consensus 206 e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 206 EFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred CCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 5542 11124556777777777765544221 0112245667777776666654
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.81 E-value=9.1e-05 Score=72.06 Aligned_cols=135 Identities=16% Similarity=0.284 Sum_probs=85.0
Q ss_pred cCCCCCCEEEeecCCCCCCchhHhhcCC-cCccEEEeeCCcccccCCcccccCccEEEccCC-cCCCCCChhccCCCCCc
Q 013710 164 SRFVNLTDLTVTNVPVNASGLYVIIGNM-HKLRSVTISNANVTGYIPKHLHSNLTHVDFSGN-QLKGKIPTSITLLENLQ 241 (437)
Q Consensus 164 ~~l~~L~~L~ls~n~l~~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~ 241 (437)
..+.+++.|++++|.+.. ++ .+ .+|++|.++++.-...+|..+..+|++|++++| .+. .+| .+|+
T Consensus 49 ~~~~~l~~L~Is~c~L~s--LP----~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~-sLP------~sLe 115 (426)
T PRK15386 49 EEARASGRLYIKDCDIES--LP----VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEIS-GLP------ESVR 115 (426)
T ss_pred HHhcCCCEEEeCCCCCcc--cC----CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccc-ccc------cccc
Confidence 346889999999987643 33 23 368999998765545677767788999999988 444 344 3577
Q ss_pred EEEccCCCCCCCCCcccCCC-cccceeecccccCC--CCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEecc
Q 013710 242 HLNLSSNGLNGEIPSSIGDL-IALKNVSLASNSLS--GSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQ 318 (437)
Q Consensus 242 ~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~ 318 (437)
.|++.++.... +..+ .+|+.|.+.+++.. ...+..+ .++|++|++++|... ..|..+. .+|+.|+++
T Consensus 116 ~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 116 SLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred eEEeCCCCCcc-----cccCcchHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence 77777665531 1222 35667777543311 0112111 167899999988865 3343333 478888888
Q ss_pred CCc
Q 013710 319 NNN 321 (437)
Q Consensus 319 ~N~ 321 (437)
.|.
T Consensus 186 ~n~ 188 (426)
T PRK15386 186 IEQ 188 (426)
T ss_pred ccc
Confidence 763
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.73 E-value=7.9e-05 Score=72.48 Aligned_cols=113 Identities=23% Similarity=0.305 Sum_probs=70.7
Q ss_pred CCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCC-cccccCCcccccCccEEEccCCcCCCCCChhccCC-CCCcEEE
Q 013710 167 VNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNA-NVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLL-ENLQHLN 244 (437)
Q Consensus 167 ~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l-~~L~~L~ 244 (437)
.+|+.|++++|.-- ..++..+ ..+|++|++++| .+. . +..+|+.|+++.+.... +..+ ++|++|.
T Consensus 72 ~sLtsL~Lsnc~nL-tsLP~~L--P~nLe~L~Ls~Cs~L~-s----LP~sLe~L~L~~n~~~~-----L~~LPssLk~L~ 138 (426)
T PRK15386 72 NELTEITIENCNNL-TTLPGSI--PEGLEKLTVCHCPEIS-G----LPESVRSLEIKGSATDS-----IKNVPNGLTSLS 138 (426)
T ss_pred CCCcEEEccCCCCc-ccCCchh--hhhhhheEccCccccc-c----cccccceEEeCCCCCcc-----cccCcchHhhee
Confidence 46999999986542 2234333 258999999998 443 3 33678999998776541 2222 3577777
Q ss_pred ccCCC-CC-CCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCc
Q 013710 245 LSSNG-LN-GEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQ 297 (437)
Q Consensus 245 L~~n~-l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~ 297 (437)
+.+++ .. ...+..+ -.+|++|++++|... ..|..+. .+|+.|+++.|.
T Consensus 139 I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~ 188 (426)
T PRK15386 139 INSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQ 188 (426)
T ss_pred cccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCcEEEecccc
Confidence 75433 11 0111111 158999999998866 4454444 689999998764
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.61 E-value=3.9e-06 Score=75.73 Aligned_cols=99 Identities=17% Similarity=0.242 Sum_probs=75.8
Q ss_pred CCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCEEEe
Q 013710 95 FSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTV 174 (437)
Q Consensus 95 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L~l 174 (437)
+.++++|++.+|.+.+. ....+|+.|+.|.|+-|+|+.+ ..+..+++|++|+|
T Consensus 18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL------------------------~pl~rCtrLkElYL 70 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSL------------------------APLQRCTRLKELYL 70 (388)
T ss_pred HHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccc------------------------hhHHHHHHHHHHHH
Confidence 34788899999988543 3678899999999999988654 24667888999999
Q ss_pred ecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc-------cCccEEE
Q 013710 175 TNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH-------SNLTHVD 220 (437)
Q Consensus 175 s~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-------~~L~~L~ 220 (437)
..|.|.+..-...+.++++|+.|+|..|.-.+..+.... ++|+.||
T Consensus 71 RkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 71 RKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999887665556788899999999999887776655432 6676665
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=1.4e-05 Score=72.26 Aligned_cols=101 Identities=19% Similarity=0.208 Sum_probs=78.3
Q ss_pred CCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccccCccEEEccCCcCCCCC-ChhccCCCCCcEE
Q 013710 165 RFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKI-PTSITLLENLQHL 243 (437)
Q Consensus 165 ~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L 243 (437)
.+.+.++|+..++.+++. ....+|+.|++|.|+-|+|+...|..-+++|++|+|..|.|.... -..+.++++|+.|
T Consensus 17 dl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 456788899999999765 347789999999999999997777666699999999999987331 1367899999999
Q ss_pred EccCCCCCCCCCcc-----cCCCcccceee
Q 013710 244 NLSSNGLNGEIPSS-----IGDLIALKNVS 268 (437)
Q Consensus 244 ~L~~n~l~~~~~~~-----l~~l~~L~~L~ 268 (437)
.|..|...+..+.. +..+++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999876554432 44567777664
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.29 E-value=0.00012 Score=65.94 Aligned_cols=84 Identities=25% Similarity=0.347 Sum_probs=37.2
Q ss_pred CCCcEEEccCCCCCCCCCcccCCCcccceeecccc--cCCCCCccccCCCCCCCeeeccCCcCCCcc-hhhhcCCCCCCE
Q 013710 238 ENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASN--SLSGSVPESMASLTDMVHLDLSSNQLNGTI-PRFFSDLKKLRY 314 (437)
Q Consensus 238 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~ 314 (437)
..|+.|++.+..++.. ..|..+++|+.|.++.| ++.+.+......+++|++|+|++|+|...- -..+..+.+|..
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 3444444444444321 23444555555555555 333333333334455555555555554200 011233444555
Q ss_pred EeccCCcCC
Q 013710 315 LNLQNNNFH 323 (437)
Q Consensus 315 L~L~~N~l~ 323 (437)
|++.+|..+
T Consensus 121 Ldl~n~~~~ 129 (260)
T KOG2739|consen 121 LDLFNCSVT 129 (260)
T ss_pred hhcccCCcc
Confidence 555555444
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.04 E-value=0.00015 Score=73.57 Aligned_cols=63 Identities=22% Similarity=0.281 Sum_probs=34.0
Q ss_pred cCCCCCCEEEeecCC-CCCCchhHhhcCCcCccEEEeeCCc-ccccCCcccc---cCccEEEccCCcC
Q 013710 164 SRFVNLTDLTVTNVP-VNASGLYVIIGNMHKLRSVTISNAN-VTGYIPKHLH---SNLTHVDFSGNQL 226 (437)
Q Consensus 164 ~~l~~L~~L~ls~n~-l~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~---~~L~~L~Ls~n~l 226 (437)
..+.+|+.|+++++. +++.++......+++|++|.+.++. +++..-..+. +.|++|+++++..
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 344666666666666 5544444434446667776666555 3433222222 5566666665543
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.04 E-value=0.0015 Score=53.39 Aligned_cols=14 Identities=7% Similarity=0.297 Sum_probs=5.3
Q ss_pred hccCCCCCcEEEcc
Q 013710 233 SITLLENLQHLNLS 246 (437)
Q Consensus 233 ~l~~l~~L~~L~L~ 246 (437)
.|.++.+++.+.+.
T Consensus 53 ~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 53 AFSNCKSLESITFP 66 (129)
T ss_dssp TTTT-TT-EEEEET
T ss_pred eeeccccccccccc
Confidence 34444444444443
No 66
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.01 E-value=8.8e-06 Score=81.70 Aligned_cols=178 Identities=23% Similarity=0.292 Sum_probs=86.2
Q ss_pred CCEEEeecCCCCCCc---hhHhhcCCcCccEEEeeCCcccccCCcccc-------cCccEEEccCCcCCCC----CChhc
Q 013710 169 LTDLTVTNVPVNASG---LYVIIGNMHKLRSVTISNANVTGYIPKHLH-------SNLTHVDFSGNQLKGK----IPTSI 234 (437)
Q Consensus 169 L~~L~ls~n~l~~~~---~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-------~~L~~L~Ls~n~l~~~----~~~~l 234 (437)
+..|.+.+|.+...+ +...+..+..|+.|++++|.+.+..-..+. ..+++|++..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 555666666665444 333444555666666666666533222221 2344555555555432 22334
Q ss_pred cCCCCCcEEEccCCCCCC----CCCcccC----CCcccceeecccccCCCC----CccccCCCCC-CCeeeccCCcCCCc
Q 013710 235 TLLENLQHLNLSSNGLNG----EIPSSIG----DLIALKNVSLASNSLSGS----VPESMASLTD-MVHLDLSSNQLNGT 301 (437)
Q Consensus 235 ~~l~~L~~L~L~~n~l~~----~~~~~l~----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~-L~~L~L~~N~l~~~ 301 (437)
.....+++++++.|.+.. .++..+. ...++++|++.+|.++.. +...+...+. +..|++.+|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 445566666666665531 1111222 345566666666665521 1122333333 45566666666533
Q ss_pred ----chhhhcCC-CCCCEEeccCCcCCCCCCC----CcccCCCCCEEEecCCCC
Q 013710 302 ----IPRFFSDL-KKLRYLNLQNNNFHGVLPF----NASILEKLQVFKVGGNTN 346 (437)
Q Consensus 302 ----~~~~l~~l-~~L~~L~L~~N~l~~~~~~----~l~~l~~L~~L~l~~N~~ 346 (437)
....+..+ ..+++++++.|.|++.... .+..+++++.+.+++|+.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 12233333 4556666666666543222 223344556666666653
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.99 E-value=0.0014 Score=53.59 Aligned_cols=116 Identities=18% Similarity=0.280 Sum_probs=53.9
Q ss_pred CccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeecc
Q 013710 215 NLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLS 294 (437)
Q Consensus 215 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 294 (437)
+|+.+.+.. .+.......|.++.+|+.+.+.++ +.......|.++.+|+.+.+.. .+.......|..+.+|+.+++.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 445555443 333344456777777888887765 5434445677776788888865 3432344556667788888886
Q ss_pred CCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCC
Q 013710 295 SNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKL 336 (437)
Q Consensus 295 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L 336 (437)
.+ +.......|.+. +|+.+.+.. .+.......|.++++|
T Consensus 90 ~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 90 SN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 65 443444566665 777777765 3333444445555444
No 68
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.94 E-value=7.2e-06 Score=82.33 Aligned_cols=37 Identities=32% Similarity=0.310 Sum_probs=19.5
Q ss_pred eeEEEccCCCCCCcCC---hhhhCCCCCCCEEecccCCCC
Q 013710 98 LLSLRLSNCSDDISLS---STALKSLSTLQNLTFFNCPIA 134 (437)
Q Consensus 98 L~~L~Ls~n~~~~~~~---~~~~~~l~~L~~L~L~~n~l~ 134 (437)
+..|.|.+|.+..... ...+.....|+.|++++|.++
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 5556666666543211 134455556666666666554
No 69
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=96.91 E-value=0.00098 Score=77.46 Aligned_cols=79 Identities=14% Similarity=0.005 Sum_probs=60.0
Q ss_pred eccCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCc-ccccccccccccCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013710 316 NLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNH-TVLSSKLKLGIAPC-DKHGLPISPPPAKDNSSDDSENDSSDDD 393 (437)
Q Consensus 316 ~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~-~~~~~~~~~~~~~c-~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 393 (437)
||++|+|+...+..|..+.+|+.|+|++|||.|+|. .|+..|.+...... ......|..|+...+....+....+..|
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~~l~~~d~~C 80 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIPLLDSGC 80 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCChHHCCCCcccCCcccCCC
Confidence 688999997767777889999999999999999999 56666765432221 2345779999988888887776665555
Q ss_pred C
Q 013710 394 D 394 (437)
Q Consensus 394 ~ 394 (437)
.
