Query 013710
Match_columns 437
No_of_seqs 680 out of 4008
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 15:39:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013710.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013710hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v47_A TOLL-like receptor 5B a 100.0 1.6E-31 5.4E-36 268.3 21.3 145 215-359 276-422 (455)
2 1ogq_A PGIP-2, polygalacturona 100.0 1.8E-32 6E-37 261.9 12.7 255 86-350 40-307 (313)
3 3zyj_A Leucine-rich repeat-con 100.0 2.8E-31 9.7E-36 265.6 21.6 273 96-394 64-340 (440)
4 3zyi_A Leucine-rich repeat-con 100.0 4.9E-31 1.7E-35 264.7 20.1 267 96-388 75-345 (452)
5 2id5_A Lingo-1, leucine rich r 100.0 8.2E-31 2.8E-35 264.9 21.6 258 90-351 74-337 (477)
6 4g8a_A TOLL-like receptor 4; l 100.0 3E-30 1E-34 269.1 24.0 151 237-387 468-622 (635)
7 3t6q_A CD180 antigen; protein- 100.0 1.2E-30 4E-35 271.5 17.4 311 70-386 277-601 (606)
8 2z66_A Variable lymphocyte rec 100.0 5.7E-31 2E-35 250.5 12.9 266 96-384 28-300 (306)
9 3v47_A TOLL-like receptor 5B a 100.0 2.4E-29 8.3E-34 252.4 25.2 278 71-354 30-391 (455)
10 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-29 3.7E-34 267.8 22.1 302 91-393 324-672 (680)
11 3rgz_A Protein brassinosteroid 100.0 7.9E-30 2.7E-34 272.2 19.8 250 95-348 393-718 (768)
12 3rgz_A Protein brassinosteroid 100.0 3.8E-30 1.3E-34 274.7 17.0 276 70-351 393-744 (768)
13 3j0a_A TOLL-like receptor 5; m 100.0 4E-29 1.4E-33 269.4 23.0 300 71-386 266-602 (844)
14 2id5_A Lingo-1, leucine rich r 100.0 9.6E-29 3.3E-33 249.7 23.5 278 71-353 32-315 (477)
15 1xku_A Decorin; proteoglycan, 100.0 2E-28 7E-33 235.4 24.3 246 71-348 52-307 (330)
16 2z80_A TOLL-like receptor 2, v 100.0 1.1E-29 3.7E-34 246.6 14.8 264 71-359 52-328 (353)
17 3vq2_A TLR4, TOLL-like recepto 100.0 9.7E-30 3.3E-34 264.5 15.4 302 67-386 281-599 (606)
18 3o6n_A APL1; leucine-rich repe 100.0 2.7E-28 9.2E-33 240.0 22.2 269 68-352 66-357 (390)
19 2ft3_A Biglycan; proteoglycan, 100.0 2.2E-28 7.5E-33 235.4 20.6 246 71-348 54-308 (332)
20 1ozn_A Reticulon 4 receptor; N 100.0 6.4E-29 2.2E-33 233.9 16.3 258 99-385 14-275 (285)
21 4fcg_A Uncharacterized protein 100.0 2.4E-28 8.2E-33 234.7 19.8 223 95-346 80-313 (328)
22 2z7x_B TOLL-like receptor 1, v 100.0 2.6E-28 8.9E-33 249.2 19.3 167 190-359 322-495 (520)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.1E-27 1.1E-31 243.6 23.9 157 191-351 352-514 (562)
24 2z63_A TOLL-like receptor 4, v 100.0 6.2E-28 2.1E-32 248.9 18.1 185 166-351 346-535 (570)
25 3oja_B Anopheles plasmodium-re 100.0 3.5E-27 1.2E-31 244.8 22.5 268 69-351 73-362 (597)
26 3j0a_A TOLL-like receptor 5; m 99.9 8.1E-27 2.8E-31 251.4 23.6 274 72-348 25-376 (844)
27 2z81_A CD282 antigen, TOLL-lik 99.9 1.1E-27 3.8E-32 246.1 15.8 167 189-359 331-524 (549)
28 3t6q_A CD180 antigen; protein- 99.9 5.5E-27 1.9E-31 243.8 21.1 274 72-351 255-540 (606)
29 3vq2_A TLR4, TOLL-like recepto 99.9 3.2E-26 1.1E-30 238.0 25.3 110 68-181 53-167 (606)
30 1p9a_G Platelet glycoprotein I 99.9 1.3E-26 4.5E-31 218.7 18.9 190 167-359 31-221 (290)
31 2z7x_B TOLL-like receptor 1, v 99.9 3.7E-26 1.3E-30 233.2 23.2 110 236-347 322-434 (520)
32 1xku_A Decorin; proteoglycan, 99.9 1.4E-25 4.7E-30 215.7 25.2 225 96-351 52-280 (330)
33 2o6q_A Variable lymphocyte rec 99.9 4.1E-26 1.4E-30 213.1 20.9 216 82-351 3-222 (270)
34 3o6n_A APL1; leucine-rich repe 99.9 1.6E-26 5.4E-31 227.4 19.0 269 68-349 42-333 (390)
35 1ozn_A Reticulon 4 receptor; N 99.9 1E-26 3.4E-31 218.9 16.0 235 95-354 31-268 (285)
36 4fmz_A Internalin; leucine ric 99.9 1.6E-25 5.5E-30 216.5 24.5 259 68-349 63-326 (347)
37 2z66_A Variable lymphocyte rec 99.9 1.8E-27 6.2E-32 226.3 10.3 261 71-356 28-296 (306)
38 4eco_A Uncharacterized protein 99.9 1.3E-26 4.6E-31 242.0 17.1 275 67-348 202-527 (636)
39 1ogq_A PGIP-2, polygalacturona 99.9 8.9E-28 3.1E-32 229.3 7.3 244 71-324 50-306 (313)
40 4eco_A Uncharacterized protein 99.9 2.1E-26 7.2E-31 240.5 18.3 264 69-345 247-547 (636)
41 3zyj_A Leucine-rich repeat-con 99.9 8E-26 2.7E-30 226.0 20.7 226 71-323 64-292 (440)
42 4fcg_A Uncharacterized protein 99.9 3.5E-26 1.2E-30 219.6 17.3 223 71-323 81-314 (328)
43 1ziw_A TOLL-like receptor 3; i 99.9 8E-26 2.7E-30 238.2 21.4 273 68-345 46-364 (680)
44 3oja_B Anopheles plasmodium-re 99.9 4.6E-26 1.6E-30 236.4 18.8 281 69-361 49-351 (597)
45 2z63_A TOLL-like receptor 4, v 99.9 2.1E-25 7.3E-30 229.9 23.6 112 236-348 371-484 (570)
46 2z81_A CD282 antigen, TOLL-lik 99.9 9.3E-26 3.2E-30 231.7 20.3 107 239-347 311-423 (549)
47 2ft3_A Biglycan; proteoglycan, 99.9 2.3E-25 7.7E-30 214.3 21.6 244 72-351 34-281 (332)
48 4fmz_A Internalin; leucine ric 99.9 3.8E-25 1.3E-29 213.9 22.9 257 67-346 84-345 (347)
49 2z62_A TOLL-like receptor 4, v 99.9 7.1E-26 2.4E-30 212.1 16.9 185 165-351 50-241 (276)
50 3o53_A Protein LRIM1, AGAP0063 99.9 1.3E-26 4.5E-31 221.6 11.1 224 92-351 30-254 (317)
51 3zyi_A Leucine-rich repeat-con 99.9 2.3E-25 8E-30 223.4 20.6 227 71-324 75-304 (452)
52 4ecn_A Leucine-rich repeat pro 99.9 1.2E-25 4.1E-30 240.0 18.6 263 69-345 489-787 (876)
53 1o6v_A Internalin A; bacterial 99.9 1.8E-24 6.1E-29 217.8 26.1 256 68-346 65-343 (466)
54 3oja_A Leucine-rich immune mol 99.9 2.6E-26 9.1E-31 232.2 11.3 224 92-351 30-254 (487)
55 4ecn_A Leucine-rich repeat pro 99.9 8.7E-25 3E-29 233.4 22.2 274 67-348 444-767 (876)
56 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-24 4.1E-29 224.2 22.3 128 71-209 52-188 (562)
57 1o6v_A Internalin A; bacterial 99.9 2.3E-23 7.7E-28 209.8 25.9 260 66-349 41-324 (466)
58 1wwl_A Monocyte differentiatio 99.9 6.5E-26 2.2E-30 216.3 5.7 221 98-347 65-309 (312)
59 3oja_A Leucine-rich immune mol 99.9 9.3E-26 3.2E-30 228.1 6.6 243 70-351 33-286 (487)
60 3bz5_A Internalin-J, INLJ; leu 99.9 1.1E-23 3.9E-28 211.1 21.4 152 188-348 166-332 (457)
61 3rfs_A Internalin B, repeat mo 99.9 3.4E-24 1.2E-28 200.2 15.9 205 94-333 39-245 (272)
62 2z80_A TOLL-like receptor 2, v 99.9 1.3E-24 4.6E-29 210.8 12.8 232 96-351 52-294 (353)
63 3bz5_A Internalin-J, INLJ; leu 99.9 4.2E-23 1.4E-27 207.0 23.9 174 162-348 165-353 (457)
64 2z62_A TOLL-like receptor 4, v 99.9 5.3E-24 1.8E-28 199.3 16.2 206 96-326 28-240 (276)
65 3o53_A Protein LRIM1, AGAP0063 99.9 9.4E-26 3.2E-30 215.6 3.9 237 70-345 33-273 (317)
66 3rfs_A Internalin B, repeat mo 99.9 1.5E-23 5.2E-28 195.8 17.7 184 163-351 37-222 (272)
67 2v9t_B SLIT homolog 2 protein 99.9 2.8E-24 9.6E-29 194.3 12.1 199 195-396 14-213 (220)
68 3m19_A Variable lymphocyte rec 99.9 1.9E-23 6.6E-28 192.7 17.1 188 167-358 14-205 (251)
69 4g8a_A TOLL-like receptor 4; l 99.9 6.3E-23 2.1E-27 213.7 22.1 132 72-207 53-188 (635)
70 1wwl_A Monocyte differentiatio 99.9 3.4E-24 1.2E-28 204.4 10.2 208 94-325 93-311 (312)
71 2v70_A SLIT-2, SLIT homolog 2 99.9 8.8E-24 3E-28 191.0 11.3 199 194-395 13-213 (220)
72 1p9a_G Platelet glycoprotein I 99.9 1.1E-22 3.6E-27 191.9 18.7 201 93-324 7-209 (290)
73 2ca6_A RAN GTPase-activating p 99.9 2.8E-24 9.5E-29 211.1 4.1 248 91-350 27-319 (386)
74 2o6q_A Variable lymphocyte rec 99.9 5.1E-22 1.7E-26 185.2 19.3 183 96-324 37-219 (270)
75 1h6u_A Internalin H; cell adhe 99.9 2.5E-22 8.5E-27 191.0 16.7 190 94-323 39-230 (308)
76 4glp_A Monocyte differentiatio 99.9 1.9E-22 6.4E-27 192.1 15.4 224 97-347 65-307 (310)
77 4glp_A Monocyte differentiatio 99.9 1.4E-22 4.9E-27 192.8 12.7 204 95-324 90-308 (310)
78 2xwt_C Thyrotropin receptor; s 99.9 5.6E-22 1.9E-26 181.4 15.0 152 188-345 76-237 (239)
79 1h6u_A Internalin H; cell adhe 99.9 7.1E-22 2.4E-26 187.9 16.2 208 101-350 24-233 (308)
80 2xwt_C Thyrotropin receptor; s 99.9 6.5E-22 2.2E-26 181.0 14.4 190 168-361 32-232 (239)
81 3m19_A Variable lymphocyte rec 99.9 3.1E-21 1.1E-25 177.9 18.0 178 122-325 15-194 (251)
82 1jl5_A Outer protein YOPM; leu 99.9 5.5E-21 1.9E-25 191.4 20.8 240 71-348 111-371 (454)
83 1z7x_W Ribonuclease inhibitor; 99.9 1.2E-24 4E-29 218.6 -6.3 181 167-347 199-411 (461)
84 3g06_A SSPH2 (leucine-rich rep 99.9 3.1E-20 1.1E-24 192.0 26.2 237 71-351 61-301 (622)
85 1z7x_W Ribonuclease inhibitor; 99.9 3E-24 1E-28 215.5 -4.0 180 166-345 141-352 (461)
86 1jl5_A Outer protein YOPM; leu 99.9 2.3E-20 7.7E-25 186.9 23.8 261 71-369 91-371 (454)
87 3e6j_A Variable lymphocyte rec 99.9 5E-21 1.7E-25 174.0 16.5 157 193-351 20-176 (229)
88 3goz_A Leucine-rich repeat-con 99.9 2.8E-22 9.5E-27 195.1 7.1 237 94-349 20-299 (362)
89 2ca6_A RAN GTPase-activating p 99.8 1.6E-22 5.4E-27 198.6 2.6 241 69-327 30-320 (386)
90 2ast_B S-phase kinase-associat 99.8 2.5E-22 8.7E-27 193.1 3.3 221 97-344 48-282 (336)
91 4ay9_X Follicle-stimulating ho 99.8 6.1E-21 2.1E-25 184.8 12.4 227 96-351 30-262 (350)
92 2o6s_A Variable lymphocyte rec 99.8 5.5E-20 1.9E-24 164.5 17.3 156 195-351 10-165 (208)
93 2ast_B S-phase kinase-associat 99.8 1E-21 3.4E-26 188.9 6.1 225 96-348 70-307 (336)
94 2xot_A Amphoterin-induced prot 99.8 4.1E-21 1.4E-25 186.8 9.7 178 170-351 21-206 (361)
95 1w8a_A SLIT protein; signaling 99.8 2.2E-20 7.6E-25 165.0 12.4 175 217-396 11-187 (192)
96 3cvr_A Invasion plasmid antige 99.8 1.4E-20 4.8E-25 192.4 12.5 187 97-333 60-253 (571)
97 3goz_A Leucine-rich repeat-con 99.8 2.8E-21 9.6E-26 188.0 6.4 227 100-345 2-264 (362)
98 2o6s_A Variable lymphocyte rec 99.8 7.6E-20 2.6E-24 163.6 14.4 162 166-335 27-190 (208)
99 2wfh_A SLIT homolog 2 protein 99.8 5E-20 1.7E-24 162.8 11.9 172 217-394 13-185 (193)
100 3g06_A SSPH2 (leucine-rich rep 99.8 1.7E-18 5.9E-23 179.0 25.0 231 72-348 41-275 (622)
101 1h6t_A Internalin B; cell adhe 99.8 1.5E-19 5.1E-24 170.4 13.9 170 95-324 45-214 (291)
102 3cvr_A Invasion plasmid antige 99.8 7.4E-19 2.5E-23 179.7 17.7 181 122-351 60-247 (571)
103 1h6t_A Internalin B; cell adhe 99.8 3.8E-19 1.3E-23 167.5 13.5 173 163-350 42-216 (291)
104 4ay9_X Follicle-stimulating ho 99.8 3.5E-19 1.2E-23 172.4 12.9 219 99-347 12-236 (350)
105 1m9s_A Internalin B; cell inva 99.8 1.8E-19 6.2E-24 186.0 11.3 193 68-301 18-212 (605)
106 2v70_A SLIT-2, SLIT homolog 2 99.8 1.3E-18 4.4E-23 157.1 13.8 153 170-326 14-169 (220)
107 2xot_A Amphoterin-induced prot 99.8 5.9E-19 2E-23 171.5 12.2 156 167-323 39-202 (361)
108 2v9t_B SLIT homolog 2 protein 99.8 1.7E-18 5.8E-23 156.2 13.3 151 170-324 14-166 (220)
109 1m9s_A Internalin B; cell inva 99.8 3.2E-18 1.1E-22 176.7 15.2 147 164-323 62-210 (605)
110 4ezg_A Putative uncharacterize 99.8 3.2E-18 1.1E-22 151.6 12.9 149 190-346 42-193 (197)
111 3e6j_A Variable lymphocyte rec 99.8 8.3E-18 2.8E-22 152.7 14.5 153 168-325 20-174 (229)
112 4ezg_A Putative uncharacterize 99.8 2.2E-18 7.4E-23 152.8 10.0 153 163-324 40-195 (197)
113 1xeu_A Internalin C; cellular 99.7 2.3E-18 8E-23 159.7 9.1 171 165-351 17-189 (263)
114 1w8a_A SLIT protein; signaling 99.7 3.4E-18 1.2E-22 150.9 9.4 159 195-355 11-170 (192)
115 1xeu_A Internalin C; cellular 99.7 1.8E-18 6.2E-23 160.4 7.9 168 97-301 20-187 (263)
116 1dce_A Protein (RAB geranylger 99.7 1.1E-19 3.7E-24 186.5 -3.7 152 184-341 401-567 (567)
117 3ogk_B Coronatine-insensitive 99.7 5.1E-19 1.7E-23 183.0 1.3 184 163-347 314-526 (592)
118 3ogk_B Coronatine-insensitive 99.7 4.3E-19 1.5E-23 183.6 -0.7 295 69-368 162-526 (592)
119 2o6r_A Variable lymphocyte rec 99.7 1.1E-16 3.6E-21 139.2 14.1 133 216-351 9-141 (177)
120 2wfh_A SLIT homolog 2 protein 99.7 1.2E-16 4.2E-21 140.9 13.0 128 195-324 13-140 (193)
121 2ell_A Acidic leucine-rich nuc 99.7 1.7E-16 5.9E-21 136.6 12.2 130 192-323 24-160 (168)
122 2o6r_A Variable lymphocyte rec 99.7 4.4E-16 1.5E-20 135.3 14.4 133 194-327 9-141 (177)
123 2ell_A Acidic leucine-rich nuc 99.7 7.3E-17 2.5E-21 139.0 8.7 132 214-347 24-160 (168)
124 2je0_A Acidic leucine-rich nuc 99.7 6.5E-17 2.2E-21 136.4 8.2 128 214-343 17-149 (149)
125 4b8c_D Glucose-repressible alc 99.7 9.1E-18 3.1E-22 177.3 2.8 174 161-345 218-402 (727)
126 2p1m_B Transport inhibitor res 99.7 2.8E-18 9.5E-23 177.5 -1.9 180 165-346 287-518 (594)
127 4b8c_D Glucose-repressible alc 99.7 2.6E-17 8.8E-22 173.9 5.1 143 184-330 216-361 (727)
128 2je0_A Acidic leucine-rich nuc 99.6 3.8E-16 1.3E-20 131.6 8.0 127 191-319 16-149 (149)
129 1dce_A Protein (RAB geranylger 99.6 5.7E-18 2E-22 173.7 -4.1 178 164-349 346-548 (567)
130 2p1m_B Transport inhibitor res 99.6 9.9E-18 3.4E-22 173.4 -2.8 155 190-345 370-542 (594)
131 3g39_A Variable lymphocyte rec 99.6 3.1E-15 1.1E-19 129.1 11.8 110 239-351 10-119 (170)
132 3sb4_A Hypothetical leucine ri 99.6 8.3E-16 2.8E-20 147.3 7.7 246 67-341 21-328 (329)
133 2r9u_A Variable lymphocyte rec 99.6 9E-15 3.1E-19 126.6 11.7 109 240-351 14-122 (174)
134 1a9n_A U2A', U2A'; complex (nu 99.6 4E-15 1.4E-19 129.1 7.4 128 190-322 17-152 (176)
135 1a9n_A U2A', U2A'; complex (nu 99.6 4.4E-15 1.5E-19 128.9 7.6 127 214-346 19-152 (176)
136 3sb4_A Hypothetical leucine ri 99.5 1E-14 3.5E-19 139.6 8.2 241 70-317 48-328 (329)
137 1ds9_A Outer arm dynein; leuci 99.5 8.3E-17 2.8E-21 142.6 -6.2 122 214-340 48-180 (198)
138 2ifg_A High affinity nerve gro 99.5 3.2E-14 1.1E-18 137.1 10.8 116 241-359 11-129 (347)
139 3g39_A Variable lymphocyte rec 99.5 8E-14 2.7E-18 120.2 11.4 104 217-323 12-115 (170)
140 4fdw_A Leucine rich hypothetic 99.5 4.7E-13 1.6E-17 131.3 17.3 171 167-344 203-380 (401)
141 1ds9_A Outer arm dynein; leuci 99.5 4.1E-16 1.4E-20 138.1 -5.0 153 165-324 16-186 (198)
142 2r9u_A Variable lymphocyte rec 99.5 1.9E-13 6.4E-18 118.3 11.5 86 238-323 33-118 (174)
143 4fdw_A Leucine rich hypothetic 99.4 4.3E-12 1.5E-16 124.5 17.6 235 96-346 113-357 (401)
144 3un9_A NLR family member X1; l 99.4 3.6E-15 1.2E-19 145.0 -4.9 85 167-251 101-196 (372)
145 3un9_A NLR family member X1; l 99.4 3.5E-14 1.2E-18 138.1 0.2 166 165-330 70-259 (372)
146 2ifg_A High affinity nerve gro 99.3 1.2E-12 4E-17 126.1 7.3 100 197-299 13-116 (347)
147 4gt6_A Cell surface protein; l 99.0 2.3E-08 7.9E-13 97.8 18.0 111 231-345 258-368 (394)
148 2ra8_A Uncharacterized protein 98.9 3.8E-10 1.3E-14 108.8 4.2 84 260-345 250-341 (362)
149 4fs7_A Uncharacterized protein 98.9 1.4E-08 4.8E-13 99.3 15.0 218 113-344 154-376 (394)
150 4fs7_A Uncharacterized protein 98.9 1.5E-08 5.1E-13 99.1 14.9 177 158-344 153-353 (394)
151 2ra8_A Uncharacterized protein 98.9 7.2E-10 2.5E-14 106.9 4.3 63 284-346 250-319 (362)
152 1io0_A Tropomodulin; LRR prote 98.7 1.7E-09 5.7E-14 94.3 1.2 120 162-299 31-164 (185)
153 4h09_A Hypothetical leucine ri 98.7 3.2E-07 1.1E-11 89.0 16.4 127 214-344 217-343 (379)
154 3rfe_A Platelet glycoprotein I 98.7 6.3E-09 2.2E-13 84.9 3.3 103 290-394 12-116 (130)
155 4gt6_A Cell surface protein; l 98.7 2.5E-07 8.5E-12 90.4 14.6 124 214-344 265-388 (394)
156 1io0_A Tropomodulin; LRR prote 98.6 2.8E-09 9.6E-14 92.8 -0.6 122 184-323 28-164 (185)
157 3e4g_A ATP synthase subunit S, 98.3 4.3E-07 1.5E-11 77.5 3.6 87 263-349 62-154 (176)
158 3rw6_A Nuclear RNA export fact 98.2 5E-07 1.7E-11 82.8 3.4 39 237-275 169-209 (267)
159 4h09_A Hypothetical leucine ri 98.2 2.9E-05 9.9E-10 75.0 16.0 113 229-344 208-320 (379)
160 3rw6_A Nuclear RNA export fact 98.2 7.2E-07 2.5E-11 81.7 4.2 79 260-340 168-257 (267)
161 3e4g_A ATP synthase subunit S, 98.2 5E-07 1.7E-11 77.0 2.2 83 214-296 61-149 (176)
162 1pgv_A TMD-1, tropomodulin TMD 97.9 2E-06 7E-11 74.6 1.5 87 162-248 36-136 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.8 6.3E-06 2.2E-10 71.5 2.3 88 234-321 66-168 (197)
164 3rfe_A Platelet glycoprotein I 97.0 0.00093 3.2E-08 53.9 6.1 56 196-251 12-68 (130)
165 2k1k_A Ephrin type-A receptor 95.2 0.0045 1.5E-07 37.6 0.7 29 409-437 10-38 (38)
166 2ks1_B Epidermal growth factor 93.7 0.023 7.8E-07 35.7 1.3 27 410-436 12-38 (44)
167 2l2t_A Receptor tyrosine-prote 93.0 0.023 7.9E-07 35.5 0.5 28 410-437 11-38 (44)
168 2jwa_A Receptor tyrosine-prote 91.5 0.054 1.8E-06 33.8 0.9 27 411-437 13-39 (44)
169 1iij_A ERBB-2 receptor protein 77.1 0.69 2.4E-05 27.2 0.6 22 416-437 14-35 (35)
170 2l34_A TYRO protein tyrosine k 66.1 1.6 5.4E-05 25.4 0.5 26 410-435 7-32 (33)
171 2l9u_A Receptor tyrosine-prote 65.5 4.3 0.00015 23.4 2.2 20 417-436 14-33 (40)
172 2ks1_B Epidermal growth factor 56.2 6.3 0.00022 24.5 2.0 25 412-436 10-35 (44)
173 2lz0_A Uncharacterized protein 54.4 35 0.0012 25.2 6.3 48 224-272 6-53 (100)
174 2llm_A Amyloid beta A4 protein 59.0 2.7 9.3E-05 25.7 0.0 27 410-436 17-43 (43)
175 2l8s_A Integrin alpha-1; trans 52.1 4.2 0.00014 26.5 0.7 19 412-430 13-31 (54)
176 1vf5_G Protein PET G; photosyn 47.7 17 0.00059 21.3 2.7 27 411-437 5-31 (37)
177 2knc_A Integrin alpha-IIB; tra 46.8 4.2 0.00014 26.5 0.0 17 414-430 18-34 (54)
178 2lz0_A Uncharacterized protein 38.9 42 0.0014 24.8 4.6 40 303-343 13-52 (100)
179 1q90_G Cytochrome B6F complex 35.6 27 0.00093 20.4 2.3 25 413-437 7-31 (37)
180 2lp1_A C99; alzheimer'S D memb 31.0 15 0.00052 27.8 0.0 25 411-435 31-55 (122)
No 1
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.98 E-value=1.6e-31 Score=268.32 Aligned_cols=145 Identities=23% Similarity=0.234 Sum_probs=129.7
Q ss_pred CccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeecc
Q 013710 215 NLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLS 294 (437)
Q Consensus 215 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 294 (437)
+|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|+|+
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 355 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLS 355 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECC
Confidence 57777777788877778889999999999999999998888899999999999999999998788899999999999999
Q ss_pred CCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCc--cccccccc
Q 013710 295 SNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNH--TVLSSKLK 359 (437)
Q Consensus 295 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~--~~~~~~~~ 359 (437)
+|++++..+..+.++++|++|++++|++++..+..+..+++|+.|++++|++.|+|+ .++..|..
T Consensus 356 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~ 422 (455)
T 3v47_A 356 YNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 422 (455)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHH
T ss_pred CCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHHHHHHH
Confidence 999998889999999999999999999998777777899999999999999999997 33444543
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.98 E-value=1.8e-32 Score=261.93 Aligned_cols=255 Identities=26% Similarity=0.363 Sum_probs=153.9
Q ss_pred ccccCCCCCCCCeeEEEccCCCCCC--cCChhhhCCCCCCCEEeccc-CCCCCCCCCchhhhccccccccccCC----C-
Q 013710 86 LYKCDSSKPFSHLLSLRLSNCSDDI--SLSSTALKSLSTLQNLTFFN-CPIAPIHFPNDLSLSLLSFSCIHSLH----H- 157 (437)
Q Consensus 86 ~~~~~~~~~l~~L~~L~Ls~n~~~~--~~~~~~~~~l~~L~~L~L~~-n~l~~i~lp~~l~~~l~~l~~l~~l~----~- 157 (437)
++.|+......++++|+|++|.+.+ .++ ..|.++++|++|++++ |.+... +|..+ ..+..++.+. .
T Consensus 40 gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~-~~l~~l~~L~~L~L~~~n~l~~~-~p~~l----~~l~~L~~L~Ls~n~l 113 (313)
T 1ogq_A 40 GVLCDTDTQTYRVNNLDLSGLNLPKPYPIP-SSLANLPYLNFLYIGGINNLVGP-IPPAI----AKLTQLHYLYITHTNV 113 (313)
T ss_dssp TEEECCSSSCCCEEEEEEECCCCSSCEECC-GGGGGCTTCSEEEEEEETTEESC-CCGGG----GGCTTCSEEEEEEECC
T ss_pred ceEeCCCCCCceEEEEECCCCCccCCcccC-hhHhCCCCCCeeeCCCCCccccc-CChhH----hcCCCCCEEECcCCee
Confidence 7777654433578888888888876 566 5788888888888884 766431 23322 1111111111 1
Q ss_pred --CChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--c-CccEEEccCCcCCCCCCh
Q 013710 158 --LSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--S-NLTHVDFSGNQLKGKIPT 232 (437)
Q Consensus 158 --l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~-~L~~L~Ls~n~l~~~~~~ 232 (437)
.....+.++++|++|++++|.+... ++..+..+++|++|++++|++++.+|..+. . +|++|++++|.+++..|.
T Consensus 114 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~ 192 (313)
T 1ogq_A 114 SGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192 (313)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG
T ss_pred CCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh
Confidence 1112355566666666666665432 444566666666666666666655665554 2 666666666666656666
Q ss_pred hccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCC
Q 013710 233 SITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKL 312 (437)
Q Consensus 233 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L 312 (437)
.+..+. |++|++++|.+++..+..+..+++|++|++++|++++..+. +..+++|++|+|++|++++.+|..+..+++|
T Consensus 193 ~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 270 (313)
T 1ogq_A 193 TFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270 (313)
T ss_dssp GGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTC
T ss_pred HHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCC
Confidence 666655 66666666666655666666666666666666666644433 5556666666666666665666666666666
Q ss_pred CEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCcC
Q 013710 313 RYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYN 350 (437)
Q Consensus 313 ~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~ 350 (437)
++|++++|++++.+|.. ..+++|+.+++++|+++|+.
T Consensus 271 ~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 271 HSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp CEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred CEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence 66666666666666654 55666666666666666653
No 3
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=2.8e-31 Score=265.59 Aligned_cols=273 Identities=21% Similarity=0.174 Sum_probs=221.4
Q ss_pred CCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCEEEee
Q 013710 96 SHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTVT 175 (437)
Q Consensus 96 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L~ls 175 (437)
+++++|+|++|++... +...|.++++|++|+|++|+++.+ ....+.++++|++|+++
T Consensus 64 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~i----------------------~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 64 TNTRLLNLHENQIQII-KVNSFKHLRHLEILQLSRNHIRTI----------------------EIGAFNGLANLNTLELF 120 (440)
T ss_dssp TTCSEEECCSCCCCEE-CTTTTSSCSSCCEEECCSSCCCEE----------------------CGGGGTTCSSCCEEECC
T ss_pred CCCcEEEccCCcCCee-CHHHhhCCCCCCEEECCCCcCCcc----------------------ChhhccCCccCCEEECC
Confidence 5899999999998654 447899999999999999988643 23467789999999999
Q ss_pred cCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCC-cCCCCCChhccCCCCCcEEEccCCCCCC
Q 013710 176 NVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGN-QLKGKIPTSITLLENLQHLNLSSNGLNG 252 (437)
Q Consensus 176 ~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 252 (437)
+|.+... ....+..+++|++|++++|.+.+..+..+. ++|++|++++| .+....+..|.++++|++|++++|.++
T Consensus 121 ~n~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~- 198 (440)
T 3zyj_A 121 DNRLTTI-PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR- 198 (440)
T ss_dssp SSCCSSC-CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred CCcCCee-CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence 9999744 445688999999999999999966555555 89999999994 555455558999999999999999998
Q ss_pred CCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCccc
Q 013710 253 EIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASI 332 (437)
Q Consensus 253 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 332 (437)
.+| .+..+++|++|++++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..+..
T Consensus 199 ~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 199 EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 455 4889999999999999999888899999999999999999999888899999999999999999999887788889
Q ss_pred CCCCCEEEecCCCCCCcCc-ccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013710 333 LEKLQVFKVGGNTNLCYNH-TVLSSKLKLGIAPCDKHGLPISPPPAKDNSSDDSENDSSDDDD 394 (437)
Q Consensus 333 l~~L~~L~l~~N~~~c~~~-~~~~~~~~~~~~~c~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 394 (437)
+++|+.|++++|+|.|+|. .|+..|.+.....-......|..|+...+....+.......|.
T Consensus 278 l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~~C~ 340 (440)
T 3zyj_A 278 LHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCY 340 (440)
T ss_dssp CTTCCEEECCSSCEECSSTTHHHHHHHHTTSCSSCSCCCBEEESTTTTTCBCC----CCSCCC
T ss_pred ccCCCEEEcCCCCccCCCCchHHHHHHHhccccCCccccCCCChhHhcCccHhHhhhhhccCC
Confidence 9999999999999999998 4555554432222223345577777777666655555555553
No 4
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=4.9e-31 Score=264.74 Aligned_cols=267 Identities=18% Similarity=0.152 Sum_probs=215.0
Q ss_pred CCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCEEEee
Q 013710 96 SHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTVT 175 (437)
Q Consensus 96 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L~ls 175 (437)
+++++|+|++|++.+.. +..|.++++|++|+|++|+++.+ ....+.++++|++|+++
T Consensus 75 ~~l~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~----------------------~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQ-ADTFRHLHHLEVLQLGRNSIRQI----------------------EVGAFNGLASLNTLELF 131 (452)
T ss_dssp TTCSEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCEE----------------------CTTTTTTCTTCCEEECC
T ss_pred CCccEEECcCCcCceEC-HHHcCCCCCCCEEECCCCccCCc----------------------ChhhccCcccCCEEECC
Confidence 58999999999997544 47899999999999999988643 22357789999999999
Q ss_pred cCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccC-CcCCCCCChhccCCCCCcEEEccCCCCCC
Q 013710 176 NVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSG-NQLKGKIPTSITLLENLQHLNLSSNGLNG 252 (437)
Q Consensus 176 ~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 252 (437)
+|.+... .+..+.++++|++|+|++|.+.+..+..+. ++|++|++++ |.+....+..|.++++|++|++++|.+++
T Consensus 132 ~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 132 DNWLTVI-PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp SSCCSBC-CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred CCcCCcc-ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 9998744 445688899999999999999965555555 8999999999 55554555579999999999999999985
Q ss_pred CCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCccc
Q 013710 253 EIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASI 332 (437)
Q Consensus 253 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 332 (437)
++ .+..+++|++|++++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|++++..+..+..
T Consensus 211 -~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 211 -MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp -CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred -cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 44 5889999999999999999888999999999999999999999888899999999999999999999877788889
Q ss_pred CCCCCEEEecCCCCCCcCc-ccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013710 333 LEKLQVFKVGGNTNLCYNH-TVLSSKLKLGIAPCDKHGLPISPPPAKDNSSDDSEND 388 (437)
Q Consensus 333 l~~L~~L~l~~N~~~c~~~-~~~~~~~~~~~~~c~~~~~~~~~p~~~~~~~~~~~~~ 388 (437)
+++|+.|++++|+|.|+|. .|+..|.......-......|..|+...+....+...
T Consensus 289 l~~L~~L~L~~Np~~CdC~~~~l~~~l~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~ 345 (452)
T 3zyi_A 289 LRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQ 345 (452)
T ss_dssp CTTCCEEECCSSCEECSTTTHHHHHHHHHHC---CCSSCBEEESTTTTTCBTTSCCG
T ss_pred ccCCCEEEccCCCcCCCCCchHHHHHHHHhCccCCccCcEeCCchHhccchhhccch
Confidence 9999999999999999998 4444444322111112223455555555544444333
No 5
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.97 E-value=8.2e-31 Score=264.87 Aligned_cols=258 Identities=17% Similarity=0.186 Sum_probs=173.0
Q ss_pred CCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhcccccccc----ccCCCCChhhhcC
Q 013710 90 DSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCI----HSLHHLSGVFLSR 165 (437)
Q Consensus 90 ~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l----~~l~~l~~~~~~~ 165 (437)
+.++++++|++|+|++|.+. .++...|.++++|++|++++|+++.+ +......+.+++.+ +.+..+....+..
T Consensus 74 ~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 150 (477)
T 2id5_A 74 GAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVIL--LDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150 (477)
T ss_dssp TTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEECTTSCCCEE--CTTTTTTCTTCCEEEECCTTCCEECTTSSTT
T ss_pred hhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEECCCCccccC--ChhHccccccCCEEECCCCccceeChhhccC
Confidence 34444455555555555443 23323444555555555555544322 11111111111111 1111222334556
Q ss_pred CCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCcEE
Q 013710 166 FVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHL 243 (437)
Q Consensus 166 l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 243 (437)
+++|++|++++|.+... ....+.++++|++|++++|.+.+..+..+. ++|++|++++|.+.+.++..+....+|++|
T Consensus 151 l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 229 (477)
T 2id5_A 151 LNSLEQLTLEKCNLTSI-PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL 229 (477)
T ss_dssp CTTCCEEEEESCCCSSC-CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEE
T ss_pred CCCCCEEECCCCcCccc-ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEE
Confidence 66666666666666433 334466666666666666666654444444 667777777766555555555555578888
Q ss_pred EccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCC
Q 013710 244 NLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFH 323 (437)
Q Consensus 244 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 323 (437)
++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|+|++|++.+..+..|.++++|++|++++|+++
T Consensus 230 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 309 (477)
T 2id5_A 230 SITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT 309 (477)
T ss_dssp EEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCS
T ss_pred ECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCc
Confidence 88888888554467889999999999999999777788999999999999999999888999999999999999999999
Q ss_pred CCCCCCcccCCCCCEEEecCCCCCCcCc
Q 013710 324 GVLPFNASILEKLQVFKVGGNTNLCYNH 351 (437)
Q Consensus 324 ~~~~~~l~~l~~L~~L~l~~N~~~c~~~ 351 (437)
+..+..+..+++|+.|++++|++.|+|.
T Consensus 310 ~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 310 TLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp CCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred eeCHhHcCCCcccCEEEccCCCccCccc
Confidence 8777778889999999999999999998
No 6
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=3e-30 Score=269.10 Aligned_cols=151 Identities=18% Similarity=0.200 Sum_probs=122.2
Q ss_pred CCCCcEEEccCCCCC-CCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEE
Q 013710 237 LENLQHLNLSSNGLN-GEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYL 315 (437)
Q Consensus 237 l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L 315 (437)
+++|+.|++++|.+. +..|..|..+++|++|+|++|++++..|..|.++++|++|+|++|+|++..+..|.++++|++|
T Consensus 468 ~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 547 (635)
T 4g8a_A 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 547 (635)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEE
T ss_pred chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEE
Confidence 344555555555432 2355678888999999999999998888999999999999999999998888899999999999
Q ss_pred eccCCcCCCCCCCCcccC-CCCCEEEecCCCCCCcCc-cccccccccccc-CCCCCCCCCCCCCCCCCCCCCCCC
Q 013710 316 NLQNNNFHGVLPFNASIL-EKLQVFKVGGNTNLCYNH-TVLSSKLKLGIA-PCDKHGLPISPPPAKDNSSDDSEN 387 (437)
Q Consensus 316 ~L~~N~l~~~~~~~l~~l-~~L~~L~l~~N~~~c~~~-~~~~~~~~~~~~-~c~~~~~~~~~p~~~~~~~~~~~~ 387 (437)
+|++|++++..|..+..+ ++|+.|++++|||.|+|+ .|+..|.+.... .-+.....|..|+...+.+..+.+
T Consensus 548 ~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g~~l~~~~ 622 (635)
T 4g8a_A 548 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLN 622 (635)
T ss_dssp ECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTTCBGGGCC
T ss_pred ECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHHCCCEeeeec
Confidence 999999999999988887 689999999999999998 566666653221 223445778999999888776663
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.2e-30 Score=271.46 Aligned_cols=311 Identities=19% Similarity=0.165 Sum_probs=211.0
Q ss_pred hhhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccc
Q 013710 70 IRALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSF 149 (437)
Q Consensus 70 ~~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l 149 (437)
+++|+.|+++++... ...+.+.++++|++|++++|.+.+..+ ..+.++++|++|++++|.+.. .++......+.++
T Consensus 277 l~~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L 352 (606)
T 3t6q_A 277 FSGLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLSIKGNTKRL-ELGTGCLENLENL 352 (606)
T ss_dssp CTTCSEEECTTSCCS--CCCSSCCSCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEECCSCSSCC-BCCSSTTTTCTTC
T ss_pred ccCCCEEeccCCccC--CCChhhcccccCCEEECccCCcCcCch-hhhhccCcCCEEECCCCCccc-ccchhhhhccCcC
Confidence 344555555443221 112234455555666665555543222 455555566666666555431 1122211111222
Q ss_pred cccc----cCCCCC--hhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcc-cc--cCccEEE
Q 013710 150 SCIH----SLHHLS--GVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKH-LH--SNLTHVD 220 (437)
Q Consensus 150 ~~l~----~l~~l~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~--~~L~~L~ 220 (437)
+.+. .+..+. ...+..+++|++|++++|.+... .+..+..+++|++|++++|.+.+..+.. +. ++|++|+
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL-KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE-CTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC-CHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 2111 111111 22466777888888888877533 4456777888888888888887665544 33 7888999
Q ss_pred ccCCcCCCCCChhccCCCCCcEEEccCCCCCC---CCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCc
Q 013710 221 FSGNQLKGKIPTSITLLENLQHLNLSSNGLNG---EIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQ 297 (437)
Q Consensus 221 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~ 297 (437)
+++|.+.+..+..+..+++|++|++++|.+++ ..+..+..+++|++|++++|++++..+..+..+++|++|+|++|+
T Consensus 432 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp CTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence 99998887778888889999999999998875 233568888999999999999998788889999999999999999
Q ss_pred CCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCc-ccccccccccccC-CCCCCCCCCCC
Q 013710 298 LNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNH-TVLSSKLKLGIAP-CDKHGLPISPP 375 (437)
Q Consensus 298 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~-~~~~~~~~~~~~~-c~~~~~~~~~p 375 (437)
+++..+..+.++++| +|++++|++++..|..+..+++|+.+++++|++.|+|+ .++..|.+..... -......|..|
T Consensus 512 l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~~~~~~~~~C~~p 590 (606)
T 3t6q_A 512 LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENP 590 (606)
T ss_dssp CCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHHHCGGGEECGGGCBEEES
T ss_pred cCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHHhCcccccCCCCCeeCCc
Confidence 999899999999999 99999999998888888899999999999999999998 4445554432111 12334567777
Q ss_pred CCCCCCCCCCC
Q 013710 376 PAKDNSSDDSE 386 (437)
Q Consensus 376 ~~~~~~~~~~~ 386 (437)
+...+....+.
T Consensus 591 ~~~~g~~l~~~ 601 (606)
T 3t6q_A 591 PLLRGVRLSDV 601 (606)
T ss_dssp GGGTTCBGGGC
T ss_pred hHhCCCeeeee
Confidence 77666655444
No 8
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=5.7e-31 Score=250.50 Aligned_cols=266 Identities=16% Similarity=0.139 Sum_probs=219.2
Q ss_pred CCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCEEEee
Q 013710 96 SHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTVT 175 (437)
Q Consensus 96 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L~ls 175 (437)
++|++|+|++|.+. .++...|.++++|++|++++|+++.+. .....+..+++|++|+++
T Consensus 28 ~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~--------------------~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKG--------------------CCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEE--------------------EEEHHHHSCSCCCEEECC
T ss_pred CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCccc--------------------CcccccccccccCEEECC
Confidence 58999999999986 566567899999999999999886320 001234578999999999
Q ss_pred cCCCCCCchhHhhcCCcCccEEEeeCCcccccCC-cccc--cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCC
Q 013710 176 NVPVNASGLYVIIGNMHKLRSVTISNANVTGYIP-KHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNG 252 (437)
Q Consensus 176 ~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 252 (437)
+|.+.. ++..+..+++|++|++++|++++..+ ..+. ++|++|++++|.+.+..+..|..+++|++|++++|.+++
T Consensus 87 ~n~i~~--l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 87 FNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp SCSEEE--EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCcccc--ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 999853 55568899999999999999986554 3343 899999999999998888889999999999999999985
Q ss_pred -CCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcc
Q 013710 253 -EIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNAS 331 (437)
Q Consensus 253 -~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 331 (437)
..|..+..+++|++|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|++|++++|++++..+..+.
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 5788899999999999999999987788999999999999999999987777899999999999999999999998888
Q ss_pred cCC-CCCEEEecCCCCCCcCc-ccccccccc-cccCCCCCCCCCCCCCCCCCCCCC
Q 013710 332 ILE-KLQVFKVGGNTNLCYNH-TVLSSKLKL-GIAPCDKHGLPISPPPAKDNSSDD 384 (437)
Q Consensus 332 ~l~-~L~~L~l~~N~~~c~~~-~~~~~~~~~-~~~~c~~~~~~~~~p~~~~~~~~~ 384 (437)
.++ +|+.|++++|++.|+|. .++..|.+. ...........|..|+...+....
T Consensus 245 ~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~~~ 300 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVL 300 (306)
T ss_dssp CCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCBGG
T ss_pred hhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCceee
Confidence 884 99999999999999997 344444432 112223345567667666655443
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.97 E-value=2.4e-29 Score=252.40 Aligned_cols=278 Identities=18% Similarity=0.245 Sum_probs=216.8
Q ss_pred hhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhcccccc
Q 013710 71 RALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFS 150 (437)
Q Consensus 71 ~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~ 150 (437)
++|+.|+++++.. .++..+.++++++|++|+|++|.+.+.+++..|.++++|++|++++|+++.+ .|.. +..+.
T Consensus 30 ~~l~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~----~~~l~ 103 (455)
T 3v47_A 30 AHVNYVDLSLNSI-AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL-ETGA----FNGLA 103 (455)
T ss_dssp TTCCEEECCSSCC-CEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE-CTTT----TTTCT
T ss_pred CccCEEEecCCcc-CcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc-Chhh----ccCcc
Confidence 5688999987543 3555677888999999999999987777767899999999999999988643 1222 22233
Q ss_pred ccccCC----CCCh-----hhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--------
Q 013710 151 CIHSLH----HLSG-----VFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH-------- 213 (437)
Q Consensus 151 ~l~~l~----~l~~-----~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-------- 213 (437)
+++.+. .+.+ ..+..+++|++|++++|.+........+.++++|++|++++|.+.+..+..+.
