AmiGO: BLAST Results


BLAST match view associations BLAST with LIF2 LIF2 LIF2 AT4G00830	protein from Arabidopsis thaliana	3.4e-154
BLAST match view associations BLAST with AT3G52660 AT3G52660 AT3G52660	protein from Arabidopsis thaliana	5.7e-107
BLAST match view associations BLAST with HNRNPR HNRNPR HNRNPR HNRNPR protein	protein from Bos taurus	6.0e-46
BLAST match view associations BLAST with A1CF A1CF A1CF Uncharacterized protein	protein from Bos taurus	3.2e-43
BLAST match view associations BLAST with HNRNPR HNRNPR HNRNPR Uncharacterized protein	protein from Canis lupus familiaris	3.5e-43
BLAST match view associations BLAST with HNRNPR HNRNPR HNRNPR Heterogeneous nuclear ribonucleoprotein R	protein from Homo sapiens	3.5e-43
BLAST match view associations BLAST with HNRNPR HNRNPR HNRNPR Uncharacterized protein	protein from Sus scrofa	3.5e-43
BLAST match view associations BLAST with Hnrnpr Hnrnpr Hnrnpr heterogeneous nuclear ribonucleoprotein R	gene from Rattus norvegicus	3.5e-43
BLAST match view associations BLAST with Syp Syp Syp Syncrip	protein from Drosophila melanogaster	4.5e-43
BLAST match view associations BLAST with syncripl syncripl syncripl synaptotagmin binding, cytoplasmic RNA interacting protein, like	gene_product from Danio rerio	4.5e-43
BLAST match view associations BLAST with A1CF A1CF A1CF APOBEC1 complementation factor	protein from Homo sapiens	5.2e-43
BLAST match view associations BLAST with A1CF A1CF A1CF APOBEC1 complementation factor	protein from Homo sapiens	5.2e-43
BLAST match view associations BLAST with A1CF A1CF A1CF APOBEC1 complementation factor	protein from Pongo abelii	5.2e-43
BLAST match view associations BLAST with HNRNPR HNRNPR HNRNPR Uncharacterized protein	protein from Gallus gallus	5.9e-43
BLAST match view associations BLAST with A1CF A1CF A1CF Uncharacterized protein	protein from Sus scrofa	1.1e-42
BLAST match view associations BLAST with A1cf A1cf A1cf APOBEC1 complementation factor	gene from Rattus norvegicus	1.1e-42
BLAST match view associations BLAST with SYNCRIP SYNCRIP SYNCRIP Uncharacterized protein	protein from Bos taurus	1.2e-42
BLAST match view associations BLAST with SYNCRIP SYNCRIP SYNCRIP Uncharacterized protein	protein from Canis lupus familiaris	1.2e-42
BLAST match view associations BLAST with SYNCRIP SYNCRIP SYNCRIP Heterogeneous nuclear ribonucleoprotein Q	protein from Homo sapiens	1.2e-42
BLAST match view associations BLAST with SYNCRIP SYNCRIP SYNCRIP Uncharacterized protein	protein from Sus scrofa	1.2e-42
BLAST match view associations BLAST with SYNCRIP SYNCRIP SYNCRIP Uncharacterized protein	protein from Gallus gallus	1.5e-42
BLAST match view associations BLAST with Syncrip Syncrip Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein	protein from Mus musculus	1.5e-42
BLAST match view associations BLAST with Syncrip Syncrip Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein	gene from Rattus norvegicus	1.5e-42
BLAST match view associations BLAST with Syncrip Syncrip Syncrip Heterogeneous nuclear ribonucleoprotein Q	protein from Rattus norvegicus	1.5e-42
BLAST match view associations BLAST with A1cf A1cf A1cf APOBEC1 complementation factor	protein from Mus musculus	2.2e-42
BLAST match view associations BLAST with HNRNPR HNRNPR HNRNPR Heterogeneous nuclear ribonucleoprotein R	protein from Homo sapiens	8.4e-42
BLAST match view associations BLAST with hrp-2 hrp-2 hrp-2	gene from Caenorhabditis elegans	1.2e-41
BLAST match view associations BLAST with syncrip syncrip syncrip synaptotagmin binding, cytoplasmic RNA interacting protein	gene_product from Danio rerio	6.5e-41
BLAST match view associations BLAST with rnpA rnpA rnpA putative RNA binding protein	gene from Dictyostelium discoideum	8.1e-41
BLAST match view associations BLAST with A1CF A1CF A1CF Uncharacterized protein	protein from Canis lupus familiaris	2.9e-39
BLAST match view associations BLAST with si:ch211-241e15.2 si:ch211-241e15.2 si:ch211-241e15.2	gene_product from Danio rerio	6.4e-39
BLAST match view associations BLAST with A1CF A1CF A1CF Uncharacterized protein	protein from Gallus gallus	1.3e-38
BLAST match view associations BLAST with a1cf a1cf a1cf apobec1 complementation factor	gene_product from Danio rerio	3.4e-38
BLAST match view associations BLAST with RBM46 RBM46 RBM46 Uncharacterized protein	protein from Bos taurus	1.9e-37
BLAST match view associations BLAST with RBM46 RBM46 RBM46 Uncharacterized protein	protein from Canis lupus familiaris	2.4e-37
BLAST match view associations BLAST with RBM46 RBM46 RBM46 Uncharacterized protein	protein from Canis lupus familiaris	2.4e-37
BLAST match view associations BLAST with MGC27016 MGC27016 MGC27016 Putative uncharacterized protein MGC27016	protein from Homo sapiens	2.4e-37
BLAST match view associations BLAST with RBM46 RBM46 RBM46 Probable RNA-binding protein 46	protein from Homo sapiens	2.4e-37
BLAST match view associations BLAST with RBM46 RBM46 RBM46 Probable RNA-binding protein 46	protein from Homo sapiens	2.4e-37
BLAST match view associations BLAST with RBM46 RBM46 RBM46 Uncharacterized protein	protein from Sus scrofa	2.4e-37
BLAST match view associations BLAST with Rbm46 Rbm46 Rbm46 RNA binding motif protein 46	protein from Mus musculus	2.4e-37
BLAST match view associations BLAST with Rbm46 Rbm46 Rbm46 RNA binding motif protein 46	gene from Rattus norvegicus	2.4e-37
BLAST match view associations BLAST with RBM47 RBM47 RBM47 Uncharacterized protein	protein from Gallus gallus	2.9e-37
BLAST match view associations BLAST with SYNCRIP SYNCRIP SYNCRIP Uncharacterized protein	protein from Canis lupus familiaris	7.2e-37
BLAST match view associations BLAST with rbm46 rbm46 rbm46 RNA binding motif protein 46	gene_product from Danio rerio	1.0e-36
BLAST match view associations BLAST with RBM47 RBM47 RBM47 RNA-binding protein 47	protein from Canis lupus familiaris	1.7e-36
BLAST match view associations BLAST with RBM47 RBM47 RBM47 RNA-binding protein 47	protein from Canis lupus familiaris	1.7e-36
BLAST match view associations BLAST with RBM46 RBM46 RBM46 Uncharacterized protein	protein from Gallus gallus	3.5e-36
BLAST match view associations BLAST with RBM47 RBM47 RBM47 Uncharacterized protein	protein from Bos taurus	4.9e-36
BLAST match view associations BLAST with RBM47 RBM47 RBM47 Uncharacterized protein	protein from Sus scrofa	4.9e-36
BLAST match view associations BLAST with AT5G28390 AT5G28390 AT5G28390	protein from Arabidopsis thaliana	5.7e-36
BLAST match view associations BLAST with RBM47 RBM47 RBM47 cDNA FLJ51456, moderately similar to APOBEC1 complementation factor	protein from Homo sapiens	7.2e-36
BLAST match view associations BLAST with RBM47 RBM47 RBM47 RNA-binding protein 47	protein from Homo sapiens	7.2e-36
BLAST match view associations BLAST with Rbm47 Rbm47 Rbm47 RNA binding motif protein 47	protein from Mus musculus	1.1e-35
BLAST match view associations BLAST with Rbm47 Rbm47 Rbm47 RNA binding motif protein 47	gene from Rattus norvegicus	1.4e-35
BLAST match view associations BLAST with RBM47 RBM47 RBM47 RNA-binding protein 47	protein from Homo sapiens	1.5e-35
BLAST match view associations BLAST with AT2G44710 AT2G44710 AT2G44710	protein from Arabidopsis thaliana	2.2e-33
BLAST match view associations BLAST with RBM46 RBM46 RBM46 Uncharacterized protein	protein from Gallus gallus	6.9e-31
BLAST match view associations BLAST with HNRNPR HNRNPR HNRNPR Heterogeneous nuclear ribonucleoprotein R	protein from Homo sapiens	2.4e-28
BLAST match view associations BLAST with A1CF A1CF A1CF APOBEC1 complementation factor	protein from Homo sapiens	1.8e-23
BLAST match view associations BLAST with RBM47 RBM47 RBM47 RNA-binding protein 47	protein from Homo sapiens	8.9e-21
BLAST match view associations BLAST with DDB_G0291486 DDB_G0291486 DDB_G0291486 putative splicing regulator	gene from Dictyostelium discoideum	2.8e-20
BLAST match view associations BLAST with orf19.3037 orf19.3037 orf19.3037	gene_product from Candida albicans	3.1e-20
BLAST match view associations BLAST with pabpc4 pabpc4 pabpc4 poly(A) binding protein, cytoplasmic 4 (inducible form)	gene_product from Danio rerio	5.6e-20
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Poly(A) binding protein, cytoplasmic 4 (Inducible form), isoform CRA_e	protein from Homo sapiens	1.1e-19
BLAST match view associations BLAST with PABPC4L PABPC4L PABPC4L Polyadenylate-binding protein 4-like	protein from Homo sapiens	1.1e-19
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Sus scrofa	1.3e-19
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Canis lupus familiaris	1.3e-19
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 PABPC4 protein	protein from Bos taurus	1.8e-19
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Gallus gallus	2.2e-19
BLAST match view associations BLAST with PABPC4L PABPC4L PABPC4L Polyadenylate-binding protein 4-like	protein from Homo sapiens	2.2e-19
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Polyadenylate-binding protein 4	protein from Homo sapiens	2.3e-19
BLAST match view associations BLAST with LOC100737174 LOC100737174 LOC100737174 Uncharacterized protein	protein from Sus scrofa	2.7e-19
BLAST match view associations BLAST with PAB1 PAB1 PAB1 Poly(A) binding protein	gene from Saccharomyces cerevisiae	3.1e-19
BLAST match view associations BLAST with LOC100737210 LOC100737210 LOC100737210 Uncharacterized protein	protein from Sus scrofa	3.7e-19
BLAST match view associations BLAST with AT4G36960 AT4G36960 AT4G36960	protein from Arabidopsis thaliana	1.3e-18
BLAST match view associations BLAST with NCL NCL NCL Nucleolin	protein from Gallus gallus	1.3e-18
BLAST match view associations BLAST with NCL NCL NCL Nucleolin	protein from Gallus gallus	1.3e-18
BLAST match view associations BLAST with E9PTI5 E9PTI5 E9PTI5 Uncharacterized protein	protein from Rattus norvegicus	1.4e-18
BLAST match view associations BLAST with NCL NCL NCL Uncharacterized protein	protein from Canis lupus familiaris	2.5e-18
BLAST match view associations BLAST with NCL NCL NCL Nucleolin	protein from Macaca fascicularis	2.5e-18
BLAST match view associations BLAST with Pabpc6 Pabpc6 Pabpc6 poly(A) binding protein, cytoplasmic 6	gene from Rattus norvegicus	2.5e-18
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Uncharacterized protein	protein from Sus scrofa	2.8e-18
BLAST match view associations BLAST with NCL NCL NCL Uncharacterized protein	protein from Bos taurus	3.3e-18
BLAST match view associations BLAST with Pabpc4l Pabpc4l Pabpc4l poly(A) binding protein, cytoplasmic 4-like	gene from Rattus norvegicus	3.4e-18
BLAST match view associations BLAST with Ncl Ncl Ncl nucleolin	gene from Rattus norvegicus	3.6e-18
BLAST match view associations BLAST with Ncl Ncl Ncl Nucleolin	protein from Rattus norvegicus	3.6e-18
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Polyadenylate-binding protein 1	protein from Pongo abelii	4.5e-18
BLAST match view associations BLAST with Pabpc1 Pabpc1 Pabpc1 poly(A) binding protein, cytoplasmic 1	protein from Mus musculus	6.0e-18
BLAST match view associations BLAST with Pabpc1 Pabpc1 Pabpc1 poly(A) binding protein, cytoplasmic 1	gene from Rattus norvegicus	6.0e-18
BLAST match view associations BLAST with NCL NCL NCL Nucleolin	protein from Homo sapiens	6.6e-18
BLAST match view associations BLAST with NCL NCL NCL Nucleolin	protein from Gallus gallus	7.4e-18
BLAST match view associations BLAST with PAB2 PAB2 PAB2 AT4G34110	protein from Arabidopsis thaliana	9.9e-18
BLAST match view associations BLAST with NCL NCL NCL Nucleolin	protein from Pongo abelii	1.1e-17
BLAST match view associations BLAST with PABPC3 PABPC3 PABPC3 Polyadenylate-binding protein 3	protein from Homo sapiens	1.1e-17
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  013716
        (437 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2134638 - symbol:LIF2 "LHP1-Interacting Factor...  1484  3.4e-154  2
TAIR|locus:2083248 - symbol:AT3G52660 species:3702 "Arabi...  1038  5.7e-107  2
UNIPROTKB|A3KMV6 - symbol:HNRNPR "Uncharacterized protein...   456  6.0e-46   2
UNIPROTKB|E1B7G9 - symbol:A1CF "Uncharacterized protein" ...   425  3.2e-43   2
UNIPROTKB|E2RE36 - symbol:HNRNPR "Uncharacterized protein...   456  3.5e-43   1
UNIPROTKB|O43390 - symbol:HNRNPR "Heterogeneous nuclear r...   456  3.5e-43   1
UNIPROTKB|I3LKZ4 - symbol:HNRNPR "Uncharacterized protein...   456  3.5e-43   1
RGD|631348 - symbol:Hnrnpr "heterogeneous nuclear ribonuc...   456  3.5e-43   1
UNIPROTKB|Q566E4 - symbol:Hnrnpr "Heterogeneous nuclear r...   456  3.5e-43   1
FB|FBgn0038826 - symbol:Syp "Syncrip" species:7227 "Droso...   459  4.5e-43   1
ZFIN|ZDB-GENE-030131-3104 - symbol:syncripl "synaptotagmi...   455  4.5e-43   1
UNIPROTKB|F8W9F8 - symbol:A1CF "APOBEC1 complementation f...   424  5.2e-43   2
UNIPROTKB|Q9NQ94 - symbol:A1CF "APOBEC1 complementation f...   424  5.2e-43   2
UNIPROTKB|Q5R9H4 - symbol:A1CF "APOBEC1 complementation f...   424  5.2e-43   2
UNIPROTKB|E1BZR1 - symbol:HNRNPR "Uncharacterized protein...   455  5.9e-43   1
UNIPROTKB|F1SD00 - symbol:A1CF "Uncharacterized protein" ...   420  1.1e-42   2
RGD|619834 - symbol:A1cf "APOBEC1 complementation factor"...   417  1.1e-42   2
UNIPROTKB|F1LNL0 - symbol:A1cf "APOBEC1 complementation f...   417  1.1e-42   2
UNIPROTKB|F1MCT8 - symbol:SYNCRIP "Uncharacterized protei...   451  1.2e-42   1
UNIPROTKB|F6XIK8 - symbol:SYNCRIP "Uncharacterized protei...   451  1.2e-42   1
UNIPROTKB|O60506 - symbol:SYNCRIP "Heterogeneous nuclear ...   451  1.2e-42   1
UNIPROTKB|F2Z5D4 - symbol:SYNCRIP "Uncharacterized protei...   451  1.2e-42   1
UNIPROTKB|F1NWI9 - symbol:SYNCRIP "Uncharacterized protei...   450  1.5e-42   1
MGI|MGI:1891690 - symbol:Syncrip "synaptotagmin binding, ...   450  1.5e-42   1
RGD|1305683 - symbol:Syncrip "synaptotagmin binding, cyto...   450  1.5e-42   1
UNIPROTKB|Q7TP47 - symbol:Syncrip "Heterogeneous nuclear ...   450  1.5e-42   1
MGI|MGI:1917115 - symbol:A1cf "APOBEC1 complementation fa...   417  2.2e-42   2
UNIPROTKB|F1LUZ6 - symbol:Hnrnpr "Protein Hnrnpr" species...   448  2.5e-42   1
UNIPROTKB|Q2L7G6 - symbol:HNRNPR "Heterogeneous nuclear r...   443  8.4e-42   1
WB|WBGene00002000 - symbol:hrp-2 species:6239 "Caenorhabd...   405  1.2e-41   2
ZFIN|ZDB-GENE-030131-4862 - symbol:syncrip "synaptotagmin...   439  6.5e-41   1
DICTYBASE|DDB_G0282293 - symbol:rnpA "putative RNA bindin...   379  8.1e-41   2
UNIPROTKB|E2QWK5 - symbol:A1CF "Uncharacterized protein" ...   419  2.9e-39   1
ZFIN|ZDB-GENE-030131-9612 - symbol:si:ch211-241e15.2 "si:...   398  6.4e-39   2
UNIPROTKB|E1BQR8 - symbol:A1CF "Uncharacterized protein" ...   413  1.3e-38   1
ZFIN|ZDB-GENE-060824-3 - symbol:a1cf "apobec1 complementa...   409  3.4e-38   1
UNIPROTKB|E1BB24 - symbol:RBM46 "Uncharacterized protein"...   402  1.9e-37   1
UNIPROTKB|E2R8F4 - symbol:RBM46 "Uncharacterized protein"...   401  2.4e-37   1
UNIPROTKB|E2RTF9 - symbol:RBM46 "Uncharacterized protein"...   401  2.4e-37   1
UNIPROTKB|B3KWU8 - symbol:RBM46 "Putative uncharacterized...   401  2.4e-37   1
UNIPROTKB|B4DZ27 - symbol:RBM46 "Probable RNA-binding pro...   401  2.4e-37   1
UNIPROTKB|Q8TBY0 - symbol:RBM46 "Probable RNA-binding pro...   401  2.4e-37   1
UNIPROTKB|F1RYR7 - symbol:RBM46 "Uncharacterized protein"...   401  2.4e-37   1
MGI|MGI:3645057 - symbol:Rbm46 "RNA binding motif protein...   401  2.4e-37   1
RGD|1560205 - symbol:Rbm46 "RNA binding motif protein 46"...   401  2.4e-37   1
UNIPROTKB|E1BVJ9 - symbol:RBM47 "Uncharacterized protein"...   402  2.9e-37   1
UNIPROTKB|E2QVD3 - symbol:SYNCRIP "Uncharacterized protei...   400  7.2e-37   1
ZFIN|ZDB-GENE-061013-298 - symbol:rbm46 "RNA binding moti...   395  1.0e-36   1
UNIPROTKB|F1Q212 - symbol:RBM47 "RNA-binding protein 47" ...   395  1.7e-36   1
UNIPROTKB|Q9XSR3 - symbol:RBM47 "RNA-binding protein 47" ...   395  1.7e-36   1
UNIPROTKB|E1BV69 - symbol:RBM46 "Uncharacterized protein"...   390  3.5e-36   1
UNIPROTKB|F6RYN2 - symbol:RBM47 "Uncharacterized protein"...   391  4.9e-36   1
UNIPROTKB|F1S4H0 - symbol:RBM47 "Uncharacterized protein"...   391  4.9e-36   1
TAIR|locus:2146564 - symbol:AT5G28390 species:3702 "Arabi...   313  5.7e-36   2
UNIPROTKB|B7Z8Z7 - symbol:RBM47 "cDNA FLJ51456, moderatel...   387  7.2e-36   1
UNIPROTKB|D6R9D6 - symbol:RBM47 "RNA-binding protein 47" ...   387  7.2e-36   1
MGI|MGI:2384294 - symbol:Rbm47 "RNA binding motif protein...   388  1.1e-35   1
RGD|1359713 - symbol:Rbm47 "RNA binding motif protein 47"...   387  1.4e-35   1
UNIPROTKB|A0AV96 - symbol:RBM47 "RNA-binding protein 47" ...   387  1.5e-35   1
TAIR|locus:2042366 - symbol:AT2G44710 species:3702 "Arabi...   358  2.2e-33   2
UNIPROTKB|F1NJQ8 - symbol:RBM46 "Uncharacterized protein"...   340  6.9e-31   1
UNIPROTKB|F1LM17 - symbol:F1LM17 "Uncharacterized protein...   303  2.9e-29   2
UNIPROTKB|E7ETM7 - symbol:HNRNPR "Heterogeneous nuclear r...   317  2.4e-28   1
UNIPROTKB|Q5T0W7 - symbol:A1CF "APOBEC1 complementation f...   270  1.8e-23   1
UNIPROTKB|D6RBS9 - symbol:RBM47 "RNA-binding protein 47" ...   247  8.9e-21   1
DICTYBASE|DDB_G0291486 - symbol:DDB_G0291486 "putative sp...   212  2.8e-20   2
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ...   263  3.1e-20   1
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin...   258  5.6e-20   2
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p...   256  1.1e-19   2
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ...   254  1.1e-19   1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein...   258  1.3e-19   1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein...   258  1.3e-19   1
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein...   257  1.8e-19   1
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein...   256  2.2e-19   1
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ...   248  2.2e-19   1
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p...   256  2.3e-19   1
UNIPROTKB|F1SMV6 - symbol:LOC100737174 "Uncharacterized p...   247  2.7e-19   1
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp...   254  3.1e-19   1
UNIPROTKB|I3LRH2 - symbol:LOC100737210 "Uncharacterized p...   247  3.7e-19   2
TAIR|locus:2115169 - symbol:AT4G36960 species:3702 "Arabi...   177  1.3e-18   2
UNIPROTKB|F1P336 - symbol:NCL "Nucleolin" species:9031 "G...   236  1.3e-18   2
UNIPROTKB|F1NU40 - symbol:NCL "Nucleolin" species:9031 "G...   236  1.3e-18   2
UNIPROTKB|E9PTI5 - symbol:E9PTI5 "Uncharacterized protein...   239  1.4e-18   2
UNIPROTKB|F1Q0B0 - symbol:NCL "Uncharacterized protein" s...   241  2.5e-18   2
UNIPROTKB|Q4R4J7 - symbol:NCL "Nucleolin" species:9541 "M...   240  2.5e-18   2
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt...   244  2.5e-18   2
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein...   241  2.8e-18   2
UNIPROTKB|E1B8K6 - symbol:NCL "Uncharacterized protein" s...   235  3.3e-18   2
RGD|1559517 - symbol:Pabpc4l "poly(A) binding protein, cy...   239  3.4e-18   1
RGD|3153 - symbol:Ncl "nucleolin" species:10116 "Rattus n...   243  3.6e-18   2
UNIPROTKB|Q5U328 - symbol:Ncl "Nucleolin, isoform CRA_c" ...   243  3.6e-18   2
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p...   245  4.5e-18   1
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,...   244  6.0e-18   1
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto...   244  6.0e-18   1
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric...   238  6.4e-18   2
UNIPROTKB|P19338 - symbol:NCL "Nucleolin" species:9606 "H...   240  6.6e-18   2
UNIPROTKB|P15771 - symbol:NCL "Nucleolin" species:9031 "G...   230  7.4e-18   2
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702...   242  9.9e-18   1
UNIPROTKB|Q5RF26 - symbol:NCL "Nucleolin" species:9601 "P...   240  1.1e-17   2
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p...   233  1.1e-17   1

WARNING:  Descriptions of 1328 database sequences were not reported due to the
          limiting value of parameter V = 100.


>TAIR|locus:2134638 [details] [associations]
            symbol:LIF2 "LHP1-Interacting Factor 2" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
            [GO:0010048 "vernalization response" evidence=RCA] [GO:0016558
            "protein import into peroxisome matrix" evidence=RCA] [GO:0048573
            "photoperiodism, flowering" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 KO:K13161 UniGene:At.24279
            HSSP:Q9Y5S9 EMBL:AF367357 EMBL:AY113171 EMBL:AK227578
            IPI:IPI00532730 RefSeq:NP_001031566.1 RefSeq:NP_567192.1
            ProteinModelPortal:Q9ASP6 SMR:Q9ASP6 PRIDE:Q9ASP6
            EnsemblPlants:AT4G00830.1 EnsemblPlants:AT4G00830.2 GeneID:827998
            KEGG:ath:AT4G00830 TAIR:At4g00830 HOGENOM:HOG000243749
            InParanoid:Q9ASP6 PhylomeDB:Q9ASP6 ProtClustDB:CLSN2698006
            Genevestigator:Q9ASP6 Uniprot:Q9ASP6
        Length = 495

 Score = 1484 (527.5 bits), Expect = 3.4e-154, Sum P(2) = 3.4e-154
 Identities = 270/387 (69%), Positives = 334/387 (86%)

Query:    55 SKAGASE--KDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIG 112
             +K G  E  +++ AE + N  D    +++EKP + + +++++K++ LL+LPP+GSEVFIG
Sbjct:    62 TKGGDMEDVQEEIAEDDDNHIDIETADDDEKPPSPIDDEDREKYSHLLSLPPHGSEVFIG 121

Query:   113 GLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172
             GLP+D  EEDLRDLCE IG++FEVRLMKD++SG+SKG+AFV+F++K+ A+KAI+ELHSKE
Sbjct:   122 GLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEELHSKE 181

Query:   173 LKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGF 232
              KGKTIRCSLSETKNRLFIGN+PKNWTEDEFRKVIEDVGPGVE IELIKDP N +RNRGF
Sbjct:   182 FKGKTIRCSLSETKNRLFIGNIPKNWTEDEFRKVIEDVGPGVENIELIKDPTNTTRNRGF 241

Query:   233 SFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPD 292
             +FVLYYNNACADYSRQKM+++NFKL+GN PT++WADPKS+P+HSAAA+QVKALYVKNIP+
Sbjct:   242 AFVLYYNNACADYSRQKMIDSNFKLEGNAPTVTWADPKSSPEHSAAAAQVKALYVKNIPE 301

Query:   293 NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVL 352
             NTSTE++KELFQRHGEVTK+V PPGK GKRDFGF+HYAERSSALKAVKDTE+YE++GQ L
Sbjct:   302 NTSTEQLKELFQRHGEVTKIVTPPGKGGKRDFGFVHYAERSSALKAVKDTERYEVNGQPL 361

Query:   353 EVVLAKPQTDKKTEGTFPYSPGLVPTHLP--HAGYGGFAGTPYGSVGTGFGVAAGFQQPM 410
             EVVLAKPQ ++K + +  YS G  PT  P  H  +GGFA  PYG++G G G+A  F QPM
Sbjct:   362 EVVLAKPQAERKHDPS-SYSYGAAPTPAPFVHPTFGGFAAAPYGAMGAGLGIAGSFSQPM 420

Query:   411 IYGRGPMPSGMHMVPMVLPDGQIGYVL 437
             IYGRG MP+GM MVPM+LPDG++GYVL
Sbjct:   421 IYGRGAMPTGMQMVPMLLPDGRVGYVL 447

 Score = 41 (19.5 bits), Expect = 3.4e-154, Sum P(2) = 3.4e-154
 Identities = 8/30 (26%), Positives = 15/30 (50%)

Query:    61 EKDQSAEANRNDDDTPHVEEEEKPTASVGE 90
             E ++  E + +DDD  +   EE+     G+
Sbjct:    32 EYEEEEEEDDDDDDVGNQNAEEREVEDYGD 61


>TAIR|locus:2083248 [details] [associations]
            symbol:AT3G52660 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0000166 eggNOG:NOG258596
            Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 EMBL:AL353912
            KO:K13161 HOGENOM:HOG000243749 ProtClustDB:CLSN2698006
            EMBL:BT029158 EMBL:AK176325 EMBL:AK176862 IPI:IPI00534328
            PIR:T49019 RefSeq:NP_001030849.1 RefSeq:NP_190834.1
            UniGene:At.48763 ProteinModelPortal:Q9LXJ8 SMR:Q9LXJ8 PaxDb:Q9LXJ8
            PRIDE:Q9LXJ8 EnsemblPlants:AT3G52660.1 EnsemblPlants:AT3G52660.2
            GeneID:824432 KEGG:ath:AT3G52660 TAIR:At3g52660 InParanoid:Q9LXJ8
            OMA:HDSMESE PhylomeDB:Q9LXJ8 ArrayExpress:Q9LXJ8
            Genevestigator:Q9LXJ8 Uniprot:Q9LXJ8
        Length = 471

 Score = 1038 (370.5 bits), Expect = 5.7e-107, Sum P(2) = 5.7e-107
 Identities = 193/385 (50%), Positives = 281/385 (72%)

Query:    61 EKDQSAEANRNDDDTPHVEEEEKPTASVG---EDEKDKHAQLLALPPNGSEVFIGGLPKD 117
             E+++  E     ++   VEEEE+   +V    E+EK +H +LLALPP+GSEV++GG+P D
Sbjct:    43 EEEEIEEIEEEIEEEVEVEEEEEEEDAVATEEEEEKKRHVELLALPPHGSEVYLGGIPTD 102

Query:   118 ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177
             A+E DL+  C  IG+V EVR+M++K+SG+ KG+AFV+FRSK+ A +AID L++ + +GK 
Sbjct:   103 ATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTLNNTDFRGKR 162

Query:   178 IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
             I+CS ++ K+RLF+GNVP+NW E + +K    +GPGV+ +EL K+PQN  RNRGF+F+ Y
Sbjct:   163 IKCSTTQAKHRLFLGNVPRNWMESDIKKAANRIGPGVQIVELPKEPQNMGRNRGFAFIEY 222

Query:   238 YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTE 297
             YN+ACA+YS+QKM N +FKLD N PT+SWA+ +S     ++ASQVKALY+KN+P + + E
Sbjct:   223 YNHACAEYSKQKMSNPSFKLDDNAPTVSWAESRSGGGGDSSASQVKALYIKNLPRDITQE 282

Query:   298 KIKELFQRHGEVTKVVMPPGKSGKRD--FGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355
             ++K LF+ HG++ KVV+PP K GK D  +GF+HYAER+S ++A+K+TE+YEIDG +L+  
Sbjct:   283 RLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEIDGHMLDCT 342

Query:   356 LAKPQTDKKTE-GTFP--YSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIY 412
             LAKPQ D+KT   T        L P + P   YG  A +P+G++G GFG +A + QP+++
Sbjct:   343 LAKPQADQKTNTNTVQNVQKSQLQPNYPPLLSYG-MAPSPFGALG-GFGASA-YSQPLMH 399

Query:   413 GRGPMPSGMHMVPMVLPDGQIGYVL 437
               G    GM M+P++LPDG+IGYVL
Sbjct:   400 AGGHAAGGMSMMPIMLPDGRIGYVL 424

 Score = 40 (19.1 bits), Expect = 5.7e-107, Sum P(2) = 5.7e-107
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query:    55 SKAGASEKDQSAEANRN-----DDDTPHVEEEEKPTASVGEDE 92
             ++  ASE   S E+        D+D   + EEE     V E+E
Sbjct:     4 TRTAASEAHDSMESEERVDLDGDNDPEEILEEEVEYEEVEEEE 46


>UNIPROTKB|A3KMV6 [details] [associations]
            symbol:HNRNPR "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
            Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
            GeneTree:ENSGT00550000074366 GO:GO:0003676 GO:GO:0071013
            OrthoDB:EOG4FN4HM HOGENOM:HOG000186082 CTD:10236 KO:K13161
            OMA:YYPPPRM EMBL:DAAA02006438 EMBL:BC133299 IPI:IPI00704335
            RefSeq:NP_001076077.1 UniGene:Bt.3687 SMR:A3KMV6 STRING:A3KMV6
            Ensembl:ENSBTAT00000022054 GeneID:512479 KEGG:bta:512479
            InParanoid:A3KMV6 NextBio:20870409 Uniprot:A3KMV6
        Length = 633

 Score = 456 (165.6 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
 Identities = 93/265 (35%), Positives = 161/265 (60%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G+EVF+G +P+D  E++L  L E  G ++++RLM D  SG+++G+AF++F  KE A+
Sbjct:   161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             +A+    S E++ GK +   +S   NRLF+G++PKN T++   +    V  G+  + L  
Sbjct:   221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
              P +  +NRGF F+ Y ++  A  +R+++++   K+ GN  T+ WADP   PD    A +
Sbjct:   281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
             VK L+V+N+    + E +++ F   G++ +V     K  K D+ F+H+ +R +A+KA+ +
Sbjct:   340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV-----KKLK-DYAFVHFEDRGAAVKAMDE 393

Query:   342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
                 EI+G+ +E+VLAKP   K+ E
Sbjct:   394 MNGKEIEGEEIEIVLAKPPDKKRKE 418

 Score = 43 (20.2 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
 Identities = 14/43 (32%), Positives = 22/43 (51%)

Query:    68 ANRNDDDTPHVEEEEKP--TASVGEDEKDKHAQLLALPPNGSE 108
             AN+ + +   ++EEE+P  T+SV   E  K      LP   +E
Sbjct:     2 ANQVNGNAVQLKEEEEPMDTSSVNHTEHYKTLIEAGLPQKVAE 44


>UNIPROTKB|E1B7G9 [details] [associations]
            symbol:A1CF "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0050821 "protein stabilization" evidence=IEA]
            [GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
            "single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
            GO:GO:0050821 GO:GO:0000166 CTD:29974 OMA:PGYAVPN GO:GO:0030895
            GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
            InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
            EMBL:DAAA02058697 EMBL:DAAA02058698 IPI:IPI01002256
            RefSeq:XP_003587913.1 ProteinModelPortal:E1B7G9
            Ensembl:ENSBTAT00000033157 GeneID:100336715 KEGG:bta:100336715
            Uniprot:E1B7G9
        Length = 595

 Score = 425 (154.7 bits), Expect = 3.2e-43, Sum P(2) = 3.2e-43
 Identities = 109/316 (34%), Positives = 169/316 (53%)

Query:   101 ALPPN-GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
             A PP  G E+FIG LP+D  E++L  LCE IG ++E+R+M D  +G ++G+AFV+F +K+
Sbjct:    49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKQ 107

Query:   160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
              AK AI +L++ E++ G+ +    S    RLF+G +PK    +E    ++ V  GV  + 
Sbjct:   108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167

Query:   219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
             +     + ++NRGF+FV Y N+  A  +R+K+L    +L G+   + WA+P+   D    
Sbjct:   168 VYPSAADKTKNRGFAFVEYENHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227

Query:   279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
             +S VK LYV+N+  +TS E I++ F   + G V +V         RD+ F+H+  R  A+
Sbjct:   228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFTNREDAV 280

Query:   337 KAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSV 396
             +A+K      +DG  +EV LAKP  DK +   +    G     L    Y    G  Y   
Sbjct:   281 EAMKALNGKVLDGSPIEVTLAKP-VDKDSYVRYTRGTGGRGAML-QGEYTYSLGHVYDPT 338

Query:   397 GTGFGVAAGFQQPMIY 412
              T  G A  F  P  Y
Sbjct:   339 TTYLG-APVFYAPQAY 353

 Score = 48 (22.0 bits), Expect = 3.2e-43, Sum P(2) = 3.2e-43
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPM 426
             G GG     Y  +G G+ V    ++  +Y   P   GM + PM
Sbjct:   395 GLGGRGYLAYTGLGRGYQVKGDKREDKLYDLLP---GMELTPM 434


>UNIPROTKB|E2RE36 [details] [associations]
            symbol:HNRNPR "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
            GO:GO:0071013 CTD:10236 KO:K13161 OMA:YYPPPRM EMBL:AAEX03001757
            RefSeq:XP_852945.1 ProteinModelPortal:E2RE36
            Ensembl:ENSCAFT00000021145 GeneID:478192 KEGG:cfa:478192
            Uniprot:E2RE36
        Length = 633

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 93/265 (35%), Positives = 161/265 (60%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G+EVF+G +P+D  E++L  L E  G ++++RLM D  SG+++G+AF++F  KE A+
Sbjct:   161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             +A+    S E++ GK +   +S   NRLF+G++PKN T++   +    V  G+  + L  
Sbjct:   221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
              P +  +NRGF F+ Y ++  A  +R+++++   K+ GN  T+ WADP   PD    A +
Sbjct:   281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
             VK L+V+N+    + E +++ F   G++ +V     K  K D+ F+H+ +R +A+KA+ +
Sbjct:   340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV-----KKLK-DYAFVHFEDRGAAVKAMDE 393

Query:   342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
                 EI+G+ +E+VLAKP   K+ E
Sbjct:   394 MNGKEIEGEEIEIVLAKPPDKKRKE 418


>UNIPROTKB|O43390 [details] [associations]
            symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IDA] [GO:0071013 "catalytic
            step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=IC;TAS] [GO:0005654 "nucleoplasm"
            evidence=IDA;TAS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0003723
            "RNA binding" evidence=NAS] [GO:0005681 "spliceosomal complex"
            evidence=NAS] [GO:0006397 "mRNA processing" evidence=NAS]
            [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
            expression" evidence=TAS] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] Reactome:REACT_71
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
            eggNOG:NOG258596 HOVERGEN:HBG051917 Reactome:REACT_1675
            Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
            GO:GO:0003723 GO:GO:0000398 GO:GO:0071013 HOGENOM:HOG000186082
            EMBL:AF000364 EMBL:AL109936 EMBL:BC001449 IPI:IPI00012074
            IPI:IPI00941649 PIR:T02673 RefSeq:NP_001095867.1
            RefSeq:NP_001095868.1 RefSeq:NP_005817.1 UniGene:Hs.373763 PDB:2DK2
            PDBsum:2DK2 ProteinModelPortal:O43390 SMR:O43390 IntAct:O43390
            MINT:MINT-2796101 STRING:O43390 PhosphoSite:O43390 PaxDb:O43390
            PeptideAtlas:O43390 PRIDE:O43390 DNASU:10236
            Ensembl:ENST00000302271 Ensembl:ENST00000374612
            Ensembl:ENST00000374616 GeneID:10236 KEGG:hsa:10236 UCSC:uc001bgp.4
            UCSC:uc001bgr.4 CTD:10236 GeneCards:GC01M023630 HGNC:HGNC:5047
            HPA:CAB011687 HPA:HPA026092 MIM:607201 neXtProt:NX_O43390
            PharmGKB:PA162391459 KO:K13161 OMA:YYPPPRM PhylomeDB:O43390
            ChiTaRS:HNRNPR EvolutionaryTrace:O43390 GenomeRNAi:10236
            NextBio:38770 PMAP-CutDB:O43390 ArrayExpress:O43390 Bgee:O43390
            CleanEx:HS_HNRNPR Genevestigator:O43390 GermOnline:ENSG00000125944
            Uniprot:O43390
        Length = 633

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 93/265 (35%), Positives = 161/265 (60%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G+EVF+G +P+D  E++L  L E  G ++++RLM D  SG+++G+AF++F  KE A+
Sbjct:   161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             +A+    S E++ GK +   +S   NRLF+G++PKN T++   +    V  G+  + L  
Sbjct:   221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
              P +  +NRGF F+ Y ++  A  +R+++++   K+ GN  T+ WADP   PD    A +
Sbjct:   281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
             VK L+V+N+    + E +++ F   G++ +V     K  K D+ F+H+ +R +A+KA+ +
Sbjct:   340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV-----KKLK-DYAFVHFEDRGAAVKAMDE 393

Query:   342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
                 EI+G+ +E+VLAKP   K+ E
Sbjct:   394 MNGKEIEGEEIEIVLAKPPDKKRKE 418


>UNIPROTKB|I3LKZ4 [details] [associations]
            symbol:HNRNPR "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
            OMA:YYPPPRM Ensembl:ENSSSCT00000026418 Uniprot:I3LKZ4
        Length = 599

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 93/265 (35%), Positives = 161/265 (60%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G+EVF+G +P+D  E++L  L E  G ++++RLM D  SG+++G+AF++F  KE A+
Sbjct:   161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             +A+    S E++ GK +   +S   NRLF+G++PKN T++   +    V  G+  + L  
Sbjct:   221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
              P +  +NRGF F+ Y ++  A  +R+++++   K+ GN  T+ WADP   PD    A +
Sbjct:   281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
             VK L+V+N+    + E +++ F   G++ +V     K  K D+ F+H+ +R +A+KA+ +
Sbjct:   340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV-----KKLK-DYAFVHFEDRGAAVKAMDE 393

Query:   342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
                 EI+G+ +E+VLAKP   K+ E
Sbjct:   394 MNGKEIEGEEIEIVLAKPPDKKRKE 418


>RGD|631348 [details] [associations]
            symbol:Hnrnpr "heterogeneous nuclear ribonucleoprotein R"
            species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0030529
            "ribonucleoprotein complex" evidence=ISO] [GO:0071013 "catalytic
            step 2 spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:631348 GO:GO:0000166
            HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0030529 HSSP:O08583
            IPI:IPI00194562 UniGene:Rn.195396 EMBL:AY184814
            ProteinModelPortal:Q811S1 SMR:Q811S1 STRING:Q811S1 PRIDE:Q811S1
            UCSC:RGD:631348 InParanoid:Q811S1 Genevestigator:Q811S1
            Uniprot:Q811S1
        Length = 632

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 93/265 (35%), Positives = 161/265 (60%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G+EVF+G +P+D  E++L  L E  G ++++RLM D  SG+++G+AF++F  KE A+
Sbjct:   161 PGIGTEVFVGKIPRDLYEDELVPLFEEAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             +A+    S E++ GK +   +S   NRLF+G++PKN T++   +    V  G+  + L  
Sbjct:   221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
              P +  +NRGF F+ Y ++  A  +R+++++   K+ GN  T+ WADP   PD    A +
Sbjct:   281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
             VK L+V+N+    + E +++ F   G++ +V     K  K D+ F+H+ +R +A+KA+ +
Sbjct:   340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV-----KKLK-DYAFVHFEDRGAAVKAMDE 393

Query:   342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
                 EI+G+ +E+VLAKP   K+ E
Sbjct:   394 MNGKEIEGEEIEIVLAKPPDKKRKE 418


>UNIPROTKB|Q566E4 [details] [associations]
            symbol:Hnrnpr "Heterogeneous nuclear ribonucleoprotein R"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:631348 GO:GO:0000166 eggNOG:NOG258596
            HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GO:GO:0003676 GO:GO:0071013 OrthoDB:EOG4FN4HM
            HOGENOM:HOG000186082 CTD:10236 KO:K13161 EMBL:BC093598
            IPI:IPI00194562 RefSeq:NP_783193.2 UniGene:Rn.195396 SMR:Q566E4
            STRING:Q566E4 Ensembl:ENSRNOT00000016001 GeneID:319110
            KEGG:rno:319110 InParanoid:Q566E4 NextBio:672099
            Genevestigator:Q566E4 Uniprot:Q566E4
        Length = 632

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 93/265 (35%), Positives = 161/265 (60%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G+EVF+G +P+D  E++L  L E  G ++++RLM D  SG+++G+AF++F  KE A+
Sbjct:   161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             +A+    S E++ GK +   +S   NRLF+G++PKN T++   +    V  G+  + L  
Sbjct:   221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
              P +  +NRGF F+ Y ++  A  +R+++++   K+ GN  T+ WADP   PD    A +
Sbjct:   281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
             VK L+V+N+    + E +++ F   G++ +V     K  K D+ F+H+ +R +A+KA+ +
Sbjct:   340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV-----KKLK-DYAFVHFEDRGAAVKAMDE 393

Query:   342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
                 EI+G+ +E+VLAKP   K+ E
Sbjct:   394 MNGKEIEGEEIEIVLAKPPDKKRKE 418


>FB|FBgn0038826 [details] [associations]
            symbol:Syp "Syncrip" species:7227 "Drosophila melanogaster"
            [GO:0003729 "mRNA binding" evidence=ISS;IDA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0071011 "precatalytic
            spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
            [GO:0046011 "regulation of oskar mRNA translation" evidence=IMP]
            [GO:0007310 "oocyte dorsal/ventral axis specification"
            evidence=IMP] [GO:0046843 "dorsal appendage formation"
            evidence=IMP] [GO:0035770 "ribonucleoprotein granule" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:AE014297 GO:GO:0022008 GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071011
            GO:GO:0000398 UniGene:Dm.11889 GeneID:42460 KEGG:dme:Dmel_CG17838
            FlyBase:FBgn0038826 ChiTaRS:CG17838 GenomeRNAi:42460 NextBio:828899
            RefSeq:NP_650913.2 ProteinModelPortal:Q7KSA0 SMR:Q7KSA0
            STRING:Q7KSA0 EnsemblMetazoa:FBtr0083959 UCSC:CG17838-RB
            InParanoid:Q7KSA0 OMA:QPLGTNG Bgee:Q7KSA0 Uniprot:Q7KSA0
        Length = 711

 Score = 459 (166.6 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 96/264 (36%), Positives = 161/264 (60%)

Query:   102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFA 161
             +P NG EVF G +PKD  E++L  L E  G ++++RLM D  +G ++G+AFV+F ++E A
Sbjct:   159 VPGNGCEVFCGKIPKDMYEDELIPLFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAA 218

Query:   162 KKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
               A+ +L + E+K GK ++ ++S    RLF+GN+PK+  +DE  +    +  G+  + + 
Sbjct:   219 VNAVRQLDNHEIKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIY 278

Query:   221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAAS 280
               P +  +NRGF F+ Y ++  A  +++++     K+ G    + WADP+  PD     S
Sbjct:   279 SSPDDKKKNRGFCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTM-S 337

Query:   281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
             +VK LYV+N+  + S +K+KE F+++G+V +V     K  K D+ FIH+ +R SA++A++
Sbjct:   338 KVKVLYVRNLTQDVSEDKLKEQFEQYGKVERV-----KKIK-DYAFIHFEDRDSAVEAMR 391

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKK 364
                  EI    +EV LAKP +DKK
Sbjct:   392 GLNGKEIGASNIEVSLAKPPSDKK 415


>ZFIN|ZDB-GENE-030131-3104 [details] [associations]
            symbol:syncripl "synaptotagmin binding,
            cytoplasmic RNA interacting protein, like" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-3104
            GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
            InterPro:IPR006535 TIGRFAMs:TIGR01648 GO:GO:0003676 HSSP:P09651
            EMBL:BC046902 IPI:IPI00513002 RefSeq:NP_955973.1 UniGene:Dr.78854
            ProteinModelPortal:Q802X5 SMR:Q802X5 STRING:Q802X5 GeneID:324384
            KEGG:dre:324384 CTD:324384 InParanoid:Q802X5 NextBio:20808747
            Uniprot:Q802X5
        Length = 560

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 93/265 (35%), Positives = 162/265 (61%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G+E+F+G +P+D  E++L  L E  G ++++RLM D  SG ++G+AFV+F +KE A+
Sbjct:   159 PTIGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAFVTFCTKEAAQ 218

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             KA+   ++ E++ GK I   +S   NRLF+G++PK+ T+D+  +    V  G+  + L  
Sbjct:   219 KAVKLCNNNEIRPGKHIGVCISVANNRLFVGSIPKSKTKDQIVEEFAKVTEGLNDVILYH 278

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
              P +  +NRGF F+ Y ++  A  +R+++++   K+ GN  T+ WADP   PD    A +
Sbjct:   279 QPDDKKKNRGFCFLGYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-K 337

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
             VK L+V+N+    + E +++ F + G++ +V     K  K D+ FIH+ ER  A+KA+ +
Sbjct:   338 VKVLFVRNLASTVTEELLEKTFCQFGKLERV-----KKLK-DYAFIHFEERDGAVKALAE 391

Query:   342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
                 +++G+ +E+V AKP   K+ E
Sbjct:   392 LHGKDLEGEPIEIVFAKPPDQKRKE 416


>UNIPROTKB|F8W9F8 [details] [associations]
            symbol:A1CF "APOBEC1 complementation factor" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
            GO:GO:0005737 GO:GO:0000166 EMBL:AL512366 EMBL:AL589794
            IPI:IPI00981528 HGNC:HGNC:24086 Gene3D:3.30.160.20
            Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
            GO:GO:0003723 ProteinModelPortal:F8W9F8 SMR:F8W9F8
            Ensembl:ENST00000395489 UCSC:uc010qho.2 ArrayExpress:F8W9F8
            Bgee:F8W9F8 Uniprot:F8W9F8
        Length = 587

 Score = 424 (154.3 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
 Identities = 110/320 (34%), Positives = 171/320 (53%)

Query:   101 ALPPN-GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
             A PP  G E+FIG LP+D  E++L  LCE IG ++E+R+M D  +G ++G+AFV+F +K 
Sbjct:    42 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKV 100

Query:   160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
              AK AI +L++ E++ G+ +    S    RLF+G +PK    +E    ++ V  GV  + 
Sbjct:   101 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 160

Query:   219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
             +     + ++NRGF+FV Y ++  A  +R+K+L    +L G+   + WA+P+   D    
Sbjct:   161 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTM 220

Query:   279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
             +S VK LYV+N+  +TS E I++ F   + G V +V         RD+ F+H++ R  A+
Sbjct:   221 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 273

Query:   337 KAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSV 396
             +A+K      +DG  +EV LAKP  DK +   +    G   T L    Y    G  Y   
Sbjct:   274 EAMKALNGKVLDGSPIEVTLAKP-VDKDSYVRYTRGTGGRGTML-QGEYTYSLGQVYDPT 331

Query:   397 GTGFGVAAGFQQPMIYGRGP 416
              T  G A  F  P  Y   P
Sbjct:   332 TTYLG-APVFYAPQTYAAIP 350

 Score = 47 (21.6 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPM 426
             G GG     Y  +G G+ V    ++  +Y   P   GM + PM
Sbjct:   388 GLGGRGYLAYTGLGRGYQVKGDKREDKLYDILP---GMELTPM 427


>UNIPROTKB|Q9NQ94 [details] [associations]
            symbol:A1CF "APOBEC1 complementation factor" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005783
            "endoplasmic reticulum" evidence=IEA] [GO:0030895 "apolipoprotein B
            mRNA editing enzyme complex" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0003727 "single-stranded RNA binding"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0050821 "protein stabilization" evidence=IDA] [GO:0003725
            "double-stranded RNA binding" evidence=IDA] [GO:0003723 "RNA
            binding" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
            [GO:0010467 "gene expression" evidence=TAS] [GO:0016554 "cytidine
            to uridine editing" evidence=TAS] [GO:0016556 "mRNA modification"
            evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            InterPro:IPR014720 GO:GO:0005783 GO:GO:0005737 GO:GO:0010467
            GO:GO:0050821 GO:GO:0005654 GO:GO:0000166 EMBL:AJ272078
            EMBL:AJ272079 EMBL:AF209192 EMBL:AF271789 EMBL:AF271790
            EMBL:AK000324 EMBL:AK291982 EMBL:AL512366 EMBL:AL589794
            EMBL:CH471083 EMBL:BC130519 EMBL:BC144196 IPI:IPI00071360
            IPI:IPI00148257 IPI:IPI00299499 IPI:IPI00657723 IPI:IPI00657770
            IPI:IPI00981528 RefSeq:NP_001185747.1 RefSeq:NP_001185748.1
            RefSeq:NP_001185749.1 RefSeq:NP_055391.2 RefSeq:NP_620310.1
            RefSeq:NP_620311.1 UniGene:Hs.282795 PDB:2CPD PDBsum:2CPD
            ProteinModelPortal:Q9NQ94 SMR:Q9NQ94 IntAct:Q9NQ94 STRING:Q9NQ94
            PhosphoSite:Q9NQ94 DMDM:74761651 PaxDb:Q9NQ94 PRIDE:Q9NQ94
            Ensembl:ENST00000282641 Ensembl:ENST00000373993
            Ensembl:ENST00000373995 Ensembl:ENST00000373997
            Ensembl:ENST00000374001 Ensembl:ENST00000395495 GeneID:29974
            KEGG:hsa:29974 UCSC:uc001jjh.3 UCSC:uc001jji.3 UCSC:uc001jjj.3
            CTD:29974 GeneCards:GC10M052566 HGNC:HGNC:24086 HPA:HPA037779
            neXtProt:NX_Q9NQ94 PharmGKB:PA162375098 eggNOG:NOG258596
            HOVERGEN:HBG051917 InParanoid:Q9NQ94 OMA:PGYAVPN PhylomeDB:Q9NQ94
            Reactome:REACT_1675 EvolutionaryTrace:Q9NQ94 GenomeRNAi:29974
            NextBio:52719 ArrayExpress:Q9NQ94 Bgee:Q9NQ94 CleanEx:HS_A1CF
            Genevestigator:Q9NQ94 GermOnline:ENSG00000148584 GO:GO:0030895
            GO:GO:0005720 GO:GO:0004131 GO:GO:0003729 GO:GO:0003727
            GO:GO:0016554 GO:GO:0016556 GO:GO:0006397 Gene3D:3.30.160.20
            Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
            Uniprot:Q9NQ94
        Length = 594

 Score = 424 (154.3 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
 Identities = 110/320 (34%), Positives = 171/320 (53%)

Query:   101 ALPPN-GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
             A PP  G E+FIG LP+D  E++L  LCE IG ++E+R+M D  +G ++G+AFV+F +K 
Sbjct:    49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKV 107

Query:   160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
              AK AI +L++ E++ G+ +    S    RLF+G +PK    +E    ++ V  GV  + 
Sbjct:   108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167

Query:   219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
             +     + ++NRGF+FV Y ++  A  +R+K+L    +L G+   + WA+P+   D    
Sbjct:   168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTM 227

Query:   279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
             +S VK LYV+N+  +TS E I++ F   + G V +V         RD+ F+H++ R  A+
Sbjct:   228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 280

Query:   337 KAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSV 396
             +A+K      +DG  +EV LAKP  DK +   +    G   T L    Y    G  Y   
Sbjct:   281 EAMKALNGKVLDGSPIEVTLAKP-VDKDSYVRYTRGTGGRGTML-QGEYTYSLGQVYDPT 338

Query:   397 GTGFGVAAGFQQPMIYGRGP 416
              T  G A  F  P  Y   P
Sbjct:   339 TTYLG-APVFYAPQTYAAIP 357

 Score = 47 (21.6 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPM 426
             G GG     Y  +G G+ V    ++  +Y   P   GM + PM
Sbjct:   395 GLGGRGYLAYTGLGRGYQVKGDKREDKLYDILP---GMELTPM 434


>UNIPROTKB|Q5R9H4 [details] [associations]
            symbol:A1CF "APOBEC1 complementation factor" species:9601
            "Pongo abelii" [GO:0003727 "single-stranded RNA binding"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0030895
            "apolipoprotein B mRNA editing enzyme complex" evidence=ISS]
            [GO:0050821 "protein stabilization" evidence=ISS] [GO:0003725
            "double-stranded RNA binding" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            InterPro:IPR014720 GO:GO:0005783 GO:GO:0005737 GO:GO:0050821
            GO:GO:0000166 CTD:29974 HOVERGEN:HBG051917 GO:GO:0030895
            GO:GO:0003727 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
            InterPro:IPR006535 TIGRFAMs:TIGR01648 EMBL:CR859414
            RefSeq:NP_001127437.1 UniGene:Pab.12059 ProteinModelPortal:Q5R9H4
            SMR:Q5R9H4 GeneID:100174508 KEGG:pon:100174508 InParanoid:Q5R9H4
            Uniprot:Q5R9H4
        Length = 587

 Score = 424 (154.3 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
 Identities = 110/320 (34%), Positives = 171/320 (53%)

Query:   101 ALPPN-GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
             A PP  G E+FIG LP+D  E++L  LCE IG ++E+R+M D  +G ++G+AFV+F +K 
Sbjct:    49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKL 107

Query:   160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
              AK AI +L++ E++ G+ +    S    RLF+G +PK    +E    ++ V  GV  + 
Sbjct:   108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167

Query:   219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
             +     + ++NRGF+FV Y ++  A  +R+K+L    +L G+   + WA+P+   D    
Sbjct:   168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227

Query:   279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
             +S VK LYV+N+  +TS E I++ F   + G V +V         RD+ F+H++ R  A+
Sbjct:   228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 280

Query:   337 KAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSV 396
             +A+K      +DG  +EV LAKP  DK +   +    G   T L    Y    G  Y   
Sbjct:   281 EAMKALNGKVLDGSPIEVTLAKP-VDKDSYVRYTRGTGGRGTML-QGEYTYSLGQVYDPT 338

Query:   397 GTGFGVAAGFQQPMIYGRGP 416
              T  G A  F  P  Y   P
Sbjct:   339 TTYLG-APVFYAPQAYAAIP 357

 Score = 47 (21.6 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPM 426
             G GG     Y  +G G+ V    ++  +Y   P   GM + PM
Sbjct:   387 GLGGRGYLAYTGLGRGYQVKGDKREDKLYDILP---GMELTPM 426


>UNIPROTKB|E1BZR1 [details] [associations]
            symbol:HNRNPR "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
            GO:GO:0071013 OMA:YYPPPRM EMBL:AADN02051307 EMBL:AADN02051308
            IPI:IPI00597410 ProteinModelPortal:E1BZR1
            Ensembl:ENSGALT00000001185 ArrayExpress:E1BZR1 Uniprot:E1BZR1
        Length = 661

 Score = 455 (165.2 bits), Expect = 5.9e-43, P = 5.9e-43
 Identities = 92/265 (34%), Positives = 162/265 (61%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G+EVF+G +P+D  E++L  L E  G ++++RLM D  SG+++G+AF++F SK+ A+
Sbjct:   189 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCSKDAAQ 248

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             +A+    + E++ GK +   +S   NRLF+G++PKN T++   +    V  G+  + L  
Sbjct:   249 EAVKLCDNYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFNKVTEGLVDVILYH 308

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
              P +  +NRGF F+ Y ++  A  +R+++++   K+ GN  T+ WADP   PD    A +
Sbjct:   309 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 367

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
             VK L+V+N+    + E +++ F   G++ +V     K  K D+ F+H+ +R +A+KA+ +
Sbjct:   368 VKVLFVRNLATTVTEEILEKSFSEFGKLERV-----KKLK-DYAFVHFEDRGAAVKAMNE 421

Query:   342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
                 EI+G+ +E+VLAKP   K+ E
Sbjct:   422 MNGKEIEGEEIEIVLAKPPDKKRKE 446


>UNIPROTKB|F1SD00 [details] [associations]
            symbol:A1CF "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0050821 "protein stabilization" evidence=IEA]
            [GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
            "single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
            GO:GO:0050821 GO:GO:0000166 OMA:PGYAVPN GO:GO:0030895 GO:GO:0003727
            Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 EMBL:CT954228
            Ensembl:ENSSSCT00000011416 Uniprot:F1SD00
        Length = 546

 Score = 420 (152.9 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
 Identities = 108/316 (34%), Positives = 169/316 (53%)

Query:   101 ALPPN-GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
             A PP  G E+FIG LP+D  E++L  LCE IG ++E+R+M D  +G ++G+AFV+F +K+
Sbjct:    49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKQ 107

Query:   160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
              AK AI +L++ E++ G+ +    S    RLF+G +PK    +E    ++ V  GV  + 
Sbjct:   108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167

Query:   219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
             +     + ++NRGF+FV Y ++  A  +R+K+L    +L G+   + WA+P+   D    
Sbjct:   168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227

Query:   279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
             +S VK LYV+N+  +TS E I++ F   + G V +V         RD+ F+H+  R  A+
Sbjct:   228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFTNREDAV 280

Query:   337 KAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSV 396
             +A+K      +DG  +EV LAKP  DK +   +    G   T L    Y    G  Y   
Sbjct:   281 EAMKALNGKVLDGSPIEVTLAKP-VDKDSYVRYTRGTGGRGTML-QGEYTYSLGHVYDPT 338

Query:   397 GTGFGVAAGFQQPMIY 412
                 G A  F  P  Y
Sbjct:   339 TAYLG-APVFYAPQAY 353

 Score = 48 (22.0 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPM 426
             G GG     Y  +G G+ V    ++  +Y   P   GM + PM
Sbjct:   395 GLGGRGYLAYTGLGRGYQVKGDKREDKLYDLLP---GMELTPM 434


>RGD|619834 [details] [associations]
            symbol:A1cf "APOBEC1 complementation factor" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003725 "double-stranded RNA binding" evidence=ISO;ISS]
            [GO:0003727 "single-stranded RNA binding" evidence=ISO;ISS]
            [GO:0003729 "mRNA binding" evidence=IDA] [GO:0004131 "cytosine
            deaminase activity" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005720 "nuclear heterochromatin" evidence=IDA]
            [GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0005783 "endoplasmic
            reticulum" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0016554 "cytidine to uridine editing"
            evidence=TAS] [GO:0016556 "mRNA modification" evidence=NAS;IMP]
            [GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
            evidence=ISO;ISS;TAS] [GO:0050821 "protein stabilization"
            evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
            RGD:619834 GO:GO:0005783 GO:GO:0005737 GO:GO:0050821 GO:GO:0000166
            CTD:29974 HOVERGEN:HBG051917 GO:GO:0030895 GO:GO:0005720
            GO:GO:0004131 GO:GO:0003729 GO:GO:0003727 GO:GO:0016554
            GO:GO:0016556 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
            InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
            HOGENOM:HOG000186083 OrthoDB:EOG4SXNCC EMBL:AF290984 EMBL:AF442133
            EMBL:AF442134 EMBL:AF442135 EMBL:AY028945 IPI:IPI00382071
            IPI:IPI00679207 IPI:IPI00679214 IPI:IPI00679221 RefSeq:NP_596891.1
            UniGene:Rn.162520 ProteinModelPortal:Q923K9 SMR:Q923K9
            STRING:Q923K9 PhosphoSite:Q923K9 PRIDE:Q923K9
            Ensembl:ENSRNOT00000052256 GeneID:170912 KEGG:rno:170912
            UCSC:RGD:619834 eggNOG:NOG246793 InParanoid:Q923K9 OMA:HAGVHHI
            NextBio:621377 ArrayExpress:Q923K9 Genevestigator:Q923K9
            Uniprot:Q923K9
        Length = 594

 Score = 417 (151.9 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
 Identities = 106/317 (33%), Positives = 169/317 (53%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G E+FIG LP+D  E++L  LCE IG ++E+R+M D  +G ++G+AFV+F +K+ AK
Sbjct:    52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKQEAK 110

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
              AI +L++ E++ G+ +    S    RLF+G +PK    +E    ++ V  GV  + +  
Sbjct:   111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
                + ++NRGF+FV Y ++  A  +R+++L    +L G+   + WA+P+   D    +S 
Sbjct:   171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229

Query:   282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
             VK LYV+N+  +TS E I++ F   + G V +V         RD+ F+H++ R  A++A+
Sbjct:   230 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283

Query:   340 KDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTG 399
             K      +DG  +EV LAKP  DK +   +    G   T L    Y       Y    T 
Sbjct:   284 KALNGKVLDGSPIEVTLAKP-VDKDSYVRYTRGTGGRNTMLQEYTYP--LSHVYDPTTTY 340

Query:   400 FGVAAGFQQPMIYGRGP 416
              G A  F  P  Y   P
Sbjct:   341 LG-APVFYTPQAYAAIP 356

 Score = 51 (23.0 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
 Identities = 14/43 (32%), Positives = 19/43 (44%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPM 426
             G GG     Y  +G G+ V    +Q  +Y   P   GM + PM
Sbjct:   394 GLGGRGYLAYTGLGRGYQVKGDKRQDKLYDLLP---GMELTPM 433


>UNIPROTKB|F1LNL0 [details] [associations]
            symbol:A1cf "APOBEC1 complementation factor" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            InterPro:IPR014720 RGD:619834 GO:GO:0050821 GO:GO:0000166
            GO:GO:0030895 GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
            InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
            IPI:IPI00679207 Ensembl:ENSRNOT00000067643 ArrayExpress:F1LNL0
            Uniprot:F1LNL0
        Length = 594

 Score = 417 (151.9 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
 Identities = 106/317 (33%), Positives = 169/317 (53%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G E+FIG LP+D  E++L  LCE IG ++E+R+M D  +G ++G+AFV+F +K+ AK
Sbjct:    52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKQEAK 110

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
              AI +L++ E++ G+ +    S    RLF+G +PK    +E    ++ V  GV  + +  
Sbjct:   111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
                + ++NRGF+FV Y ++  A  +R+++L    +L G+   + WA+P+   D    +S 
Sbjct:   171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229

Query:   282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
             VK LYV+N+  +TS E I++ F   + G V +V         RD+ F+H++ R  A++A+
Sbjct:   230 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283

Query:   340 KDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTG 399
             K      +DG  +EV LAKP  DK +   +    G   T L    Y       Y    T 
Sbjct:   284 KALNGKVLDGSPIEVTLAKP-VDKDSYVRYTRGTGGRNTMLQEYTYP--LSHVYDPTTTY 340

Query:   400 FGVAAGFQQPMIYGRGP 416
              G A  F  P  Y   P
Sbjct:   341 LG-APVFYTPQAYAAIP 356

 Score = 51 (23.0 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
 Identities = 14/43 (32%), Positives = 19/43 (44%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPM 426
             G GG     Y  +G G+ V    +Q  +Y   P   GM + PM
Sbjct:   394 GLGGRGYLAYTGLGRGYQVKGDKRQDKLYDLLP---GMELTPM 433


>UNIPROTKB|F1MCT8 [details] [associations]
            symbol:SYNCRIP "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0071204 "histone pre-mRNA 3'end processing complex"
            evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
            evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
            evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
            GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
            EMBL:DAAA02026516 EMBL:DAAA02026515 IPI:IPI00721347
            Ensembl:ENSBTAT00000008774 Uniprot:F1MCT8
        Length = 638

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 104/312 (33%), Positives = 178/312 (57%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G+E+F+G +P+D  E++L  L E  G ++++RLM D  +G ++G+AFV+F +KE A+
Sbjct:   173 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 232

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             +A+   ++ E++ GK I   +S   NRLF+G++PK+ T+++  +    V  G+  + L  
Sbjct:   233 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 292

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
              P +  +NRGF F+ Y ++  A  +R+++++   K+ GN  T+ WADP   PD    A +
Sbjct:   293 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 351

Query:   282 VKALYVKNIPDNTSTEKIKE-LFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
             VK L+V+N+  NT TE+I E  F + G++ +V     K  K D+ FIH+ ER  A+KA++
Sbjct:   352 VKVLFVRNLA-NTVTEEILEKAFSQFGKLERV-----KKLK-DYAFIHFDERDGAVKAME 404

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGF 400
             +    +++G+ +E+V AKP   K+ E            +  +  YG     P  + G G 
Sbjct:   405 EMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP-PHMPPPTRGRGR 463

Query:   401 GVAAGFQQPMIY 412
             G   G+  P  Y
Sbjct:   464 GGRGGYGYPPDY 475


>UNIPROTKB|F6XIK8 [details] [associations]
            symbol:SYNCRIP "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
            CTD:10492 KO:K13160 OMA:GNMATEH Ensembl:ENSCAFT00000004869
            EMBL:AAEX03008501 RefSeq:XP_003431698.1 ProteinModelPortal:F6XIK8
            GeneID:474986 KEGG:cfa:474986 Uniprot:F6XIK8
        Length = 562

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 104/312 (33%), Positives = 178/312 (57%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G+E+F+G +P+D  E++L  L E  G ++++RLM D  +G ++G+AFV+F +KE A+
Sbjct:   158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             +A+   ++ E++ GK I   +S   NRLF+G++PK+ T+++  +    V  G+  + L  
Sbjct:   218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
              P +  +NRGF F+ Y ++  A  +R+++++   K+ GN  T+ WADP   PD    A +
Sbjct:   278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336

Query:   282 VKALYVKNIPDNTSTEKIKE-LFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
             VK L+V+N+  NT TE+I E  F + G++ +V     K  K D+ FIH+ ER  A+KA++
Sbjct:   337 VKVLFVRNLA-NTVTEEILEKAFSQFGKLERV-----KKLK-DYAFIHFDERDGAVKAME 389

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGF 400
             +    +++G+ +E+V AKP   K+ E            +  +  YG     P  + G G 
Sbjct:   390 EMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP-PHMPPPTRGRGR 448

Query:   401 GVAAGFQQPMIY 412
             G   G+  P  Y
Sbjct:   449 GGRGGYGYPPDY 460


>UNIPROTKB|O60506 [details] [associations]
            symbol:SYNCRIP "Heterogeneous nuclear ribonucleoprotein Q"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
            [GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005654
            "nucleoplasm" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
            evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IDA] [GO:0071204 "histone pre-mRNA 3'end processing
            complex" evidence=ISS] [GO:0070937 "CRD-mediated mRNA stability
            complex" evidence=IDA] [GO:0070934 "CRD-mediated mRNA
            stabilization" evidence=IMP] [GO:0030529 "ribonucleoprotein
            complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC] [GO:0017148 "negative regulation of translation"
            evidence=IDA;IMP] [GO:0071346 "cellular response to
            interferon-gamma" evidence=IDA] [GO:0003723 "RNA binding"
            evidence=TAS] [GO:0005634 "nucleus" evidence=TAS] [GO:0006396 "RNA
            processing" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
            [GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005783 GO:GO:0019048 GO:GO:0005654 GO:GO:0017148
            GO:GO:0000166 EMBL:CH471051 eggNOG:NOG258596 HOVERGEN:HBG051917
            Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
            GO:GO:0003723 GO:GO:0071346 GO:GO:0000398 GO:GO:0071013
            GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204
            EMBL:AF155568 EMBL:AF037448 EMBL:AY034481 EMBL:AY034482
            EMBL:AY034483 EMBL:AK222776 EMBL:AL136082 EMBL:BC015575
            EMBL:BC032643 EMBL:BC040844 IPI:IPI00018140 IPI:IPI00402182
            IPI:IPI00402183 IPI:IPI00402184 IPI:IPI00402185
            RefSeq:NP_001153145.1 RefSeq:NP_001153146.1 RefSeq:NP_001153147.1
            RefSeq:NP_001153148.1 RefSeq:NP_001153149.1 RefSeq:NP_001240700.1
            RefSeq:NP_006363.4 UniGene:Hs.571177 PDB:2DGU PDBsum:2DGU
            ProteinModelPortal:O60506 SMR:O60506 IntAct:O60506
            MINT:MINT-2796763 STRING:O60506 PhosphoSite:O60506 PaxDb:O60506
            PRIDE:O60506 DNASU:10492 Ensembl:ENST00000355238
            Ensembl:ENST00000369622 GeneID:10492 KEGG:hsa:10492 UCSC:uc003pku.3
            UCSC:uc003pkv.3 UCSC:uc003pkw.3 UCSC:uc003pkx.3 UCSC:uc003pkz.2
            CTD:10492 GeneCards:GC06M086267 HGNC:HGNC:16918 HPA:CAB010895
            neXtProt:NX_O60506 PharmGKB:PA134985065 InParanoid:O60506 KO:K13160
            OMA:GNMATEH OrthoDB:EOG4FN4HM PhylomeDB:O60506 ChiTaRS:SYNCRIP
            EvolutionaryTrace:O60506 GenomeRNAi:10492 NextBio:39814
            ArrayExpress:O60506 Bgee:O60506 CleanEx:HS_SYNCRIP
            Genevestigator:O60506 GermOnline:ENSG00000135316 Uniprot:O60506
        Length = 623

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 104/312 (33%), Positives = 178/312 (57%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G+E+F+G +P+D  E++L  L E  G ++++RLM D  +G ++G+AFV+F +KE A+
Sbjct:   158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             +A+   ++ E++ GK I   +S   NRLF+G++PK+ T+++  +    V  G+  + L  
Sbjct:   218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
              P +  +NRGF F+ Y ++  A  +R+++++   K+ GN  T+ WADP   PD    A +
Sbjct:   278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336

Query:   282 VKALYVKNIPDNTSTEKIKE-LFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
             VK L+V+N+  NT TE+I E  F + G++ +V     K  K D+ FIH+ ER  A+KA++
Sbjct:   337 VKVLFVRNLA-NTVTEEILEKAFSQFGKLERV-----KKLK-DYAFIHFDERDGAVKAME 389

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGF 400
             +    +++G+ +E+V AKP   K+ E            +  +  YG     P  + G G 
Sbjct:   390 EMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP-PHMPPPTRGRGR 448

Query:   401 GVAAGFQQPMIY 412
             G   G+  P  Y
Sbjct:   449 GGRGGYGYPPDY 460


>UNIPROTKB|F2Z5D4 [details] [associations]
            symbol:SYNCRIP "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0071204 "histone pre-mRNA 3'end processing complex"
            evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0070937 "CRD-mediated mRNA stability complex"
            evidence=IEA] [GO:0070934 "CRD-mediated mRNA stabilization"
            evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
            GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
            EMBL:CU076072 Ensembl:ENSSSCT00000004748 Uniprot:F2Z5D4
        Length = 627

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 104/312 (33%), Positives = 178/312 (57%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G+E+F+G +P+D  E++L  L E  G ++++RLM D  +G ++G+AFV+F +KE A+
Sbjct:   162 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 221

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             +A+   ++ E++ GK I   +S   NRLF+G++PK+ T+++  +    V  G+  + L  
Sbjct:   222 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 281

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
              P +  +NRGF F+ Y ++  A  +R+++++   K+ GN  T+ WADP   PD    A +
Sbjct:   282 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 340

Query:   282 VKALYVKNIPDNTSTEKIKE-LFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
             VK L+V+N+  NT TE+I E  F + G++ +V     K  K D+ FIH+ ER  A+KA++
Sbjct:   341 VKVLFVRNLA-NTVTEEILEKAFSQFGKLERV-----KKLK-DYAFIHFDERDGAVKAME 393

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGF 400
             +    +++G+ +E+V AKP   K+ E            +  +  YG     P  + G G 
Sbjct:   394 EMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP-PHMPPPTRGRGR 452

Query:   401 GVAAGFQQPMIY 412
             G   G+  P  Y
Sbjct:   453 GGRGGYGYPPDY 464


>UNIPROTKB|F1NWI9 [details] [associations]
            symbol:SYNCRIP "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0070934
            "CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
            "CRD-mediated mRNA stability complex" evidence=IEA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IEA] [GO:0071204 "histone
            pre-mRNA 3'end processing complex" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071013
            GO:GO:0008143 GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 OMA:GNMATEH
            EMBL:AADN02002396 IPI:IPI00680994 Ensembl:ENSGALT00000031678
            ArrayExpress:F1NWI9 Uniprot:F1NWI9
        Length = 622

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 104/312 (33%), Positives = 178/312 (57%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G+E+F+G +P+D  E++L  L E  G ++++RLM D  +G ++G+AFV+F +KE A+
Sbjct:   157 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 216

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             +A+   ++ E++ GK I   +S   NRLF+G++PK+ T+++  +    V  G+  + L  
Sbjct:   217 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVILYH 276

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
              P +  +NRGF F+ Y ++  A  +R+++++   K+ GN  T+ WADP   PD    A +
Sbjct:   277 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVVTVEWADPIEDPDPEVMA-K 335

Query:   282 VKALYVKNIPDNTSTEKIKE-LFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
             VK L+V+N+  NT TE+I E  F + G++ +V     K  K D+ FIH+ ER  A+KA++
Sbjct:   336 VKVLFVRNLA-NTVTEEILEKAFSQFGKLERV-----KKLK-DYAFIHFDERDGAVKAME 388

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGF 400
             +    +++G+ +E+V AKP   K+ E            +  +  YG     P  + G G 
Sbjct:   389 EMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP-PHMPPPTRGRGR 447

Query:   401 GVAAGFQQPMIY 412
             G   G+  P  Y
Sbjct:   448 GGRGGYGYPPDY 459


>MGI|MGI:1891690 [details] [associations]
            symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
            interacting protein" species:10090 "Mus musculus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
            complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
            RNA binding" evidence=IDA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0017148 "negative regulation of translation" evidence=ISO]
            [GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0070934
            "CRD-mediated mRNA stabilization" evidence=ISO] [GO:0070937
            "CRD-mediated mRNA stability complex" evidence=ISO] [GO:0071013
            "catalytic step 2 spliceosome" evidence=ISO] [GO:0071204 "histone
            pre-mRNA 3'end processing complex" evidence=IDA] [GO:0071346
            "cellular response to interferon-gamma" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1891690 GO:GO:0008380 GO:GO:0000166
            eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
            Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
            GeneTree:ENSGT00550000074366 GO:GO:0071013 GO:GO:0008143
            GO:GO:0070937 GO:GO:0070934 GO:GO:0071204 CTD:10492 KO:K13160
            OMA:GNMATEH OrthoDB:EOG4FN4HM EMBL:AF093821 EMBL:AB035725
            EMBL:AK034845 EMBL:AK077588 EMBL:AK078158 EMBL:BC004001
            EMBL:BC041148 EMBL:BC050079 EMBL:BC055863 EMBL:BC058807
            EMBL:BC080309 EMBL:BC108363 EMBL:AF408434 IPI:IPI00406117
            IPI:IPI00406118 RefSeq:NP_062640.2 RefSeq:NP_062770.1
            UniGene:Mm.260545 ProteinModelPortal:Q7TMK9 SMR:Q7TMK9
            STRING:Q7TMK9 PhosphoSite:Q7TMK9 REPRODUCTION-2DPAGE:IPI00406117
            PaxDb:Q7TMK9 PRIDE:Q7TMK9 Ensembl:ENSMUST00000069221
            Ensembl:ENSMUST00000173801 Ensembl:ENSMUST00000174282 GeneID:56403
            KEGG:mmu:56403 UCSC:uc009qyo.1 UCSC:uc009qyq.1 InParanoid:Q7TMK9
            NextBio:312520 Bgee:Q7TMK9 Genevestigator:Q7TMK9
            GermOnline:ENSMUSG00000032423 Uniprot:Q7TMK9
        Length = 623

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 104/312 (33%), Positives = 178/312 (57%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G+E+F+G +P+D  E++L  L E  G ++++RLM D  +G ++G+AFV+F +KE A+
Sbjct:   158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             +A+   ++ E++ GK I   +S   NRLF+G++PK+ T+++  +    V  G+  + L  
Sbjct:   218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
              P +  +NRGF F+ Y ++  A  +R+++++   K+ GN  T+ WADP   PD    A +
Sbjct:   278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336

Query:   282 VKALYVKNIPDNTSTEKIKEL-FQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
             VK L+V+N+  NT TE+I E  F + G++ +V     K  K D+ FIH+ ER  A+KA++
Sbjct:   337 VKVLFVRNLA-NTVTEEILEKSFSQFGKLERV-----KKLK-DYAFIHFDERDGAVKAME 389

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGF 400
             +    +++G+ +E+V AKP   K+ E            +  +  YG     P  + G G 
Sbjct:   390 EMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP-PHMPPPTRGRGR 448

Query:   401 GVAAGFQQPMIY 412
             G   G+  P  Y
Sbjct:   449 GGRGGYGYPPDY 460


>RGD|1305683 [details] [associations]
            symbol:Syncrip "synaptotagmin binding, cytoplasmic RNA
            interacting protein" species:10116 "Rattus norvegicus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
            complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008143 "poly(A)
            RNA binding" evidence=ISO] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0017148 "negative regulation of translation" evidence=ISO]
            [GO:0030529 "ribonucleoprotein complex" evidence=ISO;ISS]
            [GO:0070934 "CRD-mediated mRNA stabilization" evidence=ISO]
            [GO:0070937 "CRD-mediated mRNA stability complex" evidence=ISO;ISS]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
            [GO:0071204 "histone pre-mRNA 3'end processing complex"
            evidence=ISO;ISS] [GO:0071346 "cellular response to
            interferon-gamma" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1305683 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
            eggNOG:NOG258596 HOVERGEN:HBG051917 GO:GO:0006397
            Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
            GeneTree:ENSGT00550000074366 GO:GO:0005681 GO:GO:0003723
            GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160 EMBL:AY325202
            IPI:IPI00382222 RefSeq:NP_001041381.1 UniGene:Rn.202606
            ProteinModelPortal:Q7TP47 SMR:Q7TP47 IntAct:Q7TP47 STRING:Q7TP47
            PhosphoSite:Q7TP47 PRIDE:Q7TP47 Ensembl:ENSRNOT00000041655
            GeneID:363113 KEGG:rno:363113 UCSC:RGD:1305683 HOGENOM:HOG000186082
            NextBio:682484 ArrayExpress:Q7TP47 Genevestigator:Q7TP47
            GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
        Length = 533

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 104/312 (33%), Positives = 178/312 (57%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G+E+F+G +P+D  E++L  L E  G ++++RLM D  +G ++G+AFV+F +KE A+
Sbjct:    68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             +A+   ++ E++ GK I   +S   NRLF+G++PK+ T+++  +    V  G+  + L  
Sbjct:   128 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 187

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
              P +  +NRGF F+ Y ++  A  +R+++++   K+ GN  T+ WADP   PD    A +
Sbjct:   188 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 246

Query:   282 VKALYVKNIPDNTSTEKIKEL-FQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
             VK L+V+N+  NT TE+I E  F + G++ +V     K  K D+ FIH+ ER  A+KA++
Sbjct:   247 VKVLFVRNLA-NTVTEEILEKSFSQFGKLERV-----KKLK-DYAFIHFDERDGAVKAME 299

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGF 400
             +    +++G+ +E+V AKP   K+ E            +  +  YG     P  + G G 
Sbjct:   300 EMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP-PHMPPPTRGRGR 358

Query:   401 GVAAGFQQPMIY 412
             G   G+  P  Y
Sbjct:   359 GGRGGYGYPPDY 370


>UNIPROTKB|Q7TP47 [details] [associations]
            symbol:Syncrip "Heterogeneous nuclear ribonucleoprotein Q"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1305683 GO:GO:0005654
            GO:GO:0008380 GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
            GO:GO:0006397 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0005681
            GO:GO:0003723 GO:GO:0070937 GO:GO:0071204 CTD:10492 KO:K13160
            EMBL:AY325202 IPI:IPI00382222 RefSeq:NP_001041381.1
            UniGene:Rn.202606 ProteinModelPortal:Q7TP47 SMR:Q7TP47
            IntAct:Q7TP47 STRING:Q7TP47 PhosphoSite:Q7TP47 PRIDE:Q7TP47
            Ensembl:ENSRNOT00000041655 GeneID:363113 KEGG:rno:363113
            UCSC:RGD:1305683 HOGENOM:HOG000186082 NextBio:682484
            ArrayExpress:Q7TP47 Genevestigator:Q7TP47
            GermOnline:ENSRNOG00000000204 Uniprot:Q7TP47
        Length = 533

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 104/312 (33%), Positives = 178/312 (57%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G+E+F+G +P+D  E++L  L E  G ++++RLM D  +G ++G+AFV+F +KE A+
Sbjct:    68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             +A+   ++ E++ GK I   +S   NRLF+G++PK+ T+++  +    V  G+  + L  
Sbjct:   128 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 187

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
              P +  +NRGF F+ Y ++  A  +R+++++   K+ GN  T+ WADP   PD    A +
Sbjct:   188 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 246

Query:   282 VKALYVKNIPDNTSTEKIKEL-FQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340
             VK L+V+N+  NT TE+I E  F + G++ +V     K  K D+ FIH+ ER  A+KA++
Sbjct:   247 VKVLFVRNLA-NTVTEEILEKSFSQFGKLERV-----KKLK-DYAFIHFDERDGAVKAME 299

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGF 400
             +    +++G+ +E+V AKP   K+ E            +  +  YG     P  + G G 
Sbjct:   300 EMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP-PHMPPPTRGRGR 358

Query:   401 GVAAGFQQPMIY 412
             G   G+  P  Y
Sbjct:   359 GGRGGYGYPPDY 370