T Consensus 81 ~ 81 (2740)
T TIGR00864 81 D 81 (2740)
T ss_pred C
Confidence 4
No 70
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.90 E-value=6.3e-05 Score=71.79 Aligned_cols=102 Identities=15% Similarity=0.255 Sum_probs=53.0
Q ss_pred CeeEEEccCCCCCCcCChhh-hCCCCCCCEEecccCCC-CCCCCCchhhhccccccccccCC-----CCChh----hhcC
Q 013710 97 HLLSLRLSNCSDDISLSSTA-LKSLSTLQNLTFFNCPI-APIHFPNDLSLSLLSFSCIHSLH-----HLSGV----FLSR 165 (437)
Q Consensus 97 ~L~~L~Ls~n~~~~~~~~~~-~~~l~~L~~L~L~~n~l-~~i~lp~~l~~~l~~l~~l~~l~-----~l~~~----~~~~ 165 (437)
.|++|.+.+|.-.+.-+... -.+++++++|++.+|.. ++. .+...-...+.++.+. .++.. .-..
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~----s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDS----SLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHH----HHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 57888888876544333223 34677888888888762 211 1110011111111111 11221 3457
Q ss_pred CCCCCEEEeecCC-CCCCchhHhhcCCcCccEEEeeCC
Q 013710 166 FVNLTDLTVTNVP-VNASGLYVIIGNMHKLRSVTISNA 202 (437)
Q Consensus 166 l~~L~~L~ls~n~-l~~~~~~~~l~~l~~L~~L~L~~n 202 (437)
+++|++|+++.+. +...++...+.++.+++.+.+.+|
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC 252 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC 252 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccc
Confidence 7888888888875 333334455556666666655543
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.83 E-value=0.00031 Score=63.23 Aligned_cols=84 Identities=24% Similarity=0.333 Sum_probs=39.1
Q ss_pred ccCCCCCcEEEccCC--CCCCCCCcccCCCcccceeecccccCCCC-CccccCCCCCCCeeeccCCcCCCc---chhhhc
Q 013710 234 ITLLENLQHLNLSSN--GLNGEIPSSIGDLIALKNVSLASNSLSGS-VPESMASLTDMVHLDLSSNQLNGT---IPRFFS 307 (437)
Q Consensus 234 l~~l~~L~~L~L~~n--~l~~~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~---~~~~l~ 307 (437)
|-.+++|+.|.++.| .+.+.+.-....+++|++|++++|++... -...+..+.+|..|++.+|..+.. --..|.
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 334455555555555 33333322233345556666666655521 011233445555666666655431 112344
Q ss_pred CCCCCCEEec
Q 013710 308 DLKKLRYLNL 317 (437)
Q Consensus 308 ~l~~L~~L~L 317 (437)
-+++|++||-
T Consensus 141 ll~~L~~LD~ 150 (260)
T KOG2739|consen 141 LLPSLKYLDG 150 (260)
T ss_pred Hhhhhccccc
Confidence 4566666543
No 72
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.61 E-value=0.00044 Score=66.15 Aligned_cols=234 Identities=17% Similarity=0.120 Sum_probs=126.1
Q ss_pred CCCCeeEEEccCCCCCCcCChh-hhCCCCCCCEEecccCC-CCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCE
Q 013710 94 PFSHLLSLRLSNCSDDISLSST-ALKSLSTLQNLTFFNCP-IAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTD 171 (437)
Q Consensus 94 ~l~~L~~L~Ls~n~~~~~~~~~-~~~~l~~L~~L~L~~n~-l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~ 171 (437)
.+++|++|+|..|.......-. .-..+++|++|+++.|. |++ ..+ ...+.+.++++.
T Consensus 188 ~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~----~gv-----------------~~~~rG~~~l~~ 246 (483)
T KOG4341|consen 188 YCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG----NGV-----------------QALQRGCKELEK 246 (483)
T ss_pred hcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc----Ccc-----------------hHHhccchhhhh
Confidence 4578999999997643332222 34578999999999986 222 000 013445555555
Q ss_pred EEeecCCCCCC-chhHhhcCCcCccEEEeeCCcc-cccCCcccc---cCccEEEccCCcCC-CCCCh-hccCCCCCcEEE
Q 013710 172 LTVTNVPVNAS-GLYVIIGNMHKLRSVTISNANV-TGYIPKHLH---SNLTHVDFSGNQLK-GKIPT-SITLLENLQHLN 244 (437)
Q Consensus 172 L~ls~n~l~~~-~~~~~l~~l~~L~~L~L~~n~l-~~~~~~~~~---~~L~~L~Ls~n~l~-~~~~~-~l~~l~~L~~L~ 244 (437)
+.+.+|.-... .+...-+.+..+.++++.+|.. ++..-..+. ..|+.|+.+++.-. ...-. --.+..+|+.|.
T Consensus 247 ~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~ 326 (483)
T KOG4341|consen 247 LSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLE 326 (483)
T ss_pred hhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEe
Confidence 55555432111 1222223344455555555532 211111111 56677776665432 11111 123567777777
Q ss_pred ccCCC-CCCCCCccc-CCCcccceeecccccCCC--CCccccCCCCCCCeeeccCCcCCCcc-----hhhhcCCCCCCEE
Q 013710 245 LSSNG-LNGEIPSSI-GDLIALKNVSLASNSLSG--SVPESMASLTDMVHLDLSSNQLNGTI-----PRFFSDLKKLRYL 315 (437)
Q Consensus 245 L~~n~-l~~~~~~~l-~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~N~l~~~~-----~~~l~~l~~L~~L 315 (437)
++.++ +++.--..+ .+...|+.+++..+.... .+...-.+++.|+.|.|+++...... ...-..+..|+.+
T Consensus 327 l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~l 406 (483)
T KOG4341|consen 327 LSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVL 406 (483)
T ss_pred ccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccccccee
Confidence 77764 222111111 345677888877765431 12333346778888888877643211 1222345678888
Q ss_pred eccCCcCC-CCCCCCcccCCCCCEEEecCCCCCC
Q 013710 316 NLQNNNFH-GVLPFNASILEKLQVFKVGGNTNLC 348 (437)
Q Consensus 316 ~L~~N~l~-~~~~~~l~~l~~L~~L~l~~N~~~c 348 (437)
.|+++... +..-..+..+++|+.+++-+++..-
T Consensus 407 EL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 407 ELDNCPLITDATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred eecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence 88888654 2333455677888888888776544
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.24 E-value=0.0017 Score=65.96 Aligned_cols=162 Identities=19% Similarity=0.136 Sum_probs=83.2
Q ss_pred CCCCCCEEEeecCC-CCCCchhHhhcCCcCccEEEeeCCcccccC-Cccc---ccCccEEEccCCcCCCCCChhccCCCC
Q 013710 165 RFVNLTDLTVTNVP-VNASGLYVIIGNMHKLRSVTISNANVTGYI-PKHL---HSNLTHVDFSGNQLKGKIPTSITLLEN 239 (437)
Q Consensus 165 ~l~~L~~L~ls~n~-l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~---~~~L~~L~Ls~n~l~~~~~~~l~~l~~ 239 (437)
.+++|+.|.+.++. +++.++......+++|++|+++++...... -..+ .++++.|.+.... .+..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~----------~c~~ 336 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN----------GCPS 336 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC----------CCcc
Confidence 47899999988888 687888888888999999999988654110 0001 1444443332221 1344
Q ss_pred CcEEEccCCCCC---CCCCcccCCCcccceeecccccCCCCC-ccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEE
Q 013710 240 LQHLNLSSNGLN---GEIPSSIGDLIALKNVSLASNSLSGSV-PESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYL 315 (437)
Q Consensus 240 L~~L~L~~n~l~---~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L 315 (437)
++.+.+.+.... ....-.+..+++++.+.+.++...... ...+.+++.|. ..+ ........+++.|
T Consensus 337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l---------~~~~~~~~~l~~L 406 (482)
T KOG1947|consen 337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESL---------ELRLCRSDSLRVL 406 (482)
T ss_pred HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHH---------HHHhccCCccceE
Confidence 444444433221 111223456677777777776643222 23344444441 111 1111122226777
Q ss_pred eccCCcCCCCC-CCCccc-CCCCCEEEecCCCC
Q 013710 316 NLQNNNFHGVL-PFNASI-LEKLQVFKVGGNTN 346 (437)
Q Consensus 316 ~L~~N~l~~~~-~~~l~~-l~~L~~L~l~~N~~ 346 (437)
+++.+...... -..... +..+..+++.+.+.