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence 332222 3332 23778999999999999997653334488899999999999999876665432
Q ss_pred ----------------------------cCccEEEccCCcCCCCCChhcc------------------------------
Q 013710 214 ----------------------------SNLTHVDFSGNQLKGKIPTSIT------------------------------ 235 (437)
Q Consensus 214 ----------------------------~~L~~L~Ls~n~l~~~~~~~l~------------------------------ 235 (437)
++|++|++++|.+++..+..+.
T Consensus 184 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 263 (455)
T 3v47_A 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263 (455)
T ss_dssp EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCC
T ss_pred ccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhcc
Confidence 3577778877776543333221
Q ss_pred ---------CCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhh
Q 013710 236 ---------LLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFF 306 (437)
Q Consensus 236 ---------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l 306 (437)
..++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+.++++|++|+|++|++++..+..+
T Consensus 264 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 343 (455)
T 3v47_A 264 PDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMF 343 (455)
T ss_dssp CCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGG
T ss_pred CcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHh
Confidence 12578888888888888788889999999999999999998788889999999999999999998888899
Q ss_pred cCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCcccc
Q 013710 307 SDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNHTVL 354 (437)
Q Consensus 307 ~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~~~~ 354 (437)
.++++|++|++++|++++..|..+..+++|++|++++|+........+
T Consensus 344 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 391 (455)
T 3v47_A 344 ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391 (455)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHh
Confidence 999999999999999998888899999999999999998775544333
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=1.1e-29 Score=267.76 Aligned_cols=302 Identities=19% Similarity=0.143 Sum_probs=181.1
Q ss_pred CCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhcc--cccccc----ccCCCCChhhhc
Q 013710 91 SSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSL--LSFSCI----HSLHHLSGVFLS 164 (437)
Q Consensus 91 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l--~~l~~l----~~l~~l~~~~~~ 164 (437)
.++++++|++|++++|.+.+.. +..|.++++|++|++++|.++...++......+ ..+..+ +.+..+....+.
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~ 402 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIK-SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS 402 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCC-TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTT
T ss_pred hcccCCCCCEEECCCCccCCCC-hhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhh
Confidence 4556677777777777775543 356777778888887777643222222211100 011111 112223333455
Q ss_pred CCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccc--------------------------cCCcccc--cCc
Q 013710 165 RFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTG--------------------------YIPKHLH--SNL 216 (437)
Q Consensus 165 ~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~--------------------------~~~~~~~--~~L 216 (437)
.+++|++|++++|.+........+.++++|++|++++|++.+ ..|..+. ++|
T Consensus 403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L 482 (680)
T 1ziw_A 403 WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482 (680)
T ss_dssp TCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC
T ss_pred CCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC
Confidence 666677777776666432222345555666666666655443 2344443 678
Q ss_pred cEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCC--------CcccCCCcccceeecccccCCCCCccccCCCCCC
Q 013710 217 THVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEI--------PSSIGDLIALKNVSLASNSLSGSVPESMASLTDM 288 (437)
Q Consensus 217 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--------~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 288 (437)
++|++++|++++..+..|.++++|++|++++|.+++.. ...+.++++|++|++++|+++...+..|.++++|
T Consensus 483 ~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L 562 (680)
T 1ziw_A 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCc
Confidence 88888888887666667788888888888888776421 1236777888888888888885444568888999
Q ss_pred CeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcc-cCCCCCEEEecCCCCCCcCc--ccccccccccccCC
Q 013710 289 VHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNAS-ILEKLQVFKVGGNTNLCYNH--TVLSSKLKLGIAPC 365 (437)
Q Consensus 289 ~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~-~l~~L~~L~l~~N~~~c~~~--~~~~~~~~~~~~~c 365 (437)
++|+|++|++++..+..|.++++|++|++++|++++..+..+. .+++|+.+++++|+|.|+|+ .|+..|........
T Consensus 563 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~~~~~~~ 642 (680)
T 1ziw_A 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNI 642 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSSCC----
T ss_pred ceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHHhcCccc
Confidence 9999999999877777788899999999999999977666666 78999999999999999997 57777765432111
Q ss_pred -C-CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013710 366 -D-KHGLPISPPPAKDNSSDDSENDSSDDD 393 (437)
Q Consensus 366 -~-~~~~~~~~p~~~~~~~~~~~~~~~~~~ 393 (437)
. .....|..|+...+....+.+.....|
T Consensus 643 ~~~~~~~~C~~p~~~~g~~l~~~~~~~~~~ 672 (680)
T 1ziw_A 643 PELSSHYLCNTPPHYHGFPVRLFDTSSCKD 672 (680)
T ss_dssp ------------------------------
T ss_pred ccccCCcEECCchHHCCCcccccChhhcCC
Confidence 1 245678888888887776665555444
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=7.9e-30 Score=272.20 Aligned_cols=250 Identities=26% Similarity=0.344 Sum_probs=196.5
Q ss_pred CCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccc----cCCCCChhhhcCCCCCC
Q 013710 95 FSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIH----SLHHLSGVFLSRFVNLT 170 (437)
Q Consensus 95 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~----~l~~l~~~~~~~l~~L~ 170 (437)
+++|++|++++|.+.+.++ ..|.++++|++|++++|++++. +|..+. .+.+++.+. .+.......+..+++|+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~Ls~N~l~~~-~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 469 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIP-PTLSNCSELVSLHLSFNYLSGT-IPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469 (768)
T ss_dssp TCCCCEEECCSSEEEEECC-GGGGGCTTCCEEECCSSEEESC-CCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred cCCccEEECCCCccccccC-HHHhcCCCCCEEECcCCcccCc-ccHHHh-cCCCCCEEECCCCcccCcCCHHHcCCCCce
Confidence 5678888888888776666 6788888888888888887532 233321 122222221 12222233567888899
Q ss_pred EEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCcEEEccCC
Q 013710 171 DLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSN 248 (437)
Q Consensus 171 ~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 248 (437)
+|++++|.+... ++..+.++++|++|++++|++++.+|..+. ++|++|++++|++.+.+|..+..+++|++|++++|
T Consensus 470 ~L~L~~N~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 470 TLILDFNDLTGE-IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp EEECCSSCCCSC-CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred EEEecCCcccCc-CCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 999999988754 566788888999999999999888888776 88999999999998888888889999999999988
Q ss_pred CCCCCCCcc----------------------------------------------------------------------c
Q 013710 249 GLNGEIPSS----------------------------------------------------------------------I 258 (437)
Q Consensus 249 ~l~~~~~~~----------------------------------------------------------------------l 258 (437)
.+++.+|.. +
T Consensus 549 ~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~ 628 (768)
T 3rgz_A 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628 (768)
T ss_dssp EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence 887655543 3
Q ss_pred CCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCE
Q 013710 259 GDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQV 338 (437)
Q Consensus 259 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~ 338 (437)
+.+++|+.|++++|++++.+|..++++++|++|+|++|++++.+|..++++++|++|||++|+++|.+|..+..+++|++
T Consensus 629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 708 (768)
T 3rgz_A 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708 (768)
T ss_dssp SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence 33567888999999999899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCC
Q 013710 339 FKVGGNTNLC 348 (437)
Q Consensus 339 L~l~~N~~~c 348 (437)
|++++|+...
T Consensus 709 L~ls~N~l~g 718 (768)
T 3rgz_A 709 IDLSNNNLSG 718 (768)
T ss_dssp EECCSSEEEE
T ss_pred EECcCCcccc
Confidence 9999997543
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=3.8e-30 Score=274.68 Aligned_cols=276 Identities=29% Similarity=0.385 Sum_probs=212.7
Q ss_pred hhhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccc
Q 013710 70 IRALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSF 149 (437)
Q Consensus 70 ~~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l 149 (437)
+.+|+.|++.++... +...+.++++++|++|+|++|.+.+.++ ..|.++++|++|++++|+++.. +|..+. .+.++
T Consensus 393 ~~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~-~p~~~~-~l~~L 468 (768)
T 3rgz_A 393 KNTLQELYLQNNGFT-GKIPPTLSNCSELVSLHLSFNYLSGTIP-SSLGSLSKLRDLKLWLNMLEGE-IPQELM-YVKTL 468 (768)
T ss_dssp TCCCCEEECCSSEEE-EECCGGGGGCTTCCEEECCSSEEESCCC-GGGGGCTTCCEEECCSSCCCSC-CCGGGG-GCTTC
T ss_pred cCCccEEECCCCccc-cccCHHHhcCCCCCEEECcCCcccCccc-HHHhcCCCCCEEECCCCcccCc-CCHHHc-CCCCc
Confidence 345777776553221 3334455666777777777777766665 5677777777777777776532 233221 11122
Q ss_pred ccc----ccCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccC
Q 013710 150 SCI----HSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSG 223 (437)
Q Consensus 150 ~~l----~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~ 223 (437)
+.+ +.+.......+.++++|++|++++|.+... ++..++.+++|++|++++|++.+.+|..+. ++|++|++++
T Consensus 469 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE-IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred eEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCc-CChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence 211 112222234577888999999999988754 667788888999999999999888888877 8899999998
Q ss_pred CcCCCCCChh----------------------------------------------------------------------
Q 013710 224 NQLKGKIPTS---------------------------------------------------------------------- 233 (437)
Q Consensus 224 n~l~~~~~~~---------------------------------------------------------------------- 233 (437)
|.+.+.+|..
T Consensus 548 N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~ 627 (768)
T 3rgz_A 548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627 (768)
T ss_dssp SEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred CccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchh
Confidence 8887666643
Q ss_pred ccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCC
Q 013710 234 ITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLR 313 (437)
Q Consensus 234 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~ 313 (437)
+..+++|++|+|++|++++.+|..++.+++|+.|+|++|++++.+|..++++++|++|||++|++++.+|..+..+++|+
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 33457899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCc
Q 013710 314 YLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNH 351 (437)
Q Consensus 314 ~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~ 351 (437)
+|++++|+++|.+|.. +.+.++....+.||+++|+.+
T Consensus 708 ~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~ 744 (768)
T 3rgz_A 708 EIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYP 744 (768)
T ss_dssp EEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTT
T ss_pred EEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCCC
Confidence 9999999999999975 456667777889999999753
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=4e-29 Score=269.37 Aligned_cols=300 Identities=16% Similarity=0.138 Sum_probs=209.2
Q ss_pred hhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhcccccc
Q 013710 71 RALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFS 150 (437)
Q Consensus 71 ~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~ 150 (437)
.+|+.|+++++.. ..+....++++++|++|+|++|.+.+..+ ..|.++++|++|++++|+++.+ +......+.++.
T Consensus 266 ~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~ 341 (844)
T 3j0a_A 266 SSVRHLDLSHGFV-FSLNSRVFETLKDLKVLNLAYNKINKIAD-EAFYGLDNLQVLNLSYNLLGEL--YSSNFYGLPKVA 341 (844)
T ss_dssp SCCCEEECTTCCC-CEECSCCSSSCCCCCEEEEESCCCCEECT-TTTTTCSSCCEEEEESCCCSCC--CSCSCSSCTTCC
T ss_pred CCccEEECCCCcc-cccChhhhhcCCCCCEEECCCCcCCCCCh-HHhcCCCCCCEEECCCCCCCcc--CHHHhcCCCCCC
Confidence 4577788776442 34555677888899999999998865544 6888999999999999988654 221111222222
Q ss_pred cc----ccCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcc---------------
Q 013710 151 CI----HSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKH--------------- 211 (437)
Q Consensus 151 ~l----~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--------------- 211 (437)
.+ +.+..+....+..+++|++|++++|.+... ..+++|+.|++++|+++ .+|..
T Consensus 342 ~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i------~~~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~ 414 (844)
T 3j0a_A 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI------HFIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLE 414 (844)
T ss_dssp EEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC------SSCCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCC
T ss_pred EEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc------cCCCCcchhccCCCCcc-cccccccccceeecccCccc
Confidence 22 233445555677888888888888887532 22556666666666655 22221
Q ss_pred -------c--ccCccEEEccCCcCCCCCCh-hccCCCCCcEEEccCCCCC-----CCCCcccCCCcccceeecccccCCC
Q 013710 212 -------L--HSNLTHVDFSGNQLKGKIPT-SITLLENLQHLNLSSNGLN-----GEIPSSIGDLIALKNVSLASNSLSG 276 (437)
Q Consensus 212 -------~--~~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~ 276 (437)
+ .++|++|++++|++++..+. .+..+++|++|++++|.++ +..+..|.++++|+.|+|++|++++
T Consensus 415 ~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 494 (844)
T 3j0a_A 415 NLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS 494 (844)
T ss_dssp SSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTT
T ss_pred cCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccc
Confidence 1 16777788888877744332 3556778888888888876 3444568888999999999999998
Q ss_pred CCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCc-cccc
Q 013710 277 SVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNH-TVLS 355 (437)
Q Consensus 277 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~-~~~~ 355 (437)
..+..+.++++|++|+|++|++++..+..+. ++|+.|++++|++++..|..+ .+|+.+++++|++.|+|+ .++.
T Consensus 495 ~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~~f~ 569 (844)
T 3j0a_A 495 LPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELSTFI 569 (844)
T ss_dssp CCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCCSHH
T ss_pred cChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccccHHHH
Confidence 8888899999999999999999977666555 789999999999998888654 588999999999999998 4455
Q ss_pred cccccc-ccCCC-CCCCCCCCCCCCCCCCCCCC
Q 013710 356 SKLKLG-IAPCD-KHGLPISPPPAKDNSSDDSE 386 (437)
Q Consensus 356 ~~~~~~-~~~c~-~~~~~~~~p~~~~~~~~~~~ 386 (437)
.|.... ...+. .....|..|+...+....+.
T Consensus 570 ~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~ 602 (844)
T 3j0a_A 570 NWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSL 602 (844)
T ss_dssp HHHHHTTTTTCCCGGGCCCSSCSSSCSCCTTTC
T ss_pred HHHHhcCcccccccccCccCCchhhCCCccccC
Confidence 554321 12222 23456777777666655443
No 14
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=9.6e-29 Score=249.71 Aligned_cols=278 Identities=18% Similarity=0.194 Sum_probs=223.4
Q ss_pred hhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhcccccc
Q 013710 71 RALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFS 150 (437)
Q Consensus 71 ~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~ 150 (437)
..++.|+++++.. ..+..+.+.++++|++|+|++|.+.+..+ ..|.++++|++|+|++|+++.+ |......+.+++
T Consensus 32 ~~l~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~ 107 (477)
T 2id5_A 32 TETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIVSAVEP-GAFNNLFNLRTLGLRSNRLKLI--PLGVFTGLSNLT 107 (477)
T ss_dssp TTCSEEECCSSCC-CEECTTTTTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCCSC--CTTSSTTCTTCC
T ss_pred CCCcEEECCCCcc-ceECHhHccCCCCCCEEECCCCccCEeCh-hhhhCCccCCEEECCCCcCCcc--CcccccCCCCCC
Confidence 3688899988543 35556788899999999999999875544 7899999999999999999865 544333333333
Q ss_pred cc----ccCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCC
Q 013710 151 CI----HSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGN 224 (437)
Q Consensus 151 ~l----~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n 224 (437)
.+ +.+..+....+.++++|++|++++|.+... .+..+.++++|++|++++|++++..+..+. ++|+.|++++|
T Consensus 108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI-SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE-CTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred EEECCCCccccCChhHccccccCCEEECCCCcccee-ChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence 33 123334445678889999999999988644 345688889999999999998865444444 88999999999
Q ss_pred cCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchh
Q 013710 225 QLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPR 304 (437)
Q Consensus 225 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~ 304 (437)
.+.+..+..|..+++|++|++++|...+.++.......+|++|++++|++++..+..+..+++|++|+|++|.+++..+.
T Consensus 187 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 266 (477)
T 2id5_A 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266 (477)
T ss_dssp CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTT
T ss_pred cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChh
Confidence 99877777888999999999999887767776666667999999999999965556789999999999999999988888
Q ss_pred hhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCccc
Q 013710 305 FFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNHTV 353 (437)
Q Consensus 305 ~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~~~ 353 (437)
.|.++++|++|++++|++++..+..+..+++|+.|++++|.........
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 315 (477)
T 2id5_A 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESV 315 (477)
T ss_dssp SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGG
T ss_pred hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhH
Confidence 8999999999999999999988999999999999999999876544433
No 15
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=2e-28 Score=235.41 Aligned_cols=246 Identities=18% Similarity=0.220 Sum_probs=162.2
Q ss_pred hhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhcccccc
Q 013710 71 RALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFS 150 (437)
Q Consensus 71 ~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~ 150 (437)
+.|+.|+++++.. ..+..+.++++++|++|+|++|.+.+..+ ..|.++++|++|++++|+++.+ |..+
T Consensus 52 ~~l~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~l--~~~~-------- 119 (330)
T 1xku_A 52 PDTALLDLQNNKI-TEIKDGDFKNLKNLHTLILINNKISKISP-GAFAPLVKLERLYLSKNQLKEL--PEKM-------- 119 (330)
T ss_dssp TTCCEEECCSSCC-CCBCTTTTTTCTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEECCSSCCSBC--CSSC--------
T ss_pred CCCeEEECCCCcC-CEeChhhhccCCCCCEEECCCCcCCeeCH-HHhcCCCCCCEEECCCCcCCcc--Chhh--------
Confidence 4577788877442 24445567788889999998888865444 6788888999999988887643 4322
Q ss_pred ccccCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccc--cCCcccc--cCccEEEccCCcC
Q 013710 151 CIHSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTG--YIPKHLH--SNLTHVDFSGNQL 226 (437)
Q Consensus 151 ~l~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~--~~L~~L~Ls~n~l 226 (437)
.++|++|++++|.+... .+..+.++++|++|++++|.+.. ..+..+. ++|++|++++|.+
T Consensus 120 ---------------~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 120 ---------------PKTLQELRVHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp ---------------CTTCCEEECCSSCCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred ---------------cccccEEECCCCccccc-CHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 15677777777766533 34456667777777777776643 3344443 6677777777776
Q ss_pred CCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhh
Q 013710 227 KGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFF 306 (437)
Q Consensus 227 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l 306 (437)
+. +|..+. ++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+|++|+++ .+|..+
T Consensus 184 ~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 259 (330)
T 1xku_A 184 TT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259 (330)
T ss_dssp CS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred cc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh
Confidence 63 333332 56777777777776655666777777777777777776555556666677777777777776 555666
Q ss_pred cCCCCCCEEeccCCcCCCCCCCCccc------CCCCCEEEecCCCCCC
Q 013710 307 SDLKKLRYLNLQNNNFHGVLPFNASI------LEKLQVFKVGGNTNLC 348 (437)
Q Consensus 307 ~~l~~L~~L~L~~N~l~~~~~~~l~~------l~~L~~L~l~~N~~~c 348 (437)
..+++|++|++++|++++..+..+.. ...++.+++++|++.+
T Consensus 260 ~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 66777777777777777554444432 2556677777777654
No 16
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.1e-29 Score=246.65 Aligned_cols=264 Identities=16% Similarity=0.214 Sum_probs=208.5
Q ss_pred hhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhcccccc
Q 013710 71 RALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFS 150 (437)
Q Consensus 71 ~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~ 150 (437)
++|+.|+++++.. ..+..+.++++++|++|+|++|.+.+.. +..|.++++|++|++++|+++.+
T Consensus 52 ~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~-------------- 115 (353)
T 2z80_A 52 EAVKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNGINTIE-EDSFSSLGSLEHLDLSYNYLSNL-------------- 115 (353)
T ss_dssp TTCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCSSC--------------
T ss_pred ccCcEEECCCCcC-cccCHHHhccCCCCCEEECCCCccCccC-HhhcCCCCCCCEEECCCCcCCcC--------------
Confidence 4688999887543 2455557888999999999999986543 36899999999999999988643
Q ss_pred ccccCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCc-ccccCCcccc--cCccEEEccCCcCC
Q 013710 151 CIHSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNAN-VTGYIPKHLH--SNLTHVDFSGNQLK 227 (437)
Q Consensus 151 ~l~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~--~~L~~L~Ls~n~l~ 227 (437)
....+.++++|++|++++|.+........+.++++|++|++++|. +.+..+..+. ++|++|++++|.++
T Consensus 116 --------~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 116 --------SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp --------CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred --------CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 334577899999999999998743221368889999999999984 6655555555 89999999999999
Q ss_pred CCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCcccc---CCCCCCCeeeccCCcCCC----
Q 013710 228 GKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESM---ASLTDMVHLDLSSNQLNG---- 300 (437)
Q Consensus 228 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~N~l~~---- 300 (437)
+..+..+..+++|++|++++|.+.......+..+++|++|++++|++++..+..+ .....++.++|+++.+.+
T Consensus 188 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~ 267 (353)
T 2z80_A 188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267 (353)
T ss_dssp EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH
T ss_pred ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchh
Confidence 8888899999999999999999874333334568899999999999986544433 345778899999998875
Q ss_pred cchhhhcCCCCCCEEeccCCcCCCCCCCC-cccCCCCCEEEecCCCCCCcCc--cccccccc
Q 013710 301 TIPRFFSDLKKLRYLNLQNNNFHGVLPFN-ASILEKLQVFKVGGNTNLCYNH--TVLSSKLK 359 (437)
Q Consensus 301 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~-l~~l~~L~~L~l~~N~~~c~~~--~~~~~~~~ 359 (437)
.+|..+..+++|++|++++|+++. +|.. +..+++|++|++++|++.|+|+ .++..|..
T Consensus 268 ~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~ 328 (353)
T 2z80_A 268 QVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 328 (353)
T ss_dssp HHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHH
T ss_pred hhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHH
Confidence 467788999999999999999994 5544 5889999999999999999996 34444443
No 17
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=9.7e-30 Score=264.55 Aligned_cols=302 Identities=13% Similarity=0.103 Sum_probs=229.7
Q ss_pred hhhhhhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCC-CCCCCCchhhhc
Q 013710 67 PKQIRALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPI-APIHFPNDLSLS 145 (437)
Q Consensus 67 ~~~~~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~i~lp~~l~~~ 145 (437)
...+.+|+.|++.++..- .+ ..+..+++|++|++++|.+ +.++ .+ .+++|++|++++|+. ..+ .
T Consensus 281 ~~~l~~L~~L~l~~~~~~-~l--~~l~~~~~L~~L~l~~n~l-~~lp--~~-~l~~L~~L~l~~n~~~~~~--------~ 345 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVSIK-YL--EDVPKHFKWQSLSIIRCQL-KQFP--TL-DLPFLKSLTLTMNKGSISF--------K 345 (606)
T ss_dssp CGGGTTCSEEEEESCCCC-CC--CCCCTTCCCSEEEEESCCC-SSCC--CC-CCSSCCEEEEESCSSCEEC--------C
T ss_pred cccCCCCCEEEecCccch-hh--hhccccccCCEEEcccccC-cccc--cC-CCCccceeeccCCcCccch--------h
Confidence 355677888888775432 22 2677788999999999998 6676 45 889999999999853 211 1
Q ss_pred cccccccccCC-------CCC--hhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCC-cccc--
Q 013710 146 LLSFSCIHSLH-------HLS--GVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIP-KHLH-- 213 (437)
Q Consensus 146 l~~l~~l~~l~-------~l~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~-- 213 (437)
...+..+..+. .+. ...+..+++|++|++++|.+.. ++..+..+++|++|++++|.+.+..+ ..+.
T Consensus 346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 423 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII--MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423 (606)
T ss_dssp CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE--ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC
T ss_pred hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc--chhhccCCCCCCeeECCCCccCCccChhhhhcc
Confidence 11222222211 111 3457789999999999999754 44678899999999999999997776 3444
Q ss_pred cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCC-CCCcccCCCcccceeecccccCCCCCccccCCCCCCCeee
Q 013710 214 SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNG-EIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLD 292 (437)
Q Consensus 214 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 292 (437)
++|++|++++|.+.+..+..+.++++|++|++++|.+++ ..|..+..+++|++|++++|++++..+..+.++++|++|+
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 503 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503 (606)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence 899999999999998889999999999999999999986 3788899999999999999999988888999999999999
Q ss_pred ccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCC-CCCEEEecCCCCCCcCc-ccccccccccccC-CCCCC
Q 013710 293 LSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILE-KLQVFKVGGNTNLCYNH-TVLSSKLKLGIAP-CDKHG 369 (437)
Q Consensus 293 L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~-~L~~L~l~~N~~~c~~~-~~~~~~~~~~~~~-c~~~~ 369 (437)
|++|++++..|..+.++++|++|++++|+++ .+|..+..++ +|+.+++++|++.|+|+ .|+..|....... -....
T Consensus 504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~~~~~~~~~~~ 582 (606)
T 3vq2_A 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQ 582 (606)
T ss_dssp CCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTTSSSSBSSGGG
T ss_pred CCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHHcCcccccCCcc
Confidence 9999999988999999999999999999999 5676688887 59999999999999998 4555665432211 12345
Q ss_pred CCCCCCCCCCCCCCCCC
Q 013710 370 LPISPPPAKDNSSDDSE 386 (437)
Q Consensus 370 ~~~~~p~~~~~~~~~~~ 386 (437)
..|..|+...+....+.
T Consensus 583 ~~C~~p~~~~~~~l~~~ 599 (606)
T 3vq2_A 583 MTCATPVEMNTSLVLDF 599 (606)
T ss_dssp CCCC-------------
T ss_pred ceeCCChHhCCCEeeec
Confidence 67777777766665544
No 18
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=2.7e-28 Score=240.04 Aligned_cols=269 Identities=14% Similarity=0.182 Sum_probs=200.4
Q ss_pred hhhhhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccc
Q 013710 68 KQIRALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLL 147 (437)
Q Consensus 68 ~~~~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~ 147 (437)
..+++|+.|+++++.. ..+....++++++|++|+|++|.+.+. ++..|.++++|++|++++|+++.+ |..+...+.
T Consensus 66 ~~l~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l--~~~~~~~l~ 141 (390)
T 3o6n_A 66 DSFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSL--PRGIFHNTP 141 (390)
T ss_dssp HHCCCCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTCT
T ss_pred cccccCcEEECCCCcc-cccChhhccCCCCcCEEECCCCCCCcC-CHHHhcCCCCCCEEECCCCccCcC--CHHHhcCCC
Confidence 3456777777766432 244455777888888889888888644 346788888889999888888754 554433333
Q ss_pred ccccc----ccCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCc-------------------cEEEeeCCcc
Q 013710 148 SFSCI----HSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKL-------------------RSVTISNANV 204 (437)
Q Consensus 148 ~l~~l----~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L-------------------~~L~L~~n~l 204 (437)
+++.+ +.+..+....+..+++|++|++++|.+.... +..+++| ++|++++|.+
T Consensus 142 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l 217 (390)
T 3o6n_A 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI 217 (390)
T ss_dssp TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC----GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCC
T ss_pred CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc----cccccccceeecccccccccCCCCcceEEECCCCee
Confidence 33333 2333455556777888888888888876442 2333444 4444444444
Q ss_pred cccCCcccccCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCC
Q 013710 205 TGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMAS 284 (437)
Q Consensus 205 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 284 (437)
.. ++....++|++|++++|.+++. ..+..+++|++|++++|.+++..+..|..+++|++|++++|+++ .++..+..
T Consensus 218 ~~-~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~ 293 (390)
T 3o6n_A 218 NV-VRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQP 293 (390)
T ss_dssp CE-EECCCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSC
T ss_pred ee-ccccccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCC
Confidence 42 2333336788999999988854 57889999999999999999888889999999999999999998 45667788
Q ss_pred CCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCcc
Q 013710 285 LTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNHT 352 (437)
Q Consensus 285 l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~~ 352 (437)
+++|++|+|++|++. .+|..+..+++|++|++++|++++. + +..+++|+.|++++|++.|+|..
T Consensus 294 l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~ 357 (390)
T 3o6n_A 294 IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR 357 (390)
T ss_dssp CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH
T ss_pred CCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH
Confidence 999999999999998 5566788899999999999999854 3 67789999999999999998863
No 19
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2.2e-28 Score=235.43 Aligned_cols=246 Identities=20% Similarity=0.252 Sum_probs=179.4
Q ss_pred hhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhcccccc
Q 013710 71 RALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFS 150 (437)
Q Consensus 71 ~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~ 150 (437)
++|+.|+++++.. ..+..+.++++++|++|+|++|.+.+.. +..|.++++|++|++++|+++.+ |..+
T Consensus 54 ~~l~~L~l~~n~i-~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~l--~~~~-------- 121 (332)
T 2ft3_A 54 PDTTLLDLQNNDI-SELRKDDFKGLQHLYALVLVNNKISKIH-EKAFSPLRKLQKLYISKNHLVEI--PPNL-------- 121 (332)
T ss_dssp TTCCEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCEEC-GGGSTTCTTCCEEECCSSCCCSC--CSSC--------
T ss_pred CCCeEEECCCCcC-CccCHhHhhCCCCCcEEECCCCccCccC-HhHhhCcCCCCEEECCCCcCCcc--Cccc--------
Confidence 4678888877442 2444567788888999999988886443 36888889999999998887643 3321
Q ss_pred ccccCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccc--cCCcccc-cCccEEEccCCcCC
Q 013710 151 CIHSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTG--YIPKHLH-SNLTHVDFSGNQLK 227 (437)
Q Consensus 151 ~l~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~-~~L~~L~Ls~n~l~ 227 (437)
.++|++|++++|.+... ....+.++++|++|++++|.++. ..+..+. .+|++|++++|+++
T Consensus 122 ---------------~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 122 ---------------PSSLVELRIHDNRIRKV-PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT 185 (332)
T ss_dssp ---------------CTTCCEEECCSSCCCCC-CSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCS
T ss_pred ---------------cccCCEEECCCCccCcc-CHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCC
Confidence 16788888888887643 33457778888888888888753 3344443 47888888888887
Q ss_pred CCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhc
Q 013710 228 GKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFS 307 (437)
Q Consensus 228 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 307 (437)
+ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+|++|+++ .+|..+.
T Consensus 186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 261 (332)
T 2ft3_A 186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261 (332)
T ss_dssp S-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred c-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence 4 444433 67888888888888766677888888888888888888666667778888888888888887 6666777
Q ss_pred CCCCCCEEeccCCcCCCCCCCCccc------CCCCCEEEecCCCCCC
Q 013710 308 DLKKLRYLNLQNNNFHGVLPFNASI------LEKLQVFKVGGNTNLC 348 (437)
Q Consensus 308 ~l~~L~~L~L~~N~l~~~~~~~l~~------l~~L~~L~l~~N~~~c 348 (437)
.+++|++|++++|++++..+..+.. ..+|+.+++++|++.+
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccc
Confidence 8888888888888888665555543 3567788888888764
No 20
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=6.4e-29 Score=233.94 Aligned_cols=258 Identities=19% Similarity=0.181 Sum_probs=200.9
Q ss_pred eEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCEEEeecCC
Q 013710 99 LSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTVTNVP 178 (437)
Q Consensus 99 ~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L~ls~n~ 178 (437)
++++.+++.+. .+| . .-.++|++|++++|+++.+ ....+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~-~ip-~--~~~~~l~~L~l~~n~i~~~----------------------~~~~~~~~~~L~~L~l~~n~ 67 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVP-V--GIPAASQRIFLHGNRISHV----------------------PAASFRACRNLTILWLHSNV 67 (285)
T ss_dssp CEEECCSSCCS-SCC-T--TCCTTCSEEECTTSCCCEE----------------------CTTTTTTCTTCCEEECCSSC
T ss_pred eEEEcCcCCcc-cCC-c--CCCCCceEEEeeCCcCCcc----------------------CHHHcccCCCCCEEECCCCc
Confidence 66777777764 444 2 2246788888888877543 22345677888888888887
Q ss_pred CCCCchhHhhcCCcCccEEEeeCCc-ccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCC
Q 013710 179 VNASGLYVIIGNMHKLRSVTISNAN-VTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIP 255 (437)
Q Consensus 179 l~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 255 (437)
+... .+..+.++++|++|++++|. +.+..+..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..+
T Consensus 68 l~~~-~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 68 LARI-DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp CCEE-CTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ccee-CHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH
Confidence 7543 34568888899999999997 7655566665 889999999999998778889999999999999999997777
Q ss_pred cccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCC
Q 013710 256 SSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEK 335 (437)
Q Consensus 256 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~ 335 (437)
..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++
T Consensus 147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 226 (285)
T 1ozn_A 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcc
Confidence 77899999999999999999666667899999999999999999888999999999999999999999776677889999
Q ss_pred CCEEEecCCCCCCcCcc-cccccccccccCCCCCCCCCCCCCCCCCCCCCC
Q 013710 336 LQVFKVGGNTNLCYNHT-VLSSKLKLGIAPCDKHGLPISPPPAKDNSSDDS 385 (437)
Q Consensus 336 L~~L~l~~N~~~c~~~~-~~~~~~~~~~~~c~~~~~~~~~p~~~~~~~~~~ 385 (437)
|+.|++++|++.|+|.. ++..|.... .-......|..|+...+....+
T Consensus 227 L~~L~l~~N~~~c~~~~~~~~~~l~~~--~~~~~~~~c~~p~~l~g~~l~~ 275 (285)
T 1ozn_A 227 LQYLRLNDNPWVCDCRARPLWAWLQKF--RGSSSEVPCSLPQRLAGRDLKR 275 (285)
T ss_dssp CCEEECCSSCEECSGGGHHHHHHHHHC--CSEECCCBEEESGGGTTCBGGG
T ss_pred cCEEeccCCCccCCCCcHHHHHHHHhc--ccccCccccCCchHhCCcChhh
Confidence 99999999999999983 333333221 1123345566666655554433
No 21
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=2.4e-28 Score=234.74 Aligned_cols=223 Identities=21% Similarity=0.270 Sum_probs=201.9
Q ss_pred CCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCEEEe
Q 013710 95 FSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTV 174 (437)
Q Consensus 95 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L~l 174 (437)
..++++|+|++|.+. .++ ..+.++++|++|++++|.++.+ |. .+.++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp-~~l~~l~~L~~L~L~~n~l~~l--p~---------------------~~~~l~~L~~L~L 134 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFP-DQAFRLSHLQHMTIDAAGLMEL--PD---------------------TMQQFAGLETLTL 134 (328)
T ss_dssp STTCCEEEEESSCCS-SCC-SCGGGGTTCSEEEEESSCCCCC--CS---------------------CGGGGTTCSEEEE
T ss_pred ccceeEEEccCCCch-hcC-hhhhhCCCCCEEECCCCCccch--hH---------------------HHhccCCCCEEEC
Confidence 468999999999986 666 5688899999999999998743 43 3468899999999
Q ss_pred ecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCccc-----------ccCccEEEccCCcCCCCCChhccCCCCCcEE
Q 013710 175 TNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHL-----------HSNLTHVDFSGNQLKGKIPTSITLLENLQHL 243 (437)
Q Consensus 175 s~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-----------~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 243 (437)
++|.+. .++..+.++++|++|++++|++.+.+|..+ .++|++|++++|+++ .+|..+..+++|++|
T Consensus 135 s~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L 211 (328)
T 4fcg_A 135 ARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSL 211 (328)
T ss_dssp ESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEE
T ss_pred CCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEE
Confidence 999997 467789999999999999998888888765 379999999999999 788889999999999
Q ss_pred EccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCC
Q 013710 244 NLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFH 323 (437)
Q Consensus 244 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 323 (437)
++++|.++ .++..+..+++|++|++++|.+.+.+|..+..+++|++|+|++|.+.+.+|..+.++++|++|++++|++.
T Consensus 212 ~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 212 KIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp EEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred EccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence 99999999 56678999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccCCCCCEEEecCCCC
Q 013710 324 GVLPFNASILEKLQVFKVGGNTN 346 (437)
Q Consensus 324 ~~~~~~l~~l~~L~~L~l~~N~~ 346 (437)
+.+|..+..+++|+.+++..|..
T Consensus 291 ~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 291 SRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CCCCGGGGGSCTTCEEECCGGGS
T ss_pred hhccHHHhhccCceEEeCCHHHH
Confidence 99999999999999999987754
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.6e-28 Score=249.16 Aligned_cols=167 Identities=24% Similarity=0.262 Sum_probs=105.3
Q ss_pred CCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCC--CCChhccCCCCCcEEEccCCCCCCCCCc-ccCCCccc
Q 013710 190 NMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKG--KIPTSITLLENLQHLNLSSNGLNGEIPS-SIGDLIAL 264 (437)
Q Consensus 190 ~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L 264 (437)
.+++|++|++++|++++..+..+. ++|++|++++|++++ .++..+..+++|++|++++|.+++.+|. .+..+++|
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 344455555555555444444433 455555555555543 2233455555555555555555542333 24555555
Q ss_pred ceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCC
Q 013710 265 KNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGN 344 (437)
Q Consensus 265 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N 344 (437)
++|++++|++++..+..+. ++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCC
Confidence 5556655555544444333 67888888888887 56666778999999999999999543334888999999999999
Q ss_pred CCCCcCc-ccc-ccccc
Q 013710 345 TNLCYNH-TVL-SSKLK 359 (437)
Q Consensus 345 ~~~c~~~-~~~-~~~~~ 359 (437)
++.|+|+ .|+ ..|..
T Consensus 479 ~~~c~c~~~~~~~~~~~ 495 (520)
T 2z7x_B 479 PWDCSCPRIDYLSRWLN 495 (520)
T ss_dssp CBCCCHHHHHHHHHHHH
T ss_pred CCcccCCchHHHHHHHH
Confidence 9999998 455 55544
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=3.1e-27 Score=243.56 Aligned_cols=157 Identities=22% Similarity=0.257 Sum_probs=96.2
Q ss_pred CcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCC--ChhccCCCCCcEEEccCCCCCCCCCc-ccCCCcccc
Q 013710 191 MHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKI--PTSITLLENLQHLNLSSNGLNGEIPS-SIGDLIALK 265 (437)
Q Consensus 191 l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~--~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~ 265 (437)
+++|++|++++|++++..+..+. ++|++|++++|++++.. +..+.++++|++|++++|.+++.+|. .+..+++|+
T Consensus 352 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~ 431 (562)
T 3a79_B 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESIL 431 (562)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCC
T ss_pred CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCC
Confidence 34444444444444443333333 44444444444444311 23344445555555555555432222 244455555
Q ss_pred eeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCC-cccCCCCCEEEecCC
Q 013710 266 NVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFN-ASILEKLQVFKVGGN 344 (437)
Q Consensus 266 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~-l~~l~~L~~L~l~~N 344 (437)
+|++++|++++..+..+. ++|++|+|++|+++ .+|..+..+++|++|++++|++++ +|.. +..+++|+.|++++|
T Consensus 432 ~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 432 VLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp EEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSC
T ss_pred EEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCC
Confidence 555555555443333332 57888888888887 556666689999999999999995 5544 889999999999999
Q ss_pred CCCCcCc
Q 013710 345 TNLCYNH 351 (437)
Q Consensus 345 ~~~c~~~ 351 (437)
++.|+|+
T Consensus 508 ~~~c~c~ 514 (562)
T 3a79_B 508 PWDCTCP 514 (562)
T ss_dssp CBCCCHH
T ss_pred CcCCCcc
Confidence 9999998
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=6.2e-28 Score=248.92 Aligned_cols=185 Identities=23% Similarity=0.254 Sum_probs=152.0
Q ss_pred CCCCCEEEeecCCCCCCc-hhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCC-hhccCCCCCc
Q 013710 166 FVNLTDLTVTNVPVNASG-LYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIP-TSITLLENLQ 241 (437)
Q Consensus 166 l~~L~~L~ls~n~l~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~ 241 (437)
+++|++|++++|.+.... .+..+.++++|++|++++|.+.+..+. +. ++|++|++++|.+.+..+ ..+..+++|+
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 424 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCC
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCC
Confidence 344555555555443221 134566667777777777777643333 43 788999999998886655 5788999999
Q ss_pred EEEccCCCCCCCCCcccCCCcccceeecccccCC-CCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCC
Q 013710 242 HLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLS-GSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNN 320 (437)
Q Consensus 242 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N 320 (437)
+|++++|.+.+..+..+.++++|++|++++|.+. +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|
T Consensus 425 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 9999999998888888999999999999999997 468888999999999999999999888999999999999999999
Q ss_pred cCCCCCCCCcccCCCCCEEEecCCCCCCcCc
Q 013710 321 NFHGVLPFNASILEKLQVFKVGGNTNLCYNH 351 (437)
Q Consensus 321 ~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~ 351 (437)
++++..+..+..+++|+.|++++|++.|+|+
T Consensus 505 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 505 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 9998888888999999999999999999998
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=3.5e-27 Score=244.80 Aligned_cols=268 Identities=15% Similarity=0.173 Sum_probs=196.2
Q ss_pred hhhhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhcccc
Q 013710 69 QIRALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLS 148 (437)
Q Consensus 69 ~~~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~ 148 (437)
.+++|+.|+++++.. .++....++++++|++|+|++|.+.+. ++..|+++++|++|+|++|.++.+ |..+...+.+
T Consensus 73 ~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l--~~~~~~~l~~ 148 (597)
T 3oja_B 73 SFRQVELLNLNDLQI-EEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERNDLSSL--PRGIFHNTPK 148 (597)
T ss_dssp HCCCCSEEECTTSCC-CEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTCTT
T ss_pred cCCCCcEEECCCCCC-CCCChHHhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCCCEEEeeCCCCCCC--CHHHhccCCC
Confidence 355677777766432 244555777788888888888887654 446778888888888888888754 5544333333
Q ss_pred cccc----ccCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccc------------------
Q 013710 149 FSCI----HSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTG------------------ 206 (437)
Q Consensus 149 l~~l----~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~------------------ 206 (437)
+..+ +.+..+....+..+++|++|++++|.+.... +..+++|++|++++|.+.+
T Consensus 149 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~ 224 (597)
T 3oja_B 149 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN 224 (597)
T ss_dssp CCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCC
T ss_pred CCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----hhhhhhhhhhhcccCccccccCCchhheeeccCCccc
Confidence 3332 2333444445677777777777777775432 2333444444444443332
Q ss_pred cCCcccccCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCC
Q 013710 207 YIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLT 286 (437)
Q Consensus 207 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 286 (437)
.++..+..+|+.|++++|.+++ +..+..+++|++|+|++|.+++..|..|..+++|+.|+|++|.+++ ++..+..++
T Consensus 225 ~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~ 301 (597)
T 3oja_B 225 VVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP 301 (597)
T ss_dssp EEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCT
T ss_pred ccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCC
Confidence 1222233578888888888875 3678899999999999999998888999999999999999999985 677778899
Q ss_pred CCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCc
Q 013710 287 DMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNH 351 (437)
Q Consensus 287 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~ 351 (437)
+|++|+|++|.+. .+|..+..+++|++|++++|.+++. + +..+++|+.|++++|++.|+|.
T Consensus 302 ~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH
T ss_pred CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhH
Confidence 9999999999999 5677788899999999999999855 3 5678899999999999999886
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=8.1e-27 Score=251.43 Aligned_cols=274 Identities=22% Similarity=0.259 Sum_probs=179.8
Q ss_pred hccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccc
Q 013710 72 ALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSC 151 (437)
Q Consensus 72 ~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~ 151 (437)
+|+.|+++++.. ..+..+.++++++|++|+|++|...+.+++.+|.++++|++|+|++|+++.+ .|..+ ..+.+|+.
T Consensus 25 ~l~~LdLs~N~i-~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~p~~~-~~l~~L~~ 101 (844)
T 3j0a_A 25 TTERLLLSFNYI-RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL-HPDAF-QGLFHLFE 101 (844)
T ss_dssp TCCEEEEESCCC-CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE-CTTSS-CSCSSCCC
T ss_pred CcCEEECCCCcC-CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc-CHhHc-cCCcccCE
Confidence 466666655332 2444455566666666666666554555445666666666666666665432 01111 11111111
Q ss_pred cc----cCCC--CChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc----cC------
Q 013710 152 IH----SLHH--LSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH----SN------ 215 (437)
Q Consensus 152 l~----~l~~--l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~----~~------ 215 (437)
+. .+.. .....+.++++|++|++++|.+.....+..++++++|++|++++|.+++..+..+. ++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 11 1111 11223666777777777777765544444566777777777777766654444332 22
Q ss_pred ------------------------ccEEEccCCcCCCCCChhcc------------------------------------
Q 013710 216 ------------------------LTHVDFSGNQLKGKIPTSIT------------------------------------ 235 (437)
Q Consensus 216 ------------------------L~~L~Ls~n~l~~~~~~~l~------------------------------------ 235 (437)
|++|++++|.+.+..+..+.
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 66777777665543333222
Q ss_pred C--CCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCC
Q 013710 236 L--LENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLR 313 (437)
Q Consensus 236 ~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~ 313 (437)
+ .++|+.|++++|.+.+..+..|..+++|+.|++++|++.+..+..|..+++|++|+|++|++++..+..|.++++|+
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence 1 25788888888888877777888889999999999999877788888899999999999999887788888999999
Q ss_pred EEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCC
Q 013710 314 YLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLC 348 (437)
Q Consensus 314 ~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c 348 (437)
+|++++|++++..+..+..+++|+.|++++|....
T Consensus 342 ~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp EEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred EEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 99999999987777778889999999999997653
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=1.1e-27 Score=246.06 Aligned_cols=167 Identities=22% Similarity=0.209 Sum_probs=118.3
Q ss_pred cCCcCccEEEeeCCcccccCCcc---cc--cCccEEEccCCcCCCCCC--hhccCCCCCcEEEccCCCCCCCCCcccCCC
Q 013710 189 GNMHKLRSVTISNANVTGYIPKH---LH--SNLTHVDFSGNQLKGKIP--TSITLLENLQHLNLSSNGLNGEIPSSIGDL 261 (437)
Q Consensus 189 ~~l~~L~~L~L~~n~l~~~~~~~---~~--~~L~~L~Ls~n~l~~~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 261 (437)
.++++|++|++++|.+.+..+.. +. ++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..+
T Consensus 331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~ 409 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWP 409 (549)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCC
T ss_pred hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhccc
Confidence 34666777777777766544321 22 667777777777664321 34666777777777777776 556666666
Q ss_pred cccceeecccccCCCCCcc------------------ccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCC
Q 013710 262 IALKNVSLASNSLSGSVPE------------------SMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFH 323 (437)
Q Consensus 262 ~~L~~L~L~~n~l~~~~~~------------------~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 323 (437)
++|++|++++|++++ ++. ....+++|++|+|++|+++ .+|. ...+++|++|++++|+++
T Consensus 410 ~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~ 486 (549)
T 2z81_A 410 EKMRFLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLK 486 (549)
T ss_dssp TTCCEEECTTSCCSC-CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCC
T ss_pred ccccEEECCCCCccc-ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccC
Confidence 666666666666652 111 1236788999999999998 5554 467899999999999999
Q ss_pred CCCCCCcccCCCCCEEEecCCCCCCcCc--cccccccc
Q 013710 324 GVLPFNASILEKLQVFKVGGNTNLCYNH--TVLSSKLK 359 (437)
Q Consensus 324 ~~~~~~l~~l~~L~~L~l~~N~~~c~~~--~~~~~~~~ 359 (437)
+..+..+..+++|+.|++++|++.|+|+ .++..|..