>MGI|MGI:1917115 [details] [associations]
            symbol:A1cf "APOBEC1 complementation factor" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=TAS] [GO:0003727 "single-stranded RNA binding"
            evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0004131
            "cytosine deaminase activity" evidence=ISO] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005720 "nuclear heterochromatin" evidence=ISO]
            [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005783 "endoplasmic
            reticulum" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0016554 "cytidine to uridine editing"
            evidence=TAS] [GO:0016556 "mRNA modification" evidence=ISO]
            [GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
            evidence=ISO;TAS] [GO:0050821 "protein stabilization" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 InterPro:IPR014720 MGI:MGI:1917115 GO:GO:0005783
            GO:GO:0005737 GO:GO:0050821 GO:GO:0000166 CTD:29974
            eggNOG:NOG258596 HOVERGEN:HBG051917 OMA:PGYAVPN GO:GO:0030895
            GO:GO:0005720 GO:GO:0004131 GO:GO:0003729 GO:GO:0003727
            GO:GO:0016554 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
            InterPro:IPR006535 TIGRFAMs:TIGR01648 EMBL:AY566862 EMBL:AY566863
            EMBL:AY566864 EMBL:AC117816 EMBL:AC125019 EMBL:BC089622
            IPI:IPI00357048 IPI:IPI00665782 IPI:IPI00667120
            RefSeq:NP_001074543.1 UniGene:Mm.87538 ProteinModelPortal:Q5YD48
            SMR:Q5YD48 STRING:Q5YD48 PhosphoSite:Q5YD48 PaxDb:Q5YD48
            PRIDE:Q5YD48 Ensembl:ENSMUST00000075838 GeneID:69865 KEGG:mmu:69865
            UCSC:uc008het.1 UCSC:uc008heu.1 UCSC:uc008hev.1
            GeneTree:ENSGT00550000074366 HOGENOM:HOG000186083 InParanoid:Q5YD48
            OrthoDB:EOG4SXNCC NextBio:330501 Bgee:Q5YD48 CleanEx:MM_A1CF
            Genevestigator:Q5YD48 GermOnline:ENSMUSG00000052595 Uniprot:Q5YD48
        Length = 595

 Score = 417 (151.9 bits), Expect = 2.2e-42, Sum P(2) = 2.2e-42
 Identities = 95/264 (35%), Positives = 155/264 (58%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G E+FIG LP+D  E++L  LCE IG ++E+RLM D  +G ++G+AFV+F +K+ AK
Sbjct:    52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDF-NGNNRGYAFVTFSNKQEAK 110

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
              AI +L++ E++ G+ +    S    RLF+G +PK    +E    ++ V  GV  + +  
Sbjct:   111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
                + ++NRGF+FV Y ++  A  +R+++L    +L G+   + WA+P+   D    +S 
Sbjct:   171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229

Query:   282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
             VK LYV+N+  +TS E I++ F   + G V +V         RD+ F+H++ R  A++A+
Sbjct:   230 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283

Query:   340 KDTEKYEIDGQVLEVVLAKPQTDK 363
             K      +DG  +EV LAKP  DK
Sbjct:   284 KALNGKVLDGSPIEVTLAKP-VDK 306

 Score = 48 (22.0 bits), Expect = 2.2e-42, Sum P(2) = 2.2e-42
 Identities = 13/43 (30%), Positives = 19/43 (44%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPM 426
             G GG     Y  +G G+ V    ++  +Y   P   GM + PM
Sbjct:   395 GLGGRGYLAYTGLGRGYHVKGDKREDKLYDLLP---GMELTPM 434


>UNIPROTKB|F1LUZ6 [details] [associations]
            symbol:Hnrnpr "Protein Hnrnpr" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:631348 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
            IPI:IPI00391659 ProteinModelPortal:F1LUZ6
            Ensembl:ENSRNOT00000015971 OMA:MENVERT ArrayExpress:F1LUZ6
            Uniprot:F1LUZ6
        Length = 381

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 91/258 (35%), Positives = 158/258 (61%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G+EVF+G +P+D  E++L  L E  G ++++RLM D  SG+++G+AF++F  KE A+
Sbjct:   130 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 189

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             +A+    S E++ GK +   +S   NRLF+G++PKN T++   +    V  G+  + L  
Sbjct:   190 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 249

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
              P +  +NRGF F+ Y ++  A  +R+++++   K+ GN  T+ WADP   PD    A +
Sbjct:   250 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 308

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
             VK L+V+N+    + E +++ F   G++ +V     K  K D+ F+H+ +R +A+KA+ +
Sbjct:   309 VKVLFVRNLATTVTEEILEKSFSEFGKLERV-----KKLK-DYAFVHFEDRGAAVKAMDE 362

Query:   342 TEKYEIDGQVLEVVLAKP 359
                 EI+G+ +E+VLAKP
Sbjct:   363 MNGKEIEGEEIEIVLAKP 380


>UNIPROTKB|Q2L7G6 [details] [associations]
            symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
            "nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 HOVERGEN:HBG051917
            Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
            GO:GO:0003676 GO:GO:0030529 EMBL:AL109936 UniGene:Hs.373763
            HGNC:HGNC:5047 ChiTaRS:HNRNPR EMBL:DQ351905 IPI:IPI00856038
            SMR:Q2L7G6 STRING:Q2L7G6 Ensembl:ENST00000427764 UCSC:uc010odw.2
            Uniprot:Q2L7G6
        Length = 595

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 90/260 (34%), Positives = 158/260 (60%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             +VF+G +P+D  E++L  L E  G ++++RLM D  SG+++G+AF++F  KE A++A+  
Sbjct:   128 KVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKL 187

Query:   168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
               S E++ GK +   +S   NRLF+G++PKN T++   +    V  G+  + L   P + 
Sbjct:   188 CDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDDK 247

Query:   227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
              +NRGF F+ Y ++  A  +R+++++   K+ GN  T+ WADP   PD    A +VK L+
Sbjct:   248 KKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVLF 306

Query:   287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346
             V+N+    + E +++ F   G++ +V     K  K D+ F+H+ +R +A+KA+ +    E
Sbjct:   307 VRNLATTVTEEILEKSFSEFGKLERV-----KKLK-DYAFVHFEDRGAAVKAMDEMNGKE 360

Query:   347 IDGQVLEVVLAKPQTDKKTE 366
             I+G+ +E+VLAKP   K+ E
Sbjct:   361 IEGEEIEIVLAKPPDKKRKE 380

 Score = 149 (57.5 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 81/317 (25%), Positives = 140/317 (44%)

Query:    68 ANRNDDDTPHVEEEEKP--TASVGEDEKDKHAQLLALPPNGSE----VFIGGLPK--DAS 119
             AN+ + +   ++EEE+P  T+SV   E  K      LP   +E    +F  GL    D  
Sbjct:     2 ANQVNGNAVQLKEEEEPMDTSSVTHTEHYKTLIEAGLPQKVAERLDEIFQTGLVAYVDLD 61

Query:   120 EEDLRDLCEPIGDVFEVRLMKD-KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178
             E  + D      +   + +++  KES  S     V  +S  F    +     +E +G  +
Sbjct:    62 ERAI-DALREFNEEGALSVLQQFKESDLSH----VQNKSA-FLCGVMKTYRQREKQGSKV 115

Query:   179 RCSLS---ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFV 235
             + S     E K ++F+G +P++  EDE   + E  GP +  + L+ DP +  +NRG++F+
Sbjct:   116 QESTKGPDEAKIKVFVGKIPRDLYEDELVPLFEKAGP-IWDLRLMMDPLS-GQNRGYAFI 173

Query:   236 LYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTS 295
              +    C   + Q+ +    KL     +      K      + A+    L+V +IP N +
Sbjct:   174 TF----CGKEAAQEAV----KL---CDSYEIRPGKHLGVCISVANN--RLFVGSIPKNKT 220

Query:   296 TEKIKELFQRHGE-VTKVVM---PPGKSGKRDFGFIHYAERSSALKAVKD--TEKYEIDG 349
              E I E F +  E +  V++   P  K   R F F+ Y +  SA +A +   + K ++ G
Sbjct:   221 KENILEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWG 280

Query:   350 QVLEVVLAKPQTDKKTE 366
              V+ V  A P  +   E
Sbjct:   281 NVVTVEWADPVEEPDPE 297


>WB|WBGene00002000 [details] [associations]
            symbol:hrp-2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000003
            "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
            development" evidence=IMP] [GO:0009792 "embryo development ending
            in birth or egg hatching" evidence=IMP] [GO:0048477 "oogenesis"
            evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
            [GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0009792 GO:GO:0006915 GO:GO:0000166
            Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
            GeneTree:ENSGT00550000074366 GO:GO:0048477 GO:GO:0003676
            GO:GO:0040035 HSSP:P09651 EMBL:AL137227 UniGene:Cel.7321
            GeneID:173086 KEGG:cel:CELE_F58D5.1 CTD:173086 NextBio:878217
            RefSeq:NP_493049.2 ProteinModelPortal:Q9NLD1 SMR:Q9NLD1
            DIP:DIP-25792N IntAct:Q9NLD1 MINT:MINT-1104835 STRING:Q9NLD1
            PRIDE:Q9NLD1 EnsemblMetazoa:F58D5.1a.1 EnsemblMetazoa:F58D5.1a.2
            EnsemblMetazoa:F58D5.1a.3 WormBase:F58D5.1a HOGENOM:HOG000020701
            InParanoid:Q9NLD1 OMA:QVLVQFK ArrayExpress:Q9NLD1 Uniprot:Q9NLD1
        Length = 611

 Score = 405 (147.6 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
 Identities = 105/323 (32%), Positives = 167/323 (51%)

Query:   106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
             G E+++G +P D  E+ L  L E  G ++++RLM D  SG S+G+AFV++ +KE A  A 
Sbjct:   199 GHEIYVGHIPTDVFEDTLVPLFEKSGKIWDLRLMMDPMSGASRGYAFVTYCNKEDAAAAA 258

Query:   166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
                   E+  GK ++ ++S    RLFIGN+PK  ++DE  + ++    GV  + +   P 
Sbjct:   259 KTYDGHEISTGKPLKVNVSIANTRLFIGNIPKTKSKDEILEELKTHAEGVVDVIVYSVPD 318

Query:   225 NPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVK 283
             N   +NRGF FV + ++  A   ++K+     +       + WA+ +  PD     S+VK
Sbjct:   319 NEKIKNRGFCFVDFIDHKTASDIKRKIAQHKIRPFNADVYVDWAEHQEEPDEDTM-SKVK 377

Query:   284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
              LY++NI +  + EK+ ELF+ +  + +V     K  K D+ FIH+ ER   LKA+++  
Sbjct:   378 VLYIRNIKEAVTEEKLNELFKEYASLDRV-----KKVK-DYAFIHFNERDDCLKAMEEWN 431

Query:   344 KYEIDGQVLEVVLAKPQTDKKTEGT-----FPYSPGLVPTHLPHAG------YGGFAGTP 392
               E++G V+E  LAKP  +KK +       F  + G    H    G      +GG AG P
Sbjct:   432 GKELEGTVVEASLAKPPQEKKKKPVMRGRGFGGAGGGAGNHGQRGGQRGGGQWGGNAG-P 490

Query:   393 YGSVGTGFGVAAGFQQPMIYGRG 415
              G     F    G+  PM +G G
Sbjct:   491 GGYYPNHFN--NGYDMPMPWGGG 511

 Score = 58 (25.5 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
 Identities = 14/30 (46%), Positives = 17/30 (56%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAGFQQPMIYG 413
             GYGG  G  YG+ G G+G   G+  P  YG
Sbjct:   511 GYGGDMG--YGAYGGGYG--GGYGGPGAYG 536

 Score = 49 (22.3 bits), Expect = 1.1e-40, Sum P(2) = 1.1e-40
 Identities = 14/32 (43%), Positives = 16/32 (50%)

Query:   386 GGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPM 417
             GG  G+P G +G G G   G   P   GRG M
Sbjct:   548 GGMRGSPRGGMGGGGGFRGG--PP---GRGGM 574

 Score = 47 (21.6 bits), Expect = 1.8e-40, Sum P(2) = 1.8e-40
 Identities = 17/40 (42%), Positives = 19/40 (47%)

Query:   384 GYGGFAGTP--YGSVGTGFGVAAGFQQPMIYGRGPMPSGM 421
             GYGG  G P  YG  G  +G   GF+  M   RG    GM
Sbjct:   524 GYGGGYGGPGAYGDFGA-YG-GGGFRGGM---RGSPRGGM 558


>ZFIN|ZDB-GENE-030131-4862 [details] [associations]
            symbol:syncrip "synaptotagmin binding, cytoplasmic
            RNA interacting protein" species:7955 "Danio rerio" [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-030131-4862 GO:GO:0000166 Gene3D:3.30.70.330
            InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
            GO:GO:0003676 EMBL:CT573058 IPI:IPI00504625
            Ensembl:ENSDART00000129870 Bgee:F1QY96 Uniprot:F1QY96
        Length = 694

 Score = 439 (159.6 bits), Expect = 6.5e-41, P = 6.5e-41
 Identities = 98/314 (31%), Positives = 177/314 (56%)

Query:   101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
             A P  G+E+F+G +P+D  E++L    E  G ++++RLM D  SG ++G+AF++F +KE 
Sbjct:   220 AQPTVGTEIFVGKIPRDLFEDELVPQFEKAGPIWDLRLMMDPLSGLNRGYAFLTFCTKEA 279

Query:   161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
             A++A+   ++ E++ GK I   +S   NRLF+G++PK+ T+++  +    V  G+  + L
Sbjct:   280 AQEAVKLCNNHEIRPGKHIGVCISVANNRLFVGSIPKSKTKEQIVEEFSKVTEGLTDVIL 339

Query:   220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
                P +  +NRGF F+ Y ++  A  +R+++++   K+ GN  T+ WADP   PD    A
Sbjct:   340 YHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNLVTVEWADPIEDPDPEVMA 399

Query:   280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
              +VK L+V+N+ ++ + E +++ F + G + +V     K  K D+ F+H+ +R  A+KA+
Sbjct:   400 -KVKVLFVRNLANSVTEEILEKAFGQFGNLERV-----KKLK-DYAFVHFNDRDGAVKAL 452

Query:   340 KDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTG 399
              +    E++G+ +E+V AKP   K+ E            +  +  YG     P  + G G
Sbjct:   453 TEMNGKELEGEHIEIVFAKPPDQKRKERKAQRQAAKTQMYDDYYYYGP-PQMPPPARGRG 511

Query:   400 FGVA-AGFQQPMIY 412
              G +  G+  P  Y
Sbjct:   512 RGASRGGYSYPPDY 525


>DICTYBASE|DDB_G0282293 [details] [associations]
            symbol:rnpA "putative RNA binding protein"
            species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0282293 GO:GO:0000166
            EMBL:AAFI02000047 GenomeReviews:CM000152_GR Gene3D:3.30.70.330
            GO:GO:0003723 EMBL:AY392444 RefSeq:XP_640243.1
            ProteinModelPortal:Q6TMI9 EnsemblProtists:DDB0214833 GeneID:8623503
            KEGG:ddi:DDB_G0282293 InParanoid:Q6TMI9 OMA:LTVNWSD Uniprot:Q6TMI9
        Length = 551

 Score = 379 (138.5 bits), Expect = 8.1e-41, Sum P(2) = 8.1e-41
 Identities = 74/195 (37%), Positives = 122/195 (62%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGD--VFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
             +E+F GG+ K  +EE+L ++     D  V E+RLMKDK +GESKGF FV F  +   +  
Sbjct:    92 NEIFFGGVNKTVNEEELLEIFNENSDNNVLEIRLMKDKLTGESKGFGFVLFNDRSMCRNV 151

Query:   165 IDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
             ID+L+ K +KGK I    SE K +LFIGN+PK+ ++++F  +  +   G+E+I+ +  P 
Sbjct:   152 IDKLNGKSIKGKIIEVKQSENKRKLFIGNLPKDLSKEQFISIFNEKTEGIESIDFLMSPD 211

Query:   225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG--NTPTISWADPKST---PDHSAAA 279
              P++NRGF+F+ Y ++  AD +R+ +  +  KL     T T++W+DP  T   P +    
Sbjct:   212 QPNKNRGFAFIEYQDHYLADTARRILTASTVKLGDYITTLTVNWSDPDPTTLDPQNDPLE 271

Query:   280 S-QVKALYVKNIPDN 293
             + ++KA+Y++N+P N
Sbjct:   272 NKEIKAIYIRNLPLN 286

 Score = 100 (40.3 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
 Identities = 42/160 (26%), Positives = 70/160 (43%)

Query:   177 TIRCSLSETKNRLFIGNVPKNWTEDEFRKVI-EDVGPGVETIELIKDPQNPSRNRGFSFV 235
             +I  S     N +F G V K   E+E  ++  E+    V  I L+KD      ++GF FV
Sbjct:    82 SISKSQRNANNEIFFGGVNKTVNEEELLEIFNENSDNNVLEIRLMKDKLT-GESKGFGFV 140

Query:   236 LYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTS 295
             L+ N+      R    N   KL+G +      + K + +        + L++ N+P + S
Sbjct:   141 LF-ND------RSMCRNVIDKLNGKSIKGKIIEVKQSENK-------RKLFIGNLPKDLS 186

Query:   296 TEKIKELFQRHGE-VTKV--VMPPGKSGK-RDFGFIHYAE 331
              E+   +F    E +  +  +M P +  K R F FI Y +
Sbjct:   187 KEQFISIFNEKTEGIESIDFLMSPDQPNKNRGFAFIEYQD 226

 Score = 72 (30.4 bits), Expect = 8.1e-41, Sum P(2) = 8.1e-41
 Identities = 17/48 (35%), Positives = 27/48 (56%)

Query:   319 SGKRDFGFIHYAERSSA--LKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364
             + KRD+ F+H   R  A  +  + + +   I+G+VL +  AKP  DKK
Sbjct:   356 NSKRDYAFVHLKTRELAEEILRIHEEKPININGKVLSLSFAKP-IDKK 402


>UNIPROTKB|E2QWK5 [details] [associations]
            symbol:A1CF "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0050821 "protein stabilization" evidence=IEA]
            [GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
            "single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
            GO:GO:0050821 GO:GO:0000166 CTD:29974 OMA:PGYAVPN GO:GO:0030895
            GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
            InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
            EMBL:AAEX03014929 RefSeq:XP_534776.2 ProteinModelPortal:E2QWK5
            Ensembl:ENSCAFT00000024715 GeneID:477581 KEGG:cfa:477581
            Uniprot:E2QWK5
        Length = 590

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 108/316 (34%), Positives = 171/316 (54%)

Query:   101 ALPPN-GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
             A PP  G E+FIG LP+D  E++L  LCE IG ++E+R+M D  +G ++G+AFV+F +++
Sbjct:    49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNRQ 107

Query:   160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
              AK AI +L++ E++ G+ +    S    RLF+G +PK    +E    ++ V  GV  + 
Sbjct:   108 EAKDAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTEGVVDVI 167

Query:   219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
             +     + +RNRGF+FV Y ++  A  +R+K+L    +L G+   + WA+P+   D    
Sbjct:   168 VYPSAADKTRNRGFAFVEYESHRTAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTM 227

Query:   279 ASQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
             +S VK LYV+N+  +TS E I++ F   + G V +V         RD+ F+H++ R  A+
Sbjct:   228 SS-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAV 280

Query:   337 KAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSV 396
             +A+K      +DG  +EV LAKP  DK +   +    G   + L    Y    G  Y   
Sbjct:   281 EAMKALNGKMLDGSPIEVTLAKP-VDKDSYVRYTRGTGGRGSML-QGEYTYSLGHVYDPT 338

Query:   397 GTGFGVAAGFQQPMIY 412
              T  G A  F  P  Y
Sbjct:   339 TTYLG-APVFYAPQAY 353


>ZFIN|ZDB-GENE-030131-9612 [details] [associations]
            symbol:si:ch211-241e15.2 "si:ch211-241e15.2"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-030131-9612 GO:GO:0000166
            Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
            GeneTree:ENSGT00550000074366 GO:GO:0003676 EMBL:BX901913
            IPI:IPI00886586 Ensembl:ENSDART00000089070 ArrayExpress:F1Q5Y6
            Bgee:F1Q5Y6 Uniprot:F1Q5Y6
        Length = 601

 Score = 398 (145.2 bits), Expect = 6.4e-39, Sum P(2) = 6.4e-39
 Identities = 89/263 (33%), Positives = 151/263 (57%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             PP G E+F+G +P+D  E++L  + E +G ++E+RLM D + G+++G+AFV +  K  AK
Sbjct:    78 PPRGCEIFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAK 136

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             +A+ EL++ E++ G+ +    S    RLFIG +PK    +E  + +  V  GV  + +  
Sbjct:   137 RAVRELNNFEIRPGRLLGVCSSVDNCRLFIGGIPKTKKREEILEEVSKVTEGVLDVIVYA 196

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
                +  +NRGF+FV Y ++  A  +R+K++    +L G+   + WA+P+   D     + 
Sbjct:   197 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 255

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
             VK LYV+N+   TS E +++ F   G+     +   K   RD+ F+H+A R  A+ A+ +
Sbjct:   256 VKILYVRNLMIETSEEILRQTF---GQFNPGCVERVKK-IRDYAFVHFASRDDAVVAMDN 311

Query:   342 TEKYEIDGQVLEVVLAKPQTDKK 364
                 EI+G  +EV LAKP  DK+
Sbjct:   312 LNGTEIEGSRIEVTLAKP-VDKE 333

 Score = 39 (18.8 bits), Expect = 6.4e-39, Sum P(2) = 6.4e-39
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query:   383 AGYGGFAGTPYGSVGTGFGVAAGFQQPM 410
             A YGG+AG  Y  +   F  AA FQ P+
Sbjct:   572 AAYGGYAG--Y--MPQAFP-AATFQMPI 594


>UNIPROTKB|E1BQR8 [details] [associations]
            symbol:A1CF "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003727
            "single-stranded RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0030895 "apolipoprotein B mRNA editing enzyme
            complex" evidence=IEA] [GO:0050821 "protein stabilization"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720 GO:GO:0050821
            GO:GO:0000166 OMA:PGYAVPN GO:GO:0030895 GO:GO:0003727
            Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 EMBL:AADN02035165
            IPI:IPI00576681 ProteinModelPortal:E1BQR8
            Ensembl:ENSGALT00000005974 Uniprot:E1BQR8
        Length = 540

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 106/318 (33%), Positives = 170/318 (53%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G E+FIG LP+D  E++L  LCE IG ++E+R+M D  +G ++G+AFV+F +K+ A+
Sbjct:    52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKQEAR 110

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
              AI +L++ E++ G+ +    S    RLF+G +PK    +E    ++ V  GV  + +  
Sbjct:   111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGVVDVIVYP 170

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
                + ++NRGF+FV Y ++  A  +R+K+L    +L G+   + WA+P+   D    +S 
Sbjct:   171 SAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229

Query:   282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
             VK LYV+N+  +T+ E I++ F   + G V +V         RD+ F+H+ +R  A+ A+
Sbjct:   230 VKILYVRNLMLSTTEETIEKEFNNIKQGAVERV------KKIRDYAFVHFNKREDAVHAM 283

Query:   340 KDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFA-GTPYGSVGT 398
             K      +DG  +EV LAKP  DK  +    Y+ G         G   +A G  Y    T
Sbjct:   284 KALNGKVLDGSPIEVTLAKP-VDK--DSYVRYTRGTGGRGAVLQGEYTYAFGHVYDPAAT 340

Query:   399 GFGVAAGFQQPMIYGRGP 416
               G A  F  P  Y   P
Sbjct:   341 YLG-APVFYAPQAYAAIP 357


>ZFIN|ZDB-GENE-060824-3 [details] [associations]
            symbol:a1cf "apobec1 complementation factor"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003725 "double-stranded RNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR001159 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50137 SMART:SM00360
            InterPro:IPR014720 ZFIN:ZDB-GENE-060824-3 GO:GO:0000166
            Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0005622
            GO:GO:0003725 EMBL:BX248126 IPI:IPI00486366
            Ensembl:ENSDART00000010358 Bgee:E7F6B7 Uniprot:E7F6B7
        Length = 588

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 103/317 (32%), Positives = 165/317 (52%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  GSE+F+G LP+D  E++L  LCE  G ++EVR+M D  +G ++G+AFV+F +K+ AK
Sbjct:    52 PERGSEIFVGKLPRDLFEDELVPLCEKFGKIYEVRMMMDF-NGNNRGYAFVTFSTKQEAK 110

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
              A+ +L++ E++ G+ +    S    RLF+G +PK    +E    ++ V  GV  + +  
Sbjct:   111 NAMKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILAEMKKVTDGVLDVIVYP 170

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
                + ++NRGF+FV Y  +  A  +R+K+L    +L G+   + WA+P+   D    A+ 
Sbjct:   171 SAADKAKNRGFAFVEYETHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMAT- 229

Query:   282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
             VK LYV+N+   T+ E I++ F   + G V +V         RD+ F+H+++R  A+ A+
Sbjct:   230 VKILYVRNLMLPTTEETIEKEFNSIKPGAVERV------KKIRDYAFVHFSQREDAINAM 283

Query:   340 KDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTG 399
                    IDG  +EV LAKP  DK +   +    G     +    Y    G  Y      
Sbjct:   284 NALNGKVIDGSPIEVTLAKP-VDKDSYVRYTRGTGGRGGTVLQGDYAYTVGQMYDPSAAY 342

Query:   400 FGVAAGFQQPMIYGRGP 416
              G A  F  P  Y   P
Sbjct:   343 LG-APIFYAPHAYATIP 358


>UNIPROTKB|E1BB24 [details] [associations]
            symbol:RBM46 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
            CTD:166863 OMA:YPGTKLT EMBL:DAAA02044105 EMBL:DAAA02044106
            IPI:IPI00711895 RefSeq:NP_001179648.1 UniGene:Bt.52151
            ProteinModelPortal:E1BB24 Ensembl:ENSBTAT00000002223 GeneID:532175
            KEGG:bta:532175 NextBio:20875624 Uniprot:E1BB24
        Length = 533

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 96/266 (36%), Positives = 151/266 (56%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             PP G EVF+G +P+D  E++L  + E  G ++E RLM +  SGE++G+AFV + +KE A+
Sbjct:    57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQ 115

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
              AI  L++ E++ GK I   +S    RLFIG +PK   ++E    ++ V  GV  + +  
Sbjct:   116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
                + ++NRGF+FV Y ++  A  +R+K++   F+L G+T  + WADP+   D      +
Sbjct:   176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETM-QR 234

Query:   282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
             VK LYV+N+  +T+ E IK  F +   G V +V         RD+ F+H+  R  A+ A+
Sbjct:   235 VKVLYVRNLMISTTEETIKAEFNKFKPGSVERV------KKLRDYAFVHFFNREDAVAAM 288

Query:   340 KDTEKYEIDGQVLEVVLAKPQTDKKT 365
                    IDG  +EV LAKP   + T
Sbjct:   289 SVMNGKCIDGASIEVTLAKPVNKENT 314


>UNIPROTKB|E2R8F4 [details] [associations]
            symbol:RBM46 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
            CTD:166863 OMA:YPGTKLT EMBL:AAEX03010068 RefSeq:XP_532699.1
            ProteinModelPortal:E2R8F4 Ensembl:ENSCAFT00000013439 GeneID:475475
            KEGG:cfa:475475 NextBio:20851314 Uniprot:E2R8F4
        Length = 533

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 96/266 (36%), Positives = 151/266 (56%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             PP G EVF+G +P+D  E++L  + E  G ++E RLM +  SGE++G+AFV + +KE A+
Sbjct:    57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQ 115

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
              AI  L++ E++ GK I   +S    RLFIG +PK   ++E    ++ V  GV  + +  
Sbjct:   116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
                + ++NRGF+FV Y ++  A  +R+K++   F+L G+T  + WADP+   D      +
Sbjct:   176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETM-QR 234

Query:   282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
             VK LYV+N+  +T+ E IK  F +   G V +V         RD+ F+H+  R  A+ A+
Sbjct:   235 VKVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAM 288

Query:   340 KDTEKYEIDGQVLEVVLAKPQTDKKT 365
                    IDG  +EV LAKP   + T
Sbjct:   289 SVMNGKCIDGASIEVTLAKPVNKENT 314


>UNIPROTKB|E2RTF9 [details] [associations]
            symbol:RBM46 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
            EMBL:AAEX03010068 Ensembl:ENSCAFT00000037016 Uniprot:E2RTF9
        Length = 485

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 96/266 (36%), Positives = 151/266 (56%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             PP G EVF+G +P+D  E++L  + E  G ++E RLM +  SGE++G+AFV + +KE A+
Sbjct:    57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQ 115

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
              AI  L++ E++ GK I   +S    RLFIG +PK   ++E    ++ V  GV  + +  
Sbjct:   116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
                + ++NRGF+FV Y ++  A  +R+K++   F+L G+T  + WADP+   D      +
Sbjct:   176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETM-QR 234

Query:   282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
             VK LYV+N+  +T+ E IK  F +   G V +V         RD+ F+H+  R  A+ A+
Sbjct:   235 VKVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAM 288

Query:   340 KDTEKYEIDGQVLEVVLAKPQTDKKT 365
                    IDG  +EV LAKP   + T
Sbjct:   289 SVMNGKCIDGASIEVTLAKPVNKENT 314


>UNIPROTKB|B3KWU8 [details] [associations]
            symbol:RBM46 "Putative uncharacterized protein MGC27016"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
            InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
            GO:GO:0003676 EMBL:CH471056 CTD:166863 RefSeq:NP_659416.1
            UniGene:Hs.133095 GeneID:166863 KEGG:hsa:166863 HGNC:HGNC:28401
            PharmGKB:PA162400810 GenomeRNAi:166863 NextBio:88637 EMBL:AC009567
            EMBL:AK125877 IPI:IPI00967774 SMR:B3KWU8 STRING:B3KWU8
            Ensembl:ENST00000510397 UCSC:uc003iop.1 Uniprot:B3KWU8
        Length = 470

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 96/266 (36%), Positives = 151/266 (56%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             PP G EVF+G +P+D  E++L  + E  G ++E RLM +  SGE++G+AFV + +KE A+
Sbjct:    57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQ 115

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
              AI  L++ E++ GK I   +S    RLFIG +PK   ++E    ++ V  GV  + +  
Sbjct:   116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
                + ++NRGF+FV Y ++  A  +R+K++   F+L G+T  + WADP+   D      +
Sbjct:   176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETM-QR 234

Query:   282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
             VK LYV+N+  +T+ E IK  F +   G V +V         RD+ F+H+  R  A+ A+
Sbjct:   235 VKVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAM 288

Query:   340 KDTEKYEIDGQVLEVVLAKPQTDKKT 365
                    IDG  +EV LAKP   + T
Sbjct:   289 SVMNGKCIDGASIEVTLAKPVNKENT 314


>UNIPROTKB|B4DZ27 [details] [associations]
            symbol:RBM46 "Probable RNA-binding protein 46" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
            InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
            GO:GO:0003676 UniGene:Hs.133095 HGNC:HGNC:28401 EMBL:AC009567
            EMBL:AK302720 IPI:IPI00967437 SMR:B4DZ27 STRING:B4DZ27
            Ensembl:ENST00000514866 UCSC:uc011cim.1 Uniprot:B4DZ27
        Length = 485

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 96/266 (36%), Positives = 151/266 (56%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             PP G EVF+G +P+D  E++L  + E  G ++E RLM +  SGE++G+AFV + +KE A+
Sbjct:    57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQ 115

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
              AI  L++ E++ GK I   +S    RLFIG +PK   ++E    ++ V  GV  + +  
Sbjct:   116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
                + ++NRGF+FV Y ++  A  +R+K++   F+L G+T  + WADP+   D      +
Sbjct:   176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETM-QR 234

Query:   282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
             VK LYV+N+  +T+ E IK  F +   G V +V         RD+ F+H+  R  A+ A+
Sbjct:   235 VKVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAM 288

Query:   340 KDTEKYEIDGQVLEVVLAKPQTDKKT 365
                    IDG  +EV LAKP   + T
Sbjct:   289 SVMNGKCIDGASIEVTLAKPVNKENT 314


>UNIPROTKB|Q8TBY0 [details] [associations]
            symbol:RBM46 "Probable RNA-binding protein 46" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
            InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
            GO:GO:0003723 EMBL:CH471056 CTD:166863 eggNOG:NOG235650
            EMBL:BC028588 IPI:IPI00152304 RefSeq:NP_659416.1 UniGene:Hs.133095
            HSSP:Q9NQ94 ProteinModelPortal:Q8TBY0 SMR:Q8TBY0 STRING:Q8TBY0
            PhosphoSite:Q8TBY0 DMDM:74760436 PaxDb:Q8TBY0 PRIDE:Q8TBY0
            Ensembl:ENST00000281722 GeneID:166863 KEGG:hsa:166863
            UCSC:uc003ioo.3 GeneCards:GC04P155702 HGNC:HGNC:28401 HPA:HPA050601
            neXtProt:NX_Q8TBY0 PharmGKB:PA162400810 InParanoid:Q8TBY0
            OMA:YPGTKLT PhylomeDB:Q8TBY0 GenomeRNAi:166863 NextBio:88637
            ArrayExpress:Q8TBY0 Bgee:Q8TBY0 CleanEx:HS_RBM46
            Genevestigator:Q8TBY0 Uniprot:Q8TBY0
        Length = 533

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 96/266 (36%), Positives = 151/266 (56%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             PP G EVF+G +P+D  E++L  + E  G ++E RLM +  SGE++G+AFV + +KE A+
Sbjct:    57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQ 115

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
              AI  L++ E++ GK I   +S    RLFIG +PK   ++E    ++ V  GV  + +  
Sbjct:   116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
                + ++NRGF+FV Y ++  A  +R+K++   F+L G+T  + WADP+   D      +
Sbjct:   176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETM-QR 234

Query:   282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
             VK LYV+N+  +T+ E IK  F +   G V +V         RD+ F+H+  R  A+ A+
Sbjct:   235 VKVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAM 288

Query:   340 KDTEKYEIDGQVLEVVLAKPQTDKKT 365
                    IDG  +EV LAKP   + T
Sbjct:   289 SVMNGKCIDGASIEVTLAKPVNKENT 314


>UNIPROTKB|F1RYR7 [details] [associations]
            symbol:RBM46 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
            CTD:166863 OMA:YPGTKLT EMBL:CU855658 RefSeq:XP_003129173.1
            UniGene:Ssc.94502 Ensembl:ENSSSCT00000009851 GeneID:100513804
            KEGG:ssc:100513804 Uniprot:F1RYR7
        Length = 533

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 96/266 (36%), Positives = 151/266 (56%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             PP G EVF+G +P+D  E++L  + E  G ++E RLM +  SGE++G+AFV + +KE A+
Sbjct:    57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQ 115

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
              AI  L++ E++ GK I   +S    RLFIG +PK   ++E    ++ V  GV  + +  
Sbjct:   116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
                + ++NRGF+FV Y ++  A  +R+K++   F+L G+T  + WADP+   D      +
Sbjct:   176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETM-QR 234

Query:   282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
             VK LYV+N+  +T+ E IK  F +   G V +V         RD+ F+H+  R  A+ A+
Sbjct:   235 VKVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAM 288

Query:   340 KDTEKYEIDGQVLEVVLAKPQTDKKT 365
                    IDG  +EV LAKP   + T
Sbjct:   289 SVMNGKCIDGASIEVTLAKPVNKENT 314


>MGI|MGI:3645057 [details] [associations]
            symbol:Rbm46 "RNA binding motif protein 46" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:3645057 GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
            InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
            HOGENOM:HOG000186083 GO:GO:0003723 CTD:166863 eggNOG:NOG235650
            OrthoDB:EOG4FR0RW OMA:YPGTKLT EMBL:AC158935 IPI:IPI00672754
            RefSeq:NP_001139800.1 UniGene:Mm.265114 ProteinModelPortal:P86049
            SMR:P86049 PhosphoSite:P86049 PaxDb:P86049 PRIDE:P86049
            Ensembl:ENSMUST00000048647 GeneID:633285 KEGG:mmu:633285
            UCSC:uc012cqu.1 NextBio:422664 Bgee:P86049 Genevestigator:P86049
            Uniprot:P86049
        Length = 533

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 96/266 (36%), Positives = 151/266 (56%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             PP G EVF+G +P+D  E++L  + E  G ++E RLM +  SGE++G+AFV + +KE A+
Sbjct:    57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQ 115

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
              AI  L++ E++ GK I   +S    RLFIG +PK   ++E    ++ V  GV  + +  
Sbjct:   116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
                + ++NRGF+FV Y ++  A  +R+K++   F+L G+T  + WADP+   D      +
Sbjct:   176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETM-QR 234

Query:   282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
             VK LYV+N+  +T+ E IK  F +   G V +V         RD+ F+H+  R  A+ A+
Sbjct:   235 VKVLYVRNLMISTTEETIKAEFSKFKPGAVERV------KKLRDYAFVHFFHREDAVAAM 288

Query:   340 KDTEKYEIDGQVLEVVLAKPQTDKKT 365
                    IDG  +EV LAKP   + T
Sbjct:   289 SVMNGKCIDGASIEVTLAKPVNKENT 314


>RGD|1560205 [details] [associations]
            symbol:Rbm46 "RNA binding motif protein 46" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1560205 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
            CTD:166863 OrthoDB:EOG4FR0RW OMA:YPGTKLT IPI:IPI00368354
            RefSeq:NP_001129189.1 UniGene:Rn.145040 ProteinModelPortal:D3ZAE2
            Ensembl:ENSRNOT00000035846 GeneID:310548 KEGG:rno:310548
            UCSC:RGD:1560205 NextBio:662134 Uniprot:D3ZAE2
        Length = 533

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 96/266 (36%), Positives = 151/266 (56%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             PP G EVF+G +P+D  E++L  + E  G ++E RLM +  SGE++G+AFV + +KE A+
Sbjct:    57 PPRGCEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQ 115

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
              AI  L++ E++ GK I   +S    RLFIG +PK   ++E    ++ V  GV  + +  
Sbjct:   116 LAIRILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYP 175

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
                + ++NRGF+FV Y ++  A  +R+K++   F+L G+T  + WADP+   D      +
Sbjct:   176 SATDKTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEETM-QR 234

Query:   282 VKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
             VK LYV+N+  +T+ E IK  F +   G V +V         RD+ F+H+  R  A+ A+
Sbjct:   235 VKVLYVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAM 288

Query:   340 KDTEKYEIDGQVLEVVLAKPQTDKKT 365
                    IDG  +EV LAKP   + T
Sbjct:   289 SVMNGKCIDGASIEVTLAKPVNKENT 314


>UNIPROTKB|E1BVJ9 [details] [associations]
            symbol:RBM47 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
            CTD:54502 OMA:IGPNREY EMBL:AADN02031225 IPI:IPI00588745
            RefSeq:XP_003641292.1 UniGene:Gga.25965 ProteinModelPortal:E1BVJ9
            Ensembl:ENSGALT00000023079 GeneID:770355 KEGG:gga:770355
            Uniprot:E1BVJ9
        Length = 597

 Score = 402 (146.6 bits), Expect = 2.9e-37, P = 2.9e-37
 Identities = 90/263 (34%), Positives = 151/263 (57%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             PP G EVF+G +P+D  E++L  + E +G ++E+RLM D + G+++G+AFV +  K  AK
Sbjct:    67 PPRGCEVFVGKIPRDVYEDELVPVFESVGRIYEMRLMMDFD-GKNRGYAFVMYTQKHEAK 125

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             +A+ EL++ E++ G+ +    S    RLFIG +PK    +E  + I  V  GV  + +  
Sbjct:   126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
                +  +NRGF+FV Y ++  A  +R+K++    +L G+   + WA+P+   D     + 
Sbjct:   186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
             VK LYV+N+   T+ + IK++F   G+     +   K   RD+ F+H+  R  A+ A+ +
Sbjct:   245 VKILYVRNLMIETTEDTIKKVF---GQFNPGCVERVKK-IRDYAFVHFTTREDAIHAMNN 300

Query:   342 TEKYEIDGQVLEVVLAKPQTDKK 364
                 E++G  LEV LAKP  DK+
Sbjct:   301 LNGVELEGSCLEVTLAKP-VDKE 322


>UNIPROTKB|E2QVD3 [details] [associations]
            symbol:SYNCRIP "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GO:GO:0003676 ProteinModelPortal:E2QVD3
            Ensembl:ENSCAFT00000004869 Uniprot:E2QVD3
        Length = 622

 Score = 400 (145.9 bits), Expect = 7.2e-37, P = 7.2e-37
 Identities = 86/239 (35%), Positives = 147/239 (61%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G+E+F+G +P+D  E++L  L E  G ++++RLM D  +G ++G+AFV+F +KE A+
Sbjct:   158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             +A+   ++ E++ GK I   +S   NRLF+G++PK+ T+++  +    V  G+  + L  
Sbjct:   218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
              P +  +NRGF F+ Y ++  A  +R+++++   K+ GN  T+ WADP   PD    A +
Sbjct:   278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336

Query:   282 VKALYVKNIPDNTSTEKIKE-LFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
             VK L+V+N+  NT TE+I E  F + G++ +V     K  K D+ FIH+ ER  A+K +
Sbjct:   337 VKVLFVRNLA-NTVTEEILEKAFSQFGKLERV-----KKLK-DYAFIHFDERDGAVKVI 388


>ZFIN|ZDB-GENE-061013-298 [details] [associations]
            symbol:rbm46 "RNA binding motif protein 46"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0003723 "RNA binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-061013-298
            GO:GO:0000166 HOVERGEN:HBG051917 Gene3D:3.30.70.330
            InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
            GO:GO:0003723 EMBL:BC124720 IPI:IPI00610686 RefSeq:NP_001073493.2
            UniGene:Dr.132665 ProteinModelPortal:Q08BH5 SMR:Q08BH5
            GeneID:566042 KEGG:dre:566042 CTD:166863 eggNOG:NOG235650
            OrthoDB:EOG4FR0RW NextBio:20887996 ArrayExpress:Q08BH5
            Uniprot:Q08BH5
        Length = 510

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 97/288 (33%), Positives = 161/288 (55%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             PP G EVF+G +P+D  E++L  + E  G ++E RLM +  SGE++G+AFV + ++E A+
Sbjct:    41 PPRGREVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMMEF-SGENRGYAFVMYTTREKAQ 99

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             +AI  L + E++ GK I   +S    RLFIG++PK+  ++E ++ +  V  GV  + +  
Sbjct:   100 RAIQLLDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKVTEGVMDVIVYP 159

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
                +  +NRGF+FV Y ++  A  +R+K++   F+L G+T  + WA+P+   D      +
Sbjct:   160 SAVDRMKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQVDWAEPEKELDEETM-QR 218

Query:   282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
             V+ LYV+N+  +T+ E ++  F   + G V +V          D+ FIH+  R  AL A+
Sbjct:   219 VRVLYVRNLMLSTTEETLRSEFSQLKPGSVERV------KKLTDYAFIHFYNREDALTAL 272

Query:   340 KDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAG-YG 386
             +      IDG  +EV LAKP +    +G   + P      +  AG YG
Sbjct:   273 ESMNGKVIDGSPIEVTLAKPASK---DGNKRFGPRNCHNGVTAAGGYG 317


>UNIPROTKB|F1Q212 [details] [associations]
            symbol:RBM47 "RNA-binding protein 47" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
            OMA:IGPNREY EMBL:AAEX03002529 EMBL:AAEX03002530
            Ensembl:ENSCAFT00000025193 Uniprot:F1Q212
        Length = 592

 Score = 395 (144.1 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 96/295 (32%), Positives = 160/295 (54%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G EVF+G +P+D  E++L  + E +G ++E+RLM D + G+++G+AFV++  K  AK
Sbjct:    69 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVTYCHKGEAK 127

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             +A+ EL++ E++ G+ +    S    RLFIG +PK    +E  + I  V  GV  + +  
Sbjct:   128 RAVRELNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 187

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
                +  +NRGF+FV Y ++  A  +R+K++    +L G+   + WA+P+   D     + 
Sbjct:   188 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 246

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
             VK LYV+N+   T+ + IK+ F   G+     +   K   RD+ F+H+A R  A+ A+  
Sbjct:   247 VKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKK-IRDYAFVHFASREDAVLAMNS 302

Query:   342 TEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSP---GLVPTHLPHAGYGGFAGTPY 393
                 E++G  LEV LAKP  DK+    +  +    G      P  GY  ++  PY
Sbjct:   303 LNGTELEGSCLEVTLAKP-VDKEQYSRYQKAAKGGGAAEAAAPQPGYV-YSCDPY 355


>UNIPROTKB|Q9XSR3 [details] [associations]
            symbol:RBM47 "RNA-binding protein 47" species:9615 "Canis
            lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            eggNOG:NOG258596 HOVERGEN:HBG051917 Gene3D:3.30.70.330
            InterPro:IPR006535 TIGRFAMs:TIGR01648 HOGENOM:HOG000186083
            GO:GO:0003723 HSSP:Q9NQ94 EMBL:AJ388555 RefSeq:NP_001002955.1
            UniGene:Cfa.124 ProteinModelPortal:Q9XSR3 SMR:Q9XSR3 GeneID:403423
            KEGG:cfa:403423 CTD:54502 InParanoid:Q9XSR3 OrthoDB:EOG4THVTH
            NextBio:20816943 Uniprot:Q9XSR3
        Length = 592

 Score = 395 (144.1 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 96/295 (32%), Positives = 160/295 (54%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G EVF+G +P+D  E++L  + E +G ++E+RLM D + G+++G+AFV++  K  AK
Sbjct:    69 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVTYCHKGEAK 127

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             +A+ EL++ E++ G+ +    S    RLFIG +PK    +E  + I  V  GV  + +  
Sbjct:   128 RAVRELNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 187

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
                +  +NRGF+FV Y ++  A  +R+K++    +L G+   + WA+P+   D     + 
Sbjct:   188 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 246

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
             VK LYV+N+   T+ + IK+ F   G+     +   K   RD+ F+H+A R  A+ A+  
Sbjct:   247 VKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKK-IRDYAFVHFASREDAVLAMNS 302

Query:   342 TEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSP---GLVPTHLPHAGYGGFAGTPY 393
                 E++G  LEV LAKP  DK+    +  +    G      P  GY  ++  PY
Sbjct:   303 LNGTELEGSCLEVTLAKP-VDKEQYSRYQKAAKGGGAAEAAAPQPGYV-YSCDPY 355


>UNIPROTKB|E1BV69 [details] [associations]
            symbol:RBM46 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
            OMA:YPGTKLT EMBL:AADN02016545 IPI:IPI00595715
            ProteinModelPortal:E1BV69 Ensembl:ENSGALT00000015094 Uniprot:E1BV69
        Length = 467

 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 93/264 (35%), Positives = 152/264 (57%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             PP G EVF+G +P++  E++L  L E  G ++E+RLM +  SGE++GFAFV + +KE A+
Sbjct:    57 PPRGCEVFVGKIPRNIYEDELVPLFERAGKIYELRLMMEF-SGENRGFAFVMYTTKEDAQ 115

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
              AI  L++ E++ G+ I   +S    RLFIG +P+   ++E  K ++ +  GV  + +  
Sbjct:   116 LAIKILNNYEIRPGRFIGVCISLDNCRLFIGAIPREKKKEEILKEMKRITEGVVDVIVCP 175

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
             D  + ++NRGF+FV Y ++  A  +R+++L   F+L G    + WA P+   D +    +
Sbjct:   176 DATDRTKNRGFAFVEYESHRAAAMARRRLLPGTFQLWGRAVQVDWACPEKEVD-AETMRR 234

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
             VK LYV+N+  +T+ + IK  F +     +VV    K   RD+ F+H+  R  A+ A+  
Sbjct:   235 VKVLYVRNLMISTTEDTIKAEFNKFKP--RVVERVKKL--RDYAFVHFYNREDAVAAMSI 290

Query:   342 TEKYEIDGQVLEVVLAKPQTDKKT 365
                  IDG  +EV LAKP   + T
Sbjct:   291 MNGKCIDGASIEVTLAKPVNKEST 314


>UNIPROTKB|F6RYN2 [details] [associations]
            symbol:RBM47 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
            CTD:54502 OMA:IGPNREY EMBL:DAAA02017489 IPI:IPI00690190
            RefSeq:NP_001192963.1 UniGene:Bt.22438 Ensembl:ENSBTAT00000003040
            GeneID:540831 KEGG:bta:540831 NextBio:20878859 Uniprot:F6RYN2
        Length = 591

 Score = 391 (142.7 bits), Expect = 4.9e-36, P = 4.9e-36
 Identities = 90/263 (34%), Positives = 150/263 (57%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G EVF+G +P+D  E++L  + E +G ++E+RLM D + G+++G+AFV +  K  AK
Sbjct:    67 PQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAK 125

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             +A+ EL++ E++ G+ +    S    RLFIG +PK    +E  + I  V  GV  + +  
Sbjct:   126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
                +  +NRGF+FV Y ++  A  +R+K++    +L G+   + WA+P+   D     + 
Sbjct:   186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
             VK LYV+N+   T+ + IK+ F   G+     +   K   RD+ F+H+A R  A+ A+ +
Sbjct:   245 VKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKK-IRDYAFVHFASREDAVHAMNN 300

Query:   342 TEKYEIDGQVLEVVLAKPQTDKK 364
                 E++G  LEV LAKP  DK+
Sbjct:   301 LNGTELEGSCLEVTLAKP-VDKE 322


>UNIPROTKB|F1S4H0 [details] [associations]
            symbol:RBM47 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
            OMA:IGPNREY EMBL:CU929922 RefSeq:XP_003128987.3
            Ensembl:ENSSSCT00000009623 GeneID:100513606 KEGG:ssc:100513606
            Uniprot:F1S4H0
        Length = 591

 Score = 391 (142.7 bits), Expect = 4.9e-36, P = 4.9e-36
 Identities = 90/263 (34%), Positives = 150/263 (57%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G EVF+G +P+D  E++L  + E +G ++E+RLM D + G+++G+AFV +  K  AK
Sbjct:    67 PQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKNEAK 125

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             +A+ EL++ E++ G+ +    S    RLFIG +PK    +E  + I  V  GV  + +  
Sbjct:   126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
                +  +NRGF+FV Y ++  A  +R+K++    +L G+   + WA+P+   D     + 
Sbjct:   186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
             VK LYV+N+   T+ + IK+ F   G+     +   K   RD+ F+H+A R  A+ A+ +
Sbjct:   245 VKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKK-IRDYAFVHFASREDAVHAMNN 300

Query:   342 TEKYEIDGQVLEVVLAKPQTDKK 364
                 E++G  LEV LAKP  DK+
Sbjct:   301 LNGTELEGSCLEVTLAKP-VDKE 322


>TAIR|locus:2146564 [details] [associations]
            symbol:AT5G28390 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            IPI:IPI00530379 RefSeq:NP_198191.2 UniGene:At.49421
            ProteinModelPortal:F4K739 SMR:F4K739 EnsemblPlants:AT5G28390.1
            GeneID:832924 KEGG:ath:AT5G28390 PhylomeDB:F4K739 Uniprot:F4K739
        Length = 180

 Score = 313 (115.2 bits), Expect = 5.7e-36, Sum P(2) = 5.7e-36
 Identities = 55/101 (54%), Positives = 80/101 (79%)

Query:   250 MLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV 309
             M N +FKLD N PT+SWA+ +S  +  ++ASQVKALY+KN+P + + E++K LF+ HG++
Sbjct:     1 MSNPSFKLDDNAPTVSWAESRSGGEGDSSASQVKALYIKNLPRDITQERLKALFEHHGKI 60

Query:   310 TKVVMPPGKSGKRD--FGFIHYAERSSALKAVKDTEKYEID 348
              KVV+PP K GK D  +GF+HYAER+S ++A+K+TE+YEID
Sbjct:    61 LKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEID 101

 Score = 91 (37.1 bits), Expect = 5.7e-36, Sum P(2) = 5.7e-36
 Identities = 16/35 (45%), Positives = 25/35 (71%)

Query:   403 AAGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGYVL 437
             A+ + QP+++  G    GM M+P++LPDG+I YVL
Sbjct:   102 ASAYSQPLMHAGGHAAGGMSMMPIMLPDGRIRYVL 136

 Score = 76 (31.8 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
 Identities = 27/102 (26%), Positives = 46/102 (45%)

Query:    72 DDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIG 131
             DD+ P V   E  + S GE +    +Q+ AL       +I  LP+D ++E L+ L E  G
Sbjct:     9 DDNAPTVSWAE--SRSGGEGDSSA-SQVKAL-------YIKNLPRDITQERLKALFEHHG 58

Query:   132 DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL 173
              + +V +   K   E   + FV +  +    +A+      E+
Sbjct:    59 KILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNTERYEI 100

 Score = 56 (24.8 bits), Expect = 0.00049, Sum P(2) = 0.00049
 Identities = 15/58 (25%), Positives = 31/58 (53%)

Query:   181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRG-FSFVLY 237
             S S+ K  L+I N+P++ T++  + + E  G   + ++++  P  P +    + FV Y
Sbjct:    29 SASQVK-ALYIKNLPRDITQERLKALFEHHG---KILKVVIPPAKPGKEDSRYGFVHY 82


>UNIPROTKB|B7Z8Z7 [details] [associations]
            symbol:RBM47 "cDNA FLJ51456, moderately similar to APOBEC1
            complementation factor" species:9606 "Homo sapiens" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
            EMBL:AC112717 UniGene:Hs.518727 HGNC:HGNC:30358 ChiTaRS:RBM47
            EMBL:AK304206 IPI:IPI00964320 SMR:B7Z8Z7 STRING:B7Z8Z7
            Ensembl:ENST00000514014 Uniprot:B7Z8Z7
        Length = 555

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 89/263 (33%), Positives = 149/263 (56%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G EVF+G +P+D  E++L  + E +G ++E+RLM D + G+++G+AFV +  K  AK
Sbjct:    29 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 87

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             +A+ EL++ E++ G+ +    S    RLFIG +PK    +E  + I  V  GV  + +  
Sbjct:    88 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 147

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
                +  +NRGF+FV Y ++  A  +R+K++    +L G+   + WA+P+   D     + 
Sbjct:   148 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 206

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
             VK LYV+N+   T+ + IK+ F   G+     +   K   RD+ F+H+  R  A+ A+ +
Sbjct:   207 VKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKK-IRDYAFVHFTSREDAVHAMNN 262

Query:   342 TEKYEIDGQVLEVVLAKPQTDKK 364
                 E++G  LEV LAKP  DK+
Sbjct:   263 LNGTELEGSCLEVTLAKP-VDKE 284


>UNIPROTKB|D6R9D6 [details] [associations]
            symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
            EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965625
            ProteinModelPortal:D6R9D6 SMR:D6R9D6 Ensembl:ENST00000510871
            ArrayExpress:D6R9D6 Bgee:D6R9D6 Uniprot:D6R9D6
        Length = 393

 Score = 387 (141.3 bits), Expect = 7.2e-36, P = 7.2e-36
 Identities = 89/263 (33%), Positives = 149/263 (56%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G EVF+G +P+D  E++L  + E +G ++E+RLM D + G+++G+AFV +  K  AK
Sbjct:    67 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 125

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             +A+ EL++ E++ G+ +    S    RLFIG +PK    +E  + I  V  GV  + +  
Sbjct:   126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
                +  +NRGF+FV Y ++  A  +R+K++    +L G+   + WA+P+   D     + 
Sbjct:   186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
             VK LYV+N+   T+ + IK+ F   G+     +   K   RD+ F+H+  R  A+ A+ +
Sbjct:   245 VKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKK-IRDYAFVHFTSREDAVHAMNN 300

Query:   342 TEKYEIDGQVLEVVLAKPQTDKK 364
                 E++G  LEV LAKP  DK+
Sbjct:   301 LNGTELEGSCLEVTLAKP-VDKE 322


>MGI|MGI:2384294 [details] [associations]
            symbol:Rbm47 "RNA binding motif protein 47" species:10090
            "Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:2384294 GO:GO:0005634 GO:GO:0000166
            eggNOG:NOG258596 HOVERGEN:HBG051917 Gene3D:3.30.70.330
            InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
            HOGENOM:HOG000186083 GO:GO:0003723 HSSP:Q9NQ94 CTD:54502
            OrthoDB:EOG4THVTH OMA:IGPNREY EMBL:AK035620 EMBL:AK085733
            EMBL:AK142584 EMBL:AK170082 EMBL:BC013481 EMBL:BC034195
            EMBL:BC112902 IPI:IPI00128377 IPI:IPI00265759 RefSeq:NP_001120854.1
            RefSeq:NP_620704.1 RefSeq:NP_848541.2 UniGene:Mm.36863
            UniGene:Mm.400185 UniGene:Mm.426431 ProteinModelPortal:Q91WT8
            SMR:Q91WT8 PhosphoSite:Q91WT8 PaxDb:Q91WT8 PRIDE:Q91WT8
            Ensembl:ENSMUST00000094756 Ensembl:ENSMUST00000094757
            Ensembl:ENSMUST00000113724 Ensembl:ENSMUST00000113726
            Ensembl:ENSMUST00000167950 GeneID:245945 KEGG:mmu:245945
            UCSC:uc008xok.2 UCSC:uc008xop.2 InParanoid:Q91WT8 NextBio:387022
            Bgee:Q91WT8 CleanEx:MM_RBM47 Genevestigator:Q91WT8 Uniprot:Q91WT8
        Length = 590

 Score = 388 (141.6 bits), Expect = 1.1e-35, P = 1.1e-35
 Identities = 90/263 (34%), Positives = 148/263 (56%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G EVF+G +P+D  E++L  + E +G ++E+RLM D + G+++G+AFV +  K  AK
Sbjct:    67 PQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 125

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             +A+ EL++ E++ G+ +    S    RLFIG +PK     E  + I  V  GV  + +  
Sbjct:   126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYA 185

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
                +  +NRGF+FV Y ++  A  +R+K++    +L G+   + WA+P+   D     + 
Sbjct:   186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQT- 244

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
             VK LYV+N+   T+ E IK+ F   G+     +   K   RD+ F+H+  R  A+ A+ +
Sbjct:   245 VKILYVRNLMIETTEETIKKSF---GQFNPGCVERVKK-IRDYAFVHFTSREDAVHAMNN 300

Query:   342 TEKYEIDGQVLEVVLAKPQTDKK 364
                 E++G  LEV LAKP  DK+
Sbjct:   301 LNGTELEGSCLEVTLAKP-VDKE 322


>RGD|1359713 [details] [associations]
            symbol:Rbm47 "RNA binding motif protein 47" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1359713 GO:GO:0005634
            GO:GO:0000166 eggNOG:NOG258596 HOVERGEN:HBG051917
            Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
            GeneTree:ENSGT00550000074366 HOGENOM:HOG000186083 GO:GO:0003723
            HSSP:Q9NQ94 CTD:54502 OrthoDB:EOG4THVTH OMA:IGPNREY EMBL:BC081995
            IPI:IPI00196127 RefSeq:NP_001005882.1 UniGene:Rn.38803
            ProteinModelPortal:Q66H68 SMR:Q66H68 PRIDE:Q66H68
            Ensembl:ENSRNOT00000003327 GeneID:305340 KEGG:rno:305340
            UCSC:RGD:1359713 InParanoid:Q66H68 NextBio:654387
            Genevestigator:Q66H68 Uniprot:Q66H68
        Length = 590

 Score = 387 (141.3 bits), Expect = 1.4e-35, P = 1.4e-35
 Identities = 90/263 (34%), Positives = 147/263 (55%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G EVF+G +P+D  E++L  + E +G ++E+RLM D + G+++G+AFV +  K  AK
Sbjct:    67 PQRGCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 125

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             +A+ EL++ E++ G+ +    S    RLFIG +PK     E  + I  V  GV  + +  
Sbjct:   126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYA 185

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
                +  +NRGF+FV Y ++  A  +R+K++    +L G+   + WA+P+   D     + 
Sbjct:   186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQT- 244

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
             VK LYV+N+   T+ E IK  F   G+     +   K   RD+ F+H+  R  A+ A+ +
Sbjct:   245 VKILYVRNLMIETTEETIKRSF---GQFNPGCVERVKK-IRDYAFVHFTSREDAVHAMNN 300

Query:   342 TEKYEIDGQVLEVVLAKPQTDKK 364
                 E++G  LEV LAKP  DK+
Sbjct:   301 LNGTELEGSCLEVTLAKP-VDKE 322


>UNIPROTKB|A0AV96 [details] [associations]
            symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 eggNOG:NOG258596
            HOVERGEN:HBG051917 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003723 CTD:54502
            OrthoDB:EOG4THVTH EMBL:AF261889 EMBL:AF262323 EMBL:AK000280
            EMBL:AC098869 EMBL:AC112717 EMBL:BC034402 EMBL:BC126261
            IPI:IPI00005042 IPI:IPI00169342 RefSeq:NP_001092104.1
            RefSeq:NP_061900.2 UniGene:Hs.518727 PDB:2DIS PDBsum:2DIS
            ProteinModelPortal:A0AV96 SMR:A0AV96 IntAct:A0AV96 STRING:A0AV96
            PhosphoSite:A0AV96 PaxDb:A0AV96 PRIDE:A0AV96 DNASU:54502
            Ensembl:ENST00000295971 Ensembl:ENST00000319592
            Ensembl:ENST00000381793 Ensembl:ENST00000381795 GeneID:54502
            KEGG:hsa:54502 UCSC:uc003gvc.2 UCSC:uc003gvd.2
            GeneCards:GC04M040425 HGNC:HGNC:30358 HPA:HPA006347
            neXtProt:NX_A0AV96 PharmGKB:PA162400825 InParanoid:A0AV96
            OMA:IGPNREY ChiTaRS:RBM47 EvolutionaryTrace:A0AV96 GenomeRNAi:54502
            NextBio:56852 ArrayExpress:A0AV96 Bgee:A0AV96 CleanEx:HS_RBM47
            Genevestigator:A0AV96 Uniprot:A0AV96
        Length = 593

 Score = 387 (141.3 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 89/263 (33%), Positives = 149/263 (56%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G EVF+G +P+D  E++L  + E +G ++E+RLM D + G+++G+AFV +  K  AK
Sbjct:    67 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 125

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             +A+ EL++ E++ G+ +    S    RLFIG +PK    +E  + I  V  GV  + +  
Sbjct:   126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
                +  +NRGF+FV Y ++  A  +R+K++    +L G+   + WA+P+   D     + 
Sbjct:   186 SAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET- 244

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
             VK LYV+N+   T+ + IK+ F   G+     +   K   RD+ F+H+  R  A+ A+ +
Sbjct:   245 VKILYVRNLMIETTEDTIKKSF---GQFNPGCVERVKK-IRDYAFVHFTSREDAVHAMNN 300

Query:   342 TEKYEIDGQVLEVVLAKPQTDKK 364
                 E++G  LEV LAKP  DK+
Sbjct:   301 LNGTELEGSCLEVTLAKP-VDKE 322


>TAIR|locus:2042366 [details] [associations]
            symbol:AT2G44710 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 HSSP:P09651 EMBL:AY091781 EMBL:BT000637
            IPI:IPI00540100 RefSeq:NP_850422.1 UniGene:At.27807
            ProteinModelPortal:Q8RWQ1 SMR:Q8RWQ1 IntAct:Q8RWQ1 STRING:Q8RWQ1
            PRIDE:Q8RWQ1 EnsemblPlants:AT2G44710.1 GeneID:819079
            KEGG:ath:AT2G44710 TAIR:At2g44710 InParanoid:Q8RWQ1 OMA:EGEGYEN
            PhylomeDB:Q8RWQ1 ProtClustDB:CLSN2722610 Genevestigator:Q8RWQ1
            Uniprot:Q8RWQ1
        Length = 809

 Score = 358 (131.1 bits), Expect = 2.2e-33, Sum P(2) = 2.2e-33
 Identities = 85/294 (28%), Positives = 161/294 (54%)

Query:    63 DQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGS-EVFIGGLPKDASEE 121
             D + + +  DDD  H  EE K   +V  +E++ H  L         E+F+G L K ASEE
Sbjct:   169 DGAEDLDSEDDDDDHAIEEVKHGETVDVEEEEHHDVLHERRKRKEFEIFVGSLDKGASEE 228

Query:   122 DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181
             DL+ +   +G+V EVR++K+ ++ +SKG AF+ F + E AK+A+ EL S  + GK    +
Sbjct:   229 DLKKVFGHVGEVTEVRILKNPQTKKSKGSAFLRFATVEQAKRAVKELKSPMINGKKCGVT 288

Query:   182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNPSRNRGFSFVLYYNN 240
              S+  + LF+GN+ K WT +  R+ ++  G   ++ I L++D  N + NRG++F+ + + 
Sbjct:   289 ASQDNDTLFVGNICKIWTPEALREKLKHYGVENMDDITLVEDSNNVNMNRGYAFLEFSSR 348

Query:   241 ACADYSRQKMLNANFKLDGNTPT-ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKI 299
             + A  + ++++  +       P  +S+ D     +    A QVK +++  +  + + E++
Sbjct:   349 SDAMDAHKRLVKKDVMFGVEKPAKVSFTDSFLDLEDEIMA-QVKTIFIDGLLPSWNEERV 407

Query:   300 KELFQRHGEVTKVVMPPGK-SGKR-DFGFIHYAERSSALKAVKDTEKYEI-DGQ 350
             ++L + +G++ KV +     S +R DFGF+ +    +A+   K     E+ +G+
Sbjct:   408 RDLLKPYGKLEKVELARNMPSARRKDFGFVTFDTHEAAVSCAKFINNSELGEGE 461

 Score = 40 (19.1 bits), Expect = 2.2e-33, Sum P(2) = 2.2e-33
 Identities = 8/35 (22%), Positives = 15/35 (42%)

Query:    56 KAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGE 90
             + GA+ +      +      PHVE     + ++GE
Sbjct:     8 RGGAARRGGRLTRSALKAQNPHVESSHDESVNIGE 42


>UNIPROTKB|F1NJQ8 [details] [associations]
            symbol:RBM46 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0003676
            EMBL:AADN02016545 IPI:IPI00822755 ProteinModelPortal:F1NJQ8
            Ensembl:ENSGALT00000038887 Uniprot:F1NJQ8
        Length = 414

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 85/247 (34%), Positives = 140/247 (56%)

Query:   120 EEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTI 178
             E++L  L E  G ++E+RLM +  SGE++GFAFV + +KE A+ AI  L++ E++ G+ I
Sbjct:     3 EDELVPLFERAGKIYELRLMMEF-SGENRGFAFVMYTTKEDAQLAIKILNNYEIRPGRFI 61

Query:   179 RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYY 238
                +S    RLFIG +P+   ++E  K ++ +  GV  + +  D  + ++NRGF+FV Y 
Sbjct:    62 GVCISLDNCRLFIGAIPREKKKEEILKEMKRITEGVVDVIVCPDATDRTKNRGFAFVEYE 121

Query:   239 NNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEK 298
             ++  A  +R+++L   F+L G    + WA P+   D +    +VK LYV+N+  +T+ + 
Sbjct:   122 SHRAAAMARRRLLPGTFQLWGRAVQVDWACPEKEVD-AETMRRVKVLYVRNLMISTTEDT 180

Query:   299 IKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358
             IK  F +     +VV    K   RD+ F+H+  R  A+ A+       IDG  +EV LAK
Sbjct:   181 IKAEFNKFKP--RVVERVKKL--RDYAFVHFYNREDAVAAMSIMNGKCIDGASIEVTLAK 236

Query:   359 PQTDKKT 365
             P   + T
Sbjct:   237 PVNKEST 243


>UNIPROTKB|F1LM17 [details] [associations]
            symbol:F1LM17 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GO:GO:0003676 IPI:IPI00564342 PRIDE:F1LM17
            Ensembl:ENSRNOT00000040711 Uniprot:F1LM17
        Length = 440

 Score = 303 (111.7 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
 Identities = 80/252 (31%), Positives = 134/252 (53%)

Query:   116 KDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK- 174
             +D  E++L  L E  G V+ +RLM D   G+++G+AF++F  KE A+  +    S E++ 
Sbjct:     3 RDLYEDELVPLFEKAGPVWSLRLMMDP-LGQNRGYAFITFCGKEAAQGLVKPCDSCEIRP 61

Query:   175 GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
             GK +    S   N  F+G  PKN T++ F +    V  G+  I L   P +  +N GF F
Sbjct:    62 GKVLGVCFS-VANNTFVGFTPKNKTKENFEE-FSKVTEGLVGIILDHQPDDKKKNWGFCF 119

Query:   235 VLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNT 294
             + Y ++  A  +R  +++    + GN  T+  ADP   PD    A +VK L+V+N+    
Sbjct:   120 LEYEDHKSAAQARLWLMSGKV-VWGNVVTVERADPVEEPDPEGMA-KVKVLFVRNLATTV 177

Query:   295 STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354
             + E +++ F + GE+ +V          D+ F+H+ +R  A+KAV +    EI+G+ +E+
Sbjct:   178 TEEILEKSFSQFGELERV------KKLTDYAFVHFEDRE-AVKAVDEMNGKEIEGEEIEI 230

Query:   355 VLAKPQTDKKTE 366
             VLA     K+ E
Sbjct:   231 VLAMLPDRKRKE 242

 Score = 37 (18.1 bits), Expect = 2.9e-29, Sum P(2) = 2.9e-29
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query:   381 PHAGY-GGFAGTPYGSVGTG 399
             P+  + GG+AG   G  G G
Sbjct:   311 PYCSFDGGYAGRGRGGGGRG 330


>UNIPROTKB|E7ETM7 [details] [associations]
            symbol:HNRNPR "Heterogeneous nuclear ribonucleoprotein R"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GO:GO:0003676 EMBL:AL109936 HGNC:HGNC:5047
            ChiTaRS:HNRNPR IPI:IPI00910614 ProteinModelPortal:E7ETM7 SMR:E7ETM7
            Ensembl:ENST00000426846 UCSC:uc010odx.2 ArrayExpress:E7ETM7
            Bgee:E7ETM7 Uniprot:E7ETM7
        Length = 473

 Score = 317 (116.6 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 67/201 (33%), Positives = 116/201 (57%)

Query:   167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
             E  S E++ GK +   +S   NRLF+G++PKN T++   +    V  G+  + L   P +
Sbjct:    65 ECDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYHQPDD 124

Query:   226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
               +NRGF F+ Y ++  A  +R+++++   K+ GN  T+ WADP   PD    A +VK L
Sbjct:   125 KKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-KVKVL 183

Query:   286 YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY 345
             +V+N+    + E +++ F   G++ +V     K  K D+ F+H+ +R +A+KA+ +    
Sbjct:   184 FVRNLATTVTEEILEKSFSEFGKLERV-----KKLK-DYAFVHFEDRGAAVKAMDEMNGK 237

Query:   346 EIDGQVLEVVLAKPQTDKKTE 366
             EI+G+ +E+VLAKP   K+ E
Sbjct:   238 EIEGEEIEIVLAKPPDKKRKE 258


>UNIPROTKB|Q5T0W7 [details] [associations]
            symbol:A1CF "APOBEC1 complementation factor" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0000166 EMBL:AL512366 EMBL:AL589794
            IPI:IPI00657770 UniGene:Hs.282795 HGNC:HGNC:24086 GO:GO:0005720
            GO:GO:0004131 GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 OrthoDB:EOG4SXNCC
            HOVERGEN:HBG051370 SMR:Q5T0W7 Ensembl:ENST00000414883
            Uniprot:Q5T0W7
        Length = 201

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 58/153 (37%), Positives = 95/153 (62%)

Query:   101 ALPPN-GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159
             A PP  G E+FIG LP+D  E++L  LCE IG ++E+R+M D  +G ++G+AFV+F +K 
Sbjct:    49 AAPPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKV 107

Query:   160 FAKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
              AK AI +L++ E++ G+ +    S    RLF+G +PK    +E    ++ V  GV  + 
Sbjct:   108 EAKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVI 167

Query:   219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKML 251
             +     + ++NRGF+FV Y ++  A  +R+K+L
Sbjct:   168 VYPSAADKTKNRGFAFVEYESHRAAAMARRKLL 200


>UNIPROTKB|D6RBS9 [details] [associations]
            symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 HOGENOM:HOG000186083 GO:GO:0003676 EMBL:AC098869
            EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965845
            ProteinModelPortal:D6RBS9 SMR:D6RBS9 Ensembl:ENST00000515053
            ArrayExpress:D6RBS9 Bgee:D6RBS9 Uniprot:D6RBS9
        Length = 217

 Score = 247 (92.0 bits), Expect = 8.9e-21, P = 8.9e-21
 Identities = 53/150 (35%), Positives = 91/150 (60%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G EVF+G +P+D  E++L  + E +G ++E+RLM D + G+++G+AFV +  K  AK
Sbjct:    67 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 125

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             +A+ EL++ E++ G+ +    S    RLFIG +PK    +E  + I  V  GV  + +  
Sbjct:   126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYA 185

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKML 251
                +  +NRGF+FV Y ++  A  +R+K++
Sbjct:   186 SAADKMKNRGFAFVEYESHRAAAMARRKLM 215


>DICTYBASE|DDB_G0291486 [details] [associations]
            symbol:DDB_G0291486 "putative splicing regulator"
            species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
            "biological_process" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
            RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
            EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
            InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
        Length = 489

 Score = 212 (79.7 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
 Identities = 57/187 (30%), Positives = 108/187 (57%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             +++F+G +PK  +EE++++L   I ++  V L+K+K + E +G AFVS  S+E A +AI+
Sbjct:     3 TKLFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIE 62

Query:   167 ELH-SKELKGKT----IRCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
             +LH SK+ +G      ++ + SE +   ++LF+G +P+++ E++ R++ E  G  VE I 
Sbjct:    63 QLHNSKKFQGVLNNLQVKYADSEQEKLASKLFVGMLPRSYEEEQIRELFEPHGV-VEDIC 121

Query:   219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG--NTPTISWADPKSTPDHS 276
             +++ P + S+  GF   + ++N  +  S    LN   KLDG  N   + +AD +      
Sbjct:   122 ILRGPNSESKGCGF---IKFDNRESALSAIATLNG-MKLDGSPNPLVVKFADTEKDKKKK 177

Query:   277 AAASQVK 283
                 Q++
Sbjct:   178 QKQQQIQ 184

 Score = 180 (68.4 bits), Expect = 6.9e-11, P = 6.9e-11
 Identities = 53/182 (29%), Positives = 95/182 (52%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
             +LF+G +PK++ E+E + +  ++   +E++ LIK+ +  +  +G +FV   +   AD + 
Sbjct:     4 KLFVGQIPKSFNEEEIKNLFTNIA-NIESVSLIKN-KTTNEPQGCAFVSVPSREEADRAI 61

Query:   248 QKMLNANFKLDG--NTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
             +++ N+  K  G  N   + +AD     +    AS+   L+V  +P +   E+I+ELF+ 
Sbjct:    62 EQLHNSK-KFQGVLNNLQVKYADS----EQEKLASK---LFVGMLPRSYEEEQIRELFEP 113

Query:   306 HGEVTKVVMPPG-KSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQV--LEVVLAKPQTD 362
             HG V  + +  G  S  +  GFI +  R SAL A+      ++DG    L V  A  + D
Sbjct:   114 HGVVEDICILRGPNSESKGCGFIKFDNRESALSAIATLNGMKLDGSPNPLVVKFADTEKD 173

Query:   363 KK 364
             KK
Sbjct:   174 KK 175

 Score = 149 (57.5 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 31/85 (36%), Positives = 47/85 (55%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P GS +F+  +P   S+ DL  L +  G V   ++  DK +G SKGF FVS+ +   A  
Sbjct:   400 PQGSNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGFVSYDNPASANL 459

Query:   164 AIDELHSKELKGKTIRCSLSETKNR 188
             AI  LH + + GK ++ SL +T  +
Sbjct:   460 AISNLHGQMMAGKKLKVSLKQTSGQ 484

 Score = 95 (38.5 bits), Expect = 2.8e-20, Sum P(2) = 2.8e-20
 Identities = 31/105 (29%), Positives = 49/105 (46%)

Query:   269 PKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGF 326
             P     + +   Q   L+V NIP+  S   +  LFQ++G V   KV +       + FGF
Sbjct:   389 PMGNKKNQSVGPQGSNLFVYNIPNYFSDNDLLGLFQQYGIVVSAKVYVDKNTGVSKGFGF 448

Query:   327 IHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
             + Y   +SA  A+ +     + G+ L+V L   QT    +G+ PY
Sbjct:   449 VSYDNPASANLAISNLHGQMMAGKKLKVSLK--QTSG--QGSQPY 489


>CGD|CAL0001392 [details] [associations]
            symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
            "cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
            "cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
            evidence=IEA] [GO:0006446 "regulation of translational initiation"
            evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
            poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
            GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
            GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
            RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
            SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
            KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
        Length = 629

 Score = 263 (97.6 bits), Expect = 3.1e-20, P = 3.1e-20
 Identities = 84/319 (26%), Positives = 153/319 (47%)

Query:    59 ASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEK-DKHAQLLALPPNGSEVFIGGLPKD 117
             A+E +Q  E+    +     EE+    A+   D+  ++  +   +  N + +++G L   
Sbjct:     3 AAETNQLQESMEKLNIGSTTEEQSAAAATTTADQSAEEQGESSGVAENSASLYVGELNPS 62

Query:   118 ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177
              +E  L ++  PIG V  +R+ +D  S +S G+A+V++   E  +KAI+EL+   ++G+ 
Sbjct:    63 VNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEELNYNPIEGRP 122

Query:   178 IRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKDPQNP-SRNRGF 232
              R   S+   +  R   GN+  KN       K + D       I   K   +   +++ F
Sbjct:   123 CRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCF 182

Query:   233 SFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA----LYVK 288
              FV Y     A+ + +   N N  L  N   +      S  D  +   ++KA    +YVK
Sbjct:   183 GFVHYETAEAAEAAIE---NVNGMLL-NDREVFVGKHISKKDRESKFEEMKANFTNIYVK 238

Query:   289 NIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEI 347
             NI  N S E  ++LF   G++T + +   + GK + FGF+++ +  SA+KAV++    EI
Sbjct:   239 NIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEI 298

Query:   348 DGQVLEVVLAKPQTDKKTE 366
             +GQ + V  A+ + ++  E
Sbjct:   299 NGQKIYVGRAQKKRERLEE 317

 Score = 150 (57.9 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 76/291 (26%), Positives = 124/291 (42%)

Query:   171 KELKGKTIRCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS 227
             K +  K       E K     +++ N+  N++E+ F K+    G  + +I L KD    S
Sbjct:   214 KHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGK-ITSIYLEKDQDGKS 272

Query:   228 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST------PDHSAAASQ 281
             +  GF FV + ++  A  + ++ LN   +++G    +  A  K          + A   +
Sbjct:   273 K--GFGFVNFEDHESAVKAVEE-LNDK-EINGQKIYVGRAQKKRERLEELKKQYEAVRLE 328

Query:   282 VKA------LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
               A      L+VKN+ D   +EK++E F+  G +T   +   ++GK + FGF+ +     
Sbjct:   329 KLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEE 388

Query:   335 ALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGT--- 391
             A KA+ +     I+G+ L V LA+ + D +               + +A  GG  G    
Sbjct:   389 ATKAITEMNTRMINGKPLYVALAQ-RKDVRRSQLEQQIQARNQMRMQNAAAGGLPGQFIP 447

Query:   392 P--YGSVG----TGFGVAA--GFQ-QPMIYGRG-PMPSGMHMVPMVLPDGQ 432
             P  YG  G     G G A   G   Q M+ GRG P P      P   P+GQ
Sbjct:   448 PMFYGQQGFFPPNGRGNAPYPGPNPQMMMRGRGQPFPEQW---PRPGPNGQ 495

 Score = 132 (51.5 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 28/82 (34%), Positives = 48/82 (58%)

Query:   106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
             G  +F+  L      E L +  +P G +   ++M D E+G+SKGF FV F + E A KAI
Sbjct:   335 GVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVD-EAGKSKGFGFVCFTTPEEATKAI 393

Query:   166 DELHSKELKGKTIRCSLSETKN 187
              E++++ + GK +  +L++ K+
Sbjct:   394 TEMNTRMINGKPLYVALAQRKD 415


>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
            symbol:pabpc4 "poly(A) binding protein,
            cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
            EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
            ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
            GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
            NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
        Length = 637

 Score = 258 (95.9 bits), Expect = 5.6e-20, Sum P(2) = 5.6e-20
 Identities = 76/268 (28%), Positives = 134/268 (50%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  D +E  L +   P G V  +R+ +D  +  S G+A+V+F+    A++A+D
Sbjct:    12 ASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 71

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++   +KGK IR   S+    L    +GNV  KN  +    K + D       I   K 
Sbjct:    72 TMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 131

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               + + ++G++FV +     AD + +KM N     D       +   K    +  A A +
Sbjct:   132 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKSRKEREAEMGAKAKE 190

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
                +Y+KN  D+   +++KELF ++G+   V VM  P GKS  R FGF+ Y +   A KA
Sbjct:   191 FTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKS--RGFGFVSYEKHEDANKA 248

Query:   339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
             V++    E++G+ + V  A+ + +++ E
Sbjct:   249 VEEMNGTELNGKTVFVGRAQKKMERQAE 276

 Score = 145 (56.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
 Identities = 30/97 (30%), Positives = 55/97 (56%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  K++ A++ A     + V+I     D  ++ L++L +  G    V++M D  +G+S+G
Sbjct:   175 KSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP-TGKSRG 233

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
             F FVS+   E A KA++E++  EL GKT+    ++ K
Sbjct:   234 FGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKK 270

 Score = 144 (55.7 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
 Identities = 54/224 (24%), Positives = 103/224 (45%)

Query:   162 KKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             K  +    S++ +   +     E  N ++I N   +  +   +++ +  G  + +++++ 
Sbjct:   168 KVFVGRFKSRKEREAEMGAKAKEFTN-VYIKNFGDDMDDQRLKELFDKYGKTL-SVKVMT 225

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST--PDHSAAA 279
             DP   SR  GF FV Y  +  A+ + ++M N   +L+G T  +  A  K     +     
Sbjct:   226 DPTGKSR--GFGFVSYEKHEDANKAVEEM-NGT-ELNGKTVFVGRAQKKMERQAELKRKF 281

Query:   280 SQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFI 327
              Q+K           LY+KN+ D    EK+++ F   G +T  KV++  G+S  + FGF+
Sbjct:   282 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRS--KGFGFV 339

Query:   328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
              ++    A KAV +     +  + L V LA+ + ++K   T  Y
Sbjct:   340 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 383

 Score = 42 (19.8 bits), Expect = 5.6e-20, Sum P(2) = 5.6e-20
 Identities = 22/78 (28%), Positives = 29/78 (37%)

Query:   357 AKPQTDKKTEGTFPYSPGLVPTHLPHA--------GYGGFAGTPYGSVGTGFGVAAGFQQ 408
             A PQ   +T  T+ Y+P  +    P+         G GGF G P      G         
Sbjct:   412 AVPQAQNRT--TY-YAPNQLTQMRPNPRWQQQGGRGQGGFQGMPSSLRQPGPRANIRHLA 468

Query:   409 PMIYGRGP--MPSGMHMV 424
             P    +GP  MP+G   V
Sbjct:   469 PNASNQGPRGMPTGAQRV 486


>UNIPROTKB|B1ANR0 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
            EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
            HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
            UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
            SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
        Length = 615

 Score = 256 (95.2 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
 Identities = 76/268 (28%), Positives = 131/268 (48%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  D +E  L +   P G V  +R+ +D  +  S G+A+V+F+    A++A+D
Sbjct:    11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++   +KGK IR   S+    L    +GNV  KN  +    K + D       I   K 
Sbjct:    71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               + + ++G++FV +     AD + +KM N     D       +   K    +  A A +
Sbjct:   131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
                +Y+KN  +    E +KELF + G+   V VM  P GKS  + FGF+ Y +   A KA
Sbjct:   190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247

Query:   339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
             V++    EI G+++ V  A+ + +++ E
Sbjct:   248 VEEMNGKEISGKIIFVGRAQKKVERQAE 275

 Score = 155 (59.6 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
 Identities = 32/97 (32%), Positives = 56/97 (57%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  K++ A+L A     + V+I    ++  +E L++L    G    V++M+D  +G+SKG
Sbjct:   174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKG 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
             F FVS+   E A KA++E++ KE+ GK I    ++ K
Sbjct:   233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269

 Score = 136 (52.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
 Identities = 51/224 (22%), Positives = 102/224 (45%)

Query:   162 KKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             K  +    S++ +   +     E  N ++I N  +   ++  +++    G  + ++++++
Sbjct:   167 KVFVGRFKSRKEREAELGAKAKEFTN-VYIKNFGEEVDDESLKELFSQFGKTL-SVKVMR 224

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--STPDHSAAA 279
             DP   S+  GF FV Y  +  A+ + ++M N   ++ G    +  A  K     +     
Sbjct:   225 DPNGKSK--GFGFVSYEKHEDANKAVEEM-NGK-EISGKIIFVGRAQKKVERQAELKRKF 280

Query:   280 SQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFI 327
              Q+K           LY+KN+ D    EK+++ F   G +T  KV++  G+S  + FGF+
Sbjct:   281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS--KGFGFV 338

Query:   328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
              ++    A KAV +     +  + L V LA+ + ++K   T  Y
Sbjct:   339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382