T Consensus 407 ~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~ 439 (482)
T KOG1947|consen 407 NLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRV 439 (482)
T ss_pred ecccCccccccchHHHhhhhhccccCCccCccc
Confidence 77776543211 111111 44555666666553
No 74
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=95.11 E-value=0.02 Score=35.75 Aligned_cols=28 Identities=7% Similarity=0.209 Sum_probs=15.3
Q ss_pred ceEEEEehhHHHHHHHHHHHHHHHHhhc
Q 013710 409 NKVVLGLAIGLSSIVFLIVFVVLLSKWC 436 (437)
Q Consensus 409 ~~~~~~~~i~~~~~~~li~~~~~~~~~~ 436 (437)
..+..|+++.+++++++++++++++|||
T Consensus 11 vaIa~~VvVPV~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 11 VAIAVGVVVPVGVIIIVLGAFLFFWYRR 38 (40)
T ss_pred EEEEEEEEechHHHHHHHHHHhheEEec
Confidence 4555666666666655554444444443
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.61 E-value=0.016 Score=31.34 Aligned_cols=12 Identities=50% Similarity=0.639 Sum_probs=5.1
Q ss_pred CCeeeccCCcCC
Q 013710 288 MVHLDLSSNQLN 299 (437)
Q Consensus 288 L~~L~L~~N~l~ 299 (437)
|++|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 76
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.00 E-value=0.023 Score=30.71 Aligned_cols=12 Identities=50% Similarity=0.767 Sum_probs=5.0
Q ss_pred ccEEEccCCcCC
Q 013710 216 LTHVDFSGNQLK 227 (437)
Q Consensus 216 L~~L~Ls~n~l~ 227 (437)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444443
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.88 E-value=0.0016 Score=57.67 Aligned_cols=83 Identities=20% Similarity=0.260 Sum_probs=45.7
Q ss_pred cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeec
Q 013710 214 SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDL 293 (437)
Q Consensus 214 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 293 (437)
...+.||++.|++- .....|+.++.|..|+++.|.+. ..|+.++....+.++++..|... ..|..++..++++++++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 44555666666554 23334455555556666665555 45555555555555555555554 45555555555555555
Q ss_pred cCCcCC
Q 013710 294 SSNQLN 299 (437)
Q Consensus 294 ~~N~l~ 299 (437)
.+|.+.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 555544
No 78
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=93.04 E-value=0.073 Score=41.01 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=13.2
Q ss_pred CCceEEEEehhHHHHHHHHHH
Q 013710 407 GPNKVVLGLAIGLSSIVFLIV 427 (437)
Q Consensus 407 ~~~~~~~~~~i~~~~~~~li~ 427 (437)
.....++|++|++++++.+++
T Consensus 63 ls~gaiagi~vg~~~~v~~lv 83 (96)
T PTZ00382 63 LSTGAIAGISVAVVAVVGGLV 83 (96)
T ss_pred cccccEEEEEeehhhHHHHHH
Confidence 334677888887666654443
No 79
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=92.43 E-value=0.13 Score=42.58 Aligned_cols=24 Identities=17% Similarity=0.618 Sum_probs=14.7
Q ss_pred ceEEEEehhHHHHHHHHHHHHHHH
Q 013710 409 NKVVLGLAIGLSSIVFLIVFVVLL 432 (437)
Q Consensus 409 ~~~~~~~~i~~~~~~~li~~~~~~ 432 (437)
..+++|++||+.+.+++++++++|
T Consensus 48 knIVIGvVVGVGg~ill~il~lvf 71 (154)
T PF04478_consen 48 KNIVIGVVVGVGGPILLGILALVF 71 (154)
T ss_pred ccEEEEEEecccHHHHHHHHHhhe
Confidence 357788888876655555444443
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.24 E-value=0.0033 Score=55.80 Aligned_cols=87 Identities=18% Similarity=0.245 Sum_probs=48.0
Q ss_pred ccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCC
Q 013710 234 ITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLR 313 (437)
Q Consensus 234 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~ 313 (437)
+......+.||++.|++. .....|+.++.|..|+++.|++. ..|..++.+..++.+++.+|... ..|.++...++++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 334445555666666554 33344555555666666666555 45555555555555555555554 4455556666666
Q ss_pred EEeccCCcCC
Q 013710 314 YLNLQNNNFH 323 (437)
Q Consensus 314 ~L~L~~N~l~ 323 (437)
++++.+|.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 6666655543
No 81
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.94 E-value=0.17 Score=25.42 Aligned_cols=11 Identities=55% Similarity=0.776 Sum_probs=3.2
Q ss_pred CCeeeccCCcC
Q 013710 288 MVHLDLSSNQL 298 (437)
Q Consensus 288 L~~L~L~~N~l 298 (437)
|+.|+|++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33344443333
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.53 E-value=0.34 Score=27.15 Aligned_cols=14 Identities=50% Similarity=0.731 Sum_probs=7.1
Q ss_pred CCCCeeeccCCcCC
Q 013710 286 TDMVHLDLSSNQLN 299 (437)
Q Consensus 286 ~~L~~L~L~~N~l~ 299 (437)
++|++|+|++|+|.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555554
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.53 E-value=0.34 Score=27.15 Aligned_cols=14 Identities=50% Similarity=0.731 Sum_probs=7.1
Q ss_pred CCCCeeeccCCcCC
Q 013710 286 TDMVHLDLSSNQLN 299 (437)
Q Consensus 286 ~~L~~L~L~~N~l~ 299 (437)
++|++|+|++|+|.
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555554
No 84
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=89.45 E-value=0.43 Score=41.84 Aligned_cols=28 Identities=21% Similarity=0.510 Sum_probs=21.2
Q ss_pred ceEEEEehhHHHHHHHHHHHHHHHHhhc
Q 013710 409 NKVVLGLAIGLSSIVFLIVFVVLLSKWC 436 (437)
Q Consensus 409 ~~~~~~~~i~~~~~~~li~~~~~~~~~~ 436 (437)
..+++|++.|+++++++|++++++++||
T Consensus 37 ~~I~iaiVAG~~tVILVI~i~v~vR~CR 64 (221)
T PF08374_consen 37 VKIMIAIVAGIMTVILVIFIVVLVRYCR 64 (221)
T ss_pred eeeeeeeecchhhhHHHHHHHHHHHHHh
Confidence 5778888888888888887777776444
No 85
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=88.53 E-value=0.16 Score=40.71 Aligned_cols=25 Identities=16% Similarity=0.421 Sum_probs=13.3
Q ss_pred ceEEEEehhHHHHHHHHHHHHHHHH
Q 013710 409 NKVVLGLAIGLSSIVFLIVFVVLLS 433 (437)
Q Consensus 409 ~~~~~~~~i~~~~~~~li~~~~~~~ 433 (437)
..++++|++|+++.+++++++++|+
T Consensus 63 ~~~i~~Ii~gv~aGvIg~Illi~y~ 87 (122)
T PF01102_consen 63 EPAIIGIIFGVMAGVIGIILLISYC 87 (122)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeehhHHHHHHHHHHHHHHHHH
Confidence 3455666666666665554444433
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.52 E-value=0.15 Score=44.64 Aligned_cols=82 Identities=20% Similarity=0.318 Sum_probs=46.4
Q ss_pred CeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCC-CCCCCCchhhhccccccccccCCCCChhhhcCCCCCCEEEee
Q 013710 97 HLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPI-APIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTVT 175 (437)
Q Consensus 97 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L~ls 175 (437)
.++.+|-+++.+..+- -+.+.+++.++.|.+.+|.- .+. - |.. +-.-.++|+.|+++
T Consensus 102 ~IeaVDAsds~I~~eG-le~L~~l~~i~~l~l~~ck~~dD~-----~------------L~~----l~~~~~~L~~L~ls 159 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEG-LEHLRDLRSIKSLSLANCKYFDDW-----C------------LER----LGGLAPSLQDLDLS 159 (221)
T ss_pred eEEEEecCCchHHHHH-HHHHhccchhhhheeccccchhhH-----H------------HHH----hcccccchheeecc
Confidence 4677777777665432 24566667777777776641 110 0 000 11144677788887
Q ss_pred cCC-CCCCchhHhhcCCcCccEEEeeC
Q 013710 176 NVP-VNASGLYVIIGNMHKLRSVTISN 201 (437)
Q Consensus 176 ~n~-l~~~~~~~~l~~l~~L~~L~L~~ 201 (437)
+|. |++.++ ..+..+++|+.|.+.+
T Consensus 160 gC~rIT~~GL-~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 160 GCPRITDGGL-ACLLKLKNLRRLHLYD 185 (221)
T ss_pred CCCeechhHH-HHHHHhhhhHHHHhcC
Confidence 664 444434 3466777777777664
No 87
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=87.15 E-value=0.7 Score=45.70 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=23.1
Q ss_pred CCCceEEEEehhHHHHHHHHHHHHHHHHhhcC
Q 013710 406 HGPNKVVLGLAIGLSSIVFLIVFVVLLSKWCG 437 (437)
Q Consensus 406 ~~~~~~~~~~~i~~~~~~~li~~~~~~~~~~r 437 (437)
.....+|+||+|++|++|.-+|.++.||+.+|
T Consensus 363 ~LstgaIaGIsvavvvvVgglvGfLcWwf~cr 394 (397)
T PF03302_consen 363 GLSTGAIAGISVAVVVVVGGLVGFLCWWFICR 394 (397)
T ss_pred cccccceeeeeehhHHHHHHHHHHHhhheeec
Confidence 34567888999998888876666666666554
No 88
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.80 E-value=0.12 Score=45.19 Aligned_cols=10 Identities=30% Similarity=0.395 Sum_probs=4.0
Q ss_pred CCCEEeccCC
Q 013710 311 KLRYLNLQNN 320 (437)
Q Consensus 311 ~L~~L~L~~N 320 (437)
+|+.|++++|
T Consensus 152 ~L~~L~lsgC 161 (221)
T KOG3864|consen 152 SLQDLDLSGC 161 (221)
T ss_pred chheeeccCC
Confidence 3444444433
No 89
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.13 E-value=0.61 Score=26.09 Aligned_cols=14 Identities=50% Similarity=0.719 Sum_probs=6.9
Q ss_pred CCCcEEEccCCCCC
Q 013710 238 ENLQHLNLSSNGLN 251 (437)
Q Consensus 238 ~~L~~L~L~~n~l~ 251 (437)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555554
No 90
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.13 E-value=0.61 Score=26.09 Aligned_cols=14 Identities=50% Similarity=0.719 Sum_probs=6.9
Q ss_pred CCCcEEEccCCCCC
Q 013710 238 ENLQHLNLSSNGLN 251 (437)
Q Consensus 238 ~~L~~L~L~~n~l~ 251 (437)
++|+.|+|++|+++
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 34455555555554
No 91
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=84.61 E-value=0.38 Score=29.55 Aligned_cols=11 Identities=0% Similarity=0.024 Sum_probs=4.3
Q ss_pred EehhHHHHHHH
Q 013710 414 GLAIGLSSIVF 424 (437)
Q Consensus 414 ~~~i~~~~~~~ 424 (437)
++++++++.++
T Consensus 7 aIIv~V~vg~~ 17 (38)
T PF02439_consen 7 AIIVAVVVGMA 17 (38)
T ss_pred hHHHHHHHHHH
Confidence 33444333333
No 92
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.23 E-value=0.19 Score=27.62 Aligned_cols=13 Identities=46% Similarity=0.728 Sum_probs=5.2
Q ss_pred CCCeeeccCCcCC
Q 013710 287 DMVHLDLSSNQLN 299 (437)
Q Consensus 287 ~L~~L~L~~N~l~ 299 (437)
+|++|+|++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444444444444
No 93
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=83.49 E-value=0.33 Score=33.72 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=0.0
Q ss_pred ceEEEEehhHHHHHHHHHHHHHHHH
Q 013710 409 NKVVLGLAIGLSSIVFLIVFVVLLS 433 (437)
Q Consensus 409 ~~~~~~~~i~~~~~~~li~~~~~~~ 433 (437)
..+++|+++++++++++++++++..
