Query 013715
Match_columns 437
No_of_seqs 166 out of 637
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 06:39:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013715.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013715hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00835 RanBD Ran-binding doma 100.0 5.8E-35 1.2E-39 253.9 15.1 117 300-418 1-121 (122)
2 smart00160 RanBD Ran-binding d 100.0 3.8E-33 8.1E-38 246.5 14.9 120 296-417 6-130 (130)
3 PF00638 Ran_BP1: RanBP1 domai 100.0 7.7E-33 1.7E-37 238.8 14.4 118 301-420 1-122 (122)
4 COG5171 YRB1 Ran GTPase-activa 100.0 1.1E-31 2.3E-36 247.7 5.8 131 296-427 76-210 (211)
5 KOG2724 Nuclear pore complex c 99.8 1.4E-20 3E-25 192.5 12.9 116 298-418 370-486 (487)
6 KOG0864 Ran-binding protein RA 99.7 1.3E-18 2.8E-23 166.1 -1.0 130 295-425 42-178 (215)
7 PF08911 NUP50: NUP50 (Nucleop 99.6 7E-17 1.5E-21 130.7 1.4 64 12-79 1-72 (72)
8 KOG0866 Ran-binding protein RA 99.2 7.8E-12 1.7E-16 125.4 2.5 114 296-413 143-261 (327)
9 cd00837 EVH1 EVH1 (Enabled, Va 99.2 3.9E-10 8.4E-15 96.5 12.4 99 309-417 1-103 (104)
10 PF00568 WH1: WH1 domain; Int 98.7 5E-07 1.1E-11 78.0 12.9 100 309-418 8-111 (111)
11 cd01207 Ena-Vasp Enabled-VASP- 98.5 1.3E-06 2.9E-11 76.7 11.5 103 309-421 1-110 (111)
12 cd01206 Homer Homer type EVH1 98.3 3.3E-06 7.1E-11 74.1 9.5 102 309-420 3-109 (111)
13 smart00461 WH1 WASP homology r 97.6 0.00082 1.8E-08 58.0 11.4 99 309-417 3-105 (106)
14 KOG2724 Nuclear pore complex c 96.0 0.17 3.7E-06 53.9 14.4 49 11-63 2-50 (487)
15 PF08553 VID27: VID27 cytoplas 93.8 0.86 1.9E-05 52.1 13.1 103 308-418 246-352 (794)
16 cd01205 WASP WASP-type EVH1 do 92.8 2.9 6.4E-05 36.8 12.2 97 310-417 5-104 (105)
17 KOG4590 Signal transduction pr 89.6 0.61 1.3E-05 49.6 5.7 88 325-422 8-101 (409)
18 KOG3671 Actin regulatory prote 87.2 1 2.2E-05 49.0 5.5 89 319-418 47-139 (569)
19 PF06058 DCP1: Dcp1-like decap 86.4 15 0.00033 32.8 11.7 96 310-417 21-121 (122)
20 PF11531 CARM1: Coactivator-as 62.5 33 0.00071 30.9 6.9 57 356-421 50-106 (114)
21 PF07933 DUF1681: Protein of u 55.8 59 0.0013 30.8 7.8 108 309-421 3-125 (160)
22 COG5167 VID27 Protein involved 54.1 91 0.002 35.1 9.9 101 310-418 229-332 (776)
23 KOG0866 Ran-binding protein RA 52.6 5.2 0.00011 41.5 0.4 71 309-384 242-314 (327)
24 PF07576 BRAP2: BRCA1-associat 32.5 54 0.0012 29.0 3.5 25 393-417 53-77 (110)
25 PHA02095 hypothetical protein 25.5 2E+02 0.0044 24.4 5.4 73 348-421 1-82 (84)
26 PF15411 PH_10: Pleckstrin hom 23.4 1.5E+02 0.0033 26.3 4.7 22 393-414 95-116 (116)
27 KOG0864 Ran-binding protein RA 20.6 16 0.00035 35.6 -2.2 117 217-341 92-211 (215)
No 1
>cd00835 RanBD Ran-binding domain. Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.
Probab=100.00 E-value=5.8e-35 Score=253.89 Aligned_cols=117 Identities=43% Similarity=0.706 Sum_probs=109.4
Q ss_pred cccccCcccceeEEEEeeeEEEecc--CCccccceEEEEEEeecCCCCceEEEEEeccceeEEeccccCCCCcccccC--
Q 013715 300 VVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMD-- 375 (437)
Q Consensus 300 Vev~TGEEnEevLFs~RAKLyrf~~--~eWKERGvG~LKLlk~ke~t~k~RIVMRrDgtlKVlLN~~I~~~Mkvt~~~-- 375 (437)
|+|.||||+|++||++|||||+|++ ++|+|||+|+||||++++ ++++|||||+++++||||||+|+++|++++++
T Consensus 1 v~v~tGEE~E~~if~~r~KLy~~~~~~~~WkerG~G~lki~~~k~-~~~~RivmR~d~~~kv~lN~~i~~~~~~~~~~~~ 79 (122)
T cd00835 1 VEVKTGEEDEEVIFSVRAKLYRFDDETKEWKERGVGELKILKHKD-TGKYRLLMRRDQVLKLCLNHKLVPGMKLQPMGNS 79 (122)
T ss_pred CCcccCCcCcEEEEEEEeEEEEEcCCCCCCeeceEEEEEEEEcCC-CCcEEEEEEeCCccEEEEeeEecCCcEEeecCCC
Confidence 6799999999999999999999987 899999999999999986 89999999999999999999999999999987
Q ss_pred CcceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHHH
Q 013715 376 KKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHK 418 (437)
Q Consensus 376 kKsV~ftavnd~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK 418 (437)
.++|+|+|++. +++++++++|+|||+++++|++|+++|++++
T Consensus 80 ~k~~~~~~~d~-~~~~~~~~~~~lrfk~~~~a~~f~~~~~~~~ 121 (122)
T cd00835 80 DKSIVWAAMDF-SDDEPKPETFAIRFKTEEIADEFKEAIEEAK 121 (122)
T ss_pred CcEEEEEeeec-CCCCCcEEEEEEEECCHHHHHHHHHHHHHhh
Confidence 79999998863 4545789999999999999999999999986
No 2
>smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
Probab=100.00 E-value=3.8e-33 Score=246.53 Aligned_cols=120 Identities=28% Similarity=0.582 Sum_probs=109.1
Q ss_pred CCcccccccCcccceeEEEEeeeEEEec--cCCccccceEEEEEEeecCCC-CceEEEEEeccceeEEeccccCCCCccc
Q 013715 296 SMQEVVVETGEENEKVVFSADSVLFEFL--DGSWKERGKGELKVNVSTNAT-GRARLLMRARGNYRLILNASLYPDMKLT 372 (437)
Q Consensus 296 ~l~eVev~TGEEnEevLFs~RAKLyrf~--~~eWKERGvG~LKLlk~ke~t-~k~RIVMRrDgtlKVlLN~~I~~~Mkvt 372 (437)
.|++|++.+|||+|++||++|||||+|+ ++.|++||+|+||||++++ + +++|||||+++++||||||+|+++|+++
T Consensus 6 ~l~~ve~~tgEE~E~~lf~~r~KL~~~~~~~~~WkerG~G~lki~~~~~-~~~~~RivmR~~~~~kv~lN~~i~~~~~~~ 84 (130)
T smart00160 6 PLPDVEVKTGEEDEEVIFSARAKLYRFANDKKEWKERGVGDLKILKSKD-NGGKVRIVMRRDGVLKVCANHPIFKSMTLK 84 (130)
T ss_pred cCccccccCCCcCeEEEEEEEeEEEEEcCCCCCCeeccEEEEEEEEcCC-CCCeEEEEEEECCCceEEeccEecCCcEEe
Confidence 5788999999999999999999999998 4799999999999999987 6 9999999999999999999999999999
Q ss_pred ccC--CcceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHH
Q 013715 373 NMD--KKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAH 417 (437)
Q Consensus 373 ~~~--kKsV~ftavnd~sEgk~kl~tylLRFKtaE~AdeF~kaIeea 417 (437)
++. .+.++|++.+ ++++..++++|+|||+++++|++|+++|+++
T Consensus 85 ~~~~~~~~~~~~~~d-~~d~~~~~~~~~irfk~~e~a~~f~~~~~ea 130 (130)
T smart00160 85 PLAGSNRALKWTPED-FADDIPKLVLYAVRFKTKEEADSFKNIFEEA 130 (130)
T ss_pred ecCCCcceEEEeeee-cCCCCCceEEEEEEeCCHHHHHHHHHHHHhC
Confidence 764 4678887654 4566778999999999999999999999875
No 3
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....
