Query 013715
Match_columns 437
No_of_seqs 166 out of 637
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 15:45:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013715.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013715hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hat_B RAN-specific GTPase-act 100.0 2.3E-38 8E-43 282.6 14.8 127 296-423 9-139 (140)
2 1xke_A RAN-binding protein 2; 100.0 8.8E-38 3E-42 274.7 15.8 125 303-429 1-130 (130)
3 3m1i_B RAN-specific GTPase-act 100.0 4.7E-37 1.6E-41 286.7 15.4 128 295-423 59-190 (191)
4 1rrp_B Nuclear pore complex pr 100.0 2.4E-36 8.1E-41 266.6 16.0 126 292-419 4-133 (134)
5 1k5d_B RAN-specific GTPase-act 100.0 3.5E-36 1.2E-40 282.8 15.5 131 296-427 32-168 (201)
6 2crf_A RAN binding protein 3; 100.0 2.9E-34 1E-38 258.4 16.3 134 292-428 9-147 (150)
7 2ec1_A Nucleoporin 50 kDa; ran 100.0 1.1E-34 3.7E-39 254.1 12.6 117 301-419 4-124 (125)
8 3n7c_A ABR034WP; nuclear pore 100.0 1.1E-34 3.7E-39 255.8 10.7 118 300-422 1-123 (130)
9 2y8g_A Ranbp3-B, RAN-binding p 100.0 1.2E-34 4.1E-39 257.6 10.4 123 297-422 2-129 (138)
10 1qc6_A EVH1 domain from ENA/VA 99.5 2.9E-13 9.8E-18 118.8 12.4 105 308-422 2-113 (130)
11 2c1m_B Nucleoporin 50 kDa; pro 99.5 1.1E-14 3.7E-19 108.0 2.6 44 13-60 3-46 (46)
12 1un0_C Nucleoporin NUP2; nucle 99.4 5.1E-14 1.7E-18 106.4 2.3 47 13-62 3-49 (51)
13 3tj3_C Nuclear pore complex pr 99.3 3.4E-13 1.2E-17 116.3 2.4 60 12-75 7-67 (114)
14 1ddw_A GLGF-domain protein hom 99.1 7.6E-10 2.6E-14 96.5 13.9 105 308-422 2-111 (120)
15 1i2h_A PSD-ZIP45(homer-1C/VESL 99.0 2E-09 6.9E-14 98.9 12.7 105 308-422 7-116 (168)
16 1egx_A VAsp, vasodilator-stimu 98.8 4.8E-08 1.6E-12 84.4 12.0 103 309-421 3-113 (115)
17 1evh_A WH1 domain, protein (ME 98.8 7.1E-08 2.4E-12 82.9 12.4 103 308-420 2-110 (112)
18 1xod_A Spred1; sprouty, EVH1, 98.5 4.2E-07 1.4E-11 78.8 10.6 105 308-421 2-115 (118)
19 2jp2_A Spred-2, sprouty-relate 98.5 1E-06 3.5E-11 77.4 11.8 106 307-421 10-124 (126)
20 3syx_A Sprouty-related, EVH1 d 97.9 0.00022 7.6E-09 63.1 12.9 105 310-423 11-124 (130)
21 1mke_A WIP - N-WAsp, fusion pr 96.8 0.019 6.5E-07 51.9 13.1 100 310-421 41-143 (152)
22 2ifs_A N-WAsp, wiskott-aldrich 96.6 0.014 4.9E-07 53.5 10.8 100 310-421 58-160 (169)
23 2oqb_A Histone-arginine methyl 91.6 0.95 3.2E-05 39.4 9.0 55 357-420 54-108 (117)
24 2lyd_A Decapping protein 1; DC 84.3 20 0.00069 31.4 12.9 98 310-419 30-132 (134)
25 2qkl_A DCP1 protein, SPBC3B9.2 79.4 26 0.0009 30.4 11.7 96 310-418 25-125 (127)
26 1o6o_D Nucleoporin NSP1; nucle 69.4 4.6 0.00016 35.2 4.2 48 217-270 34-82 (119)
27 1tqz_A Necap1; endocytosis, st 56.7 30 0.001 30.6 7.1 108 306-420 5-129 (133)
28 1o6o_D Nucleoporin NSP1; nucle 50.8 15 0.00053 31.9 4.2 12 218-229 54-65 (119)
29 1pfj_A TFIIH basal transcripti 26.5 3E+02 0.01 23.4 8.6 93 308-421 5-103 (108)
No 1
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B*
Probab=100.00 E-value=2.3e-38 Score=282.58 Aligned_cols=127 Identities=27% Similarity=0.502 Sum_probs=109.4
Q ss_pred CCcccccccCcccceeEEEEeeeEEEec--cCCccccceEEEEEEeecCCCCceEEEEEeccceeEEeccccCCCCcccc
Q 013715 296 SMQEVVVETGEENEKVVFSADSVLFEFL--DGSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTN 373 (437)
Q Consensus 296 ~l~eVev~TGEEnEevLFs~RAKLyrf~--~~eWKERGvG~LKLlk~ke~t~k~RIVMRrDgtlKVlLN~~I~~~Mkvt~ 373 (437)
.|++|++.||||+|++||++|||||+|+ +++|+|||+|+||||+|++ ++++|||||+|+++||||||+|+++|+|++
T Consensus 9 ~l~~vev~tGEE~E~~lf~~raKLf~f~~~~~~WkerG~G~lkilk~k~-~~k~RllmR~d~~~kv~lN~~i~~~m~~~~ 87 (140)
T 4hat_B 9 HLEKVDVKTMEEDEEVLYKVRAKLFRFDKDAKEWKERGTGDCKFLKNKK-TNKVRILMRRDKTLKICANHIIAPEYTLKP 87 (140)
T ss_dssp ----------CTTEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETT-TCCEEEEEECTTTCCEEEEEECCTTCCCBC
T ss_pred EcceecccCCCcCeeEEEEEeEEEEEEcCCCCCcccccEEEEEEEEcCC-CCeEEEEEEecCcceEEEEeEecCCeEEeE
Confidence 5699999999999999999999999998 4789999999999999996 899999999999999999999999999998
Q ss_pred c--CCcceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHHHHhhhc
Q 013715 374 M--DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKTTA 423 (437)
Q Consensus 374 ~--~kKsV~ftavnd~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK~~~~~ 423 (437)
+ ++++|+|+|..+++|+++++++|+|||++++.|++|+++|+++|..|+.
T Consensus 88 ~~~s~k~~v~~~~~D~sdg~~~~~~~~iRfk~~e~A~~f~~~~ee~~~~n~~ 139 (140)
T 4hat_B 88 NVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFEKAQEINKK 139 (140)
T ss_dssp CTTCSSEEEEEEEEECTTSSCEEEEEEEEESSHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCCceEEEEccccCCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHhcc
Confidence 7 3678999987777888788999999999999999999999999998863
No 2
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=100.00 E-value=8.8e-38 Score=274.73 Aligned_cols=125 Identities=30% Similarity=0.515 Sum_probs=115.3
Q ss_pred ccCcccceeEEEEeeeEEEecc--CCccccceEEEEEEeecCCCCceEEEEEeccceeEEeccccCCCCccccc--CCcc
Q 013715 303 ETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNM--DKKG 378 (437)
Q Consensus 303 ~TGEEnEevLFs~RAKLyrf~~--~eWKERGvG~LKLlk~ke~t~k~RIVMRrDgtlKVlLN~~I~~~Mkvt~~--~kKs 378 (437)
.||||+|++||++|||||+|++ ++|+|||+|+||||+|+. ++++|||||+|+++||||||+|+++|+|+++ +.++
T Consensus 1 gtGEE~E~~l~~~raKL~~~~~~~~~WkERG~G~lkil~~k~-~~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~s~~~ 79 (130)
T 1xke_A 1 GSGEEDEKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEV-NGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRA 79 (130)
T ss_dssp CCSSSCEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETT-SSCEEEEEEETTTTEEEEEEECCTTSCEEECTTCSSC
T ss_pred CCCCcceEEEEEEEEEEEEEcCCCCCcccCcEEEEEEEEcCC-CCeEEEEEEEcCCCeEEEecEeCCCcEEeecCCCCeE
Confidence 3899999999999999999975 789999999999999986 8999999999999999999999999999986 3678
Q ss_pred eEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHHHHhh-hcccCCCC
Q 013715 379 ITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKT-TAVLKTPE 429 (437)
Q Consensus 379 V~ftavnd~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK~~~-~~~lkt~e 429 (437)
|+|++.+ +.|++.++++|+|||+++++|++|+++|++++..+ ..+|+|||
T Consensus 80 ~~~~~~d-~~d~~~~~~~~~irfks~e~a~~f~~~~ee~k~~~~~~~~~~p~ 130 (130)
T 1xke_A 80 WMWLASD-FSDGDAKLEQLAAKFKTPELAEEFKQKFEECQRLLLDIPLQTPK 130 (130)
T ss_dssp EEEEEEE-CSSSCSEEEEEEEECSSHHHHHHHHHHHHHHHHHTTTSCCCCCC
T ss_pred EEEEecc-cCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHhhccCCCCCC
Confidence 9999854 56666789999999999999999999999999977 58999997
No 3
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-37 Score=286.66 Aligned_cols=128 Identities=27% Similarity=0.494 Sum_probs=118.0
Q ss_pred CCCcccccccCcccceeEEEEeeeEEEecc--CCccccceEEEEEEeecCCCCceEEEEEeccceeEEeccccCCCCccc
Q 013715 295 PSMQEVVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLT 372 (437)
Q Consensus 295 p~l~eVev~TGEEnEevLFs~RAKLyrf~~--~eWKERGvG~LKLlk~ke~t~k~RIVMRrDgtlKVlLN~~I~~~Mkvt 372 (437)
..|++|+|.||||+|++||++|||||+|+. ++|++||+|+||||+|+. ++++|||||+++++||||||+|+++|+|+
T Consensus 59 v~L~~vev~tGEEdEe~lf~~RaKLf~f~~~~~~WKERGvG~lkilk~ke-t~k~RllMR~d~~~kV~LN~~I~~~m~~~ 137 (191)
T 3m1i_B 59 VHLEKVDVKTMEEDEEVLYKVRAKLFRFDADAKEWKERGTGDCKFLKNKK-TNKVRILMRRDKTLKICANHIIAPEYTLK 137 (191)
T ss_dssp --CCCCCCCCSCTTEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETT-TCCEEEEEECTTTCCEEEEEECCTTCCCB
T ss_pred eecccccccCCCcceeeeeEEeeEEEEEecCCCCccceeEEEEEEEEcCC-CCeEEEEEEecCcceEEEeeecCCCcEEe
Confidence 357999999999999999999999999984 789999999999999996 89999999999999999999999999999
Q ss_pred cc--CCcceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHHHHhhhc
Q 013715 373 NM--DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKTTA 423 (437)
Q Consensus 373 ~~--~kKsV~ftavnd~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK~~~~~ 423 (437)
++ ++++|+|+|..+++|+.+++++|+|||+++++|++|+++|++++..|+.