T Consensus 12 aavIaG~Vvgll~ailLIlf~iyR~ 36 (64)
T PF01034_consen 12 AAVIAGGVVGLLFAILLILFLIYRM 36 (64)
T ss_dssp -------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666665555533
No 94
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=80.35 E-value=1.1 Score=34.19 Aligned_cols=31 Identities=13% Similarity=0.251 Sum_probs=23.2
Q ss_pred CCCceEEEEehhHHHHHHHHHHHHHHHHhhc
Q 013710 406 HGPNKVVLGLAIGLSSIVFLIVFVVLLSKWC 436 (437)
Q Consensus 406 ~~~~~~~~~~~i~~~~~~~li~~~~~~~~~~ 436 (437)
...|.+++|++++++++-++|++++.+-.||
T Consensus 14 g~sW~~LVGVv~~al~~SlLIalaaKC~~~~ 44 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALAAKCPVWY 44 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4457778888888888888888877765554
No 95
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=80.14 E-value=0.69 Score=43.51 Aligned_cols=26 Identities=19% Similarity=0.466 Sum_probs=13.4
Q ss_pred EEEehhHHHHHHHHHHHHHHHHhhcC
Q 013710 412 VLGLAIGLSSIVFLIVFVVLLSKWCG 437 (437)
Q Consensus 412 ~~~~~i~~~~~~~li~~~~~~~~~~r 437 (437)
+++.+++++++|++++++++++|+||
T Consensus 258 I~aSiiaIliIVLIMvIIYLILRYRR 283 (299)
T PF02009_consen 258 IIASIIAILIIVLIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554444
No 96
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.60 E-value=1.5 Score=24.76 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=13.2
Q ss_pred CCCCCEEecccCCCCCC
Q 013710 120 LSTLQNLTFFNCPIAPI 136 (437)
Q Consensus 120 l~~L~~L~L~~n~l~~i 136 (437)
+++|++|++++|+|+.+
T Consensus 1 L~~L~~L~L~~NkI~~I 17 (26)
T smart00365 1 LTNLEELDLSQNKIKKI 17 (26)
T ss_pred CCccCEEECCCCcccee
Confidence 46788999999988643
No 97
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=79.33 E-value=1.9 Score=26.58 Aligned_cols=26 Identities=12% Similarity=0.384 Sum_probs=13.7
Q ss_pred eEEEEehhHHHHHHHHHHHHHHHHhh
Q 013710 410 KVVLGLAIGLSSIVFLIVFVVLLSKW 435 (437)
Q Consensus 410 ~~~~~~~i~~~~~~~li~~~~~~~~~ 435 (437)
.+++|+++|++++++.++...++++|
T Consensus 7 aIIv~V~vg~~iiii~~~~YaCcykk 32 (38)
T PF02439_consen 7 AIIVAVVVGMAIIIICMFYYACCYKK 32 (38)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 44556666666555555444444433
No 98
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=79.29 E-value=1.4 Score=43.40 Aligned_cols=10 Identities=30% Similarity=0.013 Sum_probs=3.7
Q ss_pred eeEEEccCCC
Q 013710 98 LLSLRLSNCS 107 (437)
Q Consensus 98 L~~L~Ls~n~ 107 (437)
|..=.-++|+
T Consensus 76 i~a~w~snn~ 85 (465)
T PF01690_consen 76 IDAGWYSNNS 85 (465)
T ss_pred ecceeEecCc
Confidence 3333333333
No 99
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=73.85 E-value=4 Score=33.31 Aligned_cols=16 Identities=19% Similarity=0.158 Sum_probs=10.3
Q ss_pred CCCCccHHHHHHHHHH
Q 013710 1 MRPPLPFFFLLLILLT 16 (437)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (437)
||.++.+++.|++...
T Consensus 1 MR~l~~~LL~L~LsGC 16 (133)
T PRK10781 1 MRALPICLLALMLTGC 16 (133)
T ss_pred CchHHHHHHHHHHhhc
Confidence 7777776666665443
No 100
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=72.95 E-value=2.3 Score=43.02 Aligned_cols=13 Identities=15% Similarity=0.123 Sum_probs=7.7
Q ss_pred CCCCCCEEEeecC
Q 013710 165 RFVNLTDLTVTNV 177 (437)
Q Consensus 165 ~l~~L~~L~ls~n 177 (437)
..++|+.|+|++|
T Consensus 242 ~apklk~L~LS~N 254 (585)
T KOG3763|consen 242 IAPKLKTLDLSHN 254 (585)
T ss_pred hcchhheeecccc
Confidence 4456666666666
No 101
>smart00082 LRRCT Leucine rich repeat C-terminal domain.
Probab=72.61 E-value=0.8 Score=30.37 Aligned_cols=36 Identities=19% Similarity=0.146 Sum_probs=19.8
Q ss_pred CCCCCcCc-ccccccccccccCCCCCCCCCCCCCCCC
Q 013710 344 NTNLCYNH-TVLSSKLKLGIAPCDKHGLPISPPPAKD 379 (437)
Q Consensus 344 N~~~c~~~-~~~~~~~~~~~~~c~~~~~~~~~p~~~~ 379 (437)
|||.|+|. .++..|.......-....+.|..|+...
T Consensus 1 NP~~CdC~l~~~~~w~~~~~~~~~~~~~~C~~P~~~~ 37 (51)
T smart00082 1 NPFICDCELRWLLRWLQANEHLQDPVSLRCASPSSLR 37 (51)
T ss_pred CCccCcCCchHHHHHHHhCCccCCCCCCEeCCcHHHH
Confidence 89999998 4455554431111122345666665544
No 102
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=71.84 E-value=3.6 Score=37.85 Aligned_cols=9 Identities=0% Similarity=-0.226 Sum_probs=3.9
Q ss_pred HHHHHhhcC
Q 013710 429 VVLLSKWCG 437 (437)
Q Consensus 429 ~~~~~~~~r 437 (437)
+++|.||||
T Consensus 278 LYiWlyrrR 286 (295)
T TIGR01478 278 LYIWLYRRR 286 (295)
T ss_pred HHHHHHHhh
Confidence 334444444
No 103
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=71.35 E-value=11 Score=37.60 Aligned_cols=182 Identities=13% Similarity=0.020 Sum_probs=91.1
Q ss_pred hcCCCCCCEEEeecCCCCCCc-------hhHhhcCCcCccEEEeeCCcccccCCcccc--------cCccEEEccCCcCC
Q 013710 163 LSRFVNLTDLTVTNVPVNASG-------LYVIIGNMHKLRSVTISNANVTGYIPKHLH--------SNLTHVDFSGNQLK 227 (437)
Q Consensus 163 ~~~l~~L~~L~ls~n~l~~~~-------~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--------~~L~~L~Ls~n~l~ 227 (437)
.+.-++|...+++.|...... ..+.+..-.++ +|++..+....+-+..+. ..=-.+|++.|...
T Consensus 264 ~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~ 342 (553)
T KOG4242|consen 264 AGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLE 342 (553)
T ss_pred cccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhcccc
Confidence 445567777777777654221 12223333455 666666655433333221 11134555555443
Q ss_pred CCC-ChhccCCCCCcEEEccCCCCCCCCCccc--CCCcccceeecccccCCCC-Cccc----c----CCCCCCCeeeccC
Q 013710 228 GKI-PTSITLLENLQHLNLSSNGLNGEIPSSI--GDLIALKNVSLASNSLSGS-VPES----M----ASLTDMVHLDLSS 295 (437)
Q Consensus 228 ~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~L~~n~l~~~-~~~~----l----~~l~~L~~L~L~~ 295 (437)
+.- .++-.+=..+++|....|++.+...... ..-+..+.+++.+-.-... .+.. . ....-+..+.++.
T Consensus 343 ~a~vleaci~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~ 422 (553)
T KOG4242|consen 343 RAEVLEACIFGQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSP 422 (553)
T ss_pred ccchhhccccceeeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCC
Confidence 211 1111122357888888887775543322 2334566666544221100 0000 0 1123466778888
Q ss_pred CcCCCcch---hhhcCCCCCCEEeccCCcCCC----CCCCCcccCCCCCEEEecCCC
Q 013710 296 NQLNGTIP---RFFSDLKKLRYLNLQNNNFHG----VLPFNASILEKLQVFKVGGNT 345 (437)
Q Consensus 296 N~l~~~~~---~~l~~l~~L~~L~L~~N~l~~----~~~~~l~~l~~L~~L~l~~N~ 345 (437)
|.+....- ..+..-+.+..|++++|...+ .+|..+..-.+++.+..+.|-
T Consensus 423 ~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~ 479 (553)
T KOG4242|consen 423 GPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNL 479 (553)
T ss_pred CcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCC
Confidence 87764332 233445778889999987764 344444444556655555553
No 104
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=71.31 E-value=3.4 Score=35.94 Aligned_cols=13 Identities=23% Similarity=0.644 Sum_probs=5.9
Q ss_pred eEEEEehhHHHHH
Q 013710 410 KVVLGLAIGLSSI 422 (437)
Q Consensus 410 ~~~~~~~i~~~~~ 422 (437)
.+++||++++++|
T Consensus 79 ~iivgvi~~Vi~I 91 (179)
T PF13908_consen 79 GIIVGVICGVIAI 91 (179)
T ss_pred eeeeehhhHHHHH
Confidence 3444454444444
No 105
>PTZ00370 STEVOR; Provisional
Probab=71.28 E-value=3.8 Score=37.80 Aligned_cols=9 Identities=0% Similarity=-0.226 Sum_probs=3.8
Q ss_pred HHHHHhhcC
Q 013710 429 VVLLSKWCG 437 (437)
Q Consensus 429 ~~~~~~~~r 437 (437)
+++|.||||
T Consensus 274 lYiwlyrrR 282 (296)
T PTZ00370 274 LYIWLYRRR 282 (296)
T ss_pred HHHHHHHhh
Confidence 334444444
No 106
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=69.34 E-value=3.4 Score=23.31 Aligned_cols=18 Identities=39% Similarity=0.556 Sum_probs=11.9
Q ss_pred CCCCEEeccCCcCCCCCCC
Q 013710 310 KKLRYLNLQNNNFHGVLPF 328 (437)
Q Consensus 310 ~~L~~L~L~~N~l~~~~~~ 328 (437)
++|++|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 35777777777777 4443
No 107
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=68.76 E-value=6.9 Score=40.28 Aligned_cols=27 Identities=7% Similarity=0.188 Sum_probs=16.9
Q ss_pred ceEEEEehhHHHHHHHHHHHHHHHHhh
Q 013710 409 NKVVLGLAIGLSSIVFLIVFVVLLSKW 435 (437)
Q Consensus 409 ~~~~~~~~i~~~~~~~li~~~~~~~~~ 435 (437)
.++++|+++.+++++++|++++++++|
T Consensus 269 lWII~gVlvPv~vV~~Iiiil~~~LCR 295 (684)
T PF12877_consen 269 LWIIAGVLVPVLVVLLIIIILYWKLCR 295 (684)
T ss_pred eEEEehHhHHHHHHHHHHHHHHHHHhc
Confidence 467777776666666666555555554
No 108
>PF15102 TMEM154: TMEM154 protein family
Probab=68.30 E-value=16 Score=30.31 Aligned_cols=6 Identities=0% Similarity=0.274 Sum_probs=2.3
Q ss_pred EEEEeh
Q 013710 411 VVLGLA 416 (437)
Q Consensus 411 ~~~~~~ 416 (437)
++++|.