Probab=100.00 E-value=7.7e-33 Score=238.76 Aligned_cols=118 Identities=33% Similarity=0.639 Sum_probs=103.4
Q ss_pred ccccCcccceeEEEEeeeEEEecc--CCccccceEEEEEEeecCCCCceEEEEEeccceeEEeccccCCCCcccccC--C
Q 013715 301 VVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMD--K 376 (437)
Q Consensus 301 ev~TGEEnEevLFs~RAKLyrf~~--~eWKERGvG~LKLlk~ke~t~k~RIVMRrDgtlKVlLN~~I~~~Mkvt~~~--k 376 (437)
+|+||||+|++||++|||||+|+. ++|++||+|+|||++|++ ++++|||||+++++||||||+|+++|+++++. .
T Consensus 1 ev~tgEE~E~~l~~~r~Kl~~~~~~~~~W~erG~G~l~i~~~k~-~~~~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~~~ 79 (122)
T PF00638_consen 1 EVKTGEEDEEILFEVRAKLYRFDKEDKEWKERGVGTLKILKHKE-TGKYRLVMRRDGTGKVLLNHPIFKGMKLKPMKGSE 79 (122)
T ss_dssp CCCHSSSSEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETT-SCEEEEEEEETTTTEEEEEEE--TTC-EEESTTTT
T ss_pred CCcccccCcEEEEEEEEEEEEEeCCCCCccccceeEEEEEEccC-CcceEEEEEEcccCceeEEEEecCCceecccccCC
Confidence 588999999999999999999984 799999999999999987 79999999999999999999999999998764 5
Q ss_pred cceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHHHHh
Q 013715 377 KGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDK 420 (437)
Q Consensus 377 KsV~ftavnd~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK~~ 420 (437)
+++.|++.+. .+..+++.+|+|||++++.|++|+++|++++..
T Consensus 80 ~~~~~~~~~~-~~~~~~~~~~~irf~~~e~a~~f~~~i~e~~~~ 122 (122)
T PF00638_consen 80 KSLVWTAIDY-ADEEGKPETYLIRFKSAEDADEFKKKIEEAKEK 122 (122)
T ss_dssp TEEEEEEEEC-TTSSSEEEEEEEE-SSHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEeccc-cCCCCceEEEEEEECCHHHHHHHHHHHHHHhcC
Confidence 6789988654 455678999999999999999999999999863
No 4
>COG5171 YRB1 Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion]
Probab=99.97 E-value=1.1e-31 Score=247.73 Aligned_cols=131 Identities=29% Similarity=0.504 Sum_probs=125.2
Q ss_pred CCcccccccCcccceeEEEEeeeEEEecc--CCccccceEEEEEEeecCCCCceEEEEEeccceeEEeccccCCCCcccc
Q 013715 296 SMQEVVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTN 373 (437)
Q Consensus 296 ~l~eVev~TGEEnEevLFs~RAKLyrf~~--~eWKERGvG~LKLlk~ke~t~k~RIVMRrDgtlKVlLN~~I~~~Mkvt~ 373 (437)
.++.|.+++-||+|.+||.+|||||||+. +.|+|||.|+++|++|+. ++++||+||||++||||+||+|.|.|++++
T Consensus 76 ~l~~v~~ktneedE~vlfK~RaKLfrFd~~akewkERgtGd~~~lkhkk-tnk~ri~MrRDktlklcaNH~i~Pe~kl~P 154 (211)
T COG5171 76 ELQRVHLKTNEEDETVLFKARAKLFRFDEEAKEWKERGTGDMIILKHKK-TNKARITMRRDKTLKLCANHFINPEFKLQP 154 (211)
T ss_pred HHHhhhhhccccchhhhhhhhhhheeehHHHHHHHhcCCCcEEEEeccc-cCceEEEEeechhhhhhhhhccCcceeccC
Confidence 57789999999999999999999999985 799999999999999997 999999999999999999999999999998
Q ss_pred cC--CcceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHHHHhhhcccCC
Q 013715 374 MD--KKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKTTAVLKT 427 (437)
Q Consensus 374 ~~--kKsV~ftavnd~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK~~~~~~lkt 427 (437)
+. +++|+|+|..+..+++.+.++|+|||.+.++|+.|...++..+..|+..|||
T Consensus 155 nvgsdrsWvw~~taD~~Egea~a~tFairF~s~Ena~~FkEefek~qe~N~Kalk~ 210 (211)
T COG5171 155 NVGSDRSWVWMSTADTVEGEAKAQTFAIRFYSEENAKRFKEEFEKGQEHNEKALKT 210 (211)
T ss_pred CCCcccceEEEeecccccCcceeeEEEEeeccHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 73 8999999999999999999999999999999999999999999999999987
No 5
>KOG2724 consensus Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.4e-20 Score=192.49 Aligned_cols=116 Identities=22% Similarity=0.380 Sum_probs=101.0
Q ss_pred cccccccCcccceeEEEEeeeEEEeccCCccccceEEEEEEeecCCCCceEEEEEeccc-eeEEeccccCCCCcccccCC
Q 013715 298 QEVVVETGEENEKVVFSADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLLMRARGN-YRLILNASLYPDMKLTNMDK 376 (437)
Q Consensus 298 ~eVev~TGEEnEevLFs~RAKLyrf~~~eWKERGvG~LKLlk~ke~t~k~RIVMRrDgt-lKVlLN~~I~~~Mkvt~~~k 376 (437)
++|++..--| ++.+|..|||+|++.+++|++||||+|||.... .++..||+|.+.. ++||||.+|+++|+++++++
T Consensus 370 pkve~~ev~e-dda~ysKkckvfykKdKEf~dkGvgtl~lkp~~--~~k~qlLvradtnlGnilLN~Ll~kgMkctr~gk 446 (487)
T KOG2724|consen 370 PKVETVEVQE-DDAVYSKKCKVFYKKDKEFTDKGVGTLHLKPND--RGKFQLLVRADTNLGNILLNSLLNKGMKCTRVGK 446 (487)
T ss_pred CeeEeecccC-ccchhccccceEEEecccccccccceeeccccc--ccceeeeehhccchhHHHHHHhhcCCCcceeccC
Confidence 4555443333 589999999999999999999999999999986 3899999999875 66999999999999999999
Q ss_pred cceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHHH
Q 013715 377 KGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHK 418 (437)
Q Consensus 377 KsV~ftavnd~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK 418 (437)
++|++.|+..... ..+.+||||||+++.|++|.++|.++.