T Consensus 138 ~~~~sdks~v~~~~~D~sdge~k~e~~aIRFk~~E~A~eF~~~~eeaq~~nkk 190 (191)
T 3m1i_B 138 PNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFEKAQEINKK 190 (191)
T ss_dssp CCTTCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHHHHHHHT
T ss_pred ECCCCCceEEEEecCcCCCCCcceEEEEEEECCHHHHHHHHHHHHHHHHHhhc
Confidence 87 4688999997677788778999999999999999999999999998863
No 4
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=100.00 E-value=2.4e-36 Score=266.64 Aligned_cols=126 Identities=27% Similarity=0.483 Sum_probs=114.5
Q ss_pred CCCCCCcccccccCcccceeEEEEeeeEEEec--cCCccccceEEEEEEeecCCCCceEEEEEeccceeEEeccccCCCC
Q 013715 292 TTFPSMQEVVVETGEENEKVVFSADSVLFEFL--DGSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDM 369 (437)
Q Consensus 292 p~ip~l~eVev~TGEEnEevLFs~RAKLyrf~--~~eWKERGvG~LKLlk~ke~t~k~RIVMRrDgtlKVlLN~~I~~~M 369 (437)
|.++.+++|++.||||+|++||++|||||+|+ +++|+|||+|+||||+|+. ++++|||||+++++||||||+|+++|
T Consensus 4 pi~~l~~~vev~tGEE~E~~lf~~raKL~~~~~~~~~WkerG~G~lkil~~k~-~~k~RlvmR~d~~~kv~lN~~i~~~m 82 (134)
T 1rrp_B 4 PVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKT-SGKIRLLMRREQVLKICANHYISPDM 82 (134)
T ss_dssp CSSCCCCCCCCCCSCCSEEEEEEEEEEEEEECSSSSCEEEEEEEEEEEEEESS-SCCCEEEEECTTTCCEEECCBCCSSC
T ss_pred cceECCceEeecCCCcCeEEEEEEEEEEEEEcccCCCcccCcEEEEEEEEECC-CCeEEEEEEEcCCCcEEEEeEecCCc
Confidence 56665668999999999999999999999997 4899999999999999986 89999999999999999999999999
Q ss_pred cccccC--CcceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHHHH
Q 013715 370 KLTNMD--KKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKD 419 (437)
Q Consensus 370 kvt~~~--kKsV~ftavnd~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK~ 419 (437)
+|+++. .++|+|++++. .++.+++++|+|||++++.|++|+++|++++.
T Consensus 83 ~~~~~~~s~~~~~~~~~d~-~d~~~k~~~~~irfk~~e~A~~f~~~~~e~~~ 133 (134)
T 1rrp_B 83 KLTPNAGSDRSFVWHALDY-ADELPKPEQLAIRFKTPEEAALFKCKFEEAQS 133 (134)
T ss_dssp CCBCSTTCTTEEEEEEEEC-TTSSCEEEEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred eEeecCCCCeEEEEEcccc-cCCCCceEEEEEEECCHHHHHHHHHHHHHHhh
Confidence 999863 67899999864 45557899999999999999999999999874
No 5
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B*
Probab=100.00 E-value=3.5e-36 Score=282.77 Aligned_cols=131 Identities=25% Similarity=0.387 Sum_probs=119.2
Q ss_pred CCcccccccCcccceeEEEEeeeEEEe--c--cCCccccceEEEEEEeecCCCCceEEEEEeccceeEEeccccCCCCcc
Q 013715 296 SMQEVVVETGEENEKVVFSADSVLFEF--L--DGSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKL 371 (437)
Q Consensus 296 ~l~eVev~TGEEnEevLFs~RAKLyrf--~--~~eWKERGvG~LKLlk~ke~t~k~RIVMRrDgtlKVlLN~~I~~~Mkv 371 (437)
.|++|+|.||||+|++||++|||||+| + .++|++||+|+||||+|+. ++++|||||+++++||||||+|+++|+|
T Consensus 32 ~L~~vev~TGEEdEe~lf~~RaKLf~f~~d~~~~~WKERGvG~lkIlk~k~-t~k~RlvMR~d~~~kV~LN~~I~~~m~~ 110 (201)
T 1k5d_B 32 SLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKE-KGAIRLLMRRDKTLKICANHYITPMMEL 110 (201)
T ss_dssp CCCCCCCCCSCSSCCCSEEEEEEEEEECCTTSSCCEEEEEEEEEEEEECSS-SCCEEEEEEETTTCCEEEEEECCSSCCC
T ss_pred ccccccccCCCccceEEEEEeeeEEEecccccCCCccccceEEEEEEEcCC-CCcEEEEEEECCcceEEEeeEecCCcee
Confidence 688999999999999999999999999 3 4899999999999999986 8999999999999999999999999999
Q ss_pred ccc--CCcceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHHHHhhhcccCC
Q 013715 372 TNM--DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKTTAVLKT 427 (437)
Q Consensus 372 t~~--~kKsV~ftavnd~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK~~~~~~lkt 427 (437)
+++ ..++|+|+++.++.++..++++|+|||+++++|++|+.+|++++..+....+.