T Consensus 59 LmIlIP 64 (146)
T PF15102_consen 59 LMILIP 64 (146)
T ss_pred EEEeHH
Confidence 333443
No 109
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=68.09 E-value=2.5 Score=24.19 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=10.7
Q ss_pred CCCCEEEeecCCCCCCc
Q 013710 167 VNLTDLTVTNVPVNASG 183 (437)
Q Consensus 167 ~~L~~L~ls~n~l~~~~ 183 (437)
++|++|+|++|.+...+
T Consensus 2 ~~L~~LdL~~N~i~~~G 18 (28)
T smart00368 2 PSLRELDLSNNKLGDEG 18 (28)
T ss_pred CccCEEECCCCCCCHHH
Confidence 35667777777665544
No 110
>PHA03265 envelope glycoprotein D; Provisional
Probab=66.86 E-value=3.4 Score=39.05 Aligned_cols=10 Identities=10% Similarity=0.056 Sum_probs=4.0
Q ss_pred HHHHHHHhhc
Q 013710 427 VFVVLLSKWC 436 (437)
Q Consensus 427 ~~~~~~~~~~ 436 (437)
++++++||||
T Consensus 366 ~il~~~~rr~ 375 (402)
T PHA03265 366 VILYVCLRRK 375 (402)
T ss_pred HHHHHHhhhh
Confidence 3334444443
No 111
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=66.38 E-value=11 Score=34.84 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=22.6
Q ss_pred ccCCCCceEEEEehhHHHHHHHHHHHHHHHHhhc
Q 013710 403 EHHHGPNKVVLGLAIGLSSIVFLIVFVVLLSKWC 436 (437)
Q Consensus 403 ~~~~~~~~~~~~~~i~~~~~~~li~~~~~~~~~~ 436 (437)
+.....|++++|+++|+++++++.+++++..+++
T Consensus 207 ~~~~~~W~iv~g~~~G~~~L~ll~~lv~~~vr~k 240 (278)
T PF06697_consen 207 RKRSWWWKIVVGVVGGVVLLGLLSLLVAMLVRYK 240 (278)
T ss_pred CCcceeEEEEEEehHHHHHHHHHHHHHHhhhhhh
Confidence 3345557778888888888888765555544443
No 112
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=66.21 E-value=0.99 Score=33.01 Aligned_cols=17 Identities=18% Similarity=0.657 Sum_probs=6.8
Q ss_pred ehhHHHHHHHHHHHHHH
Q 013710 415 LAIGLSSIVFLIVFVVL 431 (437)
Q Consensus 415 ~~i~~~~~~~li~~~~~ 431 (437)
+++|+++++++++++++
T Consensus 6 ~~~g~~~ll~~v~~~~~ 22 (75)
T PF14575_consen 6 IIVGVLLLLVLVIIVIV 22 (75)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhheeEEE
Confidence 34444444444434333
No 113
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=64.84 E-value=2.1 Score=40.00 Aligned_cols=24 Identities=8% Similarity=0.116 Sum_probs=0.0
Q ss_pred eEEEEehhHHHHHHHHHHHHHHHH
Q 013710 410 KVVLGLAIGLSSIVFLIVFVVLLS 433 (437)
Q Consensus 410 ~~~~~~~i~~~~~~~li~~~~~~~ 433 (437)
.++.+++|+++++++.++++++++
T Consensus 148 T~IpaVVI~~iLLIA~iIa~icyr 171 (290)
T PF05454_consen 148 TFIPAVVIAAILLIAGIIACICYR 171 (290)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444455555444444444444433
No 114
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=62.18 E-value=7 Score=33.94 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=16.6
Q ss_pred ceEEEEehhHHHHHHHHHHHHHHHH
Q 013710 409 NKVVLGLAIGLSSIVFLIVFVVLLS 433 (437)
Q Consensus 409 ~~~~~~~~i~~~~~~~li~~~~~~~ 433 (437)
..+.++++++++++|++|+++++++
T Consensus 74 ~~~~~~iivgvi~~Vi~Iv~~Iv~~ 98 (179)
T PF13908_consen 74 IYFITGIIVGVICGVIAIVVLIVCF 98 (179)
T ss_pred ccceeeeeeehhhHHHHHHHhHhhh
Confidence 3567788888887766665555433
No 115
>PF15102 TMEM154: TMEM154 protein family
Probab=62.13 E-value=2.5 Score=34.90 Aligned_cols=8 Identities=0% Similarity=-0.143 Sum_probs=3.8
Q ss_pred EEEehhHH
Q 013710 412 VLGLAIGL 419 (437)
Q Consensus 412 ~~~~~i~~ 419 (437)
++.++++-
T Consensus 57 fiLmIlIP 64 (146)
T PF15102_consen 57 FILMILIP 64 (146)
T ss_pred eEEEEeHH
Confidence 44444444
No 116
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=60.92 E-value=2.9 Score=29.16 Aligned_cols=28 Identities=11% Similarity=0.183 Sum_probs=0.5
Q ss_pred eEEEEehhHHHHHHHHHH-HHHHHHhhcC
Q 013710 410 KVVLGLAIGLSSIVFLIV-FVVLLSKWCG 437 (437)
Q Consensus 410 ~~~~~~~i~~~~~~~li~-~~~~~~~~~r 437 (437)
.+++|+++|+++.+++++ ++.++.+|.|
T Consensus 9 ~vlaavIaG~Vvgll~ailLIlf~iyR~r 37 (64)
T PF01034_consen 9 EVLAAVIAGGVVGLLFAILLILFLIYRMR 37 (64)
T ss_dssp ----------------------------S
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666665555554 4444555544
No 117
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.91 E-value=22 Score=24.67 Aligned_cols=26 Identities=23% Similarity=0.179 Sum_probs=15.9
Q ss_pred eEEEEehhHHHHHHHHHHHHHHHHhh
Q 013710 410 KVVLGLAIGLSSIVFLIVFVVLLSKW 435 (437)
Q Consensus 410 ~~~~~~~i~~~~~~~li~~~~~~~~~ 435 (437)
+.++.++++.+++++++.-++++.|+
T Consensus 13 GlIVLlvV~g~ll~flvGnyvlY~Ya 38 (69)
T PF04689_consen 13 GLIVLLVVAGLLLVFLVGNYVLYVYA 38 (69)
T ss_pred CeEEeehHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666555554444
No 118
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=60.02 E-value=5.3 Score=38.05 Aligned_cols=18 Identities=11% Similarity=0.325 Sum_probs=8.9
Q ss_pred EEEEehhHHHHHHHHHHH
Q 013710 411 VVLGLAIGLSSIVFLIVF 428 (437)
Q Consensus 411 ~~~~~~i~~~~~~~li~~ 428 (437)
.++.|+||++++++++++
T Consensus 271 ~~vPIaVG~~La~lvliv 288 (306)
T PF01299_consen 271 DLVPIAVGAALAGLVLIV 288 (306)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 345565665544444433
No 119
>PTZ00046 rifin; Provisional
Probab=59.93 E-value=8.3 Score=37.06 Aligned_cols=15 Identities=33% Similarity=0.180 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCCCCC
Q 013710 46 TPRTRTPTPTPVASS 60 (437)
Q Consensus 46 ~~~~~~~c~~~~~~~ 60 (437)
.++++..|.|.--.+
T Consensus 35 ~~TtR~LcECeLY~p 49 (358)
T PTZ00046 35 TTTTRLLCECELYSS 49 (358)
T ss_pred cccchhhhhhhcCCC
Confidence 346678888775543
No 120
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=59.51 E-value=8.5 Score=36.87 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=13.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCChh
Q 013710 46 TPRTRTPTPTPVASSHPSPLDPK 68 (437)
Q Consensus 46 ~~~~~~~c~~~~~~~~~~~~~~~ 68 (437)
.++++..|.|.--. +.-.-||.
T Consensus 38 t~TsR~LcECeLy~-~nYDNDPe 59 (353)
T TIGR01477 38 TKTSRSLCECELYS-SNYDNDPE 59 (353)
T ss_pred ccceehhhhhhccc-ccCCCcHH
Confidence 45778888887655 33333443
No 121
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=58.74 E-value=3.3 Score=34.49 Aligned_cols=31 Identities=13% Similarity=0.064 Sum_probs=20.4
Q ss_pred CCCceEEEEehhHHHHHHHHHHHHHHHHhhcC
Q 013710 406 HGPNKVVLGLAIGLSSIVFLIVFVVLLSKWCG 437 (437)
Q Consensus 406 ~~~~~~~~~~~i~~~~~~~li~~~~~~~~~~r 437 (437)
.-..++++|+.+++++++++++ +++++|++|
T Consensus 49 nIVIGvVVGVGg~ill~il~lv-f~~c~r~kk 79 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLGILALV-FIFCIRRKK 79 (154)
T ss_pred cEEEEEEecccHHHHHHHHHhh-eeEEEeccc
Confidence 4557899998888876655555 445455443
No 122
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=57.48 E-value=3.2 Score=33.40 Aligned_cols=35 Identities=14% Similarity=0.271 Sum_probs=21.3
Q ss_pred cccCCCCceEEEEehhHHHHHHHHHHHHHHHHhhcC
Q 013710 402 KEHHHGPNKVVLGLAIGLSSIVFLIVFVVLLSKWCG 437 (437)
Q Consensus 402 ~~~~~~~~~~~~~~~i~~~~~~~li~~~~~~~~~~r 437 (437)
..+......+++|+++|++++++++.+++ .++++|
T Consensus 60 ~fs~~~i~~Ii~gv~aGvIg~Illi~y~i-rR~~Kk 94 (122)
T PF01102_consen 60 RFSEPAIIGIIFGVMAGVIGIILLISYCI-RRLRKK 94 (122)
T ss_dssp SSS-TCHHHHHHHHHHHHHHHHHHHHHHH-HHHS--
T ss_pred CccccceeehhHHHHHHHHHHHHHHHHHH-HHHhcc
Confidence 33344556788888888887776665555 455554
No 123
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=57.34 E-value=25 Score=27.06 Aligned_cols=22 Identities=5% Similarity=0.084 Sum_probs=10.4
Q ss_pred CCCCceEEEEehhHHHHHHHHH
Q 013710 405 HHGPNKVVLGLAIGLSSIVFLI 426 (437)
Q Consensus 405 ~~~~~~~~~~~~i~~~~~~~li 426 (437)
......+.+++++++.+++.++
T Consensus 65 ~gaiagi~vg~~~~v~~lv~~l 86 (96)
T PTZ00382 65 TGAIAGISVAVVAVVGGLVGFL 86 (96)
T ss_pred cccEEEEEeehhhHHHHHHHHH
Confidence 3344455555554444444333
No 124
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=56.83 E-value=7.1 Score=31.23 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=0.0
Q ss_pred eEEEEehhHHHHHHHHHHHHHHHHhh
Q 013710 410 KVVLGLAIGLSSIVFLIVFVVLLSKW 435 (437)
Q Consensus 410 ~~~~~~~i~~~~~~~li~~~~~~~~~ 435 (437)
..+.+.+.++++++.++.++++|+++
T Consensus 79 ~pi~~sal~v~lVl~llsg~lv~rrc 104 (129)
T PF12191_consen 79 WPILGSALSVVLVLALLSGFLVWRRC 104 (129)
T ss_dssp --------------------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 33333344444444443344444433
No 125
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=56.47 E-value=15 Score=30.18 Aligned_cols=26 Identities=12% Similarity=0.252 Sum_probs=17.4
Q ss_pred ceEEEEehhHHHHHHHHHHHHHHHHh
Q 013710 409 NKVVLGLAIGLSSIVFLIVFVVLLSK 434 (437)
Q Consensus 409 ~~~~~~~~i~~~~~~~li~~~~~~~~ 434 (437)
...++||+.+++++..+++.+.++.+
T Consensus 60 gtAIaGIVfgiVfimgvva~i~icvC 85 (155)
T PF10873_consen 60 GTAIAGIVFGIVFIMGVVAGIAICVC 85 (155)
T ss_pred cceeeeeehhhHHHHHHHHHHHHHHh
Confidence 46778888887777776665555443
No 126
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=56.20 E-value=17 Score=32.00 Aligned_cols=9 Identities=11% Similarity=0.172 Sum_probs=4.3
Q ss_pred EEEEehhHH
Q 013710 411 VVLGLAIGL 419 (437)
Q Consensus 411 ~~~~~~i~~ 419 (437)
+++++++.+
T Consensus 101 ~lI~lv~~g 109 (202)
T PF06365_consen 101 TLIALVTSG 109 (202)
T ss_pred EEEehHHhh
Confidence 444444444
No 127
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=55.84 E-value=8.7 Score=46.49 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=15.7
Q ss_pred cccccCCCCCccccCCCCCCCeeeccCCcCC
Q 013710 269 LASNSLSGSVPESMASLTDMVHLDLSSNQLN 299 (437)
Q Consensus 269 L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~ 299 (437)
|++|+|+...+..|..+.+|++|+|++|.+.