 Score = 41 (19.5 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query:   401 GVAAGFQ-QPM-IYGRGPMPSGMHMVPMVLP 429
             G   GFQ  P  I   GP P+  H+ P  +P
Sbjct:   441 GRPQGFQGMPSAIRQSGPRPTLRHLAPTGVP 471


>UNIPROTKB|J3KTH5 [details] [associations]
            symbol:PABPC4L "Polyadenylate-binding protein 4-like"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
            EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
            RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
            Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
            Uniprot:J3KTH5
        Length = 428

 Score = 254 (94.5 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 81/301 (26%), Positives = 148/301 (49%)

Query:    75 TPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVF 134
             +PH  +  K +       KDK   + A     S +++G L  D +E+ L      +G V 
Sbjct:    38 SPH-RDCSKNSRGQTHSGKDKEMNVAAKYRMAS-LYVGDLHADVTEDLLFRKFSTVGPVL 95

Query:   135 EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK---NRLFI 191
              +R+ +D+ +  S G+A+V+F     A+KA+D ++   +KGK+IR   S+      R  I
Sbjct:    96 SIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGI 155

Query:   192 GNV-PKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKM 250
             GNV  KN  +    K + +       I   K   +   ++G++FV + N + AD + ++M
Sbjct:   156 GNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEM 215

Query:   251 LNANFKLDGNTPTISWADPKSTPDHSAA----ASQVKALYVKNIPDNTSTEKIKELFQRH 306
              N    L G    +     K+  D  A     AS+   +Y+KN   +   E++K++F ++
Sbjct:   216 -NGKL-LKGCKVFVGRF--KNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKY 271

Query:   307 GEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKT 365
             G+   V +    SGK + FGF+ +    +A KAV++    +I+GQ++ V  A+ + +++ 
Sbjct:   272 GKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQA 331

Query:   366 E 366
             E
Sbjct:   332 E 332


>UNIPROTKB|F1SV06 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
            [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
            "poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
            GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
            GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
            EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
        Length = 631

 Score = 258 (95.9 bits), Expect = 1.3e-19, P = 1.3e-19
 Identities = 74/266 (27%), Positives = 129/266 (48%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  D +E  L +   P G V  +R+ +D  +  S G+A+V+F+    A++A+D
Sbjct:    11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++   +KGK IR   S+    L    +GNV  KN  +    K + D       I   K 
Sbjct:    71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               + + ++G++FV +     AD + +KM N     D       +   K    +  A A +
Sbjct:   131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
                +Y+KN  +    E +KELF + G+   V +    SGK + FGF+ Y +   A KAV+
Sbjct:   190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
             +    EI G+V+ V  A+ + +++ E
Sbjct:   250 EMNGKEISGKVIFVGRAQKKVERQAE 275

 Score = 160 (61.4 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 33/97 (34%), Positives = 57/97 (58%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  K++ A+L A     + V+I    ++  +E+L++L    G    V++M+D  SG+SKG
Sbjct:   174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKG 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
             F FVS+   E A KA++E++ KE+ GK I    ++ K
Sbjct:   233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKK 269

 Score = 137 (53.3 bits), Expect = 6.2e-06, P = 6.2e-06
 Identities = 51/224 (22%), Positives = 102/224 (45%)

Query:   162 KKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             K  +    S++ +   +     E  N ++I N  +   ++  +++    G  + ++++++
Sbjct:   167 KVFVGRFKSRKEREAELGAKAKEFTN-VYIKNFGEEVDDENLKELFSQFGKTL-SVKVMR 224

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--STPDHSAAA 279
             DP   S+  GF FV Y  +  A+ + ++M N   ++ G    +  A  K     +     
Sbjct:   225 DPSGKSK--GFGFVSYEKHEDANKAVEEM-NGK-EISGKVIFVGRAQKKVERQAELKRKF 280

Query:   280 SQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFI 327
              Q+K           LY+KN+ D    EK+++ F   G +T  KV++  G+S  + FGF+
Sbjct:   281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS--KGFGFV 338

Query:   328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
              ++    A KAV +     +  + L V LA+ + ++K   T  Y
Sbjct:   339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382


>UNIPROTKB|E2R9I0 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
            [GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
            EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
            Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
        Length = 631

 Score = 258 (95.9 bits), Expect = 1.3e-19, P = 1.3e-19
 Identities = 74/266 (27%), Positives = 129/266 (48%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  D +E  L +   P G V  +R+ +D  +  S G+A+V+F+    A++A+D
Sbjct:    11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++   +KGK IR   S+    L    +GNV  KN  +    K + D       I   K 
Sbjct:    71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               + + ++G++FV +     AD + +KM N     D       +   K    +  A A +
Sbjct:   131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
                +Y+KN  +    E +KELF + G+   V +    SGK + FGF+ Y +   A KAV+
Sbjct:   190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
             +    EI G+V+ V  A+ + +++ E
Sbjct:   250 EMNGKEISGKVIFVGRAQKKVERQAE 275

 Score = 159 (61.0 bits), Expect = 2.3e-08, P = 2.3e-08
 Identities = 33/97 (34%), Positives = 56/97 (57%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  K++ A+L A     + V+I    ++  +E L++L    G    V++M+D  SG+SKG
Sbjct:   174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-SGKSKG 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
             F FVS+   E A KA++E++ KE+ GK I    ++ K
Sbjct:   233 FGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKK 269

 Score = 137 (53.3 bits), Expect = 6.2e-06, P = 6.2e-06
 Identities = 51/224 (22%), Positives = 102/224 (45%)

Query:   162 KKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             K  +    S++ +   +     E  N ++I N  +   ++  +++    G  + ++++++
Sbjct:   167 KVFVGRFKSRKEREAELGAKAKEFTN-VYIKNFGEEVDDESLKELFSQFGKTL-SVKVMR 224

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--STPDHSAAA 279
             DP   S+  GF FV Y  +  A+ + ++M N   ++ G    +  A  K     +     
Sbjct:   225 DPSGKSK--GFGFVSYEKHEDANKAVEEM-NGK-EISGKVIFVGRAQKKVERQAELKRKF 280

Query:   280 SQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFI 327
              Q+K           LY+KN+ D    EK+++ F   G +T  KV++  G+S  + FGF+
Sbjct:   281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS--KGFGFV 338

Query:   328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
              ++    A KAV +     +  + L V LA+ + ++K   T  Y
Sbjct:   339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382


>UNIPROTKB|A4IFC3 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
            [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
            "poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
            GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
            eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
            OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
            IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
            Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
            InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
        Length = 645

 Score = 257 (95.5 bits), Expect = 1.8e-19, P = 1.8e-19
 Identities = 74/266 (27%), Positives = 129/266 (48%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  D +E  L +   P G V  +R+ +D  +  S G+A+V+F+    A++A+D
Sbjct:    11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++   +KGK IR   S+    L    +GNV  KN  +    K + D       I   K 
Sbjct:    71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               + + ++G++FV +     AD + +KM N     D       +   K    +  A A +
Sbjct:   131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
                +Y+KN  +    E +KELF + G+   V +    SGK + FGF+ Y +   A KAV+
Sbjct:   190 FTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVE 249

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
             +    EI G+V+ V  A+ + +++ E
Sbjct:   250 EMNGKEITGKVIFVGRAQKKVERQAE 275

 Score = 159 (61.0 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 33/97 (34%), Positives = 57/97 (58%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  K++ A+L A     + V+I    ++  +E+L++L    G    V++M+D  SG+SKG
Sbjct:   174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDP-SGKSKG 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
             F FVS+   E A KA++E++ KE+ GK I    ++ K
Sbjct:   233 FGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKK 269

 Score = 136 (52.9 bits), Expect = 8.3e-06, P = 8.3e-06
 Identities = 51/224 (22%), Positives = 102/224 (45%)

Query:   162 KKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             K  +    S++ +   +     E  N ++I N  +   ++  +++    G  + ++++++
Sbjct:   167 KVFVGRFKSRKEREAELGAKAKEFTN-VYIKNFGEEVDDENLKELFSQFGKTL-SVKVMR 224

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--STPDHSAAA 279
             DP   S+  GF FV Y  +  A+ + ++M N   ++ G    +  A  K     +     
Sbjct:   225 DPSGKSK--GFGFVSYEKHEDANKAVEEM-NGK-EITGKVIFVGRAQKKVERQAELKRKF 280

Query:   280 SQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFI 327
              Q+K           LY+KN+ D    EK+++ F   G +T  KV++  G+S  + FGF+
Sbjct:   281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS--KGFGFV 338

Query:   328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
              ++    A KAV +     +  + L V LA+ + ++K   T  Y
Sbjct:   339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382


>UNIPROTKB|E1C903 [details] [associations]
            symbol:PABPC4 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
            binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
            evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
            EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
            UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
            Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
            NextBio:20822696 Uniprot:E1C903
        Length = 630

 Score = 256 (95.2 bits), Expect = 2.2e-19, P = 2.2e-19
 Identities = 75/268 (27%), Positives = 135/268 (50%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  D +E  L +   P G V  +R+ +D  +  S G+A+V+F+    A++A+D
Sbjct:    11 ASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++   +KGK IR   S+    L    +GNV  KN  +    K + D       I   K 
Sbjct:    71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               + + ++G++FV +     AD + +KM N     D       +   K    +  A A +
Sbjct:   131 VCDENGSKGYAFVHFETQDAADRAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
                +Y+KN  D+   E++KELF ++G+   V VM  P GKS  + FGF+ + +   A KA
Sbjct:   190 FTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKS--KGFGFVSFEKHEDANKA 247

Query:   339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
             V++    +I+G+++ V  A+ + +++ E
Sbjct:   248 VEEMNGKDINGKMVFVGRAQKKVERQAE 275

 Score = 149 (57.5 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 32/97 (32%), Positives = 54/97 (55%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  K++ A+L A     + V+I     D  +E L++L    G    V++M D  +G+SKG
Sbjct:   174 KSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDP-TGKSKG 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
             F FVSF   E A KA++E++ K++ GK +    ++ K
Sbjct:   233 FGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKK 269

 Score = 128 (50.1 bits), Expect = 6.1e-05, P = 6.1e-05
 Identities = 50/224 (22%), Positives = 101/224 (45%)

Query:   162 KKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             K  +    S++ +   +     E  N ++I N   +  ++  +++    G  + +++++ 
Sbjct:   167 KVFVGRFKSRKEREAELGAKAKEFTN-VYIKNFGDDMDDERLKELFSKYGKTL-SVKVMT 224

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--STPDHSAAA 279
             DP   S+  GF FV +  +  A+ + ++M N    ++G    +  A  K     +     
Sbjct:   225 DPTGKSK--GFGFVSFEKHEDANKAVEEM-NGK-DINGKMVFVGRAQKKVERQAELKRRF 280

Query:   280 SQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFI 327
              Q+K           LY+KN+ D    EK+++ F   G +T  KV++  G+S  + FGF+
Sbjct:   281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS--KGFGFV 338

Query:   328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
              ++    A KAV +     +  + L V LA+ + ++K   T  Y
Sbjct:   339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382


>UNIPROTKB|P0CB38 [details] [associations]
            symbol:PABPC4L "Polyadenylate-binding protein 4-like"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
            EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
            ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
            DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
            UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
            neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
            Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
        Length = 370

 Score = 248 (92.4 bits), Expect = 2.2e-19, P = 2.2e-19
 Identities = 73/269 (27%), Positives = 137/269 (50%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  D +E+ L      +G V  +R+ +D+ +  S G+A+V+F     A+KA+D
Sbjct:    10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69

Query:   167 ELHSKELKGKTIRCSLSETK---NRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++   +KGK+IR   S+      R  IGNV  KN  +    K + +       I   K 
Sbjct:    70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKV 129

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA---- 278
               +   ++G++FV + N + AD + ++M N    L G    +     K+  D  A     
Sbjct:   130 MSDDQGSKGYAFVHFQNQSAADRAIEEM-NGKL-LKGCKVFVGRF--KNRKDREAELRSK 185

Query:   279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALK 337
             AS+   +Y+KN   +   E++K++F ++G+   V +    SGK + FGF+ +    +A K
Sbjct:   186 ASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKK 245

Query:   338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
             AV++    +I+GQ++ V  A+ + +++ E
Sbjct:   246 AVEEMNGRDINGQLIFVGRAQKKVERQAE 274

 Score = 159 (61.0 bits), Expect = 8.6e-09, P = 8.6e-09
 Identities = 34/97 (35%), Positives = 57/97 (58%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             ++ KD+ A+L +     + V+I     D  +E L+D+    G    V++M D  SG+SKG
Sbjct:   173 KNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDS-SGKSKG 231

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
             F FVSF S E AKKA++E++ +++ G+ I    ++ K
Sbjct:   232 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKK 268


>UNIPROTKB|Q13310 [details] [associations]
            symbol:PABPC4 "Polyadenylate-binding protein 4"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
            [GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
            "cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
            binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
            evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
            [GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
            coagulation" evidence=TAS] [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
            GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
            GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
            GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
            EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
            IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
            RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
            UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
            IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
            DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
            Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
            KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
            GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
            neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
            PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
            NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
            Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
        Length = 644

 Score = 256 (95.2 bits), Expect = 2.3e-19, P = 2.3e-19
 Identities = 76/268 (28%), Positives = 131/268 (48%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  D +E  L +   P G V  +R+ +D  +  S G+A+V+F+    A++A+D
Sbjct:    11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++   +KGK IR   S+    L    +GNV  KN  +    K + D       I   K 
Sbjct:    71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               + + ++G++FV +     AD + +KM N     D       +   K    +  A A +
Sbjct:   131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
                +Y+KN  +    E +KELF + G+   V VM  P GKS  + FGF+ Y +   A KA
Sbjct:   190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247

Query:   339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
             V++    EI G+++ V  A+ + +++ E
Sbjct:   248 VEEMNGKEISGKIIFVGRAQKKVERQAE 275

 Score = 155 (59.6 bits), Expect = 6.6e-08, P = 6.6e-08
 Identities = 32/97 (32%), Positives = 56/97 (57%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  K++ A+L A     + V+I    ++  +E L++L    G    V++M+D  +G+SKG
Sbjct:   174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP-NGKSKG 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
             F FVS+   E A KA++E++ KE+ GK I    ++ K
Sbjct:   233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269

 Score = 136 (52.9 bits), Expect = 8.3e-06, P = 8.3e-06
 Identities = 51/224 (22%), Positives = 102/224 (45%)

Query:   162 KKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             K  +    S++ +   +     E  N ++I N  +   ++  +++    G  + ++++++
Sbjct:   167 KVFVGRFKSRKEREAELGAKAKEFTN-VYIKNFGEEVDDESLKELFSQFGKTL-SVKVMR 224

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--STPDHSAAA 279
             DP   S+  GF FV Y  +  A+ + ++M N   ++ G    +  A  K     +     
Sbjct:   225 DPNGKSK--GFGFVSYEKHEDANKAVEEM-NGK-EISGKIIFVGRAQKKVERQAELKRKF 280

Query:   280 SQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFI 327
              Q+K           LY+KN+ D    EK+++ F   G +T  KV++  G+S  + FGF+
Sbjct:   281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS--KGFGFV 338

Query:   328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
              ++    A KAV +     +  + L V LA+ + ++K   T  Y
Sbjct:   339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382


>UNIPROTKB|F1SMV6 [details] [associations]
            symbol:LOC100737174 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00550000074656 EMBL:CU856676
            Ensembl:ENSSSCT00000017723 Uniprot:F1SMV6
        Length = 365

 Score = 247 (92.0 bits), Expect = 2.7e-19, P = 2.7e-19
 Identities = 89/341 (26%), Positives = 165/341 (48%)

Query:    82 EKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD 141
             EKP     + +KD+ A+ L L  N        LP   ++++L+++ E   D  E+RL+  
Sbjct:    33 EKPKGK--DSKKDRDARTL-LAKN--------LPYKVTQDELKEVFE---DAVEIRLVS- 77

Query:   142 KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK--NRLFIGNVPKNWT 199
              + G+SKG A++ F+++  A+K ++E    E+ G++I    +  K  N+ F G     W+
Sbjct:    78 -KDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWS 136

Query:   200 EDEFRKVIEDVGPGV--ETIE-------LIKDPQNPS-RNRGFSFVLYYNNACADYSRQK 249
              +    V+ ++      ET++        IK PQN + +++G++F+ +   A  + +++ 
Sbjct:   137 GESKTLVLSNLAYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEF---ASFEDAKEA 193

Query:   250 MLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308
             + + N + ++G    +    P+ +P+  A +   K L+VK + + T+ E +KE F   G 
Sbjct:   194 LNSCNKREIEGRAIRLELQGPRGSPN--ARSQPSKTLFVKGLSEETTEETLKESFD--GS 249

Query:   309 VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT-EKYEIDGQVLEVVLAKPQTDKKTE 366
             +   ++   ++G  + FGF+ +     A KA K+  E  EIDG  + +  AKP+ +    
Sbjct:   250 IRARIVTDRETGSSKGFGFVDFNSEEDA-KAAKEAMEDGEIDGNKVTLDWAKPKGEGGFG 308

Query:   367 GTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQ 407
             G      G         G GGF G   G    GFG   GF+
Sbjct:   309 GRGGGRGGFGGRGGGRGGRGGFGGRGRG----GFGGRGGFR 345

 Score = 153 (58.9 bits), Expect = 4.0e-08, P = 4.0e-08
 Identities = 56/227 (24%), Positives = 112/227 (49%)

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNR--------LFIGNVPKNWTED 201
             F +V F S E  +KA+ EL   ++ G  I+    + K+         L   N+P   T+D
Sbjct:     3 FGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQD 61

Query:   202 EFRKVIEDVGPGVETIELI-KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGN 260
             E ++V ED    VE I L+ KD     +++G +++ +   A A+ + ++      ++DG 
Sbjct:    62 ELKEVFEDA---VE-IRLVSKD----GKSKGIAYIEFKTEADAEKTLEEKQGT--EIDGR 111

Query:   261 TPTISWADPKS-TPD-----HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVM 314
             + ++ +   K    D     +S  + + K L + N+  + + E ++E+F++    T + +
Sbjct:   112 SISLYYTGEKGQNQDFRGGKNSTWSGESKTLVLSNLAYSATEETLQEVFEK---ATFIKV 168

Query:   315 PPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360
             P  ++GK + + FI +A    A +A+    K EI+G+ + + L  P+
Sbjct:   169 PQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 215


>SGD|S000000967 [details] [associations]
            symbol:PAB1 "Poly(A) binding protein" species:4932
            "Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
            evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
            [GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
            stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IEA;IDA] [GO:0006446 "regulation of translational
            initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
            "transport" evidence=IEA] [GO:0051028 "mRNA transport"
            evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
            poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
            GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
            GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
            GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
            EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
            PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
            DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
            PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
            KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
            NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
            Uniprot:P04147
        Length = 577

 Score = 254 (94.5 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 81/297 (27%), Positives = 145/297 (48%)

Query:    81 EEKPTASVGEDEKDKH--AQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRL 138
             E+    ++ +D+K     ++  ++  + + +++G L    SE  L D+  PIG V  +R+
Sbjct:    10 EQLENLNIQDDQKQAATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRV 69

Query:   139 MKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLF---IGNV- 194
              +D  +  S G+A+V+F   E  +KAI++L+   +KG+  R   S+    L     GN+ 
Sbjct:    70 CRDAITKTSLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIF 129

Query:   195 PKNWTEDEFRKVIED---VGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKML 251
              KN   D   K + D   V   + + ++  D +N  +++GF FV +     A  +    L
Sbjct:   130 IKNLHPDIDNKALYDTFSVFGDILSSKIATD-EN-GKSKGFGFVHFEEEGAAKEAIDA-L 186

Query:   252 NANFKLDGNTPTISWADPKSTPDHSAAASQVKA----LYVKNIPDNTSTEKIKELFQRHG 307
             N    L+G    I  A   S  +  +   + KA    LYVKNI   T+ E+ +ELF + G
Sbjct:   187 NGML-LNGQE--IYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFG 243

Query:   308 EVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363
              +    +     GK + FGF++Y +   A+KAV+     E++G+ L V  A+ + ++
Sbjct:   244 PIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNER 300

 Score = 152 (58.6 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 64/267 (23%), Positives = 116/267 (43%)

Query:   182 LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYY 238
             L ETK     L++ N+    T+++F+++    GP + +  L KD     + +GF FV Y 
Sbjct:   211 LEETKAHYTNLYVKNINSETTDEQFQELFAKFGP-IVSASLEKDADG--KLKGFGFVNYE 267

Query:   239 NNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH------------SAAASQVKALY 286
              +  A     + LN + +L+G    +  A  K+   H              A  Q   L+
Sbjct:   268 KHEDA-VKAVEALNDS-ELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLF 325

Query:   287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKY 345
             VKN+ D+   EK++E F  +G +T   +   ++GK + FGF+ ++    A KA+ +  + 
Sbjct:   326 VKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQ 385

Query:   346 EIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAG 405
              + G+ L V +A+ +  ++++         +   +       +      +     G+   
Sbjct:   386 IVAGKPLYVAIAQRKDVRRSQ---------LAQQIQARNQMRYQQATAAAAAAAAGMPGQ 436

Query:   406 FQQPMIYGRGPMPSGMHMVPMVLPDGQ 432
             F  PM YG  P P G   VP   P+ Q
Sbjct:   437 FMPPMFYGVMP-PRG---VPFNGPNPQ 459

 Score = 119 (46.9 bits), Expect = 0.00052, P = 0.00052
 Identities = 26/82 (31%), Positives = 46/82 (56%)

Query:   106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
             G  +F+  L     +E L +   P G +   ++M+  E+G+SKGF FV F + E A KAI
Sbjct:   321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAI 379

Query:   166 DELHSKELKGKTIRCSLSETKN 187
              E + + + GK +  ++++ K+
Sbjct:   380 TEKNQQIVAGKPLYVAIAQRKD 401


>UNIPROTKB|I3LRH2 [details] [associations]
            symbol:LOC100737210 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
            GeneTree:ENSGT00550000074656 OMA:RLEYSQS RefSeq:XP_003133770.2
            Ensembl:ENSSSCT00000032422 GeneID:100519984 KEGG:ssc:100519984
            Uniprot:I3LRH2
        Length = 724

 Score = 247 (92.0 bits), Expect = 3.7e-19, Sum P(2) = 3.7e-19
 Identities = 89/341 (26%), Positives = 165/341 (48%)

Query:    82 EKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD 141
             EKP     + +KD+ A+ L L  N        LP   ++++L+++ E   D  E+RL+  
Sbjct:   392 EKPKGK--DSKKDRDARTL-LAKN--------LPYKVTQDELKEVFE---DAVEIRLVS- 436

Query:   142 KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK--NRLFIGNVPKNWT 199
              + G+SKG A++ F+++  A+K ++E    E+ G++I    +  K  N+ F G     W+
Sbjct:   437 -KDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQNQDFRGGKNSTWS 495

Query:   200 EDEFRKVIEDVGPGV--ETIE-------LIKDPQNPS-RNRGFSFVLYYNNACADYSRQK 249
              +    V+ ++      ET++        IK PQN + +++G++F+ +   A  + +++ 
Sbjct:   496 GESKTLVLSNLAYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEF---ASFEDAKEA 552

Query:   250 MLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308
             + + N + ++G    +    P+ +P+  A +   K L+VK + + T+ E +KE F   G 
Sbjct:   553 LNSCNKREIEGRAIRLELQGPRGSPN--ARSQPSKTLFVKGLSEETTEETLKESFD--GS 608

Query:   309 VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT-EKYEIDGQVLEVVLAKPQTDKKTE 366
             +   ++   ++G  + FGF+ +     A KA K+  E  EIDG  + +  AKP+ +    
Sbjct:   609 IRARIVTDRETGSSKGFGFVDFNSEEDA-KAAKEAMEDGEIDGNKVTLDWAKPKGEGGFG 667

Query:   367 GTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQ 407
             G      G         G GGF G   G    GFG   GF+
Sbjct:   668 GRGGGRGGFGGRGGGRGGRGGFGGRGRG----GFGGRGGFR 704

 Score = 180 (68.4 bits), Expect = 1.4e-10, P = 1.4e-10
 Identities = 75/323 (23%), Positives = 149/323 (46%)

Query:    61 EKDQSAEANRNDDDTPHVEEEEKPTASV-GEDEKD----------KHAQLLALPPNGS-E 108
             E+D+  E +  D+D    EEEE+P     G+ +K+          K  ++ A  P  S  
Sbjct:   262 EEDEEEEEDEEDEDEDEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEATEPTTSFN 321

Query:   109 VFIGGLPKDASEEDLRDLCEPIGDVFEVR--LMKDKESGESKGFAFVSFRSKEFAKKAID 166
             +F+G L    S  +L+     I DVF      + D   G S+ F +V F S E  +KA+ 
Sbjct:   322 LFVGNLNFSKSASELKT---GISDVFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKAL- 377

Query:   167 ELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV--ETIELIKDPQ 224
             EL   ++ G  I+    + K+     +      ++   KV +D    V  + +E I+   
Sbjct:   378 ELTGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVE-IRLVS 436

Query:   225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS-TPD-----HSAA 278
                +++G +++ +   A A+ + ++      ++DG + ++ +   K    D     +S  
Sbjct:   437 KDGKSKGIAYIEFKTEADAEKTLEEKQGT--EIDGRSISLYYTGEKGQNQDFRGGKNSTW 494

Query:   279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALK 337
             + + K L + N+  + + E ++E+F++    T + +P  ++GK + + FI +A    A +
Sbjct:   495 SGESKTLVLSNLAYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAKE 551

Query:   338 AVKDTEKYEIDGQVLEVVLAKPQ 360
             A+    K EI+G+ + + L  P+
Sbjct:   552 ALNSCNKREIEGRAIRLELQGPR 574

 Score = 120 (47.3 bits), Expect = 0.00055, P = 0.00055
 Identities = 70/309 (22%), Positives = 125/309 (40%)

Query:    57 AGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDE----KDKHAQLLALPPNGSEVFIG 112
             A AS+ ++  E    D+D    +EEE+  +     E    K K A   A+P         
Sbjct:   180 APASDDEEEEEDEDEDEDEDEDDEEEEDDSEEEAMETVPAKGKKAPAKAVPVKAKST-AE 238

Query:   113 GLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRS---KEFAKKAIDELH 169
                ++  EED  D  +   D  E    +++E  E +            KE   K   E+ 
Sbjct:   239 DEDEEEDEEDEEDEEDDDEDEDEEEDEEEEEDEEDEDEDEEEEEEEPVKEAPGKRKKEMA 298

Query:   170 SK----ELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
              +    E K + +  +   T   LF+GN+  + +  E +  I DV      + ++     
Sbjct:   299 KQKAAPEAKKQKVEATEPTTSFNLFVGNLNFSKSASELKTGISDVF-AKNDLAVVDVRIG 357

Query:   226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
              SR   F +V +   +  D  +   L    K+ GN   I    PK     S      + L
Sbjct:   358 VSRK--FGYVDF--ESAEDLEKALELTG-LKVFGNE--IKLEKPKGKD--SKKDRDARTL 408

Query:   286 YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY 345
               KN+P   + +++KE+F+   E+ ++V   GKS  +   +I +   + A K +++ +  
Sbjct:   409 LAKNLPYKVTQDELKEVFEDAVEI-RLVSKDGKS--KGIAYIEFKTEADAEKTLEEKQGT 465

Query:   346 EIDGQVLEV 354
             EIDG+ + +
Sbjct:   466 EIDGRSISL 474

 Score = 50 (22.7 bits), Expect = 3.7e-19, Sum P(2) = 3.7e-19
 Identities = 9/40 (22%), Positives = 23/40 (57%)

Query:    56 KAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDK 95
             KA ++ +D+  E +  D++    ++E++      E+E+D+
Sbjct:   232 KAKSTAEDEDEEEDEEDEEDEEDDDEDEDEEEDEEEEEDE 271

 Score = 48 (22.0 bits), Expect = 5.9e-19, Sum P(2) = 5.9e-19
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query:    56 KAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDK 95
             KA A      A++   D+D    EE+E+      EDE ++
Sbjct:   223 KAPAKAVPVKAKSTAEDEDEEEDEEDEEDEEDDDEDEDEE 262

 Score = 46 (21.3 bits), Expect = 9.6e-19, Sum P(2) = 9.6e-19
 Identities = 14/54 (25%), Positives = 25/54 (46%)

Query:    55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSE 108
             +K G + K + ++   ++DD+   EE+E+      E    K A   A P +  E
Sbjct:   134 AKNGKNAKKEDSD-EEDEDDSEEDEEDEEEDEDDFEPAVVKGAAAAAAPASDDE 186

 Score = 39 (18.8 bits), Expect = 5.1e-18, Sum P(2) = 5.1e-18
 Identities = 10/44 (22%), Positives = 20/44 (45%)

Query:    55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQ 98
             +KA   +   +AE    ++D    E+EE       E+E ++  +
Sbjct:   226 AKAVPVKAKSTAEDEDEEEDEEDEEDEEDDDEDEDEEEDEEEEE 269


>TAIR|locus:2115169 [details] [associations]
            symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
            HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
            EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
            RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
            IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
            EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
            TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
            PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
            Uniprot:Q94AC3
        Length = 379

 Score = 177 (67.4 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
 Identities = 50/171 (29%), Positives = 84/171 (49%)

Query:   113 GLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK- 171
             G+P D   + L+D     GD+ +  +MKD+ +G S+GF +V+F S E AK A+   H   
Sbjct:     9 GIPWDIDSDGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNALKGEHFLG 68

Query:   172 ----ELKGKTIRCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
                 E+K  T +  + +      R+F+  +P + +E +FR   E  G  +  + + KD  
Sbjct:    69 NRILEVKVATPKEEMRQPAKKVTRIFVARIPSSVSESDFRSHFERYGE-ITDLYMPKD-Y 126

Query:   225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH 275
             N  ++RG  F+ +   + AD S + ++     L G T  +  A PK   DH
Sbjct:   127 NSKQHRGIGFITF---SSAD-SVEDLMEDTHDLGGTTVAVDRATPKED-DH 172

 Score = 159 (61.0 bits), Expect = 9.1e-09, P = 9.1e-09
 Identities = 62/247 (25%), Positives = 109/247 (44%)

Query:   186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADY 245
             + +L +  +P +   D  +  +   G  +E   ++KD ++  R+RGF +V +   A A+ 
Sbjct:     2 ERKLVVLGIPWDIDSDGLKDYMSKFGD-LEDCIVMKD-RSTGRSRGFGYVTF---ASAED 56

Query:   246 SRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
             ++  +   +F L      +  A PK   +    A +V  ++V  IP + S    +  F+R
Sbjct:    57 AKNALKGEHF-LGNRILEVKVATPKE--EMRQPAKKVTRIFVARIPSSVSESDFRSHFER 113

Query:   306 HGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363
             +GE+T + MP   + K  R  GFI ++   S    ++DT  +++ G  + V  A P+ D 
Sbjct:   114 YGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLMEDT--HDLGGTTVAVDRATPKEDD 171

Query:   364 KTEGTFPYSPGLVPTHLPHAGYG---GF-AGTPYGSVGTGF---GVAAGFQQPM-IYGRG 415
                   P +    P      G+G   G+ A   Y S  T +   G    +  P   YGRG
Sbjct:   172 HPPRPPPVARMSRPPVAIAGGFGAPGGYGAYDAYISAATRYAALGAPTLYDNPATFYGRG 231

Query:   416 -PMPSGM 421
              P   G+
Sbjct:   232 EPTTRGI 238

 Score = 114 (45.2 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
 Identities = 31/119 (26%), Positives = 57/119 (47%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDT 342
             ++V  +P   S + +++ F R G +    +P  P +SG R FGF+ +AE   A +  +  
Sbjct:   242 IFVGRLPQEASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTFAENGVADRVAR-- 299

Query:   343 EKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFG 401
               +EI GQ + +  A P  +    G    +  ++ +  P   +GG+ G P  + G  +G
Sbjct:   300 RSHEICGQEVAIDSATPLDEA---GPSAGASSMLSSSRPEY-FGGYGG-PMRAFGRMYG 353

 Score = 102 (41.0 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
 Identities = 19/72 (26%), Positives = 39/72 (54%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +F+  +P   SE D R   E  G++ ++ + KD  S + +G  F++F S +  +  ++
Sbjct:    91 TRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVEDLME 150

Query:   167 ELHSKELKGKTI 178
             + H  +L G T+
Sbjct:   151 DTH--DLGGTTV 160

 Score = 96 (38.9 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
 Identities = 27/96 (28%), Positives = 46/96 (47%)

Query:   187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYS 246
             N++F+G +P+  + D+ R      G  ++   + KDP+  S +RGF FV +  N  AD  
Sbjct:   240 NKIFVGRLPQEASVDDLRDYFGRFGH-IQDAYIPKDPKR-SGHRGFGFVTFAENGVAD-- 295

Query:   247 RQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV 282
               ++   + ++ G    I  A P      SA AS +
Sbjct:   296 --RVARRSHEICGQEVAIDSATPLDEAGPSAGASSM 329


>UNIPROTKB|F1P336 [details] [associations]
            symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
            EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
            Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
        Length = 689

 Score = 236 (88.1 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
 Identities = 96/360 (26%), Positives = 173/360 (48%)

Query:    80 EEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLM 139
             E+ K   S+ E++K++ A+ L         F+  LP   +E++++++ E   +  EVRL+
Sbjct:   351 EKAKSKESLKENKKERDARTL---------FVKNLPYRVTEDEMKNVFE---NALEVRLV 398

Query:   140 KDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWT 199
              +KE G SKG A++ F+++  A+KA++E    E+ G+ +    +  K++       K   
Sbjct:   399 LNKE-GSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQ---ESQKGGG 454

Query:   200 EDEFRKVIED---VGPGVETI-EL------IKDPQN-PSRNRGFSFVLYYNNACADYSRQ 248
             E E + +I +        ET+ EL      IK PQN   R +G++FV +     A+ +++
Sbjct:   455 ERESKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFVEF---PTAEDAKE 511

Query:   249 KMLNAN-FKLDGNTPTISWADPKSTPDHSAAAS----QVKALYVKNIPDNTSTEKIKELF 303
              + + N  +++G    + ++ P     +  A      Q K L+V+ + ++T+ E ++E F
Sbjct:   512 ALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESF 571

Query:   304 QRHGEVT-KVVMPPGKSGKRDFGFIHYAERSSALKAVKDT-EKYEIDGQVLEVVLAKPQT 361
             +  G ++ ++V        + FGF+ ++    A KA K+  E  EIDG  + +  AKP+ 
Sbjct:   572 E--GSISARIVTDRDTGSSKGFGFVDFSSPEDA-KAAKEAMEDGEIDGNKVTLDFAKPKG 628

Query:   362 DKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGV-AAGFQQPMIYGRGPMPSG 420
             + +  G F    G         G GGF G   G  G GFG    GF+     G    P G
Sbjct:   629 EFQRGGGF--GGGFGGRGGRGGGRGGFGGR--GG-GRGFGGRGGGFRGSRGGGGDHKPQG 683

 Score = 182 (69.1 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
 Identities = 69/317 (21%), Positives = 136/317 (42%)

Query:    61 EKDQSAEANRNDDDTPHVE---EEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKD 117
             E D+  +   ++D+ P  E   + +K  A+    E  K    +  P +   +F+  L   
Sbjct:   230 EDDEEEDEEESEDEKPVKEAPGKRKKEMANKSAPEAKKKKTEIKAPASAFSLFVKNLTPT 289

Query:   118 ASEEDLRDLCEPIGDVFEVRLMKDKES--GESKGFAFVSFRSKEFAKKAIDELHSKELKG 175
                E+LR     I + F  + ++  E   G SK F +V F S E   KA+ +L+ K+L G
Sbjct:   290 KDYEELRTA---IKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKAL-QLNGKKLMG 345

Query:   176 KTIRCSLSETKNRLFIGNVPKN----WTEDEFRKVIEDVGPGV--ETIELIKDPQNPSRN 229
               I+   +++K  L      ++    + ++   +V ED    V    +E+         +
Sbjct:   346 LEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFENALEVRLVLNKEGSS 405

Query:   230 RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ--VKALYV 287
             +G +++ +   A A+ + ++      ++DG    I +   KS  +      +   K L V
Sbjct:   406 KGMAYIEFKTEAEAEKALEEKQGT--EVDGRAMVIDYTGEKSQQESQKGGGERESKTLIV 463

Query:   288 KNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYE 346
              N+    S E ++ELF++    T + MP    G+ + + F+ +     A +A+      E
Sbjct:   464 NNLSYAASEETLQELFKK---ATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTE 520

Query:   347 IDGQVLEVVLAKPQTDK 363
             I+G+ + +  + P   K
Sbjct:   521 IEGRAIRLEFSSPSWQK 537

 Score = 156 (60.0 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
 Identities = 76/325 (23%), Positives = 135/325 (41%)

Query:    62 KDQSAEANRNDDDTPHVEEEEKPTASVGEDEK-DKHAQLLALPPNGSEVFIGGLPKDASE 120
             K +S E    DD+    EE+E+   S  EDE  D     +  P            +   E
Sbjct:   164 KQESEEEEEEDDE----EEDEEDDES--EDEAMDTTPAPVKKPTPAKATPAKAKAESEDE 217

Query:   121 EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180
             ED  D  E   D  +    +++   E         R KE A K+  E   K+ + K    
Sbjct:   218 EDEEDEDEDEEDEDDEEEDEEESEDEKPVKEAPGKRKKEMANKSAPEAKKKKTEIKAPAS 277

Query:   181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNN 240
             + S     LF+ N+      +E R  I++   G + ++ + + +  S  R F +V + + 
Sbjct:   278 AFS-----LFVKNLTPTKDYEELRTAIKEFF-GKKNLQ-VSEVRIGSSKR-FGYVDFLS- 328

Query:   241 ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIK 300
                D  +   LN   KL G    +  A  K +   +      + L+VKN+P   + +++K
Sbjct:   329 -AEDMDKALQLNGK-KLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMK 386

Query:   301 ELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ--VLEVVLAK 358
              +F+   EV  V+   G S  +   +I +   + A KA+++ +  E+DG+  V++    K
Sbjct:   387 NVFENALEVRLVLNKEGSS--KGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEK 444

Query:   359 PQTDKKTEGTFPYSPGLVPTHLPHA 383
              Q + +  G    S  L+  +L +A
Sbjct:   445 SQQESQKGGGERESKTLIVNNLSYA 469

 Score = 57 (25.1 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query:    55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEK 93
             +KA A  +D+  E + ++D+    +EEE    S  EDEK
Sbjct:   208 AKAKAESEDEEDEEDEDEDEEDEDDEEEDEEES--EDEK 244

 Score = 53 (23.7 bits), Expect = 3.5e-18, Sum P(2) = 3.5e-18
 Identities = 15/50 (30%), Positives = 23/50 (46%)

Query:    56 KAGASEKDQSAEANRNDDDTPHV-EEEEKPTASVGEDEKDKHAQLLALPP 104
             K  + E+D+  E +  D+D     +EEE+P   V    K   A + A  P
Sbjct:   109 KEESEEEDEDDEDDEEDEDEEEESDEEEEPAVPVKPAAKKSAAAVPAKKP 158

 Score = 47 (21.6 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
 Identities = 8/24 (33%), Positives = 17/24 (70%)

Query:    60 SEKDQSAEANRNDDDTPHVEEEEK 83
             ++K++S E + +D+D    E+EE+
Sbjct:   107 AKKEESEEEDEDDEDDEEDEDEEE 130


>UNIPROTKB|F1NU40 [details] [associations]
            symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
            "angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
            [GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
            DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
            GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
            GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
            EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
            ArrayExpress:F1NU40 Uniprot:F1NU40
        Length = 691

 Score = 236 (88.1 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
 Identities = 96/360 (26%), Positives = 173/360 (48%)

Query:    80 EEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLM 139
             E+ K   S+ E++K++ A+ L         F+  LP   +E++++++ E   +  EVRL+
Sbjct:   353 EKAKSKESLKENKKERDARTL---------FVKNLPYRVTEDEMKNVFE---NALEVRLV 400

Query:   140 KDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWT 199
              +KE G SKG A++ F+++  A+KA++E    E+ G+ +    +  K++       K   
Sbjct:   401 LNKE-GSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQ---ESQKGGG 456

Query:   200 EDEFRKVIED---VGPGVETI-EL------IKDPQN-PSRNRGFSFVLYYNNACADYSRQ 248
             E E + +I +        ET+ EL      IK PQN   R +G++FV +     A+ +++
Sbjct:   457 ERESKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFVEF---PTAEDAKE 513

Query:   249 KMLNAN-FKLDGNTPTISWADPKSTPDHSAAAS----QVKALYVKNIPDNTSTEKIKELF 303
              + + N  +++G    + ++ P     +  A      Q K L+V+ + ++T+ E ++E F
Sbjct:   514 ALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESF 573

Query:   304 QRHGEVT-KVVMPPGKSGKRDFGFIHYAERSSALKAVKDT-EKYEIDGQVLEVVLAKPQT 361
             +  G ++ ++V        + FGF+ ++    A KA K+  E  EIDG  + +  AKP+ 
Sbjct:   574 E--GSISARIVTDRDTGSSKGFGFVDFSSPEDA-KAAKEAMEDGEIDGNKVTLDFAKPKG 630

Query:   362 DKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGV-AAGFQQPMIYGRGPMPSG 420
             + +  G F    G         G GGF G   G  G GFG    GF+     G    P G
Sbjct:   631 EFQRGGGF--GGGFGGRGGRGGGRGGFGGR--GG-GRGFGGRGGGFRGSRGGGGDHKPQG 685

 Score = 174 (66.3 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
 Identities = 73/325 (22%), Positives = 140/325 (43%)

Query:    61 EKDQSAEANRNDDDTPHVEE--EEKPTASV-GEDEKD---KHA-----QLLALPPNGSEV 109
             E+D+  +    DD+    EE  +EKP     G+ +K+   K A     +    P +   +
Sbjct:   224 EEDEDEDEEDEDDEEEDEEESEDEKPVKEAPGKRKKEMANKSAPEAKKKKTETPASAFSL 283

Query:   110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES--GESKGFAFVSFRSKEFAKKAIDE 167
             F+  L      E+LR     I + F  + ++  E   G SK F +V F S E   KA+ +
Sbjct:   284 FVKNLTPTKDYEELRTA---IKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKAL-Q 339

Query:   168 LHSKELKGKTIRCSLSETKNRLFIGNVPKN----WTEDEFRKVIEDVGPGV--ETIELIK 221
             L+ K+L G  I+   +++K  L      ++    + ++   +V ED    V    +E+  
Sbjct:   340 LNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFENALEVRL 399

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
                    ++G +++ +   A A+ + ++      ++DG    I +   KS  +      +
Sbjct:   400 VLNKEGSSKGMAYIEFKTEAEAEKALEEKQGT--EVDGRAMVIDYTGEKSQQESQKGGGE 457

Query:   282 --VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKA 338
                K L V N+    S E ++ELF++    T + MP    G+ + + F+ +     A +A
Sbjct:   458 RESKTLIVNNLSYAASEETLQELFKK---ATSIKMPQNNQGRPKGYAFVEFPTAEDAKEA 514

Query:   339 VKDTEKYEIDGQVLEVVLAKPQTDK 363
             +      EI+G+ + +  + P   K
Sbjct:   515 LNSCNNTEIEGRAIRLEFSSPSWQK 539

 Score = 154 (59.3 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
 Identities = 77/325 (23%), Positives = 137/325 (42%)

Query:    62 KDQSAEANRNDDDTPHVEEEEKPTASVGEDEK-DKHAQLLALPPNGSEVFIGGLPKDASE 120
             K +S E    DD+    EE+E+   S  EDE  D     +  P            +   E
Sbjct:   168 KQESEEEEEEDDE----EEDEEDDES--EDEAMDTTPAPVKKPTPAKATPAKAKAESEDE 221

Query:   121 EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180
             ED  D  E   D  +    +++   E         R KE A K+  E  +K+ K +T   
Sbjct:   222 EDEEDEDEDEEDEDDEEEDEEESEDEKPVKEAPGKRKKEMANKSAPE--AKKKKTETPAS 279

Query:   181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNN 240
             + S     LF+ N+      +E R  I++   G + ++ + + +  S  R F +V + + 
Sbjct:   280 AFS-----LFVKNLTPTKDYEELRTAIKEFF-GKKNLQ-VSEVRIGSSKR-FGYVDFLS- 330

Query:   241 ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIK 300
                D  +   LN   KL G    +  A  K +   +      + L+VKN+P   + +++K
Sbjct:   331 -AEDMDKALQLNGK-KLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMK 388

Query:   301 ELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ--VLEVVLAK 358
              +F+   EV  V+   G S  +   +I +   + A KA+++ +  E+DG+  V++    K
Sbjct:   389 NVFENALEVRLVLNKEGSS--KGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEK 446

Query:   359 PQTDKKTEGTFPYSPGLVPTHLPHA 383
              Q + +  G    S  L+  +L +A
Sbjct:   447 SQQESQKGGGERESKTLIVNNLSYA 471

 Score = 57 (25.1 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query:    55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEK 93
             +KA A  +D+  E + ++D+    +EEE    S  EDEK
Sbjct:   212 AKAKAESEDEEDEEDEDEDEEDEDDEEEDEEES--EDEK 248

 Score = 53 (23.7 bits), Expect = 3.5e-18, Sum P(2) = 3.5e-18
 Identities = 15/50 (30%), Positives = 23/50 (46%)

Query:    56 KAGASEKDQSAEANRNDDDTPHV-EEEEKPTASVGEDEKDKHAQLLALPP 104
             K  + E+D+  E +  D+D     +EEE+P   V    K   A + A  P
Sbjct:   113 KEESEEEDEDDEDDEEDEDEEEESDEEEEPAVPVKPAAKKSAAAVPAKKP 162

 Score = 47 (21.6 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
 Identities = 8/24 (33%), Positives = 17/24 (70%)

Query:    60 SEKDQSAEANRNDDDTPHVEEEEK 83
             ++K++S E + +D+D    E+EE+
Sbjct:   111 AKKEESEEEDEDDEDDEEDEDEEE 134


>UNIPROTKB|E9PTI5 [details] [associations]
            symbol:E9PTI5 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00550000074656 IPI:IPI01007589
            Ensembl:ENSRNOT00000011480 Uniprot:E9PTI5
        Length = 567

 Score = 239 (89.2 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
 Identities = 89/340 (26%), Positives = 159/340 (46%)

Query:    82 EKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD 141
             EKP    G D K   A    L  N        L  + +E++L+++ E   D  E+RL+  
Sbjct:   237 EKPK---GRDSKKVRAARTLLAKN--------LSFNITEDELKEVFE---DAVEIRLVS- 281

Query:   142 KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKN--WT 199
              + G SKG A++ F+S+  A+K ++E    E+ G+++    +  K +       KN  W+
Sbjct:   282 -QDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQ-ERTGKNSTWS 339

Query:   200 EDEFRKVIEDVGPGV--ETIE-------LIKDPQNP-SRNRGFSFVLYYNNACADYSRQK 249
              +    V+ ++      ET++        IK PQNP  +++G++F+ +   A  + +++ 
Sbjct:   340 GESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNPHGKSKGYAFIEF---ASFEDAKEA 396

Query:   250 MLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308
             + + N  +++G T  +    P+ +P+  A +   K L+VK + ++T+ E +KE F+  G 
Sbjct:   397 LNSCNKMEIEGRTIRLELQGPRGSPN--ARSQPSKTLFVKGLSEDTTEETLKESFE--GS 452

Query:   309 VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEG 367
             V   ++   ++G  + FGF+ +     A  A +  E  EIDG  + +  AKP+      G
Sbjct:   453 VRARIVTDRETGSSKGFGFVDFNSEEDAKTAKEAMEDGEIDGNKVTLDWAKPKGKGGFGG 512

Query:   368 TFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQ 407
                   G         G GGF G   G    GFG   GF+
Sbjct:   513 RGGGRGGFGGRGGGRGGRGGFGGRGRG----GFGGRGGFR 548

 Score = 215 (80.7 bits), Expect = 1.0e-14, P = 1.0e-14
 Identities = 88/329 (26%), Positives = 154/329 (46%)

Query:    61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPN-----GSE------V 109
             E+D+  E    +DD    EEEE   A+ G+ +K+   Q  A         GSE      +
Sbjct:   110 EEDEDEEDEDEEDDEDEEEEEEPVKAAPGKRKKEMTKQKEAPEAKKQKIEGSEPTTPFNL 169

Query:   110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMK--DKESGESKGFAFVSFRSKEFAKKAIDE 167
             FIG L K  +E     L   I D+F    +   D  +G ++ F +V F S E  +KA+ E
Sbjct:   170 FIGNLNKSVAE-----LKVAISDLFAKNDLAAVDVRTGTNRKFGYVDFESAEDLEKAL-E 223

Query:   168 LHSKELKGKTIRCSLSETKNR----------LFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
             L   ++ G  I+  L + K R          L   N+  N TEDE ++V ED    VE I
Sbjct:   224 LTGLKVFGNEIK--LEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDA---VE-I 277

Query:   218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS-----T 272
              L+       R++G +++ + + A A+ + ++   A  ++DG + ++ +   K      T
Sbjct:   278 RLVSQD---GRSKGIAYIEFKSEADAEKNLEEKQGA--EIDGRSVSLYYTGEKGQRQERT 332

Query:   273 PDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAE 331
               +S  + + K L + N+  + + E ++E+F++    T + +P    GK + + FI +A 
Sbjct:   333 GKNSTWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNPHGKSKGYAFIEFAS 389

Query:   332 RSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360
                A +A+    K EI+G+ + + L  P+
Sbjct:   390 FEDAKEALNSCNKMEIEGRTIRLELQGPR 418

 Score = 164 (62.8 bits), Expect = 5.5e-09, P = 5.5e-09
 Identities = 56/223 (25%), Positives = 106/223 (47%)

Query:    60 SEKDQSAEANRNDDDTPHVEEEEKPTASVGE--DEKDKHAQLLALPPNGSEVFIGGLPKD 117
             SE D  AE N  +     ++         GE    +++  +          + +  L   
Sbjct:   296 SEAD--AEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYS 353

Query:   118 ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177
             A+EE L+++ E     F +++ ++   G+SKG+AF+ F S E AK+A++  +  E++G+T
Sbjct:   354 ATEETLQEVFEKA--TF-IKVPQNPH-GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRT 409

Query:   178 IRCSL----------SETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS 227
             IR  L          S+    LF+  + ++ TE+  ++  E    G     ++ D +  S
Sbjct:   410 IRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE----GSVRARIVTDRETGS 465

Query:   228 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
              ++GF FV + +   A  +++ M +   ++DGN  T+ WA PK
Sbjct:   466 -SKGFGFVDFNSEEDAKTAKEAMEDG--EIDGNKVTLDWAKPK 505

 Score = 50 (22.7 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query:    58 GASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALP 103
             G      + + +R++D+    E+EE       EDE+++   + A P
Sbjct:    92 GKKNGKNAKKEDRDEDEDEEDEDEEDEDEEDDEDEEEEEEPVKAAP 137


>UNIPROTKB|F1Q0B0 [details] [associations]
            symbol:NCL "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0042162 "telomeric DNA binding" evidence=IEA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008022
            "protein C-terminus binding" evidence=IEA] [GO:0005938 "cell
            cortex" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
            [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005938 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0030529 GO:GO:0042162
            KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691 OMA:KERDTRT
            EMBL:AAEX03014432 RefSeq:XP_850477.2 Ensembl:ENSCAFT00000017622
            GeneID:608445 KEGG:cfa:608445 Uniprot:F1Q0B0
        Length = 715

 Score = 241 (89.9 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
 Identities = 91/354 (25%), Positives = 167/354 (47%)

Query:    82 EKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD 141
             EKP     + +KD+ A+ L L  N        LP   ++++L+++ E   D  E+RL+  
Sbjct:   384 EKPKGK--DSKKDRDARTL-LAKN--------LPYKVTQDELKEVFE---DAVEIRLVS- 428

Query:   142 KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRL--FIGNVPKNWT 199
              + G+SKG A++ F+++  A+K  +E    E+ G++I    +  K +   + G     W+
Sbjct:   429 -KDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQSQDYRGGKNSTWS 487

Query:   200 EDEFRKVIEDVGPGV--ETIE-------LIKDPQNPS-RNRGFSFVLYYNNACADYSRQK 249
              +    V+ ++      ET++        IK PQN + +++G++F+ +   A  + +++ 
Sbjct:   488 GESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEF---ASFEDAKEA 544

Query:   250 MLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308
             + + N + ++G    +    P+ +P+  A +   K L+VK + ++T+ E +KE F   G 
Sbjct:   545 LNSCNKREIEGRAIRLELQGPRGSPN--ARSQPSKTLFVKGLSEDTTEETLKESFD--GS 600

Query:   309 VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT-EKYEIDGQVLEVVLAKPQTDKKTE 366
             V   ++   ++G  + FGF+ +     A KA K+  E  EIDG  + +  AKP+ +    
Sbjct:   601 VRARIVTDRETGSSKGFGFVDFNSEEDA-KAAKEAMEDGEIDGNKVTLDWAKPKGEGGFG 659

Query:   367 GTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSG 420
             G      G         G GGF G   G    GFG   GF+     G    P G
Sbjct:   660 GRGGGRGGFGGRGGGRRGQGGFGGRGRG----GFGGRGGFRGGRGGGGDHKPQG 709

 Score = 161 (61.7 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 70/322 (21%), Positives = 149/322 (46%)

Query:    61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKD----------KHAQLLALPPNGS-EV 109
             E+D+  +   ++++    EEEE    + G+ +K+          K  ++ A  P  S  +
Sbjct:   255 EEDEDDDEEEDEEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEATEPTTSFNL 314

Query:   110 FIGGLPKDASEEDLRDLCEPIGDVFEVR--LMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             F+G L    S  +L+     I D+F      + D   G S+ F +V F S E  +KA+ E
Sbjct:   315 FVGNLNFSKSAPELKT---GISDLFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKAL-E 370

Query:   168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV--ETIELIKDPQN 225
             L   ++ G  I+    + K+     +      ++   KV +D    V  + +E I+    
Sbjct:   371 LTGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVE-IRLVSK 429

Query:   226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS-TPDH-----SAAA 279
               +++G +++ +   A A+ + ++      ++DG + ++ +   K  + D+     S  +
Sbjct:   430 DGKSKGIAYIEFKTEADAEKTFEEKQGT--EIDGRSISLYYTGEKGQSQDYRGGKNSTWS 487

Query:   280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKA 338
              + K L + N+  + + E ++E+F++    T + +P  ++GK + + FI +A    A +A
Sbjct:   488 GESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQNGKSKGYAFIEFASFEDAKEA 544

Query:   339 VKDTEKYEIDGQVLEVVLAKPQ 360
             +    K EI+G+ + + L  P+
Sbjct:   545 LNSCNKREIEGRAIRLELQGPR 566

 Score = 129 (50.5 bits), Expect = 5.6e-05, P = 5.6e-05
 Identities = 70/305 (22%), Positives = 129/305 (42%)

Query:    57 AGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDE----KDKHAQLLALPPNGSEVFIG 112
             A AS++++  E + ++DD    E+E++  +     E    K K A + A+P         
Sbjct:   179 APASDEEEDDEEDDDEDDDEEDEDEDEDDSEEEAMETTPAKGKKAPVKAVPVKAKSTAED 238

Query:   113 GLPK--DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFV-SFRSKEFAKKAIDELH 169
                +  D  EED  +  E   D  E    +++E  E +        R KE AK+      
Sbjct:   239 EDEEEDDEDEEDDDEEEEDEDDDEEEDEEEEEEEEEEEPVKEAPGKRKKEMAKQKA---- 294

Query:   170 SKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRN 229
             + E K + +  +   T   LF+GN+  + +  E +  I D+      + ++      SR 
Sbjct:   295 APEAKKQKVEATEPTTSFNLFVGNLNFSKSAPELKTGISDLF-AKNDLAVVDVRIGVSRK 353

Query:   230 RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKN 289
               F +V +   +  D  +   L    K+ GN   I    PK     S      + L  KN
Sbjct:   354 --FGYVDF--ESAEDLEKALELTG-LKVFGNE--IKLEKPKGKD--SKKDRDARTLLAKN 404

Query:   290 IPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349
             +P   + +++KE+F+   E+ ++V   GKS  +   +I +   + A K  ++ +  EIDG
Sbjct:   405 LPYKVTQDELKEVFEDAVEI-RLVSKDGKS--KGIAYIEFKTEADAEKTFEEKQGTEIDG 461

Query:   350 QVLEV 354
             + + +
Sbjct:   462 RSISL 466

 Score = 49 (22.3 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
 Identities = 12/43 (27%), Positives = 23/43 (53%)

Query:    56 KAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQ 98
             KA ++ +D+  E +  D++    EEEE       EDE+++  +
Sbjct:   231 KAKSTAEDEDEEEDDEDEEDDD-EEEEDEDDDEEEDEEEEEEE 272

 Score = 43 (20.2 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
 Identities = 11/39 (28%), Positives = 17/39 (43%)

Query:    56 KAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKD 94
             KA        A++   D+D    +E+E+      EDE D
Sbjct:   222 KAPVKAVPVKAKSTAEDEDEEEDDEDEEDDDEEEEDEDD 260

 Score = 43 (20.2 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
 Identities = 9/49 (18%), Positives = 24/49 (48%)

Query:    55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALP 103
             S A   ++++  E   +DD+    E++++      E+E+++   +   P
Sbjct:   234 STAEDEDEEEDDEDEEDDDEEEEDEDDDEEEDEEEEEEEEEEEPVKEAP 282

 Score = 38 (18.4 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query:    55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKD 94
             +KAG ++ D    A       P   EE+     + EDE D
Sbjct:     5 AKAGKNQSDPKKMA-----PPPKEVEEDSEDEEMSEDEDD 39


>UNIPROTKB|Q4R4J7 [details] [associations]
            symbol:NCL "Nucleolin" species:9541 "Macaca fascicularis"
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
            "ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
            DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 OrthoDB:EOG45MN5J
            EMBL:AB169897 EMBL:AB168220 ProteinModelPortal:Q4R4J7 SMR:Q4R4J7
            PRIDE:Q4R4J7 Uniprot:Q4R4J7
        Length = 711

 Score = 240 (89.5 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
 Identities = 83/322 (25%), Positives = 155/322 (48%)

Query:   114 LPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL 173
             LP   ++++L+++ E   D  E+RL+   + G+SKG A++ F+++  A+K  +E    E+
Sbjct:   401 LPYKVTQDELKEVFE---DAAEIRLVS--KDGKSKGIAYIEFKTEADAEKTFEEKQGTEI 455

Query:   174 KGKTIRCSLSETK--NRLFIGNVPKNWTEDEFRKVIEDVGPGV--ETIE-------LIKD 222
              G++I    +  K  N+ + G     W+ +    V+ ++      ET++        IK 
Sbjct:   456 DGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKV 515

Query:   223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPKSTPDHSAAAS 280
             PQN + +++G++F+ +   A  + +++ + + N + ++G    +    P+ +P+  A + 
Sbjct:   516 PQNQNGKSKGYAFIEF---ASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPN--ARSQ 570

Query:   281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAV 339
               K L+VK + ++T+ E +KE F   G V   ++   ++G  + FGF+ +     A KA 
Sbjct:   571 PSKTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDA-KAA 627

Query:   340 KDT-EKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGT 398
             K+  E  EIDG  + +  AKP+ +    G      G         G GGF G   G    
Sbjct:   628 KEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGRGGGRGGRGGFGGRGRG---- 683

Query:   399 GFGVAAGFQQPMIYGRGPMPSG 420
             GFG   GF+     G    P G
Sbjct:   684 GFGGRGGFRGGRGGGGDHKPQG 705

 Score = 163 (62.4 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
 Identities = 45/166 (27%), Positives = 89/166 (53%)

Query:   111 IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170
             +  L   A+EE L+++ E     F +++ ++ ++G+SKG+AF+ F S E AK+A++  + 
Sbjct:   491 LSNLSYSATEETLQEVFEKA--TF-IKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNK 546

Query:   171 KELKGKTIRCSLSETKNRLFIGNVP------KNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
             +E++G+ IR  L   +      + P      K  +ED   + +++   G     ++ D +
Sbjct:   547 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRE 606

Query:   225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
               S ++GF FV + +   A  +++ M +   ++DGN  T+ WA PK
Sbjct:   607 TGS-SKGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPK 649

 Score = 132 (51.5 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 68/299 (22%), Positives = 121/299 (40%)

Query:    57 AGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPK 116
             A   E D+  E + ++DD    ++ E+        +  K A+++ +              
Sbjct:   183 ASEDEDDEDDEDDEDEDDDDEEDDSEEEAMETTPAKGKKAAKVVPVKAKNVAEDEDEEED 242

Query:   117 DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK-KAIDELHSKELKG 175
             D  E+D  D  +   D  +    +++E  E    A    R KE AK KA  E   ++++G
Sbjct:   243 DEDEDDDDDEDDEDEDDDDEDEEEEEEEEEPVKEA-PGKRKKEMAKQKAAPEAKKQKVEG 301

Query:   176 KTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFV 235
                      T   LF+GN+  N +  E +  I DV       +L          R F +V
Sbjct:   302 TE-----PTTAFNLFVGNLNFNKSAPELKTGISDV---FAKNDLAVVDVRIGMTRKFGYV 353

Query:   236 LYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTS 295
              +   +  D  +   L    K+ GN   I    PK     S      + L  KN+P   +
Sbjct:   354 DF--ESAEDLEKALELTG-LKVFGNE--IKLEKPKGKD--SKKERDARTLLAKNLPYKVT 406

Query:   296 TEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354
              +++KE+F+   E+ ++V   GKS  +   +I +   + A K  ++ +  EIDG+ + +
Sbjct:   407 QDELKEVFEDAAEI-RLVSKDGKS--KGIAYIEFKTEADAEKTFEEKQGTEIDGRSISL 462

 Score = 127 (49.8 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query:   109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
             +F+ GL +D +EE L++  +  G V   R++ D+E+G SKGF FV F S+E AK A + +
Sbjct:   575 LFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 631

Query:   169 HSKELKGKTIRCSLSETK 186
                E+ G  +    ++ K
Sbjct:   632 EDGEIDGNKVTLDWAKPK 649

 Score = 50 (22.7 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query:    61 EKDQSAEANRNDDDTPHVEEEEKPT-------ASVGEDEKDK 95
             E+D S E + +D+D    E+E +P        A   EDE D+
Sbjct:   149 EEDDSEEDDEDDEDEDEDEDEIEPAVMKAAAAAPASEDEDDE 190

 Score = 48 (22.0 bits), Expect = 4.1e-18, Sum P(2) = 4.1e-18
 Identities = 11/49 (22%), Positives = 23/49 (46%)

Query:    55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALP 103
             +K  A ++D+  +    DDD    +E+E       E+E+++   +   P
Sbjct:   230 AKNVAEDEDEEEDDEDEDDDDDEDDEDEDDDDEDEEEEEEEEEPVKEAP 278

 Score = 40 (19.1 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
 Identities = 10/40 (25%), Positives = 19/40 (47%)

Query:    55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKD 94
             +K G + K + ++    DD     EE+++      EDE +
Sbjct:   134 AKNGKNAKKEDSDEEEEDDS----EEDDEDDEDEDEDEDE 169

 Score = 38 (18.4 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query:    55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKD 94
             +KAG ++ D    A       P   EE+     + EDE+D
Sbjct:     5 AKAGKNQGDPKKMA-----PPPKEVEEDSEDEEMSEDEED 39


>RGD|1311201 [details] [associations]
            symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
            GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
            IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
            MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
            KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
            NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
        Length = 643

 Score = 244 (91.0 bits), Expect = 6.2e-18, P = 6.2e-18
 Identities = 67/266 (25%), Positives = 131/266 (49%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  D +E  L +   P G +  +R+ +D+ +  S G+A V+F+  E A++A+D
Sbjct:    11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALD 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++   +KGK +R   S+    L    +GN+  KN       K + D       I   K 
Sbjct:    71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDRSIDSKTLYDTFSAFGNILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               + + ++G+ FV +     A+ + +KM N  F  D       +   +    +  A A +
Sbjct:   131 VCDENGSKGYGFVHFETQEEAERAIEKM-NGMFLNDRKVFVGRFKSRRDRQAELGARAKE 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
                +Y+KN+ ++   E++++LF R G    V +   +SGK + FGF+ +     A KAV 
Sbjct:   190 FTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVD 249

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
             +    +++G+ + V  A+ + +++TE
Sbjct:   250 EMNGKDLNGKQIYVGRAQKKVERQTE 275

 Score = 177 (67.4 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
 Identities = 39/97 (40%), Positives = 58/97 (59%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  +D+ A+L A     + V+I  L +D  +E L+DL    G    V++M D ESG+SKG
Sbjct:   174 KSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTD-ESGKSKG 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
             F FVSF   E A+KA+DE++ K+L GK I    ++ K
Sbjct:   233 FGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKK 269

 Score = 120 (47.3 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
 Identities = 43/157 (27%), Positives = 71/157 (45%)

Query:   236 LYYNNACADYSRQKMLNANF-KLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNT 294
             +Y   A     RQ  L   F ++  + P I    P+   D S     V  LYVKN+ D  
Sbjct:   261 IYVGRAQKKVERQTELKHKFGQMKQDKPKIEQV-PQ---DRSVRCQGVN-LYVKNLDDGI 315

Query:   295 STEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVL 352
               E++++ F   G +T  KV M  G+S  + FGF+ ++    A KAV +     +  + L
Sbjct:   316 DDERLRKEFSPFGTITSAKVTMEGGRS--KGFGFVCFSSPEEATKAVTEMNGRIVATKPL 373

Query:   353 EVVLAKPQTDKKTEGTFPYSPGLVPTH-LPHAGYGGF 388
              V LA+ + +++   +  Y   +  T  +P+ G   F
Sbjct:   374 YVALAQRKEERQAHLSNQYMQRMASTSAVPNPGINPF 410

 Score = 48 (22.0 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query:   176 KTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFV 235
             +++RC   +  N L++ N+     ++  RK     G    TI   K      R++GF FV
Sbjct:   297 RSVRC---QGVN-LYVKNLDDGIDDERLRKEFSPFG----TITSAKVTMEGGRSKGFGFV 348

Query:   236 LY 237
              +
Sbjct:   349 CF 350


>UNIPROTKB|I3LS00 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
            mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
            "poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
            GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
            GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
            Uniprot:I3LS00
        Length = 647

 Score = 241 (89.9 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 67/266 (25%), Positives = 129/266 (48%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  D +E  L +   P G +  +R+ +D  +  S G+A+V+F+    A++A+D
Sbjct:    11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++   +KGK +R   S+    L    +GN+  KN  +    K + D       I   K 
Sbjct:    71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               + + ++G+ FV +     A+ + +KM N     D       +   K    +  A A +
Sbjct:   131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
                +Y+KN  ++   E++K+LF + G    V +   +SGK + FGF+ +     A KAV 
Sbjct:   190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
             +    E++G+ + V  A+ + +++TE
Sbjct:   250 EMNGKELNGKQIYVGRAQKKVERQTE 275

 Score = 174 (66.3 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
 Identities = 39/97 (40%), Positives = 57/97 (58%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  K++ A+L A     + V+I    +D  +E L+DL    G    V++M D ESG+SKG
Sbjct:   174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
             F FVSF   E A+KA+DE++ KEL GK I    ++ K
Sbjct:   233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269

 Score = 120 (47.3 bits), Expect = 0.00048, P = 0.00048
 Identities = 51/224 (22%), Positives = 100/224 (44%)

Query:   162 KKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             K  +    S++ +   +     E  N ++I N  ++  ++  + +    GP + +++++ 
Sbjct:   167 KVFVGRFKSRKEREAELGARAKEFTN-VYIKNFGEDMDDERLKDLFGKFGPAL-SVKVMT 224

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--STPDHSAAA 279
             D    S+  GF FV +  +  A  +  +M N   +L+G    +  A  K     +     
Sbjct:   225 DESGKSK--GFGFVSFERHEDAQKAVDEM-NGK-ELNGKQIYVGRAQKKVERQTELKRKF 280

Query:   280 SQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFI 327
              Q+K           LYVKN+ D    E++++ F   G +T  KV+M  G+S  + FGF+
Sbjct:   281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS--KGFGFV 338

Query:   328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
              ++    A KAV +     +  + L V LA+ + +++   T  Y
Sbjct:   339 CFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382

 Score = 47 (21.6 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 24/104 (23%), Positives = 38/104 (36%)

Query:   333 SSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTH----LPHAGYGGF 388
             SS +  V  T++ E+ G   E+  +   T  +T G  P +     T     +P   Y   
Sbjct:   470 SSQVPRVMSTQRVEV-GLQFEIT-SSANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAG 527

Query:   389 AGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQ 432
                P   +     V    QQP ++ +G  P    M+    P  Q
Sbjct:   528 VRNPQQHLNAQPQVT--MQQPAVHVQGQEPLTASMLASAPPQEQ 569


>UNIPROTKB|E1B8K6 [details] [associations]
            symbol:NCL "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K11294
            GeneTree:ENSGT00550000074656 CTD:4691 EMBL:DAAA02006195
            IPI:IPI00971535 RefSeq:NP_001193589.1 UniGene:Bt.107977
            UniGene:Bt.108558 UniGene:Bt.7403 UniGene:Bt.79166
            ProteinModelPortal:E1B8K6 IntAct:E1B8K6 PRIDE:E1B8K6
            Ensembl:ENSBTAT00000021529 GeneID:497013 KEGG:bta:497013
            OMA:RLEYSQS NextBio:20865826 Uniprot:E1B8K6
        Length = 720

 Score = 235 (87.8 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
 Identities = 91/354 (25%), Positives = 168/354 (47%)

Query:    82 EKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD 141
             EKP     + +KD+ A+ L L  N        LP   ++++L+++ E   D  E+RL+  
Sbjct:   389 EKPKGK--DSKKDRDARTL-LAKN--------LPYKVTQDELKEVFE---DAVEIRLVS- 433

Query:   142 KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKN--WT 199
              + G+SKG A++ F+++  A+K ++E    E+ G++I    +  K +       KN  W+
Sbjct:   434 -KDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDGRSISLYYTGEKGQSQDHRGGKNSTWS 492

Query:   200 EDEFRKVIEDVGPGV--ETIEL-------IKDPQNPS-RNRGFSFVLYYNNACADYSRQK 249
              +    V+ ++      ET++        IK PQN + +++G++F+ +   A  + +++ 
Sbjct:   493 GESKTLVLSNLSYSATEETLQEVFEKATHIKVPQNQNGKSKGYAFIEF---ASFEDAKEA 549

Query:   250 MLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308
             + + N + ++G    +    P+ +P+  A +   K L+VK + ++T+ E +KE F   G 
Sbjct:   550 LNSCNKREIEGRAIRLELQGPRGSPN--ARSQPSKTLFVKGLSEDTTEETLKESFD--GS 605

Query:   309 VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT-EKYEIDGQVLEVVLAKPQTDKKTE 366
             +   ++   ++G  + FGF+ +     A KA K+  E  EIDG  + +  AKP+ +    
Sbjct:   606 IRARIVTDRETGSSKGFGFVDFNSEEDA-KAAKEAMEDGEIDGNKVTLDWAKPKGEGGFG 664

Query:   367 GTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSG 420
             G      G         G GGF G   G    GFG   GF+     G    P G
Sbjct:   665 GRGGGRGGFGGRGGGRGGRGGFGGRGRG----GFGGRGGFRGGRGGGGDHKPQG 714

 Score = 169 (64.5 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 71/323 (21%), Positives = 147/323 (45%)

Query:    61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPP------NGSE------ 108
             + D+  +    +++    EEEE+P        K + A+  A P        G+E      
Sbjct:   259 DDDEDDDDEEEEEEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTSFN 318

Query:   109 VFIGGLPKDASEEDLRDLCEPIGDVFEVR--LMKDKESGESKGFAFVSFRSKEFAKKAID 166
             +F+G L  + S  +L+     I D+F      + D   G S+ F +V F S E  +KA+ 
Sbjct:   319 LFVGNLNFNKSAPELKT---GISDLFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKAL- 374

Query:   167 ELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV--ETIELIKDPQ 224
             EL   ++ G  I+    + K+     +      ++   KV +D    V  + +E I+   
Sbjct:   375 ELTGLKVFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDAVE-IRLVS 433

Query:   225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS-TPDH-----SAA 278
                +++G +++ +   A A+ + ++      ++DG + ++ +   K  + DH     S  
Sbjct:   434 KDGKSKGIAYIEFKTEADAEKTLEEKQGT--EIDGRSISLYYTGEKGQSQDHRGGKNSTW 491

Query:   279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALK 337
             + + K L + N+  + + E ++E+F++    T + +P  ++GK + + FI +A    A +
Sbjct:   492 SGESKTLVLSNLSYSATEETLQEVFEK---ATHIKVPQNQNGKSKGYAFIEFASFEDAKE 548

Query:   338 AVKDTEKYEIDGQVLEVVLAKPQ 360
             A+    K EI+G+ + + L  P+
Sbjct:   549 ALNSCNKREIEGRAIRLELQGPR 571

 Score = 132 (51.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
 Identities = 72/307 (23%), Positives = 126/307 (41%)

Query:    67 EANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLP----------- 115
             E + +DDD    EEEE       ED+ ++    + +P  G +  +  +P           
Sbjct:   184 EDDEDDDDDDDEEEEEDEEDEEDEDDSEEEPMEI-VPAKGKKAPVKAVPVKAKSTAEDED 242

Query:   116 -------KDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK-KAIDE 167
                     D  EE+  D  E   D  E    +++E  E         R KE AK KA  E
Sbjct:   243 EEDDDDDDDEEEEEEDDDDEDDDDEEEEEEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPE 302

Query:   168 LHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS 227
                ++++G     S +     LF+GN+  N +  E +  I D+      + ++      S
Sbjct:   303 AKKQKVEGTEPTTSFN-----LFVGNLNFNKSAPELKTGISDLF-AKNDLAVVDVRIGVS 356

Query:   228 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYV 287
             R   F +V +   +  D  +   L    K+ GN   I    PK     S      + L  
Sbjct:   357 RK--FGYVDF--ESAEDLEKALELTG-LKVFGNE--IKLEKPKGKD--SKKDRDARTLLA 407

Query:   288 KNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI 347
             KN+P   + +++KE+F+   E+ ++V   GKS  +   +I +   + A K +++ +  EI
Sbjct:   408 KNLPYKVTQDELKEVFEDAVEI-RLVSKDGKS--KGIAYIEFKTEADAEKTLEEKQGTEI 464

Query:   348 DGQVLEV 354
             DG+ + +
Sbjct:   465 DGRSISL 471

 Score = 55 (24.4 bits), Expect = 3.3e-18, Sum P(2) = 3.3e-18
 Identities = 11/43 (25%), Positives = 24/43 (55%)

Query:    56 KAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQ 98
             KA ++ +D+  E + +DDD    EE++       E+E+++  +
Sbjct:   233 KAKSTAEDEDEEDDDDDDDEEEEEEDDDDEDDDDEEEEEEEEE 275

 Score = 49 (22.3 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query:    61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKD 94
             + D   E   +DDD    +EEE+      E+E++
Sbjct:   248 DDDDEEEEEEDDDDEDDDDEEEEEEEEEEEEEEE 281

 Score = 48 (22.0 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query:    61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHA 97
             + ++  E + +D+D    EEEE+      E+E  K A
Sbjct:   250 DDEEEEEEDDDDEDDDDEEEEEEEEEEEEEEEPVKEA 286

 Score = 38 (18.4 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query:    66 AEANRNDDDT------PHVEEEEKPTASVGEDEKDK 95
             A+A +N  D+      P   EE+     + EDE D+
Sbjct:     5 AKAGKNQGDSKKMAPPPKEVEEDSEDEEMSEDEDDE 40


>RGD|1559517 [details] [associations]
            symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
            TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
            CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
            UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
            KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
        Length = 370

 Score = 239 (89.2 bits), Expect = 3.4e-18, P = 3.4e-18
 Identities = 74/272 (27%), Positives = 137/272 (50%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L +D +E+ L      +G V  +R+ +D  S  S G+ +V+F     A+KA++
Sbjct:    10 ASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKALE 69

Query:   167 ELHSKELKGKTIRCSLSETK---NRLFIGNV-PKNWTEDEFRKVI-EDVGP-G-VETIEL 219
              ++   +KGK+IR   S+      +  IGNV  KN  +    K + E   P G + + ++
Sbjct:    70 TMNFDLIKGKSIRLMWSQRDACLRKSGIGNVFIKNLDKSIDNKTLYEHFSPFGKIMSSKV 129

Query:   220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
             + D +    ++G+ FV Y +   AD + ++M N     D    T+  A  KS  D  A  
Sbjct:   130 MTDEEG---SKGYGFVHYQDQRAADRAIEEM-NGKLLRDS---TLFVARFKSRKDREAEL 182

Query:   280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
              +  A    +Y+KN  D+   E ++ +F ++G+   V +    SGK + FGF+ +    +
Sbjct:   183 REKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKA 242

Query:   335 ALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
             A  AV+D    +I+GQ + V  A+ + +++ E
Sbjct:   243 AKNAVEDMNGRDINGQTIFVGRAQKKVERQAE 274

 Score = 156 (60.0 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 33/97 (34%), Positives = 55/97 (56%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  KD+ A+L   P   + V+I     D  +E LR +    G    V++MKD  SG+SK 
Sbjct:   173 KSRKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDA-SGKSKR 231

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
             F FVSF S + AK A+++++ +++ G+TI    ++ K
Sbjct:   232 FGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKK 268


>RGD|3153 [details] [associations]
            symbol:Ncl "nucleolin" species:10116 "Rattus norvegicus"
          [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
          "angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
          evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO;ISS] [GO:0005634
          "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO]
          [GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
          evidence=IEA] [GO:0005938 "cell cortex" evidence=ISO] [GO:0008022
          "protein C-terminus binding" evidence=ISO] [GO:0030529
          "ribonucleoprotein complex" evidence=ISO;ISS] [GO:0042162 "telomeric
          DNA binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
          Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:3153 GO:GO:0005737
          GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
          GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
          OrthoDB:EOG45MN5J EMBL:M55022 EMBL:M55015 EMBL:M55017 EMBL:M55020
          EMBL:M22090 IPI:IPI00882501 PIR:JH0148 UniGene:Rn.144561
          UniGene:Rn.7735 ProteinModelPortal:P13383 SMR:P13383 IntAct:P13383
          STRING:P13383 PhosphoSite:P13383 PRIDE:P13383 UCSC:RGD:3153
          InParanoid:P13383 ArrayExpress:P13383 Genevestigator:P13383
          GermOnline:ENSRNOG00000018273 Uniprot:P13383
        Length = 713

 Score = 243 (90.6 bits), Expect = 3.6e-18, Sum P(2) = 3.6e-18
 Identities = 91/341 (26%), Positives = 162/341 (47%)

Query:    82 EKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD 141
             EKP    G D K   A    L  N        L  + +E++L+++ E   D  E+RL+  
Sbjct:   383 EKPK---GRDSKKVRAARTLLAKN--------LSFNITEDELKEVFE---DAVEIRLVS- 427

Query:   142 KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKN--WT 199
              + G SKG A++ F+S+  A+K ++E    E+ G+++    +  K +       KN  W+
Sbjct:   428 -QDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQ-ERTGKNSTWS 485

Query:   200 EDEFRKVIEDVGPGV--ETIE-------LIKDPQNP-SRNRGFSFVLYYNNACADYSRQK 249
              +    V+ ++      ET++        IK PQNP  +++G++F+ +   A  + +++ 
Sbjct:   486 GESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNPHGKSKGYAFIEF---ASFEDAKEA 542

Query:   250 MLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308
             + + N  +++G T  +    P+ +P+  A +   K L+VK + ++T+ E +KE F+  G 
Sbjct:   543 LNSCNKMEIEGRTIRLELQGPRGSPN--ARSQPSKTLFVKGLSEDTTEETLKESFE--GS 598

Query:   309 VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT-EKYEIDGQVLEVVLAKPQTDKKTE 366
             V   ++   ++G  + FGF+ +     A KA K+  E  EIDG  + +  AKP+ +    
Sbjct:   599 VRARIVTDRETGSSKGFGFVDFNSEEDA-KAAKEAMEDGEIDGNKVTLDWAKPKGEGGFG 657

Query:   367 GTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQ 407
             G      G         G GGF G   G    GFG   GF+
Sbjct:   658 GRGGGRGGFGGRGGGRGGRGGFGGRGRG----GFGGRGGFR 694

 Score = 183 (69.5 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
 Identities = 75/323 (23%), Positives = 150/323 (46%)

Query:    61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPN-----GSE------V 109
             E+D+  E   +D+D    EEEE   A+ G+ +K+   Q  A         GSE      +
Sbjct:   254 EEDEDEEDEEDDEDEDEEEEEEPVKAAPGKRKKEMTKQKEAPEAKKQKIEGSEPTTPFNL 313

Query:   110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMK--DKESGESKGFAFVSFRSKEFAKKAIDE 167
             FIG L  + S  +L+     I ++F    +   D  +G ++ F +V F S E  +KA+ E
Sbjct:   314 FIGNLNPNKSVAELK---VAISELFAKNDLAAVDVRTGTNRKFGYVDFESAEDLEKAL-E 369

Query:   168 LHSKELKGKTIRCSLSETKN----RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
             L   ++ G  I+    + ++    R     + KN + +     +++V      I L+   
Sbjct:   370 LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDAVEIRLVSQD 429

Query:   224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS-----TPDHSAA 278
                 R++G +++ + + A A+ + ++   A  ++DG + ++ +   K      T  +S  
Sbjct:   430 ---GRSKGIAYIEFKSEADAEKNLEEKQGA--EIDGRSVSLYYTGEKGQRQERTGKNSTW 484

Query:   279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALK 337
             + + K L + N+  + + E ++E+F++    T + +P    GK + + FI +A    A +
Sbjct:   485 SGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNPHGKSKGYAFIEFASFEDAKE 541

Query:   338 AVKDTEKYEIDGQVLEVVLAKPQ 360
             A+    K EI+G+ + + L  P+
Sbjct:   542 ALNSCNKMEIEGRTIRLELQGPR 564

 Score = 164 (62.8 bits), Expect = 7.8e-09, P = 7.8e-09
 Identities = 56/223 (25%), Positives = 106/223 (47%)

Query:    60 SEKDQSAEANRNDDDTPHVEEEEKPTASVGE--DEKDKHAQLLALPPNGSEVFIGGLPKD 117
             SE D  AE N  +     ++         GE    +++  +          + +  L   
Sbjct:   442 SEAD--AEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYS 499

Query:   118 ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177
             A+EE L+++ E     F +++ ++   G+SKG+AF+ F S E AK+A++  +  E++G+T
Sbjct:   500 ATEETLQEVFEKA--TF-IKVPQNPH-GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRT 555

Query:   178 IRCSL----------SETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS 227
             IR  L          S+    LF+  + ++ TE+  ++  E    G     ++ D +  S
Sbjct:   556 IRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE----GSVRARIVTDRETGS 611

Query:   228 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
              ++GF FV + +   A  +++ M +   ++DGN  T+ WA PK
Sbjct:   612 -SKGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPK 651

 Score = 145 (56.1 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
 Identities = 78/315 (24%), Positives = 131/315 (41%)

Query:    57 AGASE-KDQSAEANRNDDDTPHVEEEEKPTAS-VGE--DEKDKHAQLLALPPNGSEVFIG 112
             A ASE +D+  + + +DDD    EEEE  +   V E    K K      +P     V   
Sbjct:   184 APASEDEDEEDDDDEDDDDDDEEEEEEDDSEEEVMEITPAKGKKTPAKVVPVKAKSVAEE 243

Query:   113 GLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172
                 +  E++  D  E   +  E    +D+E  E    A    R KE  K+      + E
Sbjct:   244 EEDDEDDEDEEEDEDEEDEEDDED---EDEEEEEEPVKAAPGKRKKEMTKQK----EAPE 296

Query:   173 LKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGF 232
              K + I  S   T   LFIGN+  N +  E +  I ++       +L         NR F
Sbjct:   297 AKKQKIEGSEPTTPFNLFIGNLNPNKSVAELKVAISEL---FAKNDLAAVDVRTGTNRKF 353

Query:   233 SFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPD 292
              +V +   +  D  +   L    K+ GN   I    PK        A+  + L  KN+  
Sbjct:   354 GYVDF--ESAEDLEKALELTG-LKVFGNE--IKLEKPKGRDSKKVRAA--RTLLAKNLSF 406