T Consensus 447 nnvlIvcvp~~e~--t~p~TmLIRvktad~aD~L~~kI~E~a 486 (487)
T KOG2724|consen 447 NNVLIVCVPPSES--TEPATMLIRVKTADGADKLTDKILEVA 486 (487)
T ss_pred CceEEEEeCCccc--ccceeEEEEecccchHHHHHHHHHhhc
Confidence 9999999964322 468999999999999999999999874
No 6
>KOG0864 consensus Ran-binding protein RANBP1 and related RanBD domain proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=1.3e-18 Score=166.11 Aligned_cols=130 Identities=25% Similarity=0.438 Sum_probs=114.7
Q ss_pred CCCcccccccCcccceeEEEEee-eEEEecc--CCccccceEEEEEEeecCCCCceEEEEEeccc-eeEEeccccCCCCc
Q 013715 295 PSMQEVVVETGEENEKVVFSADS-VLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGN-YRLILNASLYPDMK 370 (437)
Q Consensus 295 p~l~eVev~TGEEnEevLFs~RA-KLyrf~~--~eWKERGvG~LKLlk~ke~t~k~RIVMRrDgt-lKVlLN~~I~~~Mk 370 (437)
..+..+.+.++++.|.++|..|+ +||+|+. .+|++||.|.++|++|++ ++..|+|||+|++ ++||+||+|++.|+
T Consensus 42 ~~~~~~~v~t~e~~e~~~~~~~s~~l~~f~~~~kq~kerG~g~~~~~kn~~-~g~~r~~m~rdst~~~v~sn~~~~~~~~ 120 (215)
T KOG0864|consen 42 EELEKVEVKTGEEDEEIIFDQRSEKLYVFDNETKQWKERGTGKVKLLKNKD-TGSTRDLMRRDSTKLKVCSNHFIGPSFK 120 (215)
T ss_pred ccccchhhhccchhhhhhhhhhhhhHHhhhhhhhhhhccCCcceEeeecCC-CCcceeeeeecccchhhcccccccCccc
Confidence 35667999999999999999996 9999985 799999999999999996 9999999999999 89999999999999
Q ss_pred ccccC--CcceEEEeeccCCCCCccceEEEEEeCCHHH-HHHHHHHHHHHHHhhhccc
Q 013715 371 LTNMD--KKGITFACINSATEGKSGLSTFALKFRDASI-VEEFQTAVAAHKDKTTAVL 425 (437)
Q Consensus 371 vt~~~--kKsV~ftavnd~sEgk~kl~tylLRFKtaE~-AdeF~kaIeeaK~~~~~~l 425 (437)
++++. .++++|.+..+..++.....+|.|||.+.+. ...|...|+.++...+.+.
T Consensus 121 ~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~~e~s~~~f~~~~e~~~~~~~~~e 178 (215)
T KOG0864|consen 121 LEPPAWEEDSGKWNSLADFSETQPKAEKLAIRFAKVESSGKAFKEKIEEAKEGIEENE 178 (215)
T ss_pred ccCCcccCcchhhhhhhhhcccccchhHHHHHhhhhcccchhhHhhhhhhhhhhhhhh
Confidence 99873 5667776666777778889999999999988 8899999999887776433
No 7
>PF08911 NUP50: NUP50 (Nucleoporin 50 kDa); InterPro: IPR015007 This entry represents a domain found in Nup2, 50 and 61, which are components of the nuclear pore complex. Nucleoporin 50 kDa (NUP50) acts as a cofactor for the importin-alpha:importin-beta heterodimer, which in turn allows for transportation of many nuclear-targeted proteins through nuclear pore complexes. The C terminus of NUP50 binds importin-beta through RAN-GTP, the N terminus binds the C terminus of importin-alpha, while a central domain binds importin-beta. NUP50:importin-alpha:importin-beta then binds cargo and can stimulate nuclear import. The N-terminal domain of NUP50 is also able to actively displace nuclear localisation signals from importin-alpha []. NUP2 encodes a non-essential nuclear pore protein that has a central domain similar to those of Nsp1 and Nup1[, ]. Transport of macromolecules between the nucleus and the cytoplasm of eukaryotic cells occurs through the nuclear pore complex (NPC), a large macromolecular complex that spans the nuclear envelope [, , ]. The structure of the vertebrate NPC has been studied extensively; recent reviews include [, , , ]. The yeast NPC shares several features with the vertebrate NPC, despite being smaller and less elaborate [, ]. Many yeast nuclear pore proteins, or nucleoporins, have been identified by a variety of genetic approaches [, , , ]. nup2 mutants show genetic interactions with nsp1 and nup1 conditional alleles [, ]. Nup1 interacts with the nuclear import factor Srp1 [] and with the small GTPase Ran (encoded by GSP1) [].; GO: 0005643 nuclear pore; PDB: 3TJ3_D 1UN0_D 2C1T_D 2C1M_B.
Probab=99.63 E-value=7e-17 Score=130.70 Aligned_cols=64 Identities=45% Similarity=0.669 Sum_probs=18.8
Q ss_pred cccccccccccCCCCCCCccccchhcccchhhhhHHHhhccceeeeccCC--------CCCCCCCCCccceeecCC
Q 013715 12 KKRAAGRELSRDNPGLDDEEDSSELESGTFKKATDEVLATRRIVKVRRNQ--------TASTPSSNPFAGIRLVPS 79 (437)
Q Consensus 12 ~KR~a~~qi~~d~~~~~~~~d~~~~~~gtf~~as~ev~a~r~ivk~r~~~--------~~~~~~~npf~~i~~~~~ 79 (437)
.||+|+.||||||+.. | |+ +.+.|+|++||++||++|||+|+||+. +++.+..|||+++.+.|+
T Consensus 1 aKR~A~~qlt~dn~d~--e-d~-~~e~g~f~~AS~evL~~RkI~k~krr~~~~~~~~~~~~~~~~~~F~g~~~~~~ 72 (72)
T PF08911_consen 1 AKRGADSQLTRDNWDE--E-DE-DEEAGTFKRASEEVLAKRKIKKPKRRRAAGASSSASSSSSAFSGFAGFKSPPS 72 (72)
T ss_dssp -----SS---TTTSSS---------------B--HHHHHCS-S-SB--TTT-------------------------
T ss_pred CcccccccccccCccc--c-cc-cccCCCcccCCHHHhhcceeccccccccccccCCCCCcCcccCCCcCCCcCCC
Confidence 4999999999999932 3 33 778999999999999999999998875 233345899999998874
No 8
>KOG0866 consensus Ran-binding protein RANBP3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=7.8e-12 Score=125.39 Aligned_cols=114 Identities=28% Similarity=0.526 Sum_probs=96.3
Q ss_pred CCcccccccCcccceeEEEEeeeEEEecc--CCccccceEEEEEEeecCC---CCceEEEEEeccceeEEeccccCCCCc
Q 013715 296 SMQEVVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNA---TGRARLLMRARGNYRLILNASLYPDMK 370 (437)
Q Consensus 296 ~l~eVev~TGEEnEevLFs~RAKLyrf~~--~eWKERGvG~LKLlk~ke~---t~k~RIVMRrDgtlKVlLN~~I~~~Mk 370 (437)
....||+.+|||+|.++|...||||.|++ ..|.+||+|.||++..... +...|||||..+++||+||..||..|.
T Consensus 143 ~~~aVE~~tgee~e~n~~d~~ck~f~f~k~~~sw~e~g~~~lr~n~~as~~~~~~~~r~vfrt~~slrv~~n~kv~~~m~ 222 (327)
T KOG0866|consen 143 GLSAVEVITGEEDESNKLDMPCKLFAFDKPSQSWVERGRSNLRDNDMASTGDGTTQSRLVFRTSSSLRVILNTKVWAAMQ 222 (327)
T ss_pred cceeeeeecCccCccceeccchhhhhccccchhhhhhccccccchhhhhccCCcccceeEEeccCcceeecchHHHHHHH
Confidence 46789999999999999999999999986 5899999999999987641 245999999999999999999999999
Q ss_pred ccccCCcceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHH
Q 013715 371 LTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTA 413 (437)
Q Consensus 371 vt~~~kKsV~ftavnd~sEgk~kl~tylLRFKtaE~AdeF~ka 413 (437)
+.+.+.++|++.++.. ++ .+...|+|+++... .+.+++.