T Consensus 487 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~ 524 (549)
T 2z81_A 487 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLN 524 (549)
T ss_dssp CCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHHH
T ss_pred CcCHHHHhcCcccCEEEecCCCccCCCccHHHHHHHHH
Confidence 8888889999999999999999999998 34444443
No 28
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=5.5e-27 Score=243.78 Aligned_cols=274 Identities=20% Similarity=0.208 Sum_probs=211.6
Q ss_pred hccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccc
Q 013710 72 ALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSC 151 (437)
Q Consensus 72 ~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~ 151 (437)
.|+.+++.++.. ..+..+.++++++|++|++++|.+. .++ ..+.++++|++|++++|+++.+ +......+.+++.
T Consensus 255 ~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~-~lp-~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~ 329 (606)
T 3t6q_A 255 SVESINLQKHYF-FNISSNTFHCFSGLQELDLTATHLS-ELP-SGLVGLSTLKKLVLSANKFENL--CQISASNFPSLTH 329 (606)
T ss_dssp EEEEEECTTCCC-SSCCTTTTTTCTTCSEEECTTSCCS-CCC-SSCCSCTTCCEEECTTCCCSBG--GGGCGGGCTTCSE
T ss_pred ceeEEEeecCcc-CccCHHHhccccCCCEEeccCCccC-CCC-hhhcccccCCEEECccCCcCcC--chhhhhccCcCCE
Confidence 466777766432 2555566888899999999999886 566 5788999999999999988643 2211112222222
Q ss_pred cc----cC-CCCChhhhcCCCCCCEEEeecCCCCCCc-hhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccC
Q 013710 152 IH----SL-HHLSGVFLSRFVNLTDLTVTNVPVNASG-LYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSG 223 (437)
Q Consensus 152 l~----~l-~~l~~~~~~~l~~L~~L~ls~n~l~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~ 223 (437)
+. .+ ..+....+..+++|++|++++|.+.... .+..+.++++|++|++++|++.+..+..+. ++|++|++++
T Consensus 330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 409 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAF 409 (606)
T ss_dssp EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTT
T ss_pred EECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCC
Confidence 21 11 1334445778899999999999886543 145688889999999999998877777765 8899999999
Q ss_pred CcCCCCCCh-hccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCC---CccccCCCCCCCeeeccCCcCC
Q 013710 224 NQLKGKIPT-SITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGS---VPESMASLTDMVHLDLSSNQLN 299 (437)
Q Consensus 224 n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~L~~N~l~ 299 (437)
|.+.+..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|++.+. .+..+..+++|++|++++|+++
T Consensus 410 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~ 489 (606)
T 3t6q_A 410 TRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489 (606)
T ss_dssp CCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC
T ss_pred CcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccC
Confidence 998866544 488899999999999999888888888999999999999998753 2356788899999999999999
Q ss_pred CcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCc
Q 013710 300 GTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNH 351 (437)
Q Consensus 300 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~ 351 (437)
+..|..|..+++|++|++++|++++..|..+..+++| .|++++|...-..+
T Consensus 490 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540 (606)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred ccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCH
Confidence 8888889999999999999999998888888889999 99999998775444
No 29
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=3.2e-26 Score=237.99 Aligned_cols=110 Identities=15% Similarity=0.200 Sum_probs=67.8
Q ss_pred hhhhhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccc
Q 013710 68 KQIRALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLL 147 (437)
Q Consensus 68 ~~~~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~ 147 (437)
..+++|+.|+++++.. ..+..+.++++++|++|+|++|.+.+..+ ..|+++++|++|++++|+++.+ +......+.
T Consensus 53 ~~l~~L~~L~Ls~n~l-~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~ 128 (606)
T 3vq2_A 53 SNFSELQWLDLSRCEI-ETIEDKAWHGLHHLSNLILTGNPIQSFSP-GSFSGLTSLENLVAVETKLASL--ESFPIGQLI 128 (606)
T ss_dssp TTCTTCCEEECTTCCC-CEECTTTTTTCTTCCEEECTTCCCCCCCT-TSSTTCTTCCEEECTTSCCCCS--SSSCCTTCT
T ss_pred cCCccCcEEeCCCCcc-cccCHHHhhchhhcCEeECCCCcccccCh-hhcCCcccCCEEEccCCccccc--cccccCCCC
Confidence 4556677777766432 24455667778888888888888765444 6788888888888888887654 221111222
Q ss_pred cccccc----cCCCCC-hhhhcCCCCCCEEEeecCCCCC
Q 013710 148 SFSCIH----SLHHLS-GVFLSRFVNLTDLTVTNVPVNA 181 (437)
Q Consensus 148 ~l~~l~----~l~~l~-~~~~~~l~~L~~L~ls~n~l~~ 181 (437)
+++.+. .+..+. ...++++++|++|++++|.+..
T Consensus 129 ~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 129 TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 222221 111211 3457888999999998887653
No 30
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.95 E-value=1.3e-26 Score=218.68 Aligned_cols=190 Identities=22% Similarity=0.215 Sum_probs=157.6
Q ss_pred CCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccccCccEEEccCCcCCCCCChhccCCCCCcEEEcc
Q 013710 167 VNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLS 246 (437)
Q Consensus 167 ~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 246 (437)
++++.|++++|.+... .+..+.++++|++|++++|.+++..+....++|++|++++|+++ .+|..+..+++|++|+++
T Consensus 31 ~~l~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 31 KDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TTCCEEECTTSCCSEE-EGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECC
T ss_pred CCCCEEEcCCCcCCcc-CHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECC
Confidence 4566677777766433 34567778888888888888875444333388999999999988 677788899999999999
Q ss_pred CCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCC
Q 013710 247 SNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVL 326 (437)
Q Consensus 247 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 326 (437)
+|++++..+..|..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|+++ .+
T Consensus 109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~i 187 (290)
T 1p9a_G 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI 187 (290)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CC
T ss_pred CCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-cc
Confidence 99999777788999999999999999999777777889999999999999999777778889999999999999999 67
Q ss_pred CCCcccCCCCCEEEecCCCCCCcCc-cccccccc
Q 013710 327 PFNASILEKLQVFKVGGNTNLCYNH-TVLSSKLK 359 (437)
Q Consensus 327 ~~~l~~l~~L~~L~l~~N~~~c~~~-~~~~~~~~ 359 (437)
|..+....+|+.+++++|+|.|+|. .++..|..
T Consensus 188 p~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~ 221 (290)
T 1p9a_G 188 PKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQ 221 (290)
T ss_dssp CTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHH
T ss_pred ChhhcccccCCeEEeCCCCccCcCccHHHHHHHH
Confidence 7778888899999999999999997 33444443
No 31
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=3.7e-26 Score=233.22 Aligned_cols=110 Identities=22% Similarity=0.268 Sum_probs=47.9
Q ss_pred CCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCC--CCccccCCCCCCCeeeccCCcCCCcchh-hhcCCCCC
Q 013710 236 LLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSG--SVPESMASLTDMVHLDLSSNQLNGTIPR-FFSDLKKL 312 (437)
Q Consensus 236 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~L~~N~l~~~~~~-~l~~l~~L 312 (437)
.+++|++|++++|.+++..+..+..+++|++|++++|++++ .+|..+..+++|++|++++|++.+.+|. .+..+++|
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 34444444444444444444444444444444444444443 2233344444444444444444432222 23444444
Q ss_pred CEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCC
Q 013710 313 RYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNL 347 (437)
Q Consensus 313 ~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~ 347 (437)
++|++++|++++..+..+. ++|+.|++++|...
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~ 434 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK 434 (520)
T ss_dssp CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC
T ss_pred CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc
Confidence 4444444444433332221 34444444444433
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=1.4e-25 Score=215.65 Aligned_cols=225 Identities=19% Similarity=0.253 Sum_probs=192.6
Q ss_pred CCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCEEEee
Q 013710 96 SHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTVT 175 (437)
Q Consensus 96 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L~ls 175 (437)
+++++|+|++|++.+ ++...|.++++|++|++++|+++.+ ....+..+++|++|+++
T Consensus 52 ~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~----------------------~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 52 PDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKI----------------------SPGAFAPLVKLERLYLS 108 (330)
T ss_dssp TTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSSCCCCB----------------------CTTTTTTCTTCCEEECC
T ss_pred CCCeEEECCCCcCCE-eChhhhccCCCCCEEECCCCcCCee----------------------CHHHhcCCCCCCEEECC
Confidence 589999999999865 4446899999999999999998753 12356789999999999
Q ss_pred cCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCC--CCChhccCCCCCcEEEccCCCCC
Q 013710 176 NVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKG--KIPTSITLLENLQHLNLSSNGLN 251 (437)
Q Consensus 176 ~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~~n~l~ 251 (437)
+|.+.. ++..+. ++|++|++++|.+++..+..+. ++|++|++++|.+.. ..+..+.++++|++|++++|.++
T Consensus 109 ~n~l~~--l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 109 KNQLKE--LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SSCCSB--CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCcCCc--cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 999863 333232 7999999999999976655555 899999999999963 66778999999999999999998
Q ss_pred CCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcc
Q 013710 252 GEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNAS 331 (437)
Q Consensus 252 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 331 (437)
.+|..+. ++|++|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|++|++++|+++ .+|..+.
T Consensus 185 -~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 260 (330)
T 1xku_A 185 -TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260 (330)
T ss_dssp -SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred -cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence 4555543 79999999999999877889999999999999999999887778999999999999999999 7788899
Q ss_pred cCCCCCEEEecCCCCCCcCc
Q 013710 332 ILEKLQVFKVGGNTNLCYNH 351 (437)
Q Consensus 332 ~l~~L~~L~l~~N~~~c~~~ 351 (437)
.+++|++|++++|+......
T Consensus 261 ~l~~L~~L~l~~N~i~~~~~ 280 (330)
T 1xku_A 261 DHKYIQVVYLHNNNISAIGS 280 (330)
T ss_dssp TCSSCCEEECCSSCCCCCCT
T ss_pred cCCCcCEEECCCCcCCccCh
Confidence 99999999999998765444
No 33
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=4.1e-26 Score=213.06 Aligned_cols=216 Identities=22% Similarity=0.276 Sum_probs=159.4
Q ss_pred CCCC--ccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCC
Q 013710 82 SACS--LYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLS 159 (437)
Q Consensus 82 ~~c~--~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~ 159 (437)
+.|. +..|... .+.++++++++++. .+| ..+. ++|++|++++|+++.+ +
T Consensus 3 ~~C~~~~~~C~c~---~~~~~l~~~~~~l~-~ip-~~~~--~~l~~L~l~~n~l~~~--~-------------------- 53 (270)
T 2o6q_A 3 ALCKKDGGVCSCN---NNKNSVDCSSKKLT-AIP-SNIP--ADTKKLDLQSNKLSSL--P-------------------- 53 (270)
T ss_dssp CCBGGGTCSBEEE---TTTTEEECTTSCCS-SCC-SCCC--TTCSEEECCSSCCSCC--C--------------------
T ss_pred ccCCCCCCCCEeC---CCCCEEEccCCCCC-ccC-CCCC--CCCCEEECcCCCCCee--C--------------------
Confidence 4455 4455433 25678888888875 455 2232 5788888888877543 1
Q ss_pred hhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCC
Q 013710 160 GVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLL 237 (437)
Q Consensus 160 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l 237 (437)
. ..+.++++|++|++++|.+++..+..+. ++|++|++++|.+++..+..|..+
T Consensus 54 ~-------------------------~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 108 (270)
T 2o6q_A 54 S-------------------------KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQL 108 (270)
T ss_dssp T-------------------------TSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred H-------------------------HHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccc
Confidence 1 1234444555555555555422222222 556666666666665555677888
Q ss_pred CCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEec
Q 013710 238 ENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNL 317 (437)
Q Consensus 238 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 317 (437)
++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|+|++|++++..+..|..+++|++|++
T Consensus 109 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 188 (270)
T 2o6q_A 109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL 188 (270)
T ss_dssp SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEEC
Confidence 89999999999998777777889999999999999998666666889999999999999999877778999999999999
Q ss_pred cCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCc
Q 013710 318 QNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNH 351 (437)
Q Consensus 318 ~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~ 351 (437)
++|++++..+..+..+++|+.|++++|+|.|+|.
T Consensus 189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 189 DNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 9999997777778889999999999999999997
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=1.6e-26 Score=227.42 Aligned_cols=269 Identities=16% Similarity=0.187 Sum_probs=186.3
Q ss_pred hhhhhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccc
Q 013710 68 KQIRALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLL 147 (437)
Q Consensus 68 ~~~~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~ 147 (437)
-.+.+++.+++.++.. ..+.-+.++++++|++|+|++|.+.+ ++...|.++++|++|++++|+++.+ +......+.
T Consensus 42 ~~l~~l~~l~l~~~~l-~~l~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~ 117 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYL--PPHVFQNVP 117 (390)
T ss_dssp GGGCCCSEEEEESCEE-SEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTCT
T ss_pred cccCCceEEEecCCch-hhCChhHhcccccCcEEECCCCcccc-cChhhccCCCCcCEEECCCCCCCcC--CHHHhcCCC
Confidence 3467788888866332 12333335667899999999999864 4447899999999999999998765 433222333
Q ss_pred ccccc----ccCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccccCccEEEccC
Q 013710 148 SFSCI----HSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSG 223 (437)
Q Consensus 148 ~l~~l----~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~Ls~ 223 (437)
+++.+ +.+..++...+.++++|++|++++|.+... .+..+.++++|++|++++|.+++. +....++|+.|++++
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSY 195 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTSSCTTCCEEECCSSCCSBC-CGGGCTTCSEEECCS
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCcc-ChhhccCCCCCCEEECCCCcCCcc-ccccccccceeeccc
Confidence 33332 244466666778889999999999988644 445688889999999999988753 222224454444444
Q ss_pred C-------------------cCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCC
Q 013710 224 N-------------------QLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMAS 284 (437)
Q Consensus 224 n-------------------~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 284 (437)
| .+... +. ...++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+..+..
T Consensus 196 n~l~~~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 196 NLLSTLAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp SCCSEEECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred ccccccCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence 4 44322 11 1235677777777777643 46777788888888888887766777788
Q ss_pred CCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCc
Q 013710 285 LTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCY 349 (437)
Q Consensus 285 l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~ 349 (437)
+++|++|+|++|++++ ++..+..+++|++|++++|+++ .+|..+..+++|+.|++++|+..-.
T Consensus 271 l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 271 MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL 333 (390)
T ss_dssp CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee
Confidence 8888888888888874 4555667788888888888887 4555667778888888888875443
No 35
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1e-26 Score=218.88 Aligned_cols=235 Identities=17% Similarity=0.210 Sum_probs=196.2
Q ss_pred CCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCEEEe
Q 013710 95 FSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTV 174 (437)
Q Consensus 95 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L~l 174 (437)
.++|++|+|++|.+.+ ++...|.++++|++|++++|.++.+ ....+..+++|++|++
T Consensus 31 ~~~l~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~l~~~----------------------~~~~~~~l~~L~~L~l 87 (285)
T 1ozn_A 31 PAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARI----------------------DAAAFTGLALLEQLDL 87 (285)
T ss_dssp CTTCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCEE----------------------CTTTTTTCTTCCEEEC
T ss_pred CCCceEEEeeCCcCCc-cCHHHcccCCCCCEEECCCCcccee----------------------CHhhcCCccCCCEEeC
Confidence 4689999999999865 4447899999999999999988643 2235678999999999
Q ss_pred ecCC-CCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCC
Q 013710 175 TNVP-VNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLN 251 (437)
Q Consensus 175 s~n~-l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 251 (437)
++|. +... .+..+..+++|++|++++|.+++..+..+. ++|++|++++|.+++..+..|..+++|++|++++|.++
T Consensus 88 ~~n~~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 166 (285)
T 1ozn_A 88 SDNAQLRSV-DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166 (285)
T ss_dssp CSCTTCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCcccc-CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc
Confidence 9997 6543 456788999999999999999977676665 89999999999999777778999999999999999999
Q ss_pred CCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcc
Q 013710 252 GEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNAS 331 (437)
Q Consensus 252 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 331 (437)
+..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+....+. ..
T Consensus 167 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-~~ 245 (285)
T 1ozn_A 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RP 245 (285)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HH
T ss_pred ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc-HH
Confidence 76666799999999999999999988889999999999999999999988888899999999999999999854332 11
Q ss_pred cCCCCCEEEecCCCCCCcCcccc
Q 013710 332 ILEKLQVFKVGGNTNLCYNHTVL 354 (437)
Q Consensus 332 ~l~~L~~L~l~~N~~~c~~~~~~ 354 (437)
.+..++.+..+.+...|..+..+
T Consensus 246 ~~~~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 246 LWAWLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp HHHHHHHCCSEECCCBEEESGGG
T ss_pred HHHHHHhcccccCccccCCchHh
Confidence 22234445567788888766443
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=1.6e-25 Score=216.54 Aligned_cols=259 Identities=22% Similarity=0.261 Sum_probs=143.9
Q ss_pred hhhhhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccc
Q 013710 68 KQIRALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLL 147 (437)
Q Consensus 68 ~~~~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~ 147 (437)
..+++|+.|+++++.... +.. +.++++|++|++++|.+.. + ..|.++++|++|++++|.++.+ +. + ..+.
T Consensus 63 ~~~~~L~~L~l~~n~i~~-~~~--~~~l~~L~~L~L~~n~i~~-~--~~~~~l~~L~~L~l~~n~i~~~--~~-~-~~l~ 132 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQITD-ISP--LSNLVKLTNLYIGTNKITD-I--SALQNLTNLRELYLNEDNISDI--SP-L-ANLT 132 (347)
T ss_dssp GGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCC-C--GGGTTCTTCSEEECTTSCCCCC--GG-G-TTCT
T ss_pred hhcCCccEEEccCCcccc-chh--hhcCCcCCEEEccCCcccC-c--hHHcCCCcCCEEECcCCcccCc--hh-h-ccCC
Confidence 345556666665533221 111 5556666666666666543 2 2466666666666666666543 11 0 0111
Q ss_pred ccccc-----ccCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccccCccEEEcc
Q 013710 148 SFSCI-----HSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFS 222 (437)
Q Consensus 148 ~l~~l-----~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~Ls 222 (437)
+++.+ ..+..+ ..+..+++|++|++++|.+..... +..+++|++|++++|.+.+..+....++|+.|+++
T Consensus 133 ~L~~L~l~~n~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~ 207 (347)
T 4fmz_A 133 KMYSLNLGANHNLSDL--SPLSNMTGLNYLTVTESKVKDVTP---IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAY 207 (347)
T ss_dssp TCCEEECTTCTTCCCC--GGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECC
T ss_pred ceeEEECCCCCCcccc--cchhhCCCCcEEEecCCCcCCchh---hccCCCCCEEEccCCcccccccccCCCccceeecc
Confidence 11111 011111 125566666666666666643311 55666666666666666643321111666666666
Q ss_pred CCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcc
Q 013710 223 GNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTI 302 (437)
Q Consensus 223 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 302 (437)
+|.+.+..+ +..+++|++|++++|.+++.. . +..+++|++|++++|.+++. ..+..+++|++|++++|++++.
T Consensus 208 ~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~- 280 (347)
T 4fmz_A 208 VNQITDITP--VANMTRLNSLKIGNNKITDLS-P-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI- 280 (347)
T ss_dssp SSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-
T ss_pred cCCCCCCch--hhcCCcCCEEEccCCccCCCc-c-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-
Confidence 666653322 566666777777776666332 2 66666677777777666632 3456666677777777766643
Q ss_pred hhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCc
Q 013710 303 PRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCY 349 (437)
Q Consensus 303 ~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~ 349 (437)
..+..+++|++|++++|++++..+..+..+++|+.|++++|+....
T Consensus 281 -~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~ 326 (347)
T 4fmz_A 281 -SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI 326 (347)
T ss_dssp -GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred -hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence 3456666677777777766666556666666777777777765543
No 37
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.8e-27 Score=226.27 Aligned_cols=261 Identities=17% Similarity=0.189 Sum_probs=212.3
Q ss_pred hhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCc--CChhhhCCCCCCCEEecccCCCCCCCCCchhhhcccc
Q 013710 71 RALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDIS--LSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLS 148 (437)
Q Consensus 71 ~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~--~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~ 148 (437)
++|+.|+++++..- .+..+.++++++|++|+|++|.+... .+ ..+.++++|++|++++|.++.+ |.
T Consensus 28 ~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n~i~~l--~~-------- 95 (306)
T 2z66_A 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCS-QSDFGTTSLKYLDLSFNGVITM--SS-------- 95 (306)
T ss_dssp TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEE-HHHHSCSCCCEEECCSCSEEEE--EE--------
T ss_pred CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcc-cccccccccCEEECCCCccccC--hh--------
Confidence 46889999875432 45555678899999999999998632 23 4677899999999999987532 21
Q ss_pred ccccccCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcC
Q 013710 149 FSCIHSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQL 226 (437)
Q Consensus 149 l~~l~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l 226 (437)
.+..+++|++|++++|.+........+..+++|++|++++|.+.+..+..+. ++|++|++++|.+
T Consensus 96 -------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 96 -------------NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp -------------EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred -------------hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence 3567899999999999987554335688999999999999999987777665 8999999999999
Q ss_pred CC-CCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhh
Q 013710 227 KG-KIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRF 305 (437)
Q Consensus 227 ~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 305 (437)
.+ ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+|++|++++..+..
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 86 57888999999999999999999877889999999999999999999777778899999999999999999888888
Q ss_pred hcCCC-CCCEEeccCCcCCCCCC--CCcccCCCCCEEEecCCCCCCcCcccccc
Q 013710 306 FSDLK-KLRYLNLQNNNFHGVLP--FNASILEKLQVFKVGGNTNLCYNHTVLSS 356 (437)
Q Consensus 306 l~~l~-~L~~L~L~~N~l~~~~~--~~l~~l~~L~~L~l~~N~~~c~~~~~~~~ 356 (437)
+..++ +|++|++++|.+++... .....+.+.+.+.+..+...|..+..+.+
T Consensus 243 ~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp CCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred HHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence 98885 99999999999986422 11122334445566778888877655444
No 38
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=1.3e-26 Score=242.03 Aligned_cols=275 Identities=19% Similarity=0.215 Sum_probs=209.2
Q ss_pred hhhhhhccccccccCCCCCcc-----------------ccCCCC--CCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEe
Q 013710 67 PKQIRALQSLNIPSKSACSLY-----------------KCDSSK--PFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLT 127 (437)
Q Consensus 67 ~~~~~~L~~l~~~~~~~c~~~-----------------~~~~~~--~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ 127 (437)
...+.+|+.|+++++..- +. ..+.++ ++++|++|+|++|.+.+.+| ..|.++++|++|+
T Consensus 202 l~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~ 279 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFV-AENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLIN 279 (636)
T ss_dssp GGGCTTCCEEEEESCCCC-GGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCCEEE
T ss_pred HhcccCCCEEECcCCccc-cccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-HHHhcCCCCCEEE
Confidence 456777888888875532 32 556777 89999999999999988888 7899999999999
Q ss_pred cccCC-CCCCCCCchhhhc-----ccccccc----ccCCCCCh-hhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccE
Q 013710 128 FFNCP-IAPIHFPNDLSLS-----LLSFSCI----HSLHHLSG-VFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRS 196 (437)
Q Consensus 128 L~~n~-l~~i~lp~~l~~~-----l~~l~~l----~~l~~l~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~ 196 (437)
+++|+ ++...+|..+... +.+++.+ +.+..++. ..+.++++|++|++++|.+.+. ++ .+..+++|++
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~-ip-~~~~l~~L~~ 357 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK-LP-AFGSEIKLAS 357 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEE-CC-CCEEEEEESE
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccc-hh-hhCCCCCCCE
Confidence 99998 7641235444311 1222222 22334443 2678889999999999988633 44 6888889999
Q ss_pred EEeeCCcccccCCcccc--cC-ccEEEccCCcCCCCCChhccCCC--CCcEEEccCCCCCCCCCcccC-------CCccc
Q 013710 197 VTISNANVTGYIPKHLH--SN-LTHVDFSGNQLKGKIPTSITLLE--NLQHLNLSSNGLNGEIPSSIG-------DLIAL 264 (437)
Q Consensus 197 L~L~~n~l~~~~~~~~~--~~-L~~L~Ls~n~l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~l~-------~l~~L 264 (437)
|++++|+++ .+|..+. ++ |++|++++|.++ .+|..+..+. +|++|++++|.+++..|..+. .+.+|
T Consensus 358 L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L 435 (636)
T 4eco_A 358 LNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435 (636)
T ss_dssp EECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE
T ss_pred EECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC
Confidence 999999988 6777666 66 999999999988 6777777654 899999999999888888887 77889
Q ss_pred ceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCC-------CCCCEEeccCCcCCCCCCCCcc--cCCC
Q 013710 265 KNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDL-------KKLRYLNLQNNNFHGVLPFNAS--ILEK 335 (437)
Q Consensus 265 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l-------~~L~~L~L~~N~l~~~~~~~l~--~l~~ 335 (437)
++|++++|+++...+..+..+++|++|+|++|+++......+... ++|++|++++|+++ .+|..+. .+++
T Consensus 436 ~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~ 514 (636)
T 4eco_A 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPY 514 (636)
T ss_dssp EEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTT
T ss_pred CEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCC
Confidence 999999999985444456678899999999999984333333333 28999999999999 6777776 8899
Q ss_pred CCEEEecCCCCCC
Q 013710 336 LQVFKVGGNTNLC 348 (437)
Q Consensus 336 L~~L~l~~N~~~c 348 (437)
|+.|++++|+...
T Consensus 515 L~~L~Ls~N~l~~ 527 (636)
T 4eco_A 515 LVGIDLSYNSFSK 527 (636)
T ss_dssp CCEEECCSSCCSS
T ss_pred cCEEECCCCCCCC
Confidence 9999999998765
No 39
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=8.9e-28 Score=229.27 Aligned_cols=244 Identities=23% Similarity=0.288 Sum_probs=199.3
Q ss_pred hhccccccccCCCCCc--cccCCCCCCCCeeEEEccC-CCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccc
Q 013710 71 RALQSLNIPSKSACSL--YKCDSSKPFSHLLSLRLSN-CSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLL 147 (437)
Q Consensus 71 ~~L~~l~~~~~~~c~~--~~~~~~~~l~~L~~L~Ls~-n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~ 147 (437)
.+++.|+++++..- + ...+.++++++|++|+|++ |.+.+.++ ..|.++++|++|++++|+++.. +|..+ .
T Consensus 50 ~~l~~L~L~~~~l~-~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p-~~l~~l~~L~~L~Ls~n~l~~~-~p~~~----~ 122 (313)
T 1ogq_A 50 YRVNNLDLSGLNLP-KPYPIPSSLANLPYLNFLYIGGINNLVGPIP-PAIAKLTQLHYLYITHTNVSGA-IPDFL----S 122 (313)
T ss_dssp CCEEEEEEECCCCS-SCEECCGGGGGCTTCSEEEEEEETTEESCCC-GGGGGCTTCSEEEEEEECCEEE-CCGGG----G
T ss_pred ceEEEEECCCCCcc-CCcccChhHhCCCCCCeeeCCCCCcccccCC-hhHhcCCCCCEEECcCCeeCCc-CCHHH----h
Confidence 46888888775443 3 4445677888999999994 88877776 6789999999999999988531 24332 2
Q ss_pred cccccccCC-------CCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCc-CccEEEeeCCcccccCCcccc-cCccE
Q 013710 148 SFSCIHSLH-------HLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMH-KLRSVTISNANVTGYIPKHLH-SNLTH 218 (437)
Q Consensus 148 ~l~~l~~l~-------~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~-~~L~~ 218 (437)
.+..++.+. ......+..+++|++|++++|.+... ++..+..++ +|++|++++|++++..|..+. -.|++
T Consensus 123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~ 201 (313)
T 1ogq_A 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA-IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAF 201 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE-CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSE
T ss_pred CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCc-CCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccE
Confidence 233332221 22334578899999999999999643 666788888 999999999999988888887 45999
Q ss_pred EEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcC
Q 013710 219 VDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQL 298 (437)
Q Consensus 219 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l 298 (437)
|++++|.+++..+..|..+++|++|++++|.+++..+. +..+++|++|++++|++++.+|..+..+++|++|+|++|++
T Consensus 202 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 202 VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp EECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred EECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 99999999988999999999999999999999866554 88899999999999999989999999999999999999999
Q ss_pred CCcchhhhcCCCCCCEEeccCCc-CCC
Q 013710 299 NGTIPRFFSDLKKLRYLNLQNNN-FHG 324 (437)
Q Consensus 299 ~~~~~~~l~~l~~L~~L~L~~N~-l~~ 324 (437)
++.+|.. ..+++|+.+++++|+ +.+
T Consensus 281 ~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 281 CGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred cccCCCC-ccccccChHHhcCCCCccC
Confidence 9888875 889999999999997 544
No 40
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=2.1e-26 Score=240.53 Aligned_cols=264 Identities=16% Similarity=0.235 Sum_probs=163.9
Q ss_pred hhhhccccccccCCCCCccccCCCCCCCCeeEEEccCCC-CCC-cCChhhhCCC------CCCCEEecccCCCCCCCCCc
Q 013710 69 QIRALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCS-DDI-SLSSTALKSL------STLQNLTFFNCPIAPIHFPN 140 (437)
Q Consensus 69 ~~~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~-~~~-~~~~~~~~~l------~~L~~L~L~~n~l~~i~lp~ 140 (437)
.+++|+.|+++++... +...+.++++++|++|+|++|+ +.+ .+| ..++++ ++|++|++++|+++. +|.
T Consensus 247 ~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp-~~~~~L~~~~~l~~L~~L~L~~n~l~~--ip~ 322 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNL-TKLPTFLKALPEMQLINVACNRGISGEQLK-DDWQALADAPVGEKIQIIYIGYNNLKT--FPV 322 (636)
T ss_dssp GCTTCCEEEEECCTTC-SSCCTTTTTCSSCCEEECTTCTTSCHHHHH-HHHHHHHHSGGGGTCCEEECCSSCCSS--CCC
T ss_pred ccCCCCEEEecCCcCC-ccChHHHhcCCCCCEEECcCCCCCccccch-HHHHhhhccccCCCCCEEECCCCcCCc--cCc
Confidence 6778888888774432 4445778888999999999998 776 565 556665 888888888888874 365
Q ss_pred --hhhhcccccccc----ccCC-CCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcC-ccEEEeeCCcccccCCccc
Q 013710 141 --DLSLSLLSFSCI----HSLH-HLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHK-LRSVTISNANVTGYIPKHL 212 (437)
Q Consensus 141 --~l~~~l~~l~~l----~~l~-~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~ 212 (437)
.+. .+.+++.+ +.+. .++ .+..+++|++|++++|.+. .++..+.++++ |++|++++|.++ .+|..+
T Consensus 323 ~~~l~-~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~ 396 (636)
T 4eco_A 323 ETSLQ-KMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNKLK-YIPNIF 396 (636)
T ss_dssp HHHHT-TCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSCCS-SCCSCC
T ss_pred hhhhc-cCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc--cccHhhhhhcccCcEEEccCCcCc-ccchhh
Confidence 332 22222222 1122 233 4556667777777777665 34555666666 777777777776 555544
Q ss_pred c----cCccEEEccCCcCCCCCChhcc-------CCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccc
Q 013710 213 H----SNLTHVDFSGNQLKGKIPTSIT-------LLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPES 281 (437)
Q Consensus 213 ~----~~L~~L~Ls~n~l~~~~~~~l~-------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 281 (437)
. ++|++|++++|.+.+..|..|. .+.+|++|++++|.++...+..+..+++|++|++++|+++ .+|..
T Consensus 397 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~ 475 (636)
T 4eco_A 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKN 475 (636)
T ss_dssp CTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSS
T ss_pred hhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHH
Confidence 4 2567777777777666666665 5566777777777666333333444666666666666666 33332
Q ss_pred -cCCC-------CCCCeeeccCCcCCCcchhhhc--CCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCC
Q 013710 282 -MASL-------TDMVHLDLSSNQLNGTIPRFFS--DLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNT 345 (437)
Q Consensus 282 -l~~l-------~~L~~L~L~~N~l~~~~~~~l~--~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~ 345 (437)
+... ++|++|+|++|+++ .+|..+. .+++|++|++++|++++ +|..+..+++|+.|++++|+
T Consensus 476 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~ 547 (636)
T 4eco_A 476 SLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQR 547 (636)
T ss_dssp SSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCB
T ss_pred HhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCc
Confidence 2211 26666666666666 4555554 66666666666666665 56666666666666665544
No 41
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=8e-26 Score=226.01 Aligned_cols=226 Identities=23% Similarity=0.359 Sum_probs=193.8
Q ss_pred hhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhcccccc
Q 013710 71 RALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFS 150 (437)
Q Consensus 71 ~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~ 150 (437)
.+++.|+++++.. ..+..+.++++++|++|+|++|.+.. ++...|.++++|++|+|++|+++.+
T Consensus 64 ~~l~~L~L~~n~i-~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~~-------------- 127 (440)
T 3zyj_A 64 TNTRLLNLHENQI-QIIKVNSFKHLRHLEILQLSRNHIRT-IEIGAFNGLANLNTLELFDNRLTTI-------------- 127 (440)
T ss_dssp TTCSEEECCSCCC-CEECTTTTSSCSSCCEEECCSSCCCE-ECGGGGTTCSSCCEEECCSSCCSSC--------------
T ss_pred CCCcEEEccCCcC-CeeCHHHhhCCCCCCEEECCCCcCCc-cChhhccCCccCCEEECCCCcCCee--------------
Confidence 4688899887543 35666788999999999999999864 5557899999999999999998743
Q ss_pred ccccCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCc-ccc--cCccEEEccCCcCC
Q 013710 151 CIHSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPK-HLH--SNLTHVDFSGNQLK 227 (437)
Q Consensus 151 ~l~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~--~~L~~L~Ls~n~l~ 227 (437)
....+..+++|++|++++|.+... ....+.++++|++|++++|+..+.++. .+. ++|++|++++|+++
T Consensus 128 --------~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 198 (440)
T 3zyj_A 128 --------PNGAFVYLSKLKELWLRNNPIESI-PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198 (440)
T ss_dssp --------CTTTSCSCSSCCEEECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS
T ss_pred --------CHhHhhccccCceeeCCCCccccc-CHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc
Confidence 333577899999999999999743 445688999999999999654445554 343 89999999999998
Q ss_pred CCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhc
Q 013710 228 GKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFS 307 (437)
Q Consensus 228 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 307 (437)
.+| .+..+++|++|+|++|.+++..+..|.++++|+.|++++|++++..+..|.++++|++|+|++|++++..+..|.
T Consensus 199 -~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 276 (440)
T 3zyj_A 199 -EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276 (440)
T ss_dssp -SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred -ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence 445 588999999999999999988889999999999999999999988888999999999999999999988888899
Q ss_pred CCCCCCEEeccCCcCC
Q 013710 308 DLKKLRYLNLQNNNFH 323 (437)
Q Consensus 308 ~l~~L~~L~L~~N~l~ 323 (437)
.+++|++|+|++|.+.
T Consensus 277 ~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 277 PLHHLERIHLHHNPWN 292 (440)
T ss_dssp SCTTCCEEECCSSCEE
T ss_pred cccCCCEEEcCCCCcc
Confidence 9999999999999876
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=3.5e-26 Score=219.62 Aligned_cols=223 Identities=18% Similarity=0.254 Sum_probs=193.1
Q ss_pred hhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhcccccc
Q 013710 71 RALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFS 150 (437)
Q Consensus 71 ~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~ 150 (437)
.+++.|+++++..- ...+.+..+++|++|+|++|.+. .++ ..+.++++|++|++++|+++.+ |.
T Consensus 81 ~~l~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n~l~-~lp-~~~~~l~~L~~L~Ls~n~l~~l--p~---------- 144 (328)
T 4fcg_A 81 PGRVALELRSVPLP--QFPDQAFRLSHLQHMTIDAAGLM-ELP-DTMQQFAGLETLTLARNPLRAL--PA---------- 144 (328)
T ss_dssp TTCCEEEEESSCCS--SCCSCGGGGTTCSEEEEESSCCC-CCC-SCGGGGTTCSEEEEESCCCCCC--CG----------
T ss_pred cceeEEEccCCCch--hcChhhhhCCCCCEEECCCCCcc-chh-HHHhccCCCCEEECCCCccccC--cH----------
Confidence 57888888875543 22344666899999999999997 676 6899999999999999998743 44
Q ss_pred ccccCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhh---------cCCcCccEEEeeCCcccccCCcccc--cCccEE
Q 013710 151 CIHSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVII---------GNMHKLRSVTISNANVTGYIPKHLH--SNLTHV 219 (437)
Q Consensus 151 ~l~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l---------~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L 219 (437)
.+.++++|++|++++|.+... ++..+ .++++|++|++++|+++ .+|..+. ++|++|
T Consensus 145 -----------~l~~l~~L~~L~L~~n~~~~~-~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L 211 (328)
T 4fcg_A 145 -----------SIASLNRLRELSIRACPELTE-LPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSL 211 (328)
T ss_dssp -----------GGGGCTTCCEEEEEEETTCCC-CCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEE
T ss_pred -----------HHhcCcCCCEEECCCCCCccc-cChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEE
Confidence 356889999999999877544 44434 34999999999999999 7787776 899999
Q ss_pred EccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCC
Q 013710 220 DFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLN 299 (437)
Q Consensus 220 ~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~ 299 (437)
++++|.+++ ++..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+.++++|++|+|++|.+.
T Consensus 212 ~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 212 KIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp EEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred EccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence 999999994 6668999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred CcchhhhcCCCCCCEEeccCCcCC
Q 013710 300 GTIPRFFSDLKKLRYLNLQNNNFH 323 (437)
Q Consensus 300 ~~~~~~l~~l~~L~~L~L~~N~l~ 323 (437)
+.+|..+.++++|+.+++..|.+.
T Consensus 291 ~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 291 SRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhccHHHhhccCceEEeCCHHHHH
Confidence 999999999999999999988665
No 43
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=8e-26 Score=238.20 Aligned_cols=273 Identities=21% Similarity=0.218 Sum_probs=174.2
Q ss_pred hhhhhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccc
Q 013710 68 KQIRALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLL 147 (437)
Q Consensus 68 ~~~~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~ 147 (437)
..+++|+.|+++++.. .++..+.++++++|++|+|++|.+. .++...|.++++|++|++++|+++.+ +......+.
T Consensus 46 ~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~ 121 (680)
T 1ziw_A 46 TRYSQLTSLDVGFNTI-SKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKI--KNNPFVKQK 121 (680)
T ss_dssp GGGTTCSEEECCSSCC-CCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCC--CSCTTTTCT
T ss_pred hCCCcCcEEECCCCcc-CccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCcc--ChhHccccC
Confidence 3455666666665332 2333344556677777777777764 34445677777777777777776543 322111222
Q ss_pred cccccc----cCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhh--cCCcCccEEEeeCCcccccCCcccc--------
Q 013710 148 SFSCIH----SLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVII--GNMHKLRSVTISNANVTGYIPKHLH-------- 213 (437)
Q Consensus 148 ~l~~l~----~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l--~~l~~L~~L~L~~n~l~~~~~~~~~-------- 213 (437)
+++.+. .+.......+.++++|++|++++|.+... .+..+ ..+++|++|++++|.+++..+..+.
T Consensus 122 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 200 (680)
T 1ziw_A 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL-KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200 (680)
T ss_dssp TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB-CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEE
T ss_pred CCCEEECCCCcccccCchhhcccccCCEEEccCCccccc-CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhh
Confidence 222221 12222223455677777777777776543 22222 2446777777777777655444322
Q ss_pred ---------------------cCccEEEccCCcCCCCCChhccCCCC--CcEEEccCCCCCCCCCcccCCCcccceeecc
Q 013710 214 ---------------------SNLTHVDFSGNQLKGKIPTSITLLEN--LQHLNLSSNGLNGEIPSSIGDLIALKNVSLA 270 (437)
Q Consensus 214 ---------------------~~L~~L~Ls~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 270 (437)
.+|++|++++|.+.+..+..|.++.. |++|++++|.+++..+..|..+++|++|+++
T Consensus 201 ~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (680)
T 1ziw_A 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLE 280 (680)
T ss_dssp ECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred hccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCC
Confidence 35667777777777666666666654 8888888888877667778888888888888
Q ss_pred cccCCCCCccccCCCCCCCeeeccCCcCCC-----cch----hhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEe
Q 013710 271 SNSLSGSVPESMASLTDMVHLDLSSNQLNG-----TIP----RFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKV 341 (437)
Q Consensus 271 ~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~-----~~~----~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l 341 (437)
+|++.+..+..+.++++|++|++++|...+ .+| ..|..+++|++|++++|++++..+..+..+++|++|++
T Consensus 281 ~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 360 (680)
T 1ziw_A 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360 (680)
T ss_dssp SCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEEC
T ss_pred CCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEEC
Confidence 888877777777777777777777765442 122 25677888888888888888877777888888888888
Q ss_pred cCCC
Q 013710 342 GGNT 345 (437)
Q Consensus 342 ~~N~ 345 (437)
++|.
T Consensus 361 s~n~ 364 (680)
T 1ziw_A 361 SNSF 364 (680)
T ss_dssp TTCB
T ss_pred CCCc
Confidence 8775
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=4.6e-26 Score=236.39 Aligned_cols=281 Identities=16% Similarity=0.180 Sum_probs=197.8
Q ss_pred hhhhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhcccc
Q 013710 69 QIRALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLS 148 (437)
Q Consensus 69 ~~~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~ 148 (437)
.+.+++.+++.++.. ..+..+.++++++|++|+|++|.+.+. ++..|.++++|++|+|++|.++.+ +......+.+
T Consensus 49 ~l~~l~~l~l~~~~l-~~lp~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~ 124 (597)
T 3oja_B 49 TLNNQKIVTFKNSTM-RKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYL--PPHVFQNVPL 124 (597)
T ss_dssp GGCCCSEEEESSCEE-SEECTHHHHHCCCCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCCC--CTTTTTTCTT
T ss_pred cCCCceEEEeeCCCC-CCcCHHHHccCCCCcEEECCCCCCCCC-ChHHhcCCCCCCEEECCCCcCCCC--CHHHHcCCCC
Confidence 355667777665322 233333456678999999999998754 447899999999999999999765 4433223333
Q ss_pred cccc----ccCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccccCccEEEccCC
Q 013710 149 FSCI----HSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGN 224 (437)
Q Consensus 149 l~~l----~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~Ls~n 224 (437)
+..+ +.+..++...+.++++|++|++++|.+... .+..+.++++|++|++++|.+++. +....++|+.|++++|
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYN 202 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECTTSCCSBC-CGGGCTTCSEEECCSS
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC-ChhhhhcCCcCcEEECcCCCCCCc-ChhhhhhhhhhhcccC
Confidence 3332 244466666678888899999998888644 445678888899999988888754 3222245555555544
Q ss_pred cCCC------------------CCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCC
Q 013710 225 QLKG------------------KIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLT 286 (437)
Q Consensus 225 ~l~~------------------~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 286 (437)
.+.+ .++.. ...+|+.|+|++|.+++ +..+..+++|+.|++++|.+.+..|..+..++
T Consensus 203 ~l~~l~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 278 (597)
T 3oja_B 203 LLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278 (597)
T ss_dssp CCSEEECCTTCSEEECCSSCCCEEECS--CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred ccccccCCchhheeeccCCcccccccc--cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCcc
Confidence 4432 11111 12468888888888875 36688888999999999999887788888899
Q ss_pred CCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCccccccccccc
Q 013710 287 DMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNHTVLSSKLKLG 361 (437)
Q Consensus 287 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~~~~~~~~~~~ 361 (437)
+|++|+|++|.+++ ++..+..+++|++|+|++|.++ .+|..+..+++|+.|++++|+........+..+..+.
T Consensus 279 ~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~ 351 (597)
T 3oja_B 279 RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLT 351 (597)
T ss_dssp SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEE
T ss_pred CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEE
Confidence 99999999999885 5666777889999999999988 5677778888999999999987544333333333333
No 45
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=2.1e-25 Score=229.90 Aligned_cols=112 Identities=22% Similarity=0.287 Sum_probs=72.1
Q ss_pred CCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCc-cccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCE
Q 013710 236 LLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVP-ESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRY 314 (437)
Q Consensus 236 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~ 314 (437)
.+++|++|++++|.+.+ .+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+.++++|++
T Consensus 371 ~~~~L~~L~l~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 449 (570)
T 2z63_A 371 GTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 449 (570)
T ss_dssp TCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred ccCccCEEECCCCcccc-ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcE
Confidence 34444444444444432 22225566677777777777765444 45667777777777777777666677777777777
Q ss_pred EeccCCcCC-CCCCCCcccCCCCCEEEecCCCCCC
Q 013710 315 LNLQNNNFH-GVLPFNASILEKLQVFKVGGNTNLC 348 (437)
Q Consensus 315 L~L~~N~l~-~~~~~~l~~l~~L~~L~l~~N~~~c 348 (437)
|++++|.++ +.+|..+..+++|+.|++++|...-
T Consensus 450 L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~ 484 (570)
T 2z63_A 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484 (570)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred EECcCCcCccccchhhhhcccCCCEEECCCCcccc
Confidence 777777776 4566667777777777777776543
No 46
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=9.3e-26 Score=231.70 Aligned_cols=107 Identities=20% Similarity=0.307 Sum_probs=82.1
Q ss_pred CCcEEEccCCCCCCCCCccc-CCCcccceeecccccCCCCCc---cccCCCCCCCeeeccCCcCCCcch--hhhcCCCCC
Q 013710 239 NLQHLNLSSNGLNGEIPSSI-GDLIALKNVSLASNSLSGSVP---ESMASLTDMVHLDLSSNQLNGTIP--RFFSDLKKL 312 (437)
Q Consensus 239 ~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~~N~l~~~~~--~~l~~l~~L 312 (437)
+|++|++++|.+. .+|..+ ..+++|++|++++|++.+..+ ..++.+++|++|+|++|++++..+ ..+..+++|
T Consensus 311 ~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L 389 (549)
T 2z81_A 311 KVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389 (549)
T ss_dssp TCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC
T ss_pred cceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC
Confidence 4555555566555 445444 468889999999999886553 336788899999999999986543 568889999
Q ss_pred CEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCC
Q 013710 313 RYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNL 347 (437)
Q Consensus 313 ~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~ 347 (437)
++|++++|+++ .+|..+..+++|++|++++|...