T Consensus 111 ~~~~~s~ks~v~~~~~d~ad~~~k~e~~~iRfks~e~A~~f~~~~ee~k~~~~~~~~~ 168 (201)
T 1k5d_B 111 KPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEEREKK 168 (201)
T ss_dssp CBCSSCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred eecCCCCceEEEEeccccCCCCCceEEEEEEECCHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 986 36789998866677777789999999999999999999999999988765554
No 6
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=100.00 E-value=2.9e-34 Score=258.39 Aligned_cols=134 Identities=28% Similarity=0.448 Sum_probs=116.1
Q ss_pred CCCCCCcccccccCcccceeEEEEeeeEEEecc--CCccccceEEEEEEeecC---CCCceEEEEEeccceeEEeccccC
Q 013715 292 TTFPSMQEVVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTN---ATGRARLLMRARGNYRLILNASLY 366 (437)
Q Consensus 292 p~ip~l~eVev~TGEEnEevLFs~RAKLyrf~~--~eWKERGvG~LKLlk~ke---~t~k~RIVMRrDgtlKVlLN~~I~ 366 (437)
+.+|.|++|+|.||||+|++||++|||||+|++ ++|+|||+|+||||+|+. +++++|||||+++++||||||+|+
T Consensus 9 ~~~~~l~~vev~tGEE~E~~l~~~raKL~~fd~~~~~WkERG~G~lkil~~k~~~~~t~k~RlvmR~d~~~kv~lN~~i~ 88 (150)
T 2crf_A 9 ARKCLLEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLW 88 (150)
T ss_dssp SCCSCSSCTTTSCCCCCCEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEECSSSCSEEEEEEEEESSSCCEEEEEECC
T ss_pred ccccCcccccccCCCcCeEEEEEEEeEEEEEcCCCCCcccceeEEEEEEeccccCCCCccEEEEEEEcCcceEEeeeecc
Confidence 467789999999999999999999999999974 789999999999999972 368999999999999999999999
Q ss_pred CCCcccccCCcceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHHHHhhhcccCCC
Q 013715 367 PDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKTTAVLKTP 428 (437)
Q Consensus 367 ~~Mkvt~~~kKsV~ftavnd~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK~~~~~~lkt~ 428 (437)
++|+|+++++++|+|+|++. .++ .+++|+|||+++++|+.|...++++...+...-+.|
T Consensus 89 ~~m~~~~~~~k~~~~~~~d~-~d~--~~~~~lirfk~~e~a~lf~~~~e~i~~l~~~~~~~~ 147 (150)
T 2crf_A 89 AQMQIDKASEKSIHITAMDT-EDQ--GVKVFLISASSKDTGQLYAALHHRILALRSRVESGP 147 (150)
T ss_dssp TTCCEECCSSSEEEEEEEBS-SSC--CEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCceeecCCCCEEEEEeecC-CCC--ceEEEEEEECCHHHHHHHHHHHHHHHHHHhhhhcCc
Confidence 99999988899999999864 443 488999999999999988877777665555443333
No 7
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=254.10 Aligned_cols=117 Identities=23% Similarity=0.392 Sum_probs=101.0
Q ss_pred ccccCcccceeEEEEeeeEEEeccCCccccceEEEEEEeecCCCCceEEEEEeccc-eeEEeccccCCCCcccccCCcce
Q 013715 301 VVETGEENEKVVFSADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLLMRARGN-YRLILNASLYPDMKLTNMDKKGI 379 (437)
Q Consensus 301 ev~TGEEnEevLFs~RAKLyrf~~~eWKERGvG~LKLlk~ke~t~k~RIVMRrDgt-lKVlLN~~I~~~Mkvt~~~kKsV 379 (437)
+..||||+|++||++|||||+|.+++|+|||+|+||||+|+ ++++|||||+|++ +||||||+|+++|+|++++++.+
T Consensus 4 ~~~tgEE~E~~lf~~raKLf~~~~~~WkERGvG~lki~~~k--~~k~RllmR~d~~~~kv~lN~~i~~~m~~~~~g~~~~ 81 (125)
T 2ec1_A 4 GSSGEVKEEDAFYSKKCKLFYKKDNEFKEKGIGTLHLKPTA--NQKTQLLVRADTNLGNILLNVLIPPNMPCTRTGKNNV 81 (125)
T ss_dssp ----CCCCCSCSEEEEEEEEEECSSSEEEEEEEEEEEEECS--SSSEEEEEEESSSSCCBSCCEECCSSCCEECCTTTEE
T ss_pred CCcCCccCceeEEEEeeEEEEecCCCcccccEEEEEeeecC--CCcEEEEEEecCCCCEEEEeeEEcCCCeEEecCCCcE
Confidence 35699999999999999999999999999999999999986 6899999999996 79999999999999999876666
Q ss_pred EEEeecc-CCCCC--ccceEEEEEeCCHHHHHHHHHHHHHHHH
Q 013715 380 TFACINS-ATEGK--SGLSTFALKFRDASIVEEFQTAVAAHKD 419 (437)
Q Consensus 380 ~ftavnd-~sEgk--~kl~tylLRFKtaE~AdeF~kaIeeaK~ 419 (437)
++.|++. +.|++ .++++|+|||+++++|++|+++|+++|.
T Consensus 82 ~~~~~~~~~~d~~~~~~~~~~~lrfk~~e~a~~f~~~~~e~k~ 124 (125)
T 2ec1_A 82 LIVCVPNPPIDEKNATMPVTMLIRVKTSEDADELHKILLEKKD 124 (125)
T ss_dssp EEEECCSSCSCSSSSSSCEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEEEccCCcccCCCCCceEEEEEEECCHHHHHHHHHHHHHhhc
Confidence 5556543 23554 4699999999999999999999999985
No 8
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A
Probab=100.00 E-value=1.1e-34 Score=255.85 Aligned_cols=118 Identities=30% Similarity=0.467 Sum_probs=94.4
Q ss_pred cccccCcccceeEEEEeeeEEEecc--CCccccceEEEEEEeecCCCCceEEEEEeccceeEEeccccCCCCcccccC--
Q 013715 300 VVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMD-- 375 (437)
Q Consensus 300 Vev~TGEEnEevLFs~RAKLyrf~~--~eWKERGvG~LKLlk~ke~t~k~RIVMRrDgtlKVlLN~~I~~~Mkvt~~~-- 375 (437)
|+|.||||+|++||++|||||+|++ ++|+|||+|+||||+++++++++|||||+++++|||||++|+++|+|+++.
T Consensus 1 iev~tGEE~E~~lf~~raKL~~f~~~~~~WkerG~G~lkil~~k~~~~k~RllmR~d~~~kv~lN~~i~~~m~~~~~~~~ 80 (130)
T 3n7c_A 1 MSLTNGEENEEVLFCEKAKLLIFDSDTKGYTSRGVGELKLLRKKDDKGKVRVLCRSEGMGHVLLNTSVVKSFKYQPIDAD 80 (130)
T ss_dssp ---------CEEEEEEEEEEEEECC---CEEEEEEEEEEEEEETTEEEEEEEEEEC-CCCCEEEEEECCTTBCCEESCTT
T ss_pred CcccCCCcCeeEEEEEEEEEEEEeCCCCCchhcceEEEEEEEecCCCCEEEEEEEecCCceEEeeccccCCcEEeEcCCC
Confidence 5789999999999999999999975 589999999999999984478999999999999999999999999999875
Q ss_pred -CcceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHHHHhhh
Q 013715 376 -KKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKTT 422 (437)
Q Consensus 376 -kKsV~ftavnd~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK~~~~ 422 (437)
.+.|+|+++ +| +++++|+|||+++++|++|+++|++++..++
T Consensus 81 ~~~~v~~~~~---~d--gk~~~~~lrfks~e~A~~f~~~iee~~~~~~ 123 (130)
T 3n7c_A 81 NENLIKWPII---TD--GKLETFIIKVKQKADGRRLVGAVADAQQAME 123 (130)
T ss_dssp CTTEEEEEEE---ET--TEEEEEEEECSSHHHHHHHHHHHHHHHHHC-
T ss_pred CccEEEEEec---CC--CceEEEEEEECCHHHHHHHHHHHHHHHhhhc
Confidence 234455543 44 3589999999999999999999999998775
No 9
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A
Probab=100.00 E-value=1.2e-34 Score=257.62 Aligned_cols=123 Identities=28% Similarity=0.447 Sum_probs=97.6
Q ss_pred CcccccccCcccceeEEEEeeeEEEecc--CCccccceEEEEEEeecC---CCCceEEEEEeccceeEEeccccCCCCcc
Q 013715 297 MQEVVVETGEENEKVVFSADSVLFEFLD--GSWKERGKGELKVNVSTN---ATGRARLLMRARGNYRLILNASLYPDMKL 371 (437)
Q Consensus 297 l~eVev~TGEEnEevLFs~RAKLyrf~~--~eWKERGvG~LKLlk~ke---~t~k~RIVMRrDgtlKVlLN~~I~~~Mkv 371 (437)
|++|+|.||||+|++||++|||||+|++ ++|+|||+|+||||+|+. +++++|||||+++++||||||+|+++|+|
T Consensus 2 l~~v~v~tGEE~E~~~~~~raKL~~f~~~~~~WkERG~G~lkil~~k~~~~~t~k~RlvmR~d~~~kv~lN~~i~~~m~~ 81 (138)
T 2y8g_A 2 AMKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVAVGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQMQI 81 (138)
T ss_dssp ------------CEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEECTTTCCEEEEEEEEETTTCCEEEEEECCTTCCE
T ss_pred CCcccccCCCcCcEEEEEEEeEEEEEecCCCCchhceEEEEEEEEeccCCCCCccEEEEEEEcCcceEEEeeEecCCcee
Confidence 5789999999999999999999999985 789999999999999973 25899999999999999999999999999
Q ss_pred cccCCcceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHHHHhhh
Q 013715 372 TNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKTT 422 (437)
Q Consensus 372 t~~~kKsV~ftavnd~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK~~~~ 422 (437)
+++++|+|+|+|++. .++ .+.+|+|||++++.|+.|..++++++..+.