Query:   293 NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVL 352
             N + +++KE+F+   E+ ++V   G+S  +   +I +   + A K +++ +  EIDG+ +
Sbjct:   407 NITEDELKEVFEDAVEI-RLVSQDGRS--KGIAYIEFKSEADAEKNLEEKQGAEIDGRSV 463

Query:   353 EVVLA--KPQTDKKT 365
              +     K Q  ++T
Sbjct:   464 SLYYTGEKGQRQERT 478

 Score = 45 (20.9 bits), Expect = 3.6e-18, Sum P(2) = 3.6e-18
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query:    56 KAGASEKDQSAEANRN---DDDTPHVEEEEKPTASVGEDEKDK 95
             K GA    + A+  +N   +D     +EE++  +   EDE+D+
Sbjct:   124 KKGAVTPAKGAKNGKNAKKEDSDEDEDEEDEDDSDEDEDEEDE 166

 Score = 39 (18.8 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query:    54 HSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVG 89
             ++K   S++D+  E   + D+    E+E +P    G
Sbjct:   139 NAKKEDSDEDEDEEDEDDSDEDEDEEDEFEPPVVKG 174

 Score = 38 (18.4 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
 Identities = 6/28 (21%), Positives = 17/28 (60%)

Query:    55 SKAGASEKDQSAEANRNDDDTPHVEEEE 82
             +K G + K + ++ + +++D    +E+E
Sbjct:   134 AKNGKNAKKEDSDEDEDEEDEDDSDEDE 161


>UNIPROTKB|Q5U328 [details] [associations]
            symbol:Ncl "Nucleolin, isoform CRA_c" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 RGD:3153 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 HOVERGEN:HBG002295 KO:K11294
            GeneTree:ENSGT00550000074656 CTD:4691 HOGENOM:HOG000113885
            UniGene:Rn.144561 UniGene:Rn.7735 EMBL:CH474004 OMA:ENAMEIR
            EMBL:BC085751 IPI:IPI00231827 RefSeq:NP_036881.2 SMR:Q5U328
            STRING:Q5U328 Ensembl:ENSRNOT00000024712 GeneID:25135
            KEGG:rno:25135 InParanoid:Q5U328 NextBio:605553
            Genevestigator:Q5U328 Uniprot:Q5U328
        Length = 714

 Score = 243 (90.6 bits), Expect = 3.6e-18, Sum P(2) = 3.6e-18
 Identities = 91/341 (26%), Positives = 162/341 (47%)

Query:    82 EKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD 141
             EKP    G D K   A    L  N        L  + +E++L+++ E   D  E+RL+  
Sbjct:   384 EKPK---GRDSKKVRAARTLLAKN--------LSFNITEDELKEVFE---DAVEIRLVS- 428

Query:   142 KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKN--WT 199
              + G SKG A++ F+S+  A+K ++E    E+ G+++    +  K +       KN  W+
Sbjct:   429 -QDGRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQ-ERTGKNSTWS 486

Query:   200 EDEFRKVIEDVGPGV--ETIE-------LIKDPQNP-SRNRGFSFVLYYNNACADYSRQK 249
              +    V+ ++      ET++        IK PQNP  +++G++F+ +   A  + +++ 
Sbjct:   487 GESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNPHGKSKGYAFIEF---ASFEDAKEA 543

Query:   250 MLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308
             + + N  +++G T  +    P+ +P+  A +   K L+VK + ++T+ E +KE F+  G 
Sbjct:   544 LNSCNKMEIEGRTIRLELQGPRGSPN--ARSQPSKTLFVKGLSEDTTEETLKESFE--GS 599

Query:   309 VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT-EKYEIDGQVLEVVLAKPQTDKKTE 366
             V   ++   ++G  + FGF+ +     A KA K+  E  EIDG  + +  AKP+ +    
Sbjct:   600 VRARIVTDRETGSSKGFGFVDFNSEEDA-KAAKEAMEDGEIDGNKVTLDWAKPKGEGGFG 658

Query:   367 GTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQ 407
             G      G         G GGF G   G    GFG   GF+
Sbjct:   659 GRGGGRGGFGGRGGGRGGRGGFGGRGRG----GFGGRGGFR 695

 Score = 183 (69.5 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
 Identities = 75/323 (23%), Positives = 150/323 (46%)

Query:    61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPN-----GSE------V 109
             E+D+  E   +D+D    EEEE   A+ G+ +K+   Q  A         GSE      +
Sbjct:   255 EEDEDEEDEEDDEDEDEEEEEEPVKAAPGKRKKEMTKQKEAPEAKKQKIEGSEPTTPFNL 314

Query:   110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMK--DKESGESKGFAFVSFRSKEFAKKAIDE 167
             FIG L  + S  +L+     I ++F    +   D  +G ++ F +V F S E  +KA+ E
Sbjct:   315 FIGNLNPNKSVAELK---VAISELFAKNDLAAVDVRTGTNRKFGYVDFESAEDLEKAL-E 370

Query:   168 LHSKELKGKTIRCSLSETKN----RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
             L   ++ G  I+    + ++    R     + KN + +     +++V      I L+   
Sbjct:   371 LTGLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDAVEIRLVSQD 430

Query:   224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS-----TPDHSAA 278
                 R++G +++ + + A A+ + ++   A  ++DG + ++ +   K      T  +S  
Sbjct:   431 ---GRSKGIAYIEFKSEADAEKNLEEKQGA--EIDGRSVSLYYTGEKGQRQERTGKNSTW 485

Query:   279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALK 337
             + + K L + N+  + + E ++E+F++    T + +P    GK + + FI +A    A +
Sbjct:   486 SGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNPHGKSKGYAFIEFASFEDAKE 542

Query:   338 AVKDTEKYEIDGQVLEVVLAKPQ 360
             A+    K EI+G+ + + L  P+
Sbjct:   543 ALNSCNKMEIEGRTIRLELQGPR 565

 Score = 164 (62.8 bits), Expect = 7.8e-09, P = 7.8e-09
 Identities = 56/223 (25%), Positives = 106/223 (47%)

Query:    60 SEKDQSAEANRNDDDTPHVEEEEKPTASVGE--DEKDKHAQLLALPPNGSEVFIGGLPKD 117
             SE D  AE N  +     ++         GE    +++  +          + +  L   
Sbjct:   443 SEAD--AEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYS 500

Query:   118 ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177
             A+EE L+++ E     F +++ ++   G+SKG+AF+ F S E AK+A++  +  E++G+T
Sbjct:   501 ATEETLQEVFEKA--TF-IKVPQNPH-GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRT 556

Query:   178 IRCSL----------SETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS 227
             IR  L          S+    LF+  + ++ TE+  ++  E    G     ++ D +  S
Sbjct:   557 IRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE----GSVRARIVTDRETGS 612

Query:   228 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
              ++GF FV + +   A  +++ M +   ++DGN  T+ WA PK
Sbjct:   613 -SKGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPK 652

 Score = 144 (55.7 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
 Identities = 76/317 (23%), Positives = 132/317 (41%)

Query:    57 AGASE-KDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLP 115
             A ASE +D+  + +  DDD    EEEE       ED+ ++    +  P  G +     +P
Sbjct:   184 APASEDEDEEDDDDEEDDDDDDEEEEE-------EDDSEEEVMEIT-PAKGKKTPAKVVP 235

Query:   116 KDAS-----EEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170
               A      EED  D  +   D  E     D++  E +    V     +  K+   +  +
Sbjct:   236 VKAKSVAEEEEDDEDDEDEEEDEDEEDEEDDEDEDEEEEEEPVKAAPGKRKKEMTKQKEA 295

Query:   171 KELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNR 230
              E K + I  S   T   LFIGN+  N +  E +  I ++       +L         NR
Sbjct:   296 PEAKKQKIEGSEPTTPFNLFIGNLNPNKSVAELKVAISEL---FAKNDLAAVDVRTGTNR 352

Query:   231 GFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNI 290
              F +V +   +  D  +   L    K+ GN   I    PK        A+  + L  KN+
Sbjct:   353 KFGYVDF--ESAEDLEKALELTG-LKVFGNE--IKLEKPKGRDSKKVRAA--RTLLAKNL 405

Query:   291 PDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ 350
               N + +++KE+F+   E+ ++V   G+S  +   +I +   + A K +++ +  EIDG+
Sbjct:   406 SFNITEDELKEVFEDAVEI-RLVSQDGRS--KGIAYIEFKSEADAEKNLEEKQGAEIDGR 462

Query:   351 VLEVVLA--KPQTDKKT 365
              + +     K Q  ++T
Sbjct:   463 SVSLYYTGEKGQRQERT 479

 Score = 45 (20.9 bits), Expect = 3.6e-18, Sum P(2) = 3.6e-18
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query:    56 KAGASEKDQSAEANRN---DDDTPHVEEEEKPTASVGEDEKDK 95
             K GA    + A+  +N   +D     +EE++  +   EDE+D+
Sbjct:   124 KKGAVTPAKGAKNGKNAKKEDSDEDEDEEDEDDSDEDEDEEDE 166

 Score = 39 (18.8 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query:    54 HSKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVG 89
             ++K   S++D+  E   + D+    E+E +P    G
Sbjct:   139 NAKKEDSDEDEDEEDEDDSDEDEDEEDEFEPPVVKG 174

 Score = 38 (18.4 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
 Identities = 6/28 (21%), Positives = 17/28 (60%)

Query:    55 SKAGASEKDQSAEANRNDDDTPHVEEEE 82
             +K G + K + ++ + +++D    +E+E
Sbjct:   134 AKNGKNAKKEDSDEDEDEEDEDDSDEDE 161


>UNIPROTKB|Q5R8F7 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
            granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
            evidence=ISS] [GO:2000623 "negative regulation of
            nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
            RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
            SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
            InParanoid:Q5R8F7 Uniprot:Q5R8F7
        Length = 636

 Score = 245 (91.3 bits), Expect = 4.5e-18, P = 4.5e-18
 Identities = 68/266 (25%), Positives = 130/266 (48%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  DA+E  L +   P G +  +R+ +D  +  S G+A+V+F+    A++A+D
Sbjct:    11 ASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++   +KGK +R   S+    L    +GN+  KN  +    K + D       I   K 
Sbjct:    71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               + + ++G+ FV +     A+ + +KM N     D       +   K    +  A A +
Sbjct:   131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
                +Y+KN  ++   E++K+LF + G    V +   +SGK + FGF+ +     A KAV 
Sbjct:   190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
             +    E++G+ + V  A+ + +++TE
Sbjct:   250 EMNGKELNGKQIYVGRAQKKVERQTE 275

 Score = 174 (66.3 bits), Expect = 5.1e-10, P = 5.1e-10
 Identities = 39/97 (40%), Positives = 57/97 (58%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  K++ A+L A     + V+I    +D  +E L+DL    G    V++M D ESG+SKG
Sbjct:   174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
             F FVSF   E A+KA+DE++ KEL GK I    ++ K
Sbjct:   233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269

 Score = 120 (47.3 bits), Expect = 0.00047, P = 0.00047
 Identities = 51/224 (22%), Positives = 100/224 (44%)

Query:   162 KKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             K  +    S++ +   +     E  N ++I N  ++  ++  + +    GP + +++++ 
Sbjct:   167 KVFVGRFKSRKEREAELGARAKEFTN-VYIKNFGEDMDDERLKDLFGKFGPAL-SVKVMT 224

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--STPDHSAAA 279
             D    S+  GF FV +  +  A  +  +M N   +L+G    +  A  K     +     
Sbjct:   225 DESGKSK--GFGFVSFERHEDAQKAVDEM-NGK-ELNGKQIYVGRAQKKVERQTELKRKF 280

Query:   280 SQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFI 327
              Q+K           LYVKN+ D    E++++ F   G +T  KV+M  G+S  + FGF+
Sbjct:   281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS--KGFGFV 338

Query:   328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
              ++    A KAV +     +  + L V LA+ + +++   T  Y
Sbjct:   339 CFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382


>MGI|MGI:1349722 [details] [associations]
            symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
            "protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008022 "protein C-terminus binding"
            evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
            stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
            complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISO] [GO:2000623 "negative regulation of
            nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
            eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
            GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
            GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
            EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
            EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
            EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
            PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
            ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
            STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
            PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
            KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
            CleanEx:MM_PABPC1 Genevestigator:P29341
            GermOnline:ENSMUSG00000022283 Uniprot:P29341
        Length = 636

 Score = 244 (91.0 bits), Expect = 6.0e-18, P = 6.0e-18
 Identities = 68/266 (25%), Positives = 129/266 (48%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  D +E  L +   P G +  +R+ +D  +  S G+A+V+F+    A++A+D
Sbjct:    11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++   +KGK +R   S+    L    +GN+  KN  +    K + D       I   K 
Sbjct:    71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               + + ++G+ FV +     A+ + +KM N     D       +   K    +  A A +
Sbjct:   131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
                +Y+KN  ++   E++KELF + G    V +   +SGK + FGF+ +     A KAV 
Sbjct:   190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
             +    E++G+ + V  A+ + +++TE
Sbjct:   250 EMNGKELNGKQIYVGRAQKKVERQTE 275

 Score = 170 (64.9 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 38/97 (39%), Positives = 57/97 (58%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  K++ A+L A     + V+I    +D  +E L++L    G    V++M D ESG+SKG
Sbjct:   174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKG 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
             F FVSF   E A+KA+DE++ KEL GK I    ++ K
Sbjct:   233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269

 Score = 122 (48.0 bits), Expect = 0.00028, P = 0.00028
 Identities = 51/224 (22%), Positives = 101/224 (45%)

Query:   162 KKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             K  +    S++ +   +     E  N ++I N  ++  ++  +++    GP + +++++ 
Sbjct:   167 KVFVGRFKSRKEREAELGARAKEFTN-VYIKNFGEDMDDERLKELFGKFGPAL-SVKVMT 224

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--STPDHSAAA 279
             D    S+  GF FV +  +  A  +  +M N   +L+G    +  A  K     +     
Sbjct:   225 DESGKSK--GFGFVSFERHEDAQKAVDEM-NGK-ELNGKQIYVGRAQKKVERQTELKRKF 280

Query:   280 SQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFI 327
              Q+K           LYVKN+ D    E++++ F   G +T  KV+M  G+S  + FGF+
Sbjct:   281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS--KGFGFV 338

Query:   328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
              ++    A KAV +     +  + L V LA+ + +++   T  Y
Sbjct:   339 CFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382


>RGD|619838 [details] [associations]
            symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
            binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008022 "protein C-terminus binding"
            evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
            stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
            complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
            spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
            nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
            GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
            GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
            GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
            RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
            ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
            MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
            Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
            UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
            Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
        Length = 636

 Score = 244 (91.0 bits), Expect = 6.0e-18, P = 6.0e-18
 Identities = 68/266 (25%), Positives = 129/266 (48%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  D +E  L +   P G +  +R+ +D  +  S G+A+V+F+    A++A+D
Sbjct:    11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++   +KGK +R   S+    L    +GN+  KN  +    K + D       I   K 
Sbjct:    71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               + + ++G+ FV +     A+ + +KM N     D       +   K    +  A A +
Sbjct:   131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
                +Y+KN  ++   E++KELF + G    V +   +SGK + FGF+ +     A KAV 
Sbjct:   190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
             +    E++G+ + V  A+ + +++TE
Sbjct:   250 EMNGKELNGKQIYVGRAQKKVERQTE 275

 Score = 170 (64.9 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 38/97 (39%), Positives = 57/97 (58%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  K++ A+L A     + V+I    +D  +E L++L    G    V++M D ESG+SKG
Sbjct:   174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKG 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
             F FVSF   E A+KA+DE++ KEL GK I    ++ K
Sbjct:   233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269

 Score = 122 (48.0 bits), Expect = 0.00028, P = 0.00028
 Identities = 51/224 (22%), Positives = 101/224 (45%)

Query:   162 KKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             K  +    S++ +   +     E  N ++I N  ++  ++  +++    GP + +++++ 
Sbjct:   167 KVFVGRFKSRKEREAELGARAKEFTN-VYIKNFGEDMDDERLKELFGKFGPAL-SVKVMT 224

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--STPDHSAAA 279
             D    S+  GF FV +  +  A  +  +M N   +L+G    +  A  K     +     
Sbjct:   225 DESGKSK--GFGFVSFERHEDAQKAVDEM-NGK-ELNGKQIYVGRAQKKVERQTELKRKF 280

Query:   280 SQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFI 327
              Q+K           LYVKN+ D    E++++ F   G +T  KV+M  G+S  + FGF+
Sbjct:   281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS--KGFGFV 338

Query:   328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
              ++    A KAV +     +  + L V LA+ + +++   T  Y
Sbjct:   339 CFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382


>ASPGD|ASPL0000010999 [details] [associations]
            symbol:fabM species:162425 "Emericella nidulans"
            [GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
            "biological_process" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
            GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
            GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
            EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
            STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
            GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
            Uniprot:Q5B630
        Length = 732

 Score = 238 (88.8 bits), Expect = 6.4e-18, Sum P(2) = 6.4e-18
 Identities = 74/273 (27%), Positives = 128/273 (46%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P+ + +++G L    +E  L +L   IG V  +R+ +D  +  S G+A+V++      ++
Sbjct:    39 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGER 98

Query:   164 AIDELHSKELKGKTIRCSLSETKNRLFI---GNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
             A+DEL+   +KGK  R   S+    L     GNV  KN       K + D       I  
Sbjct:    99 ALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILS 158

Query:   220 IKDPQNP-SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
              K  Q+    ++G+ FV +Y  A A  +  K +N       N   +      S  D  + 
Sbjct:   159 CKVAQDEFGVSKGYGFV-HYETAEAANNAIKHVNGMLL---NDKKVFVGHHISKKDRQSK 214

Query:   279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
               ++KA    +Y+KNI      E+ ++LF++ GE+T   +     GK R FGF++++   
Sbjct:   215 FEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHE 274

Query:   334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
             SA  AV++    E+  Q L V  A+ + +++ E
Sbjct:   275 SAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEE 307

 Score = 144 (55.7 bits), Expect = 3.8e-12, Sum P(3) = 3.8e-12
 Identities = 33/118 (27%), Positives = 64/118 (54%)

Query:    92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
             +KD+ ++   +  N + ++I  +  +  +E+ R L E  G++    L +D E G+S+GF 
Sbjct:   208 KKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGFG 266

Query:   152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWT-EDEFRKVIE 208
             FV+F + E A+ A++E++ KE++ +           +L++G   K    E+E RK  E
Sbjct:   267 FVNFSTHESAQAAVEEMNDKEVRSQ-----------KLYVGRAQKKHEREEELRKQYE 313

 Score = 114 (45.2 bits), Expect = 0.00081, Sum P(2) = 0.00081
 Identities = 48/188 (25%), Positives = 84/188 (44%)

Query:   189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
             ++I N+     ++EFRK+ E  G  + +  L +D +  SR  GF FV +  +  A  + +
Sbjct:   225 IYIKNIDPEVEDEEFRKLFEKFGE-ITSATLSRDSEGKSR--GFGFVNFSTHESAQAAVE 281

Query:   249 KMLNANFKLD----GNTPTISWADPKSTPDHSAA----ASQVKA--LYVKNIPDNTSTEK 298
             +M +   +      G        + +    + AA    AS+ +   LYVKN+ D+   +K
Sbjct:   282 EMNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDK 341

Query:   299 IKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK--AVKDTEKYEIDGQVLEVVL 356
             ++ELF  +G +T   +       RD   +  A   S  K  A K+ EK   +G+      
Sbjct:   342 LRELFGPYGTITSAKV------MRDTAPVETATPESETKESANKENEK-AAEGEKEPAAE 394

Query:   357 AKPQTDKK 364
              K + +KK
Sbjct:   395 EKEKEEKK 402

 Score = 89 (36.4 bits), Expect = 3.8e-12, Sum P(3) = 3.8e-12
 Identities = 31/111 (27%), Positives = 54/111 (48%)

Query:   256 KLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP 315
             K+  +T  +  A P+S    SA     KA   +  P   + EK KE  ++  E      P
Sbjct:   356 KVMRDTAPVETATPESETKESANKENEKAAEGEKEP--AAEEKEKEE-KKEAEQKPEKKP 412

Query:   316 PGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
              GKS  + FGF+ ++    A KAV +  +  ++G+ L V LA+ +  ++++
Sbjct:   413 LGKS--KGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 461

 Score = 49 (22.3 bits), Expect = 6.4e-18, Sum P(2) = 6.4e-18
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query:   388 FAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVP 425
             F G P G++  G G+  G   PM+ G+     G   VP
Sbjct:   551 FQGLPMGAM-QGPGIPNGMGYPMVQGQFGGGRGRGQVP 587

 Score = 40 (19.1 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query:   286 YVKNIPDNTSTEKIKELFQ 304
             Y+KN  D  + EK KE  Q
Sbjct:   705 YMKNKSDEPAAEKPKEAAQ 723


>UNIPROTKB|P19338 [details] [associations]
            symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005654
            "nucleoplasm" evidence=IEA] [GO:0008022 "protein C-terminus
            binding" evidence=IPI] [GO:0001525 "angiogenesis" evidence=IDA]
            [GO:0005938 "cell cortex" evidence=IDA] [GO:0005515 "protein
            binding" evidence=IPI] [GO:0042162 "telomeric DNA binding"
            evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0030529
            "ribonucleoprotein complex" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005938
            Pathway_Interaction_DB:telomerasepathway GO:GO:0005654
            GO:GO:0005730 Pathway_Interaction_DB:aurora_b_pathway GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0001525 GO:GO:0003723 GO:GO:0030529
            GO:GO:0042162 EMBL:AC017104 eggNOG:COG0724 HOVERGEN:HBG002295
            KO:K11294 CTD:4691 HOGENOM:HOG000113885 EMBL:M60858 EMBL:AK091742
            IPI:IPI00604620 PIR:A35804 PIR:S53728 RefSeq:NP_005372.2
            UniGene:Hs.79110 PDB:2FC8 PDB:2FC9 PDB:2KRR PDBsum:2FC8 PDBsum:2FC9
            PDBsum:2KRR ProteinModelPortal:P19338 SMR:P19338 DIP:DIP-89N
            IntAct:P19338 MINT:MINT-4999081 STRING:P19338 PhosphoSite:P19338
            DMDM:90110781 DOSAC-COBS-2DPAGE:P19338 SWISS-2DPAGE:P19338
            PaxDb:P19338 PRIDE:P19338 DNASU:4691 Ensembl:ENST00000322723
            GeneID:4691 KEGG:hsa:4691 UCSC:uc002vru.3 GeneCards:GC02M232318
            HGNC:HGNC:7667 HPA:CAB004210 HPA:HPA023981 MIM:164035
            neXtProt:NX_P19338 PharmGKB:PA31469 InParanoid:P19338 OMA:KERDTRT
            OrthoDB:EOG45MN5J PhylomeDB:P19338 ChiTaRS:NCL
            EvolutionaryTrace:P19338 GenomeRNAi:4691 NextBio:18090
            PMAP-CutDB:P19338 ArrayExpress:P19338 Bgee:P19338 CleanEx:HS_NCL
            Genevestigator:P19338 GermOnline:ENSG00000115053 Uniprot:P19338
        Length = 710

 Score = 240 (89.5 bits), Expect = 6.6e-18, Sum P(2) = 6.6e-18
 Identities = 83/322 (25%), Positives = 155/322 (48%)

Query:   114 LPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL 173
             LP   ++++L+++ E   D  E+RL+   + G+SKG A++ F+++  A+K  +E    E+
Sbjct:   400 LPYKVTQDELKEVFE---DAAEIRLVS--KDGKSKGIAYIEFKTEADAEKTFEEKQGTEI 454

Query:   174 KGKTIRCSLSETK--NRLFIGNVPKNWTEDEFRKVIEDVGPGV--ETIE-------LIKD 222
              G++I    +  K  N+ + G     W+ +    V+ ++      ET++        IK 
Sbjct:   455 DGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKV 514

Query:   223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPKSTPDHSAAAS 280
             PQN + +++G++F+ +   A  + +++ + + N + ++G    +    P+ +P+  A + 
Sbjct:   515 PQNQNGKSKGYAFIEF---ASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPN--ARSQ 569

Query:   281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAV 339
               K L+VK + ++T+ E +KE F   G V   ++   ++G  + FGF+ +     A KA 
Sbjct:   570 PSKTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDA-KAA 626

Query:   340 KDT-EKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGT 398
             K+  E  EIDG  + +  AKP+ +    G      G         G GGF G   G    
Sbjct:   627 KEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGRGGGRGGRGGFGGRGRG---- 682

Query:   399 GFGVAAGFQQPMIYGRGPMPSG 420
             GFG   GF+     G    P G
Sbjct:   683 GFGGRGGFRGGRGGGGDHKPQG 704

 Score = 163 (62.4 bits), Expect = 6.2e-09, Sum P(2) = 6.2e-09
 Identities = 45/166 (27%), Positives = 89/166 (53%)

Query:   111 IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170
             +  L   A+EE L+++ E     F +++ ++ ++G+SKG+AF+ F S E AK+A++  + 
Sbjct:   490 LSNLSYSATEETLQEVFEKA--TF-IKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNK 545

Query:   171 KELKGKTIRCSLSETKNRLFIGNVP------KNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
             +E++G+ IR  L   +      + P      K  +ED   + +++   G     ++ D +
Sbjct:   546 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRE 605

Query:   225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
               S ++GF FV + +   A  +++ M +   ++DGN  T+ WA PK
Sbjct:   606 TGS-SKGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPK 648

 Score = 138 (53.6 bits), Expect = 5.7e-06, P = 5.7e-06
 Identities = 73/300 (24%), Positives = 123/300 (41%)

Query:    57 AGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIG-GLP 115
             A   E D+  E + +DDD    + EE+   +     K K A+++  P     V       
Sbjct:   183 ASEDEDDEDDEDDEDDDDDEEDDSEEEAMETTPAKGK-KAAKVV--PVKAKNVAEDEDEE 239

Query:   116 KDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK-KAIDELHSKELK 174
             +D  +ED  D  +   D  E    +++E  E         R KE AK KA  E   ++++
Sbjct:   240 EDDEDEDDDDDEDDEDDDDEDDEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVE 299

Query:   175 GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
             G         T   LF+GN+  N +  E +  I DV       +L          R F +
Sbjct:   300 GTE-----PTTAFNLFVGNLNFNKSAPELKTGISDV---FAKNDLAVVDVRIGMTRKFGY 351

Query:   235 VLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNT 294
             V +   +  D  +   L    K+ GN   I    PK     S      + L  KN+P   
Sbjct:   352 VDF--ESAEDLEKALELTG-LKVFGNE--IKLEKPKGKD--SKKERDARTLLAKNLPYKV 404

Query:   295 STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354
             + +++KE+F+   E+ ++V   GKS  +   +I +   + A K  ++ +  EIDG+ + +
Sbjct:   405 TQDELKEVFEDAAEI-RLVSKDGKS--KGIAYIEFKTEADAEKTFEEKQGTEIDGRSISL 461

 Score = 127 (49.8 bits), Expect = 0.00038, Sum P(2) = 0.00038
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query:   109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
             +F+ GL +D +EE L++  +  G V   R++ D+E+G SKGF FV F S+E AK A + +
Sbjct:   574 LFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 630

Query:   169 HSKELKGKTIRCSLSETK 186
                E+ G  +    ++ K
Sbjct:   631 EDGEIDGNKVTLDWAKPK 648

 Score = 46 (21.3 bits), Expect = 6.6e-18, Sum P(2) = 6.6e-18
 Identities = 16/70 (22%), Positives = 28/70 (40%)

Query:    56 KAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLP 115
             K GA+   + A+  +N       EEE+  +    ED++D+      + P   +      P
Sbjct:   124 KKGAAIPAKGAKNGKNAKKEDSDEEEDDDSEEDEEDDEDEDEDEDEIEPAAMKA-AAAAP 182

Query:   116 KDASEEDLRD 125
                 E+D  D
Sbjct:   183 ASEDEDDEDD 192

 Score = 38 (18.4 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query:    55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKD 94
             +KAG ++ D    A       P   EE+     + EDE+D
Sbjct:     5 AKAGKNQGDPKKMA-----PPPKEVEEDSEDEEMSEDEED 39


>UNIPROTKB|P15771 [details] [associations]
            symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
            GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
            IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
            ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
            GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
            InParanoid:P15771 NextBio:20816253 Uniprot:P15771
        Length = 694

 Score = 230 (86.0 bits), Expect = 7.4e-18, Sum P(2) = 7.4e-18
 Identities = 92/345 (26%), Positives = 168/345 (48%)

Query:    80 EEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLM 139
             E+ K   S+ E++K++ A+ L         F+  LP   +E++++++ E   +  EVRL+
Sbjct:   353 EKAKSKESLKENKKERDARTL---------FVKNLPYRVTEDEMKNVFE---NALEVRLV 400

Query:   140 KDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWT 199
              +KE G SKG A++ F+++  A+KA++E    E+ G+ +    +  K++       K   
Sbjct:   401 LNKE-GSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQ---ESQKGGG 456

Query:   200 EDEFRKVIED---VGPGVETI-EL------IKDPQN-PSRNRGFSFVLYYNNACADYSRQ 248
             E E + +I +        ET+ EL      IK PQN   R +G++FV +     A+ +++
Sbjct:   457 ERESKTLIVNNLSYAASEETLQELFKKATSIKMPQNNQGRPKGYAFVEF---PTAEDAKE 513

Query:   249 KMLNAN-FKLDGNTPTISWADPKSTPDHSAAAS----QVKALYVKNIPDNTSTEKIKELF 303
              + + N  +++G    + ++ P     +  A      Q K L+V+ + ++T+ E ++E F
Sbjct:   514 ALNSCNNTEIEGRAIRLEFSSPSWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESF 573

Query:   304 QRHGEVT-KVVMPPGKSGKRDFGFIHYAERSSALKAVKDT-EKYEIDGQVLEVVLAKPQT 361
             +  G ++ ++V        + FGF+ ++    A KA K+  E  EIDG  + +  AKP+ 
Sbjct:   574 E--GSISARIVTDRDTGSSKGFGFVDFSSPEDA-KAAKEAMEDGEIDGNKVTLDFAKPKG 630

Query:   362 DKKTEGTFPYS-PGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAG 405
             + +  G F     G         G GGF G   G  G GFG   G
Sbjct:   631 EFQRGGGFGGGFGGRGGRGGRGGGRGGFGGR--GG-GRGFGGRGG 672

 Score = 174 (66.3 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
 Identities = 73/325 (22%), Positives = 140/325 (43%)

Query:    61 EKDQSAEANRNDDDTPHVEE--EEKPTASV-GEDEKD---KHA-----QLLALPPNGSEV 109
             E+D+  +    DD+    EE  +EKP     G+ +K+   K A     +    P +   +
Sbjct:   224 EEDEDEDEEDEDDEEEDEEESEDEKPVKEAPGKRKKEMANKSAPEAKKKKTETPASAFSL 283

Query:   110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES--GESKGFAFVSFRSKEFAKKAIDE 167
             F+  L      E+LR     I + F  + ++  E   G SK F +V F S E   KA+ +
Sbjct:   284 FVKNLTPTKDYEELRTA---IKEFFGKKNLQVSEVRIGSSKRFGYVDFLSAEDMDKAL-Q 339

Query:   168 LHSKELKGKTIRCSLSETKNRLFIGNVPKN----WTEDEFRKVIEDVGPGV--ETIELIK 221
             L+ K+L G  I+   +++K  L      ++    + ++   +V ED    V    +E+  
Sbjct:   340 LNGKKLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMKNVFENALEVRL 399

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
                    ++G +++ +   A A+ + ++      ++DG    I +   KS  +      +
Sbjct:   400 VLNKEGSSKGMAYIEFKTEAEAEKALEEKQGT--EVDGRAMVIDYTGEKSQQESQKGGGE 457

Query:   282 --VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKA 338
                K L V N+    S E ++ELF++    T + MP    G+ + + F+ +     A +A
Sbjct:   458 RESKTLIVNNLSYAASEETLQELFKK---ATSIKMPQNNQGRPKGYAFVEFPTAEDAKEA 514

Query:   339 VKDTEKYEIDGQVLEVVLAKPQTDK 363
             +      EI+G+ + +  + P   K
Sbjct:   515 LNSCNNTEIEGRAIRLEFSSPSWQK 539

 Score = 154 (59.3 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
 Identities = 77/325 (23%), Positives = 137/325 (42%)

Query:    62 KDQSAEANRNDDDTPHVEEEEKPTASVGEDEK-DKHAQLLALPPNGSEVFIGGLPKDASE 120
             K +S E    DD+    EE+E+   S  EDE  D     +  P            +   E
Sbjct:   168 KQESEEEEEEDDE----EEDEEDDES--EDEAMDTTPAPVKKPTPAKATPAKAKAESEDE 221

Query:   121 EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180
             ED  D  E   D  +    +++   E         R KE A K+  E  +K+ K +T   
Sbjct:   222 EDEEDEDEDEEDEDDEEEDEEESEDEKPVKEAPGKRKKEMANKSAPE--AKKKKTETPAS 279

Query:   181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNN 240
             + S     LF+ N+      +E R  I++   G + ++ + + +  S  R F +V + + 
Sbjct:   280 AFS-----LFVKNLTPTKDYEELRTAIKEFF-GKKNLQ-VSEVRIGSSKR-FGYVDFLS- 330

Query:   241 ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIK 300
                D  +   LN   KL G    +  A  K +   +      + L+VKN+P   + +++K
Sbjct:   331 -AEDMDKALQLNGK-KLMGLEIKLEKAKSKESLKENKKERDARTLFVKNLPYRVTEDEMK 388

Query:   301 ELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ--VLEVVLAK 358
              +F+   EV  V+   G S  +   +I +   + A KA+++ +  E+DG+  V++    K
Sbjct:   389 NVFENALEVRLVLNKEGSS--KGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEK 446

Query:   359 PQTDKKTEGTFPYSPGLVPTHLPHA 383
              Q + +  G    S  L+  +L +A
Sbjct:   447 SQQESQKGGGERESKTLIVNNLSYA 471

 Score = 57 (25.1 bits), Expect = 7.4e-18, Sum P(2) = 7.4e-18
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query:    55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEK 93
             +KA A  +D+  E + ++D+    +EEE    S  EDEK
Sbjct:   212 AKAKAESEDEEDEEDEDEDEEDEDDEEEDEEES--EDEK 248

 Score = 53 (23.7 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
 Identities = 15/50 (30%), Positives = 23/50 (46%)

Query:    56 KAGASEKDQSAEANRNDDDTPHV-EEEEKPTASVGEDEKDKHAQLLALPP 104
             K  + E+D+  E +  D+D     +EEE+P   V    K   A + A  P
Sbjct:   113 KEESEEEDEDDEDDEEDEDEEEESDEEEEPAVPVKPAAKKSAAAVPAKKP 162

 Score = 47 (21.6 bits), Expect = 8.1e-17, Sum P(2) = 8.1e-17
 Identities = 8/24 (33%), Positives = 17/24 (70%)

Query:    60 SEKDQSAEANRNDDDTPHVEEEEK 83
             ++K++S E + +D+D    E+EE+
Sbjct:   111 AKKEESEEEDEDDEDDEEDEDEEE 134


>TAIR|locus:2124261 [details] [associations]
            symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
            "translation initiation factor activity" evidence=ISS] [GO:0009651
            "response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
            "translational initiation" evidence=ISS] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
            GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
            EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
            EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
            UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
            STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
            EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
            TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
            ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
            Uniprot:P42731
        Length = 629

 Score = 242 (90.2 bits), Expect = 9.9e-18, P = 9.9e-18
 Identities = 73/275 (26%), Positives = 133/275 (48%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  + ++  L D    +G V  VR+ +D  +  S G+ +V+F + + A +AI 
Sbjct:    36 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95

Query:   167 ELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
             EL+   L GK IR   S    +  R   GN+  KN  E    K + D       I   K 
Sbjct:    96 ELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKV 155

Query:   223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
               + S +++G+ FV Y N   A  + +K LN    L+     +     +   D +A  ++
Sbjct:   156 AVDSSGQSKGYGFVQYANEESAQKAIEK-LNGML-LNDKQVYVGPFLRRQERDSTANKTK 213

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGKRDFGFIHYAERSSALKAVK 340
                +YVKN+ ++T+ + +K  F  +G++T  VVM  G+   + FGF+++     A +AV+
Sbjct:   214 FTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVE 273

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGL 375
                 ++ D +   V  A+ +++++TE    Y   L
Sbjct:   274 SLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNL 308

 Score = 152 (58.6 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 72/270 (26%), Positives = 118/270 (43%)

Query:   183 SETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNA 241
             ++TK   +++ N+ ++ T+D+ +    + G  + +  ++KD +  S+  GF FV + N  
Sbjct:   210 NKTKFTNVYVKNLAESTTDDDLKNAFGEYGK-ITSAVVMKDGEGKSK--GFGFVNFEN-- 264

Query:   242 CADYSRQ-KMLNANFKLDGNTPTISWADPKSTPD------------HSAAASQVKALYVK 288
               D +R  + LN + K D     +  A  KS  +             +A   Q   LYVK
Sbjct:   265 ADDAARAVESLNGH-KFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVK 323

Query:   289 NIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346
             N+  + S EK+KE+F   G VT  KV+  P  + K   GF+ +A    A +A+       
Sbjct:   324 NLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGS-GFVAFATPEEATEAMSQLSGKM 382

Query:   347 IDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTP-YGSVGTGFGVAAG 405
             I+ + L V +A+ + D++      +S        P  G       P Y   G G G    
Sbjct:   383 IESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVG----PRMPVYPPGGPGIG---- 434

Query:   406 FQQPMIYGRGPMPSGMHMVPMVLPDGQIGY 435
               Q M YG+ P P+   M+P   P    GY
Sbjct:   435 --QQMFYGQAP-PA---MIP---PQPGYGY 455


>UNIPROTKB|Q5RF26 [details] [associations]
            symbol:NCL "Nucleolin" species:9601 "Pongo abelii"
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
            "ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
            DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 KO:K11294 CTD:4691
            EMBL:CR857335 RefSeq:NP_001127178.1 UniGene:Pab.18146
            ProteinModelPortal:Q5RF26 SMR:Q5RF26 GeneID:100174230
            KEGG:pon:100174230 InParanoid:Q5RF26 Uniprot:Q5RF26
        Length = 712

 Score = 240 (89.5 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
 Identities = 83/322 (25%), Positives = 155/322 (48%)

Query:   114 LPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL 173
             LP   ++++L+++ E   D  E+RL+   + G+SKG A++ F+++  A+K  +E    E+
Sbjct:   402 LPYKVTQDELKEVFE---DAAEIRLVS--KDGKSKGIAYIEFKTEADAEKTFEEKQGTEI 456

Query:   174 KGKTIRCSLSETK--NRLFIGNVPKNWTEDEFRKVIEDVGPGV--ETIE-------LIKD 222
              G++I    +  K  N+ + G     W+ +    V+ ++      ET++        IK 
Sbjct:   457 DGRSISLYYTGEKGQNQDYRGGKNSTWSGESKTLVLSNLSYSATEETLQEVFEKATFIKV 516

Query:   223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPKSTPDHSAAAS 280
             PQN + +++G++F+ +   A  + +++ + + N + ++G    +    P+ +P+  A + 
Sbjct:   517 PQNQNGKSKGYAFIEF---ASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPN--ARSQ 571

Query:   281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAV 339
               K L+VK + ++T+ E +KE F   G V   ++   ++G  + FGF+ +     A KA 
Sbjct:   572 PSKTLFVKGLSEDTTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDA-KAA 628

Query:   340 KDT-EKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGT 398
             K+  E  EIDG  + +  AKP+ +    G      G         G GGF G   G    
Sbjct:   629 KEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGRGGGRGGRGGFGGRGRG---- 684

Query:   399 GFGVAAGFQQPMIYGRGPMPSG 420
             GFG   GF+     G    P G
Sbjct:   685 GFGGRGGFRGGRGGGGDHKPQG 706

 Score = 163 (62.4 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
 Identities = 45/166 (27%), Positives = 89/166 (53%)

Query:   111 IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170
             +  L   A+EE L+++ E     F +++ ++ ++G+SKG+AF+ F S E AK+A++  + 
Sbjct:   492 LSNLSYSATEETLQEVFEKA--TF-IKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNK 547

Query:   171 KELKGKTIRCSLSETKNRLFIGNVP------KNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
             +E++G+ IR  L   +      + P      K  +ED   + +++   G     ++ D +
Sbjct:   548 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRE 607

Query:   225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
               S ++GF FV + +   A  +++ M +   ++DGN  T+ WA PK
Sbjct:   608 TGS-SKGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPK 650

 Score = 130 (50.8 bits), Expect = 4.3e-05, P = 4.3e-05
 Identities = 70/300 (23%), Positives = 124/300 (41%)

Query:    57 AGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPP-NGSEVFIGGLP 115
             A   E D+  E + ++DD    + EE+   +     K K A+++ +   N +E       
Sbjct:   183 ASEDEDDEDDEDDEDEDDDEEDDSEEEAMETTPAKGK-KAAKVVPVKAKNVAEDEDEEED 241

Query:   116 KDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK-KAIDELHSKELK 174
              +  ++D  D  +   D  E    +++E  E         R KE AK KA  E   ++++
Sbjct:   242 DEDEDDDDDDDDDDEDDEDEDDEEEEEEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVE 301

Query:   175 GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
             G         T   LF+GN+  N +  E +  I DV       +L          R F +
Sbjct:   302 GTE-----PTTAFNLFVGNLNFNKSAPELKTGISDV---FAKNDLAVVDVRIGMTRKFGY 353

Query:   235 VLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNT 294
             V +   +  D  +   L    K+ GN   I    PK     S      + L  KN+P   
Sbjct:   354 VDF--ESAEDLEKALELTG-LKVFGNE--IKLEKPKGKD--SKKERDARTLLAKNLPYKV 406

Query:   295 STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354
             + +++KE+F+   E+ ++V   GKS  +   +I +   + A K  ++ +  EIDG+ + +
Sbjct:   407 TQDELKEVFEDAAEI-RLVSKDGKS--KGIAYIEFKTEADAEKTFEEKQGTEIDGRSISL 463

 Score = 127 (49.8 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query:   109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
             +F+ GL +D +EE L++  +  G V   R++ D+E+G SKGF FV F S+E AK A + +
Sbjct:   576 LFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 632

Query:   169 HSKELKGKTIRCSLSETK 186
                E+ G  +    ++ K
Sbjct:   633 EDGEIDGNKVTLDWAKPK 650

 Score = 44 (20.5 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
 Identities = 9/44 (20%), Positives = 22/44 (50%)

Query:    55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQ 98
             +K  A ++D+  +    DDD    +++E       E+E+++  +
Sbjct:   229 AKNVAEDEDEEEDDEDEDDDDDDDDDDEDDEDEDDEEEEEEEEE 272

 Score = 38 (18.4 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query:    55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKD 94
             +KAG ++ D    A       P   EE+     + EDE+D
Sbjct:     5 AKAGKNQGDPKKMA-----PPPKEVEEDSEDEEMSEDEED 39


>UNIPROTKB|H3BNY3 [details] [associations]
            symbol:PABPC3 "Polyadenylate-binding protein 3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
            HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
            Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
        Length = 347

 Score = 233 (87.1 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 67/270 (24%), Positives = 131/270 (48%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P  S +++G L  D +E  L +   P G +  +R+ +D  +  S  +A+V+F+  + A+ 
Sbjct:     9 PTAS-LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67

Query:   164 AIDELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
             A+D ++   +KGK +R   S+    L    +GN+  KN  +    K + D       I  
Sbjct:    68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127

Query:   220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS--A 277
                  + + ++G+ FV +  +  A+ + +KM N    L+G    +     +   +    A
Sbjct:   128 CNVVCDENGSKGYGFVHFETHEAAERAIKKM-NGML-LNGRKVFVGQFKSRKEREAELGA 185

Query:   278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSAL 336
              A +   +Y+KN  ++   E++K+LF + G    V +   +SGK + FGF+ +     A 
Sbjct:   186 RAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 245

Query:   337 KAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
             KAV +    E++G+ + V  A+ + +++TE
Sbjct:   246 KAVDEMNGKELNGKQIYVGRAQKKVERQTE 275

 Score = 172 (65.6 bits), Expect = 2.4e-10, P = 2.4e-10
 Identities = 39/97 (40%), Positives = 56/97 (57%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  K++ A+L A       V+I    +D  +E L+DL    G    V++M D ESG+SKG
Sbjct:   174 KSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
             F FVSF   E A+KA+DE++ KEL GK I    ++ K
Sbjct:   233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269


>UNIPROTKB|E2RQC8 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
            ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
            NextBio:20898275 Uniprot:E2RQC8
        Length = 596

 Score = 241 (89.9 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 67/266 (25%), Positives = 129/266 (48%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  D +E  L +   P G +  +R+ +D  +  S G+A+V+F+    A++A+D
Sbjct:    11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++   +KGK +R   S+    L    +GN+  KN  +    K + D       I   K 
Sbjct:    71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               + + ++G+ FV +     A+ + +KM N     D       +   K    +  A A +
Sbjct:   131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
                +Y+KN  ++   E++K+LF + G    V +   +SGK + FGF+ +     A KAV 
Sbjct:   190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
             +    E++G+ + V  A+ + +++TE
Sbjct:   250 EMNGKELNGKQIYVGRAQKKVERQTE 275

 Score = 174 (66.3 bits), Expect = 4.6e-10, P = 4.6e-10
 Identities = 39/97 (40%), Positives = 57/97 (58%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  K++ A+L A     + V+I    +D  +E L+DL    G    V++M D ESG+SKG
Sbjct:   174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
             F FVSF   E A+KA+DE++ KEL GK I    ++ K
Sbjct:   233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269


>UNIPROTKB|P61286 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9913 "Bos taurus" [GO:0005515 "protein binding"
            evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
            evidence=ISS] [GO:2000623 "negative regulation of
            nuclear-transcribed mRNA catabolic process, nonsense-mediated
            decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
            evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
            [GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
            "RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
            process, nonsense-mediated decay" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
            GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
            UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
            Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
            GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
            BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
        Length = 636

 Score = 241 (89.9 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 67/266 (25%), Positives = 129/266 (48%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  D +E  L +   P G +  +R+ +D  +  S G+A+V+F+    A++A+D
Sbjct:    11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++   +KGK +R   S+    L    +GN+  KN  +    K + D       I   K 
Sbjct:    71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               + + ++G+ FV +     A+ + +KM N     D       +   K    +  A A +
Sbjct:   131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
                +Y+KN  ++   E++K+LF + G    V +   +SGK + FGF+ +     A KAV 
Sbjct:   190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
             +    E++G+ + V  A+ + +++TE
Sbjct:   250 EMNGKELNGKQIYVGRAQKKVERQTE 275

 Score = 174 (66.3 bits), Expect = 5.1e-10, P = 5.1e-10
 Identities = 39/97 (40%), Positives = 57/97 (58%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  K++ A+L A     + V+I    +D  +E L+DL    G    V++M D ESG+SKG
Sbjct:   174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
             F FVSF   E A+KA+DE++ KEL GK I    ++ K
Sbjct:   233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269

 Score = 120 (47.3 bits), Expect = 0.00047, P = 0.00047
 Identities = 51/224 (22%), Positives = 100/224 (44%)

Query:   162 KKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             K  +    S++ +   +     E  N ++I N  ++  ++  + +    GP + +++++ 
Sbjct:   167 KVFVGRFKSRKEREAELGARAKEFTN-VYIKNFGEDMDDERLKDLFGKFGPAL-SVKVMT 224

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--STPDHSAAA 279
             D    S+  GF FV +  +  A  +  +M N   +L+G    +  A  K     +     
Sbjct:   225 DESGKSK--GFGFVSFERHEDAQKAVDEM-NGK-ELNGKQIYVGRAQKKVERQTELKRKF 280

Query:   280 SQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFI 327
              Q+K           LYVKN+ D    E++++ F   G +T  KV+M  G+S  + FGF+
Sbjct:   281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS--KGFGFV 338

Query:   328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
              ++    A KAV +     +  + L V LA+ + +++   T  Y
Sbjct:   339 CFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382


>UNIPROTKB|J9P326 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
            OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
            ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
            KEGG:cfa:612751 Uniprot:J9P326
        Length = 636

 Score = 241 (89.9 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 67/266 (25%), Positives = 129/266 (48%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  D +E  L +   P G +  +R+ +D  +  S G+A+V+F+    A++A+D
Sbjct:    11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++   +KGK +R   S+    L    +GN+  KN  +    K + D       I   K 
Sbjct:    71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               + + ++G+ FV +     A+ + +KM N     D       +   K    +  A A +
Sbjct:   131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
                +Y+KN  ++   E++K+LF + G    V +   +SGK + FGF+ +     A KAV 
Sbjct:   190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
             +    E++G+ + V  A+ + +++TE
Sbjct:   250 EMNGKELNGKQIYVGRAQKKVERQTE 275

 Score = 174 (66.3 bits), Expect = 5.1e-10, P = 5.1e-10
 Identities = 39/97 (40%), Positives = 57/97 (58%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  K++ A+L A     + V+I    +D  +E L+DL    G    V++M D ESG+SKG
Sbjct:   174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
             F FVSF   E A+KA+DE++ KEL GK I    ++ K
Sbjct:   233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269

 Score = 120 (47.3 bits), Expect = 0.00047, P = 0.00047
 Identities = 51/224 (22%), Positives = 100/224 (44%)

Query:   162 KKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             K  +    S++ +   +     E  N ++I N  ++  ++  + +    GP + +++++ 
Sbjct:   167 KVFVGRFKSRKEREAELGARAKEFTN-VYIKNFGEDMDDERLKDLFGKFGPAL-SVKVMT 224

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--STPDHSAAA 279
             D    S+  GF FV +  +  A  +  +M N   +L+G    +  A  K     +     
Sbjct:   225 DESGKSK--GFGFVSFERHEDAQKAVDEM-NGK-ELNGKQIYVGRAQKKVERQTELKRKF 280

Query:   280 SQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFI 327
              Q+K           LYVKN+ D    E++++ F   G +T  KV+M  G+S  + FGF+
Sbjct:   281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS--KGFGFV 338

Query:   328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
              ++    A KAV +     +  + L V LA+ + +++   T  Y
Sbjct:   339 CFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382


>UNIPROTKB|P11940 [details] [associations]
            symbol:PABPC1 "Polyadenylate-binding protein 1"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
            [GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
            "cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
            evidence=TAS] [GO:0008494 "translation activator activity"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
            "ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
            regulation of nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
            stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0000184 "nuclear-transcribed mRNA catabolic process,
            nonsense-mediated decay" evidence=TAS] [GO:0000288
            "nuclear-transcribed mRNA catabolic process,
            deadenylation-dependent decay" evidence=TAS] [GO:0000289
            "nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
            [GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
            evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
            [GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
            metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
            process" evidence=TAS] [GO:0044267 "cellular protein metabolic
            process" evidence=TAS] [GO:0045727 "positive regulation of
            translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
            Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
            Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
            GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
            eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
            Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
            PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
            PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
            CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
            EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
            EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
            EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
            IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
            RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
            PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
            PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
            PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
            PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
            SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
            STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
            PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
            KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
            HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
            PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
            BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
            EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
            PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
            Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
        Length = 636

 Score = 241 (89.9 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 67/266 (25%), Positives = 129/266 (48%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  D +E  L +   P G +  +R+ +D  +  S G+A+V+F+    A++A+D
Sbjct:    11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++   +KGK +R   S+    L    +GN+  KN  +    K + D       I   K 
Sbjct:    71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               + + ++G+ FV +     A+ + +KM N     D       +   K    +  A A +
Sbjct:   131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
                +Y+KN  ++   E++K+LF + G    V +   +SGK + FGF+ +     A KAV 
Sbjct:   190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
             +    E++G+ + V  A+ + +++TE
Sbjct:   250 EMNGKELNGKQIYVGRAQKKVERQTE 275

 Score = 174 (66.3 bits), Expect = 5.1e-10, P = 5.1e-10
 Identities = 39/97 (40%), Positives = 57/97 (58%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  K++ A+L A     + V+I    +D  +E L+DL    G    V++M D ESG+SKG
Sbjct:   174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
             F FVSF   E A+KA+DE++ KEL GK I    ++ K
Sbjct:   233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269

 Score = 120 (47.3 bits), Expect = 0.00047, P = 0.00047
 Identities = 51/224 (22%), Positives = 100/224 (44%)

Query:   162 KKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             K  +    S++ +   +     E  N ++I N  ++  ++  + +    GP + +++++ 
Sbjct:   167 KVFVGRFKSRKEREAELGARAKEFTN-VYIKNFGEDMDDERLKDLFGKFGPAL-SVKVMT 224

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--STPDHSAAA 279
             D    S+  GF FV +  +  A  +  +M N   +L+G    +  A  K     +     
Sbjct:   225 DESGKSK--GFGFVSFERHEDAQKAVDEM-NGK-ELNGKQIYVGRAQKKVERQTELKRKF 280

Query:   280 SQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFI 327
              Q+K           LYVKN+ D    E++++ F   G +T  KV+M  G+S  + FGF+
Sbjct:   281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS--KGFGFV 338

Query:   328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
              ++    A KAV +     +  + L V LA+ + +++   T  Y
Sbjct:   339 CFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382


>UNIPROTKB|F2Z557 [details] [associations]
            symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
            EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
            ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
            Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
            Uniprot:F2Z557
        Length = 636

 Score = 241 (89.9 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 67/266 (25%), Positives = 129/266 (48%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  D +E  L +   P G +  +R+ +D  +  S G+A+V+F+    A++A+D
Sbjct:    11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++   +KGK +R   S+    L    +GN+  KN  +    K + D       I   K 
Sbjct:    71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               + + ++G+ FV +     A+ + +KM N     D       +   K    +  A A +
Sbjct:   131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
                +Y+KN  ++   E++K+LF + G    V +   +SGK + FGF+ +     A KAV 
Sbjct:   190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
             +    E++G+ + V  A+ + +++TE
Sbjct:   250 EMNGKELNGKQIYVGRAQKKVERQTE 275

 Score = 174 (66.3 bits), Expect = 5.1e-10, P = 5.1e-10
 Identities = 39/97 (40%), Positives = 57/97 (58%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  K++ A+L A     + V+I    +D  +E L+DL    G    V++M D ESG+SKG
Sbjct:   174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
             F FVSF   E A+KA+DE++ KEL GK I    ++ K
Sbjct:   233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269

 Score = 120 (47.3 bits), Expect = 0.00047, P = 0.00047
 Identities = 51/224 (22%), Positives = 100/224 (44%)

Query:   162 KKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             K  +    S++ +   +     E  N ++I N  ++  ++  + +    GP + +++++ 
Sbjct:   167 KVFVGRFKSRKEREAELGARAKEFTN-VYIKNFGEDMDDERLKDLFGKFGPAL-SVKVMT 224

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--STPDHSAAA 279
             D    S+  GF FV +  +  A  +  +M N   +L+G    +  A  K     +     
Sbjct:   225 DESGKSK--GFGFVSFERHEDAQKAVDEM-NGK-ELNGKQIYVGRAQKKVERQTELKRKF 280

Query:   280 SQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFI 327
              Q+K           LYVKN+ D    E++++ F   G +T  KV+M  G+S  + FGF+
Sbjct:   281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS--KGFGFV 338

Query:   328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
              ++    A KAV +     +  + L V LA+ + +++   T  Y
Sbjct:   339 CFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382


>POMBASE|SPAC57A7.04c [details] [associations]
            symbol:pabp "mRNA export shuttling protein"
            species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
            translational initiation" evidence=NAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
            "cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
            evidence=IMP] [GO:0006446 "regulation of translational initiation"
            evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
            GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
            GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
            RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
            IntAct:P31209 STRING:P31209 PRIDE:P31209
            EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
            OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
        Length = 653

 Score = 241 (89.9 bits), Expect = 1.4e-17, P = 1.4e-17
 Identities = 84/325 (25%), Positives = 155/325 (47%)

Query:    59 ASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDK---HAQLLALP----PNGSEVFI 111
             +S K++S+  N    +T   ++ E+P A+    E      +A  +A P    P  + +++
Sbjct:    27 SSTKEESS--NTPSTETQPEKKAEEPEAAAEPSESTSTPTNASSVATPSGTAPTSASLYV 84

Query:   112 GGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK 171
             G L    +E  L +L   IG V  +R+ +D  +  S G+A+V+F + E  +KA+DEL+  
Sbjct:    85 GELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYT 144

Query:   172 ELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS 227
              +KG+  R   S+   +  ++  GNV  KN       K + D       I   K   +  
Sbjct:   145 LIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDEL 204

Query:   228 RN-RGFSFVLYYN----NACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV 282
              N +G+ FV + +    NA  ++    +LN      G+   +S  + +S  +  A  +  
Sbjct:   205 GNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHH--VSRRERQSKVE--ALKANF 260

Query:   283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKD 341
               +Y+KN+    + ++  +LF + GE+T + +   ++ K R FGF++YA    A KAV +
Sbjct:   261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDE 320

Query:   342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
                 E  G+ L V  A+ + +++ E
Sbjct:   321 LNDKEYKGKKLYVGRAQKKHEREEE 345

 Score = 179 (68.1 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 69/267 (25%), Positives = 112/267 (41%)

Query:   181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNN 240
             +L      ++I N+    TE EF  +    G  + ++ L+KD QN  + RGF FV Y N+
Sbjct:   255 ALKANFTNVYIKNLDTEITEQEFSDLFGQFGE-ITSLSLVKD-QN-DKPRGFGFVNYANH 311

Query:   241 ACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA--SQVKA----------LYVK 288
              CA  +  ++ +  +K  G    +  A  K   +        Q+K           L++K
Sbjct:   312 ECAQKAVDELNDKEYK--GKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIK 369

Query:   289 NIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEI 347
             N+ D    E++K  F   G +T   +   + GK + FGF+ Y     A KAV +  +  +
Sbjct:   370 NLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRML 429

Query:   348 DGQVLEVVLAKPQTDKKTEGTFPYSP-GLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGF 406
              G+ L V LA+ +  ++++                 A   G     YG+ G       G+
Sbjct:   430 AGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQQVAAAAGIPAVQYGATGPLIYGPGGY 489

Query:   407 QQPM-IYGRG-PMPSGMHMVPMVLPDG 431
               P  + GRG PM  G H  PM +  G
Sbjct:   490 PIPAAVNGRGMPMVPG-HNGPMPMYPG 515

 Score = 124 (48.7 bits), Expect = 0.00018, P = 0.00018
 Identities = 27/81 (33%), Positives = 45/81 (55%)

Query:   106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
             G  +FI  L  +  +E L+      G +   ++M D E G+SKGF FV + + E A KA+
Sbjct:   363 GVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAV 421

Query:   166 DELHSKELKGKTIRCSLSETK 186
              E++ + L GK +  +L++ K
Sbjct:   422 TEMNQRMLAGKPLYVALAQRK 442


>ZFIN|ZDB-GENE-050308-1 [details] [associations]
            symbol:pabpc1b "poly A binding protein, cytoplasmic 1
            b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
            GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
            EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
            UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
            Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
            InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
        Length = 634

 Score = 240 (89.5 bits), Expect = 1.7e-17, P = 1.7e-17
 Identities = 63/266 (23%), Positives = 132/266 (49%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L +D +E  L +   P G +  +R+ +D  +  S G+A+V+F+    A++A+D
Sbjct:    11 ASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++   +KG+ +R   S+    L    +GN+  KN  +    K + D       I   K 
Sbjct:    71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               + + ++G+ FV +     A+ + +KM N     D       +   K    +  A A +
Sbjct:   131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
                +Y+KN  ++   +K+K++F ++G    + +   ++GK R FGF+ +     A +AV 
Sbjct:   190 FTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVD 249

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
             +    E++G+++ V  A+ + +++TE
Sbjct:   250 EMNGKEMNGKLIYVGRAQKKVERQTE 275

 Score = 164 (62.8 bits), Expect = 6.5e-09, P = 6.5e-09
 Identities = 33/97 (34%), Positives = 58/97 (59%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  K++ A+L A     + V+I    +D  ++ L+D+    G+   +R+M D E+G+S+G
Sbjct:   174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTD-ENGKSRG 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
             F FVSF   E A++A+DE++ KE+ GK I    ++ K
Sbjct:   233 FGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKK 269

 Score = 123 (48.4 bits), Expect = 0.00022, P = 0.00022
 Identities = 52/224 (23%), Positives = 102/224 (45%)

Query:   162 KKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             K  +    S++ +   +     E  N ++I N  ++  +D+ + +    G  + +I ++ 
Sbjct:   167 KVFVGRFKSRKEREAELGARAKEFTN-VYIKNFGEDMDDDKLKDIFSKYGNAM-SIRVMT 224

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--STPDHSAAA 279
             D +N  ++RGF FV +  +  A  +  +M N   +++G    +  A  K     +     
Sbjct:   225 D-EN-GKSRGFGFVSFERHEDAQRAVDEM-NGK-EMNGKLIYVGRAQKKVERQTELKRKF 280

Query:   280 SQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFI 327
              Q+K           LYVKN+ D    E++++ F   G +T  KV+M  G+S  + FGF+
Sbjct:   281 EQMKQDRMTRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDGGRS--KGFGFV 338

Query:   328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
              ++    A KAV +     +  + L V LA+ + +++   T  Y
Sbjct:   339 CFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382


>UNIPROTKB|A4QUF0 [details] [associations]
            symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
            nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
            "cellular_component" evidence=ND] [GO:0043581 "mycelium
            development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
            EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
            SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
            KEGG:mgr:MGG_09505 Uniprot:A4QUF0
        Length = 762

 Score = 227 (85.0 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
 Identities = 75/275 (27%), Positives = 133/275 (48%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P   + +++G L    +E  L +L   IG V  +R+ +D  +  S G+A+V++ +    +
Sbjct:    57 PQASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGE 116

Query:   163 KAIDELHSKELKGKTIRCSLSETKNRLFI---GNV-PKNWTEDEFRKVIEDVGPGVETIE 218
             KA++EL+   +KG+  R   S+    L     GNV  KN       K + D       I 
Sbjct:   117 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 176

Query:   219 LIKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
               K  Q+ + N +G+ FV Y  +  A  +  K +N    L+     +    PK   D  +
Sbjct:   177 SCKVAQDENGNSKGYGFVHYETDEAASQAI-KHVNGML-LNEKKVYVGHHIPKK--DRQS 232

Query:   278 AASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGK-RDFGFIHYAE 331
                ++KA    +YVKNI    + ++ + LF+++G+VT   +   + +GK R FGF+++  
Sbjct:   233 KFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTS 292

Query:   332 RSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
                A KAV++  + E  GQ L V  A+ + +++ E
Sbjct:   293 HEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEE 327

 Score = 161 (61.7 bits), Expect = 7.0e-12, Sum P(3) = 7.0e-12
 Identities = 30/96 (31%), Positives = 58/96 (60%)

Query:    92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
             +KD+ ++   +  N + +++  +  + ++++ R L E  GDV    L +D+E+G+S+GF 
Sbjct:   227 KKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFG 286

Query:   152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
             FV+F S E A KA+ EL+ KE  G+ +    ++ K+
Sbjct:   287 FVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKH 322

 Score = 136 (52.9 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
 Identities = 58/204 (28%), Positives = 88/204 (43%)

Query:   189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
             +++ N+    T+DEFR + E  G  V +  L +D Q   ++RGF FV + ++  A  + Q
Sbjct:   244 IYVKNINPEVTDDEFRTLFEKYGD-VTSSSLARD-QETGKSRGFGFVNFTSHEDASKAVQ 301

Query:   249 KMLNANFKLDGNTPTISWADPKSTPDHSA-----AASQVKA-------LYVKNIPDNTST 296
             ++    F   G    +  A  K   +        AA Q KA       LY+KN+ D    
Sbjct:   302 ELNEKEFH--GQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDD 359

Query:   297 EKIKELFQRHGEVT--KV----VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ 350
             EK+++LF   G +T  KV    +  PG+ G+   G     E S   K  K  EK   D +
Sbjct:   360 EKLRQLFSEFGPITSAKVMRDSITEPGEEGESKEG-----EESEKNKENKPEEKEGDDSK 414

Query:   351 VLEVVLAKPQTDKKTEGTFPYSPG 374
               E    K   D K++     S G
Sbjct:   415 PEE----KEGEDSKSKSKLGKSKG 434

 Score = 80 (33.2 bits), Expect = 7.0e-12, Sum P(3) = 7.0e-12
 Identities = 42/144 (29%), Positives = 60/144 (41%)

Query:   288 KNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI 347
             +N P+    +  K   ++ GE +K     GKS  + FGF+ +A    A KAV +  +  +
Sbjct:   402 ENKPEEKEGDDSKPE-EKEGEDSKSKSKLGKS--KGFGFVCFANPDDATKAVAEMNQRMV 458

Query:   348 DGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTP--Y--GSVGTGFGVA 403
             + + L V LA+ +  +K +             L        AG P  Y    V  G G  
Sbjct:   459 NNKPLYVALAQRKDVRKNQLEQSIQ---ARNQLRMQQAAAAAGMPQQYMQAPVFYGPGSQ 515

Query:   404 AGFQQPMIYGRG-PMPSG-MHMVP 425
              GF  P   GRG P P G M M P
Sbjct:   516 PGFMPPA-GGRGMPYPQGGMPMQP 538

 Score = 58 (25.5 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
 Identities = 26/67 (38%), Positives = 29/67 (43%)

Query:   371 YSPGLVPTHLPHAGYGGFAGTPYGSV----GTGFGVAAGFQQPMIYGRGPMPSGMHMVPM 426
             Y PG  P  +P AG  G    P G +    G      AGF      GRG MP G+   PM
Sbjct:   510 YGPGSQPGFMPPAGGRGMP-YPQGGMPMQPGRPGQFPAGFAAQQ-GGRGAMPQGIP--PM 565

Query:   427 V-LPDGQ 432
               LP GQ
Sbjct:   566 YGLP-GQ 571

 Score = 41 (19.5 bits), Expect = 4.6e-10, Sum P(3) = 4.6e-10
 Identities = 16/67 (23%), Positives = 27/67 (40%)

Query:   196 KNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANF 255
             KN       K  +D  P  +  E  K      +++GF FV + N    D + + +   N 
Sbjct:   399 KNKENKPEEKEGDDSKPEEKEGEDSKSKSKLGKSKGFGFVCFAN---PDDATKAVAEMNQ 455

Query:   256 KLDGNTP 262
             ++  N P
Sbjct:   456 RMVNNKP 462

 Score = 37 (18.1 bits), Expect = 2.8e-15, Sum P(2) = 2.8e-15
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query:   413 GRGPMPSGMHMVPMVLPDG 431
             GRGPM  G+  VP  +P G
Sbjct:   607 GRGPMQGGVP-VPG-MPGG 623


>UNIPROTKB|Q7ZYE9 [details] [associations]
            symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
            laevis" [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
            Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
            UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
            GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
            Uniprot:Q7ZYE9
        Length = 324

 Score = 211 (79.3 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
 Identities = 62/224 (27%), Positives = 109/224 (48%)

Query:    56 KAGASEKDQSAEANRNDDDTPHVE---EEEKPTASVGEDEKDKHAQLLALPPNGSEVFIG 112
             +  A    ++ +A   +D  P  +   E E+  AS GE++    A + +    G ++F+G
Sbjct:    10 ETNAENGHEACDAEAAEDKAPAGQNGAEGEQINASKGEEDAGCVADISSPLTEGVKMFVG 69

Query:   113 GLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172
             GL  D S++DL+D     G+V +  +  D  +G S+GF F+ F+  E   K ++    + 
Sbjct:    70 GLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEHKEHR- 128

Query:   173 LKGKTI--RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS 227
             L G+ I  + +++  K+   ++F+G +     ED+ R+  E  G  +E IEL  DP+   
Sbjct:   129 LDGRLIDPKKAMAMKKDPIKKIFVGGLNPEAGEDQIREYFETFGE-IEAIELPMDPKTNK 187

Query:   228 RNRGFSFVLYYNNACADYSRQKMLNANF-KLDGNTPTISWADPK 270
             R RGF F+ +          +K+L   F  + G+   I  A PK
Sbjct:   188 R-RGFVFITFKEEDPV----KKILEKKFHNVSGSKCEIKIAQPK 226

 Score = 138 (53.6 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
 Identities = 41/176 (23%), Positives = 83/176 (47%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
             ++F+G +  + ++ + +      G  V    +  DP N  R+RGF F+L+ +    D   
Sbjct:    65 KMFVGGLSWDTSKKDLKDYFAKFGE-VSDCTIKMDP-NTGRSRGFGFILFKDAESVD--- 119

Query:   248 QKML-NANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH 306
              K+L +   +LDG        DPK     +     +K ++V  +      ++I+E F+  
Sbjct:   120 -KVLEHKEHRLDGRL-----IDPKKAM--AMKKDPIKKIFVGGLNPEAGEDQIREYFETF 171

Query:   307 GEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360
             GE+  + +P  P  + +R F FI + E    +K + + + + + G   E+ +A+P+
Sbjct:   172 GEIEAIELPMDPKTNKRRGFVFITFKEEDP-VKKILEKKFHNVSGSKCEIKIAQPK 226

 Score = 55 (24.4 bits), Expect = 1.9e-17, Sum P(2) = 1.9e-17
 Identities = 14/41 (34%), Positives = 18/41 (43%)

Query:   384 GYGGFAGTPYGSVGT-GFGVAAGFQQPMI-YGRGPMPSGMH 422
             GYGG+    Y   G  G+G    + Q    YG+ P   G H
Sbjct:   278 GYGGYGNYDYSGYGYYGYGPGYDYSQGSANYGKAPR-RGSH 317


>UNIPROTKB|D4AC14 [details] [associations]
            symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
            Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
        Length = 631

 Score = 239 (89.2 bits), Expect = 2.3e-17, P = 2.3e-17
 Identities = 70/266 (26%), Positives = 128/266 (48%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  D +E  L +   P G V  +R+ +D  +  S G+A+V+F+    A++A+D
Sbjct:    11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++   +KGK IR   S+    L    +GNV  KN  +    K + D       I   K 
Sbjct:    71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               + + ++G++FV +     A+ + +KM N     D       +   K    +  A A +
Sbjct:   131 VCDENGSKGYAFVHFETQEAANKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
                +Y+KN  +    E ++ELF + G+   V +    SGK + FGF+ Y +   A KAV+
Sbjct:   190 FTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVE 249

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
             +    E+ G+ + V  A+ + +++ E
Sbjct:   250 EMNGKEMSGKSIFVGRAQKKVERQAE 275

 Score = 162 (62.1 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 34/97 (35%), Positives = 58/97 (59%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  K++ A+L A     + V+I    ++  +E+LR+L    G    V++M+D  SG+SKG
Sbjct:   174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKG 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
             F FVS+   E A KA++E++ KE+ GK+I    ++ K
Sbjct:   233 FGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKK 269

 Score = 131 (51.2 bits), Expect = 2.9e-05, P = 2.9e-05
 Identities = 51/224 (22%), Positives = 102/224 (45%)

Query:   162 KKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             K  +    S++ +   +     E  N ++I N  +   ++  R++    G  + ++++++
Sbjct:   167 KVFVGRFKSRKEREAELGAKAKEFTN-VYIKNFGEEVDDENLRELFSQFGKTL-SVKVMR 224

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--STPDHSAAA 279
             D    S+  GF FV Y  +  A+ + ++M N   ++ G +  +  A  K     +     
Sbjct:   225 DCSGKSK--GFGFVSYEKHEDANKAVEEM-NGK-EMSGKSIFVGRAQKKVERQAELKRKF 280

Query:   280 SQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFI 327
              Q+K           LY+KN+ D    EK+++ F   G +T  KV++  G+S  + FGF+
Sbjct:   281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS--KGFGFV 338

Query:   328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
              ++    A KAV +     +  + L V LA+ + ++K   T  Y
Sbjct:   339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382


>UNIPROTKB|E1BWJ7 [details] [associations]
            symbol:PABPC1L "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
            EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
            RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
            Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
            OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
        Length = 632

 Score = 239 (89.2 bits), Expect = 2.3e-17, P = 2.3e-17
 Identities = 67/266 (25%), Positives = 129/266 (48%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  D +E  L +   P G +  +R+ +D  S  S G+A+++F+    A++A+D
Sbjct:    11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALD 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++ + +KG+ +R   S+    L    +GNV  KN  +    K + D       I   K 
Sbjct:    71 TMNFEVIKGRPVRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGNILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               + + +RG  FV +     A  + Q M N     D       +   K    +  A A +
Sbjct:   131 VCDENGSRGHGFVHFETQEAATRAIQTM-NGMLLNDRKVFVGHFKSRKEREAEFGARAME 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
                +Y+KN  D+    +++E+F R G+   V +    +G+ + FGF+++ +   A KAV 
Sbjct:   190 FTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVA 249

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
             D    EI+G+++ V  A+ + ++++E
Sbjct:   250 DMNGKEINGRMVYVGRAQKRLERQSE 275

 Score = 130 (50.8 bits), Expect = 3.7e-05, P = 3.7e-05
 Identities = 27/89 (30%), Positives = 48/89 (53%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  K++ A+  A     + V+I     D  +  LR++    G    V++M D  +G SKG
Sbjct:   174 KSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMD-HTGRSKG 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
             F FV+F   E A+KA+ +++ KE+ G+ +
Sbjct:   233 FGFVNFEKHEEAQKAVADMNGKEINGRMV 261

 Score = 118 (46.6 bits), Expect = 0.00077, P = 0.00077
 Identities = 53/217 (24%), Positives = 92/217 (42%)

Query:   189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNN-----ACA 243
             ++I N   +  ++  R++    G  + +++++ D  +  R++GF FV +  +     A A
Sbjct:   193 VYIKNFGDDMDDNRLREIFSRFGKTL-SVKVMMD--HTGRSKGFGFVNFEKHEEAQKAVA 249

Query:   244 DYSRQKMLNANFKLDGNTPTI----SWADPKSTPDHSAAASQVKA--LYVKNIPDNTSTE 297
             D +  K +N      G         S    K         S+ +   LYVKN+ D    E
Sbjct:   250 DMNG-KEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDE 308

Query:   298 KIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356
             ++++ F  +G +T   VM  G   K  FGF+ ++    A KAV +     +  + L V L
Sbjct:   309 RLRKEFSPYGTITSAKVMTEGGHSK-GFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVAL 367

Query:   357 AKPQTDKKTEGTFPYSPGLVPTH-LPHAGYGGFAGTP 392
             A+ + ++K   T  Y   L     LP    G F   P
Sbjct:   368 AQRKEERKAILTNQYMQRLATMRALPGPFLGSFQPPP 404


>UNIPROTKB|G3V9N0 [details] [associations]
            symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
            OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
        Length = 660

 Score = 239 (89.2 bits), Expect = 2.5e-17, P = 2.5e-17
 Identities = 70/266 (26%), Positives = 128/266 (48%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  D +E  L +   P G V  +R+ +D  +  S G+A+V+F+    A++A+D
Sbjct:    11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++   +KGK IR   S+    L    +GNV  KN  +    K + D       I   K 
Sbjct:    71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               + + ++G++FV +     A+ + +KM N     D       +   K    +  A A +
Sbjct:   131 VCDENGSKGYAFVHFETQEAANKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
                +Y+KN  +    E ++ELF + G+   V +    SGK + FGF+ Y +   A KAV+
Sbjct:   190 FTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVE 249

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
             +    E+ G+ + V  A+ + +++ E
Sbjct:   250 EMNGKEMSGKSIFVGRAQKKVERQAE 275

 Score = 162 (62.1 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 34/97 (35%), Positives = 58/97 (59%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  K++ A+L A     + V+I    ++  +E+LR+L    G    V++M+D  SG+SKG
Sbjct:   174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDC-SGKSKG 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
             F FVS+   E A KA++E++ KE+ GK+I    ++ K
Sbjct:   233 FGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKK 269

 Score = 131 (51.2 bits), Expect = 3.0e-05, P = 3.0e-05
 Identities = 51/224 (22%), Positives = 102/224 (45%)

Query:   162 KKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             K  +    S++ +   +     E  N ++I N  +   ++  R++    G  + ++++++
Sbjct:   167 KVFVGRFKSRKEREAELGAKAKEFTN-VYIKNFGEEVDDENLRELFSQFGKTL-SVKVMR 224

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--STPDHSAAA 279
             D    S+  GF FV Y  +  A+ + ++M N   ++ G +  +  A  K     +     
Sbjct:   225 DCSGKSK--GFGFVSYEKHEDANKAVEEM-NGK-EMSGKSIFVGRAQKKVERQAELKRKF 280

Query:   280 SQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFI 327
              Q+K           LY+KN+ D    EK+++ F   G +T  KV++  G+S  + FGF+
Sbjct:   281 EQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS--KGFGFV 338

Query:   328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
              ++    A KAV +     +  + L V LA+ + ++K   T  Y
Sbjct:   339 CFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382


>UNIPROTKB|P08199 [details] [associations]
            symbol:NCL "Nucleolin" species:10036 "Mesocricetus auratus"
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0030529
            "ribonucleoprotein complex" evidence=ISS] [GO:0042162 "telomeric
            DNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
            GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            GO:GO:0030529 GO:GO:0042162 HOVERGEN:HBG002295 EMBL:M15825
            PIR:A27441 PDB:1FJ7 PDB:1FJC PDB:1FJE PDB:1RKJ PDBsum:1FJ7
            PDBsum:1FJC PDBsum:1FJE PDBsum:1RKJ ProteinModelPortal:P08199
            SMR:P08199 PRIDE:P08199 EvolutionaryTrace:P08199 Uniprot:P08199
        Length = 714

 Score = 233 (87.1 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
 Identities = 96/354 (27%), Positives = 166/354 (46%)

Query:    82 EKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD 141
             EKP    G D K   A    L  N        L  + +E++L+++ E   D  E+RL+  
Sbjct:   380 EKPK---GRDSKKVRAARTLLAKN--------LSFNITEDELKEVFE---DALEIRLVS- 424

Query:   142 KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKN--WT 199
              + G+SKG A++ F+S+  A+K ++E    E+ G+++    +  K +       KN  W+
Sbjct:   425 -QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQ-ERTGKNSTWS 482

Query:   200 EDEFRKVIEDVGPGV--ETIE-------LIKDPQNPS-RNRGFSFVLYYNNACADYSRQK 249
              +    V+ ++      ET++        IK PQN   +++G++F+ +   A  + +++ 
Sbjct:   483 GESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQQGKSKGYAFIEF---ASFEDAKEA 539

Query:   250 MLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308
             + + N  +++G T  +    P+ +P+  A +   K L+VK + ++T+ E +KE F+  G 
Sbjct:   540 LNSCNKMEIEGRTIRLELQGPRGSPN--ARSQPSKTLFVKGLSEDTTEETLKESFE--GS 595

Query:   309 VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT-EKYEIDGQVLEVVLAKPQTDKKTE 366
             V   ++   ++G  + FGF+ +     A KA K+  E  EIDG  + +  AKP    K E
Sbjct:   596 VRARIVTDRETGSSKGFGFVDFNSEEDA-KAAKEAMEDGEIDGNKVTLDWAKP----KGE 650

Query:   367 GTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSG 420
             G F    G         G GGF G   G  G G G   G  +    GRG    G
Sbjct:   651 GGFGGRGG---------GRGGFGGRG-GGRGGGRGGFGGRGRGGFGGRGGFRGG 694

 Score = 202 (76.2 bits), Expect = 6.0e-13, Sum P(2) = 6.0e-13
 Identities = 79/326 (24%), Positives = 155/326 (47%)

Query:    61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPN---GSE------VFI 111
             E+D+  E +  +++    EE  KP     + E  K  ++         GSE      +FI
Sbjct:   253 EEDEEEEEDEEEEEEEEEEEPVKPAPGKRKKEMTKQKEVPEAKKQKVEGSESTTPFNLFI 312

Query:   112 GGLPKDASEEDLR-DLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170
             G L  + S  +L+  + EP     ++ ++ D  +G ++ F +V F S E  +KA+ EL  
Sbjct:   313 GNLNPNKSVAELKVAISEPFAKN-DLAVV-DVRTGTNRKFGYVDFESAEDLEKAL-ELTG 369

Query:   171 KELKGKTIRCSLSETKNR----------LFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
              ++ G  I+  L + K R          L   N+  N TEDE ++V ED    +E I L+
Sbjct:   370 LKVFGNEIK--LEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDA---LE-IRLV 423

Query:   221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS-----TPDH 275
                    +++G +++ + + A A+ + ++   A  ++DG + ++ +   K      T  +
Sbjct:   424 SQD---GKSKGIAYIEFKSEADAEKNLEEKQGA--EIDGRSVSLYYTGEKGQRQERTGKN 478

Query:   276 SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
             S  + + K L + N+  + + E ++E+F++    T + +P  + GK + + FI +A    
Sbjct:   479 STWSGESKTLVLSNLSYSATEETLQEVFEK---ATFIKVPQNQQGKSKGYAFIEFASFED 535

Query:   335 ALKAVKDTEKYEIDGQVLEVVLAKPQ 360
             A +A+    K EI+G+ + + L  P+
Sbjct:   536 AKEALNSCNKMEIEGRTIRLELQGPR 561

 Score = 168 (64.2 bits), Expect = 2.8e-09, P = 2.8e-09
 Identities = 56/223 (25%), Positives = 108/223 (48%)

Query:    60 SEKDQSAEANRNDDDTPHVEEEEKPTASVGE--DEKDKHAQLLALPPNGSEVFIGGLPKD 117
             SE D  AE N  +     ++         GE    +++  +          + +  L   
Sbjct:   439 SEAD--AEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESKTLVLSNLSYS 496

Query:   118 ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177
             A+EE L+++ E     F +++ ++++ G+SKG+AF+ F S E AK+A++  +  E++G+T
Sbjct:   497 ATEETLQEVFEKA--TF-IKVPQNQQ-GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRT 552

Query:   178 IRCSL----------SETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS 227
             IR  L          S+    LF+  + ++ TE+  ++  E    G     ++ D +  S
Sbjct:   553 IRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFE----GSVRARIVTDRETGS 608

Query:   228 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
              ++GF FV + +   A  +++ M +   ++DGN  T+ WA PK
Sbjct:   609 -SKGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPK 648

 Score = 156 (60.0 bits), Expect = 9.7e-08, Sum P(2) = 9.7e-08
 Identities = 76/312 (24%), Positives = 138/312 (44%)

Query:    65 SAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLP---KDASEE 121
             +A A+ ++D+    EEEE+      ED+ ++   +   P  G +     +P   K+ +EE
Sbjct:   184 AAPASEDEDEEEDEEEEEEDEEE--EDDSEEEEAMEITPAKGKKAPAKVVPVKAKNVAEE 241

Query:   122 DLRDLCEPIGDVFEVRLMKDKESGESKGFA-----FVSFRSKEFAK-KAIDELHSKELKG 175
             D  D  E   +  +    +D+E  E +            R KE  K K + E   ++++G
Sbjct:   242 DDDDEEEDEDEEEDEEEEEDEEEEEEEEEEEPVKPAPGKRKKEMTKQKEVPEAKKQKVEG 301

Query:   176 KTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFV 235
                  S S T   LFIGN+  N +  E +  I +  P  +    + D +  + NR F +V
Sbjct:   302 -----SESTTPFNLFIGNLNPNKSVAELKVAISE--PFAKNDLAVVDVRTGT-NRKFGYV 353

Query:   236 LYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTS 295
              +   +  D  +   L    K+ GN   I    PK        A+  + L  KN+  N +
Sbjct:   354 DF--ESAEDLEKALELTG-LKVFGNE--IKLEKPKGRDSKKVRAA--RTLLAKNLSFNIT 406

Query:   296 TEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355
              +++KE+F+   E+ ++V   GKS  +   +I +   + A K +++ +  EIDG+ + + 
Sbjct:   407 EDELKEVFEDALEI-RLVSQDGKS--KGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 463

Query:   356 LA--KPQTDKKT 365
                 K Q  ++T
Sbjct:   464 YTGEKGQRQERT 475

 Score = 48 (22.0 bits), Expect = 3.0e-17, Sum P(2) = 3.0e-17
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query:    55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHA 97
             +K  A E D   E + ++++    EE+E+      E+E  K A
Sbjct:   235 AKNVAEEDDDDEEEDEDEEEDEEEEEDEEEEEEEEEEEPVKPA 277