T Consensus 390 ~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~ 423 (549)
T 2z81_A 390 TSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423 (549)
T ss_dssp CEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS
T ss_pred CEEECCCCCCc-cCChhhcccccccEEECCCCCcc
Confidence 99999999998 67777888889999999998854
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=2.3e-25 Score=214.35 Aligned_cols=244 Identities=22% Similarity=0.234 Sum_probs=199.5
Q ss_pred hccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccc
Q 013710 72 ALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSC 151 (437)
Q Consensus 72 ~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~ 151 (437)
+++.++++++..- .+. ..+ .++|++|+|++|.+.+ +++..|.++++|++|++++|+++.+
T Consensus 34 ~l~~l~~~~~~l~-~ip-~~~--~~~l~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~--------------- 93 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVP-KEI--SPDTTLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNKISKI--------------- 93 (332)
T ss_dssp ETTEEECCSSCCS-SCC-SCC--CTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEE---------------
T ss_pred cCCEEECCCCCcc-ccC-CCC--CCCCeEEECCCCcCCc-cCHhHhhCCCCCcEEECCCCccCcc---------------
Confidence 4666666553321 111 112 3689999999999864 4447899999999999999988643
Q ss_pred cccCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCC--
Q 013710 152 IHSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLK-- 227 (437)
Q Consensus 152 l~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~-- 227 (437)
....+.++++|++|++++|.+.. ++..+. ++|++|++++|.+.+..+..+. ++|++|++++|.++
T Consensus 94 -------~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~ 162 (332)
T 2ft3_A 94 -------HEKAFSPLRKLQKLYISKNHLVE--IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 162 (332)
T ss_dssp -------CGGGSTTCTTCCEEECCSSCCCS--CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG
T ss_pred -------CHhHhhCcCCCCEEECCCCcCCc--cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC
Confidence 22357789999999999999873 333333 7999999999999965555555 89999999999996
Q ss_pred CCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhc
Q 013710 228 GKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFS 307 (437)
Q Consensus 228 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 307 (437)
+..+..+..+ +|++|++++|.+++ +|..+. ++|++|++++|.+++..+..+..+++|++|+|++|++++..+..+.
T Consensus 163 ~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 163 GFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp GSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred CCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence 3667788888 99999999999984 555544 7999999999999987778899999999999999999988888899
Q ss_pred CCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCc
Q 013710 308 DLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNH 351 (437)
Q Consensus 308 ~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~ 351 (437)
.+++|++|++++|+++ .+|..+..+++|+.|++++|+......
T Consensus 239 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~ 281 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGV 281 (332)
T ss_dssp GCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCT
T ss_pred CCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccCh
Confidence 9999999999999999 788889999999999999999776543
No 48
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=3.8e-25 Score=213.87 Aligned_cols=257 Identities=18% Similarity=0.241 Sum_probs=203.2
Q ss_pred hhhhhhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhcc
Q 013710 67 PKQIRALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSL 146 (437)
Q Consensus 67 ~~~~~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l 146 (437)
...+++|+.|+++++.... .+.++++++|++|++++|.+.+ ++ .+.++++|++|++++|..... ... +
T Consensus 84 ~~~l~~L~~L~L~~n~i~~---~~~~~~l~~L~~L~l~~n~i~~-~~--~~~~l~~L~~L~l~~n~~~~~--~~~----~ 151 (347)
T 4fmz_A 84 LSNLVKLTNLYIGTNKITD---ISALQNLTNLRELYLNEDNISD-IS--PLANLTKMYSLNLGANHNLSD--LSP----L 151 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC---CGGGTTCTTCSEEECTTSCCCC-CG--GGTTCTTCCEEECTTCTTCCC--CGG----G
T ss_pred hhcCCcCCEEEccCCcccC---chHHcCCCcCCEEECcCCcccC-ch--hhccCCceeEEECCCCCCccc--ccc----h
Confidence 4567788889987754322 2457888999999999999864 33 389999999999999964221 111 2
Q ss_pred ccccccccCC----CCCh-hhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccccCccEEEc
Q 013710 147 LSFSCIHSLH----HLSG-VFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDF 221 (437)
Q Consensus 147 ~~l~~l~~l~----~l~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~L 221 (437)
..+..+..+. .+.+ ..+..+++|++|++++|.+... .. +..+++|++|++++|.+.+..+....++|++|++
T Consensus 152 ~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l 228 (347)
T 4fmz_A 152 SNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDI--SP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKI 228 (347)
T ss_dssp TTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCC--GG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEEC
T ss_pred hhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccc--cc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEc
Confidence 2222222221 1111 1278899999999999998754 22 7889999999999999986555223389999999
Q ss_pred cCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCc
Q 013710 222 SGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGT 301 (437)
Q Consensus 222 s~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 301 (437)
++|.+++..+ +..+++|++|++++|.+++. +.+..+++|++|++++|++++. ..+..+++|++|++++|++++.
T Consensus 229 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~ 302 (347)
T 4fmz_A 229 GNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNE 302 (347)
T ss_dssp CSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGG
T ss_pred cCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCc
Confidence 9999985433 88999999999999999854 5689999999999999999854 4588899999999999999988
Q ss_pred chhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCC
Q 013710 302 IPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTN 346 (437)
Q Consensus 302 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~ 346 (437)
.+..+..+++|++|++++|++++..| +..+++|+.|++++|+.
T Consensus 303 ~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 303 DMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp GHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred ChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 89999999999999999999997666 78899999999999975
No 49
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=7.1e-26 Score=212.06 Aligned_cols=185 Identities=21% Similarity=0.229 Sum_probs=134.5
Q ss_pred CCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCcE
Q 013710 165 RFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQH 242 (437)
Q Consensus 165 ~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 242 (437)
++++|++|++++|.+... .+..+.++++|++|++++|.+++..+..+. ++|++|++++|.+.+..+..+..+++|++
T Consensus 50 ~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 128 (276)
T 2z62_A 50 SFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128 (276)
T ss_dssp TCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred cccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCE
Confidence 344444444444444321 222355566666666666666655444444 66777777777776555556788888888
Q ss_pred EEccCCCCCCC-CCcccCCCcccceeecccccCCCCCccccCCCCCCC----eeeccCCcCCCcchhhhcCCCCCCEEec
Q 013710 243 LNLSSNGLNGE-IPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMV----HLDLSSNQLNGTIPRFFSDLKKLRYLNL 317 (437)
Q Consensus 243 L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~L~~N~l~~~~~~~l~~l~~L~~L~L 317 (437)
|++++|.+++. +|..+..+++|++|++++|++++..+..+..+.+|+ +|++++|++++..+..+ ...+|++|++
T Consensus 129 L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~L 207 (276)
T 2z62_A 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELAL 207 (276)
T ss_dssp EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEEC
T ss_pred EECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEEC
Confidence 88888888753 578888888999999999988866666666666666 89999999986555544 4458999999
Q ss_pred cCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCc
Q 013710 318 QNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNH 351 (437)
Q Consensus 318 ~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~ 351 (437)
++|++++..+..+..+++|+.|++++|++.|+|+
T Consensus 208 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 208 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 9999997777777889999999999999999996
No 50
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.3e-26 Score=221.59 Aligned_cols=224 Identities=17% Similarity=0.173 Sum_probs=189.4
Q ss_pred CCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCE
Q 013710 92 SKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTD 171 (437)
Q Consensus 92 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~ 171 (437)
+..+++|++|+|++|.+.+ +++..|.++++|++|++++|+++.+ . .+..+++|++
T Consensus 30 ~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~----------------------~--~~~~l~~L~~ 84 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYET----------------------L--DLESLSTLRT 84 (317)
T ss_dssp HTTGGGCSEEECTTSCCCC-CCHHHHTTCTTCCEEECTTSCCEEE----------------------E--EETTCTTCCE
T ss_pred hccCCCCCEEECcCCccCc-CCHHHhhCCCcCCEEECCCCcCCcc----------------------h--hhhhcCCCCE
Confidence 3446799999999999965 4557899999999999999988542 0 2668899999
Q ss_pred EEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccccCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCC
Q 013710 172 LTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLN 251 (437)
Q Consensus 172 L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 251 (437)
|++++|.+.. +...++|++|++++|++++..+.. .++|++|++++|++++..+..+..+++|++|++++|.++
T Consensus 85 L~Ls~n~l~~------l~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 85 LDLNNNYVQE------LLVGPSIETLHAANNNISRVSCSR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp EECCSSEEEE------EEECTTCCEEECCSSCCSEEEECC-CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred EECcCCcccc------ccCCCCcCEEECCCCccCCcCccc-cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence 9999999853 234489999999999998654443 488999999999999877778999999999999999999
Q ss_pred CCCCccc-CCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCc
Q 013710 252 GEIPSSI-GDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNA 330 (437)
Q Consensus 252 ~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l 330 (437)
+..+..+ ..+++|++|++++|.+++. + ....+++|++|+|++|++++. +..+..+++|++|++++|+++ .+|..+
T Consensus 158 ~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~ 233 (317)
T 3o53_A 158 TVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKAL 233 (317)
T ss_dssp EEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTC
T ss_pred cccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHh
Confidence 7666666 4789999999999999854 3 334589999999999999954 445889999999999999999 567778
Q ss_pred ccCCCCCEEEecCCCCCCcCc
Q 013710 331 SILEKLQVFKVGGNTNLCYNH 351 (437)
Q Consensus 331 ~~l~~L~~L~l~~N~~~c~~~ 351 (437)
..+++|+.|++++|++.|++.
T Consensus 234 ~~l~~L~~L~l~~N~~~~~~~ 254 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGFHCGTL 254 (317)
T ss_dssp CCCTTCCEEECTTCCCBHHHH
T ss_pred hcCCCCCEEEccCCCccCcCH
Confidence 899999999999999998765
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=2.3e-25 Score=223.40 Aligned_cols=227 Identities=22% Similarity=0.305 Sum_probs=194.4
Q ss_pred hhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhcccccc
Q 013710 71 RALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFS 150 (437)
Q Consensus 71 ~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~ 150 (437)
.+|+.|+++++.. ..+..+.++++++|++|+|++|.+.+. ++..|.++++|++|+|++|+++.+
T Consensus 75 ~~l~~L~L~~n~i-~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~-------------- 138 (452)
T 3zyi_A 75 SNTRYLNLMENNI-QMIQADTFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNWLTVI-------------- 138 (452)
T ss_dssp TTCSEEECCSSCC-CEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCSBC--------------
T ss_pred CCccEEECcCCcC-ceECHHHcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCcCCcc--------------
Confidence 4689999988543 356677889999999999999999754 447899999999999999998743
Q ss_pred ccccCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcc-cc--cCccEEEccCCcCC
Q 013710 151 CIHSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKH-LH--SNLTHVDFSGNQLK 227 (437)
Q Consensus 151 ~l~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~--~~L~~L~Ls~n~l~ 227 (437)
....+..+++|++|++++|.+... ....+.++++|++|++++|+..+.++.. +. ++|++|++++|+++
T Consensus 139 --------~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 139 --------PSGAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp --------CTTTSSSCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred --------ChhhhcccCCCCEEECCCCCccee-CHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 334577899999999999999743 4456889999999999995544455543 43 89999999999998
Q ss_pred CCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhc
Q 013710 228 GKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFS 307 (437)
Q Consensus 228 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 307 (437)
+. + .+..+++|++|+|++|.+++..+..|.++++|+.|++++|++++..+..|.++++|++|+|++|++++..+..+.
T Consensus 210 ~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 287 (452)
T 3zyi_A 210 DM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287 (452)
T ss_dssp SC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSST
T ss_pred cc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhc
Confidence 54 4 588999999999999999988899999999999999999999988888999999999999999999988888889
Q ss_pred CCCCCCEEeccCCcCCC
Q 013710 308 DLKKLRYLNLQNNNFHG 324 (437)
Q Consensus 308 ~l~~L~~L~L~~N~l~~ 324 (437)
.+++|++|+|++|.+..
T Consensus 288 ~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 288 PLRYLVELHLHHNPWNC 304 (452)
T ss_dssp TCTTCCEEECCSSCEEC
T ss_pred cccCCCEEEccCCCcCC
Confidence 99999999999998763
No 52
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=1.2e-25 Score=240.04 Aligned_cols=263 Identities=18% Similarity=0.258 Sum_probs=161.0
Q ss_pred hhhhccccccccCCCCCccccCCCCCCCCeeEEEccCCC-CCC-cCChhhhC-------CCCCCCEEecccCCCCCCCCC
Q 013710 69 QIRALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCS-DDI-SLSSTALK-------SLSTLQNLTFFNCPIAPIHFP 139 (437)
Q Consensus 69 ~~~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~-~~~-~~~~~~~~-------~l~~L~~L~L~~n~l~~i~lp 139 (437)
.+++|+.|+++++... +.....++++++|++|+|++|+ +.+ .+| ..+. .+++|++|++++|+++. +|
T Consensus 489 ~L~~L~~L~Ls~N~l~-~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP-~~i~~L~~~~~~l~~L~~L~Ls~N~L~~--ip 564 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNM-TQLPDFLYDLPELQSLNIACNRGISAAQLK-ADWTRLADDEDTGPKIQIFYMGYNNLEE--FP 564 (876)
T ss_dssp GCTTCCEEEEESCTTC-CSCCGGGGGCSSCCEEECTTCTTSCHHHHH-HHHHHHHHCTTTTTTCCEEECCSSCCCB--CC
T ss_pred cCCCCCEEECcCCCCC-ccChHHHhCCCCCCEEECcCCCCcccccch-HHHHhhhhcccccCCccEEEeeCCcCCc--cC
Confidence 6677888888774432 3333566777888888888887 665 454 3333 34488888888888763 35
Q ss_pred c--hhhhcccccccc----ccCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcC-ccEEEeeCCcccccCCccc
Q 013710 140 N--DLSLSLLSFSCI----HSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHK-LRSVTISNANVTGYIPKHL 212 (437)
Q Consensus 140 ~--~l~~~l~~l~~l----~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~~~ 212 (437)
. .+. .+.++..+ +.+..++ .+..+++|+.|++++|.+. .++..+.++++ |++|++++|.++ .+|..+
T Consensus 565 ~~~~l~-~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~ 638 (876)
T 4ecn_A 565 ASASLQ-KMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIF 638 (876)
T ss_dssp CHHHHT-TCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCCC-SCCSCC
T ss_pred Chhhhh-cCCCCCEEECCCCCcccch--hhcCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCCCC-cCchhh
Confidence 5 332 22222222 1222344 5667777777777777775 35555777777 777777777777 556554
Q ss_pred c----cCccEEEccCCcCCCCCChhc---c--CCCCCcEEEccCCCCCCCCCccc-CCCcccceeecccccCCCCCcccc
Q 013710 213 H----SNLTHVDFSGNQLKGKIPTSI---T--LLENLQHLNLSSNGLNGEIPSSI-GDLIALKNVSLASNSLSGSVPESM 282 (437)
Q Consensus 213 ~----~~L~~L~Ls~n~l~~~~~~~l---~--~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~l 282 (437)
. ++|+.|++++|.+.+.+|... . .+.+|+.|++++|.++ .+|..+ ..+++|+.|+|++|++. .+|..+
T Consensus 639 ~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~ 716 (876)
T 4ecn_A 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENS 716 (876)
T ss_dssp CTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTS
T ss_pred hccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHH
Confidence 4 237777777777765444221 1 2346777777777776 344433 35667777777777766 344332
Q ss_pred CC--------CCCCCeeeccCCcCCCcchhhhc--CCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCC
Q 013710 283 AS--------LTDMVHLDLSSNQLNGTIPRFFS--DLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNT 345 (437)
Q Consensus 283 ~~--------l~~L~~L~L~~N~l~~~~~~~l~--~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~ 345 (437)
.. +++|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|++++|+
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB
T ss_pred hccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC
Confidence 22 126777777777776 4555554 66777777777777765 56666667777777776654
No 53
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=1.8e-24 Score=217.83 Aligned_cols=256 Identities=28% Similarity=0.423 Sum_probs=136.8
Q ss_pred hhhhhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccc
Q 013710 68 KQIRALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLL 147 (437)
Q Consensus 68 ~~~~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~ 147 (437)
..+++|+.|+++++.... +.. ++++++|++|++++|.+.+. + .+.++++|++|++++|+++.+ +. + ..+.
T Consensus 65 ~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~-~--~~~~l~~L~~L~L~~n~l~~~--~~-~-~~l~ 134 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADI-T--PLANLTNLTGLTLFNNQITDI--DP-L-KNLT 134 (466)
T ss_dssp GGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCCCCC--GG-G-TTCT
T ss_pred hhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccC-h--hhcCCCCCCEEECCCCCCCCC--hH-H-cCCC
Confidence 445667777776643322 111 55566677777776666433 2 266666677777766666543 11 1 0000
Q ss_pred ccc----------------ccccCC------CCC-hhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcc
Q 013710 148 SFS----------------CIHSLH------HLS-GVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANV 204 (437)
Q Consensus 148 ~l~----------------~l~~l~------~l~-~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l 204 (437)
+++ .+..++ .+. ...+.++++|++|++++|.+... ..+..+++|++|++++|.+
T Consensus 135 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l 211 (466)
T 1o6v_A 135 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI---SVLAKLTNLESLIATNNQI 211 (466)
T ss_dssp TCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCC
T ss_pred CCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC---hhhccCCCCCEEEecCCcc
Confidence 110 011111 000 01256677777777777776543 2366677777777777777
Q ss_pred cccCCcccccCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCC
Q 013710 205 TGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMAS 284 (437)
Q Consensus 205 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~ 284 (437)
.+..+....++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+..+ +..
T Consensus 212 ~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~ 285 (466)
T 1o6v_A 212 SDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG 285 (466)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTT
T ss_pred cccccccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccC
Confidence 6554433336666666666666532 345566666666666666654322 5556666666666666653322 455
Q ss_pred CCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCC
Q 013710 285 LTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTN 346 (437)
Q Consensus 285 l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~ 346 (437)
+++|++|++++|++++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|+.
T Consensus 286 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l 343 (466)
T 1o6v_A 286 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 343 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCC
T ss_pred CCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCcc
Confidence 5555555555555554332 4455555555555555554333 34444555555555443
No 54
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.6e-26 Score=232.15 Aligned_cols=224 Identities=17% Similarity=0.158 Sum_probs=191.2
Q ss_pred CCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCE
Q 013710 92 SKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTD 171 (437)
Q Consensus 92 ~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~ 171 (437)
...+++|++|+|++|.+.+. ++..|.++++|++|+|++|.++.+ . .+..+++|++
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~----------------------~--~l~~l~~L~~ 84 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYET----------------------L--DLESLSTLRT 84 (487)
T ss_dssp STTGGGCCEEECCSSCCCCC-CGGGGTTCTTCCEEECTTSCCEEE----------------------E--ECTTCTTCCE
T ss_pred cccCCCccEEEeeCCcCCCC-CHHHHhCCCCCCEEEeeCCCCCCC----------------------c--ccccCCCCCE
Confidence 33456899999999999754 447899999999999999988542 0 1668899999
Q ss_pred EEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccccCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCC
Q 013710 172 LTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLN 251 (437)
Q Consensus 172 L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 251 (437)
|++++|.+... ...++|++|++++|.+++..+.. .++|+.|++++|.+++..+..|..+++|++|+|++|.++
T Consensus 85 L~Ls~N~l~~l------~~~~~L~~L~L~~N~l~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (487)
T 3oja_A 85 LDLNNNYVQEL------LVGPSIETLHAANNNISRVSCSR-GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157 (487)
T ss_dssp EECCSSEEEEE------EECTTCCEEECCSSCCCCEEECC-CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC
T ss_pred EEecCCcCCCC------CCCCCcCEEECcCCcCCCCCccc-cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC
Confidence 99999988532 23489999999999999765543 389999999999999888888999999999999999999
Q ss_pred CCCCcccC-CCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCc
Q 013710 252 GEIPSSIG-DLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNA 330 (437)
Q Consensus 252 ~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l 330 (437)
+..+..+. .+++|++|+|++|.+++. + ....+++|++|+|++|.+++..+ .+..+++|+.|++++|.+++ +|..+
T Consensus 158 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l 233 (487)
T 3oja_A 158 TVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKAL 233 (487)
T ss_dssp EEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTC
T ss_pred CcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhh
Confidence 87787776 789999999999999955 3 34468999999999999996554 58899999999999999995 67778
Q ss_pred ccCCCCCEEEecCCCCCCcCc
Q 013710 331 SILEKLQVFKVGGNTNLCYNH 351 (437)
Q Consensus 331 ~~l~~L~~L~l~~N~~~c~~~ 351 (437)
..+++|+.|++++|++.|++.
T Consensus 234 ~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 234 RFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp CCCTTCCEEECTTCCBCHHHH
T ss_pred ccCCCCCEEEcCCCCCcCcch
Confidence 899999999999999998765
No 55
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=8.7e-25 Score=233.44 Aligned_cols=274 Identities=20% Similarity=0.237 Sum_probs=212.0
Q ss_pred hhhhhhccccccccCCCCCc----------------cccCCCC--CCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEec
Q 013710 67 PKQIRALQSLNIPSKSACSL----------------YKCDSSK--PFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTF 128 (437)
Q Consensus 67 ~~~~~~L~~l~~~~~~~c~~----------------~~~~~~~--~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L 128 (437)
...+.+|+.|+++++..... ...+.++ ++++|++|+|++|.+.+.+| ..|.++++|++|+|
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLNI 522 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEEC
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEEC
Confidence 45667888889888654321 1456666 89999999999999988888 78999999999999
Q ss_pred ccCC-CCCCCCCchhhhc---cc---ccccc----ccCCCCCh-hhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccE
Q 013710 129 FNCP-IAPIHFPNDLSLS---LL---SFSCI----HSLHHLSG-VFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRS 196 (437)
Q Consensus 129 ~~n~-l~~i~lp~~l~~~---l~---~l~~l----~~l~~l~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~ 196 (437)
++|+ ++...+|..+... .. +++.+ +.+..++. ..+.++++|++|++++|.+. .++ .++++++|++
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~~ 599 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLE-AFGTNVKLTD 599 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC--BCC-CCCTTSEESE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc--cch-hhcCCCcceE
Confidence 9998 7531235444211 11 22222 23334544 36889999999999999997 355 7899999999
Q ss_pred EEeeCCcccccCCcccc--cC-ccEEEccCCcCCCCCChhccCCCC--CcEEEccCCCCCCCCCcc---cC--CCcccce
Q 013710 197 VTISNANVTGYIPKHLH--SN-LTHVDFSGNQLKGKIPTSITLLEN--LQHLNLSSNGLNGEIPSS---IG--DLIALKN 266 (437)
Q Consensus 197 L~L~~n~l~~~~~~~~~--~~-L~~L~Ls~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~---l~--~l~~L~~ 266 (437)
|++++|.+. .+|..+. ++ |++|++++|.++ .+|..+..+.. |+.|++++|.+.+.+|.. +. .+.+|+.
T Consensus 600 L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~ 677 (876)
T 4ecn_A 600 LKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINAST 677 (876)
T ss_dssp EECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEE
T ss_pred EECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCE
Confidence 999999999 7887776 66 999999999999 77888777654 999999999998765532 22 3458999
Q ss_pred eecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcC--------CCCCCEEeccCCcCCCCCCCCcc--cCCCC
Q 013710 267 VSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSD--------LKKLRYLNLQNNNFHGVLPFNAS--ILEKL 336 (437)
Q Consensus 267 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~--------l~~L~~L~L~~N~l~~~~~~~l~--~l~~L 336 (437)
|++++|++.......+..+++|++|+|++|++. .+|..+.. +++|++|+|++|+++ .+|..+. .+++|
T Consensus 678 L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L 755 (876)
T 4ecn_A 678 VTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL 755 (876)
T ss_dssp EECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC
T ss_pred EEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCc
Confidence 999999999443344558899999999999999 45544333 238999999999999 7788776 89999
Q ss_pred CEEEecCCCCCC
Q 013710 337 QVFKVGGNTNLC 348 (437)
Q Consensus 337 ~~L~l~~N~~~c 348 (437)
+.|++++|....
T Consensus 756 ~~L~Ls~N~L~~ 767 (876)
T 4ecn_A 756 SNMDVSYNCFSS 767 (876)
T ss_dssp CEEECCSSCCSS
T ss_pred CEEEeCCCCCCc
Confidence 999999998765
No 56
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=1.2e-24 Score=224.20 Aligned_cols=128 Identities=15% Similarity=0.073 Sum_probs=93.8
Q ss_pred hhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhcccccc
Q 013710 71 RALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFS 150 (437)
Q Consensus 71 ~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~ 150 (437)
++|+.|+++++.. .++..+.++++++|++|+|++|.+.+..+ ..|.++++|++|++++|+++.+ |.. .+.+++
T Consensus 52 ~~L~~L~Ls~N~i-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~l--p~~---~l~~L~ 124 (562)
T 3a79_B 52 PRTKALSLSQNSI-SELRMPDISFLSELRVLRLSHNRIRSLDF-HVFLFNQDLEYLDVSHNRLQNI--SCC---PMASLR 124 (562)
T ss_dssp TTCCEEECCSSCC-CCCCGGGTTTCTTCCEEECCSCCCCEECT-TTTTTCTTCCEEECTTSCCCEE--CSC---CCTTCS
T ss_pred CCcCEEECCCCCc-cccChhhhccCCCccEEECCCCCCCcCCH-HHhCCCCCCCEEECCCCcCCcc--Ccc---ccccCC
Confidence 5799999988553 35555678899999999999999975544 7899999999999999999854 554 233333
Q ss_pred cc----ccCCCCCh-hhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCc--cEEEeeCCcc--cccCC
Q 013710 151 CI----HSLHHLSG-VFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKL--RSVTISNANV--TGYIP 209 (437)
Q Consensus 151 ~l----~~l~~l~~-~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~ 209 (437)
.+ +.+..++. ..++++++|++|++++|.+... .+..+++| ++|++++|.+ ++..+
T Consensus 125 ~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~L~L~~L~L~~n~l~~~~~~~ 188 (562)
T 3a79_B 125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL----DLLPVAHLHLSCILLDLVSYHIKGGET 188 (562)
T ss_dssp EEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT----TTGGGTTSCEEEEEEEESSCCCCSSSC
T ss_pred EEECCCCCccccCchHhhcccCcccEEecCCCccccC----chhhhhhceeeEEEeecccccccccCc
Confidence 33 22333332 4688999999999999998753 23444445 9999999988 44443
No 57
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=2.3e-23 Score=209.76 Aligned_cols=260 Identities=23% Similarity=0.351 Sum_probs=189.7
Q ss_pred ChhhhhhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhc
Q 013710 66 DPKQIRALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLS 145 (437)
Q Consensus 66 ~~~~~~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~ 145 (437)
...++.+|+.|++.++... ..+.+..+++|++|+|++|.+.+. + .+.++++|++|++++|.++.+ +. + ..
T Consensus 41 ~~~~l~~l~~L~l~~~~i~---~l~~~~~l~~L~~L~Ls~n~l~~~-~--~~~~l~~L~~L~l~~n~l~~~--~~-~-~~ 110 (466)
T 1o6v_A 41 SQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSNNQLTDI-T--PLKNLTKLVDILMNNNQIADI--TP-L-AN 110 (466)
T ss_dssp CHHHHHTCCEEECCSSCCC---CCTTGGGCTTCCEEECCSSCCCCC-G--GGTTCTTCCEEECCSSCCCCC--GG-G-TT
T ss_pred ChhHhccccEEecCCCCCc---cCcchhhhcCCCEEECCCCccCCc-h--hhhccccCCEEECCCCccccC--hh-h-cC
Confidence 3456788999988764432 223466789999999999998654 3 299999999999999998765 22 1 12
Q ss_pred ccccccc----ccCCCCChhhhcCCCCCCEEEeecCCCCCCch------------------hHhhcCCcCccEEEeeCCc
Q 013710 146 LLSFSCI----HSLHHLSGVFLSRFVNLTDLTVTNVPVNASGL------------------YVIIGNMHKLRSVTISNAN 203 (437)
Q Consensus 146 l~~l~~l----~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~------------------~~~l~~l~~L~~L~L~~n~ 203 (437)
+.+++.+ +.+..+. .+.++++|++|++++|.+..... ...+.++++|++|++++|.
T Consensus 111 l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 111 LTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK 188 (466)
T ss_dssp CTTCCEEECCSSCCCCCG--GGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCCCCCCh--HHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc
Confidence 2222222 1222332 27788888888888887754311 0125566778888888887
Q ss_pred ccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccc
Q 013710 204 VTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPES 281 (437)
Q Consensus 204 l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 281 (437)
+.+. +. +. ++|++|++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..+
T Consensus 189 l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-- 260 (466)
T 1o6v_A 189 VSDI-SV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-- 260 (466)
T ss_dssp CCCC-GG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred CCCC-hh-hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--
Confidence 7643 22 22 788888888888875543 67788888888888888743 467888899999999999885543
Q ss_pred cCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCc
Q 013710 282 MASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCY 349 (437)
Q Consensus 282 l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~ 349 (437)
+..+++|++|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|+....
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~ 324 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI 324 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCC
T ss_pred hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCc
Confidence 7888999999999999986554 7889999999999999986544 78899999999999976543
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=6.5e-26 Score=216.26 Aligned_cols=221 Identities=21% Similarity=0.283 Sum_probs=151.0
Q ss_pred eeEEEccCCCCC-CcCChhhhC-------CCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhh-hcCCCC
Q 013710 98 LLSLRLSNCSDD-ISLSSTALK-------SLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVF-LSRFVN 168 (437)
Q Consensus 98 L~~L~Ls~n~~~-~~~~~~~~~-------~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~-~~~l~~ 168 (437)
|++|+|++|.+. ..++ ..+. ++++|++|++++|++++. ++..+ +..+++
T Consensus 65 L~~L~L~~n~l~~~~~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~---------------------~~~~~~~~~l~~ 122 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIP-SRILFGALRVLGISGLQELTLENLEVTGT---------------------APPPLLEATGPD 122 (312)
T ss_dssp HHHCCCCEEEEEEEECB-HHHHHHHHHHHTTSCCCEEEEEEEBCBSC---------------------CCCCSSSCCSCC
T ss_pred HhhcccccccccCCCcC-HHHHHHHHHhcCcCCccEEEccCCcccch---------------------hHHHHHHhcCCC
Confidence 666666666652 2233 2332 567777777777766431 11112 267788
Q ss_pred CCEEEeecCCCCCCchhHhhcCC-----cCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCC--CChhc--cCC
Q 013710 169 LTDLTVTNVPVNASGLYVIIGNM-----HKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGK--IPTSI--TLL 237 (437)
Q Consensus 169 L~~L~ls~n~l~~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~--~~~~l--~~l 237 (437)
|++|++++|.+... +..+..+ ++|++|++++|++.+..+..+. ++|++|++++|++.+. .+..+ ..+
T Consensus 123 L~~L~Ls~N~l~~~--~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 123 LNILNLRNVSWATR--DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp CSEEEEESCBCSSS--SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred ccEEEccCCCCcch--hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 88888888888654 3445554 7888888888888876666665 7888888888887643 22333 778
Q ss_pred CCCcEEEccCCCCCCC---CCcccCCCcccceeecccccCCCCCc-cccCCCCCCCeeeccCCcCCCcchhhhcCCCCCC
Q 013710 238 ENLQHLNLSSNGLNGE---IPSSIGDLIALKNVSLASNSLSGSVP-ESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLR 313 (437)
Q Consensus 238 ~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~ 313 (437)
++|++|++++|.+++. ....+..+++|++|++++|++++..+ ..+..+++|++|+|++|+++ .+|..+. ++|+
T Consensus 201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~ 277 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLS 277 (312)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEE
T ss_pred CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCce
Confidence 8888888888888721 11233466788888888888886553 44566788888888888887 5565554 7888
Q ss_pred EEeccCCcCCCCCCCCcccCCCCCEEEecCCCCC
Q 013710 314 YLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNL 347 (437)
Q Consensus 314 ~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~ 347 (437)
+|++++|++++. |. +..+++|++|++++|++.
T Consensus 278 ~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 278 VLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp EEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred EEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 888888888865 54 777888888888888764
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=9.3e-26 Score=228.14 Aligned_cols=243 Identities=21% Similarity=0.211 Sum_probs=202.8
Q ss_pred hhhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccc
Q 013710 70 IRALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSF 149 (437)
Q Consensus 70 ~~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l 149 (437)
.++|+.|+++++... ++..+.++++++|++|+|++|.+.+..+ |..+++|++|+|++|.++.+
T Consensus 33 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l------------- 95 (487)
T 3oja_A 33 AWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQEL------------- 95 (487)
T ss_dssp GGGCCEEECCSSCCC-CCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEE-------------
T ss_pred CCCccEEEeeCCcCC-CCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCC-------------
Confidence 347999999885433 4555678889999999999999875543 99999999999999987643
Q ss_pred cccccCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCC
Q 013710 150 SCIHSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLK 227 (437)
Q Consensus 150 ~~l~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~ 227 (437)
...++|++|++++|.+.... ...+++|++|++++|.+++..+..+. ++|++|++++|.++
T Consensus 96 --------------~~~~~L~~L~L~~N~l~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (487)
T 3oja_A 96 --------------LVGPSIETLHAANNNISRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157 (487)
T ss_dssp --------------EECTTCCEEECCSSCCCCEE----ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC
T ss_pred --------------CCCCCcCEEECcCCcCCCCC----ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC
Confidence 12379999999999997542 23568999999999999987777765 89999999999999
Q ss_pred CCCChhcc-CCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhh
Q 013710 228 GKIPTSIT-LLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFF 306 (437)
Q Consensus 228 ~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l 306 (437)
+..+..+. .+++|++|+|++|.+++. ..+..+++|+.|+|++|.+++. +..+..+++|++|+|++|.+++ +|..+
T Consensus 158 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l 233 (487)
T 3oja_A 158 TVNFAELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKAL 233 (487)
T ss_dssp EEEGGGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTC
T ss_pred CcChHHHhhhCCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhh
Confidence 87887776 799999999999999855 3345689999999999999964 4458899999999999999994 67789
Q ss_pred cCCCCCCEEeccCCcCC-CCCCCCcccCCCCCEEEec-------CCCCCCcCc
Q 013710 307 SDLKKLRYLNLQNNNFH-GVLPFNASILEKLQVFKVG-------GNTNLCYNH 351 (437)
Q Consensus 307 ~~l~~L~~L~L~~N~l~-~~~~~~l~~l~~L~~L~l~-------~N~~~c~~~ 351 (437)
..+++|+.|++++|.+. +.+|..+..++.|+.+++. +|++.|.+.
T Consensus 234 ~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp CCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred ccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCC
Confidence 99999999999999998 5666677778888888886 888888775
No 60
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=1.1e-23 Score=211.06 Aligned_cols=152 Identities=19% Similarity=0.199 Sum_probs=67.9
Q ss_pred hcCCcCccEEEeeCCcccccCCcccccCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCccccee
Q 013710 188 IGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNV 267 (437)
Q Consensus 188 l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 267 (437)
+..+++|++|++++|++++ ++..-.++|++|++++|.+++. .+..+++|++|++++|++++ +| +..+++|+.|
T Consensus 166 ~~~l~~L~~L~ls~n~l~~-l~l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L 238 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITE-LDVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYF 238 (457)
T ss_dssp CTTCTTCCEEECCSSCCCC-CCCTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEE
T ss_pred cccCCcCCEEECCCCccce-eccccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEE
Confidence 3344444455555444443 2211114455555555554432 24444555555555555543 22 4445555555
Q ss_pred ecccccCCCCCccccCCCC-------CCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCC--------Cccc
Q 013710 268 SLASNSLSGSVPESMASLT-------DMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPF--------NASI 332 (437)
Q Consensus 268 ~L~~n~l~~~~~~~l~~l~-------~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~--------~l~~ 332 (437)
++++|++++..+..+.++. +|++|++++|.+.+.+| +..+++|++|++++|...+.+|. .+..
T Consensus 239 ~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~ 316 (457)
T 3bz5_A 239 DCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ 316 (457)
T ss_dssp ECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT
T ss_pred EeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhh
Confidence 5555555443322222222 23333344443333333 23445566666666654333221 1334
Q ss_pred CCCCCEEEecCCCCCC
Q 013710 333 LEKLQVFKVGGNTNLC 348 (437)
Q Consensus 333 l~~L~~L~l~~N~~~c 348 (437)
+++|+.|++++|....
T Consensus 317 ~~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 317 NPKLVYLYLNNTELTE 332 (457)
T ss_dssp CTTCCEEECTTCCCSC
T ss_pred cccCCEEECCCCcccc
Confidence 4556666666665443
No 61
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=3.4e-24 Score=200.21 Aligned_cols=205 Identities=21% Similarity=0.245 Sum_probs=128.1
Q ss_pred CCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCEEE
Q 013710 94 PFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDLT 173 (437)
Q Consensus 94 ~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L~ 173 (437)
.+++|++|++++|.+.. + ..+..+++|++|++++|+++.+ ..+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~-~--~~l~~l~~L~~L~l~~n~l~~~------------------------~~l~~l~~L~~L~ 91 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKS-V--QGIQYLPNVRYLALGGNKLHDI------------------------SALKELTNLTYLI 91 (272)
T ss_dssp HHTTCCEEECTTSCCCC-C--TTGGGCTTCCEEECTTSCCCCC------------------------GGGTTCTTCCEEE
T ss_pred cccceeeeeeCCCCccc-c--cccccCCCCcEEECCCCCCCCc------------------------hhhcCCCCCCEEE
Confidence 45677778887777642 2 2477777788888877776542 1244666777777
Q ss_pred eecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCC
Q 013710 174 VTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLN 251 (437)
Q Consensus 174 ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 251 (437)
+++|.+... .+..+.++++|++|++++|++++..+..+. ++|++|++++|.+++..+..|..+++|++|++++|.++
T Consensus 92 L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 92 LTGNQLQSL-PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp CTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCccCcc-ChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC
Confidence 777766533 333456667777777777776654444333 56666666666666555555666666666666666666
Q ss_pred CCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcc
Q 013710 252 GEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNAS 331 (437)
Q Consensus 252 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 331 (437)
+..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+. +++|++|++.+|.++|.+|..++
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 171 SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccc
Confidence 55555556666666666666666655555566666666666666665532 34566666666666666665544
Q ss_pred cC
Q 013710 332 IL 333 (437)
Q Consensus 332 ~l 333 (437)
.+
T Consensus 244 ~~ 245 (272)
T 3rfs_A 244 SV 245 (272)
T ss_dssp CB
T ss_pred cc
Confidence 33
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=1.3e-24 Score=210.75 Aligned_cols=232 Identities=13% Similarity=0.079 Sum_probs=189.3
Q ss_pred CCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCEEEee
Q 013710 96 SHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTVT 175 (437)
Q Consensus 96 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L~ls 175 (437)
++|++|++++|++.+ ++...|.++++|++|++++|+++.+ ....+.++++|++|+++
T Consensus 52 ~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~----------------------~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 52 EAVKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSNGINTI----------------------EEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCEE----------------------CTTTTTTCTTCCEEECC
T ss_pred ccCcEEECCCCcCcc-cCHHHhccCCCCCEEECCCCccCcc----------------------CHhhcCCCCCCCEEECC
Confidence 589999999999864 5556899999999999999988643 22346789999999999
Q ss_pred cCCCCCCchhHhhcCCcCccEEEeeCCcccccCC-cccc--cCccEEEccCC-cCCCCCChhccCCCCCcEEEccCCCCC
Q 013710 176 NVPVNASGLYVIIGNMHKLRSVTISNANVTGYIP-KHLH--SNLTHVDFSGN-QLKGKIPTSITLLENLQHLNLSSNGLN 251 (437)
Q Consensus 176 ~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~--~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~ 251 (437)
+|.+... ....+.++++|++|++++|++++... ..+. ++|++|++++| .+.+..+..|.++++|++|++++|.++
T Consensus 109 ~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 109 YNYLSNL-SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp SSCCSSC-CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCcCCcC-CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 9999754 44558999999999999999985433 2443 89999999999 477666788999999999999999999
Q ss_pred CCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhh---cCCCCCCEEeccCCcCCC----
Q 013710 252 GEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFF---SDLKKLRYLNLQNNNFHG---- 324 (437)
Q Consensus 252 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l---~~l~~L~~L~L~~N~l~~---- 324 (437)
+..+..+..+++|++|++++|++.......+..+++|++|++++|++++..+..+ .....++.++++++.+++
T Consensus 188 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~ 267 (353)
T 2z80_A 188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267 (353)
T ss_dssp EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH
T ss_pred ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchh
Confidence 8888999999999999999999974444445568999999999999987554433 345678899999998875
Q ss_pred CCCCCcccCCCCCEEEecCCCCCCcCc
Q 013710 325 VLPFNASILEKLQVFKVGGNTNLCYNH 351 (437)
Q Consensus 325 ~~~~~l~~l~~L~~L~l~~N~~~c~~~ 351 (437)
.+|..+..+++|+.|++++|.......
T Consensus 268 ~l~~~l~~l~~L~~L~Ls~N~l~~i~~ 294 (353)
T 2z80_A 268 QVMKLLNQISGLLELEFSRNQLKSVPD 294 (353)
T ss_dssp HHHHHHHTCTTCCEEECCSSCCCCCCT
T ss_pred hhHHHHhcccCCCEEECCCCCCCccCH
Confidence 356677889999999999998764433
No 63
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=4.2e-23 Score=206.97 Aligned_cols=174 Identities=21% Similarity=0.178 Sum_probs=139.9
Q ss_pred hhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccccCccEEEccCCcCCCCCChhccCCCCCc
Q 013710 162 FLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQ 241 (437)
Q Consensus 162 ~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 241 (437)
.+..+++|++|++++|.+... + +..+++|++|++++|++++. +-.-.++|++|++++|++++ +| +..+++|+
T Consensus 165 ~~~~l~~L~~L~ls~n~l~~l--~--l~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~ 236 (457)
T 3bz5_A 165 DVTPQTQLTTLDCSFNKITEL--D--VSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLT 236 (457)
T ss_dssp CCTTCTTCCEEECCSSCCCCC--C--CTTCTTCCEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCS
T ss_pred ccccCCcCCEEECCCCcccee--c--cccCCCCCEEECcCCcCCee-ccccCCCCCEEECcCCcccc-cC--ccccCCCC
Confidence 467889999999999998753 2 78899999999999999965 32222899999999999996 55 88999999
Q ss_pred EEEccCCCCCCCCCcccCCCc-------ccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchh--------hh
Q 013710 242 HLNLSSNGLNGEIPSSIGDLI-------ALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPR--------FF 306 (437)
Q Consensus 242 ~L~L~~n~l~~~~~~~l~~l~-------~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~--------~l 306 (437)
+|++++|.+++..+..+..+. +|+.|++++|.+.+.+| +..+++|++|++++|...+.+|. .+
T Consensus 237 ~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l 314 (457)
T 3bz5_A 237 YFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDL 314 (457)
T ss_dssp EEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCC
T ss_pred EEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEech
Confidence 999999999976555555544 55677777777665555 56789999999999987665553 25
Q ss_pred cCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCC
Q 013710 307 SDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLC 348 (437)
Q Consensus 307 ~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c 348 (437)
.++++|++|++++|++++. + +..+++|+.|++++|+..-
T Consensus 315 ~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 315 SQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp TTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred hhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence 5678999999999999974 3 7889999999999998653
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=5.3e-24 Score=199.28 Aligned_cols=206 Identities=21% Similarity=0.261 Sum_probs=173.5
Q ss_pred CCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCEEEee
Q 013710 96 SHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTVT 175 (437)
Q Consensus 96 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L~ls 175 (437)
++|++|+|++|++.+. +...|.++++|++|++++|+++.+ ....+.++++|++|+++
T Consensus 28 ~~l~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~----------------------~~~~~~~l~~L~~L~L~ 84 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTI----------------------EDGAYQSLSHLSTLILT 84 (276)
T ss_dssp TTCCEEECTTCCCCEE-CTTTTTTCTTCSEEECTTCCCCEE----------------------CTTTTTTCTTCCEEECT
T ss_pred CCccEEECCCCccccc-CHhHhccccCCcEEECCCCcCCcc----------------------CHHHccCCcCCCEEECC
Confidence 4799999999998654 446899999999999999988643 22356789999999999
Q ss_pred cCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCC-CChhccCCCCCcEEEccCCCCCC
Q 013710 176 NVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGK-IPTSITLLENLQHLNLSSNGLNG 252 (437)
Q Consensus 176 ~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~ 252 (437)
+|.+... .+..+.++++|++|++++|.+.+..+..+. ++|++|++++|.+++. +|..|..+++|++|++++|.+++
T Consensus 85 ~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 85 GNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCccCcc-ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 9998654 445688999999999999999976665555 8999999999999864 58899999999999999999997
Q ss_pred CCCcccCCCcccc----eeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCC
Q 013710 253 EIPSSIGDLIALK----NVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVL 326 (437)
Q Consensus 253 ~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 326 (437)
..+..+..+.+|+ .|++++|.+.+..+..+. ..+|++|+|++|++++..+..+..+++|++|++++|++++..