T Consensus 82 ~~~~~k~~~~~~~d~-~d~--~~~~~lirfk~~e~a~lf~~~~~~i~~lk~ 129 (138)
T 2y8g_A 82 DKASEKSIRITAMDT-EDQ--GVKVFLISASSKDTGQLYAALHHRILALRS 129 (138)
T ss_dssp EEEETTEEEEECCC---CC--CCCEEEEECCHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCEEEEEEecC-CCC--ceEEEEEEECCHHHHHHHHHHHHHHHHhhc
Confidence 988899999999854 343 477999999999999988888877775443
No 10
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=99.48 E-value=2.9e-13 Score=118.85 Aligned_cols=105 Identities=13% Similarity=0.213 Sum_probs=91.4
Q ss_pred cceeEEEEeeeEEEecc--CCccccceE-----EEEEEeecCCCCceEEEEEeccceeEEeccccCCCCcccccCCcceE
Q 013715 308 NEKVVFSADSVLFEFLD--GSWKERGKG-----ELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGIT 380 (437)
Q Consensus 308 nEevLFs~RAKLyrf~~--~eWKERGvG-----~LKLlk~ke~t~k~RIVMRrDgtlKVlLN~~I~~~Mkvt~~~kKsV~ 380 (437)
.|.+||++||+||.++. +.|..+|.| .++|+++.. +..+|||+|+.+..+||+|+.|+++|.|.+.....+.
T Consensus 2 ~E~~i~~~~A~V~~~d~~~~~W~~~g~G~~~l~~V~i~~~~~-~~~~Riv~~~~~~~~vi~n~~i~~~~~y~~~~~~Fh~ 80 (130)
T 1qc6_A 2 SEQSICQARASVMVYDDTSKKWVPIKPGQQGFSRINIYHNTA-SSTFRVVGVKLQDQQVVINYSIVKGLKYNQATPTFHQ 80 (130)
T ss_dssp CCEEEEEEEEEEEEEETTTTEEEECC-----CEEEEEEEETT-TTEEEEEEECTTTCCEEEEEECCTTCEEEEEETTEEE
T ss_pred CceeEEEEEEEEEEECCCCCceeECCCCceeeeEEEEEecCC-CcEEEEEEEeCCCCeEEEeeEEeCCcEEeccCCeeEE
Confidence 47899999999999974 689999998 889999986 8999999999889999999999999999987777788
Q ss_pred EEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHHHHhhh
Q 013715 381 FACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKTT 422 (437)
Q Consensus 381 ftavnd~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK~~~~ 422 (437)
|.. + -+.|-|.|.+.++|..|+++|+++.....
T Consensus 81 w~~-----~----~~~~GL~F~se~eA~~F~~~~~~al~~~~ 113 (130)
T 1qc6_A 81 WRD-----A----RQVYGLNFASKEEATTFSNAMLFALNIMN 113 (130)
T ss_dssp EEC-----S----SCEEEEEESCHHHHHHHHHHHHHHHHHTC
T ss_pred EEc-----C----CEEEEEecCCHHHHHHHHHHHHHHHHHHh
Confidence 752 1 26999999999999999999999987754
No 11
>2c1m_B Nucleoporin 50 kDa; protein transport/membrane protein, nuclear transport/complex, importin-alpha, nucleoporin NUP50; 2.2A {Mus musculus}
Probab=99.47 E-value=1.1e-14 Score=108.04 Aligned_cols=44 Identities=39% Similarity=0.538 Sum_probs=39.0
Q ss_pred ccccccccccCCCCCCCccccchhcccchhhhhHHHhhccceeeeccC
Q 013715 13 KRAAGRELSRDNPGLDDEEDSSELESGTFKKATDEVLATRRIVKVRRN 60 (437)
Q Consensus 13 KR~a~~qi~~d~~~~~~~~d~~~~~~gtf~~as~ev~a~r~ivk~r~~ 60 (437)
||+|+.|||+||+++ +|| ++++|||++||+|||++|+|+||||+
T Consensus 3 KR~A~~qlt~dn~~~--e~e--~ee~g~f~~AS~evl~~R~I~k~rRr 46 (46)
T 2c1m_B 3 KRVAEKELTDRNWDE--EDE--VEEMGTFSVASEEVMKNRAVKKAKRR 46 (46)
T ss_dssp CCCCSSCCCTTTSSC--CCC--CCCCCCCCBCCHHHHTTCCCCCCCCC
T ss_pred ccchhhhhccccccc--ccc--cccCCccccCCHHHHhccccccccCC
Confidence 999999999999876 332 46899999999999999999999884
No 12
>1un0_C Nucleoporin NUP2; nuclear import, armadillo repeat, NLS release, karyopherin recycling; 2.6A {Saccharomyces cerevisiae} PDB: 2c1t_C
Probab=99.41 E-value=5.1e-14 Score=106.41 Aligned_cols=47 Identities=21% Similarity=0.405 Sum_probs=38.1
Q ss_pred ccccccccccCCCCCCCccccchhcccchhhhhHHHhhccceeeeccCCC
Q 013715 13 KRAAGRELSRDNPGLDDEEDSSELESGTFKKATDEVLATRRIVKVRRNQT 62 (437)
Q Consensus 13 KR~a~~qi~~d~~~~~~~~d~~~~~~gtf~~as~ev~a~r~ivk~r~~~~ 62 (437)
||+|+.||||||+++++|+ +++.+ +|++||+|||++|||+||||+..
T Consensus 3 KR~A~~qlTrdn~~~e~d~--ee~~~-~~~~AS~eVl~~RkI~k~krr~~ 49 (51)
T 1un0_C 3 KRVADAQIQRETYDSNESD--DDVTP-STKVASSAVMNRRKIAMPKRRMA 49 (51)
T ss_pred ccccchhhccccccccccc--cccCc-ccccCCHHHHhcCcccccccccc
Confidence 9999999999999873333 33333 56899999999999999988754
No 13
>3tj3_C Nuclear pore complex protein NUP50; armadillo repeat, nuclear import adaptor, NLS-bearing protei nucleo-cytoplasmic shuttling, protein transport; 2.70A {Homo sapiens}
Probab=99.32 E-value=3.4e-13 Score=116.30 Aligned_cols=60 Identities=35% Similarity=0.519 Sum_probs=39.9
Q ss_pred cccccccccccCCCCCCCccccchhcccchhhhhHHHhhccceeeeccCCCCC-CCCCCCcccee
Q 013715 12 KKRAAGRELSRDNPGLDDEEDSSELESGTFKKATDEVLATRRIVKVRRNQTAS-TPSSNPFAGIR 75 (437)
Q Consensus 12 ~KR~a~~qi~~d~~~~~~~~d~~~~~~gtf~~as~ev~a~r~ivk~r~~~~~~-~~~~npf~~i~ 75 (437)
-||+|..||||||+.+++ ++++.|+|++||+|||++|+|+|+||++..+ +.++++|.++.
T Consensus 7 AKR~A~~qLT~dNwd~ee----d~ee~GtF~~AS~eVLs~RkIkkaKRr~~~~~s~~~gaFkgFk 67 (114)
T 3tj3_C 7 AKRNAEKELTDRNWDQED----EAEEVGTFSMASEEVLKNRAIKKAKRRNVGFESDTGGAFKGFK 67 (114)
T ss_dssp CCCCCSSCCCTTTSSSCC----CCCCCCCCCBCCHHHHHHSCCCCCCCCC---------------
T ss_pred hhhccccccccccccccc----cccccCCcccCCHHHHhccccccccccCCCCCCCCcccccccc
Confidence 499999999999988632 2357999999999999999999997775543 33466776665
No 14
>1ddw_A GLGF-domain protein homer; pleckstrin homology domain fold, signaling protein; 1.70A {Rattus norvegicus} SCOP: b.55.1.4 PDB: 1ddv_A 2p8v_A 1i7a_A*
Probab=99.13 E-value=7.6e-10 Score=96.46 Aligned_cols=105 Identities=16% Similarity=0.279 Sum_probs=88.6
Q ss_pred cceeEEEEeeeEEEecc---CCccccc--eEEEEEEeecCCCCceEEEEEeccceeEEeccccCCCCcccccCCcceEEE
Q 013715 308 NEKVVFSADSVLFEFLD---GSWKERG--KGELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFA 382 (437)
Q Consensus 308 nEevLFs~RAKLyrf~~---~eWKERG--vG~LKLlk~ke~t~k~RIVMRrDgtlKVlLN~~I~~~Mkvt~~~kKsV~ft 382 (437)
.|.+||+.||.||.+++ +.|..+| .|.+.|.++.. .+.+||+.|++ .+++||+.|+++|.|.+...+...|.
T Consensus 2 ~E~~i~~~rA~V~~~D~~tk~~W~p~g~~~~~V~~~~d~~-~~~yRIv~~~~--~~vv~n~~i~~~l~y~~a~p~FhqW~ 78 (120)
T 1ddw_A 2 GEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDST-RNVYRIISLDG--SKAIINSTITPNMTFTKTSQKFGQWA 78 (120)
T ss_dssp CEEEEEEEEEEEEEECTTTSCSEEESCSSCEEEEEEEETT-TTEEEEEEEET--TEEEEEEECCTTCCCEECSSSEEEEE
T ss_pred CceEEEEEEEEEEEEcCCCCCceEeCCCCceEEEEEEcCC-CCEEEEEEccC--CEEEEeCEecCCcEEeeCCccccEEE
Confidence 47899999999999975 4999954 45555777765 67899999884 68999999999999999888888888
Q ss_pred eeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHHHHhhh
Q 013715 383 CINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKTT 422 (437)
Q Consensus 383 avnd~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK~~~~ 422 (437)
.. ...+.|-|.|.++++|+.|...|+++++...