T Consensus 2 LSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 2 ISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 4555555444444555555555555555443
No 128
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=54.82 E-value=3.3 Score=32.37 Aligned_cols=15 Identities=20% Similarity=0.388 Sum_probs=1.5
Q ss_pred EEehhHHHHHHHHHH
Q 013710 413 LGLAIGLSSIVFLIV 427 (437)
Q Consensus 413 ~~~~i~~~~~~~li~ 427 (437)
+||.+.++++.++++
T Consensus 27 aGIGiL~VILgiLLl 41 (118)
T PF14991_consen 27 AGIGILIVILGILLL 41 (118)
T ss_dssp -SSS-----------
T ss_pred ccceeHHHHHHHHHH
Confidence 444444444433333
No 129
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=51.52 E-value=17 Score=31.22 Aligned_cols=30 Identities=7% Similarity=-0.039 Sum_probs=17.7
Q ss_pred CceEEEEehhHHHHHHHHHHHHHHHHhhcC
Q 013710 408 PNKVVLGLAIGLSSIVFLIVFVVLLSKWCG 437 (437)
Q Consensus 408 ~~~~~~~~~i~~~~~~~li~~~~~~~~~~r 437 (437)
..++|.+|+.+++++++-++.-++.+.+||
T Consensus 113 ~~g~IaGIvsav~valvGAvsSyiaYqkKK 142 (169)
T PF12301_consen 113 EAGTIAGIVSAVVVALVGAVSSYIAYQKKK 142 (169)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345666666666666666666666555543
No 130
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=51.06 E-value=9.3 Score=31.49 Aligned_cols=29 Identities=17% Similarity=0.440 Sum_probs=19.6
Q ss_pred ceEEEEehhHHHHHHHHHHHHHHHHhhcC
Q 013710 409 NKVVLGLAIGLSSIVFLIVFVVLLSKWCG 437 (437)
Q Consensus 409 ~~~~~~~~i~~~~~~~li~~~~~~~~~~r 437 (437)
.++++++.+.+++.+++++++.+-.+.+|
T Consensus 119 nklilaisvtvv~~iliii~CLiei~shr 147 (154)
T PF14914_consen 119 NKLILAISVTVVVMILIIIFCLIEICSHR 147 (154)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46677777777777777777766555543
No 131
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=49.56 E-value=10 Score=38.45 Aligned_cols=64 Identities=19% Similarity=0.252 Sum_probs=34.5
Q ss_pred cCCCCCCEEEeecCCCCCCc-hhHhhcCCcCccEEEeeCC--cccc--cCCcccccCccEEEccCCcCC
Q 013710 164 SRFVNLTDLTVTNVPVNASG-LYVIIGNMHKLRSVTISNA--NVTG--YIPKHLHSNLTHVDFSGNQLK 227 (437)
Q Consensus 164 ~~l~~L~~L~ls~n~l~~~~-~~~~l~~l~~L~~L~L~~n--~l~~--~~~~~~~~~L~~L~Ls~n~l~ 227 (437)
.+.+.+..+++++|++.... +...-...++|+.|+|++| .+.. ++.+.-...|++|.+.+|.+.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 35566777777777765433 3333344567777777777 2221 111111155667777777664
No 132
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=44.65 E-value=47 Score=25.79 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=14.7
Q ss_pred EEEEehhHHHHHHHHHHHHHHHH
Q 013710 411 VVLGLAIGLSSIVFLIVFVVLLS 433 (437)
Q Consensus 411 ~~~~~~i~~~~~~~li~~~~~~~ 433 (437)
....++++++++++++++++++.
T Consensus 60 ~~~iili~lls~v~IlVily~Iy 82 (101)
T PF06024_consen 60 NGNIILISLLSFVCILVILYAIY 82 (101)
T ss_pred cccchHHHHHHHHHHHHHHhhhe
Confidence 44566777777777776665544
No 133
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=44.64 E-value=7.3 Score=32.75 Aligned_cols=26 Identities=12% Similarity=0.244 Sum_probs=0.0
Q ss_pred eEEEEehhHHHHHHHHHHHHHHHHhh
Q 013710 410 KVVLGLAIGLSSIVFLIVFVVLLSKW 435 (437)
Q Consensus 410 ~~~~~~~i~~~~~~~li~~~~~~~~~ 435 (437)
..++||++|+++.+.++..++++..|
T Consensus 129 ~tLVGIIVGVLlaIG~igGIIivvvR 154 (162)
T PF05808_consen 129 VTLVGIIVGVLLAIGFIGGIIIVVVR 154 (162)
T ss_dssp --------------------------
T ss_pred eeeeeehhhHHHHHHHHhheeeEEee
Confidence 44678888877777777555554444
No 134
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=43.51 E-value=18 Score=31.74 Aligned_cols=25 Identities=4% Similarity=0.238 Sum_probs=10.3
Q ss_pred eEEEEehhHHHHHHHHHHHHHHHHh
Q 013710 410 KVVLGLAIGLSSIVFLIVFVVLLSK 434 (437)
Q Consensus 410 ~~~~~~~i~~~~~~~li~~~~~~~~ 434 (437)
.+++++-++++++++++++.+++.|
T Consensus 159 ~laI~lPvvv~~~~~~~~~~~~~~R 183 (189)
T PF14610_consen 159 ALAIALPVVVVVLALIMYGFFFWNR 183 (189)
T ss_pred eEEEEccHHHHHHHHHHHhhheeec
Confidence 4444444444444433333333333
No 135
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=41.18 E-value=20 Score=19.80 Aligned_cols=13 Identities=23% Similarity=0.539 Sum_probs=10.9
Q ss_pred CCCCCEEecccCC
Q 013710 120 LSTLQNLTFFNCP 132 (437)
Q Consensus 120 l~~L~~L~L~~n~ 132 (437)
+++|++|+|++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4689999999986
No 136
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=40.64 E-value=38 Score=34.33 Aligned_cols=9 Identities=22% Similarity=0.320 Sum_probs=3.4
Q ss_pred eeEEEccCC
Q 013710 98 LLSLRLSNC 106 (437)
Q Consensus 98 L~~L~Ls~n 106 (437)
+..+-+.++
T Consensus 333 vi~~p~fg~ 341 (574)
T PF07462_consen 333 VIALPLFGN 341 (574)
T ss_pred eeeccCCCC
Confidence 333333333
No 137
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=40.00 E-value=28 Score=30.37 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=14.0
Q ss_pred EEehhHHHHHHHHHHHHHHHHhhcC
Q 013710 413 LGLAIGLSSIVFLIVFVVLLSKWCG 437 (437)
Q Consensus 413 ~~~~i~~~~~~~li~~~~~~~~~~r 437 (437)
..++.|||+++.+..++++.++++|
T Consensus 161 ~SFiGGIVL~LGv~aI~ff~~KF~k 185 (186)
T PF05283_consen 161 ASFIGGIVLTLGVLAIIFFLYKFCK 185 (186)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhcc
Confidence 4555555555555555555555554
No 138
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=39.93 E-value=40 Score=31.62 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=9.4
Q ss_pred ceEEEEehhHHHHHHHHHHH
Q 013710 409 NKVVLGLAIGLSSIVFLIVF 428 (437)
Q Consensus 409 ~~~~~~~~i~~~~~~~li~~ 428 (437)
..|.+++++++.++++++++
T Consensus 228 ~VVlIslAiALG~v~ll~l~ 247 (281)
T PF12768_consen 228 FVVLISLAIALGTVFLLVLI 247 (281)
T ss_pred EEEEEehHHHHHHHHHHHHH
Confidence 34455555554444444433
No 139
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=39.67 E-value=91 Score=37.92 Aligned_cols=19 Identities=16% Similarity=-0.067 Sum_probs=13.0
Q ss_pred EEEecCCCCCCcCcccccc
Q 013710 338 VFKVGGNTNLCYNHTVLSS 356 (437)
Q Consensus 338 ~L~l~~N~~~c~~~~~~~~ 356 (437)
.-...+|-++|.|+..+.+
T Consensus 3916 tCip~~n~f~CnC~~gyTG 3934 (4289)
T KOG1219|consen 3916 TCIPFYNGFLCNCPNGYTG 3934 (4289)
T ss_pred EEEecCCCeeEeCCCCccC
Confidence 3456788889998855443
No 140
>PF11857 DUF3377: Domain of unknown function (DUF3377); InterPro: IPR021805 This domain is functionally uncharacterised and found at the C terminus of peptidases belonging to MEROPS peptidase family M10A, membrane-type matrix metallopeptidases (clan MA). ; GO: 0004222 metalloendopeptidase activity
Probab=39.65 E-value=88 Score=22.66 Aligned_cols=22 Identities=14% Similarity=0.353 Sum_probs=10.7
Q ss_pred EEEehhHHHHHHHHHHHHHHHH
Q 013710 412 VLGLAIGLSSIVFLIVFVVLLS 433 (437)
Q Consensus 412 ~~~~~i~~~~~~~li~~~~~~~ 433 (437)
++++++-++.++.+++.++.++
T Consensus 31 avaVviPl~L~LCiLvl~yai~ 52 (74)
T PF11857_consen 31 AVAVVIPLVLLLCILVLIYAIF 52 (74)
T ss_pred EEEEeHHHHHHHHHHHHHHHhh
Confidence 4455555555555544444433
No 141
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=39.45 E-value=35 Score=20.19 Aligned_cols=9 Identities=33% Similarity=-0.001 Sum_probs=3.4
Q ss_pred HHHHHHhhc
Q 013710 428 FVVLLSKWC 436 (437)
Q Consensus 428 ~~~~~~~~~ 436 (437)
..+++++|+
T Consensus 24 ~~~~~~~rk 32 (34)
T TIGR01167 24 GGLLLRKRK 32 (34)
T ss_pred HHHHheecc
Confidence 333333333
No 142
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=39.18 E-value=37 Score=20.76 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=15.7
Q ss_pred EEehhHHHHHHHHHHHHHHHHhhcC
Q 013710 413 LGLAIGLSSIVFLIVFVVLLSKWCG 437 (437)
Q Consensus 413 ~~~~i~~~~~~~li~~~~~~~~~~r 437 (437)
.|++.|.+.+.++-+++..+...||
T Consensus 7 ~GiVlGli~vtl~Glfv~Ay~QY~R 31 (37)
T PF02529_consen 7 SGIVLGLIPVTLAGLFVAAYLQYRR 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHhc
Confidence 3667777777666666666555444
No 143
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=37.77 E-value=43 Score=20.37 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=16.0
Q ss_pred EEEehhHHHHHHHHHHHHHHHHhhcC
Q 013710 412 VLGLAIGLSSIVFLIVFVVLLSKWCG 437 (437)
Q Consensus 412 ~~~~~i~~~~~~~li~~~~~~~~~~r 437 (437)
..|++.|.+-+.+.-+++..|...||
T Consensus 6 L~GiVLGlipvTl~GlfvaAylQYrR 31 (37)
T CHL00008 6 LFGIVLGLIPITLAGLFVTAYLQYRR 31 (37)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHhh
Confidence 34677777766666666655554444
No 144
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=37.65 E-value=27 Score=34.98 Aligned_cols=179 Identities=16% Similarity=0.096 Sum_probs=83.2
Q ss_pred CCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc-----cCccEEEccCCcCCCCCChhccC---
Q 013710 165 RFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH-----SNLTHVDFSGNQLKGKIPTSITL--- 236 (437)
Q Consensus 165 ~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-----~~L~~L~Ls~n~l~~~~~~~l~~--- 236 (437)
.-..+++++++.|.+.+..... +.. ..--+.+..|..+...-..+. ..+.+++++.|.....++..+..