T Consensus 164 ~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp ECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred CCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 7777888887777 899999999965555444 458999999999999877777899999999999999998543
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=9.4e-26 Score=215.64 Aligned_cols=237 Identities=21% Similarity=0.208 Sum_probs=192.9
Q ss_pred hhhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccc
Q 013710 70 IRALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSF 149 (437)
Q Consensus 70 ~~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l 149 (437)
+++|+.|+++++... .+..+.++++++|++|+|++|.+.+.. .|.++++|++|++++|+++.+
T Consensus 33 ~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~l~~L~~L~Ls~n~l~~l------------- 95 (317)
T 3o53_A 33 AWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETL---DLESLSTLRTLDLNNNYVQEL------------- 95 (317)
T ss_dssp GGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEE---EETTCTTCCEEECCSSEEEEE-------------
T ss_pred CCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcch---hhhhcCCCCEEECcCCccccc-------------
Confidence 357899999885432 344456678899999999999986543 399999999999999987543
Q ss_pred cccccCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCC
Q 013710 150 SCIHSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLK 227 (437)
Q Consensus 150 ~~l~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~ 227 (437)
...++|++|++++|.+.... ...+++|++|++++|++++..+..+. ++|++|++++|.++
T Consensus 96 --------------~~~~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 96 --------------LVGPSIETLHAANNNISRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp --------------EECTTCCEEECCSSCCSEEE----ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred --------------cCCCCcCEEECCCCccCCcC----ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence 13479999999999986542 33468899999999999976666665 89999999999999
Q ss_pred CCCChhc-cCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhh
Q 013710 228 GKIPTSI-TLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFF 306 (437)
Q Consensus 228 ~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l 306 (437)
+..+..+ ..+++|++|++++|.+++. + ....+++|++|++++|++++ ++..+..+++|++|+|++|+++ .+|..+
T Consensus 158 ~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~ 233 (317)
T 3o53_A 158 TVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKAL 233 (317)
T ss_dssp EEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTC
T ss_pred cccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHh
Confidence 7766666 4789999999999999854 3 34458999999999999995 4555888999999999999998 567788
Q ss_pred cCCCCCCEEeccCCcCC-CCCCCCcccCCCCCEEEecCCC
Q 013710 307 SDLKKLRYLNLQNNNFH-GVLPFNASILEKLQVFKVGGNT 345 (437)
Q Consensus 307 ~~l~~L~~L~L~~N~l~-~~~~~~l~~l~~L~~L~l~~N~ 345 (437)
..+++|++|++++|.++ +..+..+..+++|+.+++++|+
T Consensus 234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 99999999999999998 6677778888888888888543
No 66
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.5e-23 Score=195.81 Aligned_cols=184 Identities=24% Similarity=0.276 Sum_probs=166.0
Q ss_pred hcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCC
Q 013710 163 LSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENL 240 (437)
Q Consensus 163 ~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L 240 (437)
...+++|+.|++++|.+... ..+..+++|++|++++|.+.+. + .+. ++|++|++++|.+++..+..|..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~---~~l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV---QGIQYLPNVRYLALGGNKLHDI-S-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC---TTGGGCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccccceeeeeeCCCCcccc---cccccCCCCcEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 45788999999999998643 3478899999999999999863 3 343 899999999999998888889999999
Q ss_pred cEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCC
Q 013710 241 QHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNN 320 (437)
Q Consensus 241 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N 320 (437)
++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 99999999999877777899999999999999999777777899999999999999999888888899999999999999
Q ss_pred cCCCCCCCCcccCCCCCEEEecCCCCCCcCc
Q 013710 321 NFHGVLPFNASILEKLQVFKVGGNTNLCYNH 351 (437)
Q Consensus 321 ~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~ 351 (437)
++++..+..+..+++|+.|++++|++.|.|+
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 222 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence 9998888888999999999999999999987
No 67
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.91 E-value=2.8e-24 Score=194.32 Aligned_cols=199 Identities=21% Similarity=0.286 Sum_probs=168.7
Q ss_pred cEEEeeCCcccccCCcccccCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccC
Q 013710 195 RSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSL 274 (437)
Q Consensus 195 ~~L~L~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 274 (437)
+.+++++++++ .+|..+.+++++|++++|++++..+..|..+++|++|+|++|.+++..+..|.++++|++|+|++|++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCS-SCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcC-cCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 57888888888 67777778999999999999977777899999999999999999988889999999999999999999
Q ss_pred CCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCc-cc
Q 013710 275 SGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNH-TV 353 (437)
Q Consensus 275 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~-~~ 353 (437)
+...+..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|+|.|+|. .|
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~ 172 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKW 172 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGHH
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccHH
Confidence 96666678999999999999999999889999999999999999999998888888999999999999999999998 44
Q ss_pred ccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013710 354 LSSKLKLGIAPCDKHGLPISPPPAKDNSSDDSENDSSDDDDSD 396 (437)
Q Consensus 354 ~~~~~~~~~~~c~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 396 (437)
+..|.... .-......|..|....+....+...++..|...
T Consensus 173 l~~~l~~~--~~~~~~~~C~~P~~l~g~~l~~l~~~~~~c~~~ 213 (220)
T 2v9t_B 173 LADYLHTN--PIETSGARCTSPRRLANKRIGQIKSKKFRCSAA 213 (220)
T ss_dssp HHHHHHHC--CCBCSCCBEEESGGGTTCBGGGSCGGGCCC---
T ss_pred HHHHHHhC--CCCccCCCcCCchHHcCCchhhCCHHHCcCccc
Confidence 44443321 122345667888888888877777777777543
No 68
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=1.9e-23 Score=192.72 Aligned_cols=188 Identities=21% Similarity=0.231 Sum_probs=163.6
Q ss_pred CCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCcEEE
Q 013710 167 VNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLN 244 (437)
Q Consensus 167 ~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 244 (437)
.+.++++++++.+.. ++..+. +++++|++++|++.+..+..+. ++|++|++++|.+++..+..|..+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~~--~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLDS--VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCSS--CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCccc--cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 356788999888864 333333 5899999999999987776666 8999999999999988888899999999999
Q ss_pred ccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCC
Q 013710 245 LSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHG 324 (437)
Q Consensus 245 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 324 (437)
+++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|+|++|++++..+..|..+++|++|+|++|++++
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 169 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence 99999998777888999999999999999997777778999999999999999998877789999999999999999998
Q ss_pred CCCCCcccCCCCCEEEecCCCCCCc-Cc-ccccccc
Q 013710 325 VLPFNASILEKLQVFKVGGNTNLCY-NH-TVLSSKL 358 (437)
Q Consensus 325 ~~~~~l~~l~~L~~L~l~~N~~~c~-~~-~~~~~~~ 358 (437)
..+..+..+++|+.|++++|++.|+ |. .++..|.
T Consensus 170 ~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l~~~~ 205 (251)
T 3m19_A 170 VPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWI 205 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSCCBCTTSTTHHHHHHHH
T ss_pred cCHHHHhCCCCCCEEEeeCCceeCCccccHHHHHHH
Confidence 8887889999999999999999998 55 3344443
No 69
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.90 E-value=6.3e-23 Score=213.73 Aligned_cols=132 Identities=20% Similarity=0.271 Sum_probs=107.2
Q ss_pred hccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccc
Q 013710 72 ALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSC 151 (437)
Q Consensus 72 ~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~ 151 (437)
.++.||++++.. ..+.-+.|+++++|++|+|++|++. .+++.+|.++++|++|+|++|+++.+ |......+.+|+.
T Consensus 53 ~~~~LdLs~N~i-~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l--~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 53 STKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSL--ALGAFSGLSSLQK 128 (635)
T ss_dssp TCCEEECTTSCC-CEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEE--CGGGGTTCTTCCE
T ss_pred CCCEEEeeCCCC-CCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCC--CHHHhcCCCCCCE
Confidence 589999998653 4666778999999999999999986 45557899999999999999999765 6655445555554
Q ss_pred c----ccCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCccccc
Q 013710 152 I----HSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGY 207 (437)
Q Consensus 152 l----~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~ 207 (437)
+ +.+..+....++++++|++|++++|.+.....+..+..+++|++|++++|++++.
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence 4 2455666677899999999999999998766777889999999999999987654
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=3.4e-24 Score=204.36 Aligned_cols=208 Identities=21% Similarity=0.176 Sum_probs=167.3
Q ss_pred CCCCeeEEEccCCCCCCcCChhhh-CCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCEE
Q 013710 94 PFSHLLSLRLSNCSDDISLSSTAL-KSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDL 172 (437)
Q Consensus 94 ~l~~L~~L~Ls~n~~~~~~~~~~~-~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L 172 (437)
++++|++|+|++|.+.+.++...| .++++|++|++++|+++.+ |..+. ......+++|++|
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~--~~~~~----------------~l~~~~~~~L~~L 154 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR--DAWLA----------------ELQQWLKPGLKVL 154 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS--SSHHH----------------HHHTTCCTTCCEE
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch--hHHHH----------------HHHHhhcCCCcEE
Confidence 478999999999999877774333 8999999999999999764 43221 0001124899999
Q ss_pred EeecCCCCCCchhHhhcCCcCccEEEeeCCcccccC--Cccc--c--cCccEEEccCCcCCCC---CChhccCCCCCcEE
Q 013710 173 TVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYI--PKHL--H--SNLTHVDFSGNQLKGK---IPTSITLLENLQHL 243 (437)
Q Consensus 173 ~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~~~~--~--~~L~~L~Ls~n~l~~~---~~~~l~~l~~L~~L 243 (437)
++++|.+... .+..++++++|++|++++|++.+.. +..+ . ++|++|++++|++++. ....+..+++|++|
T Consensus 155 ~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L 233 (312)
T 1wwl_A 155 SIAQAHSLNF-SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233 (312)
T ss_dssp EEESCSCCCC-CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEE
T ss_pred EeeCCCCccc-hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEE
Confidence 9999999754 4467899999999999999987642 2233 2 8999999999999832 22345688999999
Q ss_pred EccCCCCCCCCC-cccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcC
Q 013710 244 NLSSNGLNGEIP-SSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNF 322 (437)
Q Consensus 244 ~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l 322 (437)
++++|.+++..+ ..+..+++|++|++++|+++ .+|..+. ++|++|+|++|++++. |. +..+++|++|++++|++
T Consensus 234 ~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp ECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTT
T ss_pred ECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCC
Confidence 999999997664 45677899999999999999 6777666 8999999999999966 55 88999999999999999
Q ss_pred CCC
Q 013710 323 HGV 325 (437)
Q Consensus 323 ~~~ 325 (437)
++.
T Consensus 309 ~~~ 311 (312)
T 1wwl_A 309 LDS 311 (312)
T ss_dssp TCC
T ss_pred CCC
Confidence 853
No 71
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.90 E-value=8.8e-24 Score=191.05 Aligned_cols=199 Identities=19% Similarity=0.170 Sum_probs=164.7
Q ss_pred ccEEEeeCCcccccCCcccccCccEEEccCCcCCCCCC-hhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccc
Q 013710 194 LRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIP-TSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASN 272 (437)
Q Consensus 194 L~~L~L~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 272 (437)
-+++++++|.++ .+|..+...+++|++++|++++..+ ..|..+++|++|+|++|.+++..+..|..+++|++|++++|
T Consensus 13 ~~~l~~s~n~l~-~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TTEEECCSSCCS-SCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CCEeEeCCCCcc-cCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 358899999988 5787777888999999999987644 46889999999999999999777778999999999999999
Q ss_pred cCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCc-
Q 013710 273 SLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNH- 351 (437)
Q Consensus 273 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~- 351 (437)
++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..|..+..+++|+.|++++|++.|+|+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 9998888889999999999999999998889999999999999999999998889999999999999999999999998
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013710 352 TVLSSKLKLGIAPCDKHGLPISPPPAKDNSSDDSENDSSDDDDS 395 (437)
Q Consensus 352 ~~~~~~~~~~~~~c~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 395 (437)
.++..|...... ......|..|....+....+.......|..
T Consensus 172 ~~l~~~~~~~~~--~~~~~~C~~P~~l~g~~l~~l~~~~~~~~~ 213 (220)
T 2v70_A 172 AWLGEWLRKKRI--VTGNPRCQKPYFLKEIPIQDVAIQDFTCDD 213 (220)
T ss_dssp HHHHHHHHHSCC--BCCCCEEEESGGGTTEEGGGSCGGGCCCCC
T ss_pred HHHHHHHHhcCc--cccCCccCCChHHCCCChhhCCHHHccccc
Confidence 444444432111 122345667777666666555555554443
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1.1e-22 Score=191.85 Aligned_cols=201 Identities=23% Similarity=0.229 Sum_probs=167.2
Q ss_pred CCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCEE
Q 013710 93 KPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDL 172 (437)
Q Consensus 93 ~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L 172 (437)
++++++++++++++++. .+|. .+ .+++++|++++|+++.+ ....+..+++|++|
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~-~~--~~~l~~L~L~~N~l~~~----------------------~~~~~~~l~~L~~L 60 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPP-DL--PKDTTILHLSENLLYTF----------------------SLATLMPYTRLTQL 60 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCS-CC--CTTCCEEECTTSCCSEE----------------------EGGGGTTCTTCCEE
T ss_pred cccCCccEEECCCCCCC-cCCC-CC--CCCCCEEEcCCCcCCcc----------------------CHHHhhcCCCCCEE
Confidence 34578999999998885 5552 33 26899999999988643 22357788999999
Q ss_pred EeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCC
Q 013710 173 TVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGL 250 (437)
Q Consensus 173 ~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 250 (437)
++++|.+... +. ...+++|++|++++|+++ .+|..+. ++|++|++++|++++..+..|.++++|++|+|++|++
T Consensus 61 ~L~~n~l~~~--~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l 136 (290)
T 1p9a_G 61 NLDRAELTKL--QV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136 (290)
T ss_dssp ECTTSCCCEE--EC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC
T ss_pred ECCCCccCcc--cC-CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCC
Confidence 9999998643 22 378899999999999998 5666554 8999999999999977778899999999999999999
Q ss_pred CCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCC
Q 013710 251 NGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHG 324 (437)
Q Consensus 251 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 324 (437)
++..+..|..+++|+.|++++|+++...+..+..+++|++|+|++|+++ .+|..+....+|++|++++|.+..
T Consensus 137 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 9777777889999999999999999666667788999999999999998 667777788899999999998873
No 73
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=2.8e-24 Score=211.09 Aligned_cols=248 Identities=15% Similarity=0.172 Sum_probs=192.9
Q ss_pred CCCCCCCeeEEEccCCCCCCcCC---hhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCC
Q 013710 91 SSKPFSHLLSLRLSNCSDDISLS---STALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFV 167 (437)
Q Consensus 91 ~~~~l~~L~~L~Ls~n~~~~~~~---~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~ 167 (437)
.+..+++|++|+|++|.+....+ ...+.++++|++|+|++|.+..+ ...++..+..+ ...+..++
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l--~~~~~~~~~~l----------~~~l~~~~ 94 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRV--KDEIPEALRLL----------LQALLKCP 94 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSC--GGGSHHHHHHH----------HHHHTTCT
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCcc--ccchhHHHHHH----------HHHHhhCC
Confidence 34456789999999998865422 13477899999999999876543 11111111000 12357889
Q ss_pred CCCEEEeecCCCCCCc---hhHhhcCCcCccEEEeeCCcccccCCcccc---------------cCccEEEccCCcCC-C
Q 013710 168 NLTDLTVTNVPVNASG---LYVIIGNMHKLRSVTISNANVTGYIPKHLH---------------SNLTHVDFSGNQLK-G 228 (437)
Q Consensus 168 ~L~~L~ls~n~l~~~~---~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~---------------~~L~~L~Ls~n~l~-~ 228 (437)
+|++|++++|.+...+ ++..+..+++|++|+|++|.+++..+..+. ++|++|++++|+++ .
T Consensus 95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~ 174 (386)
T 2ca6_A 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG 174 (386)
T ss_dssp TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH
Confidence 9999999999998653 566788999999999999999755444333 59999999999997 3
Q ss_pred CCC---hhccCCCCCcEEEccCCCCCC-----CCCcccCCCcccceeecccccCC----CCCccccCCCCCCCeeeccCC
Q 013710 229 KIP---TSITLLENLQHLNLSSNGLNG-----EIPSSIGDLIALKNVSLASNSLS----GSVPESMASLTDMVHLDLSSN 296 (437)
Q Consensus 229 ~~~---~~l~~l~~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~N 296 (437)
..+ ..+..+++|++|++++|.++. ..+..+..+++|++|+|++|.++ ..++..+..+++|++|+|++|
T Consensus 175 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n 254 (386)
T 2ca6_A 175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254 (386)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC
Confidence 344 467788999999999999972 23337888999999999999996 457788889999999999999
Q ss_pred cCCCc----chhhhcC--CCCCCEEeccCCcCCC----CCCCCc-ccCCCCCEEEecCCCCCCcC
Q 013710 297 QLNGT----IPRFFSD--LKKLRYLNLQNNNFHG----VLPFNA-SILEKLQVFKVGGNTNLCYN 350 (437)
Q Consensus 297 ~l~~~----~~~~l~~--l~~L~~L~L~~N~l~~----~~~~~l-~~l~~L~~L~l~~N~~~c~~ 350 (437)
.+++. ++..+.. +++|++|+|++|.+++ .++..+ ..+++|+.|++++|+.....
T Consensus 255 ~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 99865 4566643 8999999999999997 366666 56899999999999988766
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=5.1e-22 Score=185.21 Aligned_cols=183 Identities=26% Similarity=0.318 Sum_probs=129.3
Q ss_pred CCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCEEEee
Q 013710 96 SHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTVT 175 (437)
Q Consensus 96 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L~ls 175 (437)
+++++|+|++|++. .++...|.++++|++|++++|+++.+ ....+..+++|++|+++
T Consensus 37 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i----------------------~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 37 ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTL----------------------PAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCC----------------------CTTTTSSCTTCCEEECC
T ss_pred CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCee----------------------ChhhhcCCCCCCEEECC
Confidence 57999999999986 45557899999999999999988643 22234455666666666
Q ss_pred cCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccccCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCC
Q 013710 176 NVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIP 255 (437)
Q Consensus 176 ~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 255 (437)
+|.+... .+..+.++++ |++|++++|.+++..+..|..+++|++|++++|.+++..+
T Consensus 94 ~n~l~~~-~~~~~~~l~~----------------------L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 150 (270)
T 2o6q_A 94 DNKLQAL-PIGVFDQLVN----------------------LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK 150 (270)
T ss_dssp SSCCCCC-CTTTTTTCSS----------------------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCcCCcC-CHhHcccccC----------------------CCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH
Confidence 6655432 2223444444 4555555555554555566777778888888887776555
Q ss_pred cccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCC
Q 013710 256 SSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHG 324 (437)
Q Consensus 256 ~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 324 (437)
..|..+++|++|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|++|++++|.+..
T Consensus 151 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 567777888888888888776666667778888888888888886666667778888888888887764
No 75
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=2.5e-22 Score=191.03 Aligned_cols=190 Identities=20% Similarity=0.363 Sum_probs=115.6
Q ss_pred CCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCEEE
Q 013710 94 PFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDLT 173 (437)
Q Consensus 94 ~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L~ 173 (437)
.+++|++|++++|.+.. ++ .+..+++|++|++++|+++.+ .. +..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~--~~~~l~~L~~L~L~~n~i~~~----------------------~~--~~~l~~L~~L~ 91 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE--GVQYLNNLIGLELKDNQITDL----------------------AP--LKNLTKITELE 91 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT--TGGGCTTCCEEECCSSCCCCC----------------------GG--GTTCCSCCEEE
T ss_pred HcCCcCEEEeeCCCccC-ch--hhhccCCCCEEEccCCcCCCC----------------------hh--HccCCCCCEEE
Confidence 35678888888887753 33 577788888888888877543 11 45667777777
Q ss_pred eecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCC
Q 013710 174 VTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLN 251 (437)
Q Consensus 174 ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 251 (437)
+++|.+... ..+..+++|++|++++|++++. +. +. ++|++|++++|.+++..+ +..+++|++|++++|.++
T Consensus 92 L~~n~l~~~---~~~~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 92 LSGNPLKNV---SAIAGLQSIKTLDLTSTQITDV-TP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp CCSCCCSCC---GGGTTCTTCCEEECTTSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred ccCCcCCCc---hhhcCCCCCCEEECCCCCCCCc-hh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence 777776543 2466677777777777776643 22 22 566666666666653322 556666666666666665
Q ss_pred CCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCC
Q 013710 252 GEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFH 323 (437)
Q Consensus 252 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 323 (437)
+. +. +..+++|+.|++++|++++..+ +..+++|++|+|++|++++..+ +..+++|++|++++|+++
T Consensus 165 ~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 165 DL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred CC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 32 22 5556666666666666653322 5555666666666666654332 555666666666666655
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.9e-22 Score=192.08 Aligned_cols=224 Identities=21% Similarity=0.275 Sum_probs=172.0
Q ss_pred CeeEEEccCCCCCCcCCh--hhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhh-cCCCCCCEEE
Q 013710 97 HLLSLRLSNCSDDISLSS--TALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFL-SRFVNLTDLT 173 (437)
Q Consensus 97 ~L~~L~Ls~n~~~~~~~~--~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~-~~l~~L~~L~ 173 (437)
.++.|++.++.+....-. ..+..+++|++|++++|+++.. .|. ..+ ..+++|++|+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~--------------------~~~~~~~~~L~~L~ 123 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGT-MPP--------------------LPLEATGLALSSLR 123 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSC-CCC--------------------CSSSCCCBCCSSCE
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccc-hhh--------------------hhhhccCCCCCEEE
Confidence 578899998877432110 1233457799999999988642 111 112 6889999999
Q ss_pred eecCCCCCCch---hHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCC--C--ChhccCCCCCcEEE
Q 013710 174 VTNVPVNASGL---YVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGK--I--PTSITLLENLQHLN 244 (437)
Q Consensus 174 ls~n~l~~~~~---~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~--~--~~~l~~l~~L~~L~ 244 (437)
+++|.+..... ...+..+++|++|++++|++.+..+..+. ++|++|++++|++.+. + ...+..+++|++|+
T Consensus 124 Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~ 203 (310)
T 4glp_A 124 LRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLA 203 (310)
T ss_dssp EESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCB
T ss_pred eecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEE
Confidence 99999975321 23456789999999999999877777765 8999999999997642 1 22346889999999
Q ss_pred ccCCCCCCCCCc----ccCCCcccceeecccccCCCCCccccCCC---CCCCeeeccCCcCCCcchhhhcCCCCCCEEec
Q 013710 245 LSSNGLNGEIPS----SIGDLIALKNVSLASNSLSGSVPESMASL---TDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNL 317 (437)
Q Consensus 245 L~~n~l~~~~~~----~l~~l~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 317 (437)
+++|+++ .++. .+..+++|++|++++|++++..|..+..+ ++|++|+|++|+++ .+|..+. ++|++|++
T Consensus 204 Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~L 279 (310)
T 4glp_A 204 LRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDL 279 (310)
T ss_dssp CCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEEC
T ss_pred CCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEEC
Confidence 9999997 3333 25678999999999999997777777666 69999999999999 5566553 79999999
Q ss_pred cCCcCCCCCCCCcccCCCCCEEEecCCCCC
Q 013710 318 QNNNFHGVLPFNASILEKLQVFKVGGNTNL 347 (437)
Q Consensus 318 ~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~ 347 (437)
++|++++. |. +..+++|+.|++++|++.
T Consensus 280 s~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 280 SSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 99999964 33 577899999999999865
No 77
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.4e-22 Score=192.85 Aligned_cols=204 Identities=21% Similarity=0.215 Sum_probs=164.5
Q ss_pred CCCeeEEEccCCCCCCcCChhhh--CCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCEE
Q 013710 95 FSHLLSLRLSNCSDDISLSSTAL--KSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDL 172 (437)
Q Consensus 95 l~~L~~L~Ls~n~~~~~~~~~~~--~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L 172 (437)
+++|++|+|++|.+.+..+ ..+ .++++|++|++++|+++.. .+ .+....+..+++|++|
T Consensus 90 ~~~L~~L~l~~n~l~~~~~-~~~~~~~~~~L~~L~Ls~n~i~~~-~~-----------------~~~~~~~~~~~~L~~L 150 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMP-PLPLEATGLALSSLRLRNVSWATG-RS-----------------WLAELQQWLKPGLKVL 150 (310)
T ss_dssp HSCCCEEEEESCCCBSCCC-CCSSSCCCBCCSSCEEESCCCSST-TS-----------------SHHHHHTTBCSCCCEE
T ss_pred cCceeEEEeeCCEeccchh-hhhhhccCCCCCEEEeecccccch-hh-----------------hhHHHHhhhccCCCEE
Confidence 3569999999999987776 455 8999999999999998642 01 1112234579999999
Q ss_pred EeecCCCCCCchhHhhcCCcCccEEEeeCCccccc--CC-ccc-c--cCccEEEccCCcCCCCCCh----hccCCCCCcE
Q 013710 173 TVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGY--IP-KHL-H--SNLTHVDFSGNQLKGKIPT----SITLLENLQH 242 (437)
Q Consensus 173 ~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~--~~-~~~-~--~~L~~L~Ls~n~l~~~~~~----~l~~l~~L~~ 242 (437)
++++|.+... .+..+.++++|++|++++|++.+. .+ ... . ++|++|++++|+++ .++. .+..+++|++
T Consensus 151 ~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~ 228 (310)
T 4glp_A 151 SIAQAHSPAF-SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHS 228 (310)
T ss_dssp EEECCSSCCC-CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSS
T ss_pred EeeCCCcchh-hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCE
Confidence 9999999644 556788999999999999998652 11 111 1 78999999999997 3333 3578899999
Q ss_pred EEccCCCCCCCCCcccCCC---cccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccC
Q 013710 243 LNLSSNGLNGEIPSSIGDL---IALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQN 319 (437)
Q Consensus 243 L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~ 319 (437)
|+|++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|++|+|++|++++. |. +..+++|++|++++
T Consensus 229 L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 229 LDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDG 303 (310)
T ss_dssp EECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSS
T ss_pred EECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcC
Confidence 9999999998778777776 69999999999999 6677664 8999999999999964 33 67889999999999
Q ss_pred CcCCC
Q 013710 320 NNFHG 324 (437)
Q Consensus 320 N~l~~ 324 (437)
|++++
T Consensus 304 N~l~~ 308 (310)
T 4glp_A 304 NPFLV 308 (310)
T ss_dssp TTTSC
T ss_pred CCCCC
Confidence 99985
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=5.6e-22 Score=181.44 Aligned_cols=152 Identities=19% Similarity=0.212 Sum_probs=93.7
Q ss_pred hcCCcCccEEEeeC-CcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCc---EEEccCC-CCCCCCCcccCC
Q 013710 188 IGNMHKLRSVTISN-ANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQ---HLNLSSN-GLNGEIPSSIGD 260 (437)
Q Consensus 188 l~~l~~L~~L~L~~-n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~l~~ 260 (437)
+.++++|++|++++ |.+++..+..+. ++|++|++++|.+++ +|. |..+++|+ +|++++| .+++..+..|.+
T Consensus 76 f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~ 153 (239)
T 2xwt_C 76 FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG 153 (239)
T ss_dssp EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT
T ss_pred cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccc
Confidence 44455555555554 555433333332 455555555555553 333 55666666 7777777 776555556777
Q ss_pred Ccccc-eeecccccCCCCCccccCCCCCCCeeeccCCc-CCCcchhhhcCC-CCCCEEeccCCcCCCCCCCCcccCCCCC
Q 013710 261 LIALK-NVSLASNSLSGSVPESMASLTDMVHLDLSSNQ-LNGTIPRFFSDL-KKLRYLNLQNNNFHGVLPFNASILEKLQ 337 (437)
Q Consensus 261 l~~L~-~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~l~~l~~L~ 337 (437)
+++|+ +|++++|+++...+..+.. ++|++|+|++|+ +++..+..|.++ ++|++|++++|++++ +|.. .+++|+
T Consensus 154 l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~ 229 (239)
T 2xwt_C 154 LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLK 229 (239)
T ss_dssp TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCS
T ss_pred hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCc
Confidence 77777 7777777777333333433 677788888874 775556667777 778888888888774 3332 566777
Q ss_pred EEEecCCC
Q 013710 338 VFKVGGNT 345 (437)
Q Consensus 338 ~L~l~~N~ 345 (437)
.|+++++.
T Consensus 230 ~L~l~~~~ 237 (239)
T 2xwt_C 230 ELIARNTW 237 (239)
T ss_dssp EEECTTC-
T ss_pred eeeccCcc
Confidence 77777764
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=7.1e-22 Score=187.89 Aligned_cols=208 Identities=18% Similarity=0.276 Sum_probs=158.2
Q ss_pred EEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCEEEeecCCCC
Q 013710 101 LRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTVTNVPVN 180 (437)
Q Consensus 101 L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L~ls~n~l~ 180 (437)
+.+..+.+.+.+ .+..+++|++|++++|.++.+ + .+..+++|++|++++|.+.
T Consensus 24 ~~l~~~~~~~~~---~~~~l~~L~~L~l~~~~i~~l--~----------------------~~~~l~~L~~L~L~~n~i~ 76 (308)
T 1h6u_A 24 IAAGKSNVTDTV---TQADLDGITTLSAFGTGVTTI--E----------------------GVQYLNNLIGLELKDNQIT 76 (308)
T ss_dssp HHTTCSSTTSEE---CHHHHHTCCEEECTTSCCCCC--T----------------------TGGGCTTCCEEECCSSCCC
T ss_pred HHhCCCCcCcee---cHHHcCCcCEEEeeCCCccCc--h----------------------hhhccCCCCEEEccCCcCC
Confidence 344445554433 345677889999999887643 1 2457888999999999886
Q ss_pred CCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCccc
Q 013710 181 ASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSI 258 (437)
Q Consensus 181 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l 258 (437)
.. +. +..+++|++|++++|.+++. + .+. ++|++|++++|++++. + .+..+++|++|++++|.+++.. . +
T Consensus 77 ~~--~~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~-~-l 147 (308)
T 1h6u_A 77 DL--AP-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNIS-P-L 147 (308)
T ss_dssp CC--GG-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCG-G-G
T ss_pred CC--hh-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCc-c-c
Confidence 53 33 88888999999999988753 3 333 8899999999998853 3 3888899999999999888543 2 7
Q ss_pred CCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCE
Q 013710 259 GDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQV 338 (437)
Q Consensus 259 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~ 338 (437)
..+++|++|++++|++++. +. +..+++|++|++++|++++..+ +..+++|++|++++|++++..+ +..+++|+.
T Consensus 148 ~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~ 221 (308)
T 1h6u_A 148 AGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFI 221 (308)
T ss_dssp GGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCE
T ss_pred cCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCE
Confidence 8888999999999988853 33 7888899999999999886543 7788899999999999886543 778889999
Q ss_pred EEecCCCCCCcC
Q 013710 339 FKVGGNTNLCYN 350 (437)
Q Consensus 339 L~l~~N~~~c~~ 350 (437)
|++++|++.+..
T Consensus 222 L~l~~N~i~~~~ 233 (308)
T 1h6u_A 222 VTLTNQTITNQP 233 (308)
T ss_dssp EEEEEEEEECCC
T ss_pred EEccCCeeecCC
Confidence 999999876543
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=6.5e-22 Score=181.01 Aligned_cols=190 Identities=14% Similarity=0.164 Sum_probs=142.6
Q ss_pred CCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCc-ccccCCcccc--cCccEEEccC-CcCCCCCChhccCCCCCcEE
Q 013710 168 NLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNAN-VTGYIPKHLH--SNLTHVDFSG-NQLKGKIPTSITLLENLQHL 243 (437)
Q Consensus 168 ~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~--~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L 243 (437)
+|++|++++|.+... .+..+.++++|++|++++|+ +++..+..+. ++|++|++++ |.+++..+..|.++++|++|
T Consensus 32 ~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 344444444444322 22346777888888888886 7655554554 8999999998 99987777788999999999
Q ss_pred EccCCCCCCCCCcccCCCcccc---eeecccc-cCCCCCccccCCCCCCC-eeeccCCcCCCcchhhhcCCCCCCEEecc
Q 013710 244 NLSSNGLNGEIPSSIGDLIALK---NVSLASN-SLSGSVPESMASLTDMV-HLDLSSNQLNGTIPRFFSDLKKLRYLNLQ 318 (437)
Q Consensus 244 ~L~~n~l~~~~~~~l~~l~~L~---~L~L~~n-~l~~~~~~~l~~l~~L~-~L~L~~N~l~~~~~~~l~~l~~L~~L~L~ 318 (437)
++++|.+++ +|. +..+.+|+ +|++++| ++++..+..|.++++|+ +|++++|+++...+..+.. ++|++|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 999999985 565 88888888 9999999 88866667788999999 9999999998444444544 889999999
Q ss_pred CCc-CCCCCCCCcccC-CCCCEEEecCCCCCCcCccccccccccc
Q 013710 319 NNN-FHGVLPFNASIL-EKLQVFKVGGNTNLCYNHTVLSSKLKLG 361 (437)
Q Consensus 319 ~N~-l~~~~~~~l~~l-~~L~~L~l~~N~~~c~~~~~~~~~~~~~ 361 (437)
+|+ +++..+..+..+ ++|+.|++++|+........+..+..+.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~ 232 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELI 232 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEE
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceee
Confidence 995 887777778888 8999999999987654444444444443
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=3.1e-21 Score=177.86 Aligned_cols=178 Identities=20% Similarity=0.252 Sum_probs=155.4
Q ss_pred CCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeC
Q 013710 122 TLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISN 201 (437)
Q Consensus 122 ~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~ 201 (437)
+.++++++++.++.+ |..+ ..+++.|++++|.+... .+..+.++++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~--p~~~-----------------------~~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~ 68 (251)
T 3m19_A 15 GKKEVDCQGKSLDSV--PSGI-----------------------PADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLDY 68 (251)
T ss_dssp GGTEEECTTCCCSSC--CSCC-----------------------CTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCcccc--CCCC-----------------------CCCCCEEEccCCCcCcc-CHhHhcCcccCCEEECCC
Confidence 467788888887654 4322 25899999999999765 445688999999999999
Q ss_pred CcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCc
Q 013710 202 ANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVP 279 (437)
Q Consensus 202 n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 279 (437)
|.+++..+..+. ++|++|++++|++++..+..|..+++|++|+|++|.+++..+..|..+++|++|++++|++++..+
T Consensus 69 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 148 (251)
T 3m19_A 69 NQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH
Confidence 999987776665 899999999999998877889999999999999999997777778999999999999999997777
Q ss_pred cccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCC
Q 013710 280 ESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGV 325 (437)
Q Consensus 280 ~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 325 (437)
..+..+++|++|+|++|++++..+..+..+++|++|++++|+++..
T Consensus 149 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 7899999999999999999988888899999999999999999865
No 82
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=5.5e-21 Score=191.40 Aligned_cols=240 Identities=22% Similarity=0.247 Sum_probs=113.5
Q ss_pred hhccccccccCCCCCccccCCCCCC-CCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccc
Q 013710 71 RALQSLNIPSKSACSLYKCDSSKPF-SHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSF 149 (437)
Q Consensus 71 ~~L~~l~~~~~~~c~~~~~~~~~~l-~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l 149 (437)
.+|+.|+++++.... +..+ ++|++|++++|.+.+ ++ .|+++++|++|++++|+++.+ |.... .+..+
T Consensus 111 ~~L~~L~l~~n~l~~------l~~~~~~L~~L~L~~n~l~~-lp--~~~~l~~L~~L~l~~N~l~~l--p~~~~-~L~~L 178 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKA------LSDLPPLLEYLGVSNNQLEK-LP--ELQNSSFLKIIDVDNNSLKKL--PDLPP-SLEFI 178 (454)
T ss_dssp TTCCEEECCSSCCSC------CCSCCTTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSCC--CCCCT-TCCEE
T ss_pred CCCcEEECCCCccCc------ccCCCCCCCEEECcCCCCCC-Cc--ccCCCCCCCEEECCCCcCccc--CCCcc-cccEE
Confidence 456666665543221 1111 467777777777754 54 477777777777777777643 33221 11111
Q ss_pred c-ccccCCCCChhhhcCCCCCCEEEeecCCCCCC------------------chhHhhcCCcCccEEEeeCCcccccCCc
Q 013710 150 S-CIHSLHHLSGVFLSRFVNLTDLTVTNVPVNAS------------------GLYVIIGNMHKLRSVTISNANVTGYIPK 210 (437)
Q Consensus 150 ~-~l~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~------------------~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 210 (437)
. .-+.+..++ .+.++++|++|++++|.+... .++ .++.+++|++|++++|++++ +|.
T Consensus 179 ~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-l~~ 254 (454)
T 1jl5_A 179 AAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT-LPD 254 (454)
T ss_dssp ECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCS
T ss_pred ECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCc-ccc
Confidence 1 001222222 234455555555555544321 122 24455555555555555553 222
Q ss_pred ccccCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCC-CCCC
Q 013710 211 HLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASL-TDMV 289 (437)
Q Consensus 211 ~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~ 289 (437)
..++|++|++++|++++ +|.. .++|++|++++|.+++ ++.. .++|++|++++|++++ ++ .+ ++|+
T Consensus 255 -~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~ 320 (454)
T 1jl5_A 255 -LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LC----DLPPSLE 320 (454)
T ss_dssp -CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-EC----CCCTTCC
T ss_pred -cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-cc----CCcCcCC
Confidence 12455555555555543 2221 2455555555555543 1100 1233444444444332 11 11 3556
Q ss_pred eeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCC
Q 013710 290 HLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLC 348 (437)
Q Consensus 290 ~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c 348 (437)
+|++++|++++ +|.. +++|++|++++|+++ .+|. .+++|++|++++|+...
T Consensus 321 ~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 321 ELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp EEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSS
T ss_pred EEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCc
Confidence 66666666553 3322 355666666666655 2333 24556666666665544
No 83
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.87 E-value=1.2e-24 Score=218.56 Aligned_cols=181 Identities=19% Similarity=0.190 Sum_probs=93.1
Q ss_pred CCCCEEEeecCCCCCCc---hhHhhcCCcCccEEEeeCCcccccCCcc----c---ccCccEEEccCCcCCCC----CCh
Q 013710 167 VNLTDLTVTNVPVNASG---LYVIIGNMHKLRSVTISNANVTGYIPKH----L---HSNLTHVDFSGNQLKGK----IPT 232 (437)
Q Consensus 167 ~~L~~L~ls~n~l~~~~---~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~---~~~L~~L~Ls~n~l~~~----~~~ 232 (437)
++|++|++++|.+...+ ++..+..+++|++|++++|.+.+..... + .++|++|++++|.++.. ++.
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 278 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR 278 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH
Confidence 35555555555544332 2334444555555555555554321111 1 14555555555555532 334
Q ss_pred hccCCCCCcEEEccCCCCCCCCCcccCC-----CcccceeecccccCCCC----CccccCCCCCCCeeeccCCcCCCcch
Q 013710 233 SITLLENLQHLNLSSNGLNGEIPSSIGD-----LIALKNVSLASNSLSGS----VPESMASLTDMVHLDLSSNQLNGTIP 303 (437)
Q Consensus 233 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~-----l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~~ 303 (437)
.+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++. ++..+..+++|++|+|++|.+++..+
T Consensus 279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 358 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGV 358 (461)
T ss_dssp HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHH
T ss_pred HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccH
Confidence 4445556666666666554322222221 14566666666665543 23444455666666666666654433
Q ss_pred hhhcC-----CCCCCEEeccCCcCCC----CCCCCcccCCCCCEEEecCCCCC
Q 013710 304 RFFSD-----LKKLRYLNLQNNNFHG----VLPFNASILEKLQVFKVGGNTNL 347 (437)
Q Consensus 304 ~~l~~-----l~~L~~L~L~~N~l~~----~~~~~l~~l~~L~~L~l~~N~~~ 347 (437)
..+.. .++|++|++++|++++ .++..+..+++|++|++++|+..
T Consensus 359 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 359 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 33321 4566667777666664 44555556666777777776544
No 84
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.87 E-value=3.1e-20 Score=192.04 Aligned_cols=237 Identities=24% Similarity=0.280 Sum_probs=174.1
Q ss_pred hhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhcccccc
Q 013710 71 RALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFS 150 (437)
Q Consensus 71 ~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~ 150 (437)
.+|+.|+++++..- .+.. .+++|++|+|++|++. .++. .+++|++|++++|+++.+ |. . ..++.
T Consensus 61 ~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l--~~-~---l~~L~ 124 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHL--PA-L---PSGLC 124 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEECSCCCCCC--CC-C---CTTCC
T ss_pred CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEECcCCcCCCC--CC-C---CCCcC
Confidence 46888888775432 2111 4578888888888875 4552 678888888888888754 43 1 12222
Q ss_pred cc----ccCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccccCccEEEccCCcC
Q 013710 151 CI----HSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQL 226 (437)
Q Consensus 151 ~l----~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~Ls~n~l 226 (437)
.+ +.+..++ ..+++|++|++++|.+... +. .+.+|+.|++++|.+++ ++ ...++|+.|++++|.+
T Consensus 125 ~L~L~~N~l~~lp----~~l~~L~~L~Ls~N~l~~l--~~---~~~~L~~L~L~~N~l~~-l~-~~~~~L~~L~Ls~N~l 193 (622)
T 3g06_A 125 KLWIFGNQLTSLP----VLPPGLQELSVSDNQLASL--PA---LPSELCKLWAYNNQLTS-LP-MLPSGLQELSVSDNQL 193 (622)
T ss_dssp EEECCSSCCSCCC----CCCTTCCEEECCSSCCSCC--CC---CCTTCCEEECCSSCCSC-CC-CCCTTCCEEECCSSCC
T ss_pred EEECCCCCCCcCC----CCCCCCCEEECcCCcCCCc--CC---ccCCCCEEECCCCCCCC-Cc-ccCCCCcEEECCCCCC
Confidence 22 1222332 2458899999999988642 22 34688899999998884 55 3448899999999998
Q ss_pred CCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhh
Q 013710 227 KGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFF 306 (437)
Q Consensus 227 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l 306 (437)
++ ++. .+++|+.|++++|.++ .++. .+++|+.|++++|++++ +| ..+++|++|+|++|+|+. +|.
T Consensus 194 ~~-l~~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~-- 258 (622)
T 3g06_A 194 AS-LPT---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM-- 258 (622)
T ss_dssp SC-CCC---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC--
T ss_pred CC-CCC---ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc--
Confidence 84 443 3478999999999988 4544 34789999999999985 55 456899999999999984 444
Q ss_pred cCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCc
Q 013710 307 SDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNH 351 (437)
Q Consensus 307 ~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~ 351 (437)
.+++|++|+|++|+++ .+|..+..+++|+.|++++|++.....
T Consensus 259 -~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 259 -LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp -CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred -ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence 6789999999999999 778889999999999999999875443
No 85
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.86 E-value=3e-24 Score=215.54 Aligned_cols=180 Identities=15% Similarity=0.197 Sum_probs=86.2
Q ss_pred CCCCCEEEeecCCCCCCc---hhHhhcCCcCccEEEeeCCcccccCCcccc-------cCccEEEccCCcCCCC----CC
Q 013710 166 FVNLTDLTVTNVPVNASG---LYVIIGNMHKLRSVTISNANVTGYIPKHLH-------SNLTHVDFSGNQLKGK----IP 231 (437)
Q Consensus 166 l~~L~~L~ls~n~l~~~~---~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-------~~L~~L~Ls~n~l~~~----~~ 231 (437)
.++|++|++++|.+...+ ++..+..+++|++|++++|.+.+.....+. ++|++|++++|.+++. ++
T Consensus 141 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 220 (461)
T 1z7x_W 141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH
T ss_pred CCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHH
Confidence 445666666666655432 234445556666666666665543333222 2566666666665532 24
Q ss_pred hhccCCCCCcEEEccCCCCCCCC-----CcccCCCcccceeecccccCCCC----CccccCCCCCCCeeeccCCcCCCcc
Q 013710 232 TSITLLENLQHLNLSSNGLNGEI-----PSSIGDLIALKNVSLASNSLSGS----VPESMASLTDMVHLDLSSNQLNGTI 302 (437)
Q Consensus 232 ~~l~~l~~L~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~ 302 (437)
..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++. ++..+..+++|++|+|++|.+++..
T Consensus 221 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 300 (461)
T 1z7x_W 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH
Confidence 44455556666666666554211 11122345555555555555532 3334444555555555555554322
Q ss_pred hhhhcC-----CCCCCEEeccCCcCCCC----CCCCcccCCCCCEEEecCCC
Q 013710 303 PRFFSD-----LKKLRYLNLQNNNFHGV----LPFNASILEKLQVFKVGGNT 345 (437)
Q Consensus 303 ~~~l~~-----l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~l~~N~ 345 (437)
+..+.. .++|++|++++|.+++. ++..+..+++|++|++++|.
T Consensus 301 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 352 (461)
T 1z7x_W 301 ARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR 352 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB
T ss_pred HHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc
Confidence 222211 13455555555554432 22223334455555555553
No 86
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=2.3e-20 Score=186.94 Aligned_cols=261 Identities=22% Similarity=0.239 Sum_probs=170.9
Q ss_pred hhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhcccccc
Q 013710 71 RALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFS 150 (437)
Q Consensus 71 ~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~ 150 (437)
++|+.|+++++.... +. + .+++|++|++++|.+.+ ++ .+ .++|++|++++|+++.+ |. +..+.