T Consensus 79 d~-------~~~~~~GLnF~s~~eA~~F~~~~~~~~~~l~ 111 (120)
T 1ddw_A 79 DS-------RANTVYGLGFSSEHHLSKFAEKFQEFKEAAR 111 (120)
T ss_dssp ET-------TTTEEEEEECSSHHHHHHHHHHHHHHHHHHC
T ss_pred cC-------CCcEEEEeccCCHHHHHHHHHHHHHHHHHHH
Confidence 32 1247999999999999999999999998765
No 15
>1i2h_A PSD-ZIP45(homer-1C/VESL-1L); enabled VAsp homology 1 domain, signaling protein; 1.80A {Rattus norvegicus} SCOP: b.55.1.4
Probab=99.03 E-value=2e-09 Score=98.89 Aligned_cols=105 Identities=17% Similarity=0.296 Sum_probs=87.6
Q ss_pred cceeEEEEeeeEEEecc---CCccccceE--EEEEEeecCCCCceEEEEEeccceeEEeccccCCCCcccccCCcceEEE
Q 013715 308 NEKVVFSADSVLFEFLD---GSWKERGKG--ELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFA 382 (437)
Q Consensus 308 nEevLFs~RAKLyrf~~---~eWKERGvG--~LKLlk~ke~t~k~RIVMRrDgtlKVlLN~~I~~~Mkvt~~~kKsV~ft 382 (437)
.|.+||++||.||.+++ ..|...|.| .+.|.++.. ...+||+.|++ .+|+||+.|+++|.|.+...+...|.
T Consensus 7 ~E~~I~s~rA~Vm~~D~~tk~~WvP~g~~~~~V~i~~d~~-rnsyRIvg~~d--~kvvinc~I~~~l~Y~kasp~FHqW~ 83 (168)
T 1i2h_A 7 GEQPIFSTRAHVFQIDPNTKKNWVPTSKHAVTVSYFYDST-RNVYRIISLDG--SKAIINSTITPNMTFTKTSQKFGQWA 83 (168)
T ss_dssp SSCCSEEEEEEEEEECTTSSCCSEESCSSCEEEEEEEETT-TTEEEEEEEET--TEEEEEEECCTTCCEEEEETTEEEEE
T ss_pred cceeEEEEEEEEEEECCCCCCceeecCCCCeEEEEEEcCC-CCEEEEEEccC--CEEEEecEecCCcEEeeCCcccceee
Confidence 57889999999999975 389995544 444777764 67899999984 68999999999999999888888888
Q ss_pred eeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHHHHhhh
Q 013715 383 CINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKTT 422 (437)
Q Consensus 383 avnd~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK~~~~ 422 (437)
.. ...+.|-|.|.+.++|..|...|+++++...
T Consensus 84 d~-------~~~~v~GLnF~Se~eA~~F~~~~~~ale~l~ 116 (168)
T 1i2h_A 84 DS-------RANTVYGLGFSSEHHLSKFAEKFQEFKEAAR 116 (168)
T ss_dssp ET-------TTTEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred cC-------CCcEEEEeccCCHHHHHHHHHHHHHHHHHHH
Confidence 52 1247999999999999999999999886653
No 16
>1egx_A VAsp, vasodilator-stimulated phosphoprotein; EVH1, VAsp-ENA, poly-proline-binding domain, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.4
Probab=98.79 E-value=4.8e-08 Score=84.37 Aligned_cols=103 Identities=14% Similarity=0.267 Sum_probs=88.7
Q ss_pred ceeEEEEeeeEEEecc--CCccccce---E--EEEEEeecCCCCceEEEEEecc-ceeEEeccccCCCCcccccCCcceE
Q 013715 309 EKVVFSADSVLFEFLD--GSWKERGK---G--ELKVNVSTNATGRARLLMRARG-NYRLILNASLYPDMKLTNMDKKGIT 380 (437)
Q Consensus 309 EevLFs~RAKLyrf~~--~eWKERGv---G--~LKLlk~ke~t~k~RIVMRrDg-tlKVlLN~~I~~~Mkvt~~~kKsV~ 380 (437)
|.+|+++||.||.++. +.|.-.|. | .|.|.++.. ...|||++|+-+ ..++++|+.|+++|.|.......-.
T Consensus 3 e~~i~~~~A~V~~~d~~~~~W~p~~~g~~gvs~V~~~~d~~-~~~yrI~~~~l~~~~~vv~~~~l~~~l~y~~~~p~FH~ 81 (115)
T 1egx_A 3 ETVICSSRATVMLYDDGNKRWLPAGTGPQAFSRVQIYHNPT-ANSFRVVGRKMQPDQQVVINCAIVRGVKYNQATPNFHQ 81 (115)
T ss_dssp SCEEEEEEEECBEECTTTSSCCBSSCSCCCCEEEEEEEETT-TTEEEEEEEESSTTCCEEEEEEECSSCCCCCSSTTEEE
T ss_pred ceeEEEEEEEEEEEcCCCCceeECCCCCCCccEEEEEEeCC-CCEEEEEEEEcCCCCEEEEeeEEcCCceEEecCccceE
Confidence 6889999999999974 56999886 4 599999875 789999999977 8899999999999999987777777
Q ss_pred EEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHHHHhh
Q 013715 381 FACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKT 421 (437)
Q Consensus 381 ftavnd~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK~~~ 421 (437)
|... -..|-|.|.+.++|..|...|.++....
T Consensus 82 w~~~---------~~~~GLnF~se~eA~~F~~~v~~al~~l 113 (115)
T 1egx_A 82 WRDA---------RQVWGLNFGSKEDAAQFAAGMASALEAL 113 (115)
T ss_dssp EESS---------SCEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred EecC---------CEEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 7631 2689999999999999999999987654
No 17
>1evh_A WH1 domain, protein (MENA EVH1 domain); molecular recognition, actin dynamics, contractIle protein; 1.80A {Mus musculus} SCOP: b.55.1.4 PDB: 2xqn_M 2iyb_A
Probab=98.77 E-value=7.1e-08 Score=82.87 Aligned_cols=103 Identities=15% Similarity=0.268 Sum_probs=87.3
Q ss_pred cceeEEEEeeeEEEecc--CCccccce--E--EEEEEeecCCCCceEEEEEeccceeEEeccccCCCCcccccCCcceEE
Q 013715 308 NEKVVFSADSVLFEFLD--GSWKERGK--G--ELKVNVSTNATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGITF 381 (437)
Q Consensus 308 nEevLFs~RAKLyrf~~--~eWKERGv--G--~LKLlk~ke~t~k~RIVMRrDgtlKVlLN~~I~~~Mkvt~~~kKsV~f 381 (437)
.|..|+++||.+|.++. +.|.-.|. | .|.|.++.. ...|||+.|+-+..++++|+.|+++|.|.......-.|
T Consensus 2 ~e~~i~~~~A~V~~~d~~~~~W~p~~~~~g~s~V~~~~d~~-~~~yrIv~~~l~~~~vv~~~~l~~~~~y~~~~p~Fh~w 80 (112)
T 1evh_A 2 SEQSICQARAAVMVYDDANKKWVPAGGSTGFSRVHIYHHTG-NNTFRVVGRKIQDHQVVINCAIPKGLKYNQATQTFHQW 80 (112)
T ss_dssp CEEEEEEEEEEEEEEETTTTEEEEGGGCCSCEEEEEEEETT-TTEEEEEEEETTTCCEEEEEEECTTCCCBCCSSSEEEE
T ss_pred CceeEEEEEEEEEEEcCCCCceEECCCCCCceEEEEEEECC-CCEEEEEEEECCCCcEEEeeEecCCceEEecCccceeE
Confidence 37899999999999974 68999873 3 388888864 67899999997788999999999999999877777777
Q ss_pred EeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHHHHh
Q 013715 382 ACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDK 420 (437)
Q Consensus 382 tavnd~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK~~ 420 (437)
... -..|-|-|.+.++|..|...|.++...
T Consensus 81 ~~~---------~~~~GLnF~se~eA~~F~~~v~~al~~ 110 (112)
T 1evh_A 81 RDA---------RQVYGLNFGSKEDANVFASAMMHALEV 110 (112)
T ss_dssp ECS---------SCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred ecC---------CEEEEEecCCHHHHHHHHHHHHHHHHh
Confidence 631 268999999999999999999988764
No 18
>1xod_A Spred1; sprouty, EVH1, peptide-binding, signaling protein; 1.15A {Xenopus tropicalis} SCOP: b.55.1.4 PDB: 1tj6_A
Probab=98.55 E-value=4.2e-07 Score=78.83 Aligned_cols=105 Identities=13% Similarity=0.191 Sum_probs=81.9
Q ss_pred cceeEEEEeeeEEEecc--CCccccceEE---EEEEeec----CCCCceEEEEEeccceeEEeccccCCCCcccccCCcc
Q 013715 308 NEKVVFSADSVLFEFLD--GSWKERGKGE---LKVNVST----NATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKG 378 (437)
Q Consensus 308 nEevLFs~RAKLyrf~~--~eWKERGvG~---LKLlk~k----e~t~k~RIVMRrDgtlKVlLN~~I~~~Mkvt~~~kKs 378 (437)
.|..|+++||.+|.+++ +.|.-.|.|- +.|..++ .....|||+.|+-+..+|++|+.|+++|.|.......