 Score = 42 (19.8 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
 Identities = 8/29 (27%), Positives = 17/29 (58%)

Query:    54 HSKAGASEKDQSAEANRNDDDTPHVEEEE 82
             ++K   S++D+  + + +D D    +EEE
Sbjct:   138 NAKKEDSDEDEDDDDDEDDSDEDEEDEEE 166

 Score = 37 (18.1 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
 Identities = 7/28 (25%), Positives = 13/28 (46%)

Query:    76 PHVEEEEKPTASVGEDEKDKHAQLLALP 103
             P   EE+     + E+E D   + + +P
Sbjct:    21 PKEVEEDSEDEEMSEEEDDSSGEEVVIP 48


>UNIPROTKB|P20965 [details] [associations]
            symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
            species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
            "poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
            initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
            self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
            evidence=IDA] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
            GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
            GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
            EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
            ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
            KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
        Length = 633

 Score = 237 (88.5 bits), Expect = 3.9e-17, P = 3.9e-17
 Identities = 65/266 (24%), Positives = 130/266 (48%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L +D +E  L +   P G +  +R+ +D  +  S G+A+V+F+    A++A+D
Sbjct:    11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++   +KG+ +R   S+    L    +GN+  KN  +    K + D       I   K 
Sbjct:    71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               + + ++G+ FV +     A+ +  KM N     D       +   K    +  A A +
Sbjct:   131 VCDENGSKGYGFVHFETQEAAERAIDKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
                +Y+KN  D+ + E++KE+F ++G    V +    +GK + FGF+ +     A KAV 
Sbjct:   190 FTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVD 249

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
             +    +++G+ + V  A+ + +++TE
Sbjct:   250 EMNGKDMNGKSMFVGRAQKKVERQTE 275

 Score = 153 (58.9 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
 Identities = 32/97 (32%), Positives = 58/97 (59%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  K++ A+L A     + V+I     D ++E L+++    G    V++M D ++G+SKG
Sbjct:   174 KSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTD-DNGKSKG 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
             F FVSF   E A+KA+DE++ K++ GK++    ++ K
Sbjct:   233 FGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKK 269

 Score = 124 (48.7 bits), Expect = 0.00017, P = 0.00017
 Identities = 51/235 (21%), Positives = 104/235 (44%)

Query:   162 KKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             K  +    S++ +   +     E  N ++I N   +  ++  +++    GP + +++++ 
Sbjct:   167 KVFVGRFKSRKEREAELGARAKEFTN-VYIKNFGDDMNDERLKEMFGKYGPAL-SVKVMT 224

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--STPDHSAAA 279
             D    S+  GF FV +  +  A  +  +M N    ++G +  +  A  K     +     
Sbjct:   225 DDNGKSK--GFGFVSFERHEDAQKAVDEM-NGK-DMNGKSMFVGRAQKKVERQTELKRKF 280

Query:   280 SQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFI 327
              Q+K           LYVKN+ D    E++++ F   G +T  KV+M  G+S  + FGF+
Sbjct:   281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRS--KGFGFV 338

Query:   328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPH 382
              ++    A KAV +     +  + L V LA+ + +++   T  Y   +    +P+
Sbjct:   339 CFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRVPN 393

 Score = 38 (18.4 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query:   260 NTPTISWADPKSTPDHSAAASQVKAL 285
             NT T +   P+ T   +AAAS V+A+
Sbjct:   483 NTSTQTMG-PRPTTAAAAAASAVRAV 507


>RGD|1563142 [details] [associations]
            symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
            GeneTree:ENSGT00640000091232 IPI:IPI00778604
            ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
            UCSC:RGD:1563142 Uniprot:D3ZAS7
        Length = 607

 Score = 236 (88.1 bits), Expect = 4.7e-17, P = 4.7e-17
 Identities = 72/269 (26%), Positives = 127/269 (47%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             S +++G L  D +E  L ++  PIG +  +R+ +D  +  S G+A+++F+    A++A+D
Sbjct:    11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70

Query:   167 ELHSKELKGKTIRCSLSETK---NRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++ + +KG+ IR   S       R  +GN+  KN       K + D      +I   K 
Sbjct:    71 TMNFEMIKGQPIRIMWSHRDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILSSKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNA--NFKLDGNTPTISW--ADPKSTPDHSAA 278
               N   +RGF FV +  +  A    QK +N      L+     +    +  K   +  A 
Sbjct:   131 VYNEHGSRGFGFVHFETHEAA----QKAINTMNGMLLNDRKVFVGHFKSRQKREAELGAR 186

Query:   279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
             A     +YVKN+  +   + +++LF + G+   V VM       R FGFI++ +   A K
Sbjct:   187 ALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQK 246

Query:   338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
             AV      E+ GQ+L V  A+ + +++ E
Sbjct:   247 AVDHMNGKEVSGQLLYVGRAQKRAERQNE 275

 Score = 137 (53.3 bits), Expect = 5.9e-06, P = 5.9e-06
 Identities = 27/89 (30%), Positives = 52/89 (58%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  + + A+L A     + +++  L  D  E+ L+DL    G    V++M+D  +G+S+G
Sbjct:   174 KSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDS-NGQSRG 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
             F F++F   E A+KA+D ++ KE+ G+ +
Sbjct:   233 FGFINFEKHEEAQKAVDHMNGKEVSGQLL 261

 Score = 119 (46.9 bits), Expect = 0.00056, P = 0.00056
 Identities = 42/195 (21%), Positives = 88/195 (45%)

Query:   189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
             +++ N+  +  E   + +    G   +++++++D    SR  GF F+ +  +  A  +  
Sbjct:   193 IYVKNLRVDMDEQGLQDLFSQFGK-TQSVKVMRDSNGQSR--GFGFINFEKHEEAQKAVD 249

Query:   249 KMLNANFKLDGNTPTISWADPKSTPDHSAAA--SQVKA----------LYVKNIPDNTST 296
              M N   ++ G    +  A  ++   +       Q+K           LYVKN+ D+ + 
Sbjct:   250 HM-NGK-EVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSIND 307

Query:   297 EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356
             +++KE+F  +G +T   +    S  + FGF+ ++    A KAV +     +  + L V L
Sbjct:   308 DRLKEVFSTYGVITSAKVMTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVAL 367

Query:   357 AKPQTDKKTEGTFPY 371
             A+ + ++K   T  Y
Sbjct:   368 AQRKEERKAILTNQY 382


>UNIPROTKB|Q6IP09 [details] [associations]
            symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
            species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
            [GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
            "eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
            "protein self-association" evidence=ISS] [GO:0048255 "mRNA
            stabilization" evidence=ISS] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
            GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
            GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
            UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
            GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
            Uniprot:Q6IP09
        Length = 633

 Score = 236 (88.1 bits), Expect = 5.1e-17, P = 5.1e-17
 Identities = 67/266 (25%), Positives = 126/266 (47%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  D +E  L +   P G +  +R+ +D  +  S G+A+V+F+    A++A+D
Sbjct:    11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++   +KGK +R   S+    L    +GN+  KN  +    K + D       I   K 
Sbjct:    71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               + + ++G+ FV +     A+ +  KM N     D       +   K    +  A A +
Sbjct:   131 VCDENGSKGYGFVHFETQEAAERAIDKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
                +Y+KN  ++   E++KE F ++G    V +     GK R FGF+ +     A KAV 
Sbjct:   190 FTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVD 249

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
             D    +++G+ + V  A+ + +++TE
Sbjct:   250 DMNGKDLNGKAIFVGRAQKKVERQTE 275

 Score = 145 (56.1 bits), Expect = 8.2e-07, P = 8.2e-07
 Identities = 32/97 (32%), Positives = 55/97 (56%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  K++ A+L A     + V+I    +D  +E L++     G    V++M D + G+S+G
Sbjct:   174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTD-DHGKSRG 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
             F FVSF   E A+KA+D+++ K+L GK I    ++ K
Sbjct:   233 FGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKK 269

 Score = 117 (46.2 bits), Expect = 0.00099, P = 0.00099
 Identities = 52/235 (22%), Positives = 101/235 (42%)

Query:   162 KKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             K  +    S++ +   +     E  N ++I N  ++  ++  ++     G  + +++++ 
Sbjct:   167 KVFVGRFKSRKEREAELGARAKEFTN-VYIKNFGEDMDDERLKEWFGQYGAAL-SVKVMT 224

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--STPDHSAAA 279
             D    SR  GF FV +  +  A  +   M N    L+G    +  A  K     +     
Sbjct:   225 DDHGKSR--GFGFVSFERHEDAQKAVDDM-NGK-DLNGKAIFVGRAQKKVERQTELKRKF 280

Query:   280 SQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFI 327
              Q+K           LYVKN+ D    E++++ F   G +T  KV+M  G+S  + FGF+
Sbjct:   281 EQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGRS--KGFGFV 338

Query:   328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPH 382
              ++    A KAV +     +  + L V LA+ + +++   T  Y   +    +P+
Sbjct:   339 CFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRVPN 393


>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
            symbol:pabpc1a "poly A binding protein,
            cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
            EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
            UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
            GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
            NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
        Length = 634

 Score = 236 (88.1 bits), Expect = 5.1e-17, P = 5.1e-17
 Identities = 65/266 (24%), Positives = 130/266 (48%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  D +E  L +   P G +  +R+ +D  +  S G+A+V+F+    A++A+D
Sbjct:    11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAERALD 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++   +KG+ +R   S+    L    +GN+  KN  +    K + D       I   K 
Sbjct:    71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               + + ++G+ FV +  +  A+ + +KM N     D       +   K    +  A A +
Sbjct:   131 VCDENGSKGYGFVHFETHEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAEMGARAKE 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
                +Y+KN  ++   EK+KE+F ++G    + +    SGK + FGF+ +     A +AV 
Sbjct:   190 FTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVD 249

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
             +    E++G+ + V  A+ + +++TE
Sbjct:   250 EMNGKEMNGKQVYVGRAQKKGERQTE 275

 Score = 157 (60.3 bits), Expect = 3.9e-08, P = 3.9e-08
 Identities = 32/97 (32%), Positives = 57/97 (58%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  K++ A++ A     + V+I    +D  +E L+++    G    +R+M D +SG+SKG
Sbjct:   174 KSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTD-DSGKSKG 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
             F FVSF   E A++A+DE++ KE+ GK +    ++ K
Sbjct:   233 FGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKK 269

 Score = 124 (48.7 bits), Expect = 0.00017, P = 0.00017
 Identities = 46/197 (23%), Positives = 94/197 (47%)

Query:   189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
             ++I N  ++  +++ +++    GP + +I ++ D  +  +++GF FV +  +  A  +  
Sbjct:   193 VYIKNFGEDMDDEKLKEIFCKYGPAL-SIRVMTD--DSGKSKGFGFVSFERHEDAQRAVD 249

Query:   249 KMLNANFKLDGNTPTISWADPKST--PDHSAAASQVKA----------LYVKNIPDNTST 296
             +M N   +++G    +  A  K     +      Q+K           LYVKN+ D    
Sbjct:   250 EM-NGK-EMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDD 307

Query:   297 EKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354
             E++++ F   G +T  KV+M  G+S  + FGF+ ++    A KAV +     +  + L V
Sbjct:   308 ERLRKEFSPFGTITSAKVMMEGGRS--KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYV 365

Query:   355 VLAKPQTDKKTEGTFPY 371
              LA+ + +++   T  Y
Sbjct:   366 ALAQRKEERQAHLTSQY 382


>UNIPROTKB|F1NZU2 [details] [associations]
            symbol:SYNCRIP "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GeneTree:ENSGT00550000074366
            GO:GO:0003676 EMBL:AADN02002396 IPI:IPI00570859
            Ensembl:ENSGALT00000025521 ArrayExpress:F1NZU2 Uniprot:F1NZU2
        Length = 447

 Score = 142 (55.0 bits), Expect = 6.3e-17, Sum P(2) = 6.3e-17
 Identities = 26/63 (41%), Positives = 46/63 (73%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G+E+F+G +P+D  E++L  L E  G ++++RLM D  +G ++G+AFV+F +KE A+
Sbjct:   157 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 216

Query:   163 KAI 165
             +A+
Sbjct:   217 EAV 219

 Score = 140 (54.3 bits), Expect = 6.3e-17, Sum P(2) = 6.3e-17
 Identities = 43/136 (31%), Positives = 68/136 (50%)

Query:   278 AASQVKALYVKNIPDNTSTEKIKE-LFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336
             A   VK L+V+N+  NT TE+I E  F + G++ +V     K  K D+ FIH+ ER  A+
Sbjct:   218 AVKLVKVLFVRNLA-NTVTEEILEKAFSQFGKLERV-----KKLK-DYAFIHFDERDGAV 270

Query:   337 KAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSV 396
             KA+++    +++G+ +E+V AKP   K+ E            +  +  YG     P  + 
Sbjct:   271 KAMEEMNGKDLEGENIEIVFAKPPDQKRKERKAQRQAAKNQMYDDYYYYGP-PHMPPPTR 329

Query:   397 GTGFGVAAGFQQPMIY 412
             G G G   G+  P  Y
Sbjct:   330 GRGRGGRGGYGYPPDY 345

 Score = 87 (35.7 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
 Identities = 23/76 (30%), Positives = 39/76 (51%)

Query:   189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
             +F+G +P++  EDE   + E  GP +  + L+ DP     NRG++FV +     A  +  
Sbjct:   163 IFVGKIPRDLFEDELVPLFEKAGP-IWDLRLMMDPLT-GLNRGYAFVTFCTKEAAQEA-V 219

Query:   249 KMLNANFKLD-GNTPT 263
             K++   F  +  NT T
Sbjct:   220 KLVKVLFVRNLANTVT 235


>UNIPROTKB|H7BY16 [details] [associations]
            symbol:NCL "Nucleolin" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC017104 HGNC:HGNC:7667
            ChiTaRS:NCL ProteinModelPortal:H7BY16 PRIDE:H7BY16
            Ensembl:ENST00000356936 Bgee:H7BY16 Uniprot:H7BY16
        Length = 297

 Score = 163 (62.4 bits), Expect = 1.6e-09, P = 1.6e-09
 Identities = 45/166 (27%), Positives = 89/166 (53%)

Query:   111 IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170
             +  L   A+EE L+++ E     F +++ ++ ++G+SKG+AF+ F S E AK+A++  + 
Sbjct:   115 LSNLSYSATEETLQEVFEKA--TF-IKVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNK 170

Query:   171 KELKGKTIRCSLSETKNRLFIGNVP------KNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
             +E++G+ IR  L   +      + P      K  +ED   + +++   G     ++ D +
Sbjct:   171 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRE 230

Query:   225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
               S ++GF FV + +   A  +++ M +   ++DGN  T+ WA PK
Sbjct:   231 TGS-SKGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPK 273

 Score = 160 (61.4 bits), Expect = 9.0e-17, Sum P(2) = 9.0e-17
 Identities = 62/226 (27%), Positives = 110/226 (48%)

Query:   176 KTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS-RNRGFSF 234
             +T++  L E+K  L + N+  + TE+  ++V E           IK PQN + +++G++F
Sbjct:   101 RTLQHVLGESKT-LVLSNLSYSATEETLQEVFEKA-------TFIKVPQNQNGKSKGYAF 152

Query:   235 VLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDN 293
             + +   A  + +++ + + N + ++G    +    P+ +P+  A +   K L+VK + ++
Sbjct:   153 IEF---ASFEDAKEALNSCNKREIEGRAIRLELQGPRGSPN--ARSQPSKTLFVKGLSED 207

Query:   294 TSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT-EKYEIDGQV 351
             T+ E +KE F   G V   ++   ++G  + FGF+ +     A KA K+  E  EIDG  
Sbjct:   208 TTEETLKESFD--GSVRARIVTDRETGSSKGFGFVDFNSEEDA-KAAKEAMEDGEIDGNK 264

Query:   352 LEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVG 397
             + +  AKP    K EG F    G         G GGF G   G  G
Sbjct:   265 VTLDWAKP----KGEGGFGGRGG---------GRGGFGGRGGGRGG 297

 Score = 127 (49.8 bits), Expect = 2.1e-05, P = 2.1e-05
 Identities = 28/78 (35%), Positives = 46/78 (58%)

Query:   109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
             +F+ GL +D +EE L++  +  G V   R++ D+E+G SKGF FV F S+E AK A + +
Sbjct:   199 LFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAM 255

Query:   169 HSKELKGKTIRCSLSETK 186
                E+ G  +    ++ K
Sbjct:   256 EDGEIDGNKVTLDWAKPK 273

 Score = 110 (43.8 bits), Expect = 9.0e-17, Sum P(2) = 9.0e-17
 Identities = 27/94 (28%), Positives = 53/94 (56%)

Query:   114 LPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL 173
             LP   ++++L+++ E   D  E+RL+   + G+SKG A++ F+++  A+K  +E    E+
Sbjct:     1 LPYKVTQDELKEVFE---DAAEIRLVS--KDGKSKGIAYIEFKTEADAEKTFEEKQGTEI 55

Query:   174 KGKTIRCSLSETK--NRLFIGNVPKNWTEDEFRK 205
              G++I    +  K  N+ + G     W++D  RK
Sbjct:    56 DGRSISLYYTGEKGQNQDYRGGKNSTWSDDS-RK 88


>UNIPROTKB|Q9H361 [details] [associations]
            symbol:PABPC3 "Polyadenylate-binding protein 3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
            "poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
            process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
            eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
            EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
            PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
            IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
            PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
            GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
            GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
            PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
            PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
            NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
            Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
        Length = 631

 Score = 233 (87.1 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 67/270 (24%), Positives = 131/270 (48%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P  S +++G L  D +E  L +   P G +  +R+ +D  +  S  +A+V+F+  + A+ 
Sbjct:     9 PTAS-LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67

Query:   164 AIDELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
             A+D ++   +KGK +R   S+    L    +GN+  KN  +    K + D       I  
Sbjct:    68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127

Query:   220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS--A 277
                  + + ++G+ FV +  +  A+ + +KM N    L+G    +     +   +    A
Sbjct:   128 CNVVCDENGSKGYGFVHFETHEAAERAIKKM-NGML-LNGRKVFVGQFKSRKEREAELGA 185

Query:   278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSAL 336
              A +   +Y+KN  ++   E++K+LF + G    V +   +SGK + FGF+ +     A 
Sbjct:   186 RAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 245

Query:   337 KAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
             KAV +    E++G+ + V  A+ + +++TE
Sbjct:   246 KAVDEMNGKELNGKQIYVGRAQKKVERQTE 275

 Score = 172 (65.6 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 39/97 (40%), Positives = 56/97 (57%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  K++ A+L A       V+I    +D  +E L+DL    G    V++M D ESG+SKG
Sbjct:   174 KSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
             F FVSF   E A+KA+DE++ KEL GK I    ++ K
Sbjct:   233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 269

 Score = 126 (49.4 bits), Expect = 0.00010, P = 0.00010
 Identities = 58/242 (23%), Positives = 106/242 (43%)

Query:   162 KKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             K  + +  S++ +   +     E  N ++I N  ++  ++  + +    GP + +++++ 
Sbjct:   167 KVFVGQFKSRKEREAELGARAKEFPN-VYIKNFGEDMDDERLKDLFGKFGPAL-SVKVMT 224

Query:   222 DPQNPSRNRGF-SFVLYYN-NACADYSRQKMLN--------ANFKLDGNTPTISWADPKS 271
             D    S+  GF SF  + +     D    K LN        A  K++  T  +     + 
Sbjct:   225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTE-LKRTFEQM 283

Query:   272 TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHY 329
               D      QV  LYVKN+ D    E++++ F   G +T  KV+M  G+S  + FGF+ +
Sbjct:   284 KQDR-ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRS--KGFGFVCF 340

Query:   330 AERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY-----SPGLVPTH-LPHA 383
             +    A KAV +     +  + L V LA+ + +++   T  Y     S   VP    P +
Sbjct:   341 SSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQRMASVRAVPNQRAPPS 400

Query:   384 GY 385
             GY
Sbjct:   401 GY 402


>UNIPROTKB|Q4VY17 [details] [associations]
            symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
            EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
            IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
            Ensembl:ENST00000537323 Uniprot:Q4VY17
        Length = 330

 Score = 223 (83.6 bits), Expect = 1.3e-16, P = 1.3e-16
 Identities = 66/266 (24%), Positives = 126/266 (47%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  D +E  L +   P G +  +R+ +D  +  S G+A+++F+    A++A+D
Sbjct:    11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++ + LKG+ IR   S+    L    +GN+  KN  +    K + D       I   K 
Sbjct:    71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               +   +RGF FV +  +  A  +   M N     D       +   +    +  A A +
Sbjct:   131 ACDEHGSRGFGFVHFETHEAAQQAINTM-NGMLLNDRKVFVGHFKSRREREAELGARALE 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
                +YVKN+P +   + +++LF + G++  V +    SG  R FGF+++ +   A KAV 
Sbjct:   190 FTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVV 249

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
                  E+ G++L    A+ + +++ E
Sbjct:   250 HMNGKEVSGRLLYAGRAQKRVERQNE 275

 Score = 140 (54.3 bits), Expect = 8.0e-09, Sum P(2) = 8.0e-09
 Identities = 28/89 (31%), Positives = 52/89 (58%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  +++ A+L A     + +++  LP D  E+ L+DL    G +  V++M+D  SG S+ 
Sbjct:   174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRC 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
             F FV+F   E A+KA+  ++ KE+ G+ +
Sbjct:   233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261

 Score = 59 (25.8 bits), Expect = 8.0e-09, Sum P(2) = 8.0e-09
 Identities = 10/26 (38%), Positives = 18/26 (69%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEVT 310
             LYVKN+ D+   +K+++ F  +G +T
Sbjct:   296 LYVKNLDDSIDDDKLRKEFSPYGVIT 321


>UNIPROTKB|Q98SP8 [details] [associations]
            symbol:epabp-a "Embryonic polyadenylate-binding protein A"
            species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
            "poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
            initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
            embryonic development" evidence=IEP] [GO:0043621 "protein
            self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
            evidence=IDA] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
            HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
            RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
            SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
            Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
        Length = 629

 Score = 232 (86.7 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 65/266 (24%), Positives = 128/266 (48%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + ++IG L  D +E  L +   P G +  +R+ +D  +  S  +A+++F+    A++A+D
Sbjct:    11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALD 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++ + +KG+ IR   S+    L    +GNV  KN  E    K + D       I   K 
Sbjct:    71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               +   +RG+ FV +  +  A+ + Q M N     D       +   +    ++ A   +
Sbjct:   131 VCDEHGSRGYGFVHFETHEAANRAIQTM-NGMLLNDRKVFVGHFKSRRERELEYGAKVME 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
                +Y+KN  ++   ++++E+F   G    V +    SG+ R FGF++Y     A KAV 
Sbjct:   190 FTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVS 249

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
             +    E++G+++ V  A+ + ++++E
Sbjct:   250 EMNGKEVNGRMIYVGRAQKRIERQSE 275

 Score = 119 (46.9 bits), Expect = 0.00059, P = 0.00059
 Identities = 51/214 (23%), Positives = 95/214 (44%)

Query:   189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
             ++I N  ++  +   R++    G  + +++++ D  +  R+RGF FV Y N+  A  +  
Sbjct:   193 VYIKNFGEDMDDKRLREIFSAFGNTL-SVKVMMD--DSGRSRGFGFVNYGNHEEAQKAVS 249

Query:   249 KMLNANFKLDGNTPTISWADPK--STPDHSAAASQVKA----------LYVKNIPDNTST 296
             +M N   +++G    +  A  +     +      Q+K           LYVKN+ D    
Sbjct:   250 EM-NGK-EVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDD 307

Query:   297 EKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355
             +++++ F  +G +T   VM  G   K  FGF+ ++    A KAV +     +  + L V 
Sbjct:   308 DRLRKEFLPYGTITSAKVMTEGGHSK-GFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366

Query:   356 LAKPQTDKKTEGTFPYSPGLVPTH-LPHAGYGGF 388
             LA+ + ++K   T  Y   L     +P    G F
Sbjct:   367 LAQRKEERKAILTNQYMQRLATMRAMPGPLLGSF 400


>UNIPROTKB|G3MYJ0 [details] [associations]
            symbol:G3MYJ0 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
            Ensembl:ENSBTAT00000064073 Uniprot:G3MYJ0
        Length = 625

 Score = 224 (83.9 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
 Identities = 92/354 (25%), Positives = 167/354 (47%)

Query:    82 EKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD 141
             EKP     + +KD+ A+ L L  N        LP   ++++L+++ E   D  E+RL+  
Sbjct:   301 EKPKGK--DSKKDRDARTL-LAKN--------LPYKVTQDELKEVFE---DAVEIRLVS- 345

Query:   142 KESGESKGFAFVSFRSKEFAKKAIDELHSKEL-----KGKTI--RCSLSET----KNRLF 190
              + G+SKG A++ F+++  A+K ++E    E+     KG++   R   + T       L 
Sbjct:   346 -KDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLV 404

Query:   191 IGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS-RNRGFSFVLYYNNACADYSRQK 249
             + N+  + TE+  ++V E           IK PQN + +++G++F+ +   A  + +++ 
Sbjct:   405 LSNLSYSATEETLQEVFEKATH-------IKVPQNQNGKSKGYAFIEF---ASFEDAKEA 454

Query:   250 MLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308
             + + N + ++G    +    P+ +P+  A +   K L+VK + ++T+ E +KE F   G 
Sbjct:   455 LNSCNKREIEGRAIRLELQGPRGSPN--ARSQPSKTLFVKGLSEDTTEETLKESFD--GS 510

Query:   309 VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT-EKYEIDGQVLEVVLAKPQTDKKTE 366
             +   ++   ++G  + FGF+ +     A KA K+  E  EIDG  + +  AKP+ +    
Sbjct:   511 IRARIVTDRETGSSKGFGFVDFNSEEDA-KAAKEAMEDGEIDGNKVTLDWAKPKGEGGFG 569

Query:   367 GTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSG 420
             G      G         G GGF G   G    GFG   GF+     G    P G
Sbjct:   570 GRGGGRGGFGGRGGGRGGRGGFGGRGRG----GFGGRGGFRGGRGGGGDQKPHG 619

 Score = 167 (63.8 bits), Expect = 3.0e-09, P = 3.0e-09
 Identities = 54/226 (23%), Positives = 104/226 (46%)

Query:    55 SKAGASEKDQSAEANRNDDDTPHVEEEEKP----TASVGEDEKDKHAQLLALPPNGSEVF 110
             SK G S+     E     D    +EE++      T   G+ +  +  +          + 
Sbjct:   345 SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLV 404

Query:   111 IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170
             +  L   A+EE L+++ E    +     +   ++G+SKG+AF+ F S E AK+A++  + 
Sbjct:   405 LSNLSYSATEETLQEVFEKATHI----KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNK 460

Query:   171 KELKGKTIRCSLSETKNRLFIGNVP------KNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
             +E++G+ IR  L   +      + P      K  +ED   + +++   G     ++ D +
Sbjct:   461 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSIRARIVTDRE 520

Query:   225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
               S ++GF FV + +   A  +++ M +   ++DGN  T+ WA PK
Sbjct:   521 TGS-SKGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPK 563

 Score = 124 (48.7 bits), Expect = 0.00017, P = 0.00017
 Identities = 74/305 (24%), Positives = 123/305 (40%)

Query:    58 GASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDE-------KDKHAQLLALPPNGSEVF 110
             GA+      +   +DDD    EEEE+      E+E       K K A   A+P       
Sbjct:    91 GAAPATDDEDDEDDDDDDDEEEEEEEEDEDDSEEEPMEIVPAKGKKAPAKAVPVKAKSTA 150

Query:   111 IGGLPKD-----ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFV-SFRSKEFAK-K 163
                  +D       EE+  D  E   D  E    +++E  E +        R KE AK K
Sbjct:   151 EDEDEEDDDDDDEEEEEEDDDDEDDHDDEEEEEEEEEEEEEEEPVKEAPGKRKKEMAKQK 210

Query:   164 AIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
             A  E   ++++G     S +     LF+GN+  N +  E +  I D+      + ++   
Sbjct:   211 AAPEAKKQKVEGTEPTTSFN-----LFVGNLNFNKSAPELKTGISDLF-AKNDLAVVDVR 264

Query:   224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVK 283
                SR   F +V +   +  D  +   L    K+ GN   I    PK     S      +
Sbjct:   265 IGVSRK--FGYVDF--ESAEDLEKALELTG-LKVFGNE--IKLEKPKGKD--SKKDRDAR 315

Query:   284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
              L  KN+P   + +++KE+F+   E+ ++V   GKS  +   +I +   + A K +++ +
Sbjct:   316 TLLAKNLPYKVTQDELKEVFEDAVEI-RLVSKDGKS--KGIAYIEFKTEADAEKTLEEKQ 372

Query:   344 KYEID 348
               EID
Sbjct:   373 GTEID 377

 Score = 49 (22.3 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
 Identities = 12/43 (27%), Positives = 23/43 (53%)

Query:    56 KAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQ 98
             KA ++ +D+  E +  DDD    EEE+       +DE+++  +
Sbjct:   145 KAKSTAEDEDEEDD--DDDDEEEEEEDDDDEDDHDDEEEEEEE 185

 Score = 41 (19.5 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query:    66 AEANRNDDDTPHVEEEEKPTASVGEDEKDKHA 97
             A+A +N  D+  +    K      EDE+ K A
Sbjct:     5 AKAGKNQGDSKKMAPPPKEVEEDSEDEEIKRA 36


>UNIPROTKB|G3X7M4 [details] [associations]
            symbol:G3X7M4 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
            Ensembl:ENSBTAT00000038502 OMA:ENAMEIR Uniprot:G3X7M4
        Length = 630

 Score = 224 (83.9 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
 Identities = 92/354 (25%), Positives = 167/354 (47%)

Query:    82 EKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD 141
             EKP     + +KD+ A+ L L  N        LP   ++++L+++ E   D  E+RL+  
Sbjct:   306 EKPKGK--DSKKDRDARTL-LAKN--------LPYKVTQDELKEVFE---DAVEIRLVS- 350

Query:   142 KESGESKGFAFVSFRSKEFAKKAIDELHSKEL-----KGKTI--RCSLSET----KNRLF 190
              + G+SKG A++ F+++  A+K ++E    E+     KG++   R   + T       L 
Sbjct:   351 -KDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLV 409

Query:   191 IGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS-RNRGFSFVLYYNNACADYSRQK 249
             + N+  + TE+  ++V E           IK PQN + +++G++F+ +   A  + +++ 
Sbjct:   410 LSNLSYSATEETLQEVFEKATH-------IKVPQNQNGKSKGYAFIEF---ASFEDAKEA 459

Query:   250 MLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308
             + + N + ++G    +    P+ +P+  A +   K L+VK + ++T+ E +KE F   G 
Sbjct:   460 LNSCNKREIEGRAIRLELQGPRGSPN--ARSQPSKTLFVKGLSEDTTEETLKESFD--GS 515

Query:   309 VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT-EKYEIDGQVLEVVLAKPQTDKKTE 366
             +   ++   ++G  + FGF+ +     A KA K+  E  EIDG  + +  AKP+ +    
Sbjct:   516 IRARIVTDRETGSSKGFGFVDFNSEEDA-KAAKEAMEDGEIDGNKVTLDWAKPKGEGGFG 574

Query:   367 GTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSG 420
             G      G         G GGF G   G    GFG   GF+     G    P G
Sbjct:   575 GRGGGRGGFGGRGGGRGGRGGFGGRGRG----GFGGRGGFRGGRGGGGDQKPHG 624

 Score = 167 (63.8 bits), Expect = 3.0e-09, P = 3.0e-09
 Identities = 54/226 (23%), Positives = 104/226 (46%)

Query:    55 SKAGASEKDQSAEANRNDDDTPHVEEEEKP----TASVGEDEKDKHAQLLALPPNGSEVF 110
             SK G S+     E     D    +EE++      T   G+ +  +  +          + 
Sbjct:   350 SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLV 409

Query:   111 IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170
             +  L   A+EE L+++ E    +     +   ++G+SKG+AF+ F S E AK+A++  + 
Sbjct:   410 LSNLSYSATEETLQEVFEKATHI----KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNK 465

Query:   171 KELKGKTIRCSLSETKNRLFIGNVP------KNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
             +E++G+ IR  L   +      + P      K  +ED   + +++   G     ++ D +
Sbjct:   466 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSIRARIVTDRE 525

Query:   225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
               S ++GF FV + +   A  +++ M +   ++DGN  T+ WA PK
Sbjct:   526 TGS-SKGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPK 568

 Score = 124 (48.7 bits), Expect = 0.00017, P = 0.00017
 Identities = 74/305 (24%), Positives = 123/305 (40%)

Query:    58 GASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDE-------KDKHAQLLALPPNGSEVF 110
             GA+      +   +DDD    EEEE+      E+E       K K A   A+P       
Sbjct:    96 GAAPATDDEDDEDDDDDDDEEEEEEEEDEDDSEEEPMEIVPAKGKKAPAKAVPVKAKSTA 155

Query:   111 IGGLPKD-----ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFV-SFRSKEFAK-K 163
                  +D       EE+  D  E   D  E    +++E  E +        R KE AK K
Sbjct:   156 EDEDEEDDDDDDEEEEEEDDDDEDDHDDEEEEEEEEEEEEEEEPVKEAPGKRKKEMAKQK 215

Query:   164 AIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
             A  E   ++++G     S +     LF+GN+  N +  E +  I D+      + ++   
Sbjct:   216 AAPEAKKQKVEGTEPTTSFN-----LFVGNLNFNKSAPELKTGISDLF-AKNDLAVVDVR 269

Query:   224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVK 283
                SR   F +V +   +  D  +   L    K+ GN   I    PK     S      +
Sbjct:   270 IGVSRK--FGYVDF--ESAEDLEKALELTG-LKVFGNE--IKLEKPKGKD--SKKDRDAR 320

Query:   284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
              L  KN+P   + +++KE+F+   E+ ++V   GKS  +   +I +   + A K +++ +
Sbjct:   321 TLLAKNLPYKVTQDELKEVFEDAVEI-RLVSKDGKS--KGIAYIEFKTEADAEKTLEEKQ 377

Query:   344 KYEID 348
               EID
Sbjct:   378 GTEID 382

 Score = 49 (22.3 bits), Expect = 1.8e-16, Sum P(2) = 1.8e-16
 Identities = 12/43 (27%), Positives = 23/43 (53%)

Query:    56 KAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQ 98
             KA ++ +D+  E +  DDD    EEE+       +DE+++  +
Sbjct:   150 KAKSTAEDEDEEDD--DDDDEEEEEEDDDDEDDHDDEEEEEEE 190

 Score = 44 (20.5 bits), Expect = 6.1e-16, Sum P(2) = 6.1e-16
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query:    56 KAGASEKDQSAEANRNDDDTPHVEEEEKP--TASVGEDEKDK 95
             K  + E+D+      +D+D P V +       A   +DE D+
Sbjct:    66 KEDSDEEDEDDSEEEDDEDEPAVRKAAAAFGAAPATDDEDDE 107


>UNIPROTKB|Q6GR16 [details] [associations]
            symbol:epabp-b "Embryonic polyadenylate-binding protein B"
            species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
            [GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
            "eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
            "chordate embryonic development" evidence=ISS] [GO:0043621 "protein
            self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
            evidence=ISS] [GO:0060212 "negative regulation of
            nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
            GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
            SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
            RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
            SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
            Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
        Length = 629

 Score = 231 (86.4 bits), Expect = 1.9e-16, P = 1.9e-16
 Identities = 66/266 (24%), Positives = 127/266 (47%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + ++IG L  D +E  L +   P G +  +R+ +D  +  S G+A+++F+    A++A+D
Sbjct:    11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++ + +KG+ IR   S+    L    +GNV  KN  +    K + D       I   K 
Sbjct:    71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               +   +RG+ FV +     A+ + Q M N     D       +   +    ++ A   +
Sbjct:   131 VCDEYGSRGYGFVHFETQEAANRAIQTM-NGMLLNDRKVFVGHFKSRRERELEYGAKVME 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
                +Y+KN  ++   +++KE+F   G    V +    SG+ R FGF++Y     A KAV 
Sbjct:   190 FTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVT 249

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
             +    E++G+++ V  A+ + +++ E
Sbjct:   250 EMNGKEVNGRMVYVGRAQKRIERQGE 275

 Score = 122 (48.0 bits), Expect = 0.00028, P = 0.00028
 Identities = 53/208 (25%), Positives = 90/208 (43%)

Query:   196 KNWTEDEFRKVIEDVGPGV-ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN 254
             KN+ ED   K ++++      T+ +     N  R+RGF FV Y N+  A  +  +M N  
Sbjct:   196 KNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEM-NGK 254

Query:   255 FKLDGNTPTISWADPK--STPDHSAAASQVKA----------LYVKNIPDNTSTEKIKEL 302
              +++G    +  A  +     +      Q+K           LYVKN+ D    +++++ 
Sbjct:   255 -EVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKE 313

Query:   303 FQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361
             F  +G +T   VM  G   K  FGF+ ++    A KAV +     +  + L V LA+ + 
Sbjct:   314 FSPYGTITSTKVMTEGGHSK-GFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKE 372

Query:   362 DKKTEGTFPYSPGLVPTH-LPHAGYGGF 388
             ++K   T  Y   L     +P    G F
Sbjct:   373 ERKAILTNQYMQRLATMRAMPGPLLGSF 400


>UNIPROTKB|Q6DEY7 [details] [associations]
            symbol:epabp "Embryonic polyadenylate-binding protein"
            species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
            evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
            evidence=ISS] [GO:0043009 "chordate embryonic development"
            evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
            [GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
            "negative regulation of nuclear-transcribed mRNA poly(A) tail
            shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
            eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
            ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
            GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
            HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
            Uniprot:Q6DEY7
        Length = 629

 Score = 230 (86.0 bits), Expect = 2.5e-16, P = 2.5e-16
 Identities = 64/266 (24%), Positives = 127/266 (47%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  D +E  L +   P G +  +R+ +D  +  S G+A+++F+    A++A+D
Sbjct:    11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++ + +KG+ IR   S+    L    +GNV  KN  E    K + D       I   K 
Sbjct:    71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               +   +RG+ FV +     A+ + Q M N     D       +   +    ++ A   +
Sbjct:   131 VCDEHGSRGYGFVHFETQEAANRAIQTM-NGMLLNDRKVFVGHFKSRRERELEYGAKVME 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
                +Y+KN  ++   ++++E+F   G    V +    +G+ R FGF++Y     A KAV 
Sbjct:   190 FTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVS 249

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
             +    E++G+++ V  A+ + +++ E
Sbjct:   250 EMNGKEVNGRMIYVGRAQKRIERQGE 275

 Score = 120 (47.3 bits), Expect = 0.00046, P = 0.00046
 Identities = 51/214 (23%), Positives = 95/214 (44%)

Query:   189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
             ++I N  ++  +   R++    G  + +++++ D  +  R+RGF FV Y N+  A  +  
Sbjct:   193 VYIKNFGEDMDDKRLREIFSAFGNTL-SVKVMMD--DTGRSRGFGFVNYGNHEEAQKAVS 249

Query:   249 KMLNANFKLDGNTPTISWADPK--STPDHSAAASQVKA----------LYVKNIPDNTST 296
             +M N   +++G    +  A  +     +      Q+K           LYVKN+ D    
Sbjct:   250 EM-NGK-EVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDD 307

Query:   297 EKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355
             +++++ F  +G +T   VM  G   K  FGF+ ++    A KAV +     +  + L V 
Sbjct:   308 DRLRKEFSPYGTITSAKVMTEGGHSK-GFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVA 366

Query:   356 LAKPQTDKKTEGTFPYSPGLVPTH-LPHAGYGGF 388
             LA+ + ++K   T  Y   L     +P    G F
Sbjct:   367 LAQRKEERKAILTNQYMQRLATMRAMPGPLLGSF 400


>UNIPROTKB|E2RND1 [details] [associations]
            symbol:PABPC1L "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
            EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
        Length = 644

 Score = 229 (85.7 bits), Expect = 3.3e-16, P = 3.3e-16
 Identities = 67/266 (25%), Positives = 128/266 (48%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  D +E  L +   P G +  +R+ +D  +  S G+A+++F+    A++A+D
Sbjct:    11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++ + +KG+ IR   S+    L    +GN+  KN  +    K + D       I   K 
Sbjct:    71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               +   +RGF FV +  +  A  +   M N     D       +   +    +  A A +
Sbjct:   131 VCDDHGSRGFGFVHFETHEAAQQAITTM-NGMLLNDRKVFVGHFKSRREREVELGARAME 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
                +YVKN+  +   + +++LF R G++  V +    SG  R FGF+++ +   A KAV 
Sbjct:   190 FTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVM 249

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
             D    E+ G++L V  A+ + ++++E
Sbjct:   250 DMNGKEVSGRLLYVGRAQKRVERQSE 275

 Score = 141 (54.7 bits), Expect = 5.2e-13, Sum P(2) = 5.2e-13
 Identities = 27/89 (30%), Positives = 54/89 (60%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  +++  +L A     + +++  L  D  E+ L+DL    G +  V++M+D +SG S+G
Sbjct:   174 KSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRD-DSGHSRG 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
             F FV+F+  E A+KA+ +++ KE+ G+ +
Sbjct:   233 FGFVNFQKHEEAQKAVMDMNGKEVSGRLL 261

 Score = 108 (43.1 bits), Expect = 5.2e-13, Sum P(2) = 5.2e-13
 Identities = 29/88 (32%), Positives = 46/88 (52%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
             LYVKN+ D+   EK+++ F  +G +T   VM  G   K  FGF+ ++    A KAV +  
Sbjct:   296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSK-GFGFVCFSSPEEATKAVTEMN 354

Query:   344 KYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
                +  + L V LA+ + ++K   T  Y
Sbjct:   355 GRILGTKPLYVALAQRKEERKAILTNQY 382


>UNIPROTKB|H3BPI5 [details] [associations]
            symbol:PABPC3 "Polyadenylate-binding protein 3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
            Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
        Length = 255

 Score = 206 (77.6 bits), Expect = 3.8e-16, P = 3.8e-16
 Identities = 61/245 (24%), Positives = 116/245 (47%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P  S +++G L  D +E  L +   P G +  +R+ +D  +  S  +A+V+F+  + A+ 
Sbjct:     9 PTAS-LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEH 67

Query:   164 AIDELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
             A+D ++   +KGK +R   S+    L    +GN+  KN  +    K + D       I  
Sbjct:    68 ALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFGNILS 127

Query:   220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS--A 277
                  + + ++G+ FV +  +  A+ + +KM N    L+G    +     +   +    A
Sbjct:   128 CNVVCDENGSKGYGFVHFETHEAAERAIKKM-NGML-LNGRKVFVGQFKSRKEREAELGA 185

Query:   278 AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSAL 336
              A +   +Y+KN  ++   E++K+LF + G    V +   +SGK + FGF+ +     A 
Sbjct:   186 RAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQ 245

Query:   337 KAVKD 341
             KAV +
Sbjct:   246 KAVDE 250

 Score = 152 (58.6 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 34/83 (40%), Positives = 49/83 (59%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  K++ A+L A       V+I    +D  +E L+DL    G    V++M D ESG+SKG
Sbjct:   174 KSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKE 172
             F FVSF   E A+KA+DE++ KE
Sbjct:   233 FGFVSFERHEDAQKAVDEMNGKE 255

 Score = 116 (45.9 bits), Expect = 0.00026, P = 0.00026
 Identities = 37/179 (20%), Positives = 84/179 (46%)

Query:   189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
             L++G++  + TE    +     GP + +I + +D    S +  +++V + +   A+++  
Sbjct:    13 LYVGDLHPDVTEAMLYEKFSPAGP-ILSIRICRDLIT-SGSSNYAYVNFQHTKDAEHALD 70

Query:   249 KMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG 307
              M   NF  + G    I W    S  D S   S V  ++VKN+  + + + + +     G
Sbjct:    71 TM---NFDVIKGKPVRIMW----SQRDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG 123

Query:   308 EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
              +    +   ++G + +GF+H+    +A +A+K      ++G+ + V   K + +++ E
Sbjct:   124 NILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAE 182


>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
            symbol:pabpc1l "poly(A) binding protein,
            cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
            HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
            UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
            GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
            Bgee:Q803E7 Uniprot:Q803E7
        Length = 620

 Score = 228 (85.3 bits), Expect = 4.0e-16, P = 4.0e-16
 Identities = 66/266 (24%), Positives = 126/266 (47%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  D +E  L     P G +  +R+ +D  +  S G+A+++F+    A+ A+D
Sbjct:    11 ASLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALD 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++ + +KG+ IR   S+    L    +GN+  KN  E    K + D       I   K 
Sbjct:    71 TMNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFSAFGNILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               + + ++G+ FV +     A+ + + M N     D       +   K    +  A A +
Sbjct:   131 VCDENGSKGYGFVHFETQEAANRAIETM-NGMLLNDRKVFVGHFKSRKEREAEMGAKAVE 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVK 340
                +Y+KN  ++  +EK+K +F   G+   V VM   +   R FGF+++     A +AV 
Sbjct:   190 FTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVT 249

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
             +    E++G+VL V  A+ + +++ E
Sbjct:   250 EMNGKELNGRVLYVGRAQKRLERQGE 275

 Score = 126 (49.4 bits), Expect = 9.9e-05, P = 9.9e-05
 Identities = 52/218 (23%), Positives = 93/218 (42%)

Query:   169 HSKELKGKTIRCSLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS 227
             H K  K +         +   ++I N  ++   ++ + +  + G   +T+ +        
Sbjct:   172 HFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFG---KTLSVCVMTDERG 228

Query:   228 RNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--STPDHSAAASQVKA 284
             R+RGF FV + N+  A   R+ +   N K L+G    +  A  +     +      Q+K 
Sbjct:   229 RSRGFGFVNFVNHGDA---RRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQ 285

Query:   285 ----------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERS 333
                       LYVKN+ D+   EK+++ F  +G +T   VM  G    R FGF+ ++   
Sbjct:   286 ERIQRYQGVNLYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTDG-GHSRGFGFVCFSSPE 344

Query:   334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
              A KAV +     +  + L V LA+ + ++K   T  Y
Sbjct:   345 EATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQY 382

 Score = 124 (48.7 bits), Expect = 0.00016, P = 0.00016
 Identities = 27/89 (30%), Positives = 49/89 (55%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  K++ A++ A     + V+I    +D   E L+++    G    V +M D E G S+G
Sbjct:   174 KSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTD-ERGRSRG 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
             F FV+F +   A++A+ E++ KEL G+ +
Sbjct:   233 FGFVNFVNHGDARRAVTEMNGKELNGRVL 261


>UNIPROTKB|A7MB95 [details] [associations]
            symbol:CUGBP1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
            [GO:0042835 "BRE binding" evidence=IEA] [GO:0040018 "positive
            regulation of multicellular organism growth" evidence=IEA]
            [GO:0031369 "translation initiation factor binding" evidence=IEA]
            [GO:0007286 "spermatid development" evidence=IEA] [GO:0006376 "mRNA
            splice site selection" evidence=IEA] [GO:0003729 "mRNA binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484 HOVERGEN:HBG107646
            KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
            OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
            GeneTree:ENSGT00560000076837 OMA:PTLYNQS EMBL:DAAA02041602
            EMBL:DAAA02041603 EMBL:DAAA02041604 EMBL:BC151433 IPI:IPI00824850
            RefSeq:NP_001094682.1 UniGene:Bt.16531 SMR:A7MB95 STRING:A7MB95
            Ensembl:ENSBTAT00000003274 GeneID:540475 KEGG:bta:540475
            InParanoid:A7MB95 NextBio:20878658 Uniprot:A7MB95
        Length = 486

 Score = 191 (72.3 bits), Expect = 4.1e-16, Sum P(2) = 4.1e-16
 Identities = 56/190 (29%), Positives = 103/190 (54%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFAKKAI 165
             ++F+G +P+  SE+DLR+L E  G V+E+ +++D+     +SKG  FV+F +++ A +A 
Sbjct:    17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76

Query:   166 DELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
             + LH+ K L G      ++ + SE  N     +LFIG + K  TE++ R +    G  +E
Sbjct:    77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ-IE 135

Query:   216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADPKSTP 273
                +++ P   SR  G +FV +   A A  + + M  A   ++G ++P  + +AD +   
Sbjct:   136 ECRILRGPDGLSR--GCAFVTFTTRAMAQTAIKAMHQAQ-TMEGCSSPMVVKFADTQKDK 192

Query:   274 DHSAAASQVK 283
             +    A Q++
Sbjct:   193 EQKRMAQQLQ 202

 Score = 153 (58.9 bits), Expect = 7.0e-08, P = 7.0e-08
 Identities = 48/183 (26%), Positives = 86/183 (46%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
             ++F+G VP+ W+E + R++ E  G  V  I +++D  QNP +++G  FV +Y    A   
Sbjct:    17 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 74

Query:   247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
              Q  L+ N K L G    I    P  +  ++A     + L++  I    +   I+ +F  
Sbjct:    75 AQNALH-NMKVLPGMHHPIQMK-PADSEKNNAVED--RKLFIGMISKKCTENDIRVMFSS 130

Query:   306 HGEVTKVVMPPGKSG-KRDFGFIHYAERS---SALKAVKDTEKYEIDGQVLEVVLAKPQT 361
              G++ +  +  G  G  R   F+ +  R+   +A+KA+   +  E     + V  A  Q 
Sbjct:   131 FGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQK 190

Query:   362 DKK 364
             DK+
Sbjct:   191 DKE 193

 Score = 127 (49.8 bits), Expect = 5.4e-05, P = 5.4e-05
 Identities = 26/84 (30%), Positives = 48/84 (57%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P G+ +FI  LP++  ++DL  +  P G+V   ++  DK++  SK F FVS+ +   A+ 
Sbjct:   398 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQA 457

Query:   164 AIDELHSKELKGKTIRCSLSETKN 187
             AI  ++  ++  K ++  L  +KN
Sbjct:   458 AIQSMNGFQIGMKRLKVQLKRSKN 481

 Score = 79 (32.9 bits), Expect = 4.1e-16, Sum P(2) = 4.1e-16
 Identities = 20/82 (24%), Positives = 40/82 (48%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
             L++ ++P     + + ++F   G V   KV +    +  + FGF+ Y    SA  A++  
Sbjct:   403 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 462

Query:   343 EKYEIDGQVLEVVLAKPQTDKK 364
               ++I  + L+V L + + D K
Sbjct:   463 NGFQIGMKRLKVQLKRSKNDSK 484


>UNIPROTKB|Q92879 [details] [associations]
            symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0007286 "spermatid development" evidence=IEA] [GO:0031369
            "translation initiation factor binding" evidence=IEA] [GO:0040018
            "positive regulation of multicellular organism growth"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
            "mRNA splice site selection" evidence=ISS] [GO:0005634 "nucleus"
            evidence=NAS] [GO:0042835 "BRE binding" evidence=IDA] [GO:0016246
            "RNA interference" evidence=NAS] [GO:0007281 "germ cell
            development" evidence=NAS] [GO:0009790 "embryo development"
            evidence=NAS] [GO:0030529 "ribonucleoprotein complex" evidence=NAS]
            [GO:0000900 "translation repressor activity, nucleic acid binding"
            evidence=NAS] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0043484 "regulation of RNA
            splicing" evidence=IDA] [GO:0006397 "mRNA processing" evidence=TAS]
            [GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 EMBL:CH471064 GO:GO:0016246
            GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0040018 GO:GO:0003676 GO:GO:0009790 GO:GO:0030529
            GO:GO:0007281 GO:GO:0043484 GO:GO:0000900 HOVERGEN:HBG107646
            KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
            OrthoDB:EOG4N8R4X EMBL:U63289 EMBL:AF248648 EMBL:AF267533
            EMBL:AF267534 EMBL:AJ007988 EMBL:AK304430 EMBL:AB210019
            EMBL:AC090559 EMBL:BC031079 IPI:IPI00034015 IPI:IPI00218388
            IPI:IPI00218389 IPI:IPI00853009 IPI:IPI00956101
            RefSeq:NP_001020767.1 RefSeq:NP_001166110.1 RefSeq:NP_001166111.1
            RefSeq:NP_006551.1 RefSeq:NP_941989.1 UniGene:Hs.595333 PDB:2CPZ
            PDB:2DHS PDB:2RQ4 PDB:2RQC PDB:3NMR PDB:3NNA PDB:3NNC PDB:3NNH
            PDBsum:2CPZ PDBsum:2DHS PDBsum:2RQ4 PDBsum:2RQC PDBsum:3NMR
            PDBsum:3NNA PDBsum:3NNC PDBsum:3NNH ProteinModelPortal:Q92879
            SMR:Q92879 IntAct:Q92879 MINT:MINT-1382906 STRING:Q92879
            PhosphoSite:Q92879 DMDM:17374605 PaxDb:Q92879 PRIDE:Q92879
            DNASU:10658 Ensembl:ENST00000310513 Ensembl:ENST00000358597
            Ensembl:ENST00000361904 Ensembl:ENST00000395290
            Ensembl:ENST00000395292 Ensembl:ENST00000532048 GeneID:10658
            KEGG:hsa:10658 UCSC:uc001nfk.2 UCSC:uc001nfl.3 UCSC:uc001nfm.3
            UCSC:uc001nfn.3 GeneCards:GC11M047602 HGNC:HGNC:2549 HPA:CAB016114
            MIM:601074 neXtProt:NX_Q92879 PharmGKB:PA27045 InParanoid:Q92879
            PhylomeDB:Q92879 ChiTaRS:CELF1 EvolutionaryTrace:Q92879
            GenomeRNAi:10658 NextBio:40521 ArrayExpress:Q92879 Bgee:Q92879
            CleanEx:HS_CUGBP1 Genevestigator:Q92879 GermOnline:ENSG00000149187
            GO:GO:0042835 GO:GO:0006376 Uniprot:Q92879
        Length = 486

 Score = 191 (72.3 bits), Expect = 4.1e-16, Sum P(2) = 4.1e-16
 Identities = 56/190 (29%), Positives = 103/190 (54%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFAKKAI 165
             ++F+G +P+  SE+DLR+L E  G V+E+ +++D+     +SKG  FV+F +++ A +A 
Sbjct:    17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76

Query:   166 DELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
             + LH+ K L G      ++ + SE  N     +LFIG + K  TE++ R +    G  +E
Sbjct:    77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ-IE 135

Query:   216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADPKSTP 273
                +++ P   SR  G +FV +   A A  + + M  A   ++G ++P  + +AD +   
Sbjct:   136 ECRILRGPDGLSR--GCAFVTFTTRAMAQTAIKAMHQAQ-TMEGCSSPMVVKFADTQKDK 192

Query:   274 DHSAAASQVK 283
             +    A Q++
Sbjct:   193 EQKRMAQQLQ 202

 Score = 153 (58.9 bits), Expect = 7.0e-08, P = 7.0e-08
 Identities = 48/183 (26%), Positives = 86/183 (46%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
             ++F+G VP+ W+E + R++ E  G  V  I +++D  QNP +++G  FV +Y    A   
Sbjct:    17 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 74

Query:   247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
              Q  L+ N K L G    I    P  +  ++A     + L++  I    +   I+ +F  
Sbjct:    75 AQNALH-NMKVLPGMHHPIQMK-PADSEKNNAVED--RKLFIGMISKKCTENDIRVMFSS 130

Query:   306 HGEVTKVVMPPGKSG-KRDFGFIHYAERS---SALKAVKDTEKYEIDGQVLEVVLAKPQT 361
              G++ +  +  G  G  R   F+ +  R+   +A+KA+   +  E     + V  A  Q 
Sbjct:   131 FGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQK 190

Query:   362 DKK 364
             DK+
Sbjct:   191 DKE 193

 Score = 127 (49.8 bits), Expect = 5.4e-05, P = 5.4e-05
 Identities = 26/84 (30%), Positives = 48/84 (57%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P G+ +FI  LP++  ++DL  +  P G+V   ++  DK++  SK F FVS+ +   A+ 
Sbjct:   398 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQA 457

Query:   164 AIDELHSKELKGKTIRCSLSETKN 187
             AI  ++  ++  K ++  L  +KN
Sbjct:   458 AIQSMNGFQIGMKRLKVQLKRSKN 481

 Score = 79 (32.9 bits), Expect = 4.1e-16, Sum P(2) = 4.1e-16
 Identities = 20/82 (24%), Positives = 40/82 (48%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
             L++ ++P     + + ++F   G V   KV +    +  + FGF+ Y    SA  A++  
Sbjct:   403 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 462

Query:   343 EKYEIDGQVLEVVLAKPQTDKK 364
               ++I  + L+V L + + D K
Sbjct:   463 NGFQIGMKRLKVQLKRSKNDSK 484


>UNIPROTKB|E2R8F6 [details] [associations]
            symbol:CELF1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0043484 "regulation of RNA splicing"
            evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0040018
            "positive regulation of multicellular organism growth"
            evidence=IEA] [GO:0031369 "translation initiation factor binding"
            evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
            [GO:0006376 "mRNA splice site selection" evidence=IEA] [GO:0003729
            "mRNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0007286 GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
            GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
            OMA:PTLYNQS EMBL:AAEX03011483 ProteinModelPortal:E2R8F6
            Ensembl:ENSCAFT00000013438 Uniprot:E2R8F6
        Length = 513

 Score = 191 (72.3 bits), Expect = 5.1e-16, Sum P(2) = 5.1e-16
 Identities = 56/190 (29%), Positives = 103/190 (54%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFAKKAI 165
             ++F+G +P+  SE+DLR+L E  G V+E+ +++D+     +SKG  FV+F +++ A +A 
Sbjct:    44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103

Query:   166 DELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
             + LH+ K L G      ++ + SE  N     +LFIG + K  TE++ R +    G  +E
Sbjct:   104 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ-IE 162

Query:   216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADPKSTP 273
                +++ P   SR  G +FV +   A A  + + M  A   ++G ++P  + +AD +   
Sbjct:   163 ECRILRGPDGLSR--GCAFVTFTTRAMAQTAIKAMHQAQ-TMEGCSSPMVVKFADTQKDK 219

Query:   274 DHSAAASQVK 283
             +    A Q++
Sbjct:   220 EQKRMAQQLQ 229

 Score = 153 (58.9 bits), Expect = 7.7e-08, P = 7.7e-08
 Identities = 48/183 (26%), Positives = 86/183 (46%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
             ++F+G VP+ W+E + R++ E  G  V  I +++D  QNP +++G  FV +Y    A   
Sbjct:    44 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 101

Query:   247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
              Q  L+ N K L G    I    P  +  ++A     + L++  I    +   I+ +F  
Sbjct:   102 AQNALH-NMKVLPGMHHPIQMK-PADSEKNNAVED--RKLFIGMISKKCTENDIRVMFSS 157

Query:   306 HGEVTKVVMPPGKSG-KRDFGFIHYAERS---SALKAVKDTEKYEIDGQVLEVVLAKPQT 361
              G++ +  +  G  G  R   F+ +  R+   +A+KA+   +  E     + V  A  Q 
Sbjct:   158 FGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQK 217

Query:   362 DKK 364
             DK+
Sbjct:   218 DKE 220

 Score = 127 (49.8 bits), Expect = 5.8e-05, P = 5.8e-05
 Identities = 26/84 (30%), Positives = 48/84 (57%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P G+ +FI  LP++  ++DL  +  P G+V   ++  DK++  SK F FVS+ +   A+ 
Sbjct:   425 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQA 484

Query:   164 AIDELHSKELKGKTIRCSLSETKN 187
             AI  ++  ++  K ++  L  +KN
Sbjct:   485 AIQSMNGFQIGMKRLKVQLKRSKN 508

 Score = 79 (32.9 bits), Expect = 5.1e-16, Sum P(2) = 5.1e-16
 Identities = 20/82 (24%), Positives = 40/82 (48%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
             L++ ++P     + + ++F   G V   KV +    +  + FGF+ Y    SA  A++  
Sbjct:   430 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 489

Query:   343 EKYEIDGQVLEVVLAKPQTDKK 364
               ++I  + L+V L + + D K
Sbjct:   490 NGFQIGMKRLKVQLKRSKNDSK 511


>UNIPROTKB|G5EA30 [details] [associations]
            symbol:CELF1 "CUG triplet repeat, RNA binding protein 1,
            isoform CRA_c" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 EMBL:CH471064 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC090559 UniGene:Hs.595333
            HGNC:HGNC:2549 ChiTaRS:CELF1 OMA:PTLYNQS ProteinModelPortal:G5EA30
            SMR:G5EA30 PRIDE:G5EA30 Ensembl:ENST00000531165 ArrayExpress:G5EA30
            Bgee:G5EA30 Uniprot:G5EA30
        Length = 514

 Score = 191 (72.3 bits), Expect = 5.1e-16, Sum P(2) = 5.1e-16
 Identities = 56/190 (29%), Positives = 103/190 (54%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFAKKAI 165
             ++F+G +P+  SE+DLR+L E  G V+E+ +++D+     +SKG  FV+F +++ A +A 
Sbjct:    44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103

Query:   166 DELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
             + LH+ K L G      ++ + SE  N     +LFIG + K  TE++ R +    G  +E
Sbjct:   104 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ-IE 162

Query:   216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADPKSTP 273
                +++ P   SR  G +FV +   A A  + + M  A   ++G ++P  + +AD +   
Sbjct:   163 ECRILRGPDGLSR--GCAFVTFTTRAMAQTAIKAMHQAQ-TMEGCSSPMVVKFADTQKDK 219

Query:   274 DHSAAASQVK 283
             +    A Q++
Sbjct:   220 EQKRMAQQLQ 229

 Score = 153 (58.9 bits), Expect = 7.8e-08, P = 7.8e-08
 Identities = 48/183 (26%), Positives = 86/183 (46%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
             ++F+G VP+ W+E + R++ E  G  V  I +++D  QNP +++G  FV +Y    A   
Sbjct:    44 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 101

Query:   247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
              Q  L+ N K L G    I    P  +  ++A     + L++  I    +   I+ +F  
Sbjct:   102 AQNALH-NMKVLPGMHHPIQMK-PADSEKNNAVED--RKLFIGMISKKCTENDIRVMFSS 157

Query:   306 HGEVTKVVMPPGKSG-KRDFGFIHYAERS---SALKAVKDTEKYEIDGQVLEVVLAKPQT 361
              G++ +  +  G  G  R   F+ +  R+   +A+KA+   +  E     + V  A  Q 
Sbjct:   158 FGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQK 217

Query:   362 DKK 364
             DK+
Sbjct:   218 DKE 220

 Score = 127 (49.8 bits), Expect = 5.8e-05, P = 5.8e-05
 Identities = 26/84 (30%), Positives = 48/84 (57%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P G+ +FI  LP++  ++DL  +  P G+V   ++  DK++  SK F FVS+ +   A+ 
Sbjct:   426 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQA 485

Query:   164 AIDELHSKELKGKTIRCSLSETKN 187
             AI  ++  ++  K ++  L  +KN
Sbjct:   486 AIQSMNGFQIGMKRLKVQLKRSKN 509

 Score = 79 (32.9 bits), Expect = 5.1e-16, Sum P(2) = 5.1e-16
 Identities = 20/82 (24%), Positives = 40/82 (48%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
             L++ ++P     + + ++F   G V   KV +    +  + FGF+ Y    SA  A++  
Sbjct:   431 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 490

Query:   343 EKYEIDGQVLEVVLAKPQTDKK 364
               ++I  + L+V L + + D K
Sbjct:   491 NGFQIGMKRLKVQLKRSKNDSK 512


>UNIPROTKB|F1NZY6 [details] [associations]
            symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 GeneTree:ENSGT00560000076837 EMBL:AADN02039408
            EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
            EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
            EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
            EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
            EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
            EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
            EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
            EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
            EMBL:AADN02039433 IPI:IPI00971429 Ensembl:ENSGALT00000010859
            ArrayExpress:F1NZY6 Uniprot:F1NZY6
        Length = 484

 Score = 187 (70.9 bits), Expect = 5.7e-16, Sum P(2) = 5.7e-16
 Identities = 57/207 (27%), Positives = 112/207 (54%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFA 161
             P+  ++F+G +P+  SE++L++L EP G V+++ +++D+     +SKG  FV+F +++ A
Sbjct:    13 PDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 72

Query:   162 KKAIDELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVG 211
              +A + LH+ K L G      ++ + SE  N     +LFIG V K   E++ R +    G
Sbjct:    73 LEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFG 132

Query:   212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADP 269
               +E   +++ P   SR  G +FV +   A A  +  K ++ +  ++G ++P  + +AD 
Sbjct:   133 Q-IEECRILRGPDGLSR--GCAFVTFSTRAMAQ-NAIKAMHQSQTMEGCSSPIVVKFADT 188

Query:   270 KSTPDHSAAASQVKALYVKNIPDNTST 296
             +   +      Q+ A  ++ +  NT+T
Sbjct:   189 QKDKEQRRLQQQL-AQQMQQL--NTAT 212

 Score = 153 (58.9 bits), Expect = 7.0e-08, P = 7.0e-08
 Identities = 46/183 (25%), Positives = 88/183 (48%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
             ++F+G +P++W+E E +++ E  G  V  I +++D  QNP +++G  FV +Y    A   
Sbjct:    17 KMFVGQIPRSWSEKELKELFEPYG-AVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 74

Query:   247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
              Q  L+ N K L G    I     K      + A + + L++  +    +   I+ +F  
Sbjct:    75 AQNALH-NIKTLPGMHHPIQM---KPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSP 130

Query:   306 HGEVTKVVMPPGKSG-KRDFGFIHYAERS---SALKAVKDTEKYEIDGQVLEVVLAKPQT 361
              G++ +  +  G  G  R   F+ ++ R+   +A+KA+  ++  E     + V  A  Q 
Sbjct:   131 FGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQK 190

Query:   362 DKK 364
             DK+
Sbjct:   191 DKE 193

 Score = 125 (49.1 bits), Expect = 8.9e-05, P = 8.9e-05
 Identities = 25/84 (29%), Positives = 48/84 (57%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P G+ +FI  LP++  ++D+  +  P G+V   ++  DK++  SK F FVS+ +   A+ 
Sbjct:   396 PEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQA 455

Query:   164 AIDELHSKELKGKTIRCSLSETKN 187
             AI  ++  ++  K ++  L  +KN
Sbjct:   456 AIQAMNGFQIGMKRLKVQLKRSKN 479

 Score = 82 (33.9 bits), Expect = 5.7e-16, Sum P(2) = 5.7e-16
 Identities = 26/96 (27%), Positives = 46/96 (47%)

Query:   276 SAAASQVKA-----LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIH 328
             SAA SQ +      L++ ++P     + I ++F   G V   KV +    +  + FGF+ 
Sbjct:   387 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 446

Query:   329 YAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364
             Y    SA  A++    ++I  + L+V L + + D K
Sbjct:   447 YDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSK 482


>DICTYBASE|DDB_G0279539 [details] [associations]
            symbol:DDB_G0279539 "RNA-binding region RNP-1
            domain-containing protein" species:44689 "Dictyostelium discoideum"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            dictyBase:DDB_G0279539 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 EMBL:AAFI02000031 eggNOG:COG1404
            RefSeq:XP_001732991.1 ProteinModelPortal:B0G128
            EnsemblProtists:DDB0234241 GeneID:8622096 KEGG:ddi:DDB_G0279539
            OMA:MSKDEND Uniprot:B0G128
        Length = 373

 Score = 221 (82.9 bits), Expect = 5.8e-16, P = 5.8e-16
 Identities = 79/296 (26%), Positives = 139/296 (46%)

Query:   109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE- 167
             VF+  + +  ++E L++    IGDV E  ++K+K SGE+KG+ FV F     A+ AI+  
Sbjct:    12 VFVSDIARGVTDEQLKEEFSKIGDVLEAVVVKNKHSGETKGYGFVKFYHMADAQHAIETP 71

Query:   168 ---LHSKELKGKT--IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
                L    + GK   ++ +L+++KN L+IG++PK  TE E R  +E++G  + T++  + 
Sbjct:    72 NPPLFKDGITGKPQMVKVTLADSKNTLYIGHIPKGLTEKEVRAELEEIG--MCTLKSFEF 129

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQV 282
                PS+  G++          D+  +  + A   +  +  T S    K + D   + +  
Sbjct:   130 -DGPSKLYGYA-------QFKDH--ETTIKAIKSIQKSKYTASLTPSKRSNDDGKSPT-T 178

Query:   283 KALYVKNIPDNTSTEKIKELFQRHGE-VTKVVMPPGKSGKRDFG--FIHYAERSSALKAV 339
             K L+V+ I      E +++  Q   E + K+V+P     K   G  FI Y   +S  K +
Sbjct:   179 KVLFVRGIRSQDEGELLRK--QLGPELIEKIVVPLDSQKKTPLGHAFI-YCNSTSDAKII 235

Query:   340 KD-TEKYEIDGQVLEVVLAKPQTDKKTEGTFPYS-PGLVPTHLPHAGYGGFAGTPY 393
              D    ++  GQ L +    P+  K  +G F  + P   P +  H  + G     Y
Sbjct:   236 MDHNHDFDFMGQKLTISWGLPKQRKMMDGYFAANTPLAAPPYDYHYYFPGSVPQDY 291

 Score = 117 (46.2 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
 Identities = 55/205 (26%), Positives = 87/205 (42%)

Query:    74 DTPH-VEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGD 132
             D  H +E    P    G   K +  ++  L  + + ++IG +PK  +E+++R   E IG 
Sbjct:    63 DAQHAIETPNPPLFKDGITGKPQMVKV-TLADSKNTLYIGHIPKGLTEKEVRAELEEIG- 120

Query:   133 VFEVRLMKDKE-SGESKGFAFVSFRSKEFAKKAIDELH-SKELKGKTI--RCS---LSET 185
                +  +K  E  G SK + +  F+  E   KAI  +  SK     T   R +    S T
Sbjct:   121 ---MCTLKSFEFDGPSKLYGYAQFKDHETTIKAIKSIQKSKYTASLTPSKRSNDDGKSPT 177

Query:   186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADY 245
                LF+  +    ++DE   + + +GP  E IE I  P +  +         Y N+ +D 
Sbjct:   178 TKVLFVRGIR---SQDEGELLRKQLGP--ELIEKIVVPLDSQKKTPLGHAFIYCNSTSDA 232

Query:   246 SRQKMLNANFKLDGNTPTISWADPK 270
                   N +F   G   TISW  PK
Sbjct:   233 KIIMDHNHDFDFMGQKLTISWGLPK 257

 Score = 49 (22.3 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
 Identities = 13/31 (41%), Positives = 15/31 (48%)

Query:   362 DKKTEGTFPYSPGLVPTHLPHAGYGGFAGTP 392
             D K E   PY P + PT  P+A Y  F   P
Sbjct:   321 DHKKEMYHPY-PMVTPTTNPYAKYDTFGYPP 350


>UNIPROTKB|E1C045 [details] [associations]
            symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0006376 "mRNA splice site selection"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006376
            GeneTree:ENSGT00560000076837 IPI:IPI00587312 EMBL:AADN02039408
            EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
            EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
            EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
            EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
            EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
            EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
            EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
            EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
            EMBL:AADN02039433 ProteinModelPortal:E1C045
            Ensembl:ENSGALT00000010858 ArrayExpress:E1C045 Uniprot:E1C045
        Length = 488

 Score = 187 (70.9 bits), Expect = 5.9e-16, Sum P(2) = 5.9e-16
 Identities = 57/207 (27%), Positives = 112/207 (54%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFA 161
             P+  ++F+G +P+  SE++L++L EP G V+++ +++D+     +SKG  FV+F +++ A
Sbjct:    13 PDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 72

Query:   162 KKAIDELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVG 211
              +A + LH+ K L G      ++ + SE  N     +LFIG V K   E++ R +    G
Sbjct:    73 LEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFG 132

Query:   212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADP 269
               +E   +++ P   SR  G +FV +   A A  +  K ++ +  ++G ++P  + +AD 
Sbjct:   133 Q-IEECRILRGPDGLSR--GCAFVTFSTRAMAQ-NAIKAMHQSQTMEGCSSPIVVKFADT 188

Query:   270 KSTPDHSAAASQVKALYVKNIPDNTST 296
             +   +      Q+ A  ++ +  NT+T
Sbjct:   189 QKDKEQRRLQQQL-AQQMQQL--NTAT 212

 Score = 153 (58.9 bits), Expect = 7.1e-08, P = 7.1e-08
 Identities = 46/183 (25%), Positives = 88/183 (48%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
             ++F+G +P++W+E E +++ E  G  V  I +++D  QNP +++G  FV +Y    A   
Sbjct:    17 KMFVGQIPRSWSEKELKELFEPYG-AVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 74

Query:   247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
              Q  L+ N K L G    I     K      + A + + L++  +    +   I+ +F  
Sbjct:    75 AQNALH-NIKTLPGMHHPIQM---KPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSP 130

Query:   306 HGEVTKVVMPPGKSG-KRDFGFIHYAERS---SALKAVKDTEKYEIDGQVLEVVLAKPQT 361
              G++ +  +  G  G  R   F+ ++ R+   +A+KA+  ++  E     + V  A  Q 
Sbjct:   131 FGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQK 190

Query:   362 DKK 364
             DK+
Sbjct:   191 DKE 193

 Score = 125 (49.1 bits), Expect = 9.0e-05, P = 9.0e-05
 Identities = 25/84 (29%), Positives = 48/84 (57%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P G+ +FI  LP++  ++D+  +  P G+V   ++  DK++  SK F FVS+ +   A+ 
Sbjct:   400 PEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQA 459

Query:   164 AIDELHSKELKGKTIRCSLSETKN 187
             AI  ++  ++  K ++  L  +KN
Sbjct:   460 AIQAMNGFQIGMKRLKVQLKRSKN 483

 Score = 82 (33.9 bits), Expect = 5.9e-16, Sum P(2) = 5.9e-16
 Identities = 26/96 (27%), Positives = 46/96 (47%)

Query:   276 SAAASQVKA-----LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIH 328
             SAA SQ +      L++ ++P     + I ++F   G V   KV +    +  + FGF+ 
Sbjct:   391 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 450

Query:   329 YAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364
             Y    SA  A++    ++I  + L+V L + + D K
Sbjct:   451 YDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSK 486


>UNIPROTKB|F1P674 [details] [associations]
            symbol:CELF2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 KO:K13207 GeneTree:ENSGT00560000076837 CTD:10659
            OMA:TMRNEEL EMBL:AAEX03001288 EMBL:AAEX03001289 EMBL:AAEX03001290
            RefSeq:XP_003433765.1 ProteinModelPortal:F1P674
            Ensembl:ENSCAFT00000008021 GeneID:607310 KEGG:cfa:607310
            Uniprot:F1P674
        Length = 488

 Score = 187 (70.9 bits), Expect = 5.9e-16, Sum P(2) = 5.9e-16
 Identities = 57/207 (27%), Positives = 112/207 (54%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFA 161
             P+  ++F+G +P+  SE++L++L EP G V+++ +++D+     +SKG  FV+F +++ A
Sbjct:    13 PDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 72

Query:   162 KKAIDELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVG 211
              +A + LH+ K L G      ++ + SE  N     +LFIG V K   E++ R +    G
Sbjct:    73 LEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFG 132

Query:   212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADP 269
               +E   +++ P   SR  G +FV +   A A  +  K ++ +  ++G ++P  + +AD 
Sbjct:   133 Q-IEECRILRGPDGLSR--GCAFVTFSTRAMAQ-NAIKAMHQSQTMEGCSSPIVVKFADT 188

Query:   270 KSTPDHSAAASQVKALYVKNIPDNTST 296
             +   +      Q+ A  ++ +  NT+T
Sbjct:   189 QKDKEQRRLQQQL-AQQMQQL--NTAT 212

 Score = 153 (58.9 bits), Expect = 7.1e-08, P = 7.1e-08
 Identities = 46/183 (25%), Positives = 88/183 (48%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
             ++F+G +P++W+E E +++ E  G  V  I +++D  QNP +++G  FV +Y    A   
Sbjct:    17 KMFVGQIPRSWSEKELKELFEPYG-AVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 74

Query:   247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
              Q  L+ N K L G    I     K      + A + + L++  +    +   I+ +F  
Sbjct:    75 AQNALH-NIKTLPGMHHPIQM---KPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSP 130

Query:   306 HGEVTKVVMPPGKSG-KRDFGFIHYAERS---SALKAVKDTEKYEIDGQVLEVVLAKPQT 361
              G++ +  +  G  G  R   F+ ++ R+   +A+KA+  ++  E     + V  A  Q 
Sbjct:   131 FGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQK 190

Query:   362 DKK 364
             DK+
Sbjct:   191 DKE 193

 Score = 125 (49.1 bits), Expect = 9.0e-05, P = 9.0e-05
 Identities = 25/84 (29%), Positives = 48/84 (57%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P G+ +FI  LP++  ++D+  +  P G+V   ++  DK++  SK F FVS+ +   A+ 
Sbjct:   400 PEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQA 459

Query:   164 AIDELHSKELKGKTIRCSLSETKN 187
             AI  ++  ++  K ++  L  +KN
Sbjct:   460 AIQAMNGFQIGMKRLKVQLKRSKN 483

 Score = 82 (33.9 bits), Expect = 5.9e-16, Sum P(2) = 5.9e-16
 Identities = 26/96 (27%), Positives = 46/96 (47%)

Query:   276 SAAASQVKA-----LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIH 328
             SAA SQ +      L++ ++P     + I ++F   G V   KV +    +  + FGF+ 
Sbjct:   391 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 450

Query:   329 YAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364
             Y    SA  A++    ++I  + L+V L + + D K
Sbjct:   451 YDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSK 486


>UNIPROTKB|F1P017 [details] [associations]
            symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0006376 "mRNA splice site selection"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006376
            GeneTree:ENSGT00560000076837 OMA:TMRNEEL EMBL:AADN02039408
            EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
            EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
            EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
            EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
            EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
            EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
            EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
            EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
            EMBL:AADN02039433 IPI:IPI00820413 Ensembl:ENSGALT00000040039
            ArrayExpress:F1P017 Uniprot:F1P017
        Length = 494

 Score = 187 (70.9 bits), Expect = 6.2e-16, Sum P(2) = 6.2e-16
 Identities = 57/207 (27%), Positives = 112/207 (54%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFA 161
             P+  ++F+G +P+  SE++L++L EP G V+++ +++D+     +SKG  FV+F +++ A
Sbjct:    19 PDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 78

Query:   162 KKAIDELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVG 211
              +A + LH+ K L G      ++ + SE  N     +LFIG V K   E++ R +    G
Sbjct:    79 LEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFG 138

Query:   212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADP 269
               +E   +++ P   SR  G +FV +   A A  +  K ++ +  ++G ++P  + +AD 
Sbjct:   139 Q-IEECRILRGPDGLSR--GCAFVTFSTRAMAQ-NAIKAMHQSQTMEGCSSPIVVKFADT 194

Query:   270 KSTPDHSAAASQVKALYVKNIPDNTST 296
             +   +      Q+ A  ++ +  NT+T
Sbjct:   195 QKDKEQRRLQQQL-AQQMQQL--NTAT 218

 Score = 153 (58.9 bits), Expect = 7.2e-08, P = 7.2e-08
 Identities = 46/183 (25%), Positives = 88/183 (48%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
             ++F+G +P++W+E E +++ E  G  V  I +++D  QNP +++G  FV +Y    A   
Sbjct:    23 KMFVGQIPRSWSEKELKELFEPYG-AVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 80

Query:   247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
              Q  L+ N K L G    I     K      + A + + L++  +    +   I+ +F  
Sbjct:    81 AQNALH-NIKTLPGMHHPIQM---KPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSP 136

Query:   306 HGEVTKVVMPPGKSG-KRDFGFIHYAERS---SALKAVKDTEKYEIDGQVLEVVLAKPQT 361
              G++ +  +  G  G  R   F+ ++ R+   +A+KA+  ++  E     + V  A  Q 
Sbjct:   137 FGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQK 196

Query:   362 DKK 364
             DK+
Sbjct:   197 DKE 199

 Score = 125 (49.1 bits), Expect = 9.2e-05, P = 9.2e-05
 Identities = 25/84 (29%), Positives = 48/84 (57%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P G+ +FI  LP++  ++D+  +  P G+V   ++  DK++  SK F FVS+ +   A+ 
Sbjct:   406 PEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQA 465

Query:   164 AIDELHSKELKGKTIRCSLSETKN 187
             AI  ++  ++  K ++  L  +KN
Sbjct:   466 AIQAMNGFQIGMKRLKVQLKRSKN 489

 Score = 82 (33.9 bits), Expect = 6.2e-16, Sum P(2) = 6.2e-16
 Identities = 26/96 (27%), Positives = 46/96 (47%)

Query:   276 SAAASQVKA-----LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIH 328
             SAA SQ +      L++ ++P     + I ++F   G V   KV +    +  + FGF+ 
Sbjct:   397 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 456

Query:   329 YAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364
             Y    SA  A++    ++I  + L+V L + + D K
Sbjct:   457 YDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSK 492


>UNIPROTKB|Q5VZZ6 [details] [associations]
            symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 EMBL:AC026887 HOVERGEN:HBG107646 HOGENOM:HOG000004754
            EMBL:AL157704 EMBL:AL136320 IPI:IPI00845480 UniGene:Hs.309288
            HGNC:HGNC:2550 EMBL:AL136369 EMBL:AL138769 EMBL:AL162408 SMR:Q5VZZ6
            Ensembl:ENST00000354897 Uniprot:Q5VZZ6
        Length = 498

 Score = 187 (70.9 bits), Expect = 6.4e-16, Sum P(2) = 6.4e-16
 Identities = 57/207 (27%), Positives = 112/207 (54%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFA 161
             P+  ++F+G +P+  SE++L++L EP G V+++ +++D+     +SKG  FV+F +++ A
Sbjct:    13 PDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 72

Query:   162 KKAIDELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVG 211
              +A + LH+ K L G      ++ + SE  N     +LFIG V K   E++ R +    G
Sbjct:    73 LEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFG 132

Query:   212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADP 269
               +E   +++ P   SR  G +FV +   A A  +  K ++ +  ++G ++P  + +AD 
Sbjct:   133 Q-IEECRILRGPDGLSR--GCAFVTFSTRAMAQ-NAIKAMHQSQTMEGCSSPIVVKFADT 188

Query:   270 KSTPDHSAAASQVKALYVKNIPDNTST 296
             +   +      Q+ A  ++ +  NT+T
Sbjct:   189 QKDKEQRRLQQQL-AQQMQQL--NTAT 212

 Score = 153 (58.9 bits), Expect = 7.3e-08, P = 7.3e-08
 Identities = 46/183 (25%), Positives = 88/183 (48%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
             ++F+G +P++W+E E +++ E  G  V  I +++D  QNP +++G  FV +Y    A   
Sbjct:    17 KMFVGQIPRSWSEKELKELFEPYG-AVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 74

Query:   247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
              Q  L+ N K L G    I     K      + A + + L++  +    +   I+ +F  
Sbjct:    75 AQNALH-NIKTLPGMHHPIQM---KPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSP 130

Query:   306 HGEVTKVVMPPGKSG-KRDFGFIHYAERS---SALKAVKDTEKYEIDGQVLEVVLAKPQT 361
              G++ +  +  G  G  R   F+ ++ R+   +A+KA+  ++  E     + V  A  Q 
Sbjct:   131 FGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQK 190

Query:   362 DKK 364
             DK+
Sbjct:   191 DKE 193

 Score = 125 (49.1 bits), Expect = 9.3e-05, P = 9.3e-05
 Identities = 25/84 (29%), Positives = 48/84 (57%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P G+ +FI  LP++  ++D+  +  P G+V   ++  DK++  SK F FVS+ +   A+ 
Sbjct:   410 PEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQA 469

Query:   164 AIDELHSKELKGKTIRCSLSETKN 187
             AI  ++  ++  K ++  L  +KN
Sbjct:   470 AIQAMNGFQIGMKRLKVQLKRSKN 493

 Score = 82 (33.9 bits), Expect = 6.4e-16, Sum P(2) = 6.4e-16
 Identities = 26/96 (27%), Positives = 46/96 (47%)

Query:   276 SAAASQVKA-----LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIH 328
             SAA SQ +      L++ ++P     + I ++F   G V   KV +    +  + FGF+ 
Sbjct:   401 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 460

Query:   329 YAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364
             Y    SA  A++    ++I  + L+V L + + D K
Sbjct:   461 YDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSK 496