T Consensus 91 ~~L~~L~l~~n~l~~-lp-~---~~~~L~~L~l~~n~l~~-l~--~~--~~~L~~L~L~~n~l~~l--p~-----~~~l~ 153 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LP-E---LPQSLKSLLVDNNNLKA-LS--DL--PPLLEYLGVSNNQLEKL--PE-----LQNSS 153 (454)
T ss_dssp TTCSEEECCSSCCSS-CC-C---CCTTCCEEECCSSCCSC-CC--SC--CTTCCEEECCSSCCSSC--CC-----CTTCT
T ss_pred CCCCEEEccCCcCCc-cc-c---ccCCCcEEECCCCccCc-cc--CC--CCCCCEEECcCCCCCCC--cc-----cCCCC
Confidence 468999988755433 21 1 24789999999999864 33 11 27999999999999864 52 22333
Q ss_pred ccccCC----CCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccccCccEEEccCCcC
Q 013710 151 CIHSLH----HLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQL 226 (437)
Q Consensus 151 ~l~~l~----~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~Ls~n~l 226 (437)
.++.+. .+.+ +.....+|++|++++|.+.. ++ .++++++|++|++++|.+++ +|.. ..+|++|++++|.+
T Consensus 154 ~L~~L~l~~N~l~~-lp~~~~~L~~L~L~~n~l~~--l~-~~~~l~~L~~L~l~~N~l~~-l~~~-~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 154 FLKIIDVDNNSLKK-LPDLPPSLEFIAAGNNQLEE--LP-ELQNLPFLTAIYADNNSLKK-LPDL-PLSLESIVAGNNIL 227 (454)
T ss_dssp TCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSS--CC-CCTTCTTCCEEECCSSCCSS-CCCC-CTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCcc-cCCCcccccEEECcCCcCCc--Cc-cccCCCCCCEEECCCCcCCc-CCCC-cCcccEEECcCCcC
Confidence 332221 2221 22344699999999999865 44 58899999999999999985 4432 37899999999999
Q ss_pred CCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCC--cchh
Q 013710 227 KGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNG--TIPR 304 (437)
Q Consensus 227 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~--~~~~ 304 (437)
+ .+| .+..+++|++|++++|++++ +|.. +++|++|++++|++.+ +|.. .++|++|++++|++++ ..|.
T Consensus 228 ~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~ 297 (454)
T 1jl5_A 228 E-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPP 297 (454)
T ss_dssp S-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCT
T ss_pred C-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCC
Confidence 8 566 48899999999999999984 4442 3678888888888874 4432 2567777777776664 1111
Q ss_pred hh-------------cCC-CCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCcccccccccccccCCCCCC
Q 013710 305 FF-------------SDL-KKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNHTVLSSKLKLGIAPCDKHG 369 (437)
Q Consensus 305 ~l-------------~~l-~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~~~~~~~~~~~~~~c~~~~ 369 (437)
.+ ..+ ++|++|++++|++++ +|.. +++|+.|++++|....... .+..+..+....+...+
T Consensus 298 ~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~lp~-~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 298 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEVPE-LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp TCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSS
T ss_pred cCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccccc-hhhhccEEECCCCCCCc
Confidence 11 112 366777777777664 4432 4677777777776553222 33334444444444333
No 87
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.86 E-value=5e-21 Score=174.01 Aligned_cols=157 Identities=22% Similarity=0.228 Sum_probs=143.1
Q ss_pred CccEEEeeCCcccccCCcccccCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccc
Q 013710 193 KLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASN 272 (437)
Q Consensus 193 ~L~~L~L~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 272 (437)
.-+.++.++++++ .+|..+.++|++|+|++|.+++..+..|..+++|++|+|++|.++...+..|..+++|++|+|++|
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred eCCEeEccCCCcC-ccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 3567889888887 678878899999999999999888899999999999999999998666677899999999999999
Q ss_pred cCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCc
Q 013710 273 SLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNH 351 (437)
Q Consensus 273 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~ 351 (437)
++++..+..|..+++|++|+|++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|++.|+|.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 999777777899999999999999999 677888999999999999999997777778999999999999999999996
No 88
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=2.8e-22 Score=195.12 Aligned_cols=237 Identities=17% Similarity=0.204 Sum_probs=175.1
Q ss_pred CCCCeeEEEccCCCCCCcCCh----hhhCCCC-CCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcC-CC
Q 013710 94 PFSHLLSLRLSNCSDDISLSS----TALKSLS-TLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSR-FV 167 (437)
Q Consensus 94 ~l~~L~~L~Ls~n~~~~~~~~----~~~~~l~-~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~-l~ 167 (437)
...+|++|+|++|.+.+ .+. ..|.+++ +|++|+|++|+++... +..+ ...+.. .+
T Consensus 20 ~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-~~~l-----------------~~~l~~~~~ 80 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYS-ISTVELIQAFANTPASVTSLNLSGNSLGFKN-SDEL-----------------VQILAAIPA 80 (362)
T ss_dssp SCTTCCEEECTTSCGGG-SCHHHHHHHHHTCCTTCCEEECCSSCGGGSC-HHHH-----------------HHHHHTSCT
T ss_pred CCCCceEEEccCCCCCh-HHHHHHHHHHHhCCCceeEEECcCCCCCHHH-HHHH-----------------HHHHhccCC
Confidence 34569999999999854 444 5788888 8999999999886430 0100 011223 38
Q ss_pred CCCEEEeecCCCCCCch---hHhhcCC-cCccEEEeeCCcccccCCcccc-------cCccEEEccCCcCCCCCCh----
Q 013710 168 NLTDLTVTNVPVNASGL---YVIIGNM-HKLRSVTISNANVTGYIPKHLH-------SNLTHVDFSGNQLKGKIPT---- 232 (437)
Q Consensus 168 ~L~~L~ls~n~l~~~~~---~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~-------~~L~~L~Ls~n~l~~~~~~---- 232 (437)
+|++|++++|.+...+. ...+..+ ++|++|++++|.+++..+..+. .+|++|++++|.+++....
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 99999999999876542 2345555 8999999999999876655442 4899999999999854433
Q ss_pred hccCCC-CCcEEEccCCCCCCCCCcccC----CC-cccceeecccccCCCC----CccccCC-CCCCCeeeccCCcCCCc
Q 013710 233 SITLLE-NLQHLNLSSNGLNGEIPSSIG----DL-IALKNVSLASNSLSGS----VPESMAS-LTDMVHLDLSSNQLNGT 301 (437)
Q Consensus 233 ~l~~l~-~L~~L~L~~n~l~~~~~~~l~----~l-~~L~~L~L~~n~l~~~----~~~~l~~-l~~L~~L~L~~N~l~~~ 301 (437)
.+..++ +|++|+|++|.+++..+..+. .. ++|++|++++|.+++. ++..+.. .++|++|+|++|.+++.
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 240 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCC
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcH
Confidence 345555 999999999999866654443 44 5999999999999863 3444544 46999999999999875
Q ss_pred ch----hhhcCCCCCCEEeccCCcCCCC-------CCCCcccCCCCCEEEecCCCCCCc
Q 013710 302 IP----RFFSDLKKLRYLNLQNNNFHGV-------LPFNASILEKLQVFKVGGNTNLCY 349 (437)
Q Consensus 302 ~~----~~l~~l~~L~~L~L~~N~l~~~-------~~~~l~~l~~L~~L~l~~N~~~c~ 349 (437)
.+ ..+..+++|++|++++|.+.+. ++..+..+++|+.||+++|+....
T Consensus 241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 54 4456789999999999985533 233566788899999999987655
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.85 E-value=1.6e-22 Score=198.57 Aligned_cols=241 Identities=15% Similarity=0.215 Sum_probs=181.2
Q ss_pred hhhhccccccccCCCCC---ccccCCCCCCCCeeEEEccCCCCC---CcCCh------hhhCCCCCCCEEecccCCCCCC
Q 013710 69 QIRALQSLNIPSKSACS---LYKCDSSKPFSHLLSLRLSNCSDD---ISLSS------TALKSLSTLQNLTFFNCPIAPI 136 (437)
Q Consensus 69 ~~~~L~~l~~~~~~~c~---~~~~~~~~~l~~L~~L~Ls~n~~~---~~~~~------~~~~~l~~L~~L~L~~n~l~~i 136 (437)
.+++|+.|+++++..-. ...+..+..+++|++|+|++|.+. +.++. ..|.++++|++|+|++|.++..
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 45668888887743322 123456778899999999997543 23332 1247899999999999998642
Q ss_pred CCCchhhhccccccccccCCCCChhhhcCCCCCCEEEeecCCCCCCc---hhHhhcCC---------cCccEEEeeCCcc
Q 013710 137 HFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTVTNVPVNASG---LYVIIGNM---------HKLRSVTISNANV 204 (437)
Q Consensus 137 ~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~---~~~~l~~l---------~~L~~L~L~~n~l 204 (437)
. . ..-...+..+++|++|++++|.+...+ +...+..+ ++|++|++++|++
T Consensus 110 ~----~--------------~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 110 A----Q--------------EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL 171 (386)
T ss_dssp T----H--------------HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC
T ss_pred H----H--------------HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCC
Confidence 0 0 000124568899999999999986432 33344445 8999999999999
Q ss_pred ccc-CC---cccc--cCccEEEccCCcCCC-----CCChhccCCCCCcEEEccCCCCC----CCCCcccCCCcccceeec
Q 013710 205 TGY-IP---KHLH--SNLTHVDFSGNQLKG-----KIPTSITLLENLQHLNLSSNGLN----GEIPSSIGDLIALKNVSL 269 (437)
Q Consensus 205 ~~~-~~---~~~~--~~L~~L~Ls~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L 269 (437)
+.. ++ ..+. ++|++|++++|+++. ..+..+..+++|++|+|++|.++ ..++..+..+++|++|+|
T Consensus 172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L 251 (386)
T 2ca6_A 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251 (386)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence 733 33 2232 799999999999872 23337889999999999999995 456778899999999999
Q ss_pred ccccCCCC----Ccccc--CCCCCCCeeeccCCcCCC----cchhhh-cCCCCCCEEeccCCcCCCCCC
Q 013710 270 ASNSLSGS----VPESM--ASLTDMVHLDLSSNQLNG----TIPRFF-SDLKKLRYLNLQNNNFHGVLP 327 (437)
Q Consensus 270 ~~n~l~~~----~~~~l--~~l~~L~~L~L~~N~l~~----~~~~~l-~~l~~L~~L~L~~N~l~~~~~ 327 (437)
++|.+++. ++..+ ..+++|++|+|++|.+++ .++..+ .++++|++|++++|++++..+
T Consensus 252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 99999865 45566 348999999999999997 377766 668999999999999997653
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=2.5e-22 Score=193.06 Aligned_cols=221 Identities=18% Similarity=0.207 Sum_probs=176.5
Q ss_pred CeeEEEccCCCCCCcCChhhhCCC--CCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCEEEe
Q 013710 97 HLLSLRLSNCSDDISLSSTALKSL--STLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTV 174 (437)
Q Consensus 97 ~L~~L~Ls~n~~~~~~~~~~~~~l--~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L~l 174 (437)
.++.++++++.+. +..+..+ +++++|++++|.++.. +. .+..+++|++|++
T Consensus 48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~--~~---------------------~~~~~~~L~~L~L 100 (336)
T 2ast_B 48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQP--LA---------------------EHFSPFRVQHMDL 100 (336)
T ss_dssp TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSC--CC---------------------SCCCCBCCCEEEC
T ss_pred hheeeccccccCC----HHHHHhhhhccceEEEcCCcccccc--ch---------------------hhccCCCCCEEEc
Confidence 5789999988775 3567777 8999999999987643 11 1336889999999
Q ss_pred ecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCC-cCCCC-CChhccCCCCCcEEEccCC-C
Q 013710 175 TNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGN-QLKGK-IPTSITLLENLQHLNLSSN-G 249 (437)
Q Consensus 175 s~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n-~l~~~-~~~~l~~l~~L~~L~L~~n-~ 249 (437)
++|.+...+++..+..+++|++|++++|.+++..+..+. ++|++|++++| .+++. ++..+..+++|++|++++| .
T Consensus 101 ~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~ 180 (336)
T 2ast_B 101 SNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD 180 (336)
T ss_dssp TTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred cCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC
Confidence 999986555777889999999999999998877666665 89999999999 67642 5566788999999999999 8
Q ss_pred CCCC-CCcccCCCc-ccceeecccc--cCC-CCCccccCCCCCCCeeeccCCc-CCCcchhhhcCCCCCCEEeccCCc-C
Q 013710 250 LNGE-IPSSIGDLI-ALKNVSLASN--SLS-GSVPESMASLTDMVHLDLSSNQ-LNGTIPRFFSDLKKLRYLNLQNNN-F 322 (437)
Q Consensus 250 l~~~-~~~~l~~l~-~L~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~l~~l~~L~~L~L~~N~-l 322 (437)
+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +
T Consensus 181 l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 260 (336)
T 2ast_B 181 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 260 (336)
T ss_dssp CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred cChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCC
Confidence 8743 456678888 9999999999 455 3456677788999999999999 776777788899999999999995 3
Q ss_pred CCCCCCCcccCCCCCEEEecCC
Q 013710 323 HGVLPFNASILEKLQVFKVGGN 344 (437)
Q Consensus 323 ~~~~~~~l~~l~~L~~L~l~~N 344 (437)
.......+..+++|+.|++++|
T Consensus 261 ~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 261 IPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CGGGGGGGGGCTTCCEEECTTS
T ss_pred CHHHHHHHhcCCCCCEEeccCc
Confidence 3322235778999999999998
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=6.1e-21 Score=184.75 Aligned_cols=227 Identities=16% Similarity=0.140 Sum_probs=169.0
Q ss_pred CCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCE-EEe
Q 013710 96 SHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTD-LTV 174 (437)
Q Consensus 96 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~-L~l 174 (437)
+++++|+|++|++. .++..+|.++++|++|+|++|++.. .++...|.+++++++ +.+
T Consensus 30 ~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~---------------------~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 30 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLE---------------------VIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCC---------------------EECTTSBCSCTTCCEEEEE
T ss_pred CCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCC---------------------ccChhHhhcchhhhhhhcc
Confidence 57999999999985 6676789999999999999998743 133345778888776 556
Q ss_pred ecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccC-CcCCCCCChhccCCC-CCcEEEccCCCC
Q 013710 175 TNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSG-NQLKGKIPTSITLLE-NLQHLNLSSNGL 250 (437)
Q Consensus 175 s~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~-n~l~~~~~~~l~~l~-~L~~L~L~~n~l 250 (437)
.+|++... .+..|.++++|++|++++|++.+..+..+. .++..|++.+ +.+....+..|..+. .++.|++++|++
T Consensus 88 ~~N~l~~l-~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYI-NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEE-CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCccccc-CchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 67888643 456789999999999999999865554444 5677888865 567755556777765 689999999999
Q ss_pred CCCCCcccCCCcccceeeccc-ccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCC
Q 013710 251 NGEIPSSIGDLIALKNVSLAS-NSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFN 329 (437)
Q Consensus 251 ~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 329 (437)
+ .++.......+|++|++.+ |.++...+..|.++++|++|+|++|+|+...+..+ .+|+.|.+.++.--..+|.
T Consensus 167 ~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~- 241 (350)
T 4ay9_X 167 Q-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLPT- 241 (350)
T ss_dssp C-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCCC-
T ss_pred c-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCCC-
Confidence 8 4555555667899999975 67774445678999999999999999996555444 4555665554433336663
Q ss_pred cccCCCCCEEEecCCCCCCcCc
Q 013710 330 ASILEKLQVFKVGGNTNLCYNH 351 (437)
Q Consensus 330 l~~l~~L~~L~l~~N~~~c~~~ 351 (437)
+..+++|+.+++. |++.|.+.
T Consensus 242 l~~l~~L~~l~l~-~~~~c~~~ 262 (350)
T 4ay9_X 242 LEKLVALMEASLT-YPSHCCAF 262 (350)
T ss_dssp TTTCCSCCEEECS-CHHHHHHH
T ss_pred chhCcChhhCcCC-CCccccch
Confidence 7889999999986 55666543
No 92
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=5.5e-20 Score=164.48 Aligned_cols=156 Identities=24% Similarity=0.258 Sum_probs=136.1
Q ss_pred cEEEeeCCcccccCCcccccCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccC
Q 013710 195 RSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSL 274 (437)
Q Consensus 195 ~~L~L~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 274 (437)
+.++.++++++ .+|..+.++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++
T Consensus 10 ~~v~c~~~~l~-~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCS-SCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCcc-CCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 56777778777 56766778899999999999877777788999999999999999976666788999999999999999
Q ss_pred CCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCc
Q 013710 275 SGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNH 351 (437)
Q Consensus 275 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~ 351 (437)
++..+..+..+++|++|+|++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.|.++
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 97666678899999999999999998777778999999999999999997777778889999999999999999886
No 93
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=1e-21 Score=188.88 Aligned_cols=225 Identities=16% Similarity=0.221 Sum_probs=126.2
Q ss_pred CCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCEEEee
Q 013710 96 SHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTVT 175 (437)
Q Consensus 96 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L~ls 175 (437)
+++++|++++|.+.+..+ .+.++++|++|++++|.++...+ ...+..+++|++|+++
T Consensus 70 ~~l~~L~l~~n~l~~~~~--~~~~~~~L~~L~L~~~~l~~~~~---------------------~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLA--EHFSPFRVQHMDLSNSVIEVSTL---------------------HGILSQCSKLQNLSLE 126 (336)
T ss_dssp TTCSEEECTTCEECSCCC--SCCCCBCCCEEECTTCEECHHHH---------------------HHHHTTBCCCSEEECT
T ss_pred ccceEEEcCCccccccch--hhccCCCCCEEEccCCCcCHHHH---------------------HHHHhhCCCCCEEeCc
Confidence 466777777766655443 34566777777777765432100 1134556667777777
Q ss_pred cCCCCCCchhHhhcCCcCccEEEeeCC-ccccc-CCcccc--cCccEEEccCC-cCCCC-CChhccCCC-CCcEEEccCC
Q 013710 176 NVPVNASGLYVIIGNMHKLRSVTISNA-NVTGY-IPKHLH--SNLTHVDFSGN-QLKGK-IPTSITLLE-NLQHLNLSSN 248 (437)
Q Consensus 176 ~n~l~~~~~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~~~--~~L~~L~Ls~n-~l~~~-~~~~l~~l~-~L~~L~L~~n 248 (437)
+|.+... .+..+..+++|++|++++| .+++. ++..+. ++|++|++++| .+++. ++..+..++ +|++|++++|
T Consensus 127 ~~~l~~~-~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 127 GLRLSDP-IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TCBCCHH-HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred CcccCHH-HHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 6665433 4445666667777777766 45432 222222 66777777776 66532 344556666 6777777766
Q ss_pred --CCC-CCCCcccCCCcccceeeccccc-CCCCCccccCCCCCCCeeeccCCc-CCCcchhhhcCCCCCCEEeccCCcCC
Q 013710 249 --GLN-GEIPSSIGDLIALKNVSLASNS-LSGSVPESMASLTDMVHLDLSSNQ-LNGTIPRFFSDLKKLRYLNLQNNNFH 323 (437)
Q Consensus 249 --~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~l~~l~~L~~L~L~~N~l~ 323 (437)
.++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+.++++|++|++++| ++
T Consensus 206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~ 284 (336)
T 2ast_B 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP 284 (336)
T ss_dssp GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC
T ss_pred cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC
Confidence 343 2334445566677777777766 554555566666777777777663 32222224566667777777766 33
Q ss_pred CCCCCCcccC-CCCCEEEecCCCCCC
Q 013710 324 GVLPFNASIL-EKLQVFKVGGNTNLC 348 (437)
Q Consensus 324 ~~~~~~l~~l-~~L~~L~l~~N~~~c 348 (437)
.. .+..+ .+++.|++++|...-
T Consensus 285 ~~---~~~~l~~~l~~L~l~~n~l~~ 307 (336)
T 2ast_B 285 DG---TLQLLKEALPHLQINCSHFTT 307 (336)
T ss_dssp TT---CHHHHHHHSTTSEESCCCSCC
T ss_pred HH---HHHHHHhhCcceEEecccCcc
Confidence 21 22222 224455566665443
No 94
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.84 E-value=4.1e-21 Score=186.79 Aligned_cols=178 Identities=20% Similarity=0.179 Sum_probs=151.2
Q ss_pred CEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc---cCccEEEccCCcCCCCCChhccCCCCCcEEEcc
Q 013710 170 TDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH---SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLS 246 (437)
Q Consensus 170 ~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~---~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 246 (437)
+.++++++.+.. ++..+. ..+++|+|++|++++..+..+. ++|++|+|++|+|++..+..|.++++|++|+|+
T Consensus 21 ~~l~c~~~~l~~--iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPN--VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSS--CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCc--cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 578888888854 333332 4689999999999976666552 899999999999998888889999999999999
Q ss_pred CCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhh---cCCCCCCEEeccCCcCC
Q 013710 247 SNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFF---SDLKKLRYLNLQNNNFH 323 (437)
Q Consensus 247 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l---~~l~~L~~L~L~~N~l~ 323 (437)
+|.+++..+..|..+++|++|+|++|++.+..+..|..+++|++|+|++|++++..+..| ..+++|++|+|++|+|+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999997777789999999999999999998778899999999999999999997666656 56999999999999999
Q ss_pred CCCCCCcccCCC--CCEEEecCCCCCCcCc
Q 013710 324 GVLPFNASILEK--LQVFKVGGNTNLCYNH 351 (437)
Q Consensus 324 ~~~~~~l~~l~~--L~~L~l~~N~~~c~~~ 351 (437)
+..+..+..++. ++.|++++|+|.|+|.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred ccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 665566777776 4889999999999997
No 95
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.83 E-value=2.2e-20 Score=164.95 Aligned_cols=175 Identities=25% Similarity=0.336 Sum_probs=132.3
Q ss_pred cEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCc-ccCCCcccceeecccccCCCCCccccCCCCCCCeeeccC
Q 013710 217 THVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPS-SIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSS 295 (437)
Q Consensus 217 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 295 (437)
+++++++|+++ .+|..+.. +|++|++++|.+++..+. .|..+++|++|++++|++++..+..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56777777775 45544432 778888888888755443 377888888888888888877778888888999999999
Q ss_pred CcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCc-ccccccccccccCCCCCCCCCCC
Q 013710 296 NQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNH-TVLSSKLKLGIAPCDKHGLPISP 374 (437)
Q Consensus 296 N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~-~~~~~~~~~~~~~c~~~~~~~~~ 374 (437)
|++++..+..|.++++|++|+|++|++++..|..+..+++|++|++++|++.|+|+ .++..|.... .-......|..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~--~~~~~~~~C~~ 165 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKK--SLNGGAARCGA 165 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHH--CCSGGGCBBCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHc--CCCCCCCCCCC
Confidence 99987777778889999999999999998888889999999999999999999998 3444433221 11122345777
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q 013710 375 PPAKDNSSDDSENDSSDDDDSD 396 (437)
Q Consensus 375 p~~~~~~~~~~~~~~~~~~~~~ 396 (437)
|+...+....+.......|...
T Consensus 166 P~~l~~~~l~~l~~~~~~C~~~ 187 (192)
T 1w8a_A 166 PSKVRDVQIKDLPHSEFKCSSE 187 (192)
T ss_dssp STTTTTSBGGGSCTTTCCCCCC
T ss_pred ChHHcCCChhhCcHhhcCcCCC
Confidence 8888887777777777777653
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.83 E-value=1.4e-20 Score=192.40 Aligned_cols=187 Identities=20% Similarity=0.290 Sum_probs=153.3
Q ss_pred CeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCEEEeec
Q 013710 97 HLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTVTN 176 (437)
Q Consensus 97 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L~ls~ 176 (437)
+|++|+|++|++.+ ++. .+ +++|++|+|++|+|+.+ | ..+++|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~-~l--~~~L~~L~Ls~N~l~~i--p------------------------~~l~~L~~L~Ls~ 109 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPD-NL--PPQITVLEITQNALISL--P------------------------ELPASLEYLDACD 109 (571)
T ss_dssp TCSEEECCSSCCSC-CCS-CC--CTTCSEEECCSSCCSCC--C------------------------CCCTTCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCH-hH--cCCCCEEECcCCCCccc--c------------------------cccCCCCEEEccC
Confidence 89999999999865 663 33 37899999999998754 2 2468999999999
Q ss_pred CCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccccCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCc
Q 013710 177 VPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPS 256 (437)
Q Consensus 177 n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 256 (437)
|.+.. ++. +.+ +|++|++++|.+++ +|. ..++|++|++++|.+++ +|. .+++|++|+|++|.+++ +|.
T Consensus 110 N~l~~--ip~-l~~--~L~~L~Ls~N~l~~-lp~-~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~ 177 (571)
T 3cvr_A 110 NRLST--LPE-LPA--SLKHLDVDNNQLTM-LPE-LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE 177 (571)
T ss_dssp SCCSC--CCC-CCT--TCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC
T ss_pred CCCCC--cch-hhc--CCCEEECCCCcCCC-CCC-cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch
Confidence 99965 444 554 99999999999996 666 55999999999999985 554 67899999999999995 666
Q ss_pred ccCCCcccceeecccccCCCCCccccCCCCCC-------CeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCC
Q 013710 257 SIGDLIALKNVSLASNSLSGSVPESMASLTDM-------VHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFN 329 (437)
Q Consensus 257 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-------~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 329 (437)
|. ++|+.|+|++|+|+ .+|. +.. +| ++|+|++|+|+ .+|..+..+++|++|+|++|.+++.+|..
T Consensus 178 -l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 178 -LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp -CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred -hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 65 89999999999999 5666 554 77 99999999999 56777777999999999999999877766
Q ss_pred cccC
Q 013710 330 ASIL 333 (437)
Q Consensus 330 l~~l 333 (437)
+..+
T Consensus 250 l~~l 253 (571)
T 3cvr_A 250 LSQQ 253 (571)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6554
No 97
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=2.8e-21 Score=188.00 Aligned_cols=227 Identities=18% Similarity=0.186 Sum_probs=171.3
Q ss_pred EEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCC-CCCEEEeecCC
Q 013710 100 SLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFV-NLTDLTVTNVP 178 (437)
Q Consensus 100 ~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~-~L~~L~ls~n~ 178 (437)
++++++|++.+.++ ..+...++|++|++++|.++.+ +.. .-...+..++ +|++|++++|.
T Consensus 2 ~~~ls~n~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~--~~~----------------~l~~~l~~~~~~L~~L~Ls~N~ 62 (362)
T 3goz_A 2 NYKLTLHPGSNPVE-EFTSIPHGVTSLDLSLNNLYSI--STV----------------ELIQAFANTPASVTSLNLSGNS 62 (362)
T ss_dssp EEECCCCTTCCHHH-HHHTSCTTCCEEECTTSCGGGS--CHH----------------HHHHHHHTCCTTCCEEECCSSC
T ss_pred ccccccccchHHHH-HHHhCCCCceEEEccCCCCChH--HHH----------------HHHHHHHhCCCceeEEECcCCC
Confidence 46889999987765 5566667799999999998653 100 0003466787 99999999999
Q ss_pred CCCCch---hHhhcCC-cCccEEEeeCCcccccCCcccc-------cCccEEEccCCcCCCCCChhc----cC-CCCCcE
Q 013710 179 VNASGL---YVIIGNM-HKLRSVTISNANVTGYIPKHLH-------SNLTHVDFSGNQLKGKIPTSI----TL-LENLQH 242 (437)
Q Consensus 179 l~~~~~---~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~-------~~L~~L~Ls~n~l~~~~~~~l----~~-l~~L~~ 242 (437)
+...+. ...+... ++|++|++++|.+++..+..+. ++|++|++++|.+++..+..+ .. .++|++
T Consensus 63 l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 142 (362)
T 3goz_A 63 LGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE
T ss_pred CCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE
Confidence 976643 2233333 8999999999999976665433 589999999999987666544 34 369999
Q ss_pred EEccCCCCCCCCCcc----cCCCc-ccceeecccccCCCCCccc----cCCC-CCCCeeeccCCcCCCc----chhhhcC
Q 013710 243 LNLSSNGLNGEIPSS----IGDLI-ALKNVSLASNSLSGSVPES----MASL-TDMVHLDLSSNQLNGT----IPRFFSD 308 (437)
Q Consensus 243 L~L~~n~l~~~~~~~----l~~l~-~L~~L~L~~n~l~~~~~~~----l~~l-~~L~~L~L~~N~l~~~----~~~~l~~ 308 (437)
|+|++|.+++..... +..++ +|++|++++|++++..+.. +..+ ++|++|+|++|.+++. ++..+..
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 999999998544333 34454 9999999999998766543 3445 5999999999999863 4555655
Q ss_pred -CCCCCEEeccCCcCCCCCC----CCcccCCCCCEEEecCCC
Q 013710 309 -LKKLRYLNLQNNNFHGVLP----FNASILEKLQVFKVGGNT 345 (437)
Q Consensus 309 -l~~L~~L~L~~N~l~~~~~----~~l~~l~~L~~L~l~~N~ 345 (437)
.++|++|+|++|.+++..+ ..+..+++|+.|++++|.
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 4599999999999987544 334667899999999997
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=7.6e-20 Score=163.55 Aligned_cols=162 Identities=20% Similarity=0.218 Sum_probs=134.4
Q ss_pred CCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCcEE
Q 013710 166 FVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHL 243 (437)
Q Consensus 166 l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 243 (437)
.++|++|++++|.+... ....+.++++|++|++++|++++..+..+. ++|++|++++|++++..+..|..+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 45899999999998743 445578899999999999999865554444 899999999999987777778899999999
Q ss_pred EccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCC
Q 013710 244 NLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFH 323 (437)
Q Consensus 244 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~ 323 (437)
++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+.+ .+++|++|+++.|+++
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHS 178 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCT
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCC
Confidence 999999987766778889999999999999987666668889999999999998764 4567899999999999
Q ss_pred CCCCCCcccCCC
Q 013710 324 GVLPFNASILEK 335 (437)
Q Consensus 324 ~~~~~~l~~l~~ 335 (437)
|.+|..++.++.
T Consensus 179 g~ip~~~~~l~~ 190 (208)
T 2o6s_A 179 GVVRNSAGSVAP 190 (208)
T ss_dssp TTBBCTTSSBCT
T ss_pred ceeeccCccccC
Confidence 999887775543
No 99
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.82 E-value=5e-20 Score=162.78 Aligned_cols=172 Identities=24% Similarity=0.275 Sum_probs=129.8
Q ss_pred cEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCC
Q 013710 217 THVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSN 296 (437)
Q Consensus 217 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N 296 (437)
+.+++++|+++ .+|..+. .+|++|++++|.++ .+|..|..+++|++|++++|++++..+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45667777766 4444332 47788888888887 56677888888888888888888766677888888999999999
Q ss_pred cCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCc-ccccccccccccCCCCCCCCCCCC
Q 013710 297 QLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNH-TVLSSKLKLGIAPCDKHGLPISPP 375 (437)
Q Consensus 297 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~-~~~~~~~~~~~~~c~~~~~~~~~p 375 (437)
++++..+..|.++++|++|+|++|+++...+..+..+++|+.|++++|+|.|+|. .|+..|..... -......|..|
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~--~~~~~~~C~~P 166 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEY--KEPGIARCAGP 166 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSS--CCCSCCBEEES
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhcc--CCCCCcCcCCc
Confidence 9987777888999999999999999997666678889999999999999999998 55555554321 12234567888
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 013710 376 PAKDNSSDDSENDSSDDDD 394 (437)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~ 394 (437)
+...+....+...+...+.
T Consensus 167 ~~l~g~~l~~~~~~~~~~~ 185 (193)
T 2wfh_A 167 GEMADKLLLTTPSKKFTCA 185 (193)
T ss_dssp GGGTTCBTTTSCGGGCCC-
T ss_pred hHHCCCCcccCChHHeeeh
Confidence 8888877766655555443
No 100
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=1.7e-18 Score=178.96 Aligned_cols=231 Identities=23% Similarity=0.280 Sum_probs=166.4
Q ss_pred hccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccc
Q 013710 72 ALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSC 151 (437)
Q Consensus 72 ~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~ 151 (437)
.++.|+++++..-. +. ..+. ++|++|+|++|.+. .++. .+++|++|+|++|+++.+ |. .+.++..
T Consensus 41 ~l~~L~ls~n~L~~-lp-~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l--p~----~l~~L~~ 105 (622)
T 3g06_A 41 GNAVLNVGESGLTT-LP-DCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL--PV----LPPGLLE 105 (622)
T ss_dssp CCCEEECCSSCCSC-CC-SCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCC--CC----CCTTCCE
T ss_pred CCcEEEecCCCcCc-cC-hhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcC--CC----CCCCCCE
Confidence 47778876644321 11 1222 68999999999986 5552 678999999999999765 44 1222222
Q ss_pred c----ccCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccccCccEEEccCCcCC
Q 013710 152 I----HSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLK 227 (437)
Q Consensus 152 l----~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~Ls~n~l~ 227 (437)
+ +.+..++. .+.+|++|++++|.+.. ++. .+++|++|++++|.+++ ++. ...+|+.|++++|.++
T Consensus 106 L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~--lp~---~l~~L~~L~Ls~N~l~~-l~~-~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 106 LSIFSNPLTHLPA----LPSGLCKLWIFGNQLTS--LPV---LPPGLQELSVSDNQLAS-LPA-LPSELCKLWAYNNQLT 174 (622)
T ss_dssp EEECSCCCCCCCC----CCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCS
T ss_pred EECcCCcCCCCCC----CCCCcCEEECCCCCCCc--CCC---CCCCCCEEECcCCcCCC-cCC-ccCCCCEEECCCCCCC
Confidence 2 12223322 56788888888888754 222 34788888888888874 343 3378888888888888
Q ss_pred CCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhc
Q 013710 228 GKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFS 307 (437)
Q Consensus 228 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 307 (437)
+ ++ ..+++|+.|++++|.+++ +|. .+++|+.|++++|.++ .++.. +++|++|+|++|++++ +| .
T Consensus 175 ~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~ 238 (622)
T 3g06_A 175 S-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---V 238 (622)
T ss_dssp C-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---C
T ss_pred C-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---C
Confidence 4 44 456889999999999984 443 2478999999999988 44433 4789999999999985 44 5
Q ss_pred CCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCC
Q 013710 308 DLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLC 348 (437)
Q Consensus 308 ~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c 348 (437)
.+++|++|++++|+|+ .+|. .+++|+.|++++|....
T Consensus 239 ~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~~ 275 (622)
T 3g06_A 239 LPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLTR 275 (622)
T ss_dssp CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCCS
T ss_pred CCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCCc
Confidence 6689999999999999 4554 57899999999998763
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=1.5e-19 Score=170.38 Aligned_cols=170 Identities=22% Similarity=0.327 Sum_probs=93.4
Q ss_pred CCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCEEEe
Q 013710 95 FSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTV 174 (437)
Q Consensus 95 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L~l 174 (437)
+++|++|++++|.+.. ++ .+..+++|++|++++|+++.+ . .+..+++|++|++
T Consensus 45 l~~L~~L~l~~~~i~~-~~--~~~~l~~L~~L~L~~n~l~~~----------------------~--~l~~l~~L~~L~l 97 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKS-VQ--GIQYLPNVTKLFLNGNKLTDI----------------------K--PLANLKNLGWLFL 97 (291)
T ss_dssp HHTCCEEECTTSCCCC-CT--TGGGCTTCCEEECCSSCCCCC----------------------G--GGTTCTTCCEEEC
T ss_pred cCcccEEEccCCCccc-Ch--hHhcCCCCCEEEccCCccCCC----------------------c--ccccCCCCCEEEC
Confidence 4566666666666543 22 366666666666666665432 0 1344555555555
Q ss_pred ecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccccCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCC
Q 013710 175 TNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEI 254 (437)
Q Consensus 175 s~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 254 (437)
++|.+.. ++ .+..+++|++|++++|+++ +. ..+..+++|++|++++|.+++.
T Consensus 98 ~~n~l~~--~~-~l~~l~~L~~L~L~~n~i~----------------------~~--~~l~~l~~L~~L~l~~n~l~~~- 149 (291)
T 1h6t_A 98 DENKVKD--LS-SLKDLKKLKSLSLEHNGIS----------------------DI--NGLVHLPQLESLYLGNNKITDI- 149 (291)
T ss_dssp CSSCCCC--GG-GGTTCTTCCEEECTTSCCC----------------------CC--GGGGGCTTCCEEECCSSCCCCC-
T ss_pred CCCcCCC--Ch-hhccCCCCCEEECCCCcCC----------------------CC--hhhcCCCCCCEEEccCCcCCcc-
Confidence 5555532 11 2444455555555544444 22 2345556666666666666533
Q ss_pred CcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCC
Q 013710 255 PSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHG 324 (437)
Q Consensus 255 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 324 (437)
..+..+++|++|++++|++++..+ +..+++|++|++++|.+++. + .+..+++|+.|++++|+++.
T Consensus 150 -~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 150 -TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred -hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 445566666666666666654332 55666666666666666532 2 25666666666666666653
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=7.4e-19 Score=179.67 Aligned_cols=181 Identities=22% Similarity=0.325 Sum_probs=151.4
Q ss_pred CCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeC
Q 013710 122 TLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISN 201 (437)
Q Consensus 122 ~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~ 201 (437)
+|++|++++|+++.+ |..+ .++|++|++++|.+.. ++ ..+++|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~l--p~~l-----------------------~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~ 109 (571)
T 3cvr_A 60 QFSELQLNRLNLSSL--PDNL-----------------------PPQITVLEITQNALIS--LP---ELPASLEYLDACD 109 (571)
T ss_dssp TCSEEECCSSCCSCC--CSCC-----------------------CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCS
T ss_pred CccEEEeCCCCCCcc--CHhH-----------------------cCCCCEEECcCCCCcc--cc---cccCCCCEEEccC
Confidence 899999999998754 4321 3689999999999973 44 5578999999999
Q ss_pred CcccccCCcccccCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccc
Q 013710 202 ANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPES 281 (437)
Q Consensus 202 n~l~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 281 (437)
|.+++ +|. +..+|++|++++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|++++ +|.
T Consensus 110 N~l~~-ip~-l~~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~- 177 (571)
T 3cvr_A 110 NRLST-LPE-LPASLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE- 177 (571)
T ss_dssp SCCSC-CCC-CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-
T ss_pred CCCCC-cch-hhcCCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-
Confidence 99996 777 66799999999999996 555 68999999999999995 555 57899999999999996 666
Q ss_pred cCCCCCCCeeeccCCcCCCcchhhhcCCCCC-------CEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCc
Q 013710 282 MASLTDMVHLDLSSNQLNGTIPRFFSDLKKL-------RYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNH 351 (437)
Q Consensus 282 l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L-------~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~ 351 (437)
+. ++|++|+|++|+|+ .+|. +.. +| ++|+|++|+|+ .+|..+..+++|+.|++++|++.+..+
T Consensus 178 l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 178 LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 65 89999999999999 5555 554 67 99999999999 678888889999999999999876543
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=3.8e-19 Score=167.55 Aligned_cols=173 Identities=21% Similarity=0.344 Sum_probs=149.5
Q ss_pred hcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCC
Q 013710 163 LSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENL 240 (437)
Q Consensus 163 ~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L 240 (437)
...+++|+.|++++|.+... ..+..+++|++|++++|++++..+ +. ++|++|++++|.+++ + ..+..+++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~---~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC---TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTC
T ss_pred hhhcCcccEEEccCCCcccC---hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCC
Confidence 45788999999999998654 347889999999999999996554 43 899999999999985 3 358999999
Q ss_pred cEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCC
Q 013710 241 QHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNN 320 (437)
Q Consensus 241 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N 320 (437)
++|++++|.+++. ..+..+++|++|++++|++++. ..+..+++|++|++++|++++..+ +..+++|++|++++|
T Consensus 115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCC
Confidence 9999999999854 5688999999999999999954 578899999999999999997655 899999999999999
Q ss_pred cCCCCCCCCcccCCCCCEEEecCCCCCCcC
Q 013710 321 NFHGVLPFNASILEKLQVFKVGGNTNLCYN 350 (437)
Q Consensus 321 ~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~ 350 (437)
++++. + .+..+++|+.|++++|+..+..
T Consensus 189 ~i~~l-~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 189 HISDL-R-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CCCBC-G-GGTTCTTCSEEEEEEEEEECCC
T ss_pred cCCCC-h-hhccCCCCCEEECcCCcccCCc
Confidence 99964 4 4888999999999999866543
No 104
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=3.5e-19 Score=172.36 Aligned_cols=219 Identities=17% Similarity=0.144 Sum_probs=167.4
Q ss_pred eEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCEEEeecCC
Q 013710 99 LSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTVTNVP 178 (437)
Q Consensus 99 ~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L~ls~n~ 178 (437)
+.++.++++++ .+| ..+ .+++++|+|++|+|+.+ +...|.++++|++|+|++|.
T Consensus 12 ~~v~C~~~~Lt-~iP-~~l--~~~l~~L~Ls~N~i~~i----------------------~~~~f~~l~~L~~L~Ls~N~ 65 (350)
T 4ay9_X 12 RVFLCQESKVT-EIP-SDL--PRNAIELRFVLTKLRVI----------------------QKGAFSGFGDLEKIEISQND 65 (350)
T ss_dssp TEEEEESTTCC-SCC-TTC--CTTCSEEEEESCCCSEE----------------------CTTSSTTCTTCCEEEEECCT
T ss_pred CEEEecCCCCC-ccC-cCc--CCCCCEEEccCCcCCCc----------------------CHHHHcCCCCCCEEECcCCC
Confidence 46778888875 566 334 36899999999998743 33467899999999999999
Q ss_pred CCCCchhHhhcCCcCccE-EEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCcEEEccC-CCCCCCC
Q 013710 179 VNASGLYVIIGNMHKLRS-VTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSS-NGLNGEI 254 (437)
Q Consensus 179 l~~~~~~~~l~~l~~L~~-L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~ 254 (437)
+........|.+++++++ +.+.+|+++...+..+. ++|++|++++|+++...+..+....++..|++.+ +.+....
T Consensus 66 i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~ 145 (350)
T 4ay9_X 66 VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145 (350)
T ss_dssp TCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEEC
T ss_pred CCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccc
Confidence 864433456888888775 66778999976676666 8999999999999977776777788899999966 5676555
Q ss_pred CcccCCCc-ccceeecccccCCCCCccccCCCCCCCeeeccC-CcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCccc
Q 013710 255 PSSIGDLI-ALKNVSLASNSLSGSVPESMASLTDMVHLDLSS-NQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASI 332 (437)
Q Consensus 255 ~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~-N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 332 (437)
+..|..+. .++.|++++|+|+. ++.......+|++|++++ |.++...++.|.++++|++|++++|+|+...+..
T Consensus 146 ~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--- 221 (350)
T 4ay9_X 146 RNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--- 221 (350)
T ss_dssp TTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---
T ss_pred ccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---
Confidence 55676664 68999999999984 444444567899999985 7777665678899999999999999999544433
Q ss_pred CCCCCEEEecCCCCC
Q 013710 333 LEKLQVFKVGGNTNL 347 (437)
Q Consensus 333 l~~L~~L~l~~N~~~ 347 (437)
+.+|+.|.+.++..+
T Consensus 222 ~~~L~~L~~l~~~~l 236 (350)
T 4ay9_X 222 LENLKKLRARSTYNL 236 (350)
T ss_dssp CTTCCEEECTTCTTC
T ss_pred hccchHhhhccCCCc
Confidence 556677776665543
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=1.8e-19 Score=185.99 Aligned_cols=193 Identities=18% Similarity=0.267 Sum_probs=127.8
Q ss_pred hhhhhccccccccCCCCCccccCCCCCCCCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccc
Q 013710 68 KQIRALQSLNIPSKSACSLYKCDSSKPFSHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLL 147 (437)
Q Consensus 68 ~~~~~L~~l~~~~~~~c~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~ 147 (437)
..+..+..+++.....-.. .....+.+|++|++++|.+.. ++ .+..+++|++|+|++|+++.+ +
T Consensus 18 ~~l~~l~~l~l~~~~i~~~---~~~~~L~~L~~L~l~~n~i~~-l~--~l~~l~~L~~L~Ls~N~l~~~--~-------- 81 (605)
T 1m9s_A 18 DAFAETIKDNLKKKSVTDA---VTQNELNSIDQIIANNSDIKS-VQ--GIQYLPNVTKLFLNGNKLTDI--K-------- 81 (605)
T ss_dssp HHHHHHHHHHTTCSCTTSE---ECHHHHTTCCCCBCTTCCCCC-CT--TGGGCTTCCEEECTTSCCCCC--G--------
T ss_pred HHHHHHHHHhccCCCcccc---cchhcCCCCCEEECcCCCCCC-Ch--HHccCCCCCEEEeeCCCCCCC--h--------
Confidence 3455566666544222111 123346678888888888753 33 578888888888888887643 1
Q ss_pred cccccccCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCc
Q 013710 148 SFSCIHSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQ 225 (437)
Q Consensus 148 ~l~~l~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~ 225 (437)
.+..+++|+.|+|++|.+... ..+..+++|++|+|++|.+.+. + .+. ++|+.|+|++|.
T Consensus 82 --------------~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~l-~-~l~~l~~L~~L~Ls~N~ 142 (605)
T 1m9s_A 82 --------------PLTNLKNLGWLFLDENKIKDL---SSLKDLKKLKSLSLEHNGISDI-N-GLVHLPQLESLYLGNNK 142 (605)
T ss_dssp --------------GGGGCTTCCEEECCSSCCCCC---TTSTTCTTCCEEECTTSCCCCC-G-GGGGCTTCSEEECCSSC
T ss_pred --------------hhccCCCCCEEECcCCCCCCC---hhhccCCCCCEEEecCCCCCCC-c-cccCCCccCEEECCCCc
Confidence 155777888888888877542 2477777888888888877743 2 222 677777777777
Q ss_pred CCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCc
Q 013710 226 LKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGT 301 (437)
Q Consensus 226 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 301 (437)
+++. ..+..+++|+.|+|++|.+++..+ +..+++|+.|+|++|++.+. ..+..+++|+.|+|++|.+.+.
T Consensus 143 l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 143 ITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred cCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 7644 566777777777777777765443 66777777777777777643 3466777777777777777643
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=157.07 Aligned_cols=153 Identities=23% Similarity=0.269 Sum_probs=134.7
Q ss_pred CEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcc-cc--cCccEEEccCCcCCCCCChhccCCCCCcEEEcc
Q 013710 170 TDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKH-LH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLS 246 (437)
Q Consensus 170 ~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~-~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 246 (437)
+.+++++|.+.. ++..+. ..+++|++++|++++..+.. +. ++|++|++++|++++..+..|.++++|++|+|+
T Consensus 14 ~~l~~s~n~l~~--iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNK--IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSS--CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCccc--CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 589999998864 343332 46789999999999775543 33 899999999999998888899999999999999
Q ss_pred CCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCC
Q 013710 247 SNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVL 326 (437)
Q Consensus 247 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 326 (437)
+|.+++..+..|..+++|++|++++|++++..+..+..+++|++|+|++|++++..|..|..+++|++|++++|.+....