T Consensus 223 ~ek~sq~~ir~~a~~~--e~-~~v~vFl~~~~~~r-td~i~~s 261 (327)
T KOG0866|consen 223 IEKASQKSIRITAMDT--EG-QGVKVFLISASSKR-TDQIYKS 261 (327)
T ss_pred Hhhhcccceeeccccc--cC-CcceEEEeeccccc-hhhhhhh
Confidence 9999999999998753 33 26889999997543 3444443
No 9
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=99.17 E-value=3.9e-10 Score=96.50 Aligned_cols=99 Identities=16% Similarity=0.257 Sum_probs=87.9
Q ss_pred ceeEEEEeeeEEEecc--CCcccc--ceEEEEEEeecCCCCceEEEEEeccceeEEeccccCCCCcccccCCcceEEEee
Q 013715 309 EKVVFSADSVLFEFLD--GSWKER--GKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACI 384 (437)
Q Consensus 309 EevLFs~RAKLyrf~~--~eWKER--GvG~LKLlk~ke~t~k~RIVMRrDgtlKVlLN~~I~~~Mkvt~~~kKsV~ftav 384 (437)
+.+|+.++|.||.++. +.|..+ |+|.|.|.++.. .+.+||+||+-+..+|+||+.|+++|.+....++...|...
T Consensus 1 ~~~l~~~~a~v~~~~~~~~~W~~~~~~~g~v~~~~d~~-~~~y~i~~~~~~~~~vv~~~~l~~~~~y~~~~~~Fh~w~~~ 79 (104)
T cd00837 1 EQIISTAVAQVYTADPSTGKWVPASGGTGAVSLVKDST-RNTYRIRGVDIQDQKVIWNQEIYKGLKYTQATPFFHQWEDD 79 (104)
T ss_pred CceEEEEEEEEEEECCCCCceEECCCCeEEEEEEEECC-CCEEEEEEEecCCCeEEEEEEecCCcEEeecCCeEEEEEcC
Confidence 3579999999999976 899999 999999999975 78899999999999999999999999999877777777642
Q ss_pred ccCCCCCccceEEEEEeCCHHHHHHHHHHHHHH
Q 013715 385 NSATEGKSGLSTFALKFRDASIVEEFQTAVAAH 417 (437)
Q Consensus 385 nd~sEgk~kl~tylLRFKtaE~AdeF~kaIeea 417 (437)
-..|-|.|.+.++|+.|.+.|.++
T Consensus 80 ---------~~~~GL~F~se~eA~~F~~~v~~~ 103 (104)
T cd00837 80 ---------NCVYGLNFASEEEAAQFRKKVLEA 103 (104)
T ss_pred ---------CcEEEEeeCCHHHHHHHHHHHHhc
Confidence 247999999999999999999875
No 10
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=98.66 E-value=5e-07 Score=77.96 Aligned_cols=100 Identities=14% Similarity=0.196 Sum_probs=86.3
Q ss_pred ceeEEEEeeeEEEecc--C-Cccc-cceEEEEEEeecCCCCceEEEEEeccceeEEeccccCCCCcccccCCcceEEEee
Q 013715 309 EKVVFSADSVLFEFLD--G-SWKE-RGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACI 384 (437)
Q Consensus 309 EevLFs~RAKLyrf~~--~-eWKE-RGvG~LKLlk~ke~t~k~RIVMRrDgtlKVlLN~~I~~~Mkvt~~~kKsV~ftav 384 (437)
..+|+.++|.||..+. + .|.- .+.|.|.|.++.. ...+||+++.-+..++++|+.|+++|.++...+....|...
T Consensus 8 ~~~i~~~vA~v~~~~p~~~~~W~~~~~~g~v~~v~d~~-~~~y~I~~~~~~~~~~v~e~~l~~~~~Y~~~~~~Fh~f~~~ 86 (111)
T PF00568_consen 8 CQSIATAVAQVYQADPDTKRQWSPVKGTGVVCFVKDNS-RRSYFIRLYDLQDGKVVWEQELYPGFVYTKARPFFHQFEDD 86 (111)
T ss_dssp EEEEEEEEEEEEEEETTTSESEEESSSEEEEEEEEETT-TTEEEEEEEETTTTEEEEEEEESTT-EEEEESSSEEEEEET
T ss_pred ceEEEEEEEEEEEEEcCCCCcEeeCCeEEEEEEEEECC-CCEEEEEEEEccccEEEEEeEecCCCEEEeCCCcEEEEEeC
Confidence 3789999999999953 4 5999 9999999999875 68899999997799999999999999999877777777742
Q ss_pred ccCCCCCccceEEEEEeCCHHHHHHHHHHHHHHH
Q 013715 385 NSATEGKSGLSTFALKFRDASIVEEFQTAVAAHK 418 (437)
Q Consensus 385 nd~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK 418 (437)
-..|-|.|.+.++|..|...|++.|
T Consensus 87 ---------~~~~GLnF~se~eA~~F~~~v~~~~ 111 (111)
T PF00568_consen 87 ---------DCVYGLNFASEEEADQFYKKVQEAK 111 (111)
T ss_dssp ---------TCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred ---------CeEEEEecCCHHHHHHHHHHHhccC
Confidence 1389999999999999999999875
No 11
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=98.51 E-value=1.3e-06 Score=76.67 Aligned_cols=103 Identities=14% Similarity=0.253 Sum_probs=87.8
Q ss_pred ceeEEEEeeeEEEecc--CCccccceE-----EEEEEeecCCCCceEEEEEeccceeEEeccccCCCCcccccCCcceEE
Q 013715 309 EKVVFSADSVLFEFLD--GSWKERGKG-----ELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITF 381 (437)
Q Consensus 309 EevLFs~RAKLyrf~~--~eWKERGvG-----~LKLlk~ke~t~k~RIVMRrDgtlKVlLN~~I~~~Mkvt~~~kKsV~f 381 (437)
|..||++||.+|.|++ +.|.--|-| .+.|.++.. .+-+||+-|+-.-.++++|..|+++|+++......-.|
T Consensus 1 e~~i~~~rA~Vm~~d~~tk~W~P~~~~~~~ls~V~~~~~~~-~~~yrIvg~~~~~~~~v~e~~l~~~l~y~k~~p~Fh~w 79 (111)
T cd01207 1 EQSICQARASVMVYDDSNKKWVPAGGGSQGFSRVQIYHHPR-NNTFRVVGRKLQDHQVVINCAIVKGLKYNQATPTFHQW 79 (111)
T ss_pred CCceEEEEEEeeEEcCCCCcEEcCCCCCCCcceEEEEEcCC-CCEEEEEEeecCCCcEEEEEEecCCceeeecCCcceee
Confidence 5679999999999985 679987764 788888864 78999999998788999999999999999877777777
Q ss_pred EeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHHHHhh
Q 013715 382 ACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKT 421 (437)
Q Consensus 382 tavnd~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK~~~ 421 (437)
... -+.|=|-|.+.++|..|...|+.+.+.+
T Consensus 80 ~~~---------~~v~GLnF~Se~eA~~F~~~v~~Al~~L 110 (111)
T cd01207 80 RDA---------RQVYGLNFGSKEDATMFASAMLSALEVL 110 (111)
T ss_pred ecC---------CeEEeeccCCHHHHHHHHHHHHHHHHhh
Confidence 631 2689999999999999999999987643
No 12
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=98.33 E-value=3.3e-06 Score=74.08 Aligned_cols=102 Identities=18% Similarity=0.299 Sum_probs=84.0
Q ss_pred ceeEEEEeeeEEEecc---CCccccceEE--EEEEeecCCCCceEEEEEeccceeEEeccccCCCCcccccCCcceEEEe
Q 013715 309 EKVVFSADSVLFEFLD---GSWKERGKGE--LKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFAC 383 (437)
Q Consensus 309 EevLFs~RAKLyrf~~---~eWKERGvG~--LKLlk~ke~t~k~RIVMRrDgtlKVlLN~~I~~~Mkvt~~~kKsV~fta 383 (437)
|..||++||.+|.|++ +.|.--|-+. ++|..+.. ..-+|||-|.+ .++|||..|.++|+++....+.-.|.-
T Consensus 3 E~~I~~arA~V~~yd~~tKk~WvPs~~~~~~V~~y~~~~-~ntfRIi~~~~--~~~iINc~i~~~~~y~kas~~FhQWrD 79 (111)
T cd01206 3 EQPIFSTRAHVFQIDPKTKKNWIPASKHAVTVSYFYDST-RNVYRIISVGG--TKAIINSTITPNMTFTKTSQKFGQWAD 79 (111)
T ss_pred ccccceeeeEEEEECCCCcceeEeCCCCceeEEEEecCC-CcEEEEEEecC--cEEEEeccccCCcceeecccccccccc
Confidence 6789999999999986 4898887774 44455654 78999999876 499999999999999998777766652
Q ss_pred eccCCCCCccceEEEEEeCCHHHHHHHHHHHHHHHHh
Q 013715 384 INSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDK 420 (437)
Q Consensus 384 vnd~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK~~ 420 (437)
. -.-+.|=|-|.+.++++.|...|++.++.