T Consensus 163 pnpr~r~~dls~npi~dkvpih-l~~--p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~ 239 (553)
T KOG4242|consen 163 PNPRARQHDLSPNPIGDKVPIH-LPQ--PGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAG 239 (553)
T ss_pred CcchhhhhccCCCcccccCCcc-ccC--CCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhh
Confidence 4455677777777765443211 111 011144555544432222111 55677788877777666654332
Q ss_pred CCCCcEEEccCCCCCC---CCCcccCCCcccceeecccccCCC----CCc----cccCCCCCCCeeeccCCcCCCcch-h
Q 013710 237 LENLQHLNLSSNGLNG---EIPSSIGDLIALKNVSLASNSLSG----SVP----ESMASLTDMVHLDLSSNQLNGTIP-R 304 (437)
Q Consensus 237 l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~L~~n~l~~----~~~----~~l~~l~~L~~L~L~~N~l~~~~~-~ 304 (437)
-..++.++.+...+.- ..+-.++.-++++..+++.|.... +.+ +.+..-.++ +|++.+......-+ .
T Consensus 240 ~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks 318 (553)
T KOG4242|consen 240 TLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKS 318 (553)
T ss_pred hhhhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhh
Confidence 2346666666655431 112223444667777777765441 122 233333455 66666555432211 1
Q ss_pred hhcCC-----CCCCEEeccCCcCCCCCC-CCcccCCCCCEEEecCCCCC
Q 013710 305 FFSDL-----KKLRYLNLQNNNFHGVLP-FNASILEKLQVFKVGGNTNL 347 (437)
Q Consensus 305 ~l~~l-----~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~L~l~~N~~~ 347 (437)
.+-.+ ..=-++++..|...+... ..-..=.++++++...|...
T Consensus 319 ~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnld 367 (553)
T KOG4242|consen 319 MLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLD 367 (553)
T ss_pred hhcccccccccccccCChhhccccccchhhccccceeeeEeeccccccc
Confidence 11110 111245566655543211 11111224777777777543
No 145
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=36.85 E-value=44 Score=20.31 Aligned_cols=26 Identities=19% Similarity=0.441 Sum_probs=15.9
Q ss_pred EEEehhHHHHHHHHHHHHHHHHhhcC
Q 013710 412 VLGLAIGLSSIVFLIVFVVLLSKWCG 437 (437)
Q Consensus 412 ~~~~~i~~~~~~~li~~~~~~~~~~r 437 (437)
..|++.|.+-+.+.-+++..|...||
T Consensus 6 L~GiVLGlipiTl~GlfvaAylQYrR 31 (37)
T PRK00665 6 LCGIVLGLIPVTLAGLFVAAWNQYKR 31 (37)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHhc
Confidence 34677777766666666655554444
No 146
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=35.26 E-value=13 Score=35.99 Aligned_cols=28 Identities=11% Similarity=0.202 Sum_probs=14.2
Q ss_pred eEEEEehhHHHHHHHHHHHHHHHHhhcC
Q 013710 410 KVVLGLAIGLSSIVFLIVFVVLLSKWCG 437 (437)
Q Consensus 410 ~~~~~~~i~~~~~~~li~~~~~~~~~~r 437 (437)
.+++++.|-+++++++.++++++.+|||
T Consensus 387 ~i~~avl~p~~il~~~~~~~~~~v~rrr 414 (436)
T PTZ00208 387 MIILAVLVPAIILAIIAVAFFIMVKRRR 414 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHhheeeeecc
Confidence 3344555555555544454555556555
No 147
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=34.31 E-value=24 Score=26.70 Aligned_cols=8 Identities=38% Similarity=0.679 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 013710 418 GLSSIVFL 425 (437)
Q Consensus 418 ~~~~~~~l 425 (437)
++++++++
T Consensus 50 G~iLilIi 57 (98)
T PF07204_consen 50 GLILILII 57 (98)
T ss_pred hhhhHHHH
Confidence 33333333
No 148
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=34.06 E-value=13 Score=37.18 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=0.0
Q ss_pred ceEEEEehhHHHHHHHHHHHHHHHHhhcC
Q 013710 409 NKVVLGLAIGLSSIVFLIVFVVLLSKWCG 437 (437)
Q Consensus 409 ~~~~~~~~i~~~~~~~li~~~~~~~~~~r 437 (437)
..+++|++++++++++++++++..++|||
T Consensus 355 l~vVlgvavlivVv~viv~vc~~~rrrR~ 383 (439)
T PF02480_consen 355 LGVVLGVAVLIVVVGVIVWVCLRCRRRRR 383 (439)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHhheeeeehhccc
Confidence 44556777777777777788888777654
No 149
>PF15345 TMEM51: Transmembrane protein 51
Probab=33.66 E-value=1e+02 Score=27.82 Aligned_cols=15 Identities=13% Similarity=0.321 Sum_probs=5.8
Q ss_pred EEehhHHHHHHHHHHH
Q 013710 413 LGLAIGLSSIVFLIVF 428 (437)
Q Consensus 413 ~~~~i~~~~~~~li~~ 428 (437)
+.++||+ .++++++.
T Consensus 61 AyVLVG~-Gv~LLLLS 75 (233)
T PF15345_consen 61 AYVLVGS-GVALLLLS 75 (233)
T ss_pred EEehhhH-HHHHHHHH
Confidence 3334444 33333333
No 150
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=29.80 E-value=36 Score=24.92 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=15.7
Q ss_pred eEEEEehhHHHHHHHHHHHHHHHH
Q 013710 410 KVVLGLAIGLSSIVFLIVFVVLLS 433 (437)
Q Consensus 410 ~~~~~~~i~~~~~~~li~~~~~~~ 433 (437)
.+.+|++.+=+++.++|+.+++++
T Consensus 34 g~LaGiV~~D~vlTLLIv~~vy~c 57 (79)
T PF07213_consen 34 GLLAGIVAADAVLTLLIVLVVYYC 57 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566777777666666666665555
No 151
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=29.76 E-value=32 Score=27.72 Aligned_cols=19 Identities=0% Similarity=0.109 Sum_probs=6.9
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q 013710 417 IGLSSIVFLIVFVVLLSKW 435 (437)
Q Consensus 417 i~~~~~~~li~~~~~~~~~ 435 (437)
+++.+.+++..+++++++|
T Consensus 107 l~il~~i~is~~~~~~yr~ 125 (139)
T PHA03099 107 VLVLVGIIITCCLLSVYRF 125 (139)
T ss_pred HHHHHHHHHHHHHHhhhee
Confidence 3333333333333333333
No 152
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=29.24 E-value=41 Score=34.83 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=15.9
Q ss_pred ceEEEEehhHHHHHHHHHHHHHHHH
Q 013710 409 NKVVLGLAIGLSSIVFLIVFVVLLS 433 (437)
Q Consensus 409 ~~~~~~~~i~~~~~~~li~~~~~~~ 433 (437)
..+.+++.+++++++++++.+++|+
T Consensus 390 t~~~~~~f~~if~iva~ii~~~L~R 414 (807)
T KOG1094|consen 390 TAILIIIFVAIFLIVALIIALMLWR 414 (807)
T ss_pred ceehHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666655
No 153
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=28.87 E-value=41 Score=30.00 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=7.4
Q ss_pred eEEEEehhHHHHHHHHH
Q 013710 410 KVVLGLAIGLSSIVFLI 426 (437)
Q Consensus 410 ~~~~~~~i~~~~~~~li 426 (437)
.+++-++|+++++.+++
T Consensus 188 ~vilpvvIaliVitl~v 204 (259)
T PF07010_consen 188 SVILPVVIALIVITLSV 204 (259)
T ss_pred chhHHHHHHHHHHHHHH
Confidence 34444444444443333
No 154
>PF08138 Sex_peptide: Sex peptide (SP) family; InterPro: IPR012608 This family consists of Sex Peptides (SP) that are found in Drosophila. On mating, Drosophila females decreases her remating rate and increases her egg-laying rate due, in part, to the transfer of SP from the male to the female. SP are found in seminal fluids transferred from the male to the female during mating. The male seminal fluid proteins are referred to as accessory gland proteins (Acps). The SP is one of the most interesting Acps and plays an important role in reproduction [].; GO: 0005179 hormone activity, 0046008 regulation of female receptivity, post-mating, 0005576 extracellular region; PDB: 2LAQ_A.