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 99999888888999999999999999999888899999999999999999999888999999999999999999998543
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=5.9e-19 Score=171.52 Aligned_cols=156 Identities=22% Similarity=0.185 Sum_probs=130.6
Q ss_pred CCCCEEEeecCCCCCCchhHhhc-CCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCcEE
Q 013710 167 VNLTDLTVTNVPVNASGLYVIIG-NMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHL 243 (437)
Q Consensus 167 ~~L~~L~ls~n~l~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 243 (437)
..++.|++++|.+... ....+. ++++|++|+|++|++++..+..+. ++|++|+|++|+++...+..|.++++|++|
T Consensus 39 ~~l~~L~Ls~N~l~~l-~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 39 SYTALLDLSHNNLSRL-RAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TTCSEEECCSSCCCEE-CTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCCCCcc-ChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 3578999999998654 334465 889999999999999976666665 899999999999997777789999999999
Q ss_pred EccCCCCCCCCCcccCCCcccceeecccccCCCCCcccc---CCCCCCCeeeccCCcCCCcchhhhcCCCC--CCEEecc
Q 013710 244 NLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESM---ASLTDMVHLDLSSNQLNGTIPRFFSDLKK--LRYLNLQ 318 (437)
Q Consensus 244 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~N~l~~~~~~~l~~l~~--L~~L~L~ 318 (437)
+|++|.+++..+..|..+++|++|+|++|++++..+..+ ..+++|++|+|++|+|++..+..+..++. |+.|+|+
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~ 197 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH 197 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECC
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEec
Confidence 999999997778889999999999999999996555555 56899999999999999777778888876 4889999
Q ss_pred CCcCC
Q 013710 319 NNNFH 323 (437)
Q Consensus 319 ~N~l~ 323 (437)
+|.+.
T Consensus 198 ~N~~~ 202 (361)
T 2xot_A 198 NNPLE 202 (361)
T ss_dssp SSCEE
T ss_pred CCCcc
Confidence 99876
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=1.7e-18 Score=156.24 Aligned_cols=151 Identities=19% Similarity=0.261 Sum_probs=130.4
Q ss_pred CEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCcEEEccC
Q 013710 170 TDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSS 247 (437)
Q Consensus 170 ~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 247 (437)
+.++.+++.+.. ++..+. ++|++|++++|++++..+..+. ++|++|+|++|++++..+..|.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~~--iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTE--IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSS--CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCc--CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 567777777753 333232 6899999999999876665665 8999999999999988889999999999999999
Q ss_pred CCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCC
Q 013710 248 NGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHG 324 (437)
Q Consensus 248 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 324 (437)
|.++...+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|.+..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 99996666678899999999999999998888899999999999999999998888889999999999999999874
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=3.2e-18 Score=176.66 Aligned_cols=147 Identities=23% Similarity=0.352 Sum_probs=70.9
Q ss_pred cCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCc
Q 013710 164 SRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQ 241 (437)
Q Consensus 164 ~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~ 241 (437)
..+++|+.|+|++|.+... +. +..+++|++|+|++|.+.+ ++ .+. ++|+.|+|++|.+.+. ..+..+++|+
T Consensus 62 ~~l~~L~~L~Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~ 134 (605)
T 1m9s_A 62 QYLPNVTKLFLNGNKLTDI--KP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLE 134 (605)
T ss_dssp GGCTTCCEEECTTSCCCCC--GG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCS
T ss_pred ccCCCCCEEEeeCCCCCCC--hh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccC
Confidence 3445555555555555332 11 4455555555555555543 22 122 4555555555555432 2344555555
Q ss_pred EEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCc
Q 013710 242 HLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNN 321 (437)
Q Consensus 242 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~ 321 (437)
.|+|++|.+++. ..+..+++|+.|+|++|++.+..+ +..+++|++|+|++|++.+. ..+..+++|+.|+|++|+
T Consensus 135 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 135 SLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp EEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEE
T ss_pred EEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCc
Confidence 555555555432 344555555555555555553333 44555555555555555432 234455555555555555
Q ss_pred CC
Q 013710 322 FH 323 (437)
Q Consensus 322 l~ 323 (437)
+.
T Consensus 209 l~ 210 (605)
T 1m9s_A 209 CL 210 (605)
T ss_dssp EE
T ss_pred Cc
Confidence 54
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=3.2e-18 Score=151.62 Aligned_cols=149 Identities=21% Similarity=0.292 Sum_probs=106.6
Q ss_pred CCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCccccee
Q 013710 190 NMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNV 267 (437)
Q Consensus 190 ~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 267 (437)
.+++|++|++++|.+. .++ .+. ++|++|++++|.++ ....+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3455666666666665 233 222 66666666666554 22467778888888888888876667778888888888
Q ss_pred ecccccCCCCCccccCCCCCCCeeeccCCc-CCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCC
Q 013710 268 SLASNSLSGSVPESMASLTDMVHLDLSSNQ-LNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTN 346 (437)
Q Consensus 268 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~ 346 (437)
++++|++++..+..+..+++|++|++++|+ ++ .++ .+..+++|++|++++|++++. + .+..+++|+.|++++|+.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence 888888887677778888888888888887 55 444 577888888888888888853 3 577788888888888863
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=8.3e-18 Score=152.68 Aligned_cols=153 Identities=22% Similarity=0.254 Sum_probs=131.3
Q ss_pred CCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCcEEEc
Q 013710 168 NLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNL 245 (437)
Q Consensus 168 ~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 245 (437)
..+.++.+++.+.. ++..+ .++|++|+|++|.+++..+..+. ++|++|+|++|+++...+..|..+++|++|+|
T Consensus 20 s~~~v~c~~~~l~~--ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRSKRHAS--VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp ETTEEECTTSCCSS--CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred eCCEeEccCCCcCc--cCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 35678888877753 33322 27899999999999987777665 89999999999998766677899999999999
Q ss_pred cCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCC
Q 013710 246 SSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGV 325 (437)
Q Consensus 246 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 325 (437)
++|.+++..+..|..+++|++|++++|+++ .+|..+..+++|++|+|++|++++..+..+..+++|++|++++|.+...
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 999999777777899999999999999999 7788889999999999999999987778899999999999999998854
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=2.2e-18 Score=152.76 Aligned_cols=153 Identities=22% Similarity=0.349 Sum_probs=130.1
Q ss_pred hcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCC
Q 013710 163 LSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENL 240 (437)
Q Consensus 163 ~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L 240 (437)
...+++|++|++++|.+.. ++ .+..+++|++|++++|.+... + .+. ++|++|++++|.+++..+..+..+++|
T Consensus 40 ~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTD--LT-GIEYAHNIKDLTINNIHATNY-N-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHHTCCEEEEESSCCSC--CT-TGGGCTTCSEEEEESCCCSCC-G-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hhhcCCccEEeccCCCccC--hH-HHhcCCCCCEEEccCCCCCcc-h-hhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 3577899999999999974 33 588899999999999977632 2 343 899999999999997778889999999
Q ss_pred cEEEccCCCCCCCCCcccCCCcccceeeccccc-CCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccC
Q 013710 241 QHLNLSSNGLNGEIPSSIGDLIALKNVSLASNS-LSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQN 319 (437)
Q Consensus 241 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~ 319 (437)
++|++++|.+++..+..+..+++|++|++++|+ ++ .++ .+..+++|++|++++|++++. + .+..+++|++|++++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECB
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeC
Confidence 999999999997778889999999999999998 66 455 688999999999999999864 3 688999999999999
Q ss_pred CcCCC
Q 013710 320 NNFHG 324 (437)
Q Consensus 320 N~l~~ 324 (437)
|++.+
T Consensus 191 N~i~~ 195 (197)
T 4ezg_A 191 QTIGG 195 (197)
T ss_dssp C----
T ss_pred cccCC
Confidence 99864
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=2.3e-18 Score=159.71 Aligned_cols=171 Identities=20% Similarity=0.299 Sum_probs=136.6
Q ss_pred CCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCcE
Q 013710 165 RFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQH 242 (437)
Q Consensus 165 ~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 242 (437)
.+.++..++++++.+.... .+..+++|++|++++|+++. ++ .+. ++|++|++++|++++..+ +..+++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~---~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV---SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE---CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCccccc---chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence 3455667778888776432 46677899999999998884 44 333 889999999999985443 889999999
Q ss_pred EEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcC
Q 013710 243 LNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNF 322 (437)
Q Consensus 243 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l 322 (437)
|++++|++++ ++. +.. .+|++|++++|++++. ..+..+++|++|+|++|++++. + .+..+++|++|++++|++
T Consensus 90 L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 90 LSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp EECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCC
T ss_pred EECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcC
Confidence 9999999985 433 333 8999999999999853 3588899999999999999864 3 688899999999999999
Q ss_pred CCCCCCCcccCCCCCEEEecCCCCCCcCc
Q 013710 323 HGVLPFNASILEKLQVFKVGGNTNLCYNH 351 (437)
Q Consensus 323 ~~~~~~~l~~l~~L~~L~l~~N~~~c~~~ 351 (437)
++. ..+..+++|+.|++++|++.+...
T Consensus 163 ~~~--~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 163 TNT--GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp CBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred cch--HHhccCCCCCEEeCCCCcccCCcc
Confidence 976 567889999999999998777643
No 114
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=3.4e-18 Score=150.87 Aligned_cols=159 Identities=21% Similarity=0.298 Sum_probs=124.8
Q ss_pred cEEEeeCCcccccCCcccccCccEEEccCCcCCCCCCh-hccCCCCCcEEEccCCCCCCCCCcccCCCcccceeeccccc
Q 013710 195 RSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPT-SITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNS 273 (437)
Q Consensus 195 ~~L~L~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 273 (437)
+++++++|+++ .+|..+..++++|++++|.+++..+. .|..+++|++|+|++|.+++..|..|..+++|++|+|++|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcC-cCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 67888888886 67777777899999999998866654 48889999999999999998878889999999999999999
Q ss_pred CCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCccc
Q 013710 274 LSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNHTV 353 (437)
Q Consensus 274 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~~~ 353 (437)
+++..+..|.++++|++|+|++|++++..|..+..+++|++|++++|.+++..+.. .....++...+.++...|..+..
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~-~~~~~l~~~~~~~~~~~C~~P~~ 168 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPSK 168 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSSTT
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcch-HHHHHHHHcCCCCCCCCCCCChH
Confidence 99777777889999999999999999888888999999999999999988654311 00011222234556667776544
Q ss_pred cc
Q 013710 354 LS 355 (437)
Q Consensus 354 ~~ 355 (437)
+.
T Consensus 169 l~ 170 (192)
T 1w8a_A 169 VR 170 (192)
T ss_dssp TT
T ss_pred Hc
Confidence 33
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=1.8e-18 Score=160.45 Aligned_cols=168 Identities=20% Similarity=0.273 Sum_probs=95.8
Q ss_pred CeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCEEEeec
Q 013710 97 HLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTVTN 176 (437)
Q Consensus 97 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L~ls~ 176 (437)
+++.++++++.+.+. + .+..+++|++|++++|+++.+ + .+..+++|++|++++
T Consensus 20 ~l~~l~l~~~~i~~~-~--~~~~l~~L~~L~l~~n~i~~l--~----------------------~l~~l~~L~~L~L~~ 72 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDL-V--SQKELSGVQNFNGDNSNIQSL--A----------------------GMQFFTNLKELHLSH 72 (263)
T ss_dssp HHHHHHHTCSCTTSE-E--CHHHHTTCSEEECTTSCCCCC--T----------------------TGGGCTTCCEEECCS
T ss_pred HHHHHHhcCCCcccc-c--chhhcCcCcEEECcCCCcccc--h----------------------HHhhCCCCCEEECCC
Confidence 444455555554322 1 345556666666666655432 1 133455566666666
Q ss_pred CCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccccCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCc
Q 013710 177 VPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPS 256 (437)
Q Consensus 177 n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 256 (437)
|.+... +. +.++++|++|++++|++++. +.....+|++|++++|++++. ..+..+++|++|++++|++++. .
T Consensus 73 N~i~~~--~~-l~~l~~L~~L~L~~N~l~~l-~~~~~~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~ 144 (263)
T 1xeu_A 73 NQISDL--SP-LKDLTKLEELSVNRNRLKNL-NGIPSACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--V 144 (263)
T ss_dssp SCCCCC--GG-GTTCSSCCEEECCSSCCSCC-TTCCCSSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--G
T ss_pred CccCCC--hh-hccCCCCCEEECCCCccCCc-CccccCcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--h
Confidence 655432 22 66667777777777776642 221116666666666666642 2466667777777777776643 2
Q ss_pred ccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCc
Q 013710 257 SIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGT 301 (437)
Q Consensus 257 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 301 (437)
.+..+++|++|++++|++++. ..+..+++|++|++++|.+.+.
T Consensus 145 ~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 145 MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 466666666666666666643 4456666666666666666543
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=1.1e-19 Score=186.48 Aligned_cols=152 Identities=20% Similarity=0.296 Sum_probs=119.3
Q ss_pred hhHhhcCCcCccEEE-eeCCcccccCCc---------ccc-cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCC
Q 013710 184 LYVIIGNMHKLRSVT-ISNANVTGYIPK---------HLH-SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNG 252 (437)
Q Consensus 184 ~~~~l~~l~~L~~L~-L~~n~l~~~~~~---------~~~-~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 252 (437)
.+..++.+++|+.|+ ++.|.+.. ++. .+. ..|+.|+|++|.+++ +|. |..+++|+.|+|++|.++
T Consensus 401 ~~~~l~~l~~L~~L~~l~~n~~~~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~- 476 (567)
T 1dce_A 401 EKETLQYFSTLKAVDPMRAAYLDD-LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR- 476 (567)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHH-HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-
T ss_pred CHHHHHHHHhcccCcchhhcccch-hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-
Confidence 445566666677666 44443321 111 011 468999999999985 565 899999999999999998
Q ss_pred CCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcc-hhhhcCCCCCCEEeccCCcCCCCCCCC--
Q 013710 253 EIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTI-PRFFSDLKKLRYLNLQNNNFHGVLPFN-- 329 (437)
Q Consensus 253 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~~~-- 329 (437)
.+|..++.+++|+.|+|++|++++ +| .+..+++|++|+|++|++++.. |..+..+++|+.|+|++|++++..+..
T Consensus 477 ~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 554 (567)
T 1dce_A 477 ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER 554 (567)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTH
T ss_pred ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHH
Confidence 788899999999999999999995 66 7899999999999999999776 889999999999999999999765532
Q ss_pred -cccCCCCCEEEe
Q 013710 330 -ASILEKLQVFKV 341 (437)
Q Consensus 330 -l~~l~~L~~L~l 341 (437)
+..+++|+.|++
T Consensus 555 l~~~lp~L~~L~l 567 (567)
T 1dce_A 555 LAEMLPSVSSILT 567 (567)
T ss_dssp HHHHCTTCSEEEC
T ss_pred HHHHCcccCccCC
Confidence 234788888864
No 117
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=5.1e-19 Score=183.05 Aligned_cols=184 Identities=16% Similarity=0.134 Sum_probs=127.7
Q ss_pred hcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeC-----------CcccccCCcccc---cCccEEEccCCcCCC
Q 013710 163 LSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISN-----------ANVTGYIPKHLH---SNLTHVDFSGNQLKG 228 (437)
Q Consensus 163 ~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~-----------n~l~~~~~~~~~---~~L~~L~Ls~n~l~~ 228 (437)
+..+++|++|+++ +.+...++...+..+++|++|++++ +.+++.....+. ++|++|+++.|.+++
T Consensus 314 ~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~ 392 (592)
T 3ogk_B 314 IQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN 392 (592)
T ss_dssp HTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH
T ss_pred HHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH
Confidence 5778888888888 4454444656667788888998883 455543222222 788899988888876
Q ss_pred CCChhccC-CCCCcEEEcc----CCCCCCC-----CCcccCCCcccceeeccccc--CCCCCcccc-CCCCCCCeeeccC
Q 013710 229 KIPTSITL-LENLQHLNLS----SNGLNGE-----IPSSIGDLIALKNVSLASNS--LSGSVPESM-ASLTDMVHLDLSS 295 (437)
Q Consensus 229 ~~~~~l~~-l~~L~~L~L~----~n~l~~~-----~~~~l~~l~~L~~L~L~~n~--l~~~~~~~l-~~l~~L~~L~L~~ 295 (437)
.....+.. +++|++|+++ .|.+++. ++..+.++++|++|++++|. +++.....+ ..+++|++|+|++
T Consensus 393 ~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~ 472 (592)
T 3ogk_B 393 ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGY 472 (592)
T ss_dssp HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECS
T ss_pred HHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccC
Confidence 55555554 7889999886 5666643 22235667889999987543 554433333 3478899999999
Q ss_pred CcCCC-cchhhhcCCCCCCEEeccCCcCCCC-CCCCcccCCCCCEEEecCCCCC
Q 013710 296 NQLNG-TIPRFFSDLKKLRYLNLQNNNFHGV-LPFNASILEKLQVFKVGGNTNL 347 (437)
Q Consensus 296 N~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L~l~~N~~~ 347 (437)
|++++ .++..+.++++|++|++++|.+++. ++.....+++|++|++++|+..
T Consensus 473 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 473 VGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp CCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred CCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 98875 3455667888999999999987654 3333456888999999999844
No 118
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=4.3e-19 Score=183.62 Aligned_cols=295 Identities=13% Similarity=0.072 Sum_probs=185.9
Q ss_pred hhhhccccccccCCCCC-cc--ccCCCCCCCCeeEEEccCCCCCC----cCChhhhCCCCCCCEEecccCCCCCCCCCch
Q 013710 69 QIRALQSLNIPSKSACS-LY--KCDSSKPFSHLLSLRLSNCSDDI----SLSSTALKSLSTLQNLTFFNCPIAPIHFPND 141 (437)
Q Consensus 69 ~~~~L~~l~~~~~~~c~-~~--~~~~~~~l~~L~~L~Ls~n~~~~----~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~ 141 (437)
.+++|+.|++.++..-. +. ......++++|++|++++|.+.+ .++ ..+.++++|++|++++|.+..+ +..
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~l--~~~ 238 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLE-TIARNCRSLVSVKVGDFEILEL--VGF 238 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHH-HHHHHCTTCCEEECSSCBGGGG--HHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHH-HHHhhCCCCcEEeccCccHHHH--HHH
Confidence 44678888876643211 10 01122345678888888777651 121 3455677888888887765432 111
Q ss_pred h-----------------------hhccccccccccCC------CCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCc
Q 013710 142 L-----------------------SLSLLSFSCIHSLH------HLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMH 192 (437)
Q Consensus 142 l-----------------------~~~l~~l~~l~~l~------~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~ 192 (437)
+ ...+..+.++..+. ..-...+..+++|++|++++|.+....+...+.+++
T Consensus 239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~ 318 (592)
T 3ogk_B 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP 318 (592)
T ss_dssp HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence 1 01111111111110 011124567789999999999976655656678899
Q ss_pred CccEEEeeCCcccccCCcccc---cCccEEEccC-----------CcCCCC-CChhccCCCCCcEEEccCCCCCCCCCcc
Q 013710 193 KLRSVTISNANVTGYIPKHLH---SNLTHVDFSG-----------NQLKGK-IPTSITLLENLQHLNLSSNGLNGEIPSS 257 (437)
Q Consensus 193 ~L~~L~L~~n~l~~~~~~~~~---~~L~~L~Ls~-----------n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 257 (437)
+|++|+++ +.+.+.....+. ++|++|++++ |.+++. +...+..+++|++|+++.|.+++.....
T Consensus 319 ~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~ 397 (592)
T 3ogk_B 319 NLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLES 397 (592)
T ss_dssp TCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHH
T ss_pred CCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHH
Confidence 99999999 444433333332 7899999993 555532 2223456899999999999998655555
Q ss_pred cCC-Ccccceeecc----cccCCCC-----CccccCCCCCCCeeeccCCc--CCCcchhhhc-CCCCCCEEeccCCcCCC
Q 013710 258 IGD-LIALKNVSLA----SNSLSGS-----VPESMASLTDMVHLDLSSNQ--LNGTIPRFFS-DLKKLRYLNLQNNNFHG 324 (437)
Q Consensus 258 l~~-l~~L~~L~L~----~n~l~~~-----~~~~l~~l~~L~~L~L~~N~--l~~~~~~~l~-~l~~L~~L~L~~N~l~~ 324 (437)
+.. +++|++|+++ .|.+++. ++..+.++++|++|++++|. +++.....+. .+++|++|++++|++++
T Consensus 398 l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 477 (592)
T 3ogk_B 398 IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD 477 (592)
T ss_dssp HHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSH
T ss_pred HHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCH
Confidence 554 8899999996 6677753 33446678999999998543 6655544443 48899999999999986
Q ss_pred C-CCCCcccCCCCCEEEecCCCCCCcC--c---ccccccccccccCCCCC
Q 013710 325 V-LPFNASILEKLQVFKVGGNTNLCYN--H---TVLSSKLKLGIAPCDKH 368 (437)
Q Consensus 325 ~-~~~~l~~l~~L~~L~l~~N~~~c~~--~---~~~~~~~~~~~~~c~~~ 368 (437)
. ++..+..+++|++|++++|+. .+. . .....+..+.+..|...
T Consensus 478 ~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 478 EGLMEFSRGCPNLQKLEMRGCCF-SERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHHHHHHTCCTTCCEEEEESCCC-BHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred HHHHHHHhcCcccCeeeccCCCC-cHHHHHHHHHhcCccCeeECcCCcCC
Confidence 3 344456789999999999994 322 1 11334455566666543
No 119
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.71 E-value=1.1e-16 Score=139.22 Aligned_cols=133 Identities=25% Similarity=0.262 Sum_probs=103.8
Q ss_pred ccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccC
Q 013710 216 LTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSS 295 (437)
Q Consensus 216 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 295 (437)
.+.+++++|+++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|+|++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 356666777666 334332 25778888888887766556677788888888888888766666678888899999999
Q ss_pred CcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCc
Q 013710 296 NQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNH 351 (437)
Q Consensus 296 N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~ 351 (437)
|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.|+|+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 99887777778888999999999999986666666788999999999999999886
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=140.92 Aligned_cols=128 Identities=23% Similarity=0.348 Sum_probs=116.1
Q ss_pred cEEEeeCCcccccCCcccccCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccC
Q 013710 195 RSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSL 274 (437)
Q Consensus 195 ~~L~L~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 274 (437)
+++++++|+++ .+|..+..+|++|++++|.++ .+|..|.++++|++|+|++|.+++..+..|.++++|++|+|++|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCS-SCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCC-cCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 57888999888 677777789999999999998 6778999999999999999999988788899999999999999999
Q ss_pred CCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCC
Q 013710 275 SGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHG 324 (437)
Q Consensus 275 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 324 (437)
++..+..|..+++|++|+|++|+++...+..|..+++|++|++++|.+..
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 98888889999999999999999997777789999999999999999874
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.69 E-value=1.7e-16 Score=136.62 Aligned_cols=130 Identities=22% Similarity=0.283 Sum_probs=89.3
Q ss_pred cCccEEEeeCCccc-ccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceee
Q 013710 192 HKLRSVTISNANVT-GYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVS 268 (437)
Q Consensus 192 ~~L~~L~L~~n~l~-~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 268 (437)
++|++|++++|.++ +.++..+. ++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55666666666665 44454433 6666666666666644 5667777777777777777765666666677777777
Q ss_pred cccccCCCCC-ccccCCCCCCCeeeccCCcCCCcch---hhhcCCCCCCEEeccCCcCC
Q 013710 269 LASNSLSGSV-PESMASLTDMVHLDLSSNQLNGTIP---RFFSDLKKLRYLNLQNNNFH 323 (437)
Q Consensus 269 L~~n~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~---~~l~~l~~L~~L~L~~N~l~ 323 (437)
+++|++++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 7777777432 2567777778888888887775544 46777778888888877776
No 122
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.68 E-value=4.4e-16 Score=135.29 Aligned_cols=133 Identities=23% Similarity=0.294 Sum_probs=114.3
Q ss_pred ccEEEeeCCcccccCCcccccCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeeccccc
Q 013710 194 LRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNS 273 (437)
Q Consensus 194 L~~L~L~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 273 (437)
.+.+++++++++ .+|..+.++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|+
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEecCCCCc-cCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 467888888887 5666666899999999999987777778899999999999999997766778899999999999999
Q ss_pred CCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCC
Q 013710 274 LSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLP 327 (437)
Q Consensus 274 l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~ 327 (437)
+++..+..+..+++|++|+|++|++++..+..+..+++|++|++++|.+.+..+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 997777778899999999999999997777777889999999999999886543
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.68 E-value=7.3e-17 Score=138.97 Aligned_cols=132 Identities=23% Similarity=0.275 Sum_probs=117.6
Q ss_pred cCccEEEccCCcCC-CCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeee
Q 013710 214 SNLTHVDFSGNQLK-GKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLD 292 (437)
Q Consensus 214 ~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 292 (437)
++|++|++++|.++ +.++..+..+++|++|++++|.+++. ..+..+++|++|++++|++.+.++..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 78999999999998 67888889999999999999999865 7889999999999999999977888888899999999
Q ss_pred ccCCcCCCcc-hhhhcCCCCCCEEeccCCcCCCCCC---CCcccCCCCCEEEecCCCCC
Q 013710 293 LSSNQLNGTI-PRFFSDLKKLRYLNLQNNNFHGVLP---FNASILEKLQVFKVGGNTNL 347 (437)
Q Consensus 293 L~~N~l~~~~-~~~l~~l~~L~~L~L~~N~l~~~~~---~~l~~l~~L~~L~l~~N~~~ 347 (437)
|++|++++.. +..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|...
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 9999999643 2788999999999999999996655 36788999999999999753
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.68 E-value=6.5e-17 Score=136.37 Aligned_cols=128 Identities=21% Similarity=0.293 Sum_probs=93.0
Q ss_pred cCccEEEccCCcCC-CCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeee
Q 013710 214 SNLTHVDFSGNQLK-GKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLD 292 (437)
Q Consensus 214 ~~L~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 292 (437)
++|++|++++|.++ +.++..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 55666666666665 45666677777888888888877754 5677778888888888888765676666678888888
Q ss_pred ccCCcCCCc-chhhhcCCCCCCEEeccCCcCCCCCC---CCcccCCCCCEEEecC
Q 013710 293 LSSNQLNGT-IPRFFSDLKKLRYLNLQNNNFHGVLP---FNASILEKLQVFKVGG 343 (437)
Q Consensus 293 L~~N~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~~~---~~l~~l~~L~~L~l~~ 343 (437)
+++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 888888753 23667778888888888888876544 3567778888877653
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=9.1e-18 Score=177.31 Aligned_cols=174 Identities=18% Similarity=0.222 Sum_probs=88.3
Q ss_pred hhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCC
Q 013710 161 VFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLE 238 (437)
Q Consensus 161 ~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~ 238 (437)
..+..+.+|+.|+|++|.+.. ++..+.++++|++|+|++|.++ .+|..+. ++|++|+|++|.|+ .+|..|..++
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp ----CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 345566777777777777642 3444556677777777777776 5666555 67777777777776 5566677777
Q ss_pred CCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCC-CCCeeeccCCcCCCcchhhhcCCCCCCEEec
Q 013710 239 NLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLT-DMVHLDLSSNQLNGTIPRFFSDLKKLRYLNL 317 (437)
Q Consensus 239 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 317 (437)
+|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|..+..+. .+..++|++|.+++.+|. .|+.|++
T Consensus 294 ~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l 366 (727)
T 4b8c_D 294 QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEI 366 (727)
T ss_dssp TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C------
T ss_pred CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEe
Confidence 7777777777776 5566677777777777777777766665554321 112356677777665553 3445555
Q ss_pred cCC--------cCCCCCCCCcccCCCCCEEEecCCC
Q 013710 318 QNN--------NFHGVLPFNASILEKLQVFKVGGNT 345 (437)
Q Consensus 318 ~~N--------~l~~~~~~~l~~l~~L~~L~l~~N~ 345 (437)
++| .+.+..+..+..+..+....++.|-
T Consensus 367 ~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Ni 402 (727)
T 4b8c_D 367 NTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNT 402 (727)
T ss_dssp -----------------------------------C
T ss_pred ecccccccccCCccccccchhhcccccceeeeeccc
Confidence 555 2232333333344444555555554
No 126
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.66 E-value=2.8e-18 Score=177.53 Aligned_cols=180 Identities=18% Similarity=0.168 Sum_probs=99.9
Q ss_pred CCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc---cCccEEEc--------------------
Q 013710 165 RFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH---SNLTHVDF-------------------- 221 (437)
Q Consensus 165 ~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~---~~L~~L~L-------------------- 221 (437)
.+++|++|++++|.+...++...+.++++|++|++++| +.+.....+. ++|++|++
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 46778888888877655445555667777777777766 3221111111 45555555
Q ss_pred --------------cCCcCCCCCChhcc-CCCCCcEEEcc--C----CCCCCCCC-----cccCCCcccceeecccccCC
Q 013710 222 --------------SGNQLKGKIPTSIT-LLENLQHLNLS--S----NGLNGEIP-----SSIGDLIALKNVSLASNSLS 275 (437)
Q Consensus 222 --------------s~n~l~~~~~~~l~-~l~~L~~L~L~--~----n~l~~~~~-----~~l~~l~~L~~L~L~~n~l~ 275 (437)
+.|.+++.....+. .+++|++|+++ + +.+++... ..+..+++|+.|++++ .++
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~ 444 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT 444 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence 33333322222222 34556666665 2 33331110 1133455666666655 444
Q ss_pred CCCccccCC-CCCCCeeeccCCcCCCcchhhh-cCCCCCCEEeccCCcCCCCCCC-CcccCCCCCEEEecCCCC
Q 013710 276 GSVPESMAS-LTDMVHLDLSSNQLNGTIPRFF-SDLKKLRYLNLQNNNFHGVLPF-NASILEKLQVFKVGGNTN 346 (437)
Q Consensus 276 ~~~~~~l~~-l~~L~~L~L~~N~l~~~~~~~l-~~l~~L~~L~L~~N~l~~~~~~-~l~~l~~L~~L~l~~N~~ 346 (437)
+.....+.. +++|++|+|++|.+++.....+ ..+++|++|++++|.+++.... ....+++|+.|++++|+.
T Consensus 445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 333333333 6778888888887765444444 5677888888888877543322 334577888888888875
No 127
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=2.6e-17 Score=173.89 Aligned_cols=143 Identities=22% Similarity=0.330 Sum_probs=121.7
Q ss_pred hhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCC
Q 013710 184 LYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDL 261 (437)
Q Consensus 184 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l 261 (437)
.+..+..+.+|+.|+|++|.+. .++..++ ++|++|+|++|.|+ .+|..|.++++|++|+|++|.++ .+|..|+.+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 4567888999999999999998 6676665 89999999999999 88899999999999999999999 789999999
Q ss_pred cccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCC-CCEEeccCCcCCCCCCCCc
Q 013710 262 IALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKK-LRYLNLQNNNFHGVLPFNA 330 (437)
Q Consensus 262 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~-L~~L~L~~N~l~~~~~~~l 330 (437)
++|++|+|++|.|+ .+|..|..+++|++|+|++|.+++.+|..+..+.. +..++|++|.+++.+|..+
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l 361 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER 361 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc
Confidence 99999999999998 77888999999999999999999988888765432 2347899999998887644
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=3.8e-16 Score=131.65 Aligned_cols=127 Identities=19% Similarity=0.287 Sum_probs=101.5
Q ss_pred CcCccEEEeeCCccc-ccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCccccee
Q 013710 191 MHKLRSVTISNANVT-GYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNV 267 (437)
Q Consensus 191 l~~L~~L~L~~n~l~-~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 267 (437)
.++|++|++++|.++ +.++..+. ++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 356777777777776 55665544 7788888888888755 678888999999999999987677777778999999
Q ss_pred ecccccCCCC-CccccCCCCCCCeeeccCCcCCCcch---hhhcCCCCCCEEeccC
Q 013710 268 SLASNSLSGS-VPESMASLTDMVHLDLSSNQLNGTIP---RFFSDLKKLRYLNLQN 319 (437)
Q Consensus 268 ~L~~n~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~~~---~~l~~l~~L~~L~L~~ 319 (437)
++++|++++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999998853 34778889999999999999986655 5788899999998864
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=5.7e-18 Score=173.70 Aligned_cols=178 Identities=20% Similarity=0.224 Sum_probs=144.7
Q ss_pred cCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCc-------------ccccCCcccc--cCccEEE-ccCCcCC
Q 013710 164 SRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNAN-------------VTGYIPKHLH--SNLTHVD-FSGNQLK 227 (437)
Q Consensus 164 ~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~-------------l~~~~~~~~~--~~L~~L~-Ls~n~l~ 227 (437)
...++|+.|++++|.+. .++..++++++|+.|++++|. ..+..|..+. ++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~--~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~ 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST--VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH--HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred ccCccceeccCChhhHH--hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence 57889999999999984 588899999999999997764 3444444444 6777777 5555432
Q ss_pred CCCCh------hccC--CCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCC
Q 013710 228 GKIPT------SITL--LENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLN 299 (437)
Q Consensus 228 ~~~~~------~l~~--l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~ 299 (437)
. ++. .+.. ...|+.|+|++|.+++ +|. ++.+++|+.|+|++|+++ .+|..++.+++|++|+|++|+++
T Consensus 424 ~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 424 D-LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp H-HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred h-hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence 1 110 0111 1359999999999995 666 999999999999999999 78889999999999999999999
Q ss_pred CcchhhhcCCCCCCEEeccCCcCCCCC-CCCcccCCCCCEEEecCCCCCCc
Q 013710 300 GTIPRFFSDLKKLRYLNLQNNNFHGVL-PFNASILEKLQVFKVGGNTNLCY 349 (437)
Q Consensus 300 ~~~~~~l~~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~l~~N~~~c~ 349 (437)
+ +| .+..+++|++|+|++|++++.. |..+..+++|+.|++++|+....
T Consensus 500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp C-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 6 56 7999999999999999999876 89999999999999999986543
No 130
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.63 E-value=9.9e-18 Score=173.39 Aligned_cols=155 Identities=17% Similarity=0.095 Sum_probs=107.5
Q ss_pred CCcCccEEEeeCCcccccCCcccc---cCccEEEcc--C----CcCCCCC-----ChhccCCCCCcEEEccCCCCCCCCC
Q 013710 190 NMHKLRSVTISNANVTGYIPKHLH---SNLTHVDFS--G----NQLKGKI-----PTSITLLENLQHLNLSSNGLNGEIP 255 (437)
Q Consensus 190 ~l~~L~~L~L~~n~l~~~~~~~~~---~~L~~L~Ls--~----n~l~~~~-----~~~l~~l~~L~~L~L~~n~l~~~~~ 255 (437)
++++|++|++..|.+++.....+. ++|++|+++ + +.++... +..+..+++|++|++++ .+++...
T Consensus 370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~ 448 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVF 448 (594)
T ss_dssp HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHH
T ss_pred hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHH
Confidence 356666666666666544433332 799999999 4 5555221 12366789999999977 6665444
Q ss_pred cccCC-CcccceeecccccCCCCCcccc-CCCCCCCeeeccCCcCCCcchh-hhcCCCCCCEEeccCCcCCCCCCCCc-c
Q 013710 256 SSIGD-LIALKNVSLASNSLSGSVPESM-ASLTDMVHLDLSSNQLNGTIPR-FFSDLKKLRYLNLQNNNFHGVLPFNA-S 331 (437)
Q Consensus 256 ~~l~~-l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~N~l~~~~~~-~l~~l~~L~~L~L~~N~l~~~~~~~l-~ 331 (437)
..+.. +++|++|++++|.+++.....+ ..+++|++|+|++|.+++.... ....+++|++|++++|+++......+ .
T Consensus 449 ~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 528 (594)
T 2p1m_B 449 EYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQ 528 (594)
T ss_dssp HHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHH
T ss_pred HHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHH
Confidence 44544 7899999999999986544444 6689999999999999654443 44568999999999999864433333 4
Q ss_pred cCCCCCEEEecCCC
Q 013710 332 ILEKLQVFKVGGNT 345 (437)
Q Consensus 332 ~l~~L~~L~l~~N~ 345 (437)
.+++|+...+.++.
T Consensus 529 ~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 529 KMPKLNVEVIDERG 542 (594)
T ss_dssp HCTTEEEEEECSSS
T ss_pred hCCCCEEEEecCCC
Confidence 56777766666553
No 131
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.61 E-value=3.1e-15 Score=129.07 Aligned_cols=110 Identities=23% Similarity=0.277 Sum_probs=93.9
Q ss_pred CCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEecc
Q 013710 239 NLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQ 318 (437)
Q Consensus 239 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~ 318 (437)
..+.+++++|.++ .+|..+. ++|++|++++|++++..+..|.++++|++|+|++|+|++..+..|.++++|++|+|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 3567888888887 4565543 788889999999887778888899999999999999998777788899999999999
Q ss_pred CCcCCCCCCCCcccCCCCCEEEecCCCCCCcCc
Q 013710 319 NNNFHGVLPFNASILEKLQVFKVGGNTNLCYNH 351 (437)
Q Consensus 319 ~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~ 351 (437)
+|+|++..+..+..+++|+.|++++|++.|+|.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999997777778899999999999999999986
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=8.3e-16 Score=147.25 Aligned_cols=246 Identities=12% Similarity=0.108 Sum_probs=152.5
Q ss_pred hhhhhhccccccccCCCCCccccCCCCC-CCCeeEEEccCCCCCC-------------------cCChhhhCC-------
Q 013710 67 PKQIRALQSLNIPSKSACSLYKCDSSKP-FSHLLSLRLSNCSDDI-------------------SLSSTALKS------- 119 (437)
Q Consensus 67 ~~~~~~L~~l~~~~~~~c~~~~~~~~~~-l~~L~~L~Ls~n~~~~-------------------~~~~~~~~~------- 119 (437)
..++.+++.|++++.- .......+.. +++|++|||++|++.. .++..+|.+
T Consensus 21 ~~~~~~l~~L~l~g~i--~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 21 EEEANSITHLTLTGKL--NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTK 98 (329)
T ss_dssp HHHHHHCSEEEEEEEE--CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEE
T ss_pred chhhCceeEEEEeccc--cHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhccccccccc
Confidence 4467778888876521 1111111112 6789999999998761 223344445
Q ss_pred -CCCCCEEecccCCCCCCCCCchhhhccccccccccCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEE
Q 013710 120 -LSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCIHSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVT 198 (437)
Q Consensus 120 -l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~ 198 (437)
+++|++|+|.+ .++ .+....|.++.+|+.|++.+|.+... ....|.++.++.++.
T Consensus 99 g~~~L~~l~L~~-~i~----------------------~I~~~aF~~~~~L~~l~l~~n~i~~i-~~~aF~~~~~l~~l~ 154 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIK----------------------NIEDAAFKGCDNLKICQIRKKTAPNL-LPEALADSVTAIFIP 154 (329)
T ss_dssp ECTTCCC-CBCT-TCC----------------------EECTTTTTTCTTCCEEEBCCSSCCEE-CTTSSCTTTCEEEEC
T ss_pred ccCCCcEEECCc-ccc----------------------chhHHHhhcCcccceEEcCCCCcccc-chhhhcCCCceEEec
Confidence 55555555554 333 33444667777777777777766433 233455555555555
Q ss_pred eeCCcc----cccCCcccc----------------------------cCccEEEccCCcCCCCCChhc-cCCCCCcEEEc
Q 013710 199 ISNANV----TGYIPKHLH----------------------------SNLTHVDFSGNQLKGKIPTSI-TLLENLQHLNL 245 (437)
Q Consensus 199 L~~n~l----~~~~~~~~~----------------------------~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~L 245 (437)
+..+.. .......+. .+++.+.+.++-.. .....+ ..+++|+.|+|
T Consensus 155 ~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L 233 (329)
T 3sb4_A 155 LGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDI 233 (329)
T ss_dssp TTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEEC
T ss_pred CcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEEC
Confidence 443211 000000010 22233333322111 000011 13788999999
Q ss_pred cCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCC-eeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCC
Q 013710 246 SSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMV-HLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHG 324 (437)
Q Consensus 246 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 324 (437)
++|+++......|.++.+|+.+++.+| ++......|.++.+|+ .+++.+ .++.+.+..|.++++|+.+++++|+++.
T Consensus 234 ~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 234 SKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp TTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred CCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence 998888666677888999999999887 7656677788899998 999988 7776667889999999999998998887
Q ss_pred CCCCCcccCCCCCEEEe
Q 013710 325 VLPFNASILEKLQVFKV 341 (437)
Q Consensus 325 ~~~~~l~~l~~L~~L~l 341 (437)
.....|..+++|+.++.
T Consensus 312 I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 312 LGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECTTTTCTTCCCCEEEC
T ss_pred cchhhhcCCcchhhhcc
Confidence 77788888888888763
No 133
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.58 E-value=9e-15 Score=126.65 Aligned_cols=109 Identities=20% Similarity=0.260 Sum_probs=90.8
Q ss_pred CcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccC
Q 013710 240 LQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQN 319 (437)
Q Consensus 240 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~ 319 (437)
-+.+++++|.++ .+|..+. ++|++|++++|++++..+..|.++++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 367788888876 5665553 7788888888888877777888889999999999999877667788899999999999
Q ss_pred CcCCCCCCCCcccCCCCCEEEecCCCCCCcCc
Q 013710 320 NNFHGVLPFNASILEKLQVFKVGGNTNLCYNH 351 (437)
Q Consensus 320 N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~ 351 (437)
|+|++..+..+..+++|+.|++++|++.|+|.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 99997666668889999999999999999986
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=4e-15 Score=129.09 Aligned_cols=128 Identities=20% Similarity=0.270 Sum_probs=57.2
Q ss_pred CCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCccccee
Q 013710 190 NMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNV 267 (437)
Q Consensus 190 ~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 267 (437)
++.+|++|++++|+++. ++.... ++|++|++++|.+++. ..|..+++|++|++++|.+++..+..+..+++|++|
T Consensus 17 ~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp CTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 34455555555555542 222111 2455555555554432 344455555555555555543322223444555555
Q ss_pred ecccccCCCCCcc--ccCCCCCCCeeeccCCcCCCcchh----hhcCCCCCCEEeccCCcC
Q 013710 268 SLASNSLSGSVPE--SMASLTDMVHLDLSSNQLNGTIPR----FFSDLKKLRYLNLQNNNF 322 (437)
Q Consensus 268 ~L~~n~l~~~~~~--~l~~l~~L~~L~L~~N~l~~~~~~----~l~~l~~L~~L~L~~N~l 322 (437)
++++|+++ .++. .+..+++|++|++++|.+. ..+. .+..+++|++|++++|.+
T Consensus 94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 55555543 2222 3444444555555554444 2222 244444444444444433
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=4.4e-15 Score=128.86 Aligned_cols=127 Identities=17% Similarity=0.185 Sum_probs=108.2
Q ss_pred cCccEEEccCCcCCCCCChhccCCC-CCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeee
Q 013710 214 SNLTHVDFSGNQLKGKIPTSITLLE-NLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLD 292 (437)
Q Consensus 214 ~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 292 (437)
.+|++|++++|+++. ++. +..+. +|++|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 19 ~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 789999999999994 454 44444 999999999999854 6789999999999999999965555568899999999
Q ss_pred ccCCcCCCcchh--hhcCCCCCCEEeccCCcCCCCCCCC----cccCCCCCEEEecCCCC
Q 013710 293 LSSNQLNGTIPR--FFSDLKKLRYLNLQNNNFHGVLPFN----ASILEKLQVFKVGGNTN 346 (437)
Q Consensus 293 L~~N~l~~~~~~--~l~~l~~L~~L~L~~N~l~~~~~~~----l~~l~~L~~L~l~~N~~ 346 (437)
|++|+++. ++. .+..+++|++|++++|.++ ..|.. +..+++|+.||+++|..
T Consensus 95 L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 95 LTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 99999974 554 7889999999999999998 45553 78899999999999863
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.53 E-value=1e-14 Score=139.63 Aligned_cols=241 Identities=12% Similarity=0.033 Sum_probs=164.5
Q ss_pred hhhccccccccCCCC--C-----------------ccccCCCCC--------CCCeeEEEccCCCCCCcCChhhhCCCCC
Q 013710 70 IRALQSLNIPSKSAC--S-----------------LYKCDSSKP--------FSHLLSLRLSNCSDDISLSSTALKSLST 122 (437)
Q Consensus 70 ~~~L~~l~~~~~~~c--~-----------------~~~~~~~~~--------l~~L~~L~Ls~n~~~~~~~~~~~~~l~~ 122 (437)
+.+|+.||++++..- . .+.-..|.+ +++|++|+|.+ .+. .++..+|.++++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-ccc-chhHHHhhcCcc
Confidence 445888888775433 0 133356677 89999999998 664 566689999999
Q ss_pred CCEEecccCCCCCCCCCchhhhccccccccc--------cCCCCChhhhcCCCCCC-EEEeecCCCCCCchhHhhcCCcC
Q 013710 123 LQNLTFFNCPIAPIHFPNDLSLSLLSFSCIH--------SLHHLSGVFLSRFVNLT-DLTVTNVPVNASGLYVIIGNMHK 193 (437)
Q Consensus 123 L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l~--------~l~~l~~~~~~~l~~L~-~L~ls~n~l~~~~~~~~l~~l~~ 193 (437)
|++|++.+|.+..+ +.........+..+. ....+....|..+..|+ .+++.....-.......-....+
T Consensus 126 L~~l~l~~n~i~~i--~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~ 203 (329)
T 3sb4_A 126 LKICQIRKKTAPNL--LPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRD 203 (329)
T ss_dssp CCEEEBCCSSCCEE--CTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGG
T ss_pred cceEEcCCCCcccc--chhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccc
Confidence 99999999987644 332221111111111 11123333455555665 44444322100001111123456
Q ss_pred ccEEEeeCCcccccCCccc---ccCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccc-eeec
Q 013710 194 LRSVTISNANVTGYIPKHL---HSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALK-NVSL 269 (437)
Q Consensus 194 L~~L~L~~n~l~~~~~~~~---~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~L 269 (437)
++.+.+.++-.. .....+ .++|+.+++++|+++.+...+|.++.+|++|++.+| ++.....+|.++.+|+ .+++
T Consensus 204 ~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l 281 (329)
T 3sb4_A 204 INFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLEL 281 (329)
T ss_dssp CSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEE
T ss_pred cceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEE
Confidence 777777765221 111111 279999999999999777789999999999999998 7766778899999999 9999
Q ss_pred ccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEec
Q 013710 270 ASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNL 317 (437)
Q Consensus 270 ~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 317 (437)
.+ .++...+..|.++++|+.+++++|+++......|.++++|+.++.