T Consensus 2 ~~~~i~~~~A~V~~~d~~~~~W~p~~~g~ls~v~i~~~~~~~d~~~~~yrIv~~~l~~~~vv~~~~l~~~~~y~~~~p~F 81 (118)
T 1xod_A 2 SDDSYARVRAVVMTRDDSSGGWLQLGGGGLSSVTVSKTLQPGDSGGTEFLVHGERLRDKTVVLECVLRRDLVYNKVTPTF 81 (118)
T ss_dssp ---CCEEEEEEEEEECSSSSCEEEGGGCCCEEEEEECC---------CCEEEEEETTTCCEEEEEECCTTCEEEEEETTE
T ss_pred CCccEEEEEEEEeeEcCCCCCEeeCCCCCcccEEEEEecCcCCCCCCEEEEEEEECCCCeEEEEEEEeCCcEEEecCCcc
Confidence 36789999999999974 7899987655 4555543 1257899999997778999999999999999876777
Q ss_pred eEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHHHHhh
Q 013715 379 ITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKT 421 (437)
Q Consensus 379 V~ftavnd~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK~~~ 421 (437)
-.|... -+.|-|.|.+.++|..|..+|.++.+..
T Consensus 82 h~w~~~---------~~~~GL~F~se~eA~~F~~~v~~al~~l 115 (118)
T 1xod_A 82 HHWRIG---------DKKFGLTFQSPADARAFDRGIRRAIEDL 115 (118)
T ss_dssp EEEEET---------TEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEeC---------CEEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 777741 2569999999999999999999987654
No 19
>2jp2_A Spred-2, sprouty-related, EVH1 domain-containing protein 2; solution structure, structural genomics, structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.50 E-value=1e-06 Score=77.38 Aligned_cols=106 Identities=14% Similarity=0.211 Sum_probs=86.9
Q ss_pred ccceeEEEEeeeEEEecc--CCccccceEE---EEEEeec----CCCCceEEEEEeccceeEEeccccCCCCcccccCCc
Q 013715 307 ENEKVVFSADSVLFEFLD--GSWKERGKGE---LKVNVST----NATGRARLLMRARGNYRLILNASLYPDMKLTNMDKK 377 (437)
Q Consensus 307 EnEevLFs~RAKLyrf~~--~eWKERGvG~---LKLlk~k----e~t~k~RIVMRrDgtlKVlLN~~I~~~Mkvt~~~kK 377 (437)
..|..|+++||.+|.+++ +.|.-.|.|- +.|...+ .....|||+.|+-+-.++++|+.|+++|.|......
T Consensus 10 ~~~~~i~~~~A~Vm~~D~~~~~W~p~~~g~ls~v~v~~~~~~~d~~~~~yrI~~~~l~d~~vv~~~~l~~~l~Y~~~~p~ 89 (126)
T 2jp2_A 10 DDDSYIVRVKAVVMTRDDSSGGWFPQEGGGISRVGVCKVMHPEGNGRSGFLIHGERQKDKLVVLECYVRKDLVYTKANPT 89 (126)
T ss_dssp SCCSEEEEEEEEEEEECTTSSSSEECSCCSCEEEEEECCBCTTCSSCBCEEEEEEESSSSCEEEEEEESSCCCEEEEETT
T ss_pred CCcceEEEEEEEEeeEcCCCCCEeeCCCCCcccEEEEEecCCCCCCCCEEEEEEEEcCCCeEEEEEEEeCCceEEecCCc
Confidence 467899999999999974 6899988765 4455443 125789999999778899999999999999987777
Q ss_pred ceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHHHHhh
Q 013715 378 GITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKT 421 (437)
Q Consensus 378 sV~ftavnd~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK~~~ 421 (437)
.-.|... -+.|-|.|.+.++|..|..+|.++.+.+
T Consensus 90 FH~w~~~---------~~~~GLnF~se~eA~~F~~~v~~al~~l 124 (126)
T 2jp2_A 90 FHHWKVD---------NRKFGLTFQSPADARAFDRGVRKAIEDL 124 (126)
T ss_dssp EEEEECS---------SSEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEcC---------CEEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 7777732 1469999999999999999999987654
No 20
>3syx_A Sprouty-related, EVH1 domain-containing protein 1; WH1 domain, human sprouty-related, EVH1 domain-containing PR Q7Z699; 2.45A {Homo sapiens}
Probab=97.85 E-value=0.00022 Score=63.13 Aligned_cols=105 Identities=12% Similarity=0.138 Sum_probs=84.0
Q ss_pred eeEEEEeeeEEEecc--CCccccc---eEEEEEEeecC----CCCceEEEEEeccceeEEeccccCCCCcccccCCcceE
Q 013715 310 KVVFSADSVLFEFLD--GSWKERG---KGELKVNVSTN----ATGRARLLMRARGNYRLILNASLYPDMKLTNMDKKGIT 380 (437)
Q Consensus 310 evLFs~RAKLyrf~~--~eWKERG---vG~LKLlk~ke----~t~k~RIVMRrDgtlKVlLN~~I~~~Mkvt~~~kKsV~ 380 (437)
...|.+||.+|.|++ +.|.--| +-.+.|.++.. +...+||+=|+-+-.+||||..|.++|+|.+.....=.
T Consensus 11 ~~~~~~rA~Vm~~Dd~tk~WlP~gg~glS~v~iy~~~~~~~~~~~~yRIvg~r~~d~~vvinc~I~~~l~Ynkatp~FHq 90 (130)
T 3syx_A 11 MSYARVRAVVMTRDDSSGGWLPLGGSGLSSVTVFKVPHQEENGCADFFIRGERLRDKMVVLECMLKKDLIYNKVTPTFHH 90 (130)
T ss_dssp TEEEEEEEEEEEECSSSSCEEESSSSCCEEEEEEEEESSSTTSSEEEEEEEEETTTCCEEEEEECCTTCEEEEEETTEEE
T ss_pred ceeeEEEEEeeeEcCCCCceEeCCCCCCceEEEEeccCCCCCCCcEEEEEEEecCCCeEEEeeeecCCceEEeccccccc
Confidence 357899999999985 6798864 44666666421 12579999998777789999999999999988777767
Q ss_pred EEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHHHHhhhc
Q 013715 381 FACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKTTA 423 (437)
Q Consensus 381 ftavnd~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK~~~~~ 423 (437)
|... -+.|=|.|.++++|..|...|..+.+.+..
T Consensus 91 Wrd~---------~~~yGL~F~S~~dA~~F~~~~~~Al~~L~~ 124 (130)
T 3syx_A 91 WKID---------DKKFGLTFQSPADARAFDRGIRRAIEDISQ 124 (130)
T ss_dssp EEET---------TEEEEEEESSHHHHHHHHHHHHHHHHGGGS
T ss_pred cccc---------CeEeecccCCHHHHHHHHHHHHHHHHHHhc
Confidence 7631 256999999999999999999998887754
No 21
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4
Probab=96.82 E-value=0.019 Score=51.91 Aligned_cols=100 Identities=18% Similarity=0.198 Sum_probs=77.6
Q ss_pred eeEEEEeeeEEEecc-CCccccceEEEEEEeecCCCCc--eEEEEEeccceeEEeccccCCCCcccccCCcceEEEeecc
Q 013715 310 KVVFSADSVLFEFLD-GSWKERGKGELKVNVSTNATGR--ARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINS 386 (437)
Q Consensus 310 evLFs~RAKLyrf~~-~eWKERGvG~LKLlk~ke~t~k--~RIVMRrDgtlKVlLN~~I~~~Mkvt~~~kKsV~ftavnd 386 (437)
.+|...=|.||.... +.|.-++.|.|-|.+... ... .||+-+.. .++++++-|+.+|.+.........|-.
T Consensus 41 ~~lataVaqLy~a~~~~~W~~~~~Gal~~VkD~~-~rsyf~RlvDl~~--~~viweqELY~~f~Y~~~r~~FHtFe~--- 114 (152)
T 1mke_A 41 VTMSSAVVQLYAADRNCMWSKKCSGVACLVKDNP-QRSYFLRIFDIKD--GKLLWEQELYNNFVYNSPRGYFHTFAG--- 114 (152)
T ss_dssp EEEEEEEEEEEEEETTTEEEEEEEEEEEEEEETT-TTEEEEEEECSSS--CSEEEEEECCSSCCCBCSSSSEEEEEC---
T ss_pred cEEEEeeEEEEEECCCCceEecCceEEEEEEECC-CCeEEEEEEEccC--CeEEEEeecccceeeccCCCeEEEEec---
Confidence 477777889999965 589999999999998763 233 38888864 589999999999999765444344432
Q ss_pred CCCCCccceEEEEEeCCHHHHHHHHHHHHHHHHhh
Q 013715 387 ATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKT 421 (437)
Q Consensus 387 ~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK~~~ 421 (437)
+ -..+-|.|-+.+.|..|+++|.......