>UNIPROTKB|O95319 [details] [associations]
            symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
            evidence=TAS] [GO:0008016 "regulation of heart contraction"
            evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0008016 GO:GO:0003723
            GO:GO:0006396 EMBL:CH471072 EMBL:AC026887 HSSP:Q92879
            HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 CTD:10659
            EMBL:AF090694 EMBL:AF090693 EMBL:AF036956 EMBL:U69546 EMBL:AF295068
            EMBL:AF295063 EMBL:AF295064 EMBL:AF295065 EMBL:AF295066
            EMBL:AF295067 EMBL:AF314199 EMBL:AF432906 EMBL:AK316354
            EMBL:AL157704 EMBL:AL136320 EMBL:BC036391 IPI:IPI00410277
            IPI:IPI00607544 IPI:IPI00845479 IPI:IPI00845480 IPI:IPI00853320
            RefSeq:NP_001020247.1 RefSeq:NP_001020248.1 RefSeq:NP_001077060.1
            RefSeq:NP_006552.3 UniGene:Hs.309288 ProteinModelPortal:O95319
            SMR:O95319 IntAct:O95319 MINT:MINT-2868664 STRING:O95319
            PhosphoSite:O95319 UCD-2DPAGE:O95319 PaxDb:O95319 PRIDE:O95319
            Ensembl:ENST00000315874 Ensembl:ENST00000354440
            Ensembl:ENST00000379261 Ensembl:ENST00000399850
            Ensembl:ENST00000416382 Ensembl:ENST00000417956
            Ensembl:ENST00000427450 GeneID:10659 KEGG:hsa:10659 UCSC:uc001iki.4
            UCSC:uc001ikk.2 UCSC:uc001iko.4 UCSC:uc001ikp.4 UCSC:uc010qbj.1
            GeneCards:GC10P011049 HGNC:HGNC:2550 MIM:602538 neXtProt:NX_O95319
            PharmGKB:PA27046 ChiTaRS:CELF2 GenomeRNAi:10659 NextBio:40529
            ArrayExpress:O95319 Bgee:O95319 CleanEx:HS_CUGBP2
            Genevestigator:O95319 Uniprot:O95319
        Length = 508

 Score = 187 (70.9 bits), Expect = 7.0e-16, Sum P(2) = 7.0e-16
 Identities = 57/207 (27%), Positives = 112/207 (54%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFA 161
             P+  ++F+G +P+  SE++L++L EP G V+++ +++D+     +SKG  FV+F +++ A
Sbjct:    37 PDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 96

Query:   162 KKAIDELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVG 211
              +A + LH+ K L G      ++ + SE  N     +LFIG V K   E++ R +    G
Sbjct:    97 LEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFG 156

Query:   212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADP 269
               +E   +++ P   SR  G +FV +   A A  +  K ++ +  ++G ++P  + +AD 
Sbjct:   157 Q-IEECRILRGPDGLSR--GCAFVTFSTRAMAQ-NAIKAMHQSQTMEGCSSPIVVKFADT 212

Query:   270 KSTPDHSAAASQVKALYVKNIPDNTST 296
             +   +      Q+ A  ++ +  NT+T
Sbjct:   213 QKDKEQRRLQQQL-AQQMQQL--NTAT 236

 Score = 153 (58.9 bits), Expect = 7.6e-08, P = 7.6e-08
 Identities = 46/183 (25%), Positives = 88/183 (48%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
             ++F+G +P++W+E E +++ E  G  V  I +++D  QNP +++G  FV +Y    A   
Sbjct:    41 KMFVGQIPRSWSEKELKELFEPYG-AVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 98

Query:   247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
              Q  L+ N K L G    I     K      + A + + L++  +    +   I+ +F  
Sbjct:    99 AQNALH-NIKTLPGMHHPIQM---KPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSP 154

Query:   306 HGEVTKVVMPPGKSG-KRDFGFIHYAERS---SALKAVKDTEKYEIDGQVLEVVLAKPQT 361
              G++ +  +  G  G  R   F+ ++ R+   +A+KA+  ++  E     + V  A  Q 
Sbjct:   155 FGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQK 214

Query:   362 DKK 364
             DK+
Sbjct:   215 DKE 217

 Score = 125 (49.1 bits), Expect = 9.5e-05, P = 9.5e-05
 Identities = 25/84 (29%), Positives = 48/84 (57%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P G+ +FI  LP++  ++D+  +  P G+V   ++  DK++  SK F FVS+ +   A+ 
Sbjct:   420 PEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQA 479

Query:   164 AIDELHSKELKGKTIRCSLSETKN 187
             AI  ++  ++  K ++  L  +KN
Sbjct:   480 AIQAMNGFQIGMKRLKVQLKRSKN 503

 Score = 82 (33.9 bits), Expect = 7.0e-16, Sum P(2) = 7.0e-16
 Identities = 26/96 (27%), Positives = 46/96 (47%)

Query:   276 SAAASQVKA-----LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIH 328
             SAA SQ +      L++ ++P     + I ++F   G V   KV +    +  + FGF+ 
Sbjct:   411 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 470

Query:   329 YAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364
             Y    SA  A++    ++I  + L+V L + + D K
Sbjct:   471 YDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSK 506


>MGI|MGI:1338822 [details] [associations]
            symbol:Celf2 "CUGBP, Elav-like family member 2"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
            evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006376
            "mRNA splice site selection" evidence=IDA] [GO:0006397 "mRNA
            processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1338822 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
            HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 GO:GO:0006376
            GeneTree:ENSGT00560000076837 CTD:10659 ChiTaRS:CELF2 EMBL:AF090696
            EMBL:AF090697 EMBL:Y18298 EMBL:AK137292 EMBL:AK151818 EMBL:AK152628
            EMBL:AK153267 EMBL:AK160861 EMBL:AK161349 EMBL:AK164914
            EMBL:AL929240 EMBL:AL845492 EMBL:AL845515 EMBL:BC026856
            IPI:IPI00129146 IPI:IPI00651950 IPI:IPI00750780 IPI:IPI00751703
            IPI:IPI00756899 IPI:IPI00853748 IPI:IPI00853844 IPI:IPI00853921
            IPI:IPI00854018 IPI:IPI00854021 RefSeq:NP_001103698.1
            RefSeq:NP_001103699.1 RefSeq:NP_001103700.1 RefSeq:NP_001103701.1
            RefSeq:NP_001103702.1 RefSeq:NP_001153764.1 RefSeq:NP_001153765.1
            RefSeq:NP_034290.2 UniGene:Mm.398543 ProteinModelPortal:Q9Z0H4
            SMR:Q9Z0H4 STRING:Q9Z0H4 PhosphoSite:Q9Z0H4 PaxDb:Q9Z0H4
            PRIDE:Q9Z0H4 Ensembl:ENSMUST00000002176 Ensembl:ENSMUST00000100429
            Ensembl:ENSMUST00000114924 Ensembl:ENSMUST00000114927
            Ensembl:ENSMUST00000114934 GeneID:14007 KEGG:mmu:14007
            UCSC:uc008ign.1 UCSC:uc008igo.1 UCSC:uc008igp.1 UCSC:uc008igq.2
            UCSC:uc008igs.2 UCSC:uc008igt.2 UCSC:uc008igv.2 InParanoid:Q9Z0H4
            OMA:TMRNEEL NextBio:284908 Bgee:Q9Z0H4 CleanEx:MM_CUGBP2
            Genevestigator:Q9Z0H4 Uniprot:Q9Z0H4
        Length = 508

 Score = 187 (70.9 bits), Expect = 7.0e-16, Sum P(2) = 7.0e-16
 Identities = 57/207 (27%), Positives = 112/207 (54%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFA 161
             P+  ++F+G +P+  SE++L++L EP G V+++ +++D+     +SKG  FV+F +++ A
Sbjct:    37 PDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 96

Query:   162 KKAIDELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVG 211
              +A + LH+ K L G      ++ + SE  N     +LFIG V K   E++ R +    G
Sbjct:    97 LEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFG 156

Query:   212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADP 269
               +E   +++ P   SR  G +FV +   A A  +  K ++ +  ++G ++P  + +AD 
Sbjct:   157 Q-IEECRILRGPDGLSR--GCAFVTFSTRAMAQ-NAIKAMHQSQTMEGCSSPIVVKFADT 212

Query:   270 KSTPDHSAAASQVKALYVKNIPDNTST 296
             +   +      Q+ A  ++ +  NT+T
Sbjct:   213 QKDKEQRRLQQQL-AQQMQQL--NTAT 236

 Score = 153 (58.9 bits), Expect = 7.6e-08, P = 7.6e-08
 Identities = 46/183 (25%), Positives = 88/183 (48%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
             ++F+G +P++W+E E +++ E  G  V  I +++D  QNP +++G  FV +Y    A   
Sbjct:    41 KMFVGQIPRSWSEKELKELFEPYG-AVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 98

Query:   247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
              Q  L+ N K L G    I     K      + A + + L++  +    +   I+ +F  
Sbjct:    99 AQNALH-NIKTLPGMHHPIQM---KPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSP 154

Query:   306 HGEVTKVVMPPGKSG-KRDFGFIHYAERS---SALKAVKDTEKYEIDGQVLEVVLAKPQT 361
              G++ +  +  G  G  R   F+ ++ R+   +A+KA+  ++  E     + V  A  Q 
Sbjct:   155 FGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQK 214

Query:   362 DKK 364
             DK+
Sbjct:   215 DKE 217

 Score = 125 (49.1 bits), Expect = 9.5e-05, P = 9.5e-05
 Identities = 25/84 (29%), Positives = 48/84 (57%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P G+ +FI  LP++  ++D+  +  P G+V   ++  DK++  SK F FVS+ +   A+ 
Sbjct:   420 PEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQA 479

Query:   164 AIDELHSKELKGKTIRCSLSETKN 187
             AI  ++  ++  K ++  L  +KN
Sbjct:   480 AIQAMNGFQIGMKRLKVQLKRSKN 503

 Score = 82 (33.9 bits), Expect = 7.0e-16, Sum P(2) = 7.0e-16
 Identities = 26/96 (27%), Positives = 46/96 (47%)

Query:   276 SAAASQVKA-----LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIH 328
             SAA SQ +      L++ ++P     + I ++F   G V   KV +    +  + FGF+ 
Sbjct:   411 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 470

Query:   329 YAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364
             Y    SA  A++    ++I  + L+V L + + D K
Sbjct:   471 YDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSK 506


>RGD|68347 [details] [associations]
            symbol:Celf2 "CUGBP, Elav-like family member 2" species:10116
           "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
           [GO:0003723 "RNA binding" evidence=IDA] [GO:0005634 "nucleus"
           evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
           [GO:0006376 "mRNA splice site selection" evidence=IEA;ISO]
           InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
           Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360 RGD:68347
           GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
           GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
           eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
           GO:GO:0006376 GeneTree:ENSGT00560000076837 CTD:10659 OMA:TMRNEEL
           EMBL:AF090695 EMBL:AJ010351 EMBL:AJ010386 EMBL:BC129096
           IPI:IPI00212483 IPI:IPI00781372 IPI:IPI00854036 IPI:IPI00854042
           RefSeq:NP_058893.2 UniGene:Rn.162247 ProteinModelPortal:Q792H5
           SMR:Q792H5 STRING:Q792H5 PhosphoSite:Q792H5 PRIDE:Q792H5
           Ensembl:ENSRNOT00000023436 GeneID:29428 KEGG:rno:29428
           InParanoid:Q792H5 NextBio:609142 ArrayExpress:Q792H5
           Genevestigator:Q792H5 Uniprot:Q792H5
        Length = 508

 Score = 187 (70.9 bits), Expect = 7.0e-16, Sum P(2) = 7.0e-16
 Identities = 57/207 (27%), Positives = 112/207 (54%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFA 161
             P+  ++F+G +P+  SE++L++L EP G V+++ +++D+     +SKG  FV+F +++ A
Sbjct:    37 PDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 96

Query:   162 KKAIDELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVG 211
              +A + LH+ K L G      ++ + SE  N     +LFIG V K   E++ R +    G
Sbjct:    97 LEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFG 156

Query:   212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADP 269
               +E   +++ P   SR  G +FV +   A A  +  K ++ +  ++G ++P  + +AD 
Sbjct:   157 Q-IEECRILRGPDGLSR--GCAFVTFSTRAMAQ-NAIKAMHQSQTMEGCSSPIVVKFADT 212

Query:   270 KSTPDHSAAASQVKALYVKNIPDNTST 296
             +   +      Q+ A  ++ +  NT+T
Sbjct:   213 QKDKEQRRLQQQL-AQQMQQL--NTAT 236

 Score = 153 (58.9 bits), Expect = 7.6e-08, P = 7.6e-08
 Identities = 46/183 (25%), Positives = 88/183 (48%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
             ++F+G +P++W+E E +++ E  G  V  I +++D  QNP +++G  FV +Y    A   
Sbjct:    41 KMFVGQIPRSWSEKELKELFEPYG-AVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 98

Query:   247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
              Q  L+ N K L G    I     K      + A + + L++  +    +   I+ +F  
Sbjct:    99 AQNALH-NIKTLPGMHHPIQM---KPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSP 154

Query:   306 HGEVTKVVMPPGKSG-KRDFGFIHYAERS---SALKAVKDTEKYEIDGQVLEVVLAKPQT 361
              G++ +  +  G  G  R   F+ ++ R+   +A+KA+  ++  E     + V  A  Q 
Sbjct:   155 FGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQK 214

Query:   362 DKK 364
             DK+
Sbjct:   215 DKE 217

 Score = 125 (49.1 bits), Expect = 9.5e-05, P = 9.5e-05
 Identities = 25/84 (29%), Positives = 48/84 (57%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P G+ +FI  LP++  ++D+  +  P G+V   ++  DK++  SK F FVS+ +   A+ 
Sbjct:   420 PEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQA 479

Query:   164 AIDELHSKELKGKTIRCSLSETKN 187
             AI  ++  ++  K ++  L  +KN
Sbjct:   480 AIQAMNGFQIGMKRLKVQLKRSKN 503

 Score = 82 (33.9 bits), Expect = 7.0e-16, Sum P(2) = 7.0e-16
 Identities = 26/96 (27%), Positives = 46/96 (47%)

Query:   276 SAAASQVKA-----LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIH 328
             SAA SQ +      L++ ++P     + I ++F   G V   KV +    +  + FGF+ 
Sbjct:   411 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 470

Query:   329 YAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364
             Y    SA  A++    ++I  + L+V L + + D K
Sbjct:   471 YDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSK 506


>UNIPROTKB|Q7T2T1 [details] [associations]
            symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
            KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 EMBL:AY288985
            EMBL:AY288986 IPI:IPI00574339 IPI:IPI00587312 RefSeq:NP_989591.1
            UniGene:Gga.4919 ProteinModelPortal:Q7T2T1 SMR:Q7T2T1 STRING:Q7T2T1
            PRIDE:Q7T2T1 GeneID:374111 KEGG:gga:374111 CTD:10659
            InParanoid:Q7T2T1 NextBio:20813628 Uniprot:Q7T2T1
        Length = 484

 Score = 186 (70.5 bits), Expect = 7.4e-16, Sum P(2) = 7.4e-16
 Identities = 57/207 (27%), Positives = 111/207 (53%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFA 161
             P+  + F+G +P+  SE++L++L EP G V+++ +++D+     +SKG  FV+F +++ A
Sbjct:    13 PDAIKTFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 72

Query:   162 KKAIDELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVG 211
              +A + LH+ K L G      ++ + SE  N     +LFIG V K   E++ R +    G
Sbjct:    73 LEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFG 132

Query:   212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADP 269
               +E   +++ P   SR  G +FV +   A A  +  K ++ +  ++G ++P  + +AD 
Sbjct:   133 Q-IEECRILRGPDGLSR--GCAFVTFSTRAMAQ-NAIKAMHQSQTMEGCSSPIVVKFADT 188

Query:   270 KSTPDHSAAASQVKALYVKNIPDNTST 296
             +   +      Q+ A  ++ +  NT+T
Sbjct:   189 QKDKEQRRLQQQL-AQQMQQL--NTAT 212

 Score = 150 (57.9 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 46/183 (25%), Positives = 87/183 (47%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
             + F+G +P++W+E E +++ E  G  V  I +++D  QNP +++G  FV +Y    A   
Sbjct:    17 KTFVGQIPRSWSEKELKELFEPYG-AVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 74

Query:   247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
              Q  L+ N K L G    I     K      + A + + L++  +    +   I+ +F  
Sbjct:    75 AQNALH-NIKTLPGMHHPIQM---KPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSP 130

Query:   306 HGEVTKVVMPPGKSG-KRDFGFIHYAERS---SALKAVKDTEKYEIDGQVLEVVLAKPQT 361
              G++ +  +  G  G  R   F+ ++ R+   +A+KA+  ++  E     + V  A  Q 
Sbjct:   131 FGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQK 190

Query:   362 DKK 364
             DK+
Sbjct:   191 DKE 193

 Score = 125 (49.1 bits), Expect = 8.9e-05, P = 8.9e-05
 Identities = 25/84 (29%), Positives = 48/84 (57%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P G+ +FI  LP++  ++D+  +  P G+V   ++  DK++  SK F FVS+ +   A+ 
Sbjct:   396 PEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQA 455

Query:   164 AIDELHSKELKGKTIRCSLSETKN 187
             AI  ++  ++  K ++  L  +KN
Sbjct:   456 AIQAMNGFQIGMKRLKVQLKRSKN 479

 Score = 82 (33.9 bits), Expect = 7.4e-16, Sum P(2) = 7.4e-16
 Identities = 26/96 (27%), Positives = 46/96 (47%)

Query:   276 SAAASQVKA-----LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIH 328
             SAA SQ +      L++ ++P     + I ++F   G V   KV +    +  + FGF+ 
Sbjct:   387 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 446

Query:   329 YAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364
             Y    SA  A++    ++I  + L+V L + + D K
Sbjct:   447 YDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSK 482


>UNIPROTKB|E9PC62 [details] [associations]
            symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0006376 "mRNA splice site selection"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC026887 KO:K13207
            GO:GO:0006376 CTD:10659 EMBL:AL157704 EMBL:AL136320 IPI:IPI00845479
            RefSeq:NP_006552.3 UniGene:Hs.309288 GeneID:10659 KEGG:hsa:10659
            HGNC:HGNC:2550 ChiTaRS:CELF2 GenomeRNAi:10659 NextBio:40529
            OMA:TMRNEEL EMBL:AL136369 EMBL:AL138769 EMBL:AL162408 SMR:E9PC62
            Ensembl:ENST00000450189 Ensembl:ENST00000542579 UCSC:uc001ikl.4
            Uniprot:E9PC62
        Length = 521

 Score = 187 (70.9 bits), Expect = 7.7e-16, Sum P(2) = 7.7e-16
 Identities = 57/207 (27%), Positives = 112/207 (54%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFA 161
             P+  ++F+G +P+  SE++L++L EP G V+++ +++D+     +SKG  FV+F +++ A
Sbjct:    44 PDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA 103

Query:   162 KKAIDELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVG 211
              +A + LH+ K L G      ++ + SE  N     +LFIG V K   E++ R +    G
Sbjct:   104 LEAQNALHNIKTLPGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPFG 163

Query:   212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADP 269
               +E   +++ P   SR  G +FV +   A A  +  K ++ +  ++G ++P  + +AD 
Sbjct:   164 Q-IEECRILRGPDGLSR--GCAFVTFSTRAMAQ-NAIKAMHQSQTMEGCSSPIVVKFADT 219

Query:   270 KSTPDHSAAASQVKALYVKNIPDNTST 296
             +   +      Q+ A  ++ +  NT+T
Sbjct:   220 QKDKEQRRLQQQL-AQQMQQL--NTAT 243

 Score = 153 (58.9 bits), Expect = 7.9e-08, P = 7.9e-08
 Identities = 46/183 (25%), Positives = 88/183 (48%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
             ++F+G +P++W+E E +++ E  G  V  I +++D  QNP +++G  FV +Y    A   
Sbjct:    48 KMFVGQIPRSWSEKELKELFEPYG-AVYQINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 105

Query:   247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
              Q  L+ N K L G    I     K      + A + + L++  +    +   I+ +F  
Sbjct:   106 AQNALH-NIKTLPGMHHPIQM---KPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSP 161

Query:   306 HGEVTKVVMPPGKSG-KRDFGFIHYAERS---SALKAVKDTEKYEIDGQVLEVVLAKPQT 361
              G++ +  +  G  G  R   F+ ++ R+   +A+KA+  ++  E     + V  A  Q 
Sbjct:   162 FGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPIVVKFADTQK 221

Query:   362 DKK 364
             DK+
Sbjct:   222 DKE 224

 Score = 125 (49.1 bits), Expect = 9.9e-05, P = 9.9e-05
 Identities = 25/84 (29%), Positives = 48/84 (57%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P G+ +FI  LP++  ++D+  +  P G+V   ++  DK++  SK F FVS+ +   A+ 
Sbjct:   433 PEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSAQA 492

Query:   164 AIDELHSKELKGKTIRCSLSETKN 187
             AI  ++  ++  K ++  L  +KN
Sbjct:   493 AIQAMNGFQIGMKRLKVQLKRSKN 516

 Score = 82 (33.9 bits), Expect = 7.7e-16, Sum P(2) = 7.7e-16
 Identities = 26/96 (27%), Positives = 46/96 (47%)

Query:   276 SAAASQVKA-----LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIH 328
             SAA SQ +      L++ ++P     + I ++F   G V   KV +    +  + FGF+ 
Sbjct:   424 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 483

Query:   329 YAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364
             Y    SA  A++    ++I  + L+V L + + D K
Sbjct:   484 YDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSK 519


>MGI|MGI:97286 [details] [associations]
            symbol:Ncl "nucleolin" species:10090 "Mus musculus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
            "angiogenesis" evidence=ISO] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=ISO;IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005654
            "nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005938
            "cell cortex" evidence=ISO] [GO:0008022 "protein C-terminus
            binding" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
            evidence=ISO] [GO:0042162 "telomeric DNA binding" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:97286 GO:GO:0005938 GO:GO:0005654
            GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0001525
            GO:GO:0003723 GO:GO:0030529 GO:GO:0042162 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K11294 GeneTree:ENSGT00550000074656 CTD:4691
            HOGENOM:HOG000113885 OMA:KERDTRT OrthoDB:EOG45MN5J ChiTaRS:NCL
            EMBL:X07699 EMBL:AF318184 EMBL:AK050958 EMBL:AK083307 EMBL:AK144894
            EMBL:AK161706 EMBL:AK163275 EMBL:BC005460 EMBL:M22089
            IPI:IPI00317794 PIR:A29958 RefSeq:NP_035010.3 UniGene:Mm.154378
            UniGene:Mm.474153 ProteinModelPortal:P09405 SMR:P09405
            IntAct:P09405 STRING:P09405 PhosphoSite:P09405
            REPRODUCTION-2DPAGE:P09405 PaxDb:P09405 PRIDE:P09405
            Ensembl:ENSMUST00000027438 GeneID:17975 KEGG:mmu:17975
            UCSC:uc007bvl.1 InParanoid:P09405 NextBio:292933 PMAP-CutDB:P09405
            Bgee:P09405 CleanEx:MM_NCL Genevestigator:P09405
            GermOnline:ENSMUSG00000026234 Uniprot:P09405
        Length = 707

 Score = 221 (82.9 bits), Expect = 8.1e-16, Sum P(2) = 8.1e-16
 Identities = 90/340 (26%), Positives = 155/340 (45%)

Query:    82 EKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD 141
             EKP    G D K   A    L  N        L  + +E++L+++ E   D  E+RL+  
Sbjct:   381 EKPK---GRDSKKVRAARTLLAKN--------LSFNITEDELKEVFE---DAMEIRLVS- 425

Query:   142 KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN-RLFIGNVPKNWTE 200
              + G+SKG A++ F+S+  A+K ++E    E+ G+++    +  K  R         W+ 
Sbjct:   426 -QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSG 484

Query:   201 DEFRKVIEDVGPGV--ETIE-------LIKDPQNP-SRNRGFSFVLYYNNACADYSRQKM 250
             +    V+ ++      ET+E        IK PQNP  + +G++F+ +   A  + +++ +
Sbjct:   485 ESKTLVLSNLSYSATKETLEEVFEKATFIKVPQNPHGKPKGYAFIEF---ASFEDAKEAL 541

Query:   251 LNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV 309
              + N  +++G T  +      S    S      K L+VK + ++T+ E +KE F+  G V
Sbjct:   542 NSCNKMEIEGRTIRLELQGSNSRSQPS------KTLFVKGLSEDTTEETLKESFE--GSV 593

Query:   310 TKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT-EKYEIDGQVLEVVLAKPQTDKKTEG 367
                ++   ++G  + FGF+ +     A KA K+  E  EIDG  + +  AKP+ +    G
Sbjct:   594 RARIVTDRETGSSKGFGFVDFNSEEDA-KAAKEAMEDGEIDGNKVTLDWAKPKGEGGFGG 652

Query:   368 TFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQ 407
                   G         G GGF G   G    GFG   GF+
Sbjct:   653 RGGGRGGFGGRGGGRGGRGGFGGRGRG----GFGGRGGFR 688

 Score = 169 (64.5 bits), Expect = 2.1e-09, P = 2.1e-09
 Identities = 70/317 (22%), Positives = 147/317 (46%)

Query:    61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPN-----GSE------V 109
             ++D+  E   ++DD    EEEE   A+ G+ +K+   Q  A         GSE      +
Sbjct:   252 DEDEDDEEEDDEDDDEEEEEEEPVKAAPGKRKKEMTKQKEAPEAKKQKVEGSEPTTPFNL 311

Query:   110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169
             FIG L  + S  +L+     +    ++ ++ D  +G ++ F +V F S E  +KA+ EL 
Sbjct:   312 FIGNLNPNKSVNELKFAISELFAKNDLAVV-DVRTGTNRKFGYVDFESAEDLEKAL-ELT 369

Query:   170 SKELKGKTIRCSLSETKN----RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
               ++ G  I+    + ++    R     + KN + +     +++V      I L+     
Sbjct:   370 GLKVFGNEIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDAMEIRLVSQD-- 427

Query:   226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS-----TPDHSAAAS 280
               +++G +++ + + A A+ + ++   A  ++DG + ++ +   K      T   S  + 
Sbjct:   428 -GKSKGIAYIEFKSEADAEKNLEEKQGA--EIDGRSVSLYYTGEKGQRQERTGKTSTWSG 484

Query:   281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAV 339
             + K L + N+  + + E ++E+F++    T + +P    GK + + FI +A    A +A+
Sbjct:   485 ESKTLVLSNLSYSATKETLEEVFEK---ATFIKVPQNPHGKPKGYAFIEFASFEDAKEAL 541

Query:   340 KDTEKYEIDGQVLEVVL 356
                 K EI+G+ + + L
Sbjct:   542 NSCNKMEIEGRTIRLEL 558

 Score = 165 (63.1 bits), Expect = 6.0e-09, P = 6.0e-09
 Identities = 54/219 (24%), Positives = 105/219 (47%)

Query:    60 SEKDQSAEANRNDDDTPHVEEEEKPTASVGE--DEKDKHAQLLALPPNGSEVFIGGLPKD 117
             SE D  AE N  +     ++         GE    +++  +          + +  L   
Sbjct:   440 SEAD--AEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKTSTWSGESKTLVLSNLSYS 497

Query:   118 ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177
             A++E L ++ E     F +++ ++   G+ KG+AF+ F S E AK+A++  +  E++G+T
Sbjct:   498 ATKETLEEVFEKA--TF-IKVPQNPH-GKPKGYAFIEFASFEDAKEALNSCNKMEIEGRT 553

Query:   178 IRCSLSETKNR------LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRG 231
             IR  L  + +R      LF+  + ++ TE+  ++  E    G     ++ D +  S ++G
Sbjct:   554 IRLELQGSNSRSQPSKTLFVKGLSEDTTEETLKESFE----GSVRARIVTDRETGS-SKG 608

Query:   232 FSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
             F FV + +   A  +++ M +   ++DGN  T+ WA PK
Sbjct:   609 FGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPK 645

 Score = 48 (22.0 bits), Expect = 8.1e-16, Sum P(2) = 8.1e-16
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query:    55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHA 97
             +K+ A E+D   E   ++D+    E++E       E+E  K A
Sbjct:   236 AKSVAEEEDDEEEDEDDEDEDDEEEDDEDDDEEEEEEEPVKAA 278

 Score = 40 (19.1 bits), Expect = 5.5e-15, Sum P(2) = 5.5e-15
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query:    56 KAGASEKDQSAEANRN----DDDTPHVEEEEKPTASVGEDEKD 94
             K GA+   + A+  +N    D D    EE+E  +    +DE++
Sbjct:   124 KKGAATPAKGAKNGKNAKKEDSDEDEDEEDEDDSDEDEDDEEE 166


>ZFIN|ZDB-GENE-040718-300 [details] [associations]
            symbol:celf4 "CUGBP, Elav-like family member 4"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-040718-300 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
            HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 eggNOG:NOG251494
            HOGENOM:HOG000004754 OrthoDB:EOG4RJG30 EMBL:BC076238
            IPI:IPI00491989 RefSeq:NP_001002562.1 UniGene:Dr.81398
            ProteinModelPortal:Q6DGV1 SMR:Q6DGV1 GeneID:436835 KEGG:dre:436835
            CTD:56853 InParanoid:Q6DGV1 NextBio:20831267 ArrayExpress:Q6DGV1
            Bgee:Q6DGV1 Uniprot:Q6DGV1
        Length = 520

 Score = 192 (72.6 bits), Expect = 8.3e-16, Sum P(2) = 8.3e-16
 Identities = 47/142 (33%), Positives = 84/142 (59%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++FIG +P++  E+DLR L E  G ++E+ ++KD+ +G  KG AF+++ ++E A KA   
Sbjct:    48 KLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKAQTA 107

Query:   168 LHS-KELKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
             LH  K L G  + I+   +++++R     LF+G + K   ED+ R++ E  G  +E   +
Sbjct:   108 LHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQCEDDVRRLFESFG-SIEECTI 166

Query:   220 IKDPQNPSRNRGFSFVLYYNNA 241
             ++ P   S+  G +FV Y  +A
Sbjct:   167 LRGPDGNSK--GCAFVKYSTHA 186

 Score = 119 (46.9 bits), Expect = 0.00045, P = 0.00045
 Identities = 50/212 (23%), Positives = 91/212 (42%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
             +LFIG +P+N  E + R + E+ G   E + ++KD +    ++G +F+ Y    CA   R
Sbjct:    48 KLFIGQIPRNLDEKDLRPLFEEFGKIYE-LTVLKD-RFTGMHKGCAFLTY----CA---R 98

Query:   248 QKMLNANFKLDGNTPTISWADP-KSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH 306
             +  L A   L           P +  P  S +  + + L+V  +      + ++ LF+  
Sbjct:    99 ESALKAQTALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLNKQQCEDDVRRLFESF 158

Query:   307 GEVTKVVMPPGKSGK-RDFGFIHY---AERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362
             G + +  +  G  G  +   F+ Y   AE  +A+ A+  ++   + G    +V+    TD
Sbjct:   159 GSIEECTILRGPDGNSKGCAFVKYSTHAEAQAAISALHGSQT--MPGASSSLVVKFADTD 216

Query:   363 K-KTEGTFPYSPGLV----PTHLPHAGYGGFA 389
             K +T        G +    P  L    YG +A
Sbjct:   217 KERTIRRMQQMAGQMGIFNPMALQFGAYGAYA 248

 Score = 104 (41.7 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
 Identities = 23/65 (35%), Positives = 37/65 (56%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++F+G L K   E+D+R L E  G + E  +++  + G SKG AFV + +   A+ AI  
Sbjct:   136 KLFVGMLNKQQCEDDVRRLFESFGSIEECTILRGPD-GNSKGCAFVKYSTHAEAQAAISA 194

Query:   168 LHSKE 172
             LH  +
Sbjct:   195 LHGSQ 199

 Score = 76 (31.8 bits), Expect = 8.3e-16, Sum P(2) = 8.3e-16
 Identities = 20/94 (21%), Positives = 43/94 (45%)

Query:   269 PKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGF 326
             P   P       +   L++ ++P      ++ ++F   G V  +KV +    +  + FGF
Sbjct:   421 PPIIPQQQREGPEGCNLFIYHLPQEFGDGELMQMFLPFGNVISSKVFVDRATNQSKCFGF 480

Query:   327 IHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360
             + +    SA  A++    ++I  + L+V L +P+
Sbjct:   481 VSFDNPGSAQAAIQSMNGFQIGMKRLKVQLKRPK 514


>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
            symbol:zgc:77052 "zgc:77052" species:7955 "Danio
            rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
            HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
            Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
            IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
            STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
            KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
        Length = 309

 Score = 198 (74.8 bits), Expect = 8.7e-16, Sum P(2) = 8.7e-16
 Identities = 52/199 (26%), Positives = 97/199 (48%)

Query:    79 EEEEKPTASVGEDEKDKHAQLLA--LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEV 136
             EE      + GE+   +  Q+ A     +  ++F+GGL  D S++DL+D     G+V + 
Sbjct:    15 EENLNGGEAAGENGAGEGLQIDASKCEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVMDC 74

Query:   137 RLMKDKESGESKGFAFVSFRSKEFAKKAIDE----LHSKELKGKTIRCSLSETKNRLFIG 192
              +  D  +G S+GF F+ F+  +   + + +    L  +++  K       E   ++F+G
Sbjct:    75 TIKMDSNTGRSRGFGFILFKESDSVDRVLQQKEHRLDGRQIDPKRAMAIKKEPVKKIFVG 134

Query:   193 NVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLN 252
              +    TE++ R+     G  +ETIEL  DP+  S+ RGF F+ +      +++ +K+L 
Sbjct:   135 GLNPETTEEKIREYFGSFGE-IETIELPTDPKT-SKRRGFVFITFKE----EFAVKKILE 188

Query:   253 ANF-KLDGNTPTISWADPK 270
               +  + G+   I  A PK
Sbjct:   189 KKYHNVCGSKCEIKIAQPK 207

 Score = 165 (63.1 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 60/249 (24%), Positives = 105/249 (42%)

Query:   184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
             E   ++F+G +  + ++ + +      G  ++    IK   N  R+RGF F+L+  +   
Sbjct:    42 EDAGKMFVGGLSWDTSKKDLKDYFSKFGEVMDCT--IKMDSNTGRSRGFGFILFKESDSV 99

Query:   244 DYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303
             D   Q+      +LDG        DPK     +     VK ++V  +   T+ EKI+E F
Sbjct:   100 DRVLQQK---EHRLDGRQ-----IDPKRAM--AIKKEPVKKIFVGGLNPETTEEKIREYF 149

Query:   304 QRHGEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361
                GE+  + +P  P  S +R F FI + E   A+K + + + + + G   E+ +A+P+ 
Sbjct:   150 GSFGEIETIELPTDPKTSKRRGFVFITFKEEF-AVKKILEKKYHNVCGSKCEIKIAQPKE 208

Query:   362 DKKTEGTFPYSPGLV--------PTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYG 413
               + +       G          P    + GY  +    YG  G G+G   G+     YG
Sbjct:   209 IYQQQQFGARGGGFGGRGRGRGGPGQSWNQGYNNYWNQGYGGQGYGYGGQQGYGGYGGYG 268

Query:   414 RGPMPSGMH 422
                  SG +
Sbjct:   269 NYDYSSGYY 277

 Score = 54 (24.1 bits), Expect = 8.7e-16, Sum P(2) = 8.7e-16
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query:   382 HAGYGGFAGTPYGSVGTGFGVAAGF--QQPMIYGRGPMPSG 420
             + GYGG+    Y S   G+G    +  Q    YG+ P   G
Sbjct:   261 YGGYGGYGNYDYSSGYYGYGSGYDYTDQGAASYGKTPRRGG 301


>ZFIN|ZDB-GENE-000501-2 [details] [associations]
            symbol:celf3a "cugbp, Elav-like family member 3a"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
            HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
            eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
            EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
            RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
            SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
            CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
            Bgee:Q9IBD1 Uniprot:Q9IBD1
        Length = 452

 Score = 193 (73.0 bits), Expect = 9.2e-16, Sum P(2) = 9.2e-16
 Identities = 46/141 (32%), Positives = 85/141 (60%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++FIG +P++  E+DL+ + E  G ++E+ ++KDK +G  KG AF+++ ++E A KA + 
Sbjct:     8 KLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKAQNA 67

Query:   168 LHS-KELKG--KTIRCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
             LH  K L G  + I+   ++++ R    LF+G + K  ++ + RK+ E  G  +E   ++
Sbjct:    68 LHEQKTLPGMNRPIQVKPADSEGRGDRKLFVGMLGKQLSDADVRKMFEPFG-SIEECTVL 126

Query:   221 KDPQNPSRNRGFSFVLYYNNA 241
             + P   S+  G +FV Y +NA
Sbjct:   127 RGPDGASK--GCAFVKYQSNA 145

 Score = 117 (46.2 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
 Identities = 27/69 (39%), Positives = 42/69 (60%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++F+G L K  S+ D+R + EP G + E  +++  + G SKG AFV ++S   A+ AI  
Sbjct:    95 KLFVGMLGKQLSDADVRKMFEPFGSIEECTVLRGPD-GASKGCAFVKYQSNAEAQAAISA 153

Query:   168 LH-SKELKG 175
             LH S+ L G
Sbjct:   154 LHGSRTLPG 162

 Score = 116 (45.9 bits), Expect = 0.00079, P = 0.00079
 Identities = 23/84 (27%), Positives = 46/84 (54%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P G  +FI  LP++ ++ ++  +  P G+V   ++  D+ + +SK F FVSF +   A+ 
Sbjct:   364 PEGCNIFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQA 423

Query:   164 AIDELHSKELKGKTIRCSLSETKN 187
             AI  ++  ++  K ++  L   K+
Sbjct:   424 AIQAMNGFQIGMKRLKVQLKRPKD 447

 Score = 72 (30.4 bits), Expect = 9.2e-16, Sum P(2) = 9.2e-16
 Identities = 17/78 (21%), Positives = 41/78 (52%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
             +++ ++P   +  ++ ++F   G V   KV +    +  + FGF+ +   +SA  A++  
Sbjct:   369 IFIYHLPQEFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 428

Query:   343 EKYEIDGQVLEVVLAKPQ 360
               ++I  + L+V L +P+
Sbjct:   429 NGFQIGMKRLKVQLKRPK 446

 Score = 52 (23.4 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
 Identities = 16/62 (25%), Positives = 34/62 (54%)

Query:   189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
             +FI ++P+ +T+ E  ++    G  V + ++  D +  ++++ F FV + N A A  + Q
Sbjct:   369 IFIYHLPQEFTDSEMLQMFLPFG-NVISAKVFVD-RATNQSKCFGFVSFDNPASAQAAIQ 426

Query:   249 KM 250
              M
Sbjct:   427 AM 428


>MGI|MGI:1342295 [details] [associations]
            symbol:Celf1 "CUGBP, Elav-like family member 1"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0003729 "mRNA binding"
            evidence=ISO] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005737
            "cytoplasm" evidence=IDA;TAS] [GO:0006376 "mRNA splice site
            selection" evidence=IDA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0007286 "spermatid development" evidence=IMP]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0031369 "translation
            initiation factor binding" evidence=IDA] [GO:0040018 "positive
            regulation of multicellular organism growth" evidence=IMP]
            [GO:0042835 "BRE binding" evidence=ISO] [GO:0043484 "regulation of
            RNA splicing" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1342295
            GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
            EMBL:AL672241 HOVERGEN:HBG107646 KO:K13207 CTD:10658
            eggNOG:NOG251494 ChiTaRS:CELF1 GO:GO:0042835 GO:GO:0006376
            EMBL:AJ007987 EMBL:AF267535 EMBL:AK135030 EMBL:AK143698
            EMBL:AK014492 EMBL:AK156725 EMBL:BC021393 EMBL:AF314172
            EMBL:AB050499 EMBL:X61451 IPI:IPI00123205 IPI:IPI00229237
            IPI:IPI00229238 IPI:IPI00395213 PIR:S16865 RefSeq:NP_001231820.1
            RefSeq:NP_001231832.1 RefSeq:NP_059064.2 RefSeq:NP_941955.1
            UniGene:Mm.29495 UniGene:Mm.490161 ProteinModelPortal:P28659
            SMR:P28659 STRING:P28659 PhosphoSite:P28659 PaxDb:P28659
            PRIDE:P28659 Ensembl:ENSMUST00000005643 Ensembl:ENSMUST00000068726
            Ensembl:ENSMUST00000068747 Ensembl:ENSMUST00000111448
            Ensembl:ENSMUST00000111449 Ensembl:ENSMUST00000111451
            Ensembl:ENSMUST00000111452 Ensembl:ENSMUST00000111455
            Ensembl:ENSMUST00000177642 GeneID:13046 KEGG:mmu:13046
            UCSC:uc008ktx.1 GeneTree:ENSGT00560000076837 InParanoid:P28659
            OMA:PTLYNQS NextBio:282946 Bgee:P28659 CleanEx:MM_CUGBP1
            Genevestigator:P28659 GermOnline:ENSMUSG00000005506 GO:GO:0031369
            Uniprot:P28659
        Length = 486

 Score = 188 (71.2 bits), Expect = 9.2e-16, Sum P(2) = 9.2e-16
 Identities = 55/190 (28%), Positives = 102/190 (53%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFAKKAI 165
             ++F+G +P+  SE+DLR+L E  G V+E+ +++D+     +SKG  FV+F +++ A +A 
Sbjct:    17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76

Query:   166 DELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
             + LH+ K L G      ++ + SE  N     +LFIG + K  TE++ R +    G  +E
Sbjct:    77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ-IE 135

Query:   216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADPKSTP 273
                +++ P   SR  G +FV +     A  + + M  A   ++G ++P  + +AD +   
Sbjct:   136 ECRILRGPDGLSR--GCAFVTFTTRTMAQTAIKAMHQAQ-TMEGCSSPMVVKFADTQKDK 192

Query:   274 DHSAAASQVK 283
             +    A Q++
Sbjct:   193 EQKRMAQQLQ 202

 Score = 154 (59.3 bits), Expect = 5.5e-08, P = 5.5e-08
 Identities = 48/183 (26%), Positives = 86/183 (46%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
             ++F+G VP+ W+E + R++ E  G  V  I +++D  QNP +++G  FV +Y    A   
Sbjct:    17 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINILRDRSQNPPQSKGCCFVTFYTRKAA-LE 74

Query:   247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
              Q  L+ N K L G    I    P  +  ++A     + L++  I    +   I+ +F  
Sbjct:    75 AQNALH-NMKVLPGMHHPIQMK-PADSEKNNAVED--RKLFIGMISKKCTENDIRVMFSS 130

Query:   306 HGEVTKVVMPPGKSG-KRDFGFIHYAERS---SALKAVKDTEKYEIDGQVLEVVLAKPQT 361
              G++ +  +  G  G  R   F+ +  R+   +A+KA+   +  E     + V  A  Q 
Sbjct:   131 FGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQK 190

Query:   362 DKK 364
             DK+
Sbjct:   191 DKE 193

 Score = 127 (49.8 bits), Expect = 5.4e-05, P = 5.4e-05
 Identities = 26/84 (30%), Positives = 48/84 (57%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P G+ +FI  LP++  ++DL  +  P G+V   ++  DK++  SK F FVS+ +   A+ 
Sbjct:   398 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQA 457

Query:   164 AIDELHSKELKGKTIRCSLSETKN 187
             AI  ++  ++  K ++  L  +KN
Sbjct:   458 AIQSMNGFQIGMKRLKVQLKRSKN 481

 Score = 79 (32.9 bits), Expect = 9.2e-16, Sum P(2) = 9.2e-16
 Identities = 20/82 (24%), Positives = 40/82 (48%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
             L++ ++P     + + ++F   G V   KV +    +  + FGF+ Y    SA  A++  
Sbjct:   403 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 462

Query:   343 EKYEIDGQVLEVVLAKPQTDKK 364
               ++I  + L+V L + + D K
Sbjct:   463 NGFQIGMKRLKVQLKRSKNDSK 484


>RGD|1307721 [details] [associations]
            symbol:Celf1 "CUGBP, Elav-like family member 1" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=ISO;ISS] [GO:0003729 "mRNA binding"
            evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
            [GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006376 "mRNA splice
            site selection" evidence=IEA;ISO] [GO:0007286 "spermatid
            development" evidence=IEA;ISO] [GO:0031369 "translation initiation
            factor binding" evidence=IEA;ISO] [GO:0040018 "positive regulation
            of multicellular organism growth" evidence=IEA;ISO] [GO:0042835
            "BRE binding" evidence=IEA;ISO] [GO:0043484 "regulation of RNA
            splicing" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307721
            GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723
            GO:GO:0043484 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658
            eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
            GO:GO:0042835 GO:GO:0006376 EMBL:BC098012 IPI:IPI00373642
            RefSeq:NP_001020592.1 UniGene:Rn.22432 ProteinModelPortal:Q4QQT3
            SMR:Q4QQT3 STRING:Q4QQT3 PhosphoSite:Q4QQT3 PRIDE:Q4QQT3
            GeneID:362160 KEGG:rno:362160 UCSC:RGD:1307721 InParanoid:Q4QQT3
            NextBio:678844 Genevestigator:Q4QQT3 Uniprot:Q4QQT3
        Length = 487

 Score = 188 (71.2 bits), Expect = 9.3e-16, Sum P(2) = 9.3e-16
 Identities = 55/190 (28%), Positives = 102/190 (53%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFAKKAI 165
             ++F+G +P+  SE+DLR+L E  G V+E+ +++D+     +SKG  FV+F +++ A +A 
Sbjct:    17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76

Query:   166 DELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
             + LH+ K L G      ++ + SE  N     +LFIG + K  TE++ R +    G  +E
Sbjct:    77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ-IE 135

Query:   216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADPKSTP 273
                +++ P   SR  G +FV +     A  + + M  A   ++G ++P  + +AD +   
Sbjct:   136 ECRILRGPDGLSR--GCAFVTFTTRTMAQTAIKAMHQAQ-TMEGCSSPMVVKFADTQKDK 192

Query:   274 DHSAAASQVK 283
             +    A Q++
Sbjct:   193 EQKRMAQQLQ 202

 Score = 154 (59.3 bits), Expect = 5.5e-08, P = 5.5e-08
 Identities = 48/183 (26%), Positives = 86/183 (46%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
             ++F+G VP+ W+E + R++ E  G  V  I +++D  QNP +++G  FV +Y    A   
Sbjct:    17 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINILRDRSQNPPQSKGCCFVTFYTRKAA-LE 74

Query:   247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
              Q  L+ N K L G    I    P  +  ++A     + L++  I    +   I+ +F  
Sbjct:    75 AQNALH-NMKVLPGMHHPIQMK-PADSEKNNAVED--RKLFIGMISKKCTENDIRVMFSS 130

Query:   306 HGEVTKVVMPPGKSG-KRDFGFIHYAERS---SALKAVKDTEKYEIDGQVLEVVLAKPQT 361
              G++ +  +  G  G  R   F+ +  R+   +A+KA+   +  E     + V  A  Q 
Sbjct:   131 FGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQK 190

Query:   362 DKK 364
             DK+
Sbjct:   191 DKE 193

 Score = 127 (49.8 bits), Expect = 5.4e-05, P = 5.4e-05
 Identities = 26/84 (30%), Positives = 48/84 (57%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P G+ +FI  LP++  ++DL  +  P G+V   ++  DK++  SK F FVS+ +   A+ 
Sbjct:   399 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQA 458

Query:   164 AIDELHSKELKGKTIRCSLSETKN 187
             AI  ++  ++  K ++  L  +KN
Sbjct:   459 AIQSMNGFQIGMKRLKVQLKRSKN 482

 Score = 79 (32.9 bits), Expect = 9.3e-16, Sum P(2) = 9.3e-16
 Identities = 20/82 (24%), Positives = 40/82 (48%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
             L++ ++P     + + ++F   G V   KV +    +  + FGF+ Y    SA  A++  
Sbjct:   404 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 463

Query:   343 EKYEIDGQVLEVVLAKPQTDKK 364
               ++I  + L+V L + + D K
Sbjct:   464 NGFQIGMKRLKVQLKRSKNDSK 485


>UNIPROTKB|Q4QQT3 [details] [associations]
            symbol:Celf1 "CUGBP Elav-like family member 1"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:1307721 GO:GO:0005634
            GO:GO:0005737 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723 GO:GO:0043484
            HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 eggNOG:NOG251494
            HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
            EMBL:BC098012 IPI:IPI00373642 RefSeq:NP_001020592.1
            UniGene:Rn.22432 ProteinModelPortal:Q4QQT3 SMR:Q4QQT3 STRING:Q4QQT3
            PhosphoSite:Q4QQT3 PRIDE:Q4QQT3 GeneID:362160 KEGG:rno:362160
            UCSC:RGD:1307721 InParanoid:Q4QQT3 NextBio:678844
            Genevestigator:Q4QQT3 Uniprot:Q4QQT3
        Length = 487

 Score = 188 (71.2 bits), Expect = 9.3e-16, Sum P(2) = 9.3e-16
 Identities = 55/190 (28%), Positives = 102/190 (53%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFAKKAI 165
             ++F+G +P+  SE+DLR+L E  G V+E+ +++D+     +SKG  FV+F +++ A +A 
Sbjct:    17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76

Query:   166 DELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
             + LH+ K L G      ++ + SE  N     +LFIG + K  TE++ R +    G  +E
Sbjct:    77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ-IE 135

Query:   216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADPKSTP 273
                +++ P   SR  G +FV +     A  + + M  A   ++G ++P  + +AD +   
Sbjct:   136 ECRILRGPDGLSR--GCAFVTFTTRTMAQTAIKAMHQAQ-TMEGCSSPMVVKFADTQKDK 192

Query:   274 DHSAAASQVK 283
             +    A Q++
Sbjct:   193 EQKRMAQQLQ 202

 Score = 154 (59.3 bits), Expect = 5.5e-08, P = 5.5e-08
 Identities = 48/183 (26%), Positives = 86/183 (46%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
             ++F+G VP+ W+E + R++ E  G  V  I +++D  QNP +++G  FV +Y    A   
Sbjct:    17 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINILRDRSQNPPQSKGCCFVTFYTRKAA-LE 74

Query:   247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
              Q  L+ N K L G    I    P  +  ++A     + L++  I    +   I+ +F  
Sbjct:    75 AQNALH-NMKVLPGMHHPIQMK-PADSEKNNAVED--RKLFIGMISKKCTENDIRVMFSS 130

Query:   306 HGEVTKVVMPPGKSG-KRDFGFIHYAERS---SALKAVKDTEKYEIDGQVLEVVLAKPQT 361
              G++ +  +  G  G  R   F+ +  R+   +A+KA+   +  E     + V  A  Q 
Sbjct:   131 FGQIEECRILRGPDGLSRGCAFVTFTTRTMAQTAIKAMHQAQTMEGCSSPMVVKFADTQK 190

Query:   362 DKK 364
             DK+
Sbjct:   191 DKE 193

 Score = 127 (49.8 bits), Expect = 5.4e-05, P = 5.4e-05
 Identities = 26/84 (30%), Positives = 48/84 (57%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P G+ +FI  LP++  ++DL  +  P G+V   ++  DK++  SK F FVS+ +   A+ 
Sbjct:   399 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQA 458

Query:   164 AIDELHSKELKGKTIRCSLSETKN 187
             AI  ++  ++  K ++  L  +KN
Sbjct:   459 AIQSMNGFQIGMKRLKVQLKRSKN 482

 Score = 79 (32.9 bits), Expect = 9.3e-16, Sum P(2) = 9.3e-16
 Identities = 20/82 (24%), Positives = 40/82 (48%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
             L++ ++P     + + ++F   G V   KV +    +  + FGF+ Y    SA  A++  
Sbjct:   404 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 463

Query:   343 EKYEIDGQVLEVVLAKPQTDKK 364
               ++I  + L+V L + + D K
Sbjct:   464 NGFQIGMKRLKVQLKRSKNDSK 485


>UNIPROTKB|F1SDR6 [details] [associations]
            symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
            EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
        Length = 608

 Score = 224 (83.9 bits), Expect = 1.1e-15, P = 1.1e-15
 Identities = 67/266 (25%), Positives = 127/266 (47%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  D +E  L +   P G +  +R+ +D  +  S G+A+++F+    A++A+D
Sbjct:    11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++ + +KG+ IR   S+    L    +GNV  KN  +    K + D       I   K 
Sbjct:    71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNLEDSIDNKALYDTFSTFGNILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               +   +RGF FV +  +  A  + + M N     D       +   +    +  A A +
Sbjct:   131 VCDDHGSRGFGFVHFETHEAAQNAIRTM-NGMLLNDRKVFVGHFKSRREREAELGARALE 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
                +YVKN+  +     +++LF + G++  V +    SG  R FGF+++ +   A KAV 
Sbjct:   190 FTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVT 249

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
             D    E+ G++L V  A+ + +++ E
Sbjct:   250 DMNGKEVSGRLLYVGRAQKRVERQNE 275

 Score = 144 (55.7 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
 Identities = 28/89 (31%), Positives = 53/89 (59%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  +++ A+L A     + +++  L  D  E  L+DL    G +  V++M+D +SG S+G
Sbjct:   174 KSRREREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRD-DSGHSRG 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
             F FV+F   E A+KA+ +++ KE+ G+ +
Sbjct:   233 FGFVNFEKHEDAQKAVTDMNGKEVSGRLL 261

 Score = 108 (43.1 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
 Identities = 29/88 (32%), Positives = 46/88 (52%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
             LYVKN+ D+   EK+++ F  +G +T   VM  G   K  FGF+ ++    A KAV +  
Sbjct:   296 LYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTEGGHSK-GFGFVCFSSPEEATKAVTEMN 354

Query:   344 KYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
                +  + L V LA+ + ++K   T  Y
Sbjct:   355 GRIVGTKPLYVALAQRKEERKAILTNQY 382


>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
            symbol:ncl "nucleolin" species:7955 "Danio rerio"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
            EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
            ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
            Uniprot:B3DH54
        Length = 708

 Score = 217 (81.4 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
 Identities = 75/309 (24%), Positives = 147/309 (47%)

Query:   109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
             +F+  LP   +++DLR++ +   D+   R+     +G S+G A++ F+++  A+KA++E 
Sbjct:   382 LFVKNLPYSITQDDLREIFDQAVDI---RVPMGN-TGTSRGIAYIEFKTEAIAEKALEEA 437

Query:   169 HSKELKGKTIRCSLSETKNR------------LFIGNVPKNWTEDEFRKVIEDVGPGVET 216
                +++G++I    +  K+R            L + N+  + +ED  + V E      + 
Sbjct:   438 QGSDVQGRSIIVDFTGDKSRQGGRGAPSASKVLVVNNLAFSASEDSLQSVFE------KA 491

Query:   217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWA--DPKSTP 273
             +  I+ PQN  R +G++FV + N    + S++ + N N   ++G +  + ++  D +   
Sbjct:   492 VS-IRIPQNNGRPKGYAFVEFEN---VEDSKEALENCNNTDIEGRSIRLEYSQNDRERGG 547

Query:   274 DHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAER 332
                  +   K L+VK + D+T+ + +K+ F   G +   +     +G  + FGF+ + + 
Sbjct:   548 GGRGNSGPTKTLFVKGLSDDTTDQTLKDSFD--GAIAARIATDRDTGSSKGFGFVDF-DN 604

Query:   333 SSALKAVKDT-EKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGT 391
                 KA K+  +  EIDG  + +  AKP+ +    G   +  G         G GGF G 
Sbjct:   605 EQDCKAAKEAMDDGEIDGNKVTLDYAKPKGEGGRGG---FGGGRGGFGGRGGGRGGFGGR 661

Query:   392 PYGSVGTGF 400
               G  G GF
Sbjct:   662 GGGGRGGGF 670

 Score = 150 (57.9 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
 Identities = 81/339 (23%), Positives = 139/339 (41%)

Query:    56 KAGASEKDQSAEANRNDDDTPHVEEEEKP-----TASVGEDEKDKHAQLLALPPNGSEVF 110
             KA   +K   AE + +DDD    EEEE P      A+     K   A+  A      E  
Sbjct:   149 KAAPVKKAAPAEESEDDDDDDESEEEEAPPPKKAAAAAKPAAKAPAAKAPAAKEESDEEE 208

Query:   111 IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF----AKKAID 166
                  +D SEE+  D   P     +  ++K KE  E +         +E     A  A  
Sbjct:   209 DDDEEEDDSEEEEMDTT-PAPKAKKAGMVKAKEESEEEDDDDEEDDDEEEEETPATPAKR 267

Query:   167 ELHSKELKGKTIRCSLSETKNR---LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
             +  +K+ KG T     ++T      LF+GN+  N   DE +  I       E +E I+D 
Sbjct:   268 KAETKKEKG-TPPAKKAKTDGEGFSLFLGNLNNNKDFDELKSAISKFF-SKEGLE-IQDV 324

Query:   224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQV 282
             +     + F +V +     ++   QK L  N K L G    +  A  K     +      
Sbjct:   325 RLGGTKK-FGYVDF----ASEEELQKALELNGKKLLGQPVKLDKARSKENSQENKKERDA 379

Query:   283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVKD 341
             + L+VKN+P + + + ++E+F    +   + +P G +G  R   +I +   + A KA+++
Sbjct:   380 RTLFVKNLPYSITQDDLREIFD---QAVDIRVPMGNTGTSRGIAYIEFKTEAIAEKALEE 436

Query:   342 TEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
              +  ++ G+ + V     ++ +   G    S  LV  +L
Sbjct:   437 AQGSDVQGRSIIVDFTGDKSRQGGRGAPSASKVLVVNNL 475

 Score = 136 (52.9 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
 Identities = 45/178 (25%), Positives = 88/178 (49%)

Query:   104 PNGSEVFI-GGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P+ S+V +   L   ASE+ L+ + E       +R+ ++  +G  KG+AFV F + E +K
Sbjct:   464 PSASKVLVVNNLAFSASEDSLQSVFEK---AVSIRIPQN--NGRPKGYAFVEFENVEDSK 518

Query:   163 KAIDELHSKELKGKTIRCSLSETKNRLFIG----NVP------KNWTEDEFRKVIEDVGP 212
             +A++  ++ +++G++IR   S+       G    + P      K  ++D   + ++D   
Sbjct:   519 EALENCNNTDIEGRSIRLEYSQNDRERGGGGRGNSGPTKTLFVKGLSDDTTDQTLKDSFD 578

Query:   213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
             G     +  D    S ++GF FV + N      +++ M +   ++DGN  T+ +A PK
Sbjct:   579 GAIAARIATDRDTGS-SKGFGFVDFDNEQDCKAAKEAMDDG--EIDGNKVTLDYAKPK 633

 Score = 51 (23.0 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
 Identities = 17/64 (26%), Positives = 26/64 (40%)

Query:    59 ASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDA 118
             A+  ++S+E + +DDD    EEE  P          K     A P   +       P + 
Sbjct:   106 AAPAEESSEEDDDDDDDDESEEEAPPPKKAPA----KATPAKATPAKKAAPVKKAAPAEE 161

Query:   119 SEED 122
             SE+D
Sbjct:   162 SEDD 165

 Score = 44 (20.5 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query:    56 KAGASEKDQSAEANRNDDDTPHVEEEEKP 84
             K G +   Q +E + +DDD     EEE P
Sbjct:    60 KNGKAAAKQESE-DEDDDDEDDESEEEAP 87

 Score = 40 (19.1 bits), Expect = 6.1e-07, Sum P(3) = 6.1e-07
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query:    56 KAGASEKDQSAEANRNDDDTPHVEEEEKP 84
             KA    K+   E++  D D    EEEE P
Sbjct:    17 KAPPPPKEVEEESSEEDSDDD--EEEEAP 43

 Score = 39 (18.8 bits), Expect = 2.4e-07, Sum P(3) = 2.4e-07
 Identities = 14/32 (43%), Positives = 14/32 (43%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRG 415
             G GGF G   G  G G G   GF      GRG
Sbjct:   637 GRGGFGGGRGGFGGRGGG-RGGFGGRGGGGRG 667


>UNIPROTKB|Q4VXU2 [details] [associations]
            symbol:PABPC1L "Polyadenylate-binding protein 1-like"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
            HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
            HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
            UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
            IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
            PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
            Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
            GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
            PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
            GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
            CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
        Length = 614

 Score = 223 (83.6 bits), Expect = 1.5e-15, P = 1.5e-15
 Identities = 66/266 (24%), Positives = 126/266 (47%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  D +E  L +   P G +  +R+ +D  +  S G+A+++F+    A++A+D
Sbjct:    11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++ + LKG+ IR   S+    L    +GN+  KN  +    K + D       I   K 
Sbjct:    71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               +   +RGF FV +  +  A  +   M N     D       +   +    +  A A +
Sbjct:   131 ACDEHGSRGFGFVHFETHEAAQQAINTM-NGMLLNDRKVFVGHFKSRREREAELGARALE 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
                +YVKN+P +   + +++LF + G++  V +    SG  R FGF+++ +   A KAV 
Sbjct:   190 FTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVV 249

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
                  E+ G++L    A+ + +++ E
Sbjct:   250 HMNGKEVSGRLLYAGRAQKRVERQNE 275

 Score = 140 (54.3 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
 Identities = 28/89 (31%), Positives = 52/89 (58%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  +++ A+L A     + +++  LP D  E+ L+DL    G +  V++M+D  SG S+ 
Sbjct:   174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDN-SGHSRC 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
             F FV+F   E A+KA+  ++ KE+ G+ +
Sbjct:   233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261

 Score = 106 (42.4 bits), Expect = 9.6e-13, Sum P(2) = 9.6e-13
 Identities = 28/88 (31%), Positives = 46/88 (52%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
             LYVKN+ D+   +K+++ F  +G +T   VM  G   K  FGF+ ++    A KAV +  
Sbjct:   296 LYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSK-GFGFVCFSSPEEATKAVTEMN 354

Query:   344 KYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
                +  + L V LA+ + ++K   T  Y
Sbjct:   355 GRIVGTKPLYVALAQRKEERKAILTNQY 382


>MGI|MGI:1926034 [details] [associations]
            symbol:Celf3 "CUGBP, Elav-like family member 3"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
            "nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
            evidence=ISO;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008380 "RNA
            splicing" evidence=ISO] [GO:0030317 "sperm motility" evidence=IMP]
            [GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:1926034 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
            HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
            eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
            CTD:11189 OMA:HSAYLNP GO:GO:0000381 OrthoDB:EOG4RJG30 EMBL:AY165052
            EMBL:BC057553 IPI:IPI00461847 IPI:IPI00854025 RefSeq:NP_766022.1
            UniGene:Mm.44292 ProteinModelPortal:Q8CIN6 SMR:Q8CIN6 STRING:Q8CIN6
            PhosphoSite:Q8CIN6 PaxDb:Q8CIN6 PRIDE:Q8CIN6
            Ensembl:ENSMUST00000029784 GeneID:78784 KEGG:mmu:78784
            UCSC:uc008qgl.1 UCSC:uc008qgm.1 InParanoid:Q8CIN6 NextBio:349492
            Bgee:Q8CIN6 CleanEx:MM_TNRC4 Genevestigator:Q8CIN6 Uniprot:Q8CIN6
        Length = 465

 Score = 189 (71.6 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
 Identities = 50/174 (28%), Positives = 100/174 (57%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P+  ++F+G +P+   E+DL+ + E  G +FE+ ++KDK +G  KG AF+++ +++ A K
Sbjct:     4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63

Query:   164 AIDELHS-KELKG--KTIRCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVET 216
             A   LH  K L G  + I+   +++++R    LF+G + K  T+++ RK+ E  G  ++ 
Sbjct:    64 AQSALHEQKTLPGMNRPIQVKPADSESRGDRKLFVGMLGKQQTDEDVRKMFEPFGT-IDE 122

Query:   217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT--ISWAD 268
               +++ P   S+  G +FV +  +A A  +    L+++  L G + +  + +AD
Sbjct:   123 CTVLRGPDGTSK--GCAFVKFQTHAEAQ-AAINTLHSSRTLPGASSSLVVKFAD 173

 Score = 117 (46.2 bits), Expect = 0.00064, P = 0.00064
 Identities = 25/104 (24%), Positives = 52/104 (50%)

Query:    84 PTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKE 143
             P     + ++ +  Q     P+G  +FI  LP++ ++ ++  +  P G V   ++  D+ 
Sbjct:   357 PQQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRA 416

Query:   144 SGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
             + +SK F FVSF +   A+ AI  ++  ++  K ++  L   K+
Sbjct:   417 TNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 460

 Score = 75 (31.5 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
 Identities = 18/78 (23%), Positives = 41/78 (52%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
             +++ ++P   +  +I ++F   G V   KV +    +  + FGF+ +   +SA  A++  
Sbjct:   382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441

Query:   343 EKYEIDGQVLEVVLAKPQ 360
               ++I  + L+V L +P+
Sbjct:   442 NGFQIGMKRLKVQLKRPK 459


>UNIPROTKB|F1NIB4 [details] [associations]
            symbol:HNRNPAB "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
            EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
            Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
        Length = 212

 Score = 179 (68.1 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
 Identities = 48/169 (28%), Positives = 88/169 (52%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++F+GGL  D S++DL+D     G+V +  +  D  +G S+GF F+ F+     +K +++
Sbjct:     1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60

Query:   168 LHSKELKGKTI--RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
                + L G+ I  + +++  K+   ++F+G +    TE++ R+   + G  +E IEL  D
Sbjct:    61 KEHR-LDGRLIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGE-IEAIELPMD 118

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANF-KLDGNTPTISWADPK 270
             P+   R RGF F+ +          +K+L   F  + G+   I  A PK
Sbjct:   119 PKTNKR-RGFVFITFKEEDPV----KKVLEKKFHNVSGSKCEIKVAQPK 162

 Score = 146 (56.5 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 57/220 (25%), Positives = 98/220 (44%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYNNACADYS 246
             ++F+G +  + ++ + +      G   + TI++  DP N  R+RGF F+L+        S
Sbjct:     1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKM--DP-NTGRSRGFGFILFKEPG----S 53

Query:   247 RQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
              +K+L     +LDG        DPK     +     VK ++V  +    + EKI+E F  
Sbjct:    54 VEKVLEQKEHRLDGRL-----IDPKKAM--AMKKDPVKKIFVGGLNPEATEEKIREYFGE 106

Query:   306 HGEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363
              GE+  + +P  P  + +R F FI + E    +K V + + + + G   E+ +A+P   K
Sbjct:   107 FGEIEAIELPMDPKTNKRRGFVFITFKEEDP-VKKVLEKKFHNVSGSKCEIKVAQP---K 162

Query:   364 KTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVA 403
             +      +S G         G G + G   G  G G G A
Sbjct:   163 EVYQQQQFSSG--------GGRGSYGGRGRGGRGGGQGSA 194

 Score = 42 (19.8 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
 Identities = 14/35 (40%), Positives = 16/35 (45%)

Query:   386 GGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSG 420
             GG  G+ YG  G G G   G Q    YG+ P   G
Sbjct:   173 GGGRGS-YG--GRGRGGRGGGQGSANYGKTPRRGG 204


>ZFIN|ZDB-GENE-030826-35 [details] [associations]
            symbol:celf2 "cugbp, Elav-like family member 2"
            species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030826-35 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
            EMBL:AL935165 EMBL:BX511190 EMBL:CABZ01029785 EMBL:CABZ01029786
            EMBL:CABZ01029787 IPI:IPI00994559 Ensembl:ENSDART00000129320
            ArrayExpress:E7F7K3 Bgee:E7F7K3 Uniprot:E7F7K3
        Length = 585

 Score = 186 (70.5 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
 Identities = 53/193 (27%), Positives = 104/193 (53%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFA 161
             P+  ++F+G +P+  SE++L++L EP G V+++ +++D+     +SKG  FV+F +++ A
Sbjct:   112 PDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINILRDRSQNPPQSKGCCFVTFYTRKAA 171

Query:   162 KKAIDELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVG 211
              +A + LH+ K L G      ++ + SE  N     +LFIG V K   E++ R +    G
Sbjct:   172 LEAQNALHNIKTLTGMHHPIQMKPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSPYG 231

Query:   212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADP 269
               +E   +++ P   SR  G +FV +   A A  +  K ++ +  ++G ++P  + +AD 
Sbjct:   232 Q-IEECRILRGPDGLSR--GCAFVTFSTRAMAQ-NAIKAMHQSQTMEGCSSPMVVKFADT 287

Query:   270 KSTPDHSAAASQV 282
             +   +      Q+
Sbjct:   288 QKDKEQRRLQQQL 300

 Score = 157 (60.3 bits), Expect = 3.5e-08, P = 3.5e-08
 Identities = 46/183 (25%), Positives = 89/183 (48%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
             ++F+G +P++W+E E +++ E  G  V  I +++D  QNP +++G  FV +Y    A   
Sbjct:   116 KMFVGQIPRSWSEKELKELFEPYG-AVYQINILRDRSQNPPQSKGCCFVTFYTRKAA-LE 173

Query:   247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
              Q  L+ N K L G    I     K      + A + + L++  +    +   I+ +F  
Sbjct:   174 AQNALH-NIKTLTGMHHPIQM---KPADSEKSNAVEDRKLFIGMVSKKCNENDIRVMFSP 229

Query:   306 HGEVTKVVMPPGKSG-KRDFGFIHYAERS---SALKAVKDTEKYEIDGQVLEVVLAKPQT 361
             +G++ +  +  G  G  R   F+ ++ R+   +A+KA+  ++  E     + V  A  Q 
Sbjct:   230 YGQIEECRILRGPDGLSRGCAFVTFSTRAMAQNAIKAMHQSQTMEGCSSPMVVKFADTQK 289

Query:   362 DKK 364
             DK+
Sbjct:   290 DKE 292

 Score = 124 (48.7 bits), Expect = 0.00015, P = 0.00015
 Identities = 25/84 (29%), Positives = 48/84 (57%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P G+ +FI  LP++  ++D+  +  P G+V   ++  DK++  SK F FVS+ +   A+ 
Sbjct:   497 PEGANLFIYHLPQEFGDQDILQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQA 556

Query:   164 AIDELHSKELKGKTIRCSLSETKN 187
             AI  ++  ++  K ++  L  +KN
Sbjct:   557 AIQAMNGFQIGMKRLKVQLKRSKN 580

 Score = 82 (33.9 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
 Identities = 26/96 (27%), Positives = 46/96 (47%)

Query:   276 SAAASQVKA-----LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIH 328
             SAA SQ +      L++ ++P     + I ++F   G V   KV +    +  + FGF+ 
Sbjct:   488 SAAGSQKEGPEGANLFIYHLPQEFGDQDILQMFMPFGNVVSAKVFIDKQTNLSKCFGFVS 547

Query:   329 YAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364
             Y    SA  A++    ++I  + L+V L + + D K
Sbjct:   548 YDNPVSAQAAIQAMNGFQIGMKRLKVQLKRSKNDSK 583


>UNIPROTKB|Q5SZQ7 [details] [associations]
            symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471121
            HOVERGEN:HBG107646 KO:K13207 HOGENOM:HOG000004754 CTD:11189
            EMBL:AL589765 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO GeneID:11189
            KEGG:hsa:11189 HGNC:HGNC:11967 PharmGKB:PA36654 GenomeRNAi:11189
            NextBio:42591 IPI:IPI00386736 RefSeq:NP_001166120.1 SMR:Q5SZQ7
            STRING:Q5SZQ7 Ensembl:ENST00000290585 UCSC:uc009wmy.3
            EvolutionaryTrace:Q5SZQ7 Uniprot:Q5SZQ7
        Length = 415

 Score = 187 (70.9 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
 Identities = 50/175 (28%), Positives = 100/175 (57%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P+  ++F+G +P+   E+DL+ + E  G +FE+ ++KDK +G  KG AF+++ +++ A K
Sbjct:     4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63

Query:   164 AIDELHS-KELKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVE 215
             A   LH  K L G  + I+   +++++R     LF+G + K  T+++ RK+ E  G  ++
Sbjct:    64 AQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-ID 122

Query:   216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT--ISWAD 268
                +++ P   S+  G +FV +  +A A  +    L+++  L G + +  + +AD
Sbjct:   123 ECTVLRGPDGTSK--GCAFVKFQTHAEAQ-AAINTLHSSRTLPGASSSLVVKFAD 174

 Score = 118 (46.6 bits), Expect = 0.00042, P = 0.00042
 Identities = 25/109 (22%), Positives = 54/109 (49%)

Query:    79 EEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRL 138
             ++   P     + ++ +  Q     P+G  +FI  LP++ ++ ++  +  P G V   ++
Sbjct:   302 QQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKV 361

Query:   139 MKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
               D+ + +SK F FVSF +   A+ AI  ++  ++  K ++  L   K+
Sbjct:   362 FVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 410

 Score = 75 (31.5 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
 Identities = 18/78 (23%), Positives = 41/78 (52%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
             +++ ++P   +  +I ++F   G V   KV +    +  + FGF+ +   +SA  A++  
Sbjct:   332 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 391

Query:   343 EKYEIDGQVLEVVLAKPQ 360
               ++I  + L+V L +P+
Sbjct:   392 NGFQIGMKRLKVQLKRPK 409


>DICTYBASE|DDB_G0293558 [details] [associations]
            symbol:pabpc1A "polyadenylate binding protein (PABP)"
            species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
            vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
            binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
            evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
            GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
            ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
            EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
            ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
        Length = 565

 Score = 222 (83.2 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 70/274 (25%), Positives = 136/274 (49%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P  S +++G L  + SE+ L ++   +G V  +R+ +D  +  S  +A+V++ +   A++
Sbjct:     7 PISSSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAER 66

Query:   164 AIDELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETI-- 217
             A+D L++  ++GK  R   S+    L    +GNV  KN  +    K + D       I  
Sbjct:    67 ALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILS 126

Query:   218 -ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS 276
              +++ D  N S+  GF FV Y     AD +  K+ N    ++G    +    P  +    
Sbjct:   127 CKVVTDDGNSSK--GFGFVHYETQESADKAIAKV-NG-MMINGQKVFVG---PFKSSKER 179

Query:   277 AAASQVKA--LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERS 333
                ++VK   ++ KN+ ++   +++KEL Q++GE+T + +M   K   + FGF ++ E +
Sbjct:   180 GQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANF-ESA 238

Query:   334 SALKAVKDTEKYEI-DGQVLEVVLAKPQTDKKTE 366
              A K V + E  +I  G+ +    A+ + +++ E
Sbjct:   239 EAAKNVVENENGKIFHGKPIYAGRAQKKIEREAE 272

 Score = 209 (78.6 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 83/344 (24%), Positives = 149/344 (43%)

Query:   109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
             VFI  L K    + L D     G++   +++ D +   SKGF FV + ++E A KAI ++
Sbjct:   100 VFIKNLDKGIDHKALYDTFSAFGNILSCKVVTD-DGNSSKGFGFVHYETQESADKAIAKV 158

Query:   169 HSKELKGKTI----------RCSLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVETI 217
             +   + G+ +          R   +E K   +F  N+ ++   D+ +++++  G  +  I
Sbjct:   159 NGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGE-ITNI 217

Query:   218 ELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP---- 273
              ++ D +  S+  GF F    N   A+ ++  + N N K+    P  +    K       
Sbjct:   218 TIMADDKGKSK--GFGFA---NFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAE 272

Query:   274 -DHSAAAS-QVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSG-KRDFGFIHY 329
               H+     Q   LY+KNI D+   +K++E+F + G +T  +VM   K+   + FGF+ Y
Sbjct:   273 LKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCY 332

Query:   330 AERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFA 389
                  A +AV +     I  + L V LA+ +  ++ +    +            G     
Sbjct:   333 TAPDEATRAVTEMNGRMIGTKPLYVALAQRKDIRRAQLEMQHQQKF------KTGIRQQM 386

Query:   390 GTPYGSVGTGFGVAAGFQQPMIYGRG-PMPSGMHMVPMVLPDGQ 432
                YGS G  F   A     ++Y +  P P   +  P+ +P GQ
Sbjct:   387 PPTYGS-GPVFFTPAPVNPQVVYQQMMPRPRNWNGQPVGVPQGQ 429


>UNIPROTKB|E1BNB4 [details] [associations]
            symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
            EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
            Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
        Length = 618

 Score = 222 (83.2 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 65/266 (24%), Positives = 128/266 (48%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  D +E  L +   P G +  +R+ +D  +  S G+A+++F+    A++A+D
Sbjct:    11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++ + +KG+ IR   S+    L    +GN+  KN  +    K + D       I   K 
Sbjct:    71 TMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               +   +RGF FV +  +  A  +   M N     D       +   +    +  A A +
Sbjct:   131 VCDEHGSRGFGFVHFETHEAAQNAISTM-NGMLLNDRKVFVGHFKSRREREVELGARAME 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
                +YVKN+  +   +++++LF + G++  V +    SG  R FGF+++ +   A KAV 
Sbjct:   190 FTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVV 249

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
             +    E+ G++L V  A+ + +++ E
Sbjct:   250 NMNGREVSGRLLYVGRAQKRVERQNE 275

 Score = 135 (52.6 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
 Identities = 26/89 (29%), Positives = 52/89 (58%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  +++  +L A     + +++  L  D  E+ L+DL    G +  V++M+D +SG S+G
Sbjct:   174 KSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRD-DSGHSRG 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
             F FV+F   E A+KA+  ++ +E+ G+ +
Sbjct:   233 FGFVNFEKHEEAQKAVVNMNGREVSGRLL 261

 Score = 109 (43.4 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
 Identities = 29/88 (32%), Positives = 46/88 (52%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
             LYVKN+ D+   EK+++ F  +G +T   VM  G   K  FGF+ ++    A KAV +  
Sbjct:   296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHSK-GFGFVCFSSPEEATKAVTEMN 354

Query:   344 KYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
                +  + L V LA+ + ++K   T  Y
Sbjct:   355 GRIVGTKPLYVALAQRKEERKAILTNQY 382


>UNIPROTKB|D6REZ6 [details] [associations]
            symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 InterPro:IPR006535
            TIGRFAMs:TIGR01648 GO:GO:0003676 HOGENOM:HOG000112240 EMBL:AC098869
            EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00965724
            ProteinModelPortal:D6REZ6 SMR:D6REZ6 Ensembl:ENST00000513473
            ArrayExpress:D6REZ6 Bgee:D6REZ6 Uniprot:D6REZ6
        Length = 193

 Score = 199 (75.1 bits), Expect = 2.3e-15, P = 2.3e-15
 Identities = 43/113 (38%), Positives = 70/113 (61%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G EVF+G +P+D  E++L  + E +G ++E+RLM D + G+++G+AFV +  K  AK
Sbjct:    67 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 125

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
             +A+ EL++ E++ G+ +    S    RLFIG +PK    +E  + I  V  GV
Sbjct:   126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGV 178


>POMBASE|SPBC660.15 [details] [associations]
            symbol:SPBC660.15 "mRNA cleavage factor complex subunit
            (predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
            "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
            "cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
            complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
            evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
            EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
            eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
            OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
            ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
            EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
            OMA:CHKANDG NextBio:20802263 Uniprot:O94432
        Length = 474

 Score = 219 (82.2 bits), Expect = 2.4e-15, P = 2.4e-15
 Identities = 65/219 (29%), Positives = 110/219 (50%)

Query:    65 SAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSE--VFIGGLPKDASEED 122
             +AE   N  +  + E +   T S   +  + +A+  + P N  +  +FIGGL  + +++ 
Sbjct:   120 NAEDGENSKNDNYNENQSALTGSGAMESNEDNAEETS-PFNREDGKMFIGGLNWETTDDS 178

Query:   123 LRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE--LKGKTI-- 178
             LRD  E  G+V +  +M+D  +G S+GF F++F++     K ++E+ SKE  L GK I  
Sbjct:   179 LRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNP----KCVNEVMSKEHHLDGKIIDP 234

Query:   179 -RCSLSETKNR---LFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRGFS 233
              R    E + +   +F+G VP + TE+EFR      G  ++ T+ + KD   P   RGF 
Sbjct:   235 KRAIPREEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRP---RGFG 291

Query:   234 FVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST 272
             FV Y N +  + +   M      + G    +  A PK++
Sbjct:   292 FVTYENESAVEAT---MSQPYITIHGKPVEVKRATPKAS 327

 Score = 152 (58.6 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
 Identities = 56/213 (26%), Positives = 92/213 (43%)

Query:   188 RLFIGNVPKNW--TEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADY 245
             ++FIG +  NW  T+D  R   E  G  ++   +++D     R+RGF F+ + N  C + 
Sbjct:   164 KMFIGGL--NWETTDDSLRDYFEQFGEVLDCT-VMRD-STTGRSRGFGFLTFKNPKCVN- 218

Query:   246 SRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
                ++++    LDG        DPK            K ++V  +P + + E+ +  F +
Sbjct:   219 ---EVMSKEHHLDGKI-----IDPKRAIPREEQEKTAK-MFVGGVPGDCTEEEFRNFFNQ 269

Query:   306 HGEVTKVVMPPGK-SGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT-- 361
              G V    +   K +G+ R FGF+ Y E  SA++A        I G+ +EV  A P+   
Sbjct:   270 FGRVLDATLMMDKDTGRPRGFGFVTY-ENESAVEATMSQPYITIHGKPVEVKRATPKASL 328

Query:   362 -DKKTEGTFPYSPGLVPTHLPHAG-YGGFAGTP 392
              D        Y     P +  +   YGG   TP
Sbjct:   329 RDSHDRHQHGYHGNANPYYAQNMNMYGGM--TP 359

 Score = 42 (19.8 bits), Expect = 7.7e-08, Sum P(2) = 7.7e-08
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query:    60 SEKDQSAEANRNDDDTPHVEEEEKPTAS 87
             S++  SAEA  N +D  +   ++ P  S
Sbjct:    77 SDQQYSAEAEANQEDDLNETSQQAPDPS 104


>FB|FBgn0000114 [details] [associations]
            symbol:aret "arrest" species:7227 "Drosophila melanogaster"
            [GO:0048477 "oogenesis" evidence=IMP] [GO:0007286 "spermatid
            development" evidence=IMP] [GO:0007319 "negative regulation of
            oskar mRNA translation" evidence=IDA;NAS;TAS] [GO:0003729 "mRNA
            binding" evidence=ISS;NAS;TAS] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0030727 "germarium-derived female germ-line cyst
            formation" evidence=TAS] [GO:0042078 "germ-line stem cell division"
            evidence=NAS] [GO:0046011 "regulation of oskar mRNA translation"
            evidence=TAS] [GO:0006378 "mRNA polyadenylation" evidence=TAS]
            [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0017148
            "negative regulation of translation" evidence=IMP] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0043186 "P granule"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IC] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IMP] [GO:0003723 "RNA binding" evidence=IDA] [GO:0007281
            "germ cell development" evidence=IMP] [GO:0031536 "positive
            regulation of exit from mitosis" evidence=IMP] [GO:0002121
            "inter-male aggressive behavior" evidence=IMP] [GO:0007476
            "imaginal disc-derived wing morphogenesis" evidence=IMP]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 EMBL:AE014134 GO:GO:0007286
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
            GO:GO:0002121 HSSP:P19339 GO:GO:0007476 GO:GO:0030727 GO:GO:0007319
            GO:GO:0031536 GO:GO:0042078 GeneTree:ENSGT00560000076837
            GO:GO:0000381 GO:GO:0043186 FlyBase:FBgn0000114 UniGene:Dm.4487
            GeneID:34648 KEGG:dme:Dmel_CG31762 CTD:34648 KO:K02177
            GenomeRNAi:34648 NextBio:789496 EMBL:BT133212 RefSeq:NP_723737.1
            SMR:Q8IP90 MINT:MINT-1597685 STRING:Q8IP90
            EnsemblMetazoa:FBtr0080344 EnsemblMetazoa:FBtr0331645
            UCSC:CG31762-RB InParanoid:Q8IP90 OMA:ASAYMST Uniprot:Q8IP90
        Length = 810

 Score = 223 (83.6 bits), Expect = 2.4e-15, P = 2.4e-15
 Identities = 95/372 (25%), Positives = 169/372 (45%)

Query:    55 SKAG-ASEKDQSAEANRND----DDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEV 109
             S AG  +  +    ANRN     DD      +   T + GE E D         P+  ++
Sbjct:   309 SAAGLVNNNNNPCSANRNVVAMVDDDACFRLDTDATVTYGEKEPD---------PDNIKM 359

Query:   110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169
             F+G +PK   E  LR++ E  G V  + +++DK +G SKG  FV+F ++  A KA D LH
Sbjct:   360 FVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKAQDALH 419