T Consensus 80 ~-------R~~tVyGLnF~Sk~ea~~F~~~f~~~~~~ 109 (111)
T cd01206 80 S-------RANTVYGLGFSSEQQLTKFAEKFQEVKEA 109 (111)
T ss_pred c-------ccceeeecccCCHHHHHHHHHHHHHHHHh
Confidence 1 11378999999999999999999999865
No 13
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=97.63 E-value=0.00082 Score=57.99 Aligned_cols=99 Identities=16% Similarity=0.282 Sum_probs=78.2
Q ss_pred ceeEEEEeeeEEEecc--CCccccceE-EEEEEeec-CCCCceEEEEEeccceeEEeccccCCCCcccccCCcceEEEee
Q 013715 309 EKVVFSADSVLFEFLD--GSWKERGKG-ELKVNVST-NATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACI 384 (437)
Q Consensus 309 EevLFs~RAKLyrf~~--~eWKERGvG-~LKLlk~k-e~t~k~RIVMRrDgtlKVlLN~~I~~~Mkvt~~~kKsV~ftav 384 (437)
+.+++..+|..+.|+. +.|.-.|.| -+.|.+.. ....-+||+-++.+. +|++|+.|+++|.++...+..-.|..
T Consensus 3 ~~~~~~~~avV~~y~~~~~~W~~~~~gg~~~~~~~~~~~~~~~ri~~~~~~~-~vv~e~ely~~~~y~~~~~~Fh~f~~- 80 (106)
T smart00461 3 SQCIILARAVVQLYDADTKKWVPTGEGGAANLVIDKNQRSYFFRIVGIKGQD-KVIWNQELYKNFKYNQATPTFHQWAD- 80 (106)
T ss_pred CCCEEEEEEEEEEEeCCCCCeEECCCCCEEEEEEEecCCeEEEEEEEecCCC-eEEEEEeccCCCEEeecCCceEEEEe-
Confidence 4567778887777764 789999999 77777643 226678999888755 99999999999999987666666663
Q ss_pred ccCCCCCccceEEEEEeCCHHHHHHHHHHHHHH
Q 013715 385 NSATEGKSGLSTFALKFRDASIVEEFQTAVAAH 417 (437)
Q Consensus 385 nd~sEgk~kl~tylLRFKtaE~AdeF~kaIeea 417 (437)
+ -..|=|-|.+.++|..|.+.|.++
T Consensus 81 ----~----~~~~GLnF~se~EA~~F~~~v~~~ 105 (106)
T smart00461 81 ----D----KCVYGLNFASEEEAKKFRKKVLKA 105 (106)
T ss_pred ----C----CeEEEeecCCHHHHHHHHHHHHhc
Confidence 1 257999999999999999999865
No 14
>KOG2724 consensus Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.01 E-value=0.17 Score=53.86 Aligned_cols=49 Identities=41% Similarity=0.413 Sum_probs=40.5
Q ss_pred ccccccccccccCCCCCCCccccchhcccchhhhhHHHhhccceeeeccCCCC
Q 013715 11 SKKRAAGRELSRDNPGLDDEEDSSELESGTFKKATDEVLATRRIVKVRRNQTA 63 (437)
Q Consensus 11 s~KR~a~~qi~~d~~~~~~~~d~~~~~~gtf~~as~ev~a~r~ivk~r~~~~~ 63 (437)
+-||.|...|+--+..+ ++ +-++-|+|.-|.+|+|.+|.|+|.||+..-
T Consensus 2 ~~krmA~s~l~~~nwdl--E~--Efle~gnf~~aeee~lktr~ikka~r~~vg 50 (487)
T KOG2724|consen 2 SEKRMAMSRLRDKNWDL--EA--EFLEVGNFYFAEEEHLKTRGIKKAYRDHVG 50 (487)
T ss_pred hhhhhhhhhhhhcccch--hh--hHHHhccccccchhhhcchhhhhHHhhhhc
Confidence 46899999998888776 33 447899999999999999999999776443
No 15
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=93.76 E-value=0.86 Score=52.12 Aligned_cols=103 Identities=17% Similarity=0.273 Sum_probs=75.8
Q ss_pred cceeEEEEeeeEEEecc--CCccccceE-EEEEEeecCCCCceEEEEEeccceeEEeccccCCCCccccc-CCcceEEEe
Q 013715 308 NEKVVFSADSVLFEFLD--GSWKERGKG-ELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNM-DKKGITFAC 383 (437)
Q Consensus 308 nEevLFs~RAKLyrf~~--~eWKERGvG-~LKLlk~ke~t~k~RIVMRrDgtlKVlLN~~I~~~Mkvt~~-~kKsV~fta 383 (437)
..+.++...|+||.|+. +.|.-..-. .++|.+. +++-..++-.+..+.+|++.|.+.|.+.-. .-.+++|..
T Consensus 246 ~~~~~~~~~~~L~l~d~~~~~f~lq~~~v~~~i~~~----~~~~y~l~i~~~~~~~l~~~v~s~mNp~F~~e~lSFiFN~ 321 (794)
T PF08553_consen 246 AGEILASESAELYLYDPPTGKFVLQDSSVTAKIIET----GKWEYWLQIEGKDKIWLGQPVSSDMNPVFNFEHLSFIFNY 321 (794)
T ss_pred ccceeeeeeEEEEEEcCCCceEEEecCcEEEEEEEc----CCeEEEEEEecCCceEEeeeccCCcCeEEEcceeEEEEEe
Confidence 33489999999999974 788877533 3555543 455555666666778999999999998754 234566665
Q ss_pred eccCCCCCccceEEEEEeCCHHHHHHHHHHHHHHH
Q 013715 384 INSATEGKSGLSTFALKFRDASIVEEFQTAVAAHK 418 (437)
Q Consensus 384 vnd~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK 418 (437)
... . +..-.|+|||++.+....|...+..|.
T Consensus 322 ~~~--~--~~~~sw~lkF~~~~~~~~F~~~~~~~l 352 (794)
T PF08553_consen 322 YTE--D--GSAYSWLLKFKDQEDYERFQEKFMKCL 352 (794)
T ss_pred EcC--C--CceEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 432 2 257899999999999999999999885
No 16
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=92.80 E-value=2.9 Score=36.78 Aligned_cols=97 Identities=21% Similarity=0.269 Sum_probs=72.0
Q ss_pred eeEEEEeeeEEEecc--CCccccceEEEEEEeecC-CCCceEEEEEeccceeEEeccccCCCCcccccCCcceEEEeecc
Q 013715 310 KVVFSADSVLFEFLD--GSWKERGKGELKVNVSTN-ATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINS 386 (437)
Q Consensus 310 evLFs~RAKLyrf~~--~eWKERGvG~LKLlk~ke-~t~k~RIVMRrDgtlKVlLN~~I~~~Mkvt~~~kKsV~ftavnd 386 (437)
.+|..+=+.||.-.. +.|.-...|.|=|-+... .+=-.||+=... .+++..+-|+.+|.++...+....|..