T Consensus 115 --d----~c~~GLnFade~EA~~F~~~V~~~l~~~ 143 (152)
T 1mke_A 115 --D----TCQVALNFANEEEAKKFRKAVTDLLGRR 143 (152)
T ss_dssp --S----SSEEEEEESSHHHHHHHHHHHHHHHHHC
T ss_pred --C----CcEEEEeeCCHHHHHHHHHHHHHHHHHH
Confidence 2 3579999999999999999999876554
No 22
>2ifs_A N-WAsp, wiskott-aldrich syndrome protien ineracting protein and neural wiskott-aldrich syndrome...; verprolin, polyproline, protein- protein complex; NMR {Homo sapiens}
Probab=96.59 E-value=0.014 Score=53.52 Aligned_cols=100 Identities=18% Similarity=0.198 Sum_probs=77.9
Q ss_pred eeEEEEeeeEEEecc-CCccccceEEEEEEeecCCCCc--eEEEEEeccceeEEeccccCCCCcccccCCcceEEEeecc
Q 013715 310 KVVFSADSVLFEFLD-GSWKERGKGELKVNVSTNATGR--ARLLMRARGNYRLILNASLYPDMKLTNMDKKGITFACINS 386 (437)
Q Consensus 310 evLFs~RAKLyrf~~-~eWKERGvG~LKLlk~ke~t~k--~RIVMRrDgtlKVlLN~~I~~~Mkvt~~~kKsV~ftavnd 386 (437)
.+|..+=|.||..+. +.|.-++.|.|-|.+... ... .|||-+.. .+|++++-|+.+|.+.........|-.
T Consensus 58 ~~lataVaqLy~a~~~~~W~~~~~Gal~~vkD~~-~rsyf~RlvDl~~--~~vvweqELY~~f~Y~~~r~~FHtFe~--- 131 (169)
T 2ifs_A 58 VTMSSAVVQLYAADRNCMWSKKCSGVACLVKDNP-QRSYFLRIFDIKD--GKLLWEQELYNNFVYNSPRGYFHTFAG--- 131 (169)
T ss_dssp EEEEEEEEEEEEEETTTEEEEEEEEEEEEEEETT-TTEEEEEEEETTT--CCCCEEEECCSSCCCBCCCSSEEEEEC---
T ss_pred eEEEEEEEEEEEECCCCeeEecCceEEEEEEECC-CCeEEEEEEEccC--CeEEEEeecccceeeccCCCeEEEeec---
Confidence 467777889999965 589999999999988753 223 38888874 589999999999999765444344431
Q ss_pred CCCCCccceEEEEEeCCHHHHHHHHHHHHHHHHhh
Q 013715 387 ATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDKT 421 (437)
Q Consensus 387 ~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK~~~ 421 (437)
+ -..+-|.|-+.+.|..|+.+|.......
T Consensus 132 --d----~c~~GLnFade~EA~~F~~~V~~~l~~~ 160 (169)
T 2ifs_A 132 --D----TCQVALNFANEEEAKKFRKAVTDLLGRR 160 (169)
T ss_dssp --S----SSEEEEECSCHHHHHHHHHHHHHHHHHC
T ss_pred --C----CcEEEEeeCCHHHHHHHHHHHHHHHHHH
Confidence 2 3579999999999999999999876554
No 23
>2oqb_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase, transcriptional regulati activation domain; 1.69A {Rattus norvegicus}
Probab=91.60 E-value=0.95 Score=39.43 Aligned_cols=55 Identities=5% Similarity=0.126 Sum_probs=45.9
Q ss_pred eeEEeccccCCCCcccccCCcceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHHHHh
Q 013715 357 YRLILNASLYPDMKLTNMDKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDK 420 (437)
Q Consensus 357 lKVlLN~~I~~~Mkvt~~~kKsV~ftavnd~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK~~ 420 (437)
...++=..|.++..+.++++++++|+.- ....||||.+..+...|+..|+.++..
T Consensus 54 ~~~l~ef~V~~~TEc~rVGk~S~litlg---------~~slLl~Fas~~d~~~F~~~l~k~~~~ 108 (117)
T 2oqb_A 54 DVCVFKCSVSRETECSRVGRQSFIITLG---------CNSVLIQFATPHDFCSFYNILKTCRGH 108 (117)
T ss_dssp CCEEEEEEEETTSEEEEETTTEEEEEET---------TEEEEEECSSHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEEEecCCccceeecCeEEEEEEC---------CcEEEEEeCCHHHHHHHHHHHHHHhcC
Confidence 4455556778888999999999998852 458999999999999999999999864
No 24
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=84.34 E-value=20 Score=31.39 Aligned_cols=98 Identities=8% Similarity=0.143 Sum_probs=67.6
Q ss_pred eeEEEE-eeeEEEecc--CCccccce-EEEEEEeecCCCCceEEEEEe-ccceeEEeccccCCCCcccccCCcceEEEee
Q 013715 310 KVVFSA-DSVLFEFLD--GSWKERGK-GELKVNVSTNATGRARLLMRA-RGNYRLILNASLYPDMKLTNMDKKGITFACI 384 (437)
Q Consensus 310 evLFs~-RAKLyrf~~--~eWKERGv-G~LKLlk~ke~t~k~RIVMRr-DgtlKVlLN~~I~~~Mkvt~~~kKsV~ftav 384 (437)
++|+.+ .|-||.|+. ++|...|+ |+|.|-+... .-+++|++=+ .++--++. .|.++|.+...+ ..++|-.-
T Consensus 30 ~Il~~a~~v~vY~f~~~~~~W~K~~iEG~LFv~~R~~-~P~~~~ivLNR~~~~n~~~--~l~~~~~~e~~~-~~li~r~~ 105 (134)
T 2lyd_A 30 EIVDSSSHVAFYTFNSSQNEWEKTDVEGAFFIYHRNA-EPFHSIFINNRLNTTSFVE--PITGSLELQSQP-PFLLYRNE 105 (134)
T ss_dssp EEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEECSS-SSSEEEEEEETTTTEEEEE--ECCSSCEEEEET-TEEEEEEG
T ss_pred HHHhhCCeEEEEEecCCcCceeEcCCcceEEEEEccC-CCceEEEEEcCCCCcceeE--EcCCCcEEEeeC-CEEEEECC
Confidence 455544 689999975 68988876 8999887653 4566654433 33443444 478888888763 45555421
Q ss_pred ccCCCCCccceEEEEEeCCHHHHHHHHHHHHHHHH
Q 013715 385 NSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKD 419 (437)
Q Consensus 385 nd~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK~ 419 (437)
.-..|-|=|-+.++++++.+.|+....
T Consensus 106 --------~~~I~GiWf~~~~d~~~i~~~l~~l~~ 132 (134)
T 2lyd_A 106 --------RSRIRGFWFYNSEECDRISGLVNGLLK 132 (134)
T ss_dssp --------GGEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred --------CCcEEEEEecChHHHHHHHHHHHHHHh
Confidence 135788999999999999999887754
No 25
>2qkl_A DCP1 protein, SPBC3B9.21 protein; protein-protein complex, hydrolase; 2.33A {Schizosaccharomyces pombe} PDB: 2qkm_A*
Probab=79.44 E-value=26 Score=30.40 Aligned_cols=96 Identities=10% Similarity=0.138 Sum_probs=63.2
Q ss_pred eeEEE-EeeeEEEec--cCCccccce-EEEEEEeecCCCCceEEE-EEeccceeEEeccccCCCCcccccCCcceEEEee
Q 013715 310 KVVFS-ADSVLFEFL--DGSWKERGK-GELKVNVSTNATGRARLL-MRARGNYRLILNASLYPDMKLTNMDKKGITFACI 384 (437)
Q Consensus 310 evLFs-~RAKLyrf~--~~eWKERGv-G~LKLlk~ke~t~k~RIV-MRrDgtlKVlLN~~I~~~Mkvt~~~kKsV~ftav 384 (437)
++|.. ..|-||.|+ .++|...|+ |+|-|-+.. .-+++|+ |=|.+.--+++ .|.++|.++..+ ..+++-..