Probab=27.83 E-value=29 Score=23.11 Aligned_cols=7 Identities=29% Similarity=0.747 Sum_probs=0.0
Q ss_pred CCCCccH
Q 013710 1 MRPPLPF 7 (437)
Q Consensus 1 ~~~~~~~ 7 (437)
|+.+..+
T Consensus 1 Mk~p~~l 7 (56)
T PF08138_consen 1 MKTPIFL 7 (56)
T ss_dssp -------
T ss_pred CcchHHH
Confidence 4444333
No 155
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=26.69 E-value=57 Score=24.35 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=10.6
Q ss_pred ceEEEEehhHHHHHHHHHHHH
Q 013710 409 NKVVLGLAIGLSSIVFLIVFV 429 (437)
Q Consensus 409 ~~~~~~~~i~~~~~~~li~~~ 429 (437)
..+.+.+++++++.+++.-++
T Consensus 33 Lgm~~lvI~~iFil~Vilwfv 53 (94)
T PF05393_consen 33 LGMWFLVICGIFILLVILWFV 53 (94)
T ss_pred cchhHHHHHHHHHHHHHHHHH
Confidence 344456666665554444333
No 156
>PF11353 DUF3153: Protein of unknown function (DUF3153); InterPro: IPR021499 This family of proteins with unknown function appear to be restricted to Cyanobacteria. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=26.50 E-value=59 Score=28.97 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=13.5
Q ss_pred EehhHHHHHHHHHHHHHHHHhhc
Q 013710 414 GLAIGLSSIVFLIVFVVLLSKWC 436 (437)
Q Consensus 414 ~~~i~~~~~~~li~~~~~~~~~~ 436 (437)
.+.+|.+++++++++.++++|+|
T Consensus 184 ~lgiG~v~I~~l~~~~~~l~~~r 206 (209)
T PF11353_consen 184 PLGIGTVLIVLLILLGFLLRRRR 206 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 44556666666666666655554
No 157
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=25.73 E-value=65 Score=24.38 Aligned_cols=10 Identities=40% Similarity=0.716 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 013710 424 FLIVFVVLLS 433 (437)
Q Consensus 424 ~li~~~~~~~ 433 (437)
++++++|+++
T Consensus 80 f~~~v~yI~~ 89 (92)
T PF03908_consen 80 FLLVVLYILW 89 (92)
T ss_pred HHHHHHHHhh
Confidence 3333333333
No 158
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=25.16 E-value=59 Score=23.69 Aligned_cols=20 Identities=15% Similarity=0.348 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHHhhc
Q 013710 417 IGLSSIVFLIVFVVLLSKWC 436 (437)
Q Consensus 417 i~~~~~~~li~~~~~~~~~~ 436 (437)
++++++++++++++++...+
T Consensus 5 ~~~~g~~~ll~~v~~~~~~~ 24 (75)
T PF14575_consen 5 SIIVGVLLLLVLVIIVIVCF 24 (75)
T ss_dssp HHHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHhheeEEEEE
Confidence 34444444444555555443
No 159
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=24.92 E-value=1e+02 Score=19.50 Aligned_cols=7 Identities=29% Similarity=0.534 Sum_probs=3.3
Q ss_pred CccEEEe
Q 013710 193 KLRSVTI 199 (437)
Q Consensus 193 ~L~~L~L 199 (437)
++++|.+
T Consensus 13 ~l~~L~~ 19 (44)
T PF05725_consen 13 SLKSLIF 19 (44)
T ss_pred CCeEEEE
Confidence 4444444
No 160
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=24.80 E-value=24 Score=33.09 Aligned_cols=28 Identities=7% Similarity=-0.018 Sum_probs=0.0
Q ss_pred eEEEEehhHHHHHHHHHHHHHHHHhhcC
Q 013710 410 KVVLGLAIGLSSIVFLIVFVVLLSKWCG 437 (437)
Q Consensus 410 ~~~~~~~i~~~~~~~li~~~~~~~~~~r 437 (437)
....-+..++++++++++++++++++||
T Consensus 145 yL~T~IpaVVI~~iLLIA~iIa~icyrr 172 (290)
T PF05454_consen 145 YLHTFIPAVVIAAILLIAGIIACICYRR 172 (290)
T ss_dssp ----------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4444444444455555555555666654
No 161
>PF14986 DUF4514: Domain of unknown function (DUF4514)
Probab=24.22 E-value=1.2e+02 Score=20.22 Aligned_cols=27 Identities=11% Similarity=0.286 Sum_probs=16.4
Q ss_pred ceEEEEehhHHHHHHHHHHHHHHHHhh
Q 013710 409 NKVVLGLAIGLSSIVFLIVFVVLLSKW 435 (437)
Q Consensus 409 ~~~~~~~~i~~~~~~~li~~~~~~~~~ 435 (437)
...++|.++++++....+..=+++.|+
T Consensus 21 KYa~IGtalGvaisAgFLaLKicmIrk 47 (61)
T PF14986_consen 21 KYAIIGTALGVAISAGFLALKICMIRK 47 (61)
T ss_pred eeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 466778887776665555544554444
No 162
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=24.20 E-value=1.2e+02 Score=31.03 Aligned_cols=8 Identities=13% Similarity=0.148 Sum_probs=3.1
Q ss_pred cccccccc
Q 013710 73 LQSLNIPS 80 (437)
Q Consensus 73 L~~l~~~~ 80 (437)
+..+.+.+
T Consensus 333 vi~~p~fg 340 (574)
T PF07462_consen 333 VIALPLFG 340 (574)
T ss_pred eeeccCCC
Confidence 33444333
No 163
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=23.43 E-value=14 Score=35.20 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=16.9
Q ss_pred ceEEEEehhHHHHHHHHHHHHHH
Q 013710 409 NKVVLGLAIGLSSIVFLIVFVVL 431 (437)
Q Consensus 409 ~~~~~~~~i~~~~~~~li~~~~~ 431 (437)
.-+++|+++++++++++++.++.
T Consensus 273 vPIaVG~~La~lvlivLiaYli~ 295 (306)
T PF01299_consen 273 VPIAVGAALAGLVLIVLIAYLIG 295 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhheeE
Confidence 46678999888888887765544
No 164
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=23.27 E-value=1.6e+02 Score=26.21 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=13.2
Q ss_pred CCceEEEEehhHHHHHHHHHHHHHHHH
Q 013710 407 GPNKVVLGLAIGLSSIVFLIVFVVLLS 433 (437)
Q Consensus 407 ~~~~~~~~~~i~~~~~~~li~~~~~~~ 433 (437)
-..++++|+++++++++++++ +-+++
T Consensus 39 I~iaiVAG~~tVILVI~i~v~-vR~CR 64 (221)
T PF08374_consen 39 IMIAIVAGIMTVILVIFIVVL-VRYCR 64 (221)
T ss_pred eeeeeecchhhhHHHHHHHHH-HHHHh
Confidence 344555555555555544444 45444
No 165
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=23.10 E-value=1.3e+02 Score=23.29 Aligned_cols=27 Identities=11% Similarity=0.298 Sum_probs=15.6
Q ss_pred eEEEEehhHHHHHHHHHHHHHHHHhhc
Q 013710 410 KVVLGLAIGLSSIVFLIVFVVLLSKWC 436 (437)
Q Consensus 410 ~~~~~~~i~~~~~~~li~~~~~~~~~~ 436 (437)
+-.|.+.||++++++++-+++.+.-+|
T Consensus 14 g~sW~~LVGVv~~al~~SlLIalaaKC 40 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALAAKC 40 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHHh
Confidence 445666666666666665555544443
No 166
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=23.01 E-value=69 Score=33.34 Aligned_cols=27 Identities=15% Similarity=0.313 Sum_probs=14.8
Q ss_pred ceEEEEehhHHHHHHHHHHHHHHHHhhc
Q 013710 409 NKVVLGLAIGLSSIVFLIVFVVLLSKWC 436 (437)
Q Consensus 409 ~~~~~~~~i~~~~~~~li~~~~~~~~~~ 436 (437)
..-+|.|+.++ +-++++++++++.+|+
T Consensus 266 ~~NlWII~gVl-vPv~vV~~Iiiil~~~ 292 (684)
T PF12877_consen 266 PNNLWIIAGVL-VPVLVVLLIIIILYWK 292 (684)
T ss_pred CCCeEEEehHh-HHHHHHHHHHHHHHHH
Confidence 36666666554 5555555555555553
No 167
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=22.36 E-value=29 Score=31.98 Aligned_cols=27 Identities=22% Similarity=0.127 Sum_probs=0.0
Q ss_pred eEEEEehhHHHHHHHHHHHHHHHHhhc
Q 013710 410 KVVLGLAIGLSSIVFLIVFVVLLSKWC 436 (437)
Q Consensus 410 ~~~~~~~i~~~~~~~li~~~~~~~~~~ 436 (437)
..++.+.|..|++|++.+....|++||
T Consensus 225 ~~vf~lLVPSiILVLLaVGGLLfYr~r 251 (285)
T PF05337_consen 225 GFVFYLLVPSIILVLLAVGGLLFYRRR 251 (285)
T ss_dssp ---------------------------
T ss_pred cccccccccchhhhhhhccceeeeccc
Confidence 344445555555555555544444443
No 168
>COG3889 Predicted solute binding protein [General function prediction only]
Probab=20.83 E-value=1.6e+02 Score=31.56 Aligned_cols=23 Identities=30% Similarity=0.250 Sum_probs=9.9
Q ss_pred EehhHHH-HHHHHHHHHHHHHhhc
Q 013710 414 GLAIGLS-SIVFLIVFVVLLSKWC 436 (437)
Q Consensus 414 ~~~i~~~-~~~~li~~~~~~~~~~ 436 (437)
+.+++.+ ++++++++.++.+|||
T Consensus 848 ~~i~g~i~iiv~LaAla~lLrRRr 871 (872)
T COG3889 848 GGICGPIVIIVGLAALALLLRRRR 871 (872)
T ss_pred cccchHHHHHHHHHHHHHHHHhhc
Confidence 3344444 4444444444444443
No 169
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=20.72 E-value=86 Score=30.61 Aligned_cols=20 Identities=20% Similarity=0.285 Sum_probs=8.0
Q ss_pred EEEehhHHHHHHHHHHHHHH
Q 013710 412 VLGLAIGLSSIVFLIVFVVL 431 (437)
Q Consensus 412 ~~~~~i~~~~~~~li~~~~~ 431 (437)
+++++.+++++++++.++|+
T Consensus 300 ~i~v~~~~vli~vl~~~~~~ 319 (361)
T PF12259_consen 300 HIAVCGAIVLIIVLISLAWL 319 (361)
T ss_pred EEehhHHHHHHHHHHHHHhh
Confidence 33444444444333344443
Done!