T Consensus 5 ~il~~aVvqlY~a~p~~~~W~~~~~Gvl~~vkD~~~~sy~lrl~D~~~--~~v~weqElY~~f~y~~~r~fFhtFe~--- 79 (105)
T cd01205 5 KILATAVVQLYKAYPDPGRWTKTLTGAVCLVKDNVQKSYFIRLFDIKA--NRIIWEQELYDNFEYQQPRPFFHTFEG--- 79 (105)
T ss_pred eEEEEEEEEEEEecCCCCeeEEEeEEEEEEEEECCCCEEEEEEEEccC--CcEEEEEEcccCcEEccCCCcEEEEec---
Confidence 356666788998854 899999999999998753 123345555443 889999999999999975433334432
Q ss_pred CCCCCccceEEEEEeCCHHHHHHHHHHHHHH
Q 013715 387 ATEGKSGLSTFALKFRDASIVEEFQTAVAAH 417 (437)
Q Consensus 387 ~sEgk~kl~tylLRFKtaE~AdeF~kaIeea 417 (437)
| -.++-|.|-+.+.|..|+++|++.
T Consensus 80 --d----~c~~GL~Fade~EA~~F~k~v~~~ 104 (105)
T cd01205 80 --D----DCVVGLNFADETEAAEFRKKVLDK 104 (105)
T ss_pred --c----CcEEEEEECCHHHHHHHHHHHHhc
Confidence 2 357888999999999999998763
No 17
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=89.63 E-value=0.61 Score=49.59 Aligned_cols=88 Identities=14% Similarity=0.259 Sum_probs=67.8
Q ss_pred CCccccce-----EEEEEEeecCCCCceEEEEEeccc-eeEEeccccCCCCcccccCCcceEEEeeccCCCCCccceEEE
Q 013715 325 GSWKERGK-----GELKVNVSTNATGRARLLMRARGN-YRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFA 398 (437)
Q Consensus 325 ~eWKERGv-----G~LKLlk~ke~t~k~RIVMRrDgt-lKVlLN~~I~~~Mkvt~~~kKsV~ftavnd~sEgk~kl~tyl 398 (437)
+.|.-.|. --|+|..|.. ..-+|||-|.-+- .-|+||..|.++++|......+-.|-. ..+.|-
T Consensus 8 k~W~p~g~g~~~~s~V~~~~h~~-~n~frVvg~k~qdd~~vVlnC~I~kGlkYnkatptFHqWR~---------arqvyG 77 (409)
T KOG4590|consen 8 KGWLPAGGGGAALSKVRIYHHTS-GNTFRVVGRKSQDDQQVVLNCLILKGLKYNKATPTFHQWRD---------ARQVYG 77 (409)
T ss_pred cccccccccCcccceeEEEeecc-CCceeEEeeecccCcccccccccccCcceeecccchhhhhh---------hhhhhc
Confidence 56776663 3466777765 7899999999887 889999999999999986544433331 146799
Q ss_pred EEeCCHHHHHHHHHHHHHHHHhhh
Q 013715 399 LKFRDASIVEEFQTAVAAHKDKTT 422 (437)
Q Consensus 399 LRFKtaE~AdeF~kaIeeaK~~~~ 422 (437)
|.|.+.++|..|...+-.+.+.+.
T Consensus 78 LnFqs~~DA~~Fa~~~~~A~e~l~ 101 (409)
T KOG4590|consen 78 LTFQSEQDARAFARGVPVAIEALS 101 (409)
T ss_pred ccccChhhhhhhhhhhhhhhhhhc
Confidence 999999999999988877776653
No 18
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=87.22 E-value=1 Score=49.03 Aligned_cols=89 Identities=20% Similarity=0.341 Sum_probs=60.8
Q ss_pred EEEecc--CCccccce-EEEEEEeecC-CCCceEEEEEeccceeEEeccccCCCCcccccCCcceEEEeeccCCCCCccc
Q 013715 319 LFEFLD--GSWKERGK-GELKVNVSTN-ATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGL 394 (437)
Q Consensus 319 Lyrf~~--~eWKERGv-G~LKLlk~ke-~t~k~RIVMRrDgtlKVlLN~~I~~~Mkvt~~~kKsV~ftavnd~sEgk~kl 394 (437)
||.-.- +.|.-+|. |.|-|-+... ..--.||+--.+ .|||.-+-||.+|.|..- + -.|.+|. ++ -
T Consensus 47 LY~a~p~~~~W~~~~~~Gal~lVkD~~~rsyFlrl~di~~--~rliWdqELY~nf~y~q~--r-~ffhtFe----gd--d 115 (569)
T KOG3671|consen 47 LYKAYPDPNHWNKTGLCGALCLVKDNAQRSYFLRLVDIVN--NRLIWDQELYQNFEYRQP--R-TFFHTFE----GD--D 115 (569)
T ss_pred HHhhcCChhhhccccCceeEEEeeccccceeeeEEeeecC--ceeeehHHhhhhceeccC--c-cceeeec----cc--c
Confidence 555433 58999999 9998887642 123345554444 459999999999999873 3 1223331 11 2
Q ss_pred eEEEEEeCCHHHHHHHHHHHHHHH
Q 013715 395 STFALKFRDASIVEEFQTAVAAHK 418 (437)
Q Consensus 395 ~tylLRFKtaE~AdeF~kaIeeaK 418 (437)
++.-|-|-+.++|++|+++|++..
T Consensus 116 c~aGLnF~~E~EA~~F~k~V~~r~ 139 (569)
T KOG3671|consen 116 CQAGLNFASEEEAQKFRKKVQDRI 139 (569)
T ss_pred ceeeecccCHHHHHHHHHHHHHHh
Confidence 366688999999999999998754
No 19
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=86.41 E-value=15 Score=32.77 Aligned_cols=96 Identities=16% Similarity=0.294 Sum_probs=64.6
Q ss_pred eeEEEE-eeeEEEec--cCCccccce-EEEEEEeecCCCCceEE-EEEeccceeEEeccccCCCCcccccCCcceEEEee
Q 013715 310 KVVFSA-DSVLFEFL--DGSWKERGK-GELKVNVSTNATGRARL-LMRARGNYRLILNASLYPDMKLTNMDKKGITFACI 384 (437)
Q Consensus 310 evLFs~-RAKLyrf~--~~eWKERGv-G~LKLlk~ke~t~k~RI-VMRrDgtlKVlLN~~I~~~Mkvt~~~kKsV~ftav 384 (437)
.+|..+ .|-||.|+ .++|...|+ |+|.|-+... .-+++| ||=|.+..-+++. |.+.|.++..+ ..+++-.
T Consensus 21 ~Il~~a~~v~vY~f~~~~~~W~K~~iEG~LFv~~r~~-~p~~~~~vlNR~~~~n~~~~--i~~~~~~e~~~-~~l~~r~- 95 (122)
T PF06058_consen 21 SILDTASHVVVYKFDHETNEWEKTDIEGTLFVYKRSS-SPRYGLIVLNRRSTENFVEP--ITPDLDFELQD-PYLIYRN- 95 (122)
T ss_dssp EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEET-TS-ECEEEEESSSS--EEEE--E-SGGGEEEET-TEEEEEE-
T ss_pred HHHhhCCeEEEEeecCCCCcEeecCcEeeEEEEEeec-ccceEEEEecCCCCCceeee--cCCCcEEEEeC-CEEEEEc-
Confidence 344444 68999997 589999987 9999987654 445554 4444444445554 78888888653 4555551
Q ss_pred ccCCCCCccceEEEEEeCCHHHHHHHHHHHHHH
Q 013715 385 NSATEGKSGLSTFALKFRDASIVEEFQTAVAAH 417 (437)
Q Consensus 385 nd~sEgk~kl~tylLRFKtaE~AdeF~kaIeea 417 (437)
+ .-..|-|=|-+.+++++..+.|+..