T Consensus 25 ~Il~~a~~v~vY~f~~~~~~W~K~~iEGtLFv~~R~--~P~~~~iVlNR~~~~n~~~--~i~~~~~~e~~~-~~l~~r~~ 99 (127)
T 2qkl_A 25 SIIDIASHVAVYQFDVGSQKWLKTSIEGTFFLVKDQ--RARVGYVILNRNSPENLYL--FINHPSNVHLVD-RYLIHRTE 99 (127)
T ss_dssp EEEEEEEEEEEECC------CCEEEEEEEEEEEEET--TCCEEEEEEESSSSCCEEE--EECSGGGEEEET-TEEEEEET
T ss_pred HHhccCCeEEEEEecCCCCceEEcCcEEEEEEEEcc--CCceEEEEEcCCCCcCeeE--ecCCCceEEEeC-CEEEEEcC
Confidence 34444 468999998 479999986 888888765 3455554 44444443444 367788888664 45555431
Q ss_pred ccCCCCCccceEEEEEeCCHHHHHHHHHHHHHHH
Q 013715 385 NSATEGKSGLSTFALKFRDASIVEEFQTAVAAHK 418 (437)
Q Consensus 385 nd~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK 418 (437)
....|-|=|-+.++++...+.|+...
T Consensus 100 --------~~~i~GiWf~~~~d~~~i~~~l~~ll 125 (127)
T 2qkl_A 100 --------NQHVVGLWMFDPNDMSRIFNIVKESL 125 (127)
T ss_dssp --------TTEEEEEEESSTHHHHHHHHHHHHHT
T ss_pred --------CCcEEEEEEEchHHHHHHHHHHHHHH
Confidence 14689999999999999999888753
No 26
>1o6o_D Nucleoporin NSP1; nuclear transport, nuclear trafficking, transport factor, repeat, protein transport; 2.80A {Saccharomyces cerevisiae}
Probab=69.41 E-value=4.6 Score=35.19 Aligned_cols=48 Identities=29% Similarity=0.392 Sum_probs=23.8
Q ss_pred CCCCcccccccCccccccccccCCCccccceeecCCCCCCCC-CCCCCCcccccc
Q 013715 217 DSSQLSSFGQLSSTQNAFTGLAGTGFSTSTFAFGSIPKDGSA-SNSTSASVFGQV 270 (437)
Q Consensus 217 ~~~~~fSF~~~ss~~naFtg~agtg~SsssFsFG~~~~~~~~-~s~~s~~~FG~~ 270 (437)
.+.|.||||...... . ...-+...|+||........ ....++++||..
T Consensus 34 ~~kPaFSFG~k~~~~----k--~~~~sKPaFSFGs~~~~~~~~~~~kp~FSFGak 82 (119)
T 1o6o_D 34 VSKPAFSFGAKANEK----K--ESDESKSAFSFGSKPTGKEEGDGAKAAISFGAK 82 (119)
T ss_pred cCCcccccCCCCCcc----c--cccCCCcccccccCCCccccccCCCCccccccC
Confidence 467778887753221 0 11123466888875443221 122234667653
No 27
>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: b.55.1.11
Probab=56.71 E-value=30 Score=30.63 Aligned_cols=108 Identities=16% Similarity=0.265 Sum_probs=76.0
Q ss_pred cccceeEEEEe-eeEEEecc---------CCccc---cceEEEEEEeecCCCCceEEEEEeccceeEEecccc--CCCCc
Q 013715 306 EENEKVVFSAD-SVLFEFLD---------GSWKE---RGKGELKVNVSTNATGRARLLMRARGNYRLILNASL--YPDMK 370 (437)
Q Consensus 306 EEnEevLFs~R-AKLyrf~~---------~eWKE---RGvG~LKLlk~ke~t~k~RIVMRrDgtlKVlLN~~I--~~~Mk 370 (437)
++=|.+||.++ |-+|+.-. ..|.. .=.|-|||... ..++-|.+-...++.|.++++| ++...
T Consensus 5 ~~~E~vL~v~~ev~VY~IPP~~s~~GyrA~dW~~~~~~wtGrlrv~~~---g~~~~I~LeD~~tGeLFA~cPv~~~~~~~ 81 (133)
T 1tqz_A 5 LEYESVLCVKPDVSVYRIPPRASNRGYRASDWKLDQPDWTGRLRITSK---GKIAYIKLEDKVSGELFAQAPVEQYPGIA 81 (133)
T ss_dssp CCCSCCCBCCSSEEEEECCSCCSSSSCCHHHHCCSSSCEEEEEEEECC---SSSEEEEEECSSCCSSCEEEEECSSCCCC
T ss_pred cceeEEEEEcCcEEEEecCCCCCCCCcccccCCCCCceeEEEEEEEEe---CCEEEEEEEeCCCCcEEEeCcccCCCCcc
Confidence 34567888876 67777742 35653 46788999865 3577777777778899999999 66676
Q ss_pred cccc--CCcceEEEeeccCCCCCccceEEEEEeCCHHHHHHHHHHHHHHHHh
Q 013715 371 LTNM--DKKGITFACINSATEGKSGLSTFALKFRDASIVEEFQTAVAAHKDK 420 (437)
Q Consensus 371 vt~~--~kKsV~ftavnd~sEgk~kl~tylLRFKtaE~AdeF~kaIeeaK~~ 420 (437)
+.+. +.+...+-..+ +.+.-.-+=|=|..-.+|=.|.-+|++|..-
T Consensus 82 VE~v~DSSRYFVlRv~d----~~gr~AfiGiGF~eR~dAFDF~vaLqd~~k~ 129 (133)
T 1tqz_A 82 VETVTDSSRYFVIRIQD----GTGRSAFIGIGFTDRGDAFDFNVSLQDHFKW 129 (133)
T ss_dssp EEECTTCCSCEEEEEEE----TTTEEEEEEEECSCHHHHHHHHHHHHHHHSC
T ss_pred eEEeecCcCeEEEEEEC----CCCcEEEEeeeecccccccchHHHHHHHHHH
Confidence 7765 24555444443 2234455668899999999999999998753
No 28
>1o6o_D Nucleoporin NSP1; nuclear transport, nuclear trafficking, transport factor, repeat, protein transport; 2.80A {Saccharomyces cerevisiae}
Probab=50.77 E-value=15 Score=31.87 Aligned_cols=12 Identities=33% Similarity=0.398 Sum_probs=6.3
Q ss_pred CCCcccccccCc
Q 013715 218 SSQLSSFGQLSS 229 (437)
Q Consensus 218 ~~~~fSF~~~ss 229 (437)
..|.||||....
T Consensus 54 sKPaFSFGs~~~ 65 (119)
T 1o6o_D 54 SKSAFSFGSKPT 65 (119)
T ss_pred CCcccccccCCC
Confidence 355566666433
No 29
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=26.46 E-value=3e+02 Score=23.37 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=51.2
Q ss_pred cceeEEEEeeeEEEeccCCccccceEEEEEEeecCCCCceEEEEEeccc--eeEEeccccCCCCcccccCCcceEEEeec
Q 013715 308 NEKVVFSADSVLFEFLDGSWKERGKGELKVNVSTNATGRARLLMRARGN--YRLILNASLYPDMKLTNMDKKGITFACIN 385 (437)
Q Consensus 308 nEevLFs~RAKLyrf~~~eWKERGvG~LKLlk~ke~t~k~RIVMRrDgt--lKVlLN~~I~~~Mkvt~~~kKsV~ftavn 385 (437)
+|++|+.+..--|+ ..+ |+|.|... ||.-+.+.. .-|++...=..++.+++.++--|++-.+-
T Consensus 5 ~~~~ll~v~~v~yK-------K~d-GtL~l~~d-------~i~W~p~~~~~~~vs~~~~~I~~qq~SP~~k~KVqLqi~l 69 (108)
T 1pfj_A 5 SEEVLLIVKKVRQK-------KQD-GALYLMAE-------RIAWAPEGKDRFTISHMYADIKCQKISPEGKAKIQLQLVL 69 (108)
T ss_dssp SCCEEEEESCCBCS-------SCB-CEEEEETT-------EEEEECSSSSSCSEEEETTTCCCEEECCSSSSSCEEEEEC
T ss_pred chheeEEehhheee-------cCC-ceEEEEcc-------eEEEccCCCCCceEEEehhhhhcceeCCCCCccEEEEEEE
Confidence 34666666444443 333 78877642 565444333 33555433334455556554445443332
Q ss_pred cCCCCCccceEEEEEeCCH----HHHHHHHHHHHHHHHhh
Q 013715 386 SATEGKSGLSTFALKFRDA----SIVEEFQTAVAAHKDKT 421 (437)
Q Consensus 386 d~sEgk~kl~tylLRFKta----E~AdeF~kaIeeaK~~~ 421 (437)
.. ..+|++-|-++ .+|+.+++.|.......
T Consensus 70 ~~------~~~~~F~Ftn~~~a~~erd~VKd~L~~~l~~~ 103 (108)
T 1pfj_A 70 HA------GDTTNFHFSNESTAVKERDAVKDLLQQLLPKF 103 (108)
T ss_dssp SS------SCEEEEECCCSSCTTHHHHHHHHHHHHHHHHH
T ss_pred eC------CCceEEEEcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 21 36899999876 46777777776665443
Done!