T Consensus 282 ~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 282 PA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 98 777667788999999999999999999787889999999999864
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.53 E-value=8.3e-17 Score=142.63 Aligned_cols=122 Identities=22% Similarity=0.263 Sum_probs=61.3
Q ss_pred cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeec
Q 013710 214 SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDL 293 (437)
Q Consensus 214 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 293 (437)
++|++|++++|.+++ ++ .+..+++|++|++++|.++ .+|..+..+++|++|++++|++++ ++ .+..+++|++|++
T Consensus 48 ~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l 122 (198)
T 1ds9_A 48 KACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYM 122 (198)
T ss_dssp TTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEE
T ss_pred CCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEEC
Confidence 444444444444443 33 4445555555555555554 344444444555555555555553 22 3444555555555
Q ss_pred cCCcCCCcch-hhhcCCCCCCEEeccCCcCCCCCCCC----------cccCCCCCEEE
Q 013710 294 SSNQLNGTIP-RFFSDLKKLRYLNLQNNNFHGVLPFN----------ASILEKLQVFK 340 (437)
Q Consensus 294 ~~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~----------l~~l~~L~~L~ 340 (437)
++|++++... ..+..+++|++|++++|.+++..|.. +..+++|+.||
T Consensus 123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 5555553222 34555555666666655555443332 44555565554
No 138
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.52 E-value=3.2e-14 Score=137.13 Aligned_cols=116 Identities=18% Similarity=0.187 Sum_probs=93.6
Q ss_pred cEEEccCC-CCCCCCCcccCCCcccceeeccc-ccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEecc
Q 013710 241 QHLNLSSN-GLNGEIPSSIGDLIALKNVSLAS-NSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQ 318 (437)
Q Consensus 241 ~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~ 318 (437)
..++++++ +++ .+|. +..+.+|++|+|++ |++++..+..|.++++|++|+|++|+|++..+..|.++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35677777 777 5677 88888888999986 88887777788889999999999999988888888999999999999
Q ss_pred CCcCCCCCCCCcccCCCCCEEEecCCCCCCcCc-cccccccc
Q 013710 319 NNNFHGVLPFNASILEKLQVFKVGGNTNLCYNH-TVLSSKLK 359 (437)
Q Consensus 319 ~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~-~~~~~~~~ 359 (437)
+|+|++..+..+..+. |+.|++.+|++.|+|. .++..|..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~ 129 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEE 129 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHH
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHH
Confidence 9999866555555554 9999999999999998 55555544
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.51 E-value=8e-14 Score=120.18 Aligned_cols=104 Identities=32% Similarity=0.398 Sum_probs=58.4
Q ss_pred cEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCC
Q 013710 217 THVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSN 296 (437)
Q Consensus 217 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N 296 (437)
+++++++|.++ .+|..+ .++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 44555555554 233332 245555555555555544555555556666666666665444444556666666666666
Q ss_pred cCCCcchhhhcCCCCCCEEeccCCcCC
Q 013710 297 QLNGTIPRFFSDLKKLRYLNLQNNNFH 323 (437)
Q Consensus 297 ~l~~~~~~~l~~l~~L~~L~L~~N~l~ 323 (437)
++++..+..|..+++|++|+|++|.++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 666555555666666666666666665
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.50 E-value=4.7e-13 Score=131.34 Aligned_cols=171 Identities=11% Similarity=0.113 Sum_probs=87.0
Q ss_pred CCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc-cCccEEEccCCcCCCCCChhccCCCCCcEEEc
Q 013710 167 VNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH-SNLTHVDFSGNQLKGKIPTSITLLENLQHLNL 245 (437)
Q Consensus 167 ~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 245 (437)
.+|+.+.+.++ +... -...|.++.+|+.+++..+ ++......|. .+|+.+.+. +.++.....+|.++.+|+.+++
T Consensus 203 ~~L~~l~lp~~-l~~I-~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l 278 (401)
T 4fdw_A 203 AGIEEVLLPVT-LKEI-GSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTT 278 (401)
T ss_dssp CCCSEEECCTT-CCEE-CTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEE
T ss_pred cccCEEEeCCc-hhee-hhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEe
Confidence 45555555533 2211 2234555556666666543 3322222222 556666663 3344344455666666666666
Q ss_pred cCCCCC-----CCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCC
Q 013710 246 SSNGLN-----GEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNN 320 (437)
Q Consensus 246 ~~n~l~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N 320 (437)
.+|.+. ......|.++.+|+.+++.+ .++......|.++.+|+.++|.+| ++......|.++ +|+.+++.+|
T Consensus 279 ~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 279 YGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp ESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred CCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence 655443 23334555666666666653 344344455566666666666433 443444555555 6666666666
Q ss_pred cCCCCCCCCcccCC-CCCEEEecCC
Q 013710 321 NFHGVLPFNASILE-KLQVFKVGGN 344 (437)
Q Consensus 321 ~l~~~~~~~l~~l~-~L~~L~l~~N 344 (437)
.+.......+..++ +++.+++..+
T Consensus 356 ~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 356 TPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp SCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred CCcccccccccCCCCCccEEEeCHH
Confidence 55544444444442 4555555544
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.49 E-value=4.1e-16 Score=138.14 Aligned_cols=153 Identities=18% Similarity=0.282 Sum_probs=121.7
Q ss_pred CCCCCCEEEeecCCCCCC-----chhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCC
Q 013710 165 RFVNLTDLTVTNVPVNAS-----GLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLL 237 (437)
Q Consensus 165 ~l~~L~~L~ls~n~l~~~-----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l 237 (437)
....++.++++++.+... .++..+..+++|++|++++|.+++ ++ .+. ++|++|++++|.++ .++..+..+
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence 344555555555555432 244578899999999999999986 56 554 89999999999998 677778888
Q ss_pred CCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCc-cccCCCCCCCeeeccCCcCCCcchh----------hh
Q 013710 238 ENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVP-ESMASLTDMVHLDLSSNQLNGTIPR----------FF 306 (437)
Q Consensus 238 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~----------~l 306 (437)
++|++|++++|.+++ ++ .+..+++|++|++++|++++... ..+..+++|++|++++|.+.+..|. .+
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 999999999999985 44 68889999999999999985332 4788999999999999999765543 37
Q ss_pred cCCCCCCEEeccCCcCCC
Q 013710 307 SDLKKLRYLNLQNNNFHG 324 (437)
Q Consensus 307 ~~l~~L~~L~L~~N~l~~ 324 (437)
..+++|++|| +|.++.
T Consensus 171 ~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 171 KRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHCSSCSEEC--CGGGTT
T ss_pred HhCCCcEEEC--CcccCH
Confidence 8899999997 777664
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.48 E-value=1.9e-13 Score=118.29 Aligned_cols=86 Identities=28% Similarity=0.395 Sum_probs=45.3
Q ss_pred CCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEec
Q 013710 238 ENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNL 317 (437)
Q Consensus 238 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 317 (437)
++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|.++++|++|+|++|+|++..+..|..+++|++|+|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 44555555555555444444555555555555555555433333455555555555555555444444555555666666
Q ss_pred cCCcCC
Q 013710 318 QNNNFH 323 (437)
Q Consensus 318 ~~N~l~ 323 (437)
++|.+.
T Consensus 113 ~~N~~~ 118 (174)
T 2r9u_A 113 YNNPWD 118 (174)
T ss_dssp CSSCBC
T ss_pred CCCCcc
Confidence 666555
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.42 E-value=4.3e-12 Score=124.48 Aligned_cols=235 Identities=12% Similarity=0.127 Sum_probs=145.3
Q ss_pred CCeeEEEccCCCCCCcCChhhhCCCCCCCEEecccCCCCCCCCCchhhhcccccccc---ccCCCCChhhhcCCCCCCEE
Q 013710 96 SHLLSLRLSNCSDDISLSSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCI---HSLHHLSGVFLSRFVNLTDL 172 (437)
Q Consensus 96 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l---~~l~~l~~~~~~~l~~L~~L 172 (437)
..++++.+.+ .+ ..++..+|.+. +|+.+++..+ ++.+ +...... ..+..+ ..+..+....|.++.+|+.+
T Consensus 113 ~~l~~i~ip~-~i-~~I~~~aF~~~-~L~~i~l~~~-i~~I--~~~aF~~-~~L~~i~lp~~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 113 KGYNEIILPN-SV-KSIPKDAFRNS-QIAKVVLNEG-LKSI--GDMAFFN-STVQEIVFPSTLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp SSCSEEECCT-TC-CEECTTTTTTC-CCSEEECCTT-CCEE--CTTTTTT-CCCCEEECCTTCCEECSSTTTTCTTCCEE
T ss_pred CCccEEEECC-cc-CEehHhhcccC-CccEEEeCCC-ccEE--CHHhcCC-CCceEEEeCCCccEehHHHhhCcccCCee
Confidence 4566666663 33 24444566664 5777776554 3322 1111100 011111 13334555667788888888
Q ss_pred EeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCC
Q 013710 173 TVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGL 250 (437)
Q Consensus 173 ~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l 250 (437)
++.+|.+.... ...|. ..+|+.+.+.++ ++......|. .+|+.+++..+ ++.....+|.+ .+|+.+.+. +.+
T Consensus 186 ~l~~n~l~~I~-~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 186 DLSKTKITKLP-ASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp ECTTSCCSEEC-TTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred ecCCCcceEec-hhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence 88877775432 22344 467888888744 5534344443 67888888764 45455566766 678888884 445
Q ss_pred CCCCCcccCCCcccceeecccccCC-----CCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCC
Q 013710 251 NGEIPSSIGDLIALKNVSLASNSLS-----GSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGV 325 (437)
Q Consensus 251 ~~~~~~~l~~l~~L~~L~L~~n~l~-----~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~ 325 (437)
+.....+|.++.+|+.+++.+|.+. ......|.++++|+.++|. +.++......|.++.+|+.+++..| ++..
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I 337 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQI 337 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence 5455667788888888888777654 2445667788888888887 4466566677888888888888554 6656
Q ss_pred CCCCcccCCCCCEEEecCCCC
Q 013710 326 LPFNASILEKLQVFKVGGNTN 346 (437)
Q Consensus 326 ~~~~l~~l~~L~~L~l~~N~~ 346 (437)
....|..+ +|+.+++.+|..
T Consensus 338 ~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 338 NFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp CTTSSSSS-CCCEEEECCSSC
T ss_pred cHHhCCCC-CCCEEEEcCCCC
Confidence 66677777 888888887753
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.41 E-value=3.6e-15 Score=145.01 Aligned_cols=85 Identities=18% Similarity=0.303 Sum_probs=39.2
Q ss_pred CCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc-------cCccEEEccCCcCCCC----CChhcc
Q 013710 167 VNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH-------SNLTHVDFSGNQLKGK----IPTSIT 235 (437)
Q Consensus 167 ~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-------~~L~~L~Ls~n~l~~~----~~~~l~ 235 (437)
.+|++|++++|.++..+.......+.+|++|+|++|.+++.....+. .+|++|+|++|.++.. +...+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 45666666666655443333333344555666666655433222221 3455555555544321 122223
Q ss_pred CCCCCcEEEccCCCCC
Q 013710 236 LLENLQHLNLSSNGLN 251 (437)
Q Consensus 236 ~l~~L~~L~L~~n~l~ 251 (437)
.+++|++|+|++|.++
T Consensus 181 ~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLG 196 (372)
T ss_dssp TCSSCCEEECTTSSCH
T ss_pred cCCCcCEEeCCCCCCC
Confidence 4444555555555443
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.39 E-value=3.5e-14 Score=138.08 Aligned_cols=166 Identities=16% Similarity=0.195 Sum_probs=124.6
Q ss_pred CCCCCCEEEeecCCCCCCc---hhHhhcC-CcCccEEEeeCCcccccCCcccc---cCccEEEccCCcCCCCCChhc---
Q 013710 165 RFVNLTDLTVTNVPVNASG---LYVIIGN-MHKLRSVTISNANVTGYIPKHLH---SNLTHVDFSGNQLKGKIPTSI--- 234 (437)
Q Consensus 165 ~l~~L~~L~ls~n~l~~~~---~~~~l~~-l~~L~~L~L~~n~l~~~~~~~~~---~~L~~L~Ls~n~l~~~~~~~l--- 234 (437)
.+.+|+.|++++|.++... +...+.. ..+|++|+|++|.+++.....+. .+|++|+|++|.++......+
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 4568999999999997543 2233332 36999999999999765444443 789999999999975433343
Q ss_pred --cCCCCCcEEEccCCCCCCC----CCcccCCCcccceeecccccCCCC----CccccCCCCCCCeeeccCCcCCCc---
Q 013710 235 --TLLENLQHLNLSSNGLNGE----IPSSIGDLIALKNVSLASNSLSGS----VPESMASLTDMVHLDLSSNQLNGT--- 301 (437)
Q Consensus 235 --~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~--- 301 (437)
...++|++|+|++|.+++. +...+...++|++|+|++|.+++. +...+...++|++|+|++|.|++.
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 3568899999999998742 334456788999999999999853 355667778999999999999853
Q ss_pred -chhhhcCCCCCCEEeccCCcCCCCCCCCc
Q 013710 302 -IPRFFSDLKKLRYLNLQNNNFHGVLPFNA 330 (437)
Q Consensus 302 -~~~~l~~l~~L~~L~L~~N~l~~~~~~~l 330 (437)
+...+...++|++|+|++|.|++.....+
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 33455567899999999999986443333
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.33 E-value=1.2e-12 Score=126.09 Aligned_cols=100 Identities=21% Similarity=0.254 Sum_probs=53.8
Q ss_pred EEeeCC-cccccCCcccc--cCccEEEccC-CcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccc
Q 013710 197 VTISNA-NVTGYIPKHLH--SNLTHVDFSG-NQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASN 272 (437)
Q Consensus 197 L~L~~n-~l~~~~~~~~~--~~L~~L~Ls~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 272 (437)
++++++ +++ .+|. +. .+|++|+|++ |.+++..+..|.++++|++|+|++|++++..+..|.++++|++|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455555 555 3444 43 4455666653 5555544455555555666666655555555555555555555555555
Q ss_pred cCCCCCccccCCCCCCCeeeccCCcCC
Q 013710 273 SLSGSVPESMASLTDMVHLDLSSNQLN 299 (437)
Q Consensus 273 ~l~~~~~~~l~~l~~L~~L~L~~N~l~ 299 (437)
+|++..+..+..++ |++|+|.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 55543333343333 555555555554
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.96 E-value=2.3e-08 Score=97.76 Aligned_cols=111 Identities=9% Similarity=0.152 Sum_probs=80.4
Q ss_pred ChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCC
Q 013710 231 PTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLK 310 (437)
Q Consensus 231 ~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~ 310 (437)
..+|.++.+|+.+.+..+... ....+|.++.+|+.+.+. +.++......|.++.+|+.++|..+ ++......|.++.
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 346677778888887665443 444667778888888885 3455455567888888998888754 5545567788888
Q ss_pred CCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCC
Q 013710 311 KLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNT 345 (437)
Q Consensus 311 ~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~ 345 (437)
+|+.+.+..+ ++......|.++.+|+.+++.++.
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 8999888654 665666778888899998888774
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.93 E-value=3.8e-10 Score=108.79 Aligned_cols=84 Identities=17% Similarity=0.227 Sum_probs=48.0
Q ss_pred CCcccceeecccccCCCCCcccc---CCCCCCCeeeccCCcCCCcc----hhhhcCCCCCCEEeccCCcCCCCCCCCccc
Q 013710 260 DLIALKNVSLASNSLSGSVPESM---ASLTDMVHLDLSSNQLNGTI----PRFFSDLKKLRYLNLQNNNFHGVLPFNASI 332 (437)
Q Consensus 260 ~l~~L~~L~L~~n~l~~~~~~~l---~~l~~L~~L~L~~N~l~~~~----~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 332 (437)
.+++|++|++.+|.+.+.....+ ..+++|++|+|+.|.+.+.. ...+..+++|+.|++++|.+++..-..+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 35667777777666653322221 24567777777777776532 222344577788888777776433222222
Q ss_pred -CCCCCEEEecCCC
Q 013710 333 -LEKLQVFKVGGNT 345 (437)
Q Consensus 333 -l~~L~~L~l~~N~ 345 (437)
+ ...+++++|+
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 2456777766
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.92 E-value=1.4e-08 Score=99.28 Aligned_cols=218 Identities=14% Similarity=0.108 Sum_probs=137.6
Q ss_pred ChhhhCCCCCCCEEecccCCCCCCCCCchhhhcccccccc---ccCCCCChhhhcCCCCCCEEEeecCCCCCCchhHhhc
Q 013710 113 SSTALKSLSTLQNLTFFNCPIAPIHFPNDLSLSLLSFSCI---HSLHHLSGVFLSRFVNLTDLTVTNVPVNASGLYVIIG 189 (437)
Q Consensus 113 ~~~~~~~l~~L~~L~L~~n~l~~i~lp~~l~~~l~~l~~l---~~l~~l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~ 189 (437)
...+|.++++|+.+++.++. .. ++........+++.+ ..+..+....+.++..|+.+.+.++... +.....
T Consensus 154 ~~~aF~~c~~L~~i~l~~~~-~~--I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~~~---i~~~~~ 227 (394)
T 4fs7_A 154 GDEAFATCESLEYVSLPDSM-ET--LHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSLYY---LGDFAL 227 (394)
T ss_dssp CTTTTTTCTTCCEEECCTTC-CE--ECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTCCE---ECTTTT
T ss_pred chhhhcccCCCcEEecCCcc-ce--eccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCCceE---eehhhc
Confidence 34577888888888876542 11 122221111112211 1233444556777777777776655432 122233
Q ss_pred CCcCccEEEeeCCcccccCCcccc--cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCccccee
Q 013710 190 NMHKLRSVTISNANVTGYIPKHLH--SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNV 267 (437)
Q Consensus 190 ~l~~L~~L~L~~n~l~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 267 (437)
...+|+.+.+.... +......+. ..++.+.+..+... .....|..+..++.+....+.+. ...|..+.+|+.+
T Consensus 228 ~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i 302 (394)
T 4fs7_A 228 SKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEV 302 (394)
T ss_dssp TTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEE
T ss_pred ccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---ccccccccccccc
Confidence 44677777775432 212222222 67778877766543 55567778888888877666543 2457778888888
Q ss_pred ecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCC
Q 013710 268 SLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGN 344 (437)
Q Consensus 268 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N 344 (437)
.+..+ ++......|.++.+|+.++|.++ ++......|.++.+|+.+++..| ++......|..+.+|+.+++..+
T Consensus 303 ~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 303 KLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp EECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred ccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 88765 55455667888899999998754 66566678888999999999876 66566778888899999988755
No 150
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.91 E-value=1.5e-08 Score=99.13 Aligned_cols=177 Identities=10% Similarity=0.040 Sum_probs=104.8
Q ss_pred CChhhhcCCCCCCEEEeecCCCCCCchhHhhcCCcCccEEEeeCCcccccCCcccc------------------------
Q 013710 158 LSGVFLSRFVNLTDLTVTNVPVNASGLYVIIGNMHKLRSVTISNANVTGYIPKHLH------------------------ 213 (437)
Q Consensus 158 l~~~~~~~l~~L~~L~ls~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~------------------------ 213 (437)
+....|.++.+|+.+++.++... . ....|.++.+|+.+++..+ ++......+.
T Consensus 153 i~~~aF~~c~~L~~i~l~~~~~~-I-~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~ 229 (394)
T 4fs7_A 153 IGDEAFATCESLEYVSLPDSMET-L-HNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSK 229 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTTCCE-E-CTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTT
T ss_pred cchhhhcccCCCcEEecCCccce-e-ccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhccc
Confidence 34446777777777777654321 1 2234666677777766554 2211111111
Q ss_pred cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeec
Q 013710 214 SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDL 293 (437)
Q Consensus 214 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 293 (437)
.+|+.+.+..+ ++......|.++..|+.+.+..+... .....|..+..++.+....+.+. ...|..+.+|+.+.+
T Consensus 230 ~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l 304 (394)
T 4fs7_A 230 TGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKL 304 (394)
T ss_dssp CCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEE
T ss_pred CCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---ccccccccccccccc
Confidence 33444444322 12233345556666666666655433 34455666666666666554332 245667788888888
Q ss_pred cCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCC
Q 013710 294 SSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGN 344 (437)
Q Consensus 294 ~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N 344 (437)
.++ ++......|.++.+|+.+++.++ ++......|..+.+|+.+++..|
T Consensus 305 ~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 305 LDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred ccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 655 55455677888888999988754 66566677888888988888665
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.89 E-value=7.2e-10 Score=106.87 Aligned_cols=63 Identities=11% Similarity=0.173 Sum_probs=49.3
Q ss_pred CCCCCCeeeccCCcCCCcchhhhc---CCCCCCEEeccCCcCCCC----CCCCcccCCCCCEEEecCCCC
Q 013710 284 SLTDMVHLDLSSNQLNGTIPRFFS---DLKKLRYLNLQNNNFHGV----LPFNASILEKLQVFKVGGNTN 346 (437)
Q Consensus 284 ~l~~L~~L~L~~N~l~~~~~~~l~---~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~l~~N~~ 346 (437)
.+++|++|+|.+|.+.+.....+. .+++|++|+|++|.+++. ++..+..+++|+.|++++|..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 478999999999998754443333 578999999999999863 344456789999999999863
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.74 E-value=1.7e-09 Score=94.27 Aligned_cols=120 Identities=13% Similarity=0.207 Sum_probs=62.7
Q ss_pred hhcCCCCCCEEEeecC-CCCCCc---hhHhhcCCcCccEEEeeCCcccccCCcccccCccEEEccCCcCCCCCChhccCC
Q 013710 162 FLSRFVNLTDLTVTNV-PVNASG---LYVIIGNMHKLRSVTISNANVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLL 237 (437)
Q Consensus 162 ~~~~l~~L~~L~ls~n-~l~~~~---~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l 237 (437)
.+...++|++|++++| .+...+ +...+...++|++|+|++|.+.+.....+. ..+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~------------------~~L~~n 92 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA------------------EMLKVN 92 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHH------------------HHHHHC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHH------------------HHHHhC
Confidence 4566777888888877 776544 344555666777777777776643322222 122223
Q ss_pred CCCcEEEccCCCCCCC----CCcccCCCcccceeec--ccccCCCC----CccccCCCCCCCeeeccCCcCC
Q 013710 238 ENLQHLNLSSNGLNGE----IPSSIGDLIALKNVSL--ASNSLSGS----VPESMASLTDMVHLDLSSNQLN 299 (437)
Q Consensus 238 ~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L--~~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~ 299 (437)
++|++|+|++|.+.+. +.+.+...++|++|+| ++|.+.+. +...+...+.|++|+|++|.+.
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3444444444444321 1223334445555555 44555432 2233344456666666666654
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.70 E-value=3.2e-07 Score=88.98 Aligned_cols=127 Identities=12% Similarity=0.163 Sum_probs=81.2
Q ss_pred cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeec
Q 013710 214 SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDL 293 (437)
Q Consensus 214 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 293 (437)
.+|+.+.+..+ +.......|.++..|+.+.+..+ ++......|.++.+|+.+.+..+ +.......|.++.+|+.+.+
T Consensus 217 ~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l 293 (379)
T 4h09_A 217 KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVM 293 (379)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEE
T ss_pred cccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccc
Confidence 45666666544 33344456667777777777655 44344456667777777777543 44344456777777888887
Q ss_pred cCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCC
Q 013710 294 SSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGN 344 (437)
Q Consensus 294 ~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N 344 (437)
.++.++......|.++.+|+.+.|..+ ++......|.++.+|+.+.+..+
T Consensus 294 ~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 294 DNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 777776555667777777888777644 55455566777777777766543
No 154
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.70 E-value=6.3e-09 Score=84.87 Aligned_cols=103 Identities=19% Similarity=0.155 Sum_probs=73.5
Q ss_pred eeeccCCcCC-CcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCCCCCCcCc-ccccccccccccCCCC
Q 013710 290 HLDLSSNQLN-GTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGNTNLCYNH-TVLSSKLKLGIAPCDK 367 (437)
Q Consensus 290 ~L~L~~N~l~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N~~~c~~~-~~~~~~~~~~~~~c~~ 367 (437)
+++.+++.++ ..+|..+ -.+|++|+|++|+|+...+..|..+++|+.|+|++|||.|+|. .|+..|.......-..
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~~~~ 89 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERAPY 89 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCSGGG
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCcccccc
Confidence 6777777776 2344322 2368999999999997667778889999999999999999998 4555555433222223
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013710 368 HGLPISPPPAKDNSSDDSENDSSDDDD 394 (437)
Q Consensus 368 ~~~~~~~p~~~~~~~~~~~~~~~~~~~ 394 (437)
....|..|+...+....+...++..|.
T Consensus 90 ~~~~C~~P~~l~g~~l~~l~~~~l~c~ 116 (130)
T 3rfe_A 90 RDLRCVAPPALRGRLLPYLAEDELRAA 116 (130)
T ss_dssp TTCBCCBSTTTTTCBGGGCCHHHHHHT
T ss_pred cCcEeCcChHHcCCCcccCCHHHhhCc
Confidence 467888899888887777665555443
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.67 E-value=2.5e-07 Score=90.38 Aligned_cols=124 Identities=15% Similarity=0.169 Sum_probs=89.7
Q ss_pred cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeec
Q 013710 214 SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDL 293 (437)
Q Consensus 214 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 293 (437)
..|+.+.+..+... ....+|.++.+|+.+.+. +.++.....+|.++.+|+.+++..+ ++......|.++.+|+.+.+
T Consensus 265 ~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 265 AYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp SSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred ccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence 56777777665443 556788999999999996 4455455578999999999999865 55456678999999999999
Q ss_pred cCCcCCCcchhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCC
Q 013710 294 SSNQLNGTIPRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGN 344 (437)
Q Consensus 294 ~~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N 344 (437)
..+ ++......|.++.+|+.+++.++.... ..+..+..|+.+.+..|
T Consensus 342 p~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 342 PSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred Ccc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence 755 665667899999999999999986542 34566778888877655
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.64 E-value=2.8e-09 Score=92.82 Aligned_cols=122 Identities=20% Similarity=0.233 Sum_probs=87.2
Q ss_pred hhHhhcCCcCccEEEeeCC-cccccCCcccccCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCCCC----CCccc
Q 013710 184 LYVIIGNMHKLRSVTISNA-NVTGYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLNGE----IPSSI 258 (437)
Q Consensus 184 ~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l 258 (437)
+...+...++|++|+|++| .+...... .+...+...++|++|+|++|.+.+. +.+.+
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~------------------~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L 89 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLK------------------ACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML 89 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHH------------------HHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHH------------------HHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH
Confidence 3445566667777777776 66532222 1233455667888888888888642 22345
Q ss_pred CCCcccceeecccccCCCC----CccccCCCCCCCeeec--cCCcCCCc----chhhhcCCCCCCEEeccCCcCC
Q 013710 259 GDLIALKNVSLASNSLSGS----VPESMASLTDMVHLDL--SSNQLNGT----IPRFFSDLKKLRYLNLQNNNFH 323 (437)
Q Consensus 259 ~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L--~~N~l~~~----~~~~l~~l~~L~~L~L~~N~l~ 323 (437)
...++|++|+|++|.|.+. +...+...+.|++|+| ++|.|.+. +...+...++|++|+|++|.+.
T Consensus 90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 5568899999999999854 4566777889999999 88999854 3455666789999999999876
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.26 E-value=4.3e-07 Score=77.46 Aligned_cols=87 Identities=8% Similarity=0.069 Sum_probs=46.2
Q ss_pred ccceeecccccCCCCCccccCCCCCCCeeeccCCc-CCCcchhhhcCC----CCCCEEeccCCc-CCCCCCCCcccCCCC
Q 013710 263 ALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQ-LNGTIPRFFSDL----KKLRYLNLQNNN-FHGVLPFNASILEKL 336 (437)
Q Consensus 263 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~l~~l----~~L~~L~L~~N~-l~~~~~~~l~~l~~L 336 (437)
+|+.||++++.+++..-..+.++++|++|+|++|. +++..-..+..+ ++|++|+|++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555554444445555666666666653 444333344443 246666666653 554333334556666
Q ss_pred CEEEecCCCCCCc
Q 013710 337 QVFKVGGNTNLCY 349 (437)
Q Consensus 337 ~~L~l~~N~~~c~ 349 (437)
+.|++++++.+-+
T Consensus 142 ~~L~L~~c~~Itd 154 (176)
T 3e4g_A 142 KYLFLSDLPGVKE 154 (176)
T ss_dssp CEEEEESCTTCCC
T ss_pred CEEECCCCCCCCc
Confidence 6666666665544
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.22 E-value=5e-07 Score=82.77 Aligned_cols=39 Identities=33% Similarity=0.381 Sum_probs=16.9
Q ss_pred CCCCcEEEccCCCCCCC--CCcccCCCcccceeecccccCC
Q 013710 237 LENLQHLNLSSNGLNGE--IPSSIGDLIALKNVSLASNSLS 275 (437)
Q Consensus 237 l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~ 275 (437)
+++|+.|+|++|.+++. ++..+..+++|+.|+|++|+|.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 44455555555554431 1222334444444444444444
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.21 E-value=2.9e-05 Score=75.04 Aligned_cols=113 Identities=12% Similarity=0.107 Sum_probs=87.8
Q ss_pred CCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccccCCCCCccccCCCCCCCeeeccCCcCCCcchhhhcC
Q 013710 229 KIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASNSLSGSVPESMASLTDMVHLDLSSNQLNGTIPRFFSD 308 (437)
Q Consensus 229 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 308 (437)
.....+....+|+.+.+..+ +.......|.++..|+.+.+..+ ++......|.++.+|+.+.+..+ +.......|.+
T Consensus 208 i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~ 284 (379)
T 4h09_A 208 VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSG 284 (379)
T ss_dssp ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTT
T ss_pred Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccc
Confidence 33456677788888888655 33344567888899999999776 55455667888999999999754 55455678899
Q ss_pred CCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecCC
Q 013710 309 LKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGGN 344 (437)
Q Consensus 309 l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~N 344 (437)
+.+|+.+.+.++.++......|..+.+|+.+.+..+
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 999999999999888777788999999999999754
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.21 E-value=7.2e-07 Score=81.70 Aligned_cols=79 Identities=23% Similarity=0.281 Sum_probs=45.8
Q ss_pred CCcccceeecccccCCCC--CccccCCCCCCCeeeccCCcCCCcchhhhcCCC--CCCEEeccCCcCCCCCCC-------
Q 013710 260 DLIALKNVSLASNSLSGS--VPESMASLTDMVHLDLSSNQLNGTIPRFFSDLK--KLRYLNLQNNNFHGVLPF------- 328 (437)
Q Consensus 260 ~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~--~L~~L~L~~N~l~~~~~~------- 328 (437)
++++|+.|+|++|+|++. ++..+..+++|++|+|++|+|.+. ..+..+. +|++|+|++|.+.+..|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 456677777777776642 334445666777777777777643 1222222 677777777776654442
Q ss_pred CcccCCCCCEEE
Q 013710 329 NASILEKLQVFK 340 (437)
Q Consensus 329 ~l~~l~~L~~L~ 340 (437)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 235566666654
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.17 E-value=5e-07 Score=77.00 Aligned_cols=83 Identities=10% Similarity=0.103 Sum_probs=40.1
Q ss_pred cCccEEEccCCcCCCCCChhccCCCCCcEEEccCCC-CCCCCCcccCCC----cccceeeccccc-CCCCCccccCCCCC
Q 013710 214 SNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNG-LNGEIPSSIGDL----IALKNVSLASNS-LSGSVPESMASLTD 287 (437)
Q Consensus 214 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~ 287 (437)
..|+.||++++.++...-..+.++++|++|+|++|. +++..-..+..+ ++|++|+|++|. +++..-..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 345666666665554433445555666666666553 443222223332 245555555542 44333333444455
Q ss_pred CCeeeccCC
Q 013710 288 MVHLDLSSN 296 (437)
Q Consensus 288 L~~L~L~~N 296 (437)
|++|+|+++
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 555555554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.94 E-value=2e-06 Score=74.64 Aligned_cols=87 Identities=13% Similarity=0.221 Sum_probs=52.3
Q ss_pred hhcCCCCCCEEEeecC-CCCCCc---hhHhhcCCcCccEEEeeCCcccccCCcccc------cCccEEEccCCcCCCC--
Q 013710 162 FLSRFVNLTDLTVTNV-PVNASG---LYVIIGNMHKLRSVTISNANVTGYIPKHLH------SNLTHVDFSGNQLKGK-- 229 (437)
Q Consensus 162 ~~~~l~~L~~L~ls~n-~l~~~~---~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~------~~L~~L~Ls~n~l~~~-- 229 (437)
.+.+-..|++|+|++| .+.+.+ +...+..-+.|++|+|++|.+.+.....+. +.|++|+|++|.|...
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3456677888888875 776554 445566667788888888877755444333 5666666666666532
Q ss_pred --CChhccCCCCCcEEEccCC
Q 013710 230 --IPTSITLLENLQHLNLSSN 248 (437)
Q Consensus 230 --~~~~l~~l~~L~~L~L~~n 248 (437)
+.+.+..-+.|++|+|++|
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCC
Confidence 1223334445555555543
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.81 E-value=6.3e-06 Score=71.55 Aligned_cols=88 Identities=11% Similarity=0.156 Sum_probs=39.0
Q ss_pred ccCCCCCcEEEccCCCCCC----CCCcccCCCcccceeecccccCCCC----CccccCCCCCCCeeeccCC---cCCC--
Q 013710 234 ITLLENLQHLNLSSNGLNG----EIPSSIGDLIALKNVSLASNSLSGS----VPESMASLTDMVHLDLSSN---QLNG-- 300 (437)
Q Consensus 234 l~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~N---~l~~-- 300 (437)
+..-+.|+.|+|++|.+.+ .+.+.+..-+.|++|+|++|.|.+. +.+.+..-+.|++|+|++| .+..
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g 145 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQV 145 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHH
Confidence 3334445555555554442 1112233334455555555555432 2233444455666666543 2221
Q ss_pred --cchhhhcCCCCCCEEeccCCc
Q 013710 301 --TIPRFFSDLKKLRYLNLQNNN 321 (437)
Q Consensus 301 --~~~~~l~~l~~L~~L~L~~N~ 321 (437)
.+...+..-+.|+.|+++.|.
T Consensus 146 ~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 146 EMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHhCCCcCeEeccCCC
Confidence 122334444555666555543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.05 E-value=0.00093 Score=53.91 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=36.1
Q ss_pred EEEeeCCccc-ccCCcccccCccEEEccCCcCCCCCChhccCCCCCcEEEccCCCCC
Q 013710 196 SVTISNANVT-GYIPKHLHSNLTHVDFSGNQLKGKIPTSITLLENLQHLNLSSNGLN 251 (437)
Q Consensus 196 ~L~L~~n~l~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 251 (437)
.++.++++++ ..+|..+..+|++|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666665 3456666666777777777776555556666667777777666553
No 165
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=95.24 E-value=0.0045 Score=37.63 Aligned_cols=29 Identities=10% Similarity=0.154 Sum_probs=21.9
Q ss_pred ceEEEEehhHHHHHHHHHHHHHHHHhhcC
Q 013710 409 NKVVLGLAIGLSSIVFLIVFVVLLSKWCG 437 (437)
Q Consensus 409 ~~~~~~~~i~~~~~~~li~~~~~~~~~~r 437 (437)
...++|+++++++.+.+++.+.++++|||
T Consensus 10 ~GaIAGiVvG~v~gv~li~~l~~~~~rrr 38 (38)
T 2k1k_A 10 GGEIVAVIFGLLLGAALLLGILVFRSRRA 38 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCceeeeehHHHHHHHHHHHHHHHHeecC
Confidence 45668888888888887777777777665
No 166
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=93.72 E-value=0.023 Score=35.65 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=14.5
Q ss_pred eEEEEehhHHHHHHHHHHHHHHHHhhc
Q 013710 410 KVVLGLAIGLSSIVFLIVFVVLLSKWC 436 (437)
Q Consensus 410 ~~~~~~~i~~~~~~~li~~~~~~~~~~ 436 (437)
.++.|++.++++++++++.++++++||
T Consensus 12 ~IA~gVVgGv~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 12 SIATGMVGALLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEeehhHHHHHHHHHHHHHHHHhhhh
Confidence 344455555555555555555555554
No 167
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=93.00 E-value=0.023 Score=35.54 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=14.5
Q ss_pred eEEEEehhHHHHHHHHHHHHHHHHhhcC
Q 013710 410 KVVLGLAIGLSSIVFLIVFVVLLSKWCG 437 (437)
Q Consensus 410 ~~~~~~~i~~~~~~~li~~~~~~~~~~r 437 (437)
.++.|++.++++++++++.+++++||||
T Consensus 11 aIA~gVVgGv~~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 11 LIAAGVIGGLFILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred eEEEeehHHHHHHHHHHHHHHHHhhhhh
Confidence 3444555555555555555555555543
No 168
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=91.54 E-value=0.054 Score=33.81 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=15.4
Q ss_pred EEEEehhHHHHHHHHHHHHHHHHhhcC
Q 013710 411 VVLGLAIGLSSIVFLIVFVVLLSKWCG 437 (437)
Q Consensus 411 ~~~~~~i~~~~~~~li~~~~~~~~~~r 437 (437)
.+++.++++++++++.+++.+|+||||
T Consensus 13 ~Ia~~vVGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 13 SIISAVVGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHhheehhh
Confidence 355666665555555555555556553
No 169
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=77.05 E-value=0.69 Score=27.20 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=10.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhcC
Q 013710 416 AIGLSSIVFLIVFVVLLSKWCG 437 (437)
Q Consensus 416 ~i~~~~~~~li~~~~~~~~~~r 437 (437)
++++++++++.+.+.+++||||
T Consensus 14 Vvglll~vii~l~~~~~iRRr~ 35 (35)
T 1iij_A 14 VVGVLLFLILVVVVGILIKRRR 35 (35)
T ss_dssp HHHHHHHHHHTTTTTHHHHHCC
T ss_pred HHHHHHHHHHHHHhheEEeecC
Confidence 3334444444444555566654
No 170
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=66.11 E-value=1.6 Score=25.39 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=17.0
Q ss_pred eEEEEehhHHHHHHHHHHHHHHHHhh
Q 013710 410 KVVLGLAIGLSSIVFLIVFVVLLSKW 435 (437)
Q Consensus 410 ~~~~~~~i~~~~~~~li~~~~~~~~~ 435 (437)
..++|++++-+++.+++.+.++++.|
T Consensus 7 gaIaGIVvgdi~~t~~i~~~vy~~~r 32 (33)
T 2l34_A 7 GVLAGIVVGDLVLTVLIALAVYFLGR 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ceEEeEeHHHHHHHHHHHHHHhheec
Confidence 44567777777777766666665543
No 171
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=65.49 E-value=4.3 Score=23.40 Aligned_cols=20 Identities=20% Similarity=0.134 Sum_probs=7.5
Q ss_pred hHHHHHHHHHHHHHHHHhhc
Q 013710 417 IGLSSIVFLIVFVVLLSKWC 436 (437)
Q Consensus 417 i~~~~~~~li~~~~~~~~~~ 436 (437)
++.++++.++..-+.+|+-|
T Consensus 14 ~gl~vif~~lg~tflywrgr 33 (40)
T 2l9u_A 14 AGLVVIFMMLGGTFLYWRGR 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCceeEEEccc
Confidence 33333333333334444433
No 172
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=56.25 E-value=6.3 Score=24.50 Aligned_cols=25 Identities=16% Similarity=0.390 Sum_probs=12.4
Q ss_pred EEEehhHHHHHHHH-HHHHHHHHhhc
Q 013710 412 VLGLAIGLSSIVFL-IVFVVLLSKWC 436 (437)
Q Consensus 412 ~~~~~i~~~~~~~l-i~~~~~~~~~~ 436 (437)
..+++++++..+++ ++++..++++.
T Consensus 10 ~~~IA~gVVgGv~~~~ii~~~~~~~~ 35 (44)
T 2ks1_B 10 IPSIATGMVGALLLLLVVALGIGLFM 35 (44)
T ss_dssp SSSSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEeehhHHHHHHHHHHHHHHHHh
Confidence 44566666653433 34444445443
No 173
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=54.36 E-value=35 Score=25.25 Aligned_cols=48 Identities=10% Similarity=0.102 Sum_probs=31.4
Q ss_pred CcCCCCCChhccCCCCCcEEEccCCCCCCCCCcccCCCcccceeecccc
Q 013710 224 NQLKGKIPTSITLLENLQHLNLSSNGLNGEIPSSIGDLIALKNVSLASN 272 (437)
Q Consensus 224 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n 272 (437)
..++.+...+|.++.+|+.+.+-.+ ++.....+|.++.+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3445455567778888888877665 33344566777777777777653
No 174
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=59.00 E-value=2.7 Score=25.73 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=16.7
Q ss_pred eEEEEehhHHHHHHHHHHHHHHHHhhc
Q 013710 410 KVVLGLAIGLSSIVFLIVFVVLLSKWC 436 (437)
Q Consensus 410 ~~~~~~~i~~~~~~~li~~~~~~~~~~ 436 (437)
..++|+.++.+++..++++.+++.|||
T Consensus 17 ga~iGL~v~gVai~~vIVvsl~mlRrr 43 (43)
T 2llm_A 17 GAIIGLMVGGVVIATVIVITLVMLKKK 43 (43)
Confidence 556677766666666666666555543
No 175
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=52.12 E-value=4.2 Score=26.46 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=7.5
Q ss_pred EEEehhHHHHHHHHHHHHH
Q 013710 412 VLGLAIGLSSIVFLIVFVV 430 (437)
Q Consensus 412 ~~~~~i~~~~~~~li~~~~ 430 (437)
+++++.|++++.++++++|
T Consensus 13 i~svl~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 13 LLSAFAGLLLLMLLILALW 31 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444433333334444
No 176
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=47.69 E-value=17 Score=21.26 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=17.5
Q ss_pred EEEEehhHHHHHHHHHHHHHHHHhhcC
Q 013710 411 VVLGLAIGLSSIVFLIVFVVLLSKWCG 437 (437)
Q Consensus 411 ~~~~~~i~~~~~~~li~~~~~~~~~~r 437 (437)
...|++++.+-+.+.-+++..|...||
T Consensus 5 lL~GIVlGlipvtl~GLfv~Ay~QyrR 31 (37)
T 1vf5_G 5 LLDGLVLGLVFATLGGLFYAAYQQYKR 31 (37)
T ss_dssp ----CHHHHHHHHHHHHTHHHHHHTCC
T ss_pred hhhhHHHhhHHHHHHHHHHHHHHHHhh
Confidence 456888888888888777777665554
No 177
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=46.75 E-value=4.2 Score=26.54 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=6.4
Q ss_pred EehhHHHHHHHHHHHHH
Q 013710 414 GLAIGLSSIVFLIVFVV 430 (437)
Q Consensus 414 ~~~i~~~~~~~li~~~~ 430 (437)
+++.|++++.++++++|
T Consensus 18 svl~GLllL~li~~~Lw 34 (54)
T 2knc_A 18 GVLGGLLLLTILVLAMW 34 (54)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 178
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=38.92 E-value=42 Score=24.78 Aligned_cols=40 Identities=18% Similarity=0.117 Sum_probs=19.9
Q ss_pred hhhhcCCCCCCEEeccCCcCCCCCCCCcccCCCCCEEEecC
Q 013710 303 PRFFSDLKKLRYLNLQNNNFHGVLPFNASILEKLQVFKVGG 343 (437)
Q Consensus 303 ~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~l~~ 343 (437)
...|.++.+|+.+.+-.+ ++.+....|..+.+|+.+.+.+
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344555555555555443 3334444555555555555543
No 179
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=35.60 E-value=27 Score=20.44 Aligned_cols=25 Identities=20% Similarity=0.417 Sum_probs=15.2
Q ss_pred EEehhHHHHHHHHHHHHHHHHhhcC
Q 013710 413 LGLAIGLSSIVFLIVFVVLLSKWCG 437 (437)
Q Consensus 413 ~~~~i~~~~~~~li~~~~~~~~~~r 437 (437)
.|+++|.+-+.+.-+++..+...||
T Consensus 7 ~GIVlGlipvtlaGLfv~Ay~QyrR 31 (37)
T 1q90_G 7 CGIVLGLVPVTIAGLFVTAYLQYLR 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHhh
Confidence 3667777777666666665554444
No 180
>2lp1_A C99; alzheimer'S D membrane protein, transmembrane Pro; NMR {Homo sapiens}
Probab=30.98 E-value=15 Score=27.80 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=12.7
Q ss_pred EEEEehhHHHHHHHHHHHHHHHHhh
Q 013710 411 VVLGLAIGLSSIVFLIVFVVLLSKW 435 (437)
Q Consensus 411 ~~~~~~i~~~~~~~li~~~~~~~~~ 435 (437)
.++|+.++.+++..++++.+++.++
T Consensus 31 a~igL~v~~vai~~viVv~l~v~rr 55 (122)
T 2lp1_A 31 AIIGLMVGGVVIATVIVITLVMLKK 55 (122)
Confidence 4556665555555444444444443
Done!