T Consensus 96 -~------~~~I~GiWf~~~~d~~ri~~~l~~l 121 (122)
T PF06058_consen 96 -D------NQEIYGIWFYDDEDRQRIYNLLQRL 121 (122)
T ss_dssp -T------TTEEEEEEESSHHHHHHHHHHHHHH
T ss_pred -C------CceEEEEEEEeHHHHHHHHHHHHhc
Confidence 1 1367999999999999999988764
No 20
>PF11531 CARM1: Coactivator-associated arginine methyltransferase 1 N terminal; InterPro: IPR020989 Histone-arginine methyltransferase CARM1 (also known as coactivator-associated arginine methyltransferase 1) methylates arginine residues in several proteins involved in DNA packaging, transcription regulation, and mRNA stability []. CARM1 is recruited by several transcription factors and plays a critical role in gene expression as a positive regulator. This entry represents the N-terminal domain of CARM1. Structurally this domain adopts a PH domain-like fold, a common structural scaffold found in a broad range proteins with diverse activities, which is frequently found to regulate protein-protein interactions []. ; GO: 0009405 pathogenesis; PDB: 2OQB_B 2Y1W_C 2Y1X_D.
Probab=62.45 E-value=33 Score=30.92 Aligned_cols=57 Identities=7% Similarity=0.198 Sum_probs=42.5
Q ss_pred ceeEEeccccCCCCcccccCCcceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHHHHhh
Q 013715 356 NYRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKT 421 (437)
Q Consensus 356 tlKVlLN~~I~~~Mkvt~~~kKsV~ftavnd~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK~~~ 421 (437)
..-.++-..|.++..+-++++.+++++.- ..+.||+|.+..+-..|+..|+.++..+
T Consensus 50 ~~~cvfkc~VsreTEccRVG~~SfliTlg---------~nSlLl~F~s~~df~~F~n~lk~cr~~~ 106 (114)
T PF11531_consen 50 ECVCVFKCTVSRETECCRVGKQSFLITLG---------CNSLLLQFASPADFSSFHNILKRCRNQK 106 (114)
T ss_dssp T--EEEEEEEETTSEEEEETTTEEEEEET---------TEEEEEE-SSHHHHHHHHHHHCCCTT--
T ss_pred CCEEEEEEEEcCCcceeEecceEEEEEec---------CCeEEEEecCHHHHHHHHHHHHHHhCCC
Confidence 34466777788888888888888887751 3589999999999999999988777554
No 21
>PF07933 DUF1681: Protein of unknown function (DUF1681); InterPro: IPR012466 NECAP 1 localises to clathrin-coated pits and direct binding to the globular ear domain of the alpha-adaptin subunit (alpha-ear) of the adaptor protein 2 (AP-2) complex. This interaction is mediated by a specific motif, WVQF, that uses a distinct alpha-ear interface relative to known alpha-ear-binding partners. Disruption of this interaction blocks clathrin-mediated endocytosis [].; GO: 0006897 endocytosis, 0016020 membrane; PDB: 1TQZ_A.
Probab=55.75 E-value=59 Score=30.82 Aligned_cols=108 Identities=13% Similarity=0.227 Sum_probs=57.6
Q ss_pred ceeEEEEe-eeEEEecc---------CCcc---ccceEEEEEEeecCCCCceEEEEEeccceeEEeccccCCCCccccc-
Q 013715 309 EKVVFSAD-SVLFEFLD---------GSWK---ERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNM- 374 (437)
Q Consensus 309 EevLFs~R-AKLyrf~~---------~eWK---ERGvG~LKLlk~ke~t~k~RIVMRrDgtlKVlLN~~I~~~Mkvt~~- 374 (437)
|.+||.++ |-+|+.-. ..|. ..=.|-|||....+ ..+++|++-...++.|.+.+++.....|.+.
T Consensus 3 e~vL~~~~ev~VY~IPP~~s~~GyrAadW~~~~~iwtGrlrV~~~g~-~~~v~i~leD~~tgeLFA~~P~~~~~~VE~v~ 81 (160)
T PF07933_consen 3 ERVLFVIPEVHVYKIPPRTSNKGYRAADWTLDKPIWTGRLRVVEKGD-KCKVDIRLEDPSTGELFAQCPYDDYAAVEPVI 81 (160)
T ss_dssp S---B--SSEEEEE--S--SSSS--HHHH--SSS-EEEEEEEE--SS-SE--EEEEE-SS--SS-EEEEE-SS--EEE-T
T ss_pred eEEEEEcCcEEEEECCCCCCCCCeecccCCCCCceeeeEEEEEEcCC-eeEEEEEecCCCCcceEEECcccCCCceEEee
Confidence 45677754 77887742 3564 33578899997643 3344777777788999999999988666664
Q ss_pred -CCcceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHHHHhh
Q 013715 375 -DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKT 421 (437)
Q Consensus 375 -~kKsV~ftavnd~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK~~~ 421 (437)
+.+...+-+.+. .+.-..+=|=|..-.+|=+|.-+|++|....
T Consensus 82 DSSRYFvlRv~d~----~Gr~AfiGiGF~eRsdAFDF~vaLqd~~k~~ 125 (160)
T PF07933_consen 82 DSSRYFVLRVQDP----SGRHAFIGIGFRERSDAFDFNVALQDHRKYL 125 (160)
T ss_dssp T--S-EEEEEEET----TTEEEEEEEE-S-HHHHHHHHHHHHHHHS-S
T ss_pred cccceEEEEEEcC----CCcEEEEEEeeccccccccHHHHHHHHHHHh
Confidence 345555555442 2334556688988899999999999999654
No 22
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=54.07 E-value=91 Score=35.10 Aligned_cols=101 Identities=15% Similarity=0.215 Sum_probs=71.8
Q ss_pred eeEEEEeeeEEEecc--CCccccceEEEEEEeecCCCCceEEEEEeccceeEEeccccCCCCcccccC-CcceEEEeecc
Q 013715 310 KVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMD-KKGITFACINS 386 (437)
Q Consensus 310 evLFs~RAKLyrf~~--~eWKERGvG~LKLlk~ke~t~k~RIVMRrDgtlKVlLN~~I~~~Mkvt~~~-kKsV~ftavnd 386 (437)
+.+|..-+-||+|+. ..+-. ---.+++-.- +.|++-+.+|-.+--+++|-..|.++|.+.-.- .-.++|..+.+
T Consensus 229 e~~~~~~~~l~~yd~~~e~Fil-q~p~Vkv~i~--d~G~~~fw~~Iet~d~~~l~~~V~~~~np~f~~~~~tFvwny~~~ 305 (776)
T COG5167 229 ETLYSKNGVLSRYDTATERFIL-QKPHVKVVIV--DDGKEVFWIRIETRDDVILFEEVRTETNPYFDQKNTTFVWNYMED 305 (776)
T ss_pred ceeeeecceEEeecchhheeee-cCCceEEEEE--ecCCeEEEEEEecccceeehheeccccCcceecccceeeeeeecc
Confidence 578999999999975 22111 0112233322 378999999999888899999999999887532 33456665532
Q ss_pred CCCCCccceEEEEEeCCHHHHHHHHHHHHHHH
Q 013715 387 ATEGKSGLSTFALKFRDASIVEEFQTAVAAHK 418 (437)
Q Consensus 387 ~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK 418 (437)
....+|+|||.+-....+|..++-.|.