Query:   170 S-KELKGK--TIRCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
             + K L G    I+   ++++NR    LF+G + K   E++ RK+ E  G  +E   +++D
Sbjct:   420 NVKTLNGMYHPIQMKPADSENRNERKLFVGMLNKKLNENDVRKLFEVHG-AIEECTVLRD 478

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT-P-TISWADPKSTPDHSAAAS 280
              QN  +++G +FV +     A  + +  L+ N  ++G T P  + +AD +   +      
Sbjct:   479 -QN-GQSKGCAFVTFATKHAAISAIKVTLSQNKIMEGCTSPLVVKFADTQKEKEQKKI-Q 535

Query:   281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP-PGKSGKRDFGFIHYAERSSALKAV 339
             Q++A  + N+  N +      L Q    VT  ++P P +      G    A   ++++ +
Sbjct:   536 QIQA-NLWNLASNINIP----LGQTATSVTTPILPNPPQQPSPVLGAD--AITPASIQLL 588

Query:   340 KDTEKYEIDGQVLEVV--LAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVG 397
             +  +   +  Q+L+ +  L   Q+   T+ +   + GL+ T +        A     S+ 
Sbjct:   589 QQLQAVGLQHQLLQALTGLGAQQSSSATDTSAVAAAGLL-TPMTVQNLAAIAAMTQPSLS 647

Query:   398 TGFGVAAGFQQP 409
                  AA    P
Sbjct:   648 NAAAAAAAATSP 659

 Score = 119 (46.9 bits), Expect = 0.00082, P = 0.00082
 Identities = 26/84 (30%), Positives = 47/84 (55%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P G  +FI  LP++ ++ DL     P G+V   ++  DK++  SK F FVSF + + A+ 
Sbjct:   723 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQV 782

Query:   164 AIDELHSKELKGKTIRCSLSETKN 187
             AI  ++  ++  K ++  L + K+
Sbjct:   783 AIKAMNGFQVGTKRLKVQLKKPKD 806


>UNIPROTKB|Q08E07 [details] [associations]
            symbol:CELF3 "CUGBP Elav-like family member 3" species:9913
            "Bos taurus" [GO:0048026 "positive regulation of mRNA splicing, via
            spliceosome" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0030317 "sperm motility"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
            "spermatogenesis" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
            GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007283
            GO:GO:0003723 GO:GO:0030317 HOVERGEN:HBG107646 KO:K13207
            GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
            GeneTree:ENSGT00560000076837 EMBL:BC123480 IPI:IPI00690976
            RefSeq:NP_001070313.1 UniGene:Bt.18201 ProteinModelPortal:Q08E07
            SMR:Q08E07 PRIDE:Q08E07 Ensembl:ENSBTAT00000033848 GeneID:513347
            KEGG:bta:513347 CTD:11189 InParanoid:Q08E07 OMA:HSAYLNP
            NextBio:20870823 ArrayExpress:Q08E07 GO:GO:0000381 Uniprot:Q08E07
        Length = 461

 Score = 187 (70.9 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
 Identities = 50/175 (28%), Positives = 100/175 (57%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P+  ++F+G +P+   E+DL+ + E  G +FE+ ++KDK +G  KG AF+++ +++ A K
Sbjct:     4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63

Query:   164 AIDELHS-KELKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVE 215
             A   LH  K L G  + I+   +++++R     LF+G + K  T+++ RK+ E  G  ++
Sbjct:    64 AQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-ID 122

Query:   216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT--ISWAD 268
                +++ P   S+  G +FV +  +A A  +    L+++  L G + +  + +AD
Sbjct:   123 ECTVLRGPDGTSK--GCAFVKFQTHAEAQ-AAINTLHSSRTLPGASSSLVVKFAD 174

 Score = 119 (46.9 bits), Expect = 0.00038, P = 0.00038
 Identities = 25/106 (23%), Positives = 54/106 (50%)

Query:    82 EKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD 141
             ++P     + ++ +  Q     P+G  +FI  LP++ ++ ++  +  P G V   ++  D
Sbjct:   351 QQPPPPPQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVD 410

Query:   142 KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
             + + +SK F FVSF +   A+ AI  ++  ++  K ++  L   K+
Sbjct:   411 RATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 456

 Score = 75 (31.5 bits), Expect = 2.5e-15, Sum P(2) = 2.5e-15
 Identities = 18/78 (23%), Positives = 41/78 (52%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
             +++ ++P   +  +I ++F   G V   KV +    +  + FGF+ +   +SA  A++  
Sbjct:   378 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 437

Query:   343 EKYEIDGQVLEVVLAKPQ 360
               ++I  + L+V L +P+
Sbjct:   438 NGFQIGMKRLKVQLKRPK 455


>UNIPROTKB|G3MXT4 [details] [associations]
            symbol:G3MXT4 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00550000074656 EMBL:DAAA02029625
            Ensembl:ENSBTAT00000065413 Uniprot:G3MXT4
        Length = 630

 Score = 224 (83.9 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
 Identities = 92/354 (25%), Positives = 167/354 (47%)

Query:    82 EKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD 141
             EKP     + +KD+ A+ L L  N        LP   ++++L+++ E   D  E+RL+  
Sbjct:   306 EKPKGK--DSKKDRDARTL-LAKN--------LPYKVTQDELKEVFE---DAVEIRLVS- 350

Query:   142 KESGESKGFAFVSFRSKEFAKKAIDELHSKEL-----KGKTI--RCSLSET----KNRLF 190
              + G+SKG A++ F+++  A+K ++E    E+     KG++   R   + T       L 
Sbjct:   351 -KDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLV 409

Query:   191 IGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS-RNRGFSFVLYYNNACADYSRQK 249
             + N+  + TE+  ++V E           IK PQN + +++G++F+ +   A  + +++ 
Sbjct:   410 LSNLSYSATEETLQEVFEKATH-------IKVPQNQNGKSKGYAFIEF---ASFEDAKEA 459

Query:   250 MLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGE 308
             + + N + ++G    +    P+ +P+  A +   K L+VK + ++T+ E +KE F   G 
Sbjct:   460 LNSCNKREIEGRAIRLELQGPRGSPN--ARSQPSKTLFVKGLSEDTTEETLKESFD--GS 515

Query:   309 VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT-EKYEIDGQVLEVVLAKPQTDKKTE 366
             +   ++   ++G  + FGF+ +     A KA K+  E  EIDG  + +  AKP+ +    
Sbjct:   516 IRARIVTDRETGSSKGFGFVDFNSEEDA-KAAKEAMEDGEIDGNKVTLDWAKPKGEGGFG 574

Query:   367 GTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSG 420
             G      G         G GGF G   G    GFG   GF+     G    P G
Sbjct:   575 GRGGGRGGFGGRGGGRGGRGGFGGRGRG----GFGGRGGFRGGRGGGGDQKPHG 624

 Score = 196 (74.1 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 80/318 (25%), Positives = 144/318 (45%)

Query:    62 KDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHA------QLLALPPNGS-EVFIGGL 114
             K  + + +  DDD    EEEE P     E  K K A      ++    P  S  +F+G L
Sbjct:   182 KSTAEDEDEEDDDDDDEEEEEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTSFNLFVGNL 241

Query:   115 PKDASEEDLRDLCEPIGDVFEVR--LMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172
               + S  +L+     I D+F      + D   G S+ F +V F S E  +KA+ EL   +
Sbjct:   242 NFNKSAPELKT---GISDLFAKNDLAVVDVRIGVSRKFGYVDFESAEDLEKAL-ELTGLK 297

Query:   173 LKGKTIRCSLSETKNR--------LFIGNVPKNWTEDEFRKVIEDVGPGVETIELI-KDP 223
             + G  I+    + K+         L   N+P   T+DE ++V ED    VE I L+ KD 
Sbjct:   298 VFGNEIKLEKPKGKDSKKDRDARTLLAKNLPYKVTQDELKEVFEDA---VE-IRLVSKD- 352

Query:   224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVK 283
                 +++G +++ +   A A+ + ++         G        D +   + S  + + K
Sbjct:   353 ---GKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEKGQSQ--DHRGGKN-STWSGESK 406

Query:   284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT 342
              L + N+  + + E ++E+F++    T + +P  ++GK + + FI +A    A +A+   
Sbjct:   407 TLVLSNLSYSATEETLQEVFEK---ATHIKVPQNQNGKSKGYAFIEFASFEDAKEALNSC 463

Query:   343 EKYEIDGQVLEVVLAKPQ 360
              K EI+G+ + + L  P+
Sbjct:   464 NKREIEGRAIRLELQGPR 481

 Score = 167 (63.8 bits), Expect = 3.0e-09, P = 3.0e-09
 Identities = 54/226 (23%), Positives = 104/226 (46%)

Query:    55 SKAGASEKDQSAEANRNDDDTPHVEEEEKP----TASVGEDEKDKHAQLLALPPNGSEVF 110
             SK G S+     E     D    +EE++      T   G+ +  +  +          + 
Sbjct:   350 SKDGKSKGIAYIEFKTEADAEKTLEEKQGTEIDYTGEKGQSQDHRGGKNSTWSGESKTLV 409

Query:   111 IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170
             +  L   A+EE L+++ E    +     +   ++G+SKG+AF+ F S E AK+A++  + 
Sbjct:   410 LSNLSYSATEETLQEVFEKATHI----KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNK 465

Query:   171 KELKGKTIRCSLSETKNRLFIGNVP------KNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
             +E++G+ IR  L   +      + P      K  +ED   + +++   G     ++ D +
Sbjct:   466 REIEGRAIRLELQGPRGSPNARSQPSKTLFVKGLSEDTTEETLKESFDGSIRARIVTDRE 525

Query:   225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
               S ++GF FV + +   A  +++ M +   ++DGN  T+ WA PK
Sbjct:   526 TGS-SKGFGFVDFNSEEDAKAAKEAMEDG--EIDGNKVTLDWAKPK 568

 Score = 38 (18.4 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query:    66 AEANRNDDDT------PHVEEEEKPTASVGEDEKDK 95
             A+A +N  D+      P   EE+     + EDE D+
Sbjct:     5 AKAGKNQGDSKKMAPPPKEVEEDSEDEEMSEDEDDE 40


>UNIPROTKB|Q5SZQ8 [details] [associations]
            symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0007283 "spermatogenesis" evidence=IEA] [GO:0030317 "sperm
            motility" evidence=IEA] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
            [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003723 "RNA binding"
            evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0048026
            "positive regulation of mRNA splicing, via spliceosome"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0007283
            GO:GO:0030317 GO:GO:0000398 HOVERGEN:HBG107646 KO:K13207
            GO:GO:0048026 eggNOG:NOG251494 CTD:11189 GO:GO:0000381
            OrthoDB:EOG4RJG30 EMBL:AF329264 EMBL:AY165003 EMBL:AL589765
            EMBL:BC052491 EMBL:BC068008 EMBL:BC104758 EMBL:BC143226 EMBL:U80746
            EMBL:AF284423 IPI:IPI00852836 IPI:IPI00852895 IPI:IPI00852999
            RefSeq:NP_009116.3 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO
            ProteinModelPortal:Q5SZQ8 SMR:Q5SZQ8 IntAct:Q5SZQ8
            MINT:MINT-4866187 STRING:Q5SZQ8 PhosphoSite:Q5SZQ8 DMDM:74756184
            PRIDE:Q5SZQ8 Ensembl:ENST00000290583 GeneID:11189 KEGG:hsa:11189
            UCSC:uc001eyr.3 UCSC:uc001eys.2 UCSC:uc009wmx.2
            GeneCards:GC01M151674 HGNC:HGNC:11967 HPA:HPA006292 MIM:612678
            neXtProt:NX_Q5SZQ8 PharmGKB:PA36654 PhylomeDB:Q5SZQ8
            EvolutionaryTrace:Q5SZQ8 GenomeRNAi:11189 NextBio:42591
            ArrayExpress:Q5SZQ8 Bgee:Q5SZQ8 CleanEx:HS_TNRC4
            Genevestigator:Q5SZQ8 Uniprot:Q5SZQ8
        Length = 465

 Score = 187 (70.9 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
 Identities = 50/175 (28%), Positives = 100/175 (57%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P+  ++F+G +P+   E+DL+ + E  G +FE+ ++KDK +G  KG AF+++ +++ A K
Sbjct:     4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63

Query:   164 AIDELHS-KELKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVE 215
             A   LH  K L G  + I+   +++++R     LF+G + K  T+++ RK+ E  G  ++
Sbjct:    64 AQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-ID 122

Query:   216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT--ISWAD 268
                +++ P   S+  G +FV +  +A A  +    L+++  L G + +  + +AD
Sbjct:   123 ECTVLRGPDGTSK--GCAFVKFQTHAEAQ-AAINTLHSSRTLPGASSSLVVKFAD 174

 Score = 118 (46.6 bits), Expect = 0.00050, P = 0.00050
 Identities = 25/109 (22%), Positives = 54/109 (49%)

Query:    79 EEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRL 138
             ++   P     + ++ +  Q     P+G  +FI  LP++ ++ ++  +  P G V   ++
Sbjct:   352 QQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKV 411

Query:   139 MKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
               D+ + +SK F FVSF +   A+ AI  ++  ++  K ++  L   K+
Sbjct:   412 FVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 460

 Score = 75 (31.5 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
 Identities = 18/78 (23%), Positives = 41/78 (52%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
             +++ ++P   +  +I ++F   G V   KV +    +  + FGF+ +   +SA  A++  
Sbjct:   382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441

Query:   343 EKYEIDGQVLEVVLAKPQ 360
               ++I  + L+V L +P+
Sbjct:   442 NGFQIGMKRLKVQLKRPK 459


>RGD|1563168 [details] [associations]
            symbol:Celf3 "CUGBP, Elav-like family member 3" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
            evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISO] [GO:0005575
            "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0007283
            "spermatogenesis" evidence=ISO] [GO:0008150 "biological_process"
            evidence=ND] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0030317
            "sperm motility" evidence=ISO] [GO:0048026 "positive regulation of
            mRNA splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1563168 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
            GO:GO:0048026 GeneTree:ENSGT00560000076837 GO:GO:0000381
            OrthoDB:EOG4RJG30 EMBL:AC133978 IPI:IPI00204869
            ProteinModelPortal:D4A916 Ensembl:ENSRNOT00000028324
            UCSC:RGD:1563168 Uniprot:D4A916
        Length = 494

 Score = 187 (70.9 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
 Identities = 50/175 (28%), Positives = 100/175 (57%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P+  ++F+G +P+   E+DL+ + E  G +FE+ ++KDK +G  KG AF+++ +++ A K
Sbjct:     4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63

Query:   164 AIDELHS-KELKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVE 215
             A   LH  K L G  + I+   +++++R     LF+G + K  T+++ RK+ E  G  ++
Sbjct:    64 AQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-ID 122

Query:   216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT--ISWAD 268
                +++ P   S+  G +FV +  +A A  +    L+++  L G + +  + +AD
Sbjct:   123 ECTVLRGPDGTSK--GCAFVKFQTHAEAQ-AAINTLHSSRTLPGASSSLVVKFAD 174

 Score = 118 (46.6 bits), Expect = 0.00054, P = 0.00054
 Identities = 25/104 (24%), Positives = 52/104 (50%)

Query:    84 PTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKE 143
             P     + ++ +  Q     P+G  +FI  LP++ ++ ++  +  P G V   ++  D+ 
Sbjct:   386 PQQQQQQQQQQQQQQQQQQRPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRA 445

Query:   144 SGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
             + +SK F FVSF +   A+ AI  ++  ++  K ++  L   K+
Sbjct:   446 TNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 489

 Score = 75 (31.5 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
 Identities = 18/78 (23%), Positives = 41/78 (52%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
             +++ ++P   +  +I ++F   G V   KV +    +  + FGF+ +   +SA  A++  
Sbjct:   411 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 470

Query:   343 EKYEIDGQVLEVVLAKPQ 360
               ++I  + L+V L +P+
Sbjct:   471 NGFQIGMKRLKVQLKRPK 488


>MGI|MGI:101947 [details] [associations]
            symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=IEA]
            [GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
            "telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
            mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
            GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
            GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
            HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
            OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
            InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
            EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
            IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
            RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
            RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
            SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
            PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
            Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
            KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
            NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
            GermOnline:ENSMUSG00000000568 Uniprot:Q60668
        Length = 355

 Score = 204 (76.9 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
 Identities = 62/189 (32%), Positives = 93/189 (49%)

Query:    55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGL 114
             S AG +E   SAEA     D    EE+E  + S       +H +  A      ++FIGGL
Sbjct:    51 SAAGGTEGG-SAEAEGAKIDASKNEEDEGHSNS-----SPRHTEAAAAQREEWKMFIGGL 104

Query:   115 PKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 174
               D +++DL+D     G+V +  L  D  +G S+GF FV F+  E   K +D+   K L 
Sbjct:   105 SWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHK-LN 163

Query:   175 GKTI---RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSR 228
             GK I   R    +TK    ++F+G +  +  E++ R+     G  VE+IEL  D +   R
Sbjct:   164 GKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPMDNKTNKR 222

Query:   229 NRGFSFVLY 237
              RGF F+ +
Sbjct:   223 -RGFCFITF 230

 Score = 159 (61.0 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 73/278 (26%), Positives = 117/278 (42%)

Query:   145 GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFR 204
             G   G A       + +K   DE HS      T   +    + ++FIG +  + T+ + +
Sbjct:    55 GTEGGSAEAEGAKIDASKNEEDEGHSNSSPRHTEAAAAQREEWKMFIGGLSWDTTKKDLK 114

Query:   205 KVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263
                   G  V+ T++L  DP    R+RGF FVL+  +   D   + M     KL+G    
Sbjct:   115 DYFSKFGEVVDCTLKL--DPIT-GRSRGFGFVLFKESESVD---KVMDQKEHKLNGKV-- 166

Query:   264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP-PGKSGKR 322
                 DPK           VK ++V  +  +T  EKI+E F   GEV  + +P   K+ KR
Sbjct:   167 ---IDPKRAKAMKTK-EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKR 222

Query:   323 -DFGFIHYAERSSALKAVKDTEKYEIDGQV---LEVVLAKPQTDKKTE----GTFP---Y 371
               F FI + E     K ++  +KY   G     ++V ++K Q  ++ +    G F     
Sbjct:   223 RGFCFITFKEEEPVKKIME--KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRAR 280

Query:   372 SPGLVPTHLPHAGYGGFAGTPYGSVG---TGFGVAAGF 406
               G  P+   + GY  +    YG+ G    G+G   G+
Sbjct:   281 GRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGY 318

 Score = 119 (46.9 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
 Identities = 25/91 (27%), Positives = 50/91 (54%)

Query:    95 KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVS 154
             K A+ +       ++F+GGL  D  EE +R+     G+V  + L  D ++ + +GF F++
Sbjct:   170 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229

Query:   155 FRSKEFAKKAIDE-LHSKELKGKTIRCSLSE 184
             F+ +E  KK +++  H+  L    I+ ++S+
Sbjct:   230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260

 Score = 47 (21.6 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
 Identities = 10/31 (32%), Positives = 13/31 (41%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAGFQQPMIYGR 414
             GYGG+ G  Y      +G      Q   YG+
Sbjct:   311 GYGGYGGYDYTGYNNYYGYGDYSNQQSGYGK 341


>UNIPROTKB|Q7ZWM3 [details] [associations]
            symbol:tnrc4-b "CUGBP Elav-like family member 3-B"
            species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
            mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
            KO:K13207 GO:GO:0048026 EMBL:BC046942 RefSeq:NP_001080695.1
            UniGene:Xl.12160 ProteinModelPortal:Q7ZWM3 SMR:Q7ZWM3 GeneID:380387
            KEGG:xla:380387 CTD:380387 Xenbase:XB-GENE-5796640 Uniprot:Q7ZWM3
        Length = 462

 Score = 184 (69.8 bits), Expect = 4.4e-15, Sum P(2) = 4.4e-15
 Identities = 43/142 (30%), Positives = 85/142 (59%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P+  ++FIG +P++  E+DL+ + E  G ++E+ ++KDK +G  KG AF+++ ++E A K
Sbjct:     4 PDAIKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALK 63

Query:   164 AIDELHS-KELKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVE 215
             A   LH  K L G  + I+   +++++R     LF+G + K  T+++ R++ E  G  ++
Sbjct:    64 AQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFETFG-NID 122

Query:   216 TIELIKDPQNPSRNRGFSFVLY 237
                +++ P   S+  G +FV +
Sbjct:   123 ECTVLRGPDGTSK--GCAFVKF 142

 Score = 116 (45.9 bits), Expect = 0.00081, P = 0.00081
 Identities = 23/84 (27%), Positives = 46/84 (54%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P G  +FI  LP++ ++ ++  +  P G+V   ++  D+ + +SK F FVSF +   A+ 
Sbjct:   374 PEGCNIFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQA 433

Query:   164 AIDELHSKELKGKTIRCSLSETKN 187
             AI  ++  ++  K ++  L   K+
Sbjct:   434 AIQSMNGFQIGMKRLKVQLKRPKD 457

 Score = 112 (44.5 bits), Expect = 7.0e-07, Sum P(2) = 7.0e-07
 Identities = 26/69 (37%), Positives = 44/69 (63%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++F+G L K  ++ED+R + E  G++ E  +++  + G SKG AFV F++   A+ AI+ 
Sbjct:    96 KLFVGMLGKQQTDEDVRRMFETFGNIDECTVLRGPD-GTSKGCAFVKFQTHTEAQAAINA 154

Query:   168 LH-SKELKG 175
             LH S+ L G
Sbjct:   155 LHGSRTLPG 163

 Score = 76 (31.8 bits), Expect = 4.4e-15, Sum P(2) = 4.4e-15
 Identities = 18/78 (23%), Positives = 40/78 (51%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
             +++ ++P   +  +I ++F   G V   KV +    +  + FGF+ +    SA  A++  
Sbjct:   379 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQSM 438

Query:   343 EKYEIDGQVLEVVLAKPQ 360
               ++I  + L+V L +P+
Sbjct:   439 NGFQIGMKRLKVQLKRPK 456

 Score = 49 (22.3 bits), Expect = 0.00040, Sum P(2) = 0.00040
 Identities = 15/62 (24%), Positives = 33/62 (53%)

Query:   189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
             +FI ++P+ +T+ E  ++    G  V + ++  D +  ++++ F FV + N   A  + Q
Sbjct:   379 IFIYHLPQEFTDSEILQMFLPFG-NVISAKVFVD-RATNQSKCFGFVSFDNPGSAQAAIQ 436

Query:   249 KM 250
              M
Sbjct:   437 SM 438


>TAIR|locus:2139340 [details] [associations]
            symbol:RBP-DR1 "RNA-binding protein-defense related 1"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
            [GO:0005737 "cytoplasm" evidence=IDA] [GO:0009626 "plant-type
            hypersensitive response" evidence=IMP] [GO:0080151 "positive
            regulation of salicylic acid mediated signaling pathway"
            evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=RCA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005737 EMBL:CP002687 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 GO:GO:0009626
            KO:K13207 eggNOG:NOG251494 OMA:SAMESIN HSSP:Q60900 GO:GO:0080151
            EMBL:AY084669 EMBL:AK316961 IPI:IPI00541126 RefSeq:NP_567249.1
            UniGene:At.28541 ProteinModelPortal:Q8LFS6 SMR:Q8LFS6 STRING:Q8LFS6
            PaxDb:Q8LFS6 PRIDE:Q8LFS6 EnsemblPlants:AT4G03110.1 GeneID:828090
            KEGG:ath:AT4G03110 TAIR:At4g03110 InParanoid:Q8LFS6
            PhylomeDB:Q8LFS6 ProtClustDB:CLSN2689309 Genevestigator:Q8LFS6
            Uniprot:Q8LFS6
        Length = 441

 Score = 183 (69.5 bits), Expect = 6.0e-15, Sum P(2) = 6.0e-15
 Identities = 51/171 (29%), Positives = 90/171 (52%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++F+G +PK  SE  L  L +    V EV ++KDK +  S+G  F+   S+E A K ++ 
Sbjct:    19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78

Query:   168 LHSKE-LKG-------KTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
              H+K+ L G       K     L   +++LF+G +PKN +E E + +    G  ++ +++
Sbjct:    79 CHNKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQSLFSKYGT-IKDLQI 137

Query:   220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT-P-TISWAD 268
             ++  Q  S+  G +F+ Y     A  S  + +N   K++G+T P  + WAD
Sbjct:   138 LRGAQQTSK--GCAFLKYETKEQA-VSAMESINGKHKMEGSTVPLVVKWAD 185

 Score = 136 (52.9 bits), Expect = 4.6e-06, P = 4.6e-06
 Identities = 27/84 (32%), Positives = 47/84 (55%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P G+ +FI  +P++  +++L    +  G V   ++  DK +G SK F FVS+ S+  A+ 
Sbjct:   346 PEGANLFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQN 405

Query:   164 AIDELHSKELKGKTIRCSLSETKN 187
             AID ++ + L GK ++  L    N
Sbjct:   406 AIDMMNGRHLGGKKLKVQLKRDSN 429

 Score = 123 (48.4 bits), Expect = 0.00013, P = 0.00013
 Identities = 53/241 (21%), Positives = 107/241 (44%)

Query:   184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
             E   +LF+G +PK+ +E +   + ++    V+ + +IKD    + +RG  F+L  +   A
Sbjct:    15 EESVKLFVGQIPKHMSESQLLTLFQEFAV-VDEVNIIKDKITRA-SRGCCFLLCPSREEA 72

Query:   244 DYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ--VKALYVKNIPDNTSTEKIKE 301
             D    K++NA      N  T+  A+      ++    +     L+V  +P N S  +++ 
Sbjct:    73 D----KLVNACH----NKKTLPGANSLLQVKYADGELERLEHKLFVGMLPKNVSEAEVQS 124

Query:   302 LFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTE-KYEIDGQVLEVVLAKP 359
             LF ++G +  + ++   +   +   F+ Y  +  A+ A++    K++++G  + +V+   
Sbjct:   125 LFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWA 184

Query:   360 QTDKKTEGTFPYSPGLVPTHLPHAGYGG------FAGTPYGSVGTGFGVAAGFQQPM-IY 412
              T+++   T         +H+   G G       F   P G V    G   G+ QP   Y
Sbjct:   185 DTERERH-TRRLQKA--QSHIARLGNGDPTNPSLFGALPMGYVPPYNGY--GYHQPPGTY 239

Query:   413 G 413
             G
Sbjct:   240 G 240

 Score = 75 (31.5 bits), Expect = 6.0e-15, Sum P(2) = 6.0e-15
 Identities = 20/76 (26%), Positives = 36/76 (47%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
             L++ NIP     +++   FQ  G V   KV +       + FGF+ Y  +++A  A+   
Sbjct:   351 LFIYNIPREFGDQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMM 410

Query:   343 EKYEIDGQVLEVVLAK 358
                 + G+ L+V L +
Sbjct:   411 NGRHLGGKKLKVQLKR 426

 Score = 50 (22.7 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
 Identities = 18/63 (28%), Positives = 26/63 (41%)

Query:   355 VLAKPQ--TDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIY 412
             ++A+P    +   +GT   SP  VP   P      F   P   +G+G+    G   P  Y
Sbjct:   255 MIAQPNQGNNNALQGT---SPDSVP---PRLARRNFPMPPGNYMGSGYPAMRGHPFPFAY 308

Query:   413 GRG 415
              RG
Sbjct:   309 PRG 311


>UNIPROTKB|Q91579 [details] [associations]
            symbol:tnrc4-a "CUGBP Elav-like family member 3-A"
            species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
            mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            EMBL:U16800 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC057704 EMBL:BC072134
            RefSeq:NP_001079936.1 UniGene:Xl.986 HSSP:Q92879
            ProteinModelPortal:Q91579 SMR:Q91579 GeneID:379627 KEGG:xla:379627
            CTD:379627 Xenbase:XB-GENE-6255196 HOVERGEN:HBG107646 KO:K13207
            GO:GO:0048026 Uniprot:Q91579
        Length = 462

 Score = 184 (69.8 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
 Identities = 43/142 (30%), Positives = 85/142 (59%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P+  ++FIG +P++  E+DL+ + E  G ++E+ ++KDK +G  KG AF+++ ++E A K
Sbjct:     4 PDAIKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALK 63

Query:   164 AIDELHS-KELKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVE 215
             A   LH  K L G  + I+   +++++R     LF+G + K  T+++ R++ E  G  ++
Sbjct:    64 AQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRRMFEPFG-NID 122

Query:   216 TIELIKDPQNPSRNRGFSFVLY 237
                +++ P   S+  G +FV +
Sbjct:   123 ECTVLRGPDGTSK--GCAFVKF 142

 Score = 120 (47.3 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
 Identities = 27/69 (39%), Positives = 45/69 (65%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++F+G L K  ++ED+R + EP G++ E  +++  + G SKG AFV F++   A+ AI+ 
Sbjct:    96 KLFVGMLGKQQTDEDVRRMFEPFGNIDECTVLRGPD-GTSKGCAFVKFQTHTEAQAAINA 154

Query:   168 LH-SKELKG 175
             LH S+ L G
Sbjct:   155 LHGSRTLPG 163

 Score = 74 (31.1 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
 Identities = 18/78 (23%), Positives = 40/78 (51%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
             +++ ++P   +  +I ++F   G V   KV +    +  + FGF+ +    SA  A++  
Sbjct:   379 IFIYHLPQEFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQAM 438

Query:   343 EKYEIDGQVLEVVLAKPQ 360
               ++I  + L+V L +P+
Sbjct:   439 NGFQIGMKRLKVQLKRPK 456

 Score = 48 (22.0 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
 Identities = 15/62 (24%), Positives = 33/62 (53%)

Query:   189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
             +FI ++P+ +T+ E  ++    G  V + ++  D +  ++++ F FV + N   A  + Q
Sbjct:   379 IFIYHLPQEFTDSEILQMFLPFG-NVISAKVFVD-RATNQSKCFGFVSFDNPGSAQAAIQ 436

Query:   249 KM 250
              M
Sbjct:   437 AM 438


>UNIPROTKB|F1NIB2 [details] [associations]
            symbol:HNRNPAB "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
            GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
            EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
            Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
        Length = 263

 Score = 179 (68.1 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
 Identities = 48/169 (28%), Positives = 88/169 (52%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++F+GGL  D S++DL+D     G+V +  +  D  +G S+GF F+ F+     +K +++
Sbjct:     1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60

Query:   168 LHSKELKGKTI--RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
                + L G+ I  + +++  K+   ++F+G +    TE++ R+   + G  +E IEL  D
Sbjct:    61 KEHR-LDGRLIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGE-IEAIELPMD 118

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANF-KLDGNTPTISWADPK 270
             P+   R RGF F+ +          +K+L   F  + G+   I  A PK
Sbjct:   119 PKTNKR-RGFVFITFKEEDPV----KKVLEKKFHNVSGSKCEIKVAQPK 162

 Score = 145 (56.1 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
 Identities = 55/218 (25%), Positives = 97/218 (44%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYNNACADYS 246
             ++F+G +  + ++ + +      G   + TI++  DP N  R+RGF F+L+        S
Sbjct:     1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKM--DP-NTGRSRGFGFILFKEPG----S 53

Query:   247 RQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
              +K+L     +LDG        DPK     +     VK ++V  +    + EKI+E F  
Sbjct:    54 VEKVLEQKEHRLDGRL-----IDPKKAM--AMKKDPVKKIFVGGLNPEATEEKIREYFGE 106

Query:   306 HGEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363
              GE+  + +P  P  + +R F FI + E    +K V + + + + G   E+ +A+P   K
Sbjct:   107 FGEIEAIELPMDPKTNKRRGFVFITFKEEDP-VKKVLEKKFHNVSGSKCEIKVAQP---K 162

Query:   364 KTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFG 401
             +      +S G         G GG  G    +   G+G
Sbjct:   163 EVYQQQQFSSGGGRGSYGGRGRGGRGGAQSQNWNQGYG 200

 Score = 60 (26.2 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
 Identities = 14/39 (35%), Positives = 18/39 (46%)

Query:   384 GYGGFAGTPYGSVGT-GFGVAAGFQQPMI-YGRGPMPSG 420
             GYGG+ G  Y   G  G+G    + Q    YG+ P   G
Sbjct:   217 GYGGYGGYDYSGYGYYGYGPGYDYSQGSANYGKTPRRGG 255


>UNIPROTKB|F1ND14 [details] [associations]
            symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0040018 "positive regulation of multicellular organism growth"
            evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0043484
            "regulation of RNA splicing" evidence=IEA] [GO:0003729 "mRNA
            binding" evidence=IEA] [GO:0006376 "mRNA splice site selection"
            evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
            [GO:0031369 "translation initiation factor binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0040018 GO:GO:0043484 IPI:IPI00854332 GO:GO:0042835
            GO:GO:0006376 GeneTree:ENSGT00560000076837 OMA:PTLYNQS
            EMBL:AADN02033464 Ensembl:ENSGALT00000013143
            Ensembl:ENSGALT00000038511 Uniprot:F1ND14
        Length = 485

 Score = 180 (68.4 bits), Expect = 7.9e-15, Sum P(2) = 7.9e-15
 Identities = 54/190 (28%), Positives = 101/190 (53%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFAKKAI 165
             ++F+G +P+   E+DLR+L E  G V+E+ +++D+     +SKG  FV+F +++ A +A 
Sbjct:    17 KMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76

Query:   166 DELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
             + LH+ K L G      ++ + SE  N     +LFIG + K   E++ R +    G  +E
Sbjct:    77 NALHNMKILPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFGQ-IE 135

Query:   216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADPKSTP 273
                +++ P   SR  G +FV +   A A  + + M  A   ++G ++P  + +AD +   
Sbjct:   136 ECRILRGPDGLSR--GCAFVTFTTRAMAQTAIKAMHQAQ-TMEGCSSPIVVKFADTQKDK 192

Query:   274 DHSAAASQVK 283
             +    A Q++
Sbjct:   193 EQKRIAQQLQ 202

 Score = 151 (58.2 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 48/183 (26%), Positives = 86/183 (46%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
             ++F+G VP++W E + R++ E  G  V  I +++D  QNP +++G  FV +Y    A   
Sbjct:    17 KMFVGQVPRSWCEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 74

Query:   247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
              Q  L+ N K L G    I    P  +  ++A     + L++  I    +   I+ +F  
Sbjct:    75 AQNALH-NMKILPGMHHPIQMK-PADSEKNNAVED--RKLFIGMISKKCNENDIRVMFSP 130

Query:   306 HGEVTKVVMPPGKSG-KRDFGFIHYAERS---SALKAVKDTEKYEIDGQVLEVVLAKPQT 361
              G++ +  +  G  G  R   F+ +  R+   +A+KA+   +  E     + V  A  Q 
Sbjct:   131 FGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVVKFADTQK 190

Query:   362 DKK 364
             DK+
Sbjct:   191 DKE 193

 Score = 127 (49.8 bits), Expect = 5.3e-05, P = 5.3e-05
 Identities = 26/84 (30%), Positives = 48/84 (57%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P G+ +FI  LP++  ++DL  +  P G+V   ++  DK++  SK F FVS+ +   A+ 
Sbjct:   397 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQA 456

Query:   164 AIDELHSKELKGKTIRCSLSETKN 187
             AI  ++  ++  K ++  L  +KN
Sbjct:   457 AIQSMNGFQIGMKRLKVQLKRSKN 480

 Score = 79 (32.9 bits), Expect = 7.9e-15, Sum P(2) = 7.9e-15
 Identities = 20/82 (24%), Positives = 40/82 (48%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
             L++ ++P     + + ++F   G V   KV +    +  + FGF+ Y    SA  A++  
Sbjct:   402 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 461

Query:   343 EKYEIDGQVLEVVLAKPQTDKK 364
               ++I  + L+V L + + D K
Sbjct:   462 NGFQIGMKRLKVQLKRSKNDSK 483


>UNIPROTKB|Q5F3T7 [details] [associations]
            symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
            GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
            GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
            EMBL:AJ851563 EMBL:AB050497 IPI:IPI00581213 IPI:IPI00854332
            RefSeq:NP_001012539.1 UniGene:Gga.14943 UniGene:Gga.56092
            ProteinModelPortal:Q5F3T7 SMR:Q5F3T7 STRING:Q5F3T7 PRIDE:Q5F3T7
            GeneID:373923 KEGG:gga:373923 CTD:10658 eggNOG:NOG251494
            HOGENOM:HOG000004754 InParanoid:Q5F3T7 OrthoDB:EOG4N8R4X
            NextBio:20813455 Uniprot:Q5F3T7
        Length = 489

 Score = 180 (68.4 bits), Expect = 8.1e-15, Sum P(2) = 8.1e-15
 Identities = 54/190 (28%), Positives = 101/190 (53%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFAKKAI 165
             ++F+G +P+   E+DLR+L E  G V+E+ +++D+     +SKG  FV+F +++ A +A 
Sbjct:    17 KMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76

Query:   166 DELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
             + LH+ K L G      ++ + SE  N     +LFIG + K   E++ R +    G  +E
Sbjct:    77 NALHNMKILPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFGQ-IE 135

Query:   216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADPKSTP 273
                +++ P   SR  G +FV +   A A  + + M  A   ++G ++P  + +AD +   
Sbjct:   136 ECRILRGPDGLSR--GCAFVTFTTRAMAQTAIKAMHQAQ-TMEGCSSPIVVKFADTQKDK 192

Query:   274 DHSAAASQVK 283
             +    A Q++
Sbjct:   193 EQKRIAQQLQ 202

 Score = 151 (58.2 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 48/183 (26%), Positives = 86/183 (46%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
             ++F+G VP++W E + R++ E  G  V  I +++D  QNP +++G  FV +Y    A   
Sbjct:    17 KMFVGQVPRSWCEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 74

Query:   247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
              Q  L+ N K L G    I    P  +  ++A     + L++  I    +   I+ +F  
Sbjct:    75 AQNALH-NMKILPGMHHPIQMK-PADSEKNNAVED--RKLFIGMISKKCNENDIRVMFSP 130

Query:   306 HGEVTKVVMPPGKSG-KRDFGFIHYAERS---SALKAVKDTEKYEIDGQVLEVVLAKPQT 361
              G++ +  +  G  G  R   F+ +  R+   +A+KA+   +  E     + V  A  Q 
Sbjct:   131 FGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPIVVKFADTQK 190

Query:   362 DKK 364
             DK+
Sbjct:   191 DKE 193

 Score = 127 (49.8 bits), Expect = 5.4e-05, P = 5.4e-05
 Identities = 26/84 (30%), Positives = 48/84 (57%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P G+ +FI  LP++  ++DL  +  P G+V   ++  DK++  SK F FVS+ +   A+ 
Sbjct:   401 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQA 460

Query:   164 AIDELHSKELKGKTIRCSLSETKN 187
             AI  ++  ++  K ++  L  +KN
Sbjct:   461 AIQSMNGFQIGMKRLKVQLKRSKN 484

 Score = 79 (32.9 bits), Expect = 8.1e-15, Sum P(2) = 8.1e-15
 Identities = 20/82 (24%), Positives = 40/82 (48%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
             L++ ++P     + + ++F   G V   KV +    +  + FGF+ Y    SA  A++  
Sbjct:   406 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 465

Query:   343 EKYEIDGQVLEVVLAKPQTDKK 364
               ++I  + L+V L + + D K
Sbjct:   466 NGFQIGMKRLKVQLKRSKNDSK 487


>RGD|620365 [details] [associations]
            symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
            process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
            evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
            [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
            evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
            evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
            evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
            Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
            GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
            OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
            Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
            EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
            IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
            RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
            ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
            PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
            UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
            ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
            Uniprot:Q9JJ54
        Length = 353

 Score = 200 (75.5 bits), Expect = 8.6e-15, Sum P(2) = 8.6e-15
 Identities = 61/189 (32%), Positives = 91/189 (48%)

Query:    55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGL 114
             S AG +E   S EA     D    EE+E  + S       +H +         ++FIGGL
Sbjct:    49 SAAGGTEGG-STEAEGAKIDASKNEEDEGHSNS-----SPRHTEAATAQREEWKMFIGGL 102

Query:   115 PKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 174
               D +++DL+D     GDV +  L  D  +G S+GF FV F+  E   K +D+   K L 
Sbjct:   103 SWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHK-LN 161

Query:   175 GKTI---RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSR 228
             GK I   R    +TK    ++F+G +  +  E++ R+     G  VE+IEL  D +   R
Sbjct:   162 GKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPMDNKTNKR 220

Query:   229 NRGFSFVLY 237
              RGF F+ +
Sbjct:   221 -RGFCFITF 228

 Score = 161 (61.7 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
 Identities = 71/262 (27%), Positives = 113/262 (43%)

Query:   161 AKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIEL 219
             +K   DE HS      T   +    + ++FIG +  + T+ + +      G  V+ T++L
Sbjct:    69 SKNEEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKL 128

Query:   220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
               DP    R+RGF FVL+  +   D   + M     KL+G        DPK         
Sbjct:   129 --DPIT-GRSRGFGFVLFKESESVD---KVMDQKEHKLNGKV-----IDPKRAKAMKTK- 176

Query:   280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP-PGKSGKR-DFGFIHYAERSSALK 337
               VK ++V  +  +T  EKI+E F   GEV  + +P   K+ KR  F FI + E     K
Sbjct:   177 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 236

Query:   338 AVKDTEKYEIDGQV---LEVVLAKPQTDKKTE----GTFP---YSPGLVPTHLPHAGYGG 387
              ++  +KY   G     ++V ++K Q  ++ +    G F       G  P+   + GY  
Sbjct:   237 IME--KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSN 294

Query:   388 FAGTPYGSVG---TGFGVAAGF 406
             +    YGS G    G+G   G+
Sbjct:   295 YWNQGYGSYGYNSQGYGGYGGY 316

 Score = 119 (46.9 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
 Identities = 25/91 (27%), Positives = 50/91 (54%)

Query:    95 KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVS 154
             K A+ +       ++F+GGL  D  EE +R+     G+V  + L  D ++ + +GF F++
Sbjct:   168 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 227

Query:   155 FRSKEFAKKAIDE-LHSKELKGKTIRCSLSE 184
             F+ +E  KK +++  H+  L    I+ ++S+
Sbjct:   228 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 258

 Score = 48 (22.0 bits), Expect = 8.6e-15, Sum P(2) = 8.6e-15
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAGFQQPMIYGR 414
             GYGG+ G  Y    + +G      Q   YG+
Sbjct:   309 GYGGYGGYDYTGYNSYYGYGDYSNQQSGYGK 339

 Score = 42 (19.8 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query:   382 HAGYGGFAGTPYGSVGTGFG 401
             + GYGG+  T Y S   G+G
Sbjct:   310 YGGYGGYDYTGYNSY-YGYG 328


>UNIPROTKB|Q9JJ54 [details] [associations]
            symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
            GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
            GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
            HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
            GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
            EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
            IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
            RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
            RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
            SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
            GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
            InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
            Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
        Length = 353

 Score = 200 (75.5 bits), Expect = 8.6e-15, Sum P(2) = 8.6e-15
 Identities = 61/189 (32%), Positives = 91/189 (48%)

Query:    55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGL 114
             S AG +E   S EA     D    EE+E  + S       +H +         ++FIGGL
Sbjct:    49 SAAGGTEGG-STEAEGAKIDASKNEEDEGHSNS-----SPRHTEAATAQREEWKMFIGGL 102

Query:   115 PKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 174
               D +++DL+D     GDV +  L  D  +G S+GF FV F+  E   K +D+   K L 
Sbjct:   103 SWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHK-LN 161

Query:   175 GKTI---RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSR 228
             GK I   R    +TK    ++F+G +  +  E++ R+     G  VE+IEL  D +   R
Sbjct:   162 GKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPMDNKTNKR 220

Query:   229 NRGFSFVLY 237
              RGF F+ +
Sbjct:   221 -RGFCFITF 228

 Score = 161 (61.7 bits), Expect = 5.1e-10, Sum P(2) = 5.1e-10
 Identities = 71/262 (27%), Positives = 113/262 (43%)

Query:   161 AKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIEL 219
             +K   DE HS      T   +    + ++FIG +  + T+ + +      G  V+ T++L
Sbjct:    69 SKNEEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKL 128

Query:   220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
               DP    R+RGF FVL+  +   D   + M     KL+G        DPK         
Sbjct:   129 --DPIT-GRSRGFGFVLFKESESVD---KVMDQKEHKLNGKV-----IDPKRAKAMKTK- 176

Query:   280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP-PGKSGKR-DFGFIHYAERSSALK 337
               VK ++V  +  +T  EKI+E F   GEV  + +P   K+ KR  F FI + E     K
Sbjct:   177 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 236

Query:   338 AVKDTEKYEIDGQV---LEVVLAKPQTDKKTE----GTFP---YSPGLVPTHLPHAGYGG 387
              ++  +KY   G     ++V ++K Q  ++ +    G F       G  P+   + GY  
Sbjct:   237 IME--KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSN 294

Query:   388 FAGTPYGSVG---TGFGVAAGF 406
             +    YGS G    G+G   G+
Sbjct:   295 YWNQGYGSYGYNSQGYGGYGGY 316

 Score = 119 (46.9 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
 Identities = 25/91 (27%), Positives = 50/91 (54%)

Query:    95 KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVS 154
             K A+ +       ++F+GGL  D  EE +R+     G+V  + L  D ++ + +GF F++
Sbjct:   168 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 227

Query:   155 FRSKEFAKKAIDE-LHSKELKGKTIRCSLSE 184
             F+ +E  KK +++  H+  L    I+ ++S+
Sbjct:   228 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 258

 Score = 48 (22.0 bits), Expect = 8.6e-15, Sum P(2) = 8.6e-15
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAGFQQPMIYGR 414
             GYGG+ G  Y    + +G      Q   YG+
Sbjct:   309 GYGGYGGYDYTGYNSYYGYGDYSNQQSGYGK 339

 Score = 42 (19.8 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query:   382 HAGYGGFAGTPYGSVGTGFG 401
             + GYGG+  T Y S   G+G
Sbjct:   310 YGGYGGYDYTGYNSY-YGYG 328


>UNIPROTKB|F1NCW4 [details] [associations]
            symbol:HNRNPD "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
            complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
            evidence=IEA] [GO:0043488 "regulation of mRNA stability"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
            GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
            IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
            Uniprot:F1NCW4
        Length = 258

 Score = 183 (69.5 bits), Expect = 9.5e-15, Sum P(2) = 9.5e-15
 Identities = 47/136 (34%), Positives = 73/136 (53%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++FIGGL  D +++DL+D     G+V +  L  D  +G S+GF FV F+  E   K +D+
Sbjct:     1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60

Query:   168 LHSKELKGKTI---RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
                K L GK I   R    +TK    ++F+G +  +  E++ R+     G  VE+IEL  
Sbjct:    61 KEHK-LNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGAFGE-VESIELPM 118

Query:   222 DPQNPSRNRGFSFVLY 237
             D +   R RGF F+ +
Sbjct:   119 DNKTNKR-RGFCFITF 133

 Score = 147 (56.8 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
 Identities = 64/235 (27%), Positives = 104/235 (44%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYNNACADYS 246
             ++FIG +  + T+ + +      G  V+ T++L  DP    R+RGF FVL+  +   D  
Sbjct:     1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKL--DPIT-GRSRGFGFVLFKESESVD-- 55

Query:   247 RQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH 306
              + M     KL+G        DPK           VK ++V  +  +T  EKI+E F   
Sbjct:    56 -KVMDQKEHKLNGKV-----IDPKRAKAMKTK-EPVKKIFVGGLSPDTPEEKIREYFGAF 108

Query:   307 GEVTKVVMP-PGKSGKR-DFGFIHYAERSSALKAVKDTEKYEIDGQV---LEVVLAKPQT 361
             GEV  + +P   K+ KR  F FI + E     K ++  +KY   G     ++V ++K Q 
Sbjct:   109 GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME--KKYHNVGLSKCEIKVAMSKEQY 166

Query:   362 DKKTE----GTF---PYSPGLVPTHLPHAGYGGFAGTPYGSVG---TGFGVAAGF 406
              ++ +    G F       G  P+   + GY  +    YG+ G    G+G   G+
Sbjct:   167 QQQQQWGSRGGFVGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGY 221

 Score = 120 (47.3 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
 Identities = 25/91 (27%), Positives = 50/91 (54%)

Query:    95 KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVS 154
             K A+ +       ++F+GGL  D  EE +R+     G+V  + L  D ++ + +GF F++
Sbjct:    73 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFIT 132

Query:   155 FRSKEFAKKAIDE-LHSKELKGKTIRCSLSE 184
             F+ +E  KK +++  H+  L    I+ ++S+
Sbjct:   133 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 163

 Score = 48 (22.0 bits), Expect = 9.5e-15, Sum P(2) = 9.5e-15
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAGFQQPMIYGR 414
             GYGG+ G  Y      +G +    Q   YG+
Sbjct:   214 GYGGYGGYDYTGYNNYYGYSDYSNQQSGYGK 244


>UNIPROTKB|Q5R995 [details] [associations]
            symbol:CELF1 "CUGBP Elav-like family member 1" species:9601
            "Pongo abelii" [GO:0003723 "RNA binding" evidence=ISS] [GO:0043484
            "regulation of RNA splicing" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
            HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 EMBL:CR859496
            RefSeq:NP_001125976.1 UniGene:Pab.4290 ProteinModelPortal:Q5R995
            SMR:Q5R995 PRIDE:Q5R995 GeneID:100172914 KEGG:pon:100172914
            InParanoid:Q5R995 Uniprot:Q5R995
        Length = 513

 Score = 180 (68.4 bits), Expect = 9.7e-15, Sum P(2) = 9.7e-15
 Identities = 55/190 (28%), Positives = 101/190 (53%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFAKKAI 165
             ++F+G +P+  SE+DLR+L E  G V+E+ +++D+     +SKG  FV+F +++ A +A 
Sbjct:    44 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 103

Query:   166 DELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
             + LH+ K L G      ++ + SE  N     +LFIG + K  TE++ R +    G  +E
Sbjct:   104 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQ-IE 162

Query:   216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADPKSTP 273
                ++  P   SR  G + V +   A A  + + M  A   ++G ++P  + +AD +   
Sbjct:   163 ECRILWGPDGLSR--GCALVTFTTRAMAQTAIKAMHQAQ-TMEGCSSPMVVKFADTQKDK 219

Query:   274 DHSAAASQVK 283
             +    A Q++
Sbjct:   220 EQKRMAQQLQ 229

 Score = 145 (56.1 bits), Expect = 6.0e-07, P = 6.0e-07
 Identities = 47/183 (25%), Positives = 85/183 (46%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
             ++F+G VP+ W+E + R++ E  G  V  I +++D  QNP +++G  FV +Y    A   
Sbjct:    44 KMFVGQVPRTWSEKDLRELFEQYG-AVYEINVLRDRSQNPPQSKGCCFVTFYTRKAA-LE 101

Query:   247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
              Q  L+ N K L G    I    P  +  ++A     + L++  I    +   I+ +F  
Sbjct:   102 AQNALH-NMKVLPGMHHPIQMK-PADSEKNNAVED--RKLFIGMISKKCTENDIRVMFSS 157

Query:   306 HGEVTKVVMPPGKSG-KRDFGFIHYAERS---SALKAVKDTEKYEIDGQVLEVVLAKPQT 361
              G++ +  +  G  G  R    + +  R+   +A+KA+   +  E     + V  A  Q 
Sbjct:   158 FGQIEECRILWGPDGLSRGCALVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFADTQK 217

Query:   362 DKK 364
             DK+
Sbjct:   218 DKE 220

 Score = 127 (49.8 bits), Expect = 5.8e-05, P = 5.8e-05
 Identities = 26/84 (30%), Positives = 48/84 (57%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P G+ +FI  LP++  ++DL  +  P G+V   ++  DK++  SK F FVS+ +   A+ 
Sbjct:   425 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQA 484

Query:   164 AIDELHSKELKGKTIRCSLSETKN 187
             AI  ++  ++  K ++  L  +KN
Sbjct:   485 AIQSMNGFQIGMKRLKVQLKRSKN 508

 Score = 79 (32.9 bits), Expect = 9.7e-15, Sum P(2) = 9.7e-15
 Identities = 20/82 (24%), Positives = 40/82 (48%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
             L++ ++P     + + ++F   G V   KV +    +  + FGF+ Y    SA  A++  
Sbjct:   430 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 489

Query:   343 EKYEIDGQVLEVVLAKPQTDKK 364
               ++I  + L+V L + + D K
Sbjct:   490 NGFQIGMKRLKVQLKRSKNDSK 511


>UNIPROTKB|F1PA19 [details] [associations]
            symbol:HNRNPAB "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
            Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
        Length = 264

 Score = 182 (69.1 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
 Identities = 41/135 (30%), Positives = 77/135 (57%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++F+GGL  D S++DL+D     G+V +  +  D  +G S+GF F+ F+     +K +D+
Sbjct:     1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60

Query:   168 LHSKELKGKTI--RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
                + L G+ I  + +++  K+   ++F+G +    TE++ R+   + G  +E IEL  D
Sbjct:    61 KEHR-LDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGE-IEAIELPMD 118

Query:   223 PQNPSRNRGFSFVLY 237
             P++  R RGF F+ +
Sbjct:   119 PKSNKR-RGFVFITF 132

 Score = 137 (53.3 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
 Identities = 46/166 (27%), Positives = 82/166 (49%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYNNACADYS 246
             ++F+G +  + ++ + +      G  V+ TI++  DP N  R+RGF F+L+ + A    S
Sbjct:     1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM--DP-NTGRSRGFGFILFKDAA----S 53

Query:   247 RQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
              +K+L+    +LDG        DPK     +     VK ++V  +    + EKI+E F  
Sbjct:    54 VEKVLDQKEHRLDGRV-----IDPKKAM--AMKKDPVKKIFVGGLNPEATEEKIREYFGE 106

Query:   306 HGEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349
              GE+  + +P  P  + +R F FI + E    +K V + + + I G
Sbjct:   107 FGEIEAIELPMDPKSNKRRGFVFITFKEEEP-VKKVLEKKFHTISG 151

 Score = 121 (47.7 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
 Identities = 32/112 (28%), Positives = 58/112 (51%)

Query:    74 DTPHVEE--EEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIG 131
             D   VE+  ++K     G     K A  +   P   ++F+GGL  +A+EE +R+     G
Sbjct:    50 DAASVEKVLDQKEHRLDGRVIDPKKAMAMKKDPV-KKIFVGGLNPEATEEKIREYFGEFG 108

Query:   132 DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE-LHSKELKGKTIRCSL 182
             ++  + L  D +S + +GF F++F+ +E  KK +++  H+  + G   RC L
Sbjct:   109 EIEAIELPMDPKSNKRRGFVFITFKEEEPVKKVLEKKFHT--ISGSK-RCGL 157

 Score = 97 (39.2 bits), Expect = 0.00094, Sum P(2) = 0.00094
 Identities = 22/71 (30%), Positives = 41/71 (57%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEVTK--VVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
             ++V  +  +TS + +K+ F + GEV    + M P     R FGFI + + +S  K V D 
Sbjct:     2 MFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEK-VLDQ 60

Query:   343 EKYEIDGQVLE 353
             +++ +DG+V++
Sbjct:    61 KEHRLDGRVID 71

 Score = 54 (24.1 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSG 420
             GYGG+  +PYG  G G G     Q    YG+     G
Sbjct:   221 GYGGYDYSPYGYYGYGPGYDYS-QGSTNYGKSQRRGG 256


>UNIPROTKB|H0Y8G5 [details] [associations]
            symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
            ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
        Length = 261

 Score = 187 (70.9 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
 Identities = 50/157 (31%), Positives = 79/157 (50%)

Query:    88 VGEDEKD-KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGE 146
             VG      +H++         ++FIGGL  D +++DL+D     G+V +  L  D  +G 
Sbjct:    10 VGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGR 69

Query:   147 SKGFAFVSFRSKEFAKKAIDELHSKELKGKTI---RCSLSETKN---RLFIGNVPKNWTE 200
             S+GF FV F+  E   K +D+   K L GK I   R    +TK    ++F+G +  +  E
Sbjct:    70 SRGFGFVLFKESESVDKVMDQKEHK-LNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPE 128

Query:   201 DEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
             ++ R+     G  VE+IEL  D +   R RGF F+ +
Sbjct:   129 EKIREYFGGFGE-VESIELPMDNKTNKR-RGFCFITF 163

 Score = 146 (56.5 bits), Expect = 9.3e-08, P = 9.3e-08
 Identities = 64/235 (27%), Positives = 104/235 (44%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYNNACADYS 246
             ++FIG +  + T+ + +      G  V+ T++L  DP    R+RGF FVL+  +   D  
Sbjct:    31 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKL--DPIT-GRSRGFGFVLFKESESVD-- 85

Query:   247 RQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH 306
              + M     KL+G        DPK           VK ++V  +  +T  EKI+E F   
Sbjct:    86 -KVMDQKEHKLNGKV-----IDPKRAKAMKTK-EPVKKIFVGGLSPDTPEEKIREYFGGF 138

Query:   307 GEVTKVVMP-PGKSGKR-DFGFIHYAERSSALKAVKDTEKYEIDGQV---LEVVLAKPQT 361
             GEV  + +P   K+ KR  F FI + E     K ++  +KY   G     ++V ++K Q 
Sbjct:   139 GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME--KKYHNVGLSKCEIKVAMSKEQY 196

Query:   362 DKKTE----GTFP---YSPGLVPTHLPHAGYGGFAGTPYGSVG---TGFGVAAGF 406
              ++ +    G F       G  P+   + GY  +    YG+ G    G+G   G+
Sbjct:   197 QQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGY 251

 Score = 119 (46.9 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
 Identities = 25/91 (27%), Positives = 50/91 (54%)

Query:    95 KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVS 154
             K A+ +       ++F+GGL  D  EE +R+     G+V  + L  D ++ + +GF F++
Sbjct:   103 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 162

Query:   155 FRSKEFAKKAIDE-LHSKELKGKTIRCSLSE 184
             F+ +E  KK +++  H+  L    I+ ++S+
Sbjct:   163 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 193

 Score = 41 (19.5 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
 Identities = 7/18 (38%), Positives = 9/18 (50%)

Query:   384 GYGGFAGTPYGSVGTGFG 401
             GYGG+ G  Y      +G
Sbjct:   244 GYGGYGGYDYTGYNNYYG 261


>UNIPROTKB|G4N7J4 [details] [associations]
            symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
            RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
            KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
            EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
            Uniprot:G4N7J4
        Length = 479

 Score = 144 (55.7 bits), Expect = 6.9e-07, P = 6.9e-07
 Identities = 45/169 (26%), Positives = 81/169 (47%)

Query:   177 TIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVL 236
             T R +    K  L++G +    TED  R++ E  G  V+ +++I D      N GF  V 
Sbjct:    75 TRRTAPEPNKRALYVGGLDARVTEDVLRQIFETTGH-VQNVKIIPDKNAKGYNYGF--VE 131

Query:   237 YYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTST 296
             Y +   AD + Q  LN   ++  +   ++WA   +T       S    ++V ++ +  + 
Sbjct:   132 YDDPGAADRAMQT-LNGR-RVHQSEIRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVND 189

Query:   297 EKIKELFQRHGEVTKV-VMPPGKSGK-RDFGFIHYAERSSALKAVKDTE 343
             E + + F   G V++  VM   K+G+ R +GF+ + +RS A KA+   +
Sbjct:   190 EVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMD 238

 Score = 139 (54.0 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
 Identities = 27/84 (32%), Positives = 47/84 (55%)

Query:   105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
             N   +F+G L  + ++E L       G V E R+M D ++G S+G+ FV+FR +  A+KA
Sbjct:   174 NHFHIFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKA 233

Query:   165 IDELHSKELKGKTIRCSLSETKNR 188
             +  +  + L  + IRC+ +  K +
Sbjct:   234 LSSMDGEWLGSRAIRCNWANQKGQ 257

 Score = 122 (48.0 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
 Identities = 43/149 (28%), Positives = 61/149 (40%)

Query:   286 YVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY 345
             YV N+   T+   +  LFQ  G V +          R F FI      +A +A+     Y
Sbjct:   305 YVGNLTPYTTANDVVPLFQNFGYVVESRF----QADRGFAFIKMDSHENAAQAICGLNGY 360

Query:   346 EIDGQVLEVVLAKPQTDKKTEGTF-------PYS------PGLVPTHLPHAGYGGFAGTP 392
              ++G+ L+    K +     +G F       P S      PG   T+ P  G G F+G P
Sbjct:   361 NVNGRPLKCSWGKDKNSTNPQGNFDPSQAFSPQSAGGPGFPGTPSTYFPQYG-GQFSG-P 418

Query:   393 YGSVGTGFGVA-AGFQQPMIYGRGPMPSG 420
              G+ G     + AGFQQPM +   P   G
Sbjct:   419 QGNFGPNSAQSPAGFQQPMPFSNPPSAGG 447


>ZFIN|ZDB-GENE-000501-1 [details] [associations]
            symbol:celf1 "cugbp, Elav-like family member 1"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0045495 "pole plasm"
            evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-000501-1 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045495
            GeneTree:ENSGT00560000076837 EMBL:CR318601 EMBL:BX571680
            IPI:IPI00492280 Ensembl:ENSDART00000123170 Uniprot:E7F304
        Length = 535

 Score = 179 (68.1 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
 Identities = 52/190 (27%), Positives = 102/190 (53%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFAKKAI 165
             ++F+G +P+  SE+ LR+L EP G V+E+ +++D+     +SKG  FV++ +++ A +A 
Sbjct:    55 KMFVGQIPRTWSEDQLRELFEPYGAVYEINVLRDRSQNPPQSKGCCFVTYYTRKSALEAQ 114

Query:   166 DELHS-KELKGK----TIRCSLSETKN-----RLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
             + LH+ K L G      ++ + SE  N     +LF+G + K   E++ R +    G  +E
Sbjct:   115 NALHNMKILPGMHHPIQMKPADSEKNNAVEDRKLFVGMISKKCNENDIRLMFSPYGQ-IE 173

Query:   216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADPKSTP 273
                +++ P   SR  G +FV +     A  S  K ++ +  ++G ++P  + +AD +   
Sbjct:   174 ECRILRGPDGLSR--GCAFVTFTARQMAQ-SAIKSMHQSQTMEGCSSPIVVKFADTQKDK 230

Query:   274 DHSAAASQVK 283
             +    A Q++
Sbjct:   231 EQKRIAQQLQ 240

 Score = 164 (62.8 bits), Expect = 5.0e-09, P = 5.0e-09
 Identities = 49/183 (26%), Positives = 87/183 (47%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD-PQNPSRNRGFSFVLYYNNACADYS 246
             ++F+G +P+ W+ED+ R++ E  G  V  I +++D  QNP +++G  FV YY    A   
Sbjct:    55 KMFVGQIPRTWSEDQLRELFEPYG-AVYEINVLRDRSQNPPQSKGCCFVTYYTRKSA-LE 112

Query:   247 RQKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
              Q  L+ N K L G    I    P  +  ++A     + L+V  I    +   I+ +F  
Sbjct:   113 AQNALH-NMKILPGMHHPIQMK-PADSEKNNAVED--RKLFVGMISKKCNENDIRLMFSP 168

Query:   306 HGEVTKVVMPPGKSG-KRDFGFIHYAERSSALKAVKDTEKYE-IDGQVLEVVLAKPQTDK 363
             +G++ +  +  G  G  R   F+ +  R  A  A+K   + + ++G    +V+    T K
Sbjct:   169 YGQIEECRILRGPDGLSRGCAFVTFTARQMAQSAIKSMHQSQTMEGCSSPIVVKFADTQK 228

Query:   364 KTE 366
               E
Sbjct:   229 DKE 231

 Score = 125 (49.1 bits), Expect = 0.00010, P = 0.00010
 Identities = 25/84 (29%), Positives = 48/84 (57%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P G+ +FI  LP++  ++DL  +  P G+V   ++  DK++  SK F FVS+ +   ++ 
Sbjct:   447 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVISAKVFIDKQTNLSKCFGFVSYDNPVSSQA 506

Query:   164 AIDELHSKELKGKTIRCSLSETKN 187
             AI  ++  ++  K ++  L  +KN
Sbjct:   507 AIQSMNGFQIGMKRLKVQLKRSKN 530

 Score = 79 (32.9 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
 Identities = 24/96 (25%), Positives = 46/96 (47%)

Query:   276 SAAASQVKA-----LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIH 328
             SAA SQ +      L++ ++P     + + ++F   G V   KV +    +  + FGF+ 
Sbjct:   438 SAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVISAKVFIDKQTNLSKCFGFVS 497

Query:   329 YAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364
             Y    S+  A++    ++I  + L+V L + + D K
Sbjct:   498 YDNPVSSQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 533


>UNIPROTKB|Q5ZIH1 [details] [associations]
            symbol:HNRNPD "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
            complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
            evidence=IEA] [GO:0043488 "regulation of mRNA stability"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
            eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
            UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
            OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
            EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
            STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
            KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
        Length = 257

 Score = 182 (69.1 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
 Identities = 47/135 (34%), Positives = 72/135 (53%)

Query:   109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
             +FIGGL  D +++DL+D     G+V +  L  D  +G S+GF FV F+  E   K +D+ 
Sbjct:     1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60

Query:   169 HSKELKGKTI---RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKD 222
               K L GK I   R    +TK    ++F+G +  +  E++ R+     G  VE+IEL  D
Sbjct:    61 EHK-LNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGAFGE-VESIELPMD 118

Query:   223 PQNPSRNRGFSFVLY 237
              +   R RGF F+ +
Sbjct:   119 NKTNKR-RGFCFITF 132

 Score = 145 (56.1 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
 Identities = 64/234 (27%), Positives = 103/234 (44%)

Query:   189 LFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
             +FIG +  + T+ + +      G  V+ T++L  DP    R+RGF FVL+  +   D   
Sbjct:     1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKL--DPIT-GRSRGFGFVLFKESESVD--- 54

Query:   248 QKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG 307
             + M     KL+G        DPK           VK ++V  +  +T  EKI+E F   G
Sbjct:    55 KVMDQKEHKLNGKV-----IDPKRAKAMKTK-EPVKKIFVGGLSPDTPEEKIREYFGAFG 108

Query:   308 EVTKVVMP-PGKSGKR-DFGFIHYAERSSALKAVKDTEKYEIDGQV---LEVVLAKPQTD 362
             EV  + +P   K+ KR  F FI + E     K ++  +KY   G     ++V ++K Q  
Sbjct:   109 EVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME--KKYHNVGLSKCEIKVAMSKEQYQ 166

Query:   363 KKTE----GTF---PYSPGLVPTHLPHAGYGGFAGTPYGSVG---TGFGVAAGF 406
             ++ +    G F       G  P+   + GY  +    YG+ G    G+G   G+
Sbjct:   167 QQQQWGSRGGFVGRARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGY 220

 Score = 120 (47.3 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
 Identities = 25/91 (27%), Positives = 50/91 (54%)

Query:    95 KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVS 154
             K A+ +       ++F+GGL  D  EE +R+     G+V  + L  D ++ + +GF F++
Sbjct:    72 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFIT 131

Query:   155 FRSKEFAKKAIDE-LHSKELKGKTIRCSLSE 184
             F+ +E  KK +++  H+  L    I+ ++S+
Sbjct:   132 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 162

 Score = 48 (22.0 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAGFQQPMIYGR 414
             GYGG+ G  Y      +G +    Q   YG+
Sbjct:   213 GYGGYGGYDYTGYNNYYGYSDYSNQQSGYGK 243


>WB|WBGene00001340 [details] [associations]
            symbol:etr-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
            "body morphogenesis" evidence=IMP] [GO:0048477 "oogenesis"
            evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
            "locomotion" evidence=IMP] [GO:0040002 "collagen and
            cuticulin-based cuticle development" evidence=IMP] [GO:0000003
            "reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
            evidence=IMP] [GO:0061199 "striated muscle contraction involved in
            embryonic body morphogenesis" evidence=IMP] [GO:0008340
            "determination of adult lifespan" evidence=IMP] [GO:0005634
            "nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008340
            GO:GO:0009792 GO:GO:0018991 GO:GO:0006915 GO:GO:0002119
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
            GO:GO:0048477 GO:GO:0003676 GO:GO:0040002 KO:K13207
            HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837 EMBL:FO081419
            UniGene:Cel.5079 GeneID:173401 KEGG:cel:CELE_T01D1.2
            UCSC:T01D1.2a.1 CTD:173401 NextBio:879497 RefSeq:NP_001122631.1
            ProteinModelPortal:A8DYS0 SMR:A8DYS0 IntAct:A8DYS0 STRING:A8DYS0
            EnsemblMetazoa:T01D1.2f.1 EnsemblMetazoa:T01D1.2f.2
            EnsemblMetazoa:T01D1.2f.3 EnsemblMetazoa:T01D1.2f.4
            EnsemblMetazoa:T01D1.2f.5 EnsemblMetazoa:T01D1.2f.6
            WormBase:T01D1.2f InParanoid:A8DYS0 ArrayExpress:A8DYS0
            Uniprot:A8DYS0
        Length = 588

 Score = 196 (74.1 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
 Identities = 52/176 (29%), Positives = 96/176 (54%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++F+G +P+  +E D R L E  G VF   +++DK +  SKG  FV+F  ++ A +A   
Sbjct:    56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEAQGA 115

Query:   168 LHS-KELKGK--TIRCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
             LH+ K ++G    ++   ++T+NR    LFIG + K   E+  R++    G  +E   ++
Sbjct:   116 LHNIKVIEGMHHPVQMKPADTENRNERKLFIGQLSKKHNEENLREIFAKFGH-IEDCSVL 174

Query:   221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG-NTP-TISWADPKSTPD 274
             +D    SR  G +FV + N +CA  + ++M ++   ++G + P  + +AD +   D
Sbjct:   175 RDQDGKSR--GCAFVTFTNRSCAVVATKEMHHSQ-TMEGCSAPLVVKFADTQKDKD 227

 Score = 132 (51.5 bits), Expect = 2.0e-05, P = 2.0e-05
 Identities = 43/181 (23%), Positives = 86/181 (47%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
             ++F+G +P+ W E + R++ E  G  V +  +++D ++   ++G  FV +Y+   A    
Sbjct:    56 KMFVGQIPRQWNETDCRRLFEKYG-SVFSCNILRD-KSTQASKGCCFVTFYHRKDA-IEA 112

Query:   248 QKMLNANFK-LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH 306
             Q  L+ N K ++G    +    P  T + +      + L++  +    + E ++E+F + 
Sbjct:   113 QGALH-NIKVIEGMHHPVQMK-PADTENRNE-----RKLFIGQLSKKHNEENLREIFAKF 165

Query:   307 GEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYE-IDG--QVLEVVLAKPQTD 362
             G +    +   + GK R   F+ +  RS A+ A K+    + ++G    L V  A  Q D
Sbjct:   166 GHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGCSAPLVVKFADTQKD 225

Query:   363 K 363
             K
Sbjct:   226 K 226

 Score = 118 (46.6 bits), Expect = 0.00070, P = 0.00070
 Identities = 29/102 (28%), Positives = 50/102 (49%)

Query:    85 TASVGEDEKDKHAQLLA----LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMK 140
             T  VG       AQ++       P+G+ +FI  LP+D  + DL +   P G +   ++  
Sbjct:   477 TGGVGVQATTSAAQMVGNGDVKGPDGANLFIYHLPQDFGDSDLINTFAPFGGILSAKVFI 536

Query:   141 DKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182
             DK +  SK F FVS+ + + A  AI  ++  ++  K ++  L
Sbjct:   537 DKVTNLSKCFGFVSYENAQSATNAISAMNGFQIGSKRLKVQL 578

 Score = 114 (45.2 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
 Identities = 25/72 (34%), Positives = 47/72 (65%)

Query:   105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
             N  ++FIG L K  +EE+LR++    G + +  +++D++ G+S+G AFV+F ++  A  A
Sbjct:   140 NERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQD-GKSRGCAFVTFTNRSCAVVA 198

Query:   165 IDELH-SKELKG 175
               E+H S+ ++G
Sbjct:   199 TKEMHHSQTMEG 210

 Score = 61 (26.5 bits), Expect = 1.6e-14, Sum P(2) = 1.6e-14
 Identities = 17/74 (22%), Positives = 33/74 (44%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
             L++ ++P +     +   F   G +   KV +    +  + FGF+ Y    SA  A+   
Sbjct:   505 LFIYHLPQDFGDSDLINTFAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAM 564

Query:   343 EKYEIDGQVLEVVL 356
               ++I  + L+V L
Sbjct:   565 NGFQIGSKRLKVQL 578


>RGD|1309950 [details] [associations]
            symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
            GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
            eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
            EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
            UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
            PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
            NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
        Length = 322

 Score = 180 (68.4 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
 Identities = 52/177 (29%), Positives = 87/177 (49%)

Query:   101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
             + P +G+++FIGGL  D S++DL +     G+V +  +  D  +G S+GF FV F+    
Sbjct:    45 SFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAAS 104

Query:   161 AKKAIDELHSKELKGKTI---RCSL---SETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
               K + EL   +L GK I   R       E   ++F+G +  + +E++ ++     G  +
Sbjct:   105 VDKVL-ELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE-I 162

Query:   215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT-ISWADPK 270
             E IEL  D +   R RGF F+ Y +        +K+L + +   G+    I  A PK
Sbjct:   163 ENIELPMDTKTNER-RGFCFITYTDEEPV----KKLLESRYHQIGSGKCEIKVAQPK 214

 Score = 144 (55.7 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
 Identities = 52/184 (28%), Positives = 89/184 (48%)

Query:   181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYN 239
             S   + N++FIG +  + ++ +  + +   G  V+ TI+   DP    R+RGF FVL+ +
Sbjct:    45 SFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKT--DPVT-GRSRGFGFVLFKD 101

Query:   240 NACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEK 298
              A  D    K+L     KLDG        DPK            K ++V  +  +TS E+
Sbjct:   102 AASVD----KVLELKEHKLDGKL-----IDPKRAKALKGKEPP-KKVFVGGLSPDTSEEQ 151

Query:   299 IKELFQRHGEVTKVVMPPG-KSG-KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356
             IKE F   GE+  + +P   K+  +R F FI Y +    +K + ++  ++I     E+ +
Sbjct:   152 IKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEP-VKKLLESRYHQIGSGKCEIKV 210

Query:   357 AKPQ 360
             A+P+
Sbjct:   211 AQPK 214

 Score = 66 (28.3 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
 Identities = 16/43 (37%), Positives = 20/43 (46%)

Query:   382 HAGYGGF--AGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMH 422
             ++GYGG+   G  YGS G G G      Q   YG+     G H
Sbjct:   273 YSGYGGYDYTGYNYGSYGYGQGYTDYSGQQSTYGKASRGGGNH 315


>UNIPROTKB|Q3SWU3 [details] [associations]
            symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
            D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
            GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
            GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
            eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
            EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
            UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
            PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
            NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
        Length = 322

 Score = 180 (68.4 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
 Identities = 52/177 (29%), Positives = 87/177 (49%)

Query:   101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
             + P +G+++FIGGL  D S++DL +     G+V +  +  D  +G S+GF FV F+    
Sbjct:    45 SFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAAS 104

Query:   161 AKKAIDELHSKELKGKTI---RCSL---SETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
               K + EL   +L GK I   R       E   ++F+G +  + +E++ ++     G  +
Sbjct:   105 VDKVL-ELKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE-I 162

Query:   215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT-ISWADPK 270
             E IEL  D +   R RGF F+ Y +        +K+L + +   G+    I  A PK
Sbjct:   163 ENIELPMDTKTNER-RGFCFITYTDEEPV----KKLLESRYHQIGSGKCEIKVAQPK 214

 Score = 144 (55.7 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
 Identities = 52/184 (28%), Positives = 89/184 (48%)

Query:   181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYN 239
             S   + N++FIG +  + ++ +  + +   G  V+ TI+   DP    R+RGF FVL+ +
Sbjct:    45 SFPTSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKT--DPVT-GRSRGFGFVLFKD 101

Query:   240 NACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEK 298
              A  D    K+L     KLDG        DPK            K ++V  +  +TS E+
Sbjct:   102 AASVD----KVLELKEHKLDGKL-----IDPKRAKALKGKEPP-KKVFVGGLSPDTSEEQ 151

Query:   299 IKELFQRHGEVTKVVMPPG-KSG-KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356
             IKE F   GE+  + +P   K+  +R F FI Y +    +K + ++  ++I     E+ +
Sbjct:   152 IKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEP-VKKLLESRYHQIGSGKCEIKV 210

Query:   357 AKPQ 360
             A+P+
Sbjct:   211 AQPK 214

 Score = 66 (28.3 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
 Identities = 16/43 (37%), Positives = 20/43 (46%)

Query:   382 HAGYGGF--AGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMH 422
             ++GYGG+   G  YGS G G G      Q   YG+     G H
Sbjct:   273 YSGYGGYDYTGYNYGSYGYGQGYTDYSGQQSTYGKASRGGGNH 315


>TAIR|locus:2058573 [details] [associations]
            symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
            "translation initiation factor activity" evidence=ISS] [GO:0046686
            "response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
            GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
            KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
            EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
            UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
            STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
            EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
            TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
            ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
        Length = 662

 Score = 217 (81.4 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
 Identities = 69/274 (25%), Positives = 134/274 (48%)

Query:   109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
             +++G L  + ++  L D    +  V  VR+ +D  +  S G+ +V++ + + A+KA+ +L
Sbjct:    48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107

Query:   169 HSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIK-DP 223
             +   L GK IR + S    +  R  +GN+  KN  +    K + +   G  TI   K   
Sbjct:   108 NYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVAT 167

Query:   224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVK 283
              +  ++RG+ FV +     A  + +K+   N K+  N   I         +  +AA ++K
Sbjct:   168 DHMGQSRGYGFVQFDTEDSAKNAIEKL---NGKVL-NDKQIFVGPFLRKEERESAADKMK 223

Query:   284 A--LYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGKRDFGFIHYAERSSALKAVK 340
                +YVKN+ + T+ +++K  F ++G ++  VVM  G    R FGF+++     A +AV+
Sbjct:   224 FTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVE 283

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPG 374
                  + D +   V  A+ +++++ E +  Y  G
Sbjct:   284 ALNGKKFDDKEWYVGKAQKKSERELELSRRYEQG 317

 Score = 155 (59.6 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
 Identities = 63/245 (25%), Positives = 111/245 (45%)

Query:   189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
             +++ N+ +  T+DE +      G  + +  +++D     ++R F FV + N    D +R 
Sbjct:   227 VYVKNLSEATTDDELKTTFGQYG-SISSAVVMRD--GDGKSRCFGFVNFENPE--DAARA 281

Query:   249 -KMLNANFKLDGNTPTISWADPKSTPD----------HSAAASQVKAL--YVKNIPDNTS 295
              + LN   K D     +  A  KS  +           S   ++   L  YVKN+ D  +
Sbjct:   282 VEALNGK-KFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVT 340

Query:   296 TEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLE 353
              EK++ELF   G +T  KV+  P  + K   GF+ ++  S A + + +     + G+ L 
Sbjct:   341 DEKLRELFAEFGTITSCKVMRDPSGTSKGS-GFVAFSAASEASRVLNEMNGKMVGGKPLY 399

Query:   354 VVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYG 413
             V LA+ + +++ +    +S  + P  +P  G       P   + TG G A G  Q + YG
Sbjct:   400 VALAQRKEERRAKLQAQFSQ-MRPAFIPGVG-------PRMPIFTG-G-APGLGQQIFYG 449

Query:   414 RGPMP 418
             +GP P
Sbjct:   450 QGPPP 454

 Score = 37 (18.1 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
 Identities = 8/12 (66%), Positives = 9/12 (75%)

Query:   415 GPMPSGMHMVPM 426
             GPMP GM  VP+
Sbjct:   535 GPMPGGM--VPV 544


>UNIPROTKB|A6H6Y0 [details] [associations]
            symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
            [GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
            HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
            OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
            UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
            STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
            Uniprot:A6H6Y0
        Length = 355

 Score = 197 (74.4 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
 Identities = 59/187 (31%), Positives = 92/187 (49%)

Query:    57 AGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPK 116
             AG +E   SAE+     D    EE+E  + S       +H++         ++FIGGL  
Sbjct:    53 AGGTE-GSSAESEGAKIDASKNEEDEGHSNS-----SPRHSEAATAQREEWKMFIGGLSW 106

Query:   117 DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK 176
             D +++DL+D     G+V +  L  D  +G S+GF FV F+  E   K +D+   K L GK
Sbjct:   107 DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHK-LNGK 165

Query:   177 TI---RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNR 230
              I   R    +TK    ++F+G +  +  E++ R+     G  VE+IEL  D +   R R
Sbjct:   166 VIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPMDNKTNKR-R 223

Query:   231 GFSFVLY 237
             GF F+ +
Sbjct:   224 GFCFITF 230

 Score = 158 (60.7 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
 Identities = 73/280 (26%), Positives = 123/280 (43%)

Query:   144 SGESKGFAFVSFRSK-EFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDE 202
             +G ++G +  S  +K + +K   DE HS      +   +    + ++FIG +  + T+ +
Sbjct:    53 AGGTEGSSAESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKD 112

Query:   203 FRKVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261
              +      G  V+ T++L  DP    R+RGF FVL+  +   D   + M     KL+G  
Sbjct:   113 LKDYFSKFGEVVDCTLKL--DPIT-GRSRGFGFVLFKESESVD---KVMDQKEHKLNGKV 166

Query:   262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP-PGKSG 320
                   DPK           VK ++V  +  +T  EKI+E F   GEV  + +P   K+ 
Sbjct:   167 -----IDPKRAKAMKTK-EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTN 220

Query:   321 KR-DFGFIHYAERSSALKAVKDTEKYEIDGQV---LEVVLAKPQTDKKTE----GTFP-- 370
             KR  F FI + E     K ++  +KY   G     ++V ++K Q  ++ +    G F   
Sbjct:   221 KRRGFCFITFKEEEPVKKIME--KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGR 278

Query:   371 -YSPGLVPTHLPHAGYGGFAGTPYGSVG---TGFGVAAGF 406
                 G  P+   + GY  +    YG+ G    G+G   G+
Sbjct:   279 ARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGY 318

 Score = 119 (46.9 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
 Identities = 25/91 (27%), Positives = 50/91 (54%)

Query:    95 KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVS 154
             K A+ +       ++F+GGL  D  EE +R+     G+V  + L  D ++ + +GF F++
Sbjct:   170 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229

Query:   155 FRSKEFAKKAIDE-LHSKELKGKTIRCSLSE 184
             F+ +E  KK +++  H+  L    I+ ++S+
Sbjct:   230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260

 Score = 47 (21.6 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
 Identities = 10/31 (32%), Positives = 13/31 (41%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAGFQQPMIYGR 414
             GYGG+ G  Y      +G      Q   YG+
Sbjct:   311 GYGGYGGYDYTGYNNYYGYGDYSNQQSGYGK 341


>ZFIN|ZDB-GENE-050208-746 [details] [associations]
            symbol:celf5 "cugbp, Elav-like family member 5"
            species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
            EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
            Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
        Length = 597

 Score = 178 (67.7 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
 Identities = 45/142 (31%), Positives = 84/142 (59%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++FIG +P++  E+DL+ L E  G + E+ ++KD+ +G  KG AF+++ ++E A KA + 
Sbjct:   137 KLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKAQNA 196

Query:   168 LHS-KELKGKT----IRCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
             LH  K L G T    ++ + SE++    +LF+G + K  TE++  ++ E  G  +E   +
Sbjct:   197 LHEQKTLPGMTRPIQVKPADSESRGEDRKLFVGMLNKQQTEEDVYRLFEPYGV-IEECTV 255

Query:   220 IKDPQNPSRNRGFSFVLYYNNA 241
             ++ P   S+  G +FV +  +A
Sbjct:   256 LRGPDGNSK--GCAFVKFSTHA 275

 Score = 109 (43.4 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
 Identities = 25/65 (38%), Positives = 38/65 (58%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++F+G L K  +EED+  L EP G + E  +++  + G SKG AFV F +   A+ AI  
Sbjct:   225 KLFVGMLNKQQTEEDVYRLFEPYGVIEECTVLRGPD-GNSKGCAFVKFSTHAEAQSAISA 283