T Consensus 306 -----n~~~s~~LrF~d~~~~~qF~~~~i~cL 332 (776)
T COG5167 306 -----NVFHSFSLRFLDNLDFLQFLSKYIGCL 332 (776)
T ss_pred -----cchheeeeeecchhHHHHHHHHHHHHH
Confidence 246799999999999999998887775
No 23
>KOG0866 consensus Ran-binding protein RANBP3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.63 E-value=5.2 Score=41.52 Aligned_cols=71 Identities=17% Similarity=0.098 Sum_probs=57.3
Q ss_pred ceeEEEEeeeEEEecc--CCccccceEEEEEEeecCCCCceEEEEEeccceeEEeccccCCCCcccccCCcceEEEee
Q 013715 309 EKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACI 384 (437)
Q Consensus 309 EevLFs~RAKLyrf~~--~eWKERGvG~LKLlk~ke~t~k~RIVMRrDgtlKVlLN~~I~~~Mkvt~~~kKsV~ftav 384 (437)
+.-+|-.+++.|+++. +.+-.||++.|+++..++ ..+.|++.|-.+...|++| -+..+...+...|...+.
T Consensus 242 ~v~vFl~~~~~~rtd~i~~s~~~~~i~~~~~~~~r~-~~kak~~~~~e~s~~~l~~----~d~d~d~~~~~~v~v~a~ 314 (327)
T KOG0866|consen 242 GVKVFLISASSKRTDQIYKSLSHRSIAALKSRVERE-CLKAKMPAPEEGSAPLLKE----DDSDDDLVGAPSVAVAAG 314 (327)
T ss_pred cceEEEeeccccchhhhhhhhhhhhhhhhhcccchh-hhhcccCCCcccccccccc----ccchhhhcCCcceeeecc
Confidence 6789999999999974 899999999999999875 6799999999999999998 333344445556655543
No 24
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=32.54 E-value=54 Score=28.95 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=20.4
Q ss_pred cceEEEEEeCCHHHHHHHHHHHHHH
Q 013715 393 GLSTFALKFRDASIVEEFQTAVAAH 417 (437)
Q Consensus 393 kl~tylLRFKtaE~AdeF~kaIeea 417 (437)
..-..||||++...|++|+..++-.
T Consensus 53 nrymVLikF~~~~~Ad~Fy~~fNGk 77 (110)
T PF07576_consen 53 NRYMVLIKFRDQESADEFYEEFNGK 77 (110)
T ss_pred ceEEEEEEECCHHHHHHHHHHhCCC
Confidence 3456788999999999999988643
No 25
>PHA02095 hypothetical protein
Probab=25.51 E-value=2e+02 Score=24.35 Aligned_cols=73 Identities=10% Similarity=0.204 Sum_probs=45.3
Q ss_pred EEEEEecccee-EEeccccCCCCccccc--CCcceEEEeeccC----CCCCccc--eEEEEEeCCHHHHHHHHHHHHHHH
Q 013715 348 RLLMRARGNYR-LILNASLYPDMKLTNM--DKKGITFACINSA----TEGKSGL--STFALKFRDASIVEEFQTAVAAHK 418 (437)
Q Consensus 348 RIVMRrDgtlK-VlLN~~I~~~Mkvt~~--~kKsV~ftavnd~----sEgk~kl--~tylLRFKtaE~AdeF~kaIeeaK 418 (437)
|++..+.|..+ |+|||.-+-+-+++.. -+.+|.|+-++-. +|.+.-+ -+.+|-+.++ .++++-..|+=++
T Consensus 1 ~~~~f~~g~~~p~ll~~~s~~~g~iq~~yv~ng~wefsrvdgilciegd~~~pm~~f~~ii~vp~~-~~~dyn~ii~wa~ 79 (84)
T PHA02095 1 RIAAFRKGGTNPVLLNFFSMTEGVIQNGYVENGSWEFSRVDGILCIEGDKEHPMPDFEHIVEVPDE-MAGDYNEIISWAE 79 (84)
T ss_pred CeeEeccCCCCceEEEEEEeecceeeeeEEecCcEEEEeccEEEEecCCCCCCchhheeeeeCchh-hcccHHHHHHHHH
Confidence 44555555444 9999999998888853 2446776644321 2211112 2567777655 8888888888776
Q ss_pred Hhh
Q 013715 419 DKT 421 (437)
Q Consensus 419 ~~~ 421 (437)
.+.
T Consensus 80 ~~~ 82 (84)
T PHA02095 80 KQL 82 (84)
T ss_pred hhh
Confidence 553
No 26
>PF15411 PH_10: Pleckstrin homology domain
Probab=23.36 E-value=1.5e+02 Score=26.29 Aligned_cols=22 Identities=32% Similarity=0.732 Sum_probs=18.0
Q ss_pred cceEEEEEeCCHHHHHHHHHHH
Q 013715 393 GLSTFALKFRDASIVEEFQTAV 414 (437)
Q Consensus 393 kl~tylLRFKtaE~AdeF~kaI 414 (437)
.+..|.|||++.+..+....+|
T Consensus 95 e~~~F~lrf~nee~l~~W~~~L 116 (116)
T PF15411_consen 95 ELENFTLRFRNEEQLEQWRSAL 116 (116)
T ss_pred CCceEEEEeCCHHHHHHHHhhC
Confidence 4789999999999888776653
No 27
>KOG0864 consensus Ran-binding protein RANBP1 and related RanBD domain proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.58 E-value=16 Score=35.58 Aligned_cols=117 Identities=27% Similarity=0.301 Sum_probs=64.8
Q ss_pred CCCCcccccccCccccccccccCCCccccceeecCCCCCCCCCCCCC--CccccccCCCCCccCCCCCCCcccCCCCCCC
Q 013715 217 DSSQLSSFGQLSSTQNAFTGLAGTGFSTSTFAFGSIPKDGSASNSTS--ASVFGQVNNGNSSLFNTPATSIASKSEGTTF 294 (437)
Q Consensus 217 ~~~~~fSF~~~ss~~naFtg~agtg~SsssFsFG~~~~~~~~~s~~s--~~~FG~~s~gss~~FG~~~~s~~~~sE~p~i 294 (437)
..+..-++.+.+++. .++....++.++|.|+.+........-.. -..++........+|.+... +-+..|
T Consensus 92 ~~g~~r~~m~rdst~---~~v~sn~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~~e-----~s~~~f 163 (215)
T KOG0864|consen 92 DTGSTRDLMRRDSTK---LKVCSNHFIGPSFKLEPPAWEEDSGKWNSLADFSETQPKAEKLAIRFAKVE-----SSGKAF 163 (215)
T ss_pred CCCcceeeeeecccc---hhhcccccccCcccccCCcccCcchhhhhhhhhcccccchhHHHHHhhhhc-----ccchhh
Confidence 344456777777773 36777777889999997766554211111 12222222222222221111 001233
Q ss_pred CCCcccccccCcccce-eEEEEeeeEEEeccCCccccceEEEEEEeec
Q 013715 295 PSMQEVVVETGEENEK-VVFSADSVLFEFLDGSWKERGKGELKVNVST 341 (437)
Q Consensus 295 p~l~eVev~TGEEnEe-vLFs~RAKLyrf~~~eWKERGvG~LKLlk~k 341 (437)
+..-+.....++++|. .-+...++-+.|..+.|++||.|.+++++..
T Consensus 164 ~~~~e~~~~~~~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (215)
T KOG0864|consen 164 KEKIEEAKEGIEENEKNQESSKNAHNLEYLKGGWKERGKGEPKSNRSA 211 (215)
T ss_pred HhhhhhhhhhhhhhhhhhccccccccchhhhhhHHhhccccccccccc
Confidence 3222333345566665 5556666777778899999999999986653
Done!