Query:   168 LHSKE 172
             LH  +
Sbjct:   284 LHGSQ 288

 Score = 79 (32.9 bits), Expect = 2.8e-14, Sum P(2) = 2.8e-14
 Identities = 19/78 (24%), Positives = 41/78 (52%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
             L++ ++P      ++ ++F   G V  +KV M    +  + FGF+ +   +SA  A++  
Sbjct:   514 LFIYHLPQEFGDNELMQMFLPFGTVISSKVFMDRATNQSKCFGFVSFDNPASAQAAIQAM 573

Query:   343 EKYEIDGQVLEVVLAKPQ 360
               ++I  + L+V L +P+
Sbjct:   574 NGFQIGMKRLKVQLKRPK 591


>UNIPROTKB|F1P5I0 [details] [associations]
            symbol:LOC100859627 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
            EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
            EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
            IPI:IPI00971390 Ensembl:ENSGALT00000015053 Uniprot:F1P5I0
        Length = 288

 Score = 184 (69.8 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
 Identities = 62/226 (27%), Positives = 103/226 (45%)

Query:   184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
             E   +LFIG +    T+D  R+  E  G   + + +++DPQ   R+RGF FV Y   +C 
Sbjct:     6 EQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCV-VMRDPQT-KRSRGFGFVTY---SCV 60

Query:   244 DYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303
             +     M     K+DG       A  +       A   VK ++V  I ++T    ++E F
Sbjct:    61 EEVDAAMSARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYF 120

Query:   304 QRHGEVTKV-VMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYE-IDGQVLEVVLAKPQ 360
             +++G++  + VM   +SGK R F F+ + +  +  K V   +KY  I+G   EV  A  +
Sbjct:   121 EKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQKYHTINGHNCEVKKALSK 178

Query:   361 TDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGF 406
              + +T  +     G     +    +GG  G  +G  G  FG   G+
Sbjct:   179 QEMQTASS-QRGKGGSGNFMGRGNFGGGGGN-FGR-GGNFGGRGGY 221

 Score = 145 (56.1 bits), Expect = 3.2e-09, Sum P(2) = 3.2e-09
 Identities = 41/154 (26%), Positives = 81/154 (52%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P    ++FIGGL  + +++ LR+  E  G + +  +M+D ++  S+GF FV++   E   
Sbjct:     5 PEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVD 64

Query:   163 KAIDELHSKELKGKTI--RCSLSE----------TKNRLFIGNVPKNWTEDEFRKVIEDV 210
              A+     K + G+ +  + ++S           T  ++F+G + ++  E   R+  E  
Sbjct:    65 AAMSARPHK-VDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKY 123

Query:   211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244
             G  +ETIE+++D Q+  + RGF+FV + ++   D
Sbjct:   124 GK-IETIEVMEDRQS-GKKRGFAFVTFDDHDTVD 155

 Score = 123 (48.4 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
 Identities = 25/89 (28%), Positives = 50/89 (56%)

Query:    83 KPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDK 142
             +P  +V  ++  K    L +     ++F+GG+ +D  E +LR+  E  G +  + +M+D+
Sbjct:    80 EPKRAVSREDSVKPGAHLTV----KKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDR 135

Query:   143 ESGESKGFAFVSFRSKEFAKK-AIDELHS 170
             +SG+ +GFAFV+F   +   K  + + H+
Sbjct:   136 QSGKKRGFAFVTFDDHDTVDKIVVQKYHT 164

 Score = 54 (24.1 bits), Expect = 2.9e-14, Sum P(2) = 2.9e-14
 Identities = 17/39 (43%), Positives = 18/39 (46%)

Query:   384 GYGGFAGTPYGSVGT--GFGVAAGFQQPMIYGRGPMPSG 420
             GY GF    YG  G    FG  +G QQ   YG  PM  G
Sbjct:   239 GYNGFGDGNYGGSGNYNDFGNYSG-QQQSNYG--PMKGG 274


>UNIPROTKB|E2RIX2 [details] [associations]
            symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0043488 "regulation of mRNA stability"
            evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
            GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
            InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
            RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
            KEGG:cfa:478450 Uniprot:E2RIX2
        Length = 355

 Score = 195 (73.7 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
 Identities = 59/187 (31%), Positives = 92/187 (49%)

Query:    57 AGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPK 116
             AG +E   SAE+     D    EE+E  + S       +H++         ++FIGGL  
Sbjct:    53 AGGTEGG-SAESEGAKIDASKNEEDEGHSNS-----SPRHSEAATAQREEWKMFIGGLSW 106

Query:   117 DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK 176
             D +++DL+D     G+V +  L  D  +G S+GF FV F+  E   K +D+   K L GK
Sbjct:   107 DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHK-LNGK 165

Query:   177 TI---RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNR 230
              I   R    +TK    ++F+G +  +  E++ R+     G  VE+IEL  D +   R R
Sbjct:   166 VIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPMDNKTNKR-R 223

Query:   231 GFSFVLY 237
             GF F+ +
Sbjct:   224 GFCFITF 230

 Score = 157 (60.3 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
 Identities = 73/280 (26%), Positives = 123/280 (43%)

Query:   144 SGESKGFAFVSFRSK-EFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDE 202
             +G ++G +  S  +K + +K   DE HS      +   +    + ++FIG +  + T+ +
Sbjct:    53 AGGTEGGSAESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKD 112

Query:   203 FRKVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261
              +      G  V+ T++L  DP    R+RGF FVL+  +   D   + M     KL+G  
Sbjct:   113 LKDYFSKFGEVVDCTLKL--DPIT-GRSRGFGFVLFKESESVD---KVMDQKEHKLNGKV 166

Query:   262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP-PGKSG 320
                   DPK           VK ++V  +  +T  EKI+E F   GEV  + +P   K+ 
Sbjct:   167 -----IDPKRAKAMKTK-EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTN 220

Query:   321 KR-DFGFIHYAERSSALKAVKDTEKYEIDGQV---LEVVLAKPQTDKKTE----GTFP-- 370
             KR  F FI + E     K ++  +KY   G     ++V ++K Q  ++ +    G F   
Sbjct:   221 KRRGFCFITFKEEEPVKKIME--KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGR 278

Query:   371 -YSPGLVPTHLPHAGYGGFAGTPYGSVG---TGFGVAAGF 406
                 G  P+   + GY  +    YG+ G    G+G   G+
Sbjct:   279 ARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGY 318

 Score = 119 (46.9 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
 Identities = 25/91 (27%), Positives = 50/91 (54%)

Query:    95 KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVS 154
             K A+ +       ++F+GGL  D  EE +R+     G+V  + L  D ++ + +GF F++
Sbjct:   170 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229

Query:   155 FRSKEFAKKAIDE-LHSKELKGKTIRCSLSE 184
             F+ +E  KK +++  H+  L    I+ ++S+
Sbjct:   230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260

 Score = 47 (21.6 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
 Identities = 10/31 (32%), Positives = 13/31 (41%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAGFQQPMIYGR 414
             GYGG+ G  Y      +G      Q   YG+
Sbjct:   311 GYGGYGGYDYTGYNNYYGYGDYSNQQSGYGK 341


>UNIPROTKB|Q99729 [details] [associations]
            symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
            A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
            [GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
            evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
            evidence=ISS] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
            evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=ISS]
            [GO:0043565 "sequence-specific DNA binding" evidence=ISS]
            [GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
            EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
            HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
            EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
            EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
            IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
            PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
            UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
            SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
            PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
            PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
            Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
            KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
            GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
            neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
            OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
            EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
            ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
            Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
        Length = 332

 Score = 186 (70.5 bits), Expect = 7.3e-14, Sum P(2) = 7.3e-14
 Identities = 50/173 (28%), Positives = 92/173 (53%)

Query:   105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
             +  ++F+GGL  D S++DL+D     G+V +  +  D  +G S+GF F+ F+     +K 
Sbjct:    67 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKV 126

Query:   165 IDELHSKELKGKTI--RCSLSETKN---RLFIGNV-PKNWTEDEFRKVIEDVGPGVETIE 218
             +D+   + L G+ I  + +++  K+   ++F+G + P++ TE++ R+   + G  +E IE
Sbjct:   127 LDQKEHR-LDGRVIDPKKAMAMKKDPVKKIFVGGLNPESPTEEKIREYFGEFGE-IEAIE 184

Query:   219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK 270
             L  DP+   R RGF F+ +          +K+L   F  + G+   I  A PK
Sbjct:   185 LPMDPKLNKR-RGFVFITFKEEEPV----KKVLEKKFHTVSGSKCEIKVAQPK 232

 Score = 163 (62.4 bits), Expect = 2.3e-09, P = 2.3e-09
 Identities = 72/272 (26%), Positives = 122/272 (44%)

Query:   174 KGKTIRCSLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRG 231
             +G  I  S +E    ++F+G +  + ++ + +      G  V+ TI++  DP N  R+RG
Sbjct:    55 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM--DP-NTGRSRG 111

Query:   232 FSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNI 290
             F F+L+ + A    S +K+L+    +LDG        DPK     +     VK ++V  +
Sbjct:   112 FGFILFKDAA----SVEKVLDQKEHRLDGRV-----IDPKKAM--AMKKDPVKKIFVGGL 160

Query:   291 -PDNTSTEKIKELFQRHGEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDTEKYEI 347
              P++ + EKI+E F   GE+  + +P  P  + +R F FI + E    +K V + + + +
Sbjct:   161 NPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEP-VKKVLEKKFHTV 219

Query:   348 DGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFG----VA 403
              G   E+ +A+P+   + +       G        +G GG  G    S   G+G      
Sbjct:   220 SGSKCEIKVAQPKEVYQQQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWNQGYGNYWNQG 279

Query:   404 AGFQQPMIYGRGPMPSGMHMVPMVLPDGQIGY 435
              G+QQ    G GP   G    P     G  GY
Sbjct:   280 YGYQQ----GYGPGYGGYDYSPY----GYYGY 303

 Score = 54 (24.1 bits), Expect = 7.3e-14, Sum P(2) = 7.3e-14
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSG 420
             GYGG+  +PYG  G G G     Q    YG+     G
Sbjct:   289 GYGGYDYSPYGYYGYGPGYDYS-QGSTNYGKSQRRGG 324


>ZFIN|ZDB-GENE-040704-9 [details] [associations]
            symbol:elavl2 "ELAV (embryonic lethal, abnormal
            vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
            rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
            IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
            Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
        Length = 388

 Score = 178 (67.7 bits), Expect = 8.6e-14, Sum P(2) = 8.6e-14
 Identities = 55/192 (28%), Positives = 99/192 (51%)

Query:   104 PNGSE-----VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSK 158
             PNGSE     + +  LP++ ++E+L+ L   IG++   +L++DK +G+S G+ FV++   
Sbjct:    60 PNGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEP 119

Query:   159 EFAKKAIDELHSKELKGKTIRCSLSETKN------RLFIGNVPKNWTEDEFRKVIEDVGP 212
             + A+KAI+ L+   L+ KTI+ S +   +       L++  +PK  T+ E  ++    G 
Sbjct:   120 KDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQFGR 179

Query:   213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT-P-TISWADPK 270
              + T  ++ D Q    +RG  F+ +     A+ +  K LN   K  G T P T+ +A+  
Sbjct:   180 -IITSRILVD-QVTGVSRGVGFIRFDRRVEAEEAI-KGLNGQ-KPPGATEPITVKFANNP 235

Query:   271 STPDHSAAASQV 282
             S     A  S +
Sbjct:   236 SQKSSQALLSHL 247

 Score = 143 (55.4 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 41/159 (25%), Positives = 83/159 (52%)

Query:   184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
             ++K  L +  +P+N T++E + +   +G  +E+ +L++D +   ++ G+ FV Y     A
Sbjct:    65 DSKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYMEPKDA 122

Query:   244 DYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303
             + +    LN   +L   T  +S+A P      S+A+ +   LYV  +P   + +++++LF
Sbjct:   123 EKAINT-LNG-LRLQTKTIKVSYARP------SSASIRDANLYVSGLPKTMTQKELEQLF 174

Query:   304 QRHGEV-TKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
              + G + T  ++    +G  R  GFI +  R  A +A+K
Sbjct:   175 SQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIK 213

 Score = 67 (28.6 bits), Expect = 8.6e-14, Sum P(2) = 8.6e-14
 Identities = 20/81 (24%), Positives = 36/81 (44%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK-RDFGFIHYAERSSALKAVKDT 342
             ++V N+  +     + ++F   G VT V V+    + K + FGF+       A  A+   
Sbjct:   307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366

Query:   343 EKYEIDGQVLEVVLAKPQTDK 363
               Y +  +VL+V     +T K
Sbjct:   367 NGYRLGDRVLQVSFKTNKTHK 387


>ZFIN|ZDB-GENE-070424-97 [details] [associations]
            symbol:hnrnpd "heterogeneous nuclear
            ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0008150 "biological_process"
            evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
            OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
            IPI:IPI00512852 Ensembl:ENSDART00000101414
            Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
        Length = 314

 Score = 186 (70.5 bits), Expect = 9.1e-14, Sum P(2) = 9.1e-14
 Identities = 55/183 (30%), Positives = 89/183 (48%)

Query:    62 KDQSAEANRNDDDTPHVEEEEK-PTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASE 120
             +D + +   NDD     EE+        GE E  K          G ++F+GGL  D ++
Sbjct:     9 EDPTMKMEENDDGEGFGEEQMSGDNGGQGEAEGSKIDASKNEEDEG-KMFVGGLSWDTTK 67

Query:   121 EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI-- 178
             +DL+D     G+V +  L  D  +G S+GF FV F+  E  +K I +   K L GK I  
Sbjct:    68 KDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVEKVITQKEHK-LNGKVIDP 126

Query:   179 -RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSF 234
              +    +TK    ++F+G +  +  E++ R+  +  G  VE+IEL  + +   R RGF F
Sbjct:   127 KKAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFDAYGE-VESIELPMENKTNKR-RGFCF 184

Query:   235 VLY 237
             + +
Sbjct:   185 ITF 187

 Score = 159 (61.0 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
 Identities = 66/239 (27%), Positives = 109/239 (45%)

Query:   172 ELKGKTIRCSLSET-KNRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRN 229
             E +G  I  S +E  + ++F+G +  + T+ + +      G  V+ T++L  DP    R+
Sbjct:    38 EAEGSKIDASKNEEDEGKMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKL--DPLT-GRS 94

Query:   230 RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKN 289
             RGF FVL+     A+   + +     KL+G        DPK           VK ++V  
Sbjct:    95 RGFGFVLFKE---AESVEKVITQKEHKLNGKV-----IDPKKAKAMKTK-EPVKKIFVGG 145

Query:   290 IPDNTSTEKIKELFQRHGEVTKVVMP-PGKSGKR-DFGFIHYAERSSALKAVKDTEKYEI 347
             +  +T  EKI+E F  +GEV  + +P   K+ KR  F FI + E     K ++  +KY  
Sbjct:   146 LSPDTPEEKIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEPVKKIME--KKYHN 203

Query:   348 DGQV---LEVVLAKPQTDKKTE--GTFPY-SPGLV---PTHLPHAGYGGFAGTPYGSVG 397
              G     ++V ++K Q  ++ +  G   Y S G     P    + GYG +    YG+ G
Sbjct:   204 IGLSKCEVKVAMSKEQYQQQQQWGGRGGYTSRGRGRGGPNQNWNQGYGNYWNQGYGNYG 262

 Score = 117 (46.2 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
 Identities = 28/107 (26%), Positives = 58/107 (54%)

Query:    79 EEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRL 138
             ++E K    V + +K K A     P    ++F+GGL  D  EE +R+  +  G+V  + L
Sbjct:   114 QKEHKLNGKVIDPKKAK-AMKTKEPVK--KIFVGGLSPDTPEEKIREYFDAYGEVESIEL 170

Query:   139 MKDKESGESKGFAFVSFRSKEFAKKAIDE-LHSKELKGKTIRCSLSE 184
               + ++ + +GF F++F+ +E  KK +++  H+  L    ++ ++S+
Sbjct:   171 PMENKTNKRRGFCFITFKEEEPVKKIMEKKYHNIGLSKCEVKVAMSK 217

 Score = 51 (23.0 bits), Expect = 9.1e-14, Sum P(2) = 9.1e-14
 Identities = 11/37 (29%), Positives = 14/37 (37%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSG 420
             GYGG+ G  Y      +G      Q   YG+     G
Sbjct:   270 GYGGYGGYDYSGYNNYYGYGDYSNQQSGYGKSQRRGG 306


>UNIPROTKB|H0YA96 [details] [associations]
            symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
            ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
        Length = 210

 Score = 184 (69.8 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 47/136 (34%), Positives = 73/136 (53%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++FIGGL  D +++DL+D     G+V +  L  D  +G S+GF FV F+  E   K +D+
Sbjct:     2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61

Query:   168 LHSKELKGKTI---RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
                K L GK I   R    +TK    ++F+G +  +  E++ R+     G  VE+IEL  
Sbjct:    62 KEHK-LNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPM 119

Query:   222 DPQNPSRNRGFSFVLY 237
             D +   R RGF F+ +
Sbjct:   120 DNKTNKR-RGFCFITF 134

 Score = 135 (52.6 bits), Expect = 6.3e-07, P = 6.3e-07
 Identities = 52/185 (28%), Positives = 86/185 (46%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYNNACADYS 246
             ++FIG +  + T+ + +      G  V+ T++L  DP    R+RGF FVL+  +   D  
Sbjct:     2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKL--DPIT-GRSRGFGFVLFKESESVD-- 56

Query:   247 RQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH 306
              + M     KL+G        DPK           VK ++V  +  +T  EKI+E F   
Sbjct:    57 -KVMDQKEHKLNGKV-----IDPKRAKAMKTK-EPVKKIFVGGLSPDTPEEKIREYFGGF 109

Query:   307 GEVTKVVMP-PGKSGKR-DFGFIHYAERSSALKAVKDTEKYEIDGQV---LEVVLAKPQT 361
             GEV  + +P   K+ KR  F FI + E     K ++  +KY   G     ++V ++K Q 
Sbjct:   110 GEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME--KKYHNVGLSKCEIKVAMSKEQY 167

Query:   362 DKKTE 366
              ++ +
Sbjct:   168 QQQQQ 172

 Score = 119 (46.9 bits), Expect = 6.1e-05, P = 6.1e-05
 Identities = 25/91 (27%), Positives = 50/91 (54%)

Query:    95 KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVS 154
             K A+ +       ++F+GGL  D  EE +R+     G+V  + L  D ++ + +GF F++
Sbjct:    74 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 133

Query:   155 FRSKEFAKKAIDE-LHSKELKGKTIRCSLSE 184
             F+ +E  KK +++  H+  L    I+ ++S+
Sbjct:   134 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 164


>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
            symbol:PFL1170w "polyadenylate-binding protein,
            putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
            [GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
            "cellular_component" evidence=ND] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
            ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
            MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
            KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
            ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
        Length = 875

 Score = 209 (78.6 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 67/269 (24%), Positives = 131/269 (48%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L +D +E  L ++   +G V  +R+ +D  + +S G+A+V++ +   A++A+D
Sbjct:    16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              L+   +KG+  R   S     L     GN+  KN  +    K + D       I   K 
Sbjct:    76 TLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKV 135

Query:   223 PQNP-SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
               +   +++ + FV Y +   A  + +K+ N   +L      +     KS  + +   ++
Sbjct:   136 ATDEFGKSKSYGFVHYEDEESAKEAIEKV-NG-VQLGSKNVYVGPFIKKS--ERATNDTK 191

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
                LYVKN PD+ +   +++LF  +GE+T +++      ++ F FI+YA+  SA  A+ +
Sbjct:   192 FTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNKNRK-FCFINYADAESAKNAMDN 250

Query:   342 TEKYEI--DGQVLEVVLAKPQTDKKTEGT 368
                 +I  DGQ+ E     P+ ++ T  T
Sbjct:   251 LNGKKITDDGQIDETY--DPKKEEATAST 277

 Score = 150 (57.9 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 44/139 (31%), Positives = 72/139 (51%)

Query:    55 SKAGASEKDQSAEANRNDDDTPHV--EEEEKPTASVGEDEKDKHAQLLALPPN---GSEV 109
             + AG+++KD++A ++  D  TP++      +  A      K K   L     N   G  +
Sbjct:   395 NNAGSAKKDETAASDCAD--TPNILYVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNL 452

Query:   110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169
             +I  L     +  LR+L EP G +   ++M+D E  +SKGF FV F S+E A KA+ E+H
Sbjct:   453 YIKNLDDGIDDIMLRELFEPFGTITSAKVMRD-EKEQSKGFGFVCFASQEEANKAVTEMH 511

Query:   170 SKELKGKTIRCSLSETKNR 188
              K + GK +   L+E + +
Sbjct:   512 LKIINGKPLYVGLAEKREQ 530


>UNIPROTKB|Q8I5H4 [details] [associations]
            symbol:PFL1170w "Polyadenylate-binding protein, putative"
            species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
            binding" evidence=ISS] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
            "poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
            ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
            MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
            KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
            ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
        Length = 875

 Score = 209 (78.6 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 67/269 (24%), Positives = 131/269 (48%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L +D +E  L ++   +G V  +R+ +D  + +S G+A+V++ +   A++A+D
Sbjct:    16 ASLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALD 75

Query:   167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              L+   +KG+  R   S     L     GN+  KN  +    K + D       I   K 
Sbjct:    76 TLNYTNIKGQPARLMWSHRDPSLRKSGTGNIFVKNLDKSIDNKALFDTFSMFGNILSCKV 135

Query:   223 PQNP-SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
               +   +++ + FV Y +   A  + +K+ N   +L      +     KS  + +   ++
Sbjct:   136 ATDEFGKSKSYGFVHYEDEESAKEAIEKV-NG-VQLGSKNVYVGPFIKKS--ERATNDTK 191

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
                LYVKN PD+ +   +++LF  +GE+T +++      ++ F FI+YA+  SA  A+ +
Sbjct:   192 FTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNKNRK-FCFINYADAESAKNAMDN 250

Query:   342 TEKYEI--DGQVLEVVLAKPQTDKKTEGT 368
                 +I  DGQ+ E     P+ ++ T  T
Sbjct:   251 LNGKKITDDGQIDETY--DPKKEEATAST 277

 Score = 150 (57.9 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 44/139 (31%), Positives = 72/139 (51%)

Query:    55 SKAGASEKDQSAEANRNDDDTPHV--EEEEKPTASVGEDEKDKHAQLLALPPN---GSEV 109
             + AG+++KD++A ++  D  TP++      +  A      K K   L     N   G  +
Sbjct:   395 NNAGSAKKDETAASDCAD--TPNILYVGPHQSRARRHAILKAKFDNLNVENKNKHQGVNL 452

Query:   110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169
             +I  L     +  LR+L EP G +   ++M+D E  +SKGF FV F S+E A KA+ E+H
Sbjct:   453 YIKNLDDGIDDIMLRELFEPFGTITSAKVMRD-EKEQSKGFGFVCFASQEEANKAVTEMH 511

Query:   170 SKELKGKTIRCSLSETKNR 188
              K + GK +   L+E + +
Sbjct:   512 LKIINGKPLYVGLAEKREQ 530


>UNIPROTKB|Q8IYX4 [details] [associations]
            symbol:DND1 "Dead end protein homolog 1" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007275
            "multicellular organismal development" evidence=IEA] [GO:0007281
            "germ cell development" evidence=IEA] [GO:0035198 "miRNA binding"
            evidence=IDA] [GO:0017091 "AU-rich element binding" evidence=IDA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
            evidence=IDA] [GO:0060965 "negative regulation of gene silencing by
            miRNA" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
            GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 GO:GO:0007281 GO:GO:0060965 eggNOG:NOG317467
            HOGENOM:HOG000112240 HOVERGEN:HBG051370 OrthoDB:EOG4TB4BN
            EMBL:AY321065 EMBL:BC033496 IPI:IPI00217910 RefSeq:NP_919225.1
            UniGene:Hs.591262 ProteinModelPortal:Q8IYX4 SMR:Q8IYX4
            STRING:Q8IYX4 PhosphoSite:Q8IYX4 DMDM:60389799 PaxDb:Q8IYX4
            PRIDE:Q8IYX4 DNASU:373863 Ensembl:ENST00000542735 GeneID:373863
            KEGG:hsa:373863 UCSC:uc003lgt.3 CTD:373863 GeneCards:GC05M140030
            HGNC:HGNC:23799 MIM:609385 neXtProt:NX_Q8IYX4 PharmGKB:PA134931157
            InParanoid:Q8IYX4 OMA:KRECELW PhylomeDB:Q8IYX4 ChiTaRS:DND1
            GenomeRNAi:373863 NextBio:100136 Bgee:Q8IYX4 CleanEx:HS_DND1
            Genevestigator:Q8IYX4 GermOnline:ENSG00000183403 Uniprot:Q8IYX4
        Length = 353

 Score = 201 (75.8 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 50/169 (29%), Positives = 86/169 (50%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             PP GSEVFIG LP+D  E  L  L + +G ++E RLM    SG ++GFA+  + S+  A+
Sbjct:    54 PPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTF-SGLNRGFAYARYSSRRGAQ 112

Query:   163 KAIDELHSKELKGKT--IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
              AI  LH+  L+     + C  +E K  L +  +P N T       ++ +GPG++   L+
Sbjct:   113 AAIATLHNHPLRPSCPLLVCRSTE-KCELSVDGLPPNLTRSALLLALQPLGPGLQEARLL 171

Query:   221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
               P  P+  +  + + + ++  A  +++ ++     L G    + W  P
Sbjct:   172 PSP-GPAPGQ-IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKP 218


>TAIR|locus:2012161 [details] [associations]
            symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
            thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
            "translation initiation factor activity" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
            evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
            biosynthetic process" evidence=RCA] InterPro:IPR000504
            InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
            Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
            SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
            GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
            EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
            RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
            UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
            SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
            ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
            GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
            OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
        Length = 671

 Score = 207 (77.9 bits), Expect = 1.1e-13, P = 1.1e-13
 Identities = 65/269 (24%), Positives = 124/269 (46%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L    ++  L +     G V  VR+ +D  +  S G+ +V++ + + A +A++
Sbjct:    45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104

Query:   167 ELHSKELKGKTIRC--SLSETKNR------LFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
             EL+   L G+ IR   S+ +   R      +FI N+ K+       +     GP + + +
Sbjct:   105 ELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGP-ILSCK 163

Query:   219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
             +  DP   S+  G+ FV Y  +  A  +  K LN     D       +   K   D S  
Sbjct:   164 VAVDPSGQSK--GYGFVQYDTDEAAQGAIDK-LNGMLLNDKQVYVGPFVH-KLQRDPSGE 219

Query:   279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGKRDFGFIHYAERSSALK 337
               +   +YVKN+ ++ S E++ ++F   G  T  V+M  G+   + FGF+++     A +
Sbjct:   220 KVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAAR 279

Query:   338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
             AV        D +   V  A+ +++++TE
Sbjct:   280 AVDALNGKTFDDKEWFVGKAQKKSERETE 308

 Score = 138 (53.6 bits), Expect = 5.3e-06, P = 5.3e-06
 Identities = 65/262 (24%), Positives = 115/262 (43%)

Query:   189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
             +++ N+ ++ +++E  KV  + G     + +++D +  S+  GF FV + N+  A  +  
Sbjct:   226 VYVKNLSESLSDEELNKVFGEFGVTTSCV-IMRDGEGKSK--GFGFVNFENSDDAARAVD 282

Query:   249 KMLNANFKLDGNTPTISWADPKSTPD------------HSAAASQVKALYVKNIPDNTST 296
              +    F  D     +  A  KS  +             +A  SQ   LYVKN+ ++ + 
Sbjct:   283 ALNGKTF--DDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTD 340

Query:   297 EKIKELFQRHGEVT--KVVMPPGKSG-KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLE 353
             +K++E F   G +T  KV+  P  SG  R  GF+ ++    A +A+ +     I  + L 
Sbjct:   341 DKLREHFAPFGTITSCKVMRDP--SGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLY 398

Query:   354 VVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYG 413
             V LA+ + D+K      +S  + P ++P A        P G  G   G      Q + YG
Sbjct:   399 VALAQRKEDRKARLQAQFSQ-MRPVNMPPAVGPRMQMYPPG--GPPMG------QQLFYG 449

Query:   414 RGPMPSGMHMVPMVLPDGQIGY 435
             +GP        P ++P    GY
Sbjct:   450 QGP--------PAMIPQPGFGY 463

 Score = 120 (47.3 bits), Expect = 0.00050, P = 0.00050
 Identities = 37/119 (31%), Positives = 62/119 (52%)

Query:    72 DDDTPHVEEEEKPTASVGEDE-KDKHAQLL---ALPPNGSEVFIGGLPKDASEEDLRDLC 127
             DD    V + +K   S  E E K K  Q L   A    GS +++  L +  +++ LR+  
Sbjct:   290 DDKEWFVGKAQKK--SERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKLREHF 347

Query:   128 EPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
              P G +   ++M+D  SG S+G  FV+F + E A +AI E++ K +  K +  +L++ K
Sbjct:   348 APFGTITSCKVMRDP-SGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRK 405


>UNIPROTKB|Q14103 [details] [associations]
            symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0043488 "regulation of mRNA stability"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
            [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
            regulation of transcription, DNA-dependent" evidence=NAS]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
            "RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
            evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
            "cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
            [GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
            metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
            process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
            Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
            GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
            Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
            GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
            GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
            KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
            EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
            EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
            IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
            PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
            RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
            PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
            PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
            ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
            MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
            SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
            Ensembl:ENST00000313899 Ensembl:ENST00000352301
            Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
            UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
            GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
            neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
            PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
            GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
            Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
            InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
        Length = 355

 Score = 192 (72.6 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
 Identities = 58/187 (31%), Positives = 92/187 (49%)

Query:    57 AGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPK 116
             +G +E   SAE+     D    EE+E  + S       +H++         ++FIGGL  
Sbjct:    53 SGGTEGG-SAESEGAKIDASKNEEDEGHSNS-----SPRHSEAATAQREEWKMFIGGLSW 106

Query:   117 DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK 176
             D +++DL+D     G+V +  L  D  +G S+GF FV F+  E   K +D+   K L GK
Sbjct:   107 DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHK-LNGK 165

Query:   177 TI---RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNR 230
              I   R    +TK    ++F+G +  +  E++ R+     G  VE+IEL  D +   R R
Sbjct:   166 VIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPMDNKTNKR-R 223

Query:   231 GFSFVLY 237
             GF F+ +
Sbjct:   224 GFCFITF 230

 Score = 160 (61.4 bits), Expect = 8.8e-10, Sum P(2) = 8.8e-10
 Identities = 74/280 (26%), Positives = 123/280 (43%)

Query:   144 SGESKGFAFVSFRSK-EFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDE 202
             SG ++G +  S  +K + +K   DE HS      +   +    + ++FIG +  + T+ +
Sbjct:    53 SGGTEGGSAESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKD 112

Query:   203 FRKVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261
              +      G  V+ T++L  DP    R+RGF FVL+  +   D   + M     KL+G  
Sbjct:   113 LKDYFSKFGEVVDCTLKL--DPIT-GRSRGFGFVLFKESESVD---KVMDQKEHKLNGKV 166

Query:   262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP-PGKSG 320
                   DPK           VK ++V  +  +T  EKI+E F   GEV  + +P   K+ 
Sbjct:   167 -----IDPKRAKAMKTK-EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTN 220

Query:   321 KR-DFGFIHYAERSSALKAVKDTEKYEIDGQV---LEVVLAKPQTDKKTE----GTFP-- 370
             KR  F FI + E     K ++  +KY   G     ++V ++K Q  ++ +    G F   
Sbjct:   221 KRRGFCFITFKEEEPVKKIME--KKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGR 278

Query:   371 -YSPGLVPTHLPHAGYGGFAGTPYGSVG---TGFGVAAGF 406
                 G  P+   + GY  +    YG+ G    G+G   G+
Sbjct:   279 ARGRGGGPSQNWNQGYSNYWNQGYGNYGYNSQGYGGYGGY 318

 Score = 119 (46.9 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
 Identities = 25/91 (27%), Positives = 50/91 (54%)

Query:    95 KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVS 154
             K A+ +       ++F+GGL  D  EE +R+     G+V  + L  D ++ + +GF F++
Sbjct:   170 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229

Query:   155 FRSKEFAKKAIDE-LHSKELKGKTIRCSLSE 184
             F+ +E  KK +++  H+  L    I+ ++S+
Sbjct:   230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260

 Score = 47 (21.6 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
 Identities = 10/31 (32%), Positives = 13/31 (41%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAGFQQPMIYGR 414
             GYGG+ G  Y      +G      Q   YG+
Sbjct:   311 GYGGYGGYDYTGYNNYYGYGDYSNQQSGYGK 341


>UNIPROTKB|D6RBZ0 [details] [associations]
            symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
            A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
            InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
            ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
            SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
            Uniprot:D6RBZ0
        Length = 327

 Score = 184 (69.8 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
 Identities = 49/172 (28%), Positives = 89/172 (51%)

Query:   105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
             +  ++F+GGL  D S++DL+D     G+V +  +  D  +G S+GF F+ F+     +K 
Sbjct:    68 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKV 127

Query:   165 IDELHSKELKGKTI--RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
             +D+   + L G+ I  + +++  K+   ++F+G +    TE++ R+   + G  +E IEL
Sbjct:   128 LDQKEHR-LDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGE-IEAIEL 185

Query:   220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK 270
               DP+   R RGF F+ +          +K+L   F  + G+   I  A PK
Sbjct:   186 PMDPKLNKR-RGFVFITFKEEEPV----KKVLEKKFHTVSGSKCEIKVAQPK 232

 Score = 161 (61.7 bits), Expect = 3.7e-09, P = 3.7e-09
 Identities = 71/269 (26%), Positives = 119/269 (44%)

Query:   174 KGKTIRCSLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRG 231
             +G  I  S +E    ++F+G +  + ++ + +      G  V+ TI++  DP N  R+RG
Sbjct:    56 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM--DP-NTGRSRG 112

Query:   232 FSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNI 290
             F F+L+ + A    S +K+L+    +LDG        DPK     +     VK ++V  +
Sbjct:   113 FGFILFKDAA----SVEKVLDQKEHRLDGRV-----IDPKKAM--AMKKDPVKKIFVGGL 161

Query:   291 PDNTSTEKIKELFQRHGEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348
                 + EKI+E F   GE+  + +P  P  + +R F FI + E    +K V + + + + 
Sbjct:   162 NPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEP-VKKVLEKKFHTVS 220

Query:   349 GQVLEVVLAKPQTDKKTEGTFPY-SPGLVPTHLPHAGYGGFAGTPYGS-VGTGFGVAAGF 406
             G   E+ +A+P   K+      Y S G    +  + G GG     +    G  +    G+
Sbjct:   221 GSKCEIKVAQP---KEVYQQQQYGSGGRGNRNRGNRGSGGGQSQSWNQGYGNYWNQGYGY 277

Query:   407 QQPMIYGRGPMPSGMHMVPMVLPDGQIGY 435
             QQ    G GP   G    P     G  GY
Sbjct:   278 QQ----GYGPGYGGYDYSPY----GYYGY 298

 Score = 54 (24.1 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSG 420
             GYGG+  +PYG  G G G     Q    YG+     G
Sbjct:   284 GYGGYDYSPYGYYGYGPGYDYS-QGSTNYGKSQRRGG 319


>TAIR|locus:2136298 [details] [associations]
            symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
            species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
            cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
            [GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
            "plasma membrane" evidence=IDA] [GO:0009651 "response to salt
            stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
            [GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
            "response to abscisic acid stimulus" evidence=IDA] [GO:0005829
            "cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
            [GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
            evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
            [GO:0000380 "alternative mRNA splicing, via spliceosome"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
            GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
            EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
            GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
            GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
            EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
            HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
            EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
            IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
            ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
            STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
            EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
            TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
            Uniprot:Q03251
        Length = 169

 Score = 160 (61.4 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
 Identities = 30/79 (37%), Positives = 54/79 (68%)

Query:   110 FIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169
             F+GGL    ++EDL+      GDV + +++ D+ESG S+GF FV+F+ ++  + AI+E++
Sbjct:     9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68

Query:   170 SKELKGKTIRCSLSETKNR 188
              KEL G+ I  +++E ++R
Sbjct:    69 GKELDGRVI--TVNEAQSR 85

 Score = 44 (20.5 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query:   384 GYGGFAGTPYGSVGTGF 400
             GYGG  G  YG  G G+
Sbjct:   153 GYGGGDGGSYGGGGGGW 169

 Score = 37 (18.1 bits), Expect = 6.4e-13, Sum P(2) = 6.4e-13
 Identities = 8/16 (50%), Positives = 9/16 (56%)

Query:   386 GGFAGTPYGSVGTGFG 401
             GG+ G   GS G G G
Sbjct:   152 GGYGGGDGGSYGGGGG 167


>UNIPROTKB|D4A6A2 [details] [associations]
            symbol:D4A6A2 "Uncharacterized protein" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
            ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
        Length = 232

 Score = 183 (69.5 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 61/226 (26%), Positives = 105/226 (46%)

Query:   184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
             E   +LFIG +    T+D  R+  +  G   + + +++DPQ   R+RGF FV Y   +C 
Sbjct:    10 EQLRKLFIGGLSFETTDDSLREHFQKWGTLTDCV-VMRDPQT-KRSRGFGFVTY---SCE 64

Query:   244 DYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303
             +     M     K+DG       A  +       A   VK ++V  I ++T    +++ F
Sbjct:    65 EVDAA-MCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTGEYNLRDYF 123

Query:   304 QRHGEVTKV-VMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYE-IDGQVLEVVLAKPQ 360
             +++G++  + VM   +SGK R F F+ + +  +  K V   +KY  I+G   EV  A  +
Sbjct:   124 EKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQKYHTINGHNCEVKKALSK 181

Query:   361 TDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVG-TGFGVAAG 405
              + ++ G+     G     + H G  G  G  +G  G +G+G   G
Sbjct:   182 QEMQSAGSQRGCGGGSGNFMGHGGNFGGGGGNFGRGGNSGYGNQGG 227

 Score = 139 (54.0 bits), Expect = 3.7e-07, P = 3.7e-07
 Identities = 38/152 (25%), Positives = 78/152 (51%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P    ++FIGGL  + +++ LR+  +  G + +  +M+D ++  S+GF FV++  +E   
Sbjct:     9 PEQLRKLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEVDA 68

Query:   163 KAIDELHSKE---LKGK-------TIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGP 212
                   H  +   ++ K       +++     T  ++F+G + ++  E   R   E  G 
Sbjct:    69 AMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTGEYNLRDYFEKYGK 128

Query:   213 GVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244
              +ETIE+++D Q+  + RGF+FV + ++   D
Sbjct:   129 -IETIEVMEDRQS-GKKRGFAFVTFDDHDTVD 158

 Score = 127 (49.8 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 26/89 (29%), Positives = 50/89 (56%)

Query:    83 KPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDK 142
             +P  +V  ++  K    L +     ++F+GG+ +D  E +LRD  E  G +  + +M+D+
Sbjct:    83 EPKRAVSREDSVKPGAHLTV----KKIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDR 138

Query:   143 ESGESKGFAFVSFRSKEFAKK-AIDELHS 170
             +SG+ +GFAFV+F   +   K  + + H+
Sbjct:   139 QSGKKRGFAFVTFDDHDTVDKIVVQKYHT 167


>UNIPROTKB|D6R9M7 [details] [associations]
            symbol:RBM47 "RNA-binding protein 47" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC098869
            EMBL:AC112717 HGNC:HGNC:30358 ChiTaRS:RBM47 IPI:IPI00967035
            ProteinModelPortal:D6R9M7 SMR:D6R9M7 Ensembl:ENST00000505414
            HOGENOM:HOG000206189 ArrayExpress:D6R9M7 Bgee:D6R9M7 Uniprot:D6R9M7
        Length = 159

 Score = 183 (69.5 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 37/94 (39%), Positives = 62/94 (65%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P  G EVF+G +P+D  E++L  + E +G ++E+RLM D + G+++G+AFV +  K  AK
Sbjct:    67 PQRGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAK 125

Query:   163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVP 195
             +A+ EL++ E++ G+ +    S    RLFIG +P
Sbjct:   126 RAVRELNNYEIRPGRLLGVCCSVDNCRLFIGGIP 159


>RGD|1310759 [details] [associations]
            symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
            RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
            GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
            OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
        Length = 630

 Score = 206 (77.6 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 65/266 (24%), Positives = 119/266 (44%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  D +E  L +     G +  +R+ +D  +  S G+A V+F     A++A+D
Sbjct:    11 ASLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALD 70

Query:   167 ELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++   +KGK +R   S+   +  R  +GNV  KN  +    K + D       I   K 
Sbjct:    71 TMNFDVIKGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKV 130

Query:   223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
               + + ++G  FV +     A+ + +KM N     D       +   K    +      +
Sbjct:   131 VCDENGSKGHGFVHFETEEAAERAIEKM-NGMLLNDRKVFVGQFKSRKEREAELGTRTKE 189

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
                +Y+KN  D    + +  LF R G+V  V +   + GK + FGF+ +     A KAV 
Sbjct:   190 FTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVD 249

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
             +    E++G+ + V  A+ + D+  E
Sbjct:   250 EMNGKELNGKHIYVGPAQKKVDRHIE 275

 Score = 146 (56.5 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
 Identities = 35/97 (36%), Positives = 52/97 (53%)

Query:    90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
             +  K++ A+L       + V+I        ++ L  L    G V  V++M D E G+SKG
Sbjct:   174 KSRKEREAELGTRTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTD-EGGKSKG 232

Query:   150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
             F FVSF   E A+KA+DE++ KEL GK I    ++ K
Sbjct:   233 FGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKK 269

 Score = 103 (41.3 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
 Identities = 33/123 (26%), Positives = 59/123 (47%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
             LYVKN+ D    E++++ F   G +T  KV+   G+S  + FGF+ ++    A KAV + 
Sbjct:   296 LYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGGRS--KGFGFVCFSSPEEATKAVSEM 353

Query:   343 EKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL-PHAGYGGFAGTPYGSVGTGFG 401
                 +  + L V LA+ + +++   T  Y   +      P++    +   P     +G+ 
Sbjct:   354 NGRIVATKPLYVALAQRKEERQAHLTNQYIQRMASVRSGPNSLINAYQPAP-----SGYS 408

Query:   402 VAA 404
             VAA
Sbjct:   409 VAA 411

 Score = 40 (19.1 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query:   189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
             L++ N+     ++  +K     G    TI   K      R++GF FV +
Sbjct:   296 LYVKNLDDGIDDERLQKEFSPFG----TITSTKVMTEGGRSKGFGFVCF 340


>ASPGD|ASPL0000073559 [details] [associations]
            symbol:AN10574 species:162425 "Emericella nidulans"
            [GO:0006396 "RNA processing" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR003107 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00386
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622
            GO:GO:0006396 EMBL:BN001303 ProteinModelPortal:C8VB25
            EnsemblFungi:CADANIAT00005779 OMA:ERATRHC Uniprot:C8VB25
        Length = 1290

 Score = 210 (79.0 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 83/327 (25%), Positives = 142/327 (43%)

Query:    61 EKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPN--GSEVFIGGLPKDA 118
             E  QS +  R D+ T +      PT     D     A+ +AL  +   S V +  LP+  
Sbjct:   785 EASQSEKRKREDESTAN----GLPTKRARADRASVEAEPVALRRDRENSTVVVKNLPQGT 840

Query:   119 SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178
             +E  +R      G +  V++M   E G+S+  A + F +++ A  A      K   G TI
Sbjct:   841 TEHKVRQFFRDCGAINGVKMMPG-EDGKSE-VAMIEFNTRDDAAAA-QTRDQKTFDGNTI 897

Query:   179 RCSL-SETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
             +    SET   LF+ N P    E+  R +    G   E I++       + +R F + L 
Sbjct:   898 QVHFGSETT--LFVTNFPPTADENYIRDLFSKYG---EIIDIRFPSLKYNTHRRFCY-LQ 951

Query:   238 YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTE 297
             +  + A +S    L+ +   +G    +  +DP    D +    + + ++V N+  + S +
Sbjct:   952 FKTSVAAHSALA-LDGSAVGNGLHLVVKISDPSRKQDRNGPIYEGREIHVSNVNWSASED 1010

Query:   298 KIKELFQRHGEVTKVVMPPG-KSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356
              +KELF R G V  V +P     G + FG++ ++ +  A  A+   E+ E  G+ L V +
Sbjct:  1011 DLKELFSRFGTVELVRLPRKVDGGSKGFGYVVFSSKEEATAALAMHEQ-EFRGRPLHVKV 1069

Query:   357 AKPQTDKKTEGTFPYSPGLVPTHLPHA 383
             + PQ  K+   T     G   +  P A
Sbjct:  1070 SAPQGAKRIAATVVTRVGKSQSPAPEA 1096


>UNIPROTKB|A5D9H5 [details] [associations]
            symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
            species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
            eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
            GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
            Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
            RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
            Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
            NextBio:20874604 Uniprot:A5D9H5
        Length = 306

 Score = 197 (74.4 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 59/187 (31%), Positives = 92/187 (49%)

Query:    57 AGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPK 116
             AG +E   SAE+     D    EE+E  + S       +H++         ++FIGGL  
Sbjct:    53 AGGTE-GSSAESEGAKIDASKNEEDEGHSNS-----SPRHSEAATAQREEWKMFIGGLSW 106

Query:   117 DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK 176
             D +++DL+D     G+V +  L  D  +G S+GF FV F+  E   K +D+   K L GK
Sbjct:   107 DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHK-LNGK 165

Query:   177 TI---RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNR 230
              I   R    +TK    ++F+G +  +  E++ R+     G  VE+IEL  D +   R R
Sbjct:   166 VIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPMDNKTNKR-R 223

Query:   231 GFSFVLY 237
             GF F+ +
Sbjct:   224 GFCFITF 230

 Score = 147 (56.8 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 61/230 (26%), Positives = 105/230 (45%)

Query:   144 SGESKGFAFVSFRSK-EFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDE 202
             +G ++G +  S  +K + +K   DE HS      +   +    + ++FIG +  + T+ +
Sbjct:    53 AGGTEGSSAESEGAKIDASKNEEDEGHSNSSPRHSEAATAQREEWKMFIGGLSWDTTKKD 112

Query:   203 FRKVIEDVGPGVE-TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261
              +      G  V+ T++L  DP    R+RGF FVL+  +   D   + M     KL+G  
Sbjct:   113 LKDYFSKFGEVVDCTLKL--DPIT-GRSRGFGFVLFKESESVD---KVMDQKEHKLNGKV 166

Query:   262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP-PGKSG 320
                   DPK           VK ++V  +  +T  EKI+E F   GEV  + +P   K+ 
Sbjct:   167 -----IDPKRAKAMKTK-EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTN 220

Query:   321 KR-DFGFIHYAERSSALKAVKDTEKYEIDGQV---LEVVLAKPQTDKKTE 366
             KR  F FI + E     K ++  +KY   G     ++V ++K Q  ++ +
Sbjct:   221 KRRGFCFITFKEEEPVKKIME--KKYHNVGLSKCEIKVAMSKEQYQQQQQ 268

 Score = 119 (46.9 bits), Expect = 0.00018, P = 0.00018
 Identities = 25/91 (27%), Positives = 50/91 (54%)

Query:    95 KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVS 154
             K A+ +       ++F+GGL  D  EE +R+     G+V  + L  D ++ + +GF F++
Sbjct:   170 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 229

Query:   155 FRSKEFAKKAIDE-LHSKELKGKTIRCSLSE 184
             F+ +E  KK +++  H+  L    I+ ++S+
Sbjct:   230 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 260


>UNIPROTKB|G3V6A5 [details] [associations]
            symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
            isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
            GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
            Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
            KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
            Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
        Length = 334

 Score = 188 (71.2 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
 Identities = 48/136 (35%), Positives = 73/136 (53%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++FIGGL  D +++DL+D     GDV +  L  D  +G S+GF FV F+  E   K +D+
Sbjct:    77 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 136

Query:   168 LHSKELKGKTI---RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
                K L GK I   R    +TK    ++F+G +  +  E++ R+     G  VE+IEL  
Sbjct:   137 KEHK-LNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPM 194

Query:   222 DPQNPSRNRGFSFVLY 237
             D +   R RGF F+ +
Sbjct:   195 DNKTNKR-RGFCFITF 209

 Score = 162 (62.1 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
 Identities = 71/254 (27%), Positives = 113/254 (44%)

Query:   170 SKELKGKTIRCSLSET-KNRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPS 227
             S E +G  I  S +E  + ++FIG +  + T+ + +      G  V+ T++L  DP    
Sbjct:    58 STEAEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKL--DPIT-G 114

Query:   228 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYV 287
             R+RGF FVL+  +   D   + M     KL+G        DPK           VK ++V
Sbjct:   115 RSRGFGFVLFKESESVD---KVMDQKEHKLNGKV-----IDPKRAKAMKTK-EPVKKIFV 165

Query:   288 KNIPDNTSTEKIKELFQRHGEVTKVVMP-PGKSGKR-DFGFIHYAERSSALKAVKDTEKY 345
               +  +T  EKI+E F   GEV  + +P   K+ KR  F FI + E     K ++  +KY
Sbjct:   166 GGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME--KKY 223

Query:   346 EIDGQV---LEVVLAKPQTDKKTE----GTFP---YSPGLVPTHLPHAGYGGFAGTPYGS 395
                G     ++V ++K Q  ++ +    G F       G  P+   + GY  +    YGS
Sbjct:   224 HNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGS 283

Query:   396 VG---TGFGVAAGF 406
              G    G+G   G+
Sbjct:   284 YGYNSQGYGGYGGY 297

 Score = 119 (46.9 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
 Identities = 25/91 (27%), Positives = 50/91 (54%)

Query:    95 KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVS 154
             K A+ +       ++F+GGL  D  EE +R+     G+V  + L  D ++ + +GF F++
Sbjct:   149 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 208

Query:   155 FRSKEFAKKAIDE-LHSKELKGKTIRCSLSE 184
             F+ +E  KK +++  H+  L    I+ ++S+
Sbjct:   209 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 239

 Score = 48 (22.0 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAGFQQPMIYGR 414
             GYGG+ G  Y    + +G      Q   YG+
Sbjct:   290 GYGGYGGYDYTGYNSYYGYGDYSNQQSGYGK 320

 Score = 42 (19.8 bits), Expect = 7.8e-13, Sum P(2) = 7.8e-13
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query:   382 HAGYGGFAGTPYGSVGTGFG 401
             + GYGG+  T Y S   G+G
Sbjct:   291 YGGYGGYDYTGYNSY-YGYG 309


>TAIR|locus:2037633 [details] [associations]
            symbol:RBP1 "RNA-binding protein 1" species:3702
            "Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISM] [GO:0003727 "single-stranded RNA binding"
            evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
            GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
            EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
            IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
            ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
            PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
            KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
            PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
            Uniprot:Q9C652
        Length = 360

 Score = 135 (52.6 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
 Identities = 41/140 (29%), Positives = 68/140 (48%)

Query:   276 SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVV-MPPGKSGK-RDFGFIHYAERS 333
             +   S+ K ++V  +  NT+ E+ K  F+R G  T VV M  G + + R FGF+ Y    
Sbjct:   113 NGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSED 172

Query:   334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPY 393
             S ++ V  +  +E+  + +EV  A P+     EG    +   V  ++P + Y  F  TPY
Sbjct:   173 S-VEVVMQSNFHELSDKRVEVKRAIPK-----EGIQSNNGNAV--NIPPS-YSSFQATPY 223

Query:   394 GSVGTGFGVAAGFQQPMIYG 413
                  G+G+   F  P ++G
Sbjct:   224 VPEQNGYGMVLQFPPP-VFG 242

 Score = 111 (44.1 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
 Identities = 26/83 (31%), Positives = 45/83 (54%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++F+GG+ K+ SEE L+      G V E  + K+K +G+ +GF FV F +     KA+ +
Sbjct:     7 KLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRD 66

Query:   168 LHSKELKGKTIRCSLSETKNRLF 190
              H   + GK +    +  K+ L+
Sbjct:    67 THF--ILGKPVDVRKAIRKHELY 87

 Score = 62 (26.9 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNN 240
             +LF+G + K  +E+  ++     G  +E + + K+     + RGF FV + N+
Sbjct:     7 KLFVGGIAKETSEEALKQYFSRYGAVLEAV-VAKEKVT-GKPRGFGFVRFAND 57


>TAIR|locus:2168848 [details] [associations]
            symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
            evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
            HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
            IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
            ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
            EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
            TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
            ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
            Uniprot:Q9FM47
        Length = 423

 Score = 192 (72.6 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
 Identities = 51/199 (25%), Positives = 101/199 (50%)

Query:    81 EEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMK 140
             + KP+  + +D+            +  ++F+GGL ++ +  +        G++ +  +MK
Sbjct:    16 DPKPSEDIEDDDDKSQPHSGGGVDSAGKIFVGGLARETTSAEFLKHFGKYGEITDSVIMK 75

Query:   141 DKESGESKGFAFVSFRSKEFAKKAIDELH---SKELKGK-TI-RCSLS----ETKNRLFI 191
             D+++G+ +GF FV++       K I + H    K+++ K TI R S+S    +TK ++F+
Sbjct:    76 DRKTGQPRGFGFVTYADSSVVDKVIQDNHIIIGKQVEIKRTIPRGSMSSNDFKTK-KIFV 134

Query:   192 GNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKML 251
             G +P +  +DEF++     G  ++  ++++D  +  R+RGF FV Y +    D+   K  
Sbjct:   135 GGIPSSVDDDEFKEFFMQFGE-LKEHQIMRD-HSTGRSRGFGFVTYESEDMVDHLLAK-- 190

Query:   252 NANFKLDGNTPTISWADPK 270
                 +L G    I  A+PK
Sbjct:   191 GNRIELSGTQVEIKKAEPK 209

 Score = 169 (64.5 bits), Expect = 8.7e-10, P = 8.7e-10
 Identities = 59/236 (25%), Positives = 108/236 (45%)

Query:   184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
             ++  ++F+G + +  T  EF K     G   +++ ++KD +   + RGF FV Y +++  
Sbjct:    39 DSAGKIFVGGLARETTSAEFLKHFGKYGEITDSV-IMKD-RKTGQPRGFGFVTYADSSVV 96

Query:   244 DYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303
             D    K++  N  + G    I    P+ +   S+   + K ++V  IP +   ++ KE F
Sbjct:    97 D----KVIQDNHIIIGKQVEIKRTIPRGSM--SSNDFKTKKIFVGGIPSSVDDDEFKEFF 150

Query:   304 QRHGEVTK-VVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361
              + GE+ +  +M    +G+ R FGF+ Y         +    + E+ G  +E+  A+P+ 
Sbjct:   151 MQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEIKKAEPK- 209

Query:   362 DKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSV-GTGFGVAAG-FQQPMIYGRG 415
              K    T P S     +    + +GG  G  YG   G G+G   G ++    YG G
Sbjct:   210 -KPNSVTTP-SKRFGDSR---SNFGGGYGDGYGGGHGGGYGGPGGPYKSGGGYGGG 260

 Score = 49 (22.3 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAG 405
             GYGG+ G   G  G G+G   G
Sbjct:   264 GYGGYGGEFGGYGGGGYGGGVG 285

 Score = 48 (22.0 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query:   381 PHAGYGGFAGTPYGSVGTGFG 401
             P  GYGG    P GS G G+G
Sbjct:   334 PGGGYGG----PSGSYGGGYG 350

 Score = 46 (21.3 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query:   383 AGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRG 415
             +G GG+ G   G+ G G+    G+    + G G
Sbjct:   352 SGIGGYGGGMGGAGGGGYRGGGGYDMGGVGGGG 384

 Score = 46 (21.3 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
 Identities = 16/42 (38%), Positives = 19/42 (45%)

Query:   384 GYGG----FAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGM 421
             GYGG      G  YG  G G+G  +G      YG G   SG+
Sbjct:   318 GYGGGPGDMYGGSYGEPGGGYGGPSGS-----YGGGYGSSGI 354

 Score = 45 (20.9 bits), Expect = 5.5e-13, Sum P(2) = 5.5e-13
 Identities = 10/26 (38%), Positives = 12/26 (46%)

Query:   381 PHAGYGG-FAGTPYGSVGTGFGVAAG 405
             P   YGG +  +  G  G G G A G
Sbjct:   341 PSGSYGGGYGSSGIGGYGGGMGGAGG 366

 Score = 44 (20.5 bits), Expect = 7.0e-13, Sum P(2) = 7.0e-13
 Identities = 10/22 (45%), Positives = 10/22 (45%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAG 405
             GYGG     YG  G  FG   G
Sbjct:   256 GYGGGRSGGYGGYGGEFGGYGG 277


>UNIPROTKB|Q4R535 [details] [associations]
            symbol:CELF4 "CUGBP Elav-like family member 4" species:9541
            "Macaca fascicularis" [GO:0048026 "positive regulation of mRNA
            splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
            HOVERGEN:HBG107646 GO:GO:0048026 EMBL:AB169709
            ProteinModelPortal:Q4R535 SMR:Q4R535 Uniprot:Q4R535
        Length = 474

 Score = 192 (72.6 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
 Identities = 46/141 (32%), Positives = 85/141 (60%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++FIG +P++  E+DL+ L E  G ++E+ ++KD+ +G  KG AF+++  +E A KA   
Sbjct:    55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114

Query:   168 LHS-KELKG--KTIRCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
             LH  K L G  + I+   +++++R    LF+G + K  +ED+ R++ E  G  +E   ++
Sbjct:   115 LHEQKTLPGMNRPIQVKPADSESRGDRKLFVGMLNKQQSEDDVRRLFEAFG-NIEECTIL 173

Query:   221 KDPQNPSRNRGFSFVLYYNNA 241
             + P   S+  G +FV Y ++A
Sbjct:   174 RGPDGNSK--GCAFVKYSSHA 192

 Score = 128 (50.1 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 50/211 (23%), Positives = 91/211 (43%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
             +LFIG +P+N  E + + + E+ G   E + ++KD +    ++G +F+ Y     A    
Sbjct:    55 KLFIGQIPRNLDEKDLKPLFEEFGKIYE-LTVLKD-RFTGMHKGCAFLTYCERESA-LKA 111

Query:   248 QKMLNANFKLDG-NTPT-ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
             Q  L+    L G N P  +  AD +S  D        + L+V  +    S + ++ LF+ 
Sbjct:   112 QSALHEQKTLPGMNRPIQVKPADSESRGD--------RKLFVGMLNKQQSEDDVRRLFEA 163

Query:   306 HGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYE-IDGQVLEVVLAKPQTDK 363
              G + +  +  G  G  +   F+ Y+  + A  A+      + + G    +V+    TDK
Sbjct:   164 FGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDK 223

Query:   364 -KTEGTFPYSPGLV----PTHLPHAGYGGFA 389
              +T        G +    P  +P   YG +A
Sbjct:   224 ERTMRRMQQMAGQMGMFNPMAIPFGAYGAYA 254

 Score = 114 (45.2 bits), Expect = 0.00016, Sum P(2) = 0.00016
 Identities = 25/65 (38%), Positives = 40/65 (61%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++F+G L K  SE+D+R L E  G++ E  +++  + G SKG AFV + S   A+ AI+ 
Sbjct:   142 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPD-GNSKGCAFVKYSSHAEAQAAINA 200

Query:   168 LHSKE 172
             LH  +
Sbjct:   201 LHGSQ 205

 Score = 51 (23.0 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
 Identities = 11/37 (29%), Positives = 22/37 (59%)

Query:   324 FGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360
             FGF+ +   +SA  A++    ++I  + L+V L +P+
Sbjct:   432 FGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK 468


>UNIPROTKB|A6H776 [details] [associations]
            symbol:BRUNOL4 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0090394 "negative regulation of excitatory postsynaptic
            membrane potential" evidence=IEA] [GO:0048026 "positive regulation
            of mRNA splicing, via spliceosome" evidence=IEA] [GO:0006376 "mRNA
            splice site selection" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
            "regulation of alternative mRNA splicing, via spliceosome"
            evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
            GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000380 HOVERGEN:HBG107646
            KO:K13207 GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
            GO:GO:0006376 GeneTree:ENSGT00560000076837 GO:GO:0000381 CTD:56853
            OMA:EDSEKNG EMBL:DAAA02056370 EMBL:DAAA02056371 EMBL:DAAA02056372
            EMBL:DAAA02056373 EMBL:DAAA02056374 EMBL:DAAA02056375
            EMBL:DAAA02056376 EMBL:DAAA02056377 EMBL:DAAA02056378 EMBL:BC146142
            IPI:IPI00907335 RefSeq:NP_001092538.1 UniGene:Bt.62140 SMR:A6H776
            Ensembl:ENSBTAT00000006498 GeneID:535177 KEGG:bta:535177
            InParanoid:A6H776 NextBio:20876649 Uniprot:A6H776
        Length = 475

 Score = 192 (72.6 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
 Identities = 46/141 (32%), Positives = 85/141 (60%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++FIG +P++  E+DL+ L E  G ++E+ ++KD+ +G  KG AF+++  +E A KA   
Sbjct:    55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSA 114

Query:   168 LHS-KELKG--KTIRCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
             LH  K L G  + I+   +++++R    LF+G + K  +ED+ R++ E  G  +E   ++
Sbjct:   115 LHEQKTLPGMNRPIQVKPADSESRGDRKLFVGMLNKQQSEDDVRRLFEAFG-NIEECTIL 173

Query:   221 KDPQNPSRNRGFSFVLYYNNA 241
             + P   S+  G +FV Y ++A
Sbjct:   174 RGPDGNSK--GCAFVKYSSHA 192

 Score = 128 (50.1 bits), Expect = 4.0e-05, P = 4.0e-05
 Identities = 50/211 (23%), Positives = 91/211 (43%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
             +LFIG +P+N  E + + + E+ G   E + ++KD +    ++G +F+ Y     A    
Sbjct:    55 KLFIGQIPRNLDEKDLKPLFEEFGKIYE-LTVLKD-RFTGMHKGCAFLTYCERESA-LKA 111

Query:   248 QKMLNANFKLDG-NTPT-ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305
             Q  L+    L G N P  +  AD +S  D        + L+V  +    S + ++ LF+ 
Sbjct:   112 QSALHEQKTLPGMNRPIQVKPADSESRGD--------RKLFVGMLNKQQSEDDVRRLFEA 163

Query:   306 HGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYE-IDGQVLEVVLAKPQTDK 363
              G + +  +  G  G  +   F+ Y+  + A  A+      + + G    +V+    TDK
Sbjct:   164 FGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDK 223

Query:   364 -KTEGTFPYSPGLV----PTHLPHAGYGGFA 389
              +T        G +    P  +P   YG +A
Sbjct:   224 ERTMRRMQQMAGQMGMFNPMAIPFGAYGAYA 254

 Score = 114 (45.2 bits), Expect = 0.00016, Sum P(2) = 0.00016
 Identities = 25/65 (38%), Positives = 40/65 (61%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++F+G L K  SE+D+R L E  G++ E  +++  + G SKG AFV + S   A+ AI+ 
Sbjct:   142 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPD-GNSKGCAFVKYSSHAEAQAAINA 200

Query:   168 LHSKE 172
             LH  +
Sbjct:   201 LHGSQ 205

 Score = 51 (23.0 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
 Identities = 11/37 (29%), Positives = 22/37 (59%)

Query:   324 FGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360
             FGF+ +   +SA  A++    ++I  + L+V L +P+
Sbjct:   433 FGFVSFDNPASAQTAIQAMNGFQIGMKRLKVQLKRPK 469


>UNIPROTKB|G3V6A4 [details] [associations]
            symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
            "ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
            InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
            UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
            NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
            Uniprot:G3V6A4
        Length = 304

 Score = 195 (73.7 bits), Expect = 2.4e-13, P = 2.4e-13
 Identities = 60/189 (31%), Positives = 90/189 (47%)

Query:    55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGL 114
             S  G +E   S EA     D    EE+E  + S       +H +         ++FIGGL
Sbjct:    49 SAPGGTEGG-STEAEGAKIDASKNEEDEGHSNS-----SPRHTEAATAQREEWKMFIGGL 102

Query:   115 PKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 174
               D +++DL+D     GDV +  L  D  +G S+GF FV F+  E   K +D+   K L 
Sbjct:   103 SWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHK-LN 161

Query:   175 GKTI---RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSR 228
             GK I   R    +TK    ++F+G +  +  E++ R+     G  VE+IEL  D +   R
Sbjct:   162 GKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPMDNKTNKR 220

Query:   229 NRGFSFVLY 237
              RGF F+ +
Sbjct:   221 -RGFCFITF 228

 Score = 147 (56.8 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 58/212 (27%), Positives = 95/212 (44%)

Query:   161 AKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIEL 219
             +K   DE HS      T   +    + ++FIG +  + T+ + +      G  V+ T++L
Sbjct:    69 SKNEEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKL 128

Query:   220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
               DP    R+RGF FVL+  +   D   + M     KL+G        DPK         
Sbjct:   129 --DPIT-GRSRGFGFVLFKESESVD---KVMDQKEHKLNGKV-----IDPKRAKAMKTK- 176

Query:   280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP-PGKSGKR-DFGFIHYAERSSALK 337
               VK ++V  +  +T  EKI+E F   GEV  + +P   K+ KR  F FI + E     K
Sbjct:   177 EPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 236

Query:   338 AVKDTEKYEIDGQV---LEVVLAKPQTDKKTE 366
              ++  +KY   G     ++V ++K Q  ++ +
Sbjct:   237 IME--KKYHNVGLSKCEIKVAMSKEQYQQQQQ 266

 Score = 119 (46.9 bits), Expect = 0.00018, P = 0.00018
 Identities = 25/91 (27%), Positives = 50/91 (54%)

Query:    95 KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVS 154
             K A+ +       ++F+GGL  D  EE +R+     G+V  + L  D ++ + +GF F++
Sbjct:   168 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 227

Query:   155 FRSKEFAKKAIDE-LHSKELKGKTIRCSLSE 184
             F+ +E  KK +++  H+  L    I+ ++S+
Sbjct:   228 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 258


>UNIPROTKB|Q96DU9 [details] [associations]
            symbol:PABPC5 "Polyadenylate-binding protein 5"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
            EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
            PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
            ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
            PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
            DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
            UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
            HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
            PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
            GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
            CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
            Uniprot:Q96DU9
        Length = 382

 Score = 199 (75.1 bits), Expect = 2.5e-13, P = 2.5e-13
 Identities = 67/266 (25%), Positives = 127/266 (47%)

Query:   109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
             +++G L  D +E+ L     P G +   R+ +D  +    G+ +V+FR    A+ A++ +
Sbjct:    20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79

Query:   169 HSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
             +   + GK  R   S+  +RL    +GN+  KN  +    + +  +      I   K   
Sbjct:    80 NFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVC 139

Query:   225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS---WADPKSTPDHSAAASQ 281
             + + ++G+++V + + A A+ +   M N   +L+     +    + + ++    +   + 
Sbjct:   140 DDNGSKGYAYVHFDSLAAANRAIWHM-NG-VRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
                ++VKNI D+   EK+KELF  +G    V +    SGK + FGF+ Y    +A KAV 
Sbjct:   198 FTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVL 257

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
             D     IDG+VL V  A+ + ++  E
Sbjct:   258 DLHGKSIDGKVLYVGRAQKKIERLAE 283

 Score = 132 (51.5 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 29/81 (35%), Positives = 49/81 (60%)

Query:   107 SEVFIGGLPKDASEEDLRDL-CEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
             + VF+  +  D  +E L++L CE  G    V++++D  SG+SKGF FV + + E A+KA+
Sbjct:   199 TNVFVKNIGDDIDDEKLKELFCE-YGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAV 256

Query:   166 DELHSKELKGKTIRCSLSETK 186
              +LH K + GK +    ++ K
Sbjct:   257 LDLHGKSIDGKVLYVGRAQKK 277

 Score = 123 (48.4 bits), Expect = 0.00010, P = 0.00010
 Identities = 47/202 (23%), Positives = 95/202 (47%)

Query:   172 ELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRG 231
             E +   +R     T   +F+ N+  +  +++ +++  + GP  E++++I+D    S+  G
Sbjct:   184 EERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGP-TESVKVIRDASGKSK--G 240

Query:   232 FSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--STPDHSAAASQVKA---- 284
             F FV Y  +  A   ++ +L+ + K +DG    +  A  K     +      +++     
Sbjct:   241 FGFVRYETHEAA---QKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKS 297

Query:   285 ------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSAL 336
                   +Y+KN+ +  + EK+KE F   G ++  KV+M  G+ GK  FG + ++    A 
Sbjct:   298 RPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQ-GK-GFGVVCFSSFEEAT 355

Query:   337 KAVKDTEKYEIDGQVLEVVLAK 358
             KAV +     +  + L V L +
Sbjct:   356 KAVDEMNGRIVGSKPLHVTLGQ 377

 Score = 119 (46.9 bits), Expect = 0.00028, P = 0.00028
 Identities = 36/155 (23%), Positives = 69/155 (44%)

Query:   186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADY 245
             K  L++G++  + TED   K     GP +    + +DP   S   G+ +V +   A A++
Sbjct:    17 KAALYVGDLDPDVTEDMLYKKFRPAGP-LRFTRICRDPVTRSP-LGYGYVNFRFPADAEW 74

Query:   246 SRQKMLNANFKLDGNTP-TISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQ 304
             +   M   NF L    P  + W    S PD     S V  +++KN+  +     +  LF 
Sbjct:    75 ALNTM---NFDLINGKPFRLMW----SQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFS 127

Query:   305 RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
               G +    +    +G + + ++H+   ++A +A+
Sbjct:   128 AFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAI 162


>UNIPROTKB|B4DTC3 [details] [associations]
            symbol:HNRNPD "cDNA FLJ54150, highly similar to
            Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
            complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
            UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
            Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
            Ensembl:ENST00000543098 Uniprot:B4DTC3
        Length = 303

 Score = 184 (69.8 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
 Identities = 47/136 (34%), Positives = 73/136 (53%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++FIGGL  D +++DL+D     G+V +  L  D  +G S+GF FV F+  E   K +D+
Sbjct:    46 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 105

Query:   168 LHSKELKGKTI---RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
                K L GK I   R    +TK    ++F+G +  +  E++ R+     G  VE+IEL  
Sbjct:   106 KEHK-LNGKVIDPKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGE-VESIELPM 163

Query:   222 DPQNPSRNRGFSFVLY 237
             D +   R RGF F+ +
Sbjct:   164 DNKTNKR-RGFCFITF 178

 Score = 158 (60.7 bits), Expect = 6.0e-10, Sum P(2) = 6.0e-10
 Identities = 70/254 (27%), Positives = 113/254 (44%)

Query:   170 SKELKGKTIRCSLSET-KNRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPS 227
             S E +G  I  S +E  + ++FIG +  + T+ + +      G  V+ T++L  DP    
Sbjct:    27 SAESEGAKIDASKNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKL--DPIT-G 83

Query:   228 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYV 287
             R+RGF FVL+  +   D   + M     KL+G        DPK           VK ++V
Sbjct:    84 RSRGFGFVLFKESESVD---KVMDQKEHKLNGKV-----IDPKRAKAMKTK-EPVKKIFV 134

Query:   288 KNIPDNTSTEKIKELFQRHGEVTKVVMP-PGKSGKR-DFGFIHYAERSSALKAVKDTEKY 345
               +  +T  EKI+E F   GEV  + +P   K+ KR  F FI + E     K ++  +KY
Sbjct:   135 GGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME--KKY 192

Query:   346 EIDGQV---LEVVLAKPQTDKKTE----GTFP---YSPGLVPTHLPHAGYGGFAGTPYGS 395
                G     ++V ++K Q  ++ +    G F       G  P+   + GY  +    YG+
Sbjct:   193 HNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQGYGN 252

Query:   396 VG---TGFGVAAGF 406
              G    G+G   G+
Sbjct:   253 YGYNSQGYGGYGGY 266

 Score = 119 (46.9 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
 Identities = 25/91 (27%), Positives = 50/91 (54%)

Query:    95 KHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVS 154
             K A+ +       ++F+GGL  D  EE +R+     G+V  + L  D ++ + +GF F++
Sbjct:   118 KRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFIT 177

Query:   155 FRSKEFAKKAIDE-LHSKELKGKTIRCSLSE 184
             F+ +E  KK +++  H+  L    I+ ++S+
Sbjct:   178 FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSK 208

 Score = 47 (21.6 bits), Expect = 3.0e-13, Sum P(2) = 3.0e-13
 Identities = 10/31 (32%), Positives = 13/31 (41%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAGFQQPMIYGR 414
             GYGG+ G  Y      +G      Q   YG+
Sbjct:   259 GYGGYGGYDYTGYNNYYGYGDYSNQQSGYGK 289


>UNIPROTKB|E9PTS0 [details] [associations]
            symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
            Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
        Length = 331

 Score = 181 (68.8 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
 Identities = 49/172 (28%), Positives = 88/172 (51%)

Query:   105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
             +  ++F+GGL  D S++DL+D     G+V +  +  D  +G S+GF F+ F+     +K 
Sbjct:    72 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKV 131

Query:   165 IDELHSKELKGKTI--RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
             +D+   + L G+ I  + +++  K+   ++F+G +    TE++ R+     G  +E IEL
Sbjct:   132 LDQKEHR-LDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGE-IEAIEL 189

Query:   220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK 270
               DP+   R RGF F+ +          +K+L   F  + G+   I  A PK
Sbjct:   190 PIDPKLNKR-RGFVFITFKEEDPV----KKVLEKKFHTVSGSKCEIKVAQPK 236

 Score = 162 (62.1 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 70/269 (26%), Positives = 121/269 (44%)

Query:   174 KGKTIRCSLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRG 231
             +G  I  S +E    ++F+G +  + ++ + +      G  V+ TI++  DP N  R+RG
Sbjct:    60 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM--DP-NTGRSRG 116

Query:   232 FSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNI 290
             F F+L+ +++    S +K+L+    +LDG        DPK     +     VK ++V  +
Sbjct:   117 FGFILFKDSS----SVEKVLDQKEHRLDGRV-----IDPKKAM--AMKKDPVKKIFVGGL 165

Query:   291 PDNTSTEKIKELFQRHGEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348
                 + EKI+E F + GE+  + +P  P  + +R F FI + E    +K V + + + + 
Sbjct:   166 NPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDP-VKKVLEKKFHTVS 224

Query:   349 GQVLEVVLAKPQTDKKTEGTFPY-SPGLVPTHLPHAGYGGFAGTPYGS-VGTGFGVAAGF 406
             G   E+ +A+P   K+      Y S G    +  + G GG     +    G  +    G+
Sbjct:   225 GSKCEIKVAQP---KEVYQQQQYGSGGRGNRNRGNRGSGGGQSQSWNQGYGNYWNQGYGY 281

Query:   407 QQPMIYGRGPMPSGMHMVPMVLPDGQIGY 435
             QQ    G GP   G    P     G  GY
Sbjct:   282 QQ----GYGPGYGGYDYSPY----GYYGY 302

 Score = 54 (24.1 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSG 420
             GYGG+  +PYG  G G G     Q    YG+     G
Sbjct:   288 GYGGYDYSPYGYYGYGPGYDYS-QGSTNYGKSQRRGG 323


>UNIPROTKB|Q9QX81 [details] [associations]
            symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
            [GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
            evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            [GO:0045893 "positive regulation of transcription, DNA-dependent"
            evidence=ISS] [GO:0003700 "sequence-specific DNA binding
            transcription factor activity" evidence=ISS] [GO:0043565
            "sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
            EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
            GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
            Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
            PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
            GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
            RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
            Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
            Uniprot:Q9QX81
        Length = 332

 Score = 181 (68.8 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
 Identities = 49/172 (28%), Positives = 88/172 (51%)

Query:   105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
             +  ++F+GGL  D S++DL+D     G+V +  +  D  +G S+GF F+ F+     +K 
Sbjct:    73 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKV 132

Query:   165 IDELHSKELKGKTI--RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
             +D+   + L G+ I  + +++  K+   ++F+G +    TE++ R+     G  +E IEL
Sbjct:   133 LDQKEHR-LDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGQFGE-IEAIEL 190

Query:   220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK 270
               DP+   R RGF F+ +          +K+L   F  + G+   I  A PK
Sbjct:   191 PIDPKLNKR-RGFVFITFKEEDPV----KKVLEKKFHTVSGSKCEIKVAQPK 237

 Score = 162 (62.1 bits), Expect = 3.0e-09, P = 3.0e-09
 Identities = 70/269 (26%), Positives = 121/269 (44%)

Query:   174 KGKTIRCSLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRG 231
             +G  I  S +E    ++F+G +  + ++ + +      G  V+ TI++  DP N  R+RG
Sbjct:    61 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM--DP-NTGRSRG 117

Query:   232 FSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNI 290
             F F+L+ +++    S +K+L+    +LDG        DPK     +     VK ++V  +
Sbjct:   118 FGFILFKDSS----SVEKVLDQKEHRLDGRV-----IDPKKAM--AMKKDPVKKIFVGGL 166

Query:   291 PDNTSTEKIKELFQRHGEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348
                 + EKI+E F + GE+  + +P  P  + +R F FI + E    +K V + + + + 
Sbjct:   167 NPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDP-VKKVLEKKFHTVS 225

Query:   349 GQVLEVVLAKPQTDKKTEGTFPY-SPGLVPTHLPHAGYGGFAGTPYGS-VGTGFGVAAGF 406
             G   E+ +A+P   K+      Y S G    +  + G GG     +    G  +    G+
Sbjct:   226 GSKCEIKVAQP---KEVYQQQQYGSGGRGNRNRGNRGSGGGQSQSWNQGYGNYWNQGYGY 282

Query:   407 QQPMIYGRGPMPSGMHMVPMVLPDGQIGY 435
             QQ    G GP   G    P     G  GY
Sbjct:   283 QQ----GYGPGYGGYDYSPY----GYYGY 303

 Score = 54 (24.1 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
 Identities = 14/37 (37%), Positives = 17/37 (45%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSG 420
             GYGG+  +PYG  G G G     Q    YG+     G
Sbjct:   289 GYGGYDYSPYGYYGYGPGYDYS-QGSTNYGKSQRRGG 324


>UNIPROTKB|P51991 [details] [associations]
            symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
            species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
            "ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
            "gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
            Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
            GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
            EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
            HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
            IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
            UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
            IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
            DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
            Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
            KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
            HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
            InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
            GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
            ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
            Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
        Length = 378

 Score = 183 (69.5 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
 Identities = 61/226 (26%), Positives = 103/226 (45%)

Query:   184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
             E   +LFIG +    T+D  R+  E  G   + + +++DPQ   R+RGF FV Y   +C 
Sbjct:    32 EQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCV-VMRDPQT-KRSRGFGFVTY---SCV 86

Query:   244 DYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303
             +     M     K+DG       A  +       A   VK ++V  I ++T    +++ F
Sbjct:    87 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYF 146

Query:   304 QRHGEVTKV-VMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYE-IDGQVLEVVLAKPQ 360
             +++G++  + VM   +SGK R F F+ + +  +  K V   +KY  I+G   EV  A  +
Sbjct:   147 EKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQKYHTINGHNCEVKKALSK 204

Query:   361 TDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGF 406
              + ++ G+     G     +   G  G  G  +G  G  FG   G+
Sbjct:   205 QEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGR-GGNFGGRGGY 249

 Score = 142 (55.0 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
 Identities = 39/153 (25%), Positives = 80/153 (52%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P    ++FIGGL  + +++ LR+  E  G + +  +M+D ++  S+GF FV++   E   
Sbjct:    31 PEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVD 90

Query:   163 KAI----DELHSKELKGK-------TIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
              A+     ++  + ++ K       +++     T  ++F+G + ++  E   R   E  G
Sbjct:    91 AAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYG 150

Query:   212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244
               +ETIE+++D Q+  + RGF+FV + ++   D
Sbjct:   151 K-IETIEVMEDRQS-GKKRGFAFVTFDDHDTVD 181

 Score = 127 (49.8 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
 Identities = 26/89 (29%), Positives = 50/89 (56%)

Query:    83 KPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDK 142
             +P  +V  ++  K    L +     ++F+GG+ +D  E +LRD  E  G +  + +M+D+
Sbjct:   106 EPKRAVSREDSVKPGAHLTV----KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDR 161

Query:   143 ESGESKGFAFVSFRSKEFAKK-AIDELHS 170
             +SG+ +GFAFV+F   +   K  + + H+
Sbjct:   162 QSGKKRGFAFVTFDDHDTVDKIVVQKYHT 190

 Score = 60 (26.2 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query:   377 PTHLPHAGYGGFAGTPYGSVGTGFGVAAGF 406
             P +    GYGG  G  YG+ G G+G   G+
Sbjct:   281 PGYSSRGGYGG-GGPGYGNQGGGYGGGGGY 309

 Score = 55 (24.4 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
 Identities = 16/34 (47%), Positives = 16/34 (47%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAGFQ-QPMIYGRGP 416
             GYGG  G   GS G G G   GF      YG GP
Sbjct:   248 GYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGP 281

 Score = 47 (21.6 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
 Identities = 16/37 (43%), Positives = 17/37 (45%)

Query:   386 GGFAGTPYGSVGT--GFGVAAGFQQPMIYGRGPMPSG 420
             G F G  YG  G    FG  +G QQ   YG  PM  G
Sbjct:   316 GNFGGGNYGGGGNYNDFGNYSG-QQQSNYG--PMKGG 349


>UNIPROTKB|F1N4Q4 [details] [associations]
            symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
            CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
            RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
            Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
            NextBio:20869865 Uniprot:F1N4Q4
        Length = 382

 Score = 198 (74.8 bits), Expect = 3.3e-13, P = 3.3e-13
 Identities = 66/266 (24%), Positives = 127/266 (47%)

Query:   109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
             +++G L  D +E+ L     P G +   R+ +D  +    G+ +V+FR    A+ A++ +
Sbjct:    20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79

Query:   169 HSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
             +   + GK  R   S+  +RL    IGN+  KN  +    + +  +     +I   K   
Sbjct:    80 NFDLINGKPFRLMWSQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVC 139

Query:   225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS---WADPKSTPDHSAAASQ 281
             + + ++G+++V + + A A+ +   M N   +L+     +    + + ++    +   + 
Sbjct:   140 DDNGSKGYAYVHFDSLAAANRAIWHM-NG-VRLNNRQVYVGRFKFPEERAAEVRTRDKAT 197

Query:   282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
                ++VKN  D+   +K+KELF  +G    V +    SGK + FGF+ Y    +A KAV 
Sbjct:   198 FTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVL 257

Query:   341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
             D     IDG+VL V  A+ + ++  E
Sbjct:   258 DLHGKSIDGKVLYVGRAQKKIERLAE 283

 Score = 129 (50.5 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 26/80 (32%), Positives = 46/80 (57%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + VF+     D  ++ L++L    G    V++++D  SG+SKGF FV + + E A+KA+ 
Sbjct:   199 TNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDS-SGKSKGFGFVRYETHEAAQKAVL 257

Query:   167 ELHSKELKGKTIRCSLSETK 186
             +LH K + GK +    ++ K
Sbjct:   258 DLHGKSIDGKVLYVGRAQKK 277

 Score = 129 (50.5 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 47/202 (23%), Positives = 96/202 (47%)

Query:   172 ELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRG 231
             E +   +R     T   +F+ N   +  +D+ +++  + GP  E++++I+D  +  +++G
Sbjct:   184 EERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGP-TESVKVIRD--SSGKSKG 240

Query:   232 FSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK--STPDHSAAASQVKA---- 284
             F FV Y  +  A   ++ +L+ + K +DG    +  A  K     +      +++     
Sbjct:   241 FGFVRYETHEAA---QKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKS 297

Query:   285 ------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSAL 336
                   +Y+KN+ +    EK+KE F   G ++  KV++  G+ GK  FG I ++    A 
Sbjct:   298 RPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVGQ-GK-GFGVICFSSFEEAT 355

Query:   337 KAVKDTEKYEIDGQVLEVVLAK 358
             KAV +     +  + L+V L +
Sbjct:   356 KAVDEMNGRIVGSKPLQVTLGQ 377

 Score = 118 (46.6 bits), Expect = 0.00036, P = 0.00036
 Identities = 35/155 (22%), Positives = 69/155 (44%)

Query:   186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADY 245
             K  L++G++  + TED   K     GP +    + +DP   S   G+ +V +   A A++
Sbjct:    17 KAALYVGDLDPDVTEDMLYKKFRPAGP-LRFTRICRDPVTRSP-LGYGYVNFRFPADAEW 74

Query:   246 SRQKMLNANFKLDGNTP-TISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQ 304
             +   M   NF L    P  + W    S PD     S +  +++KN+  +     +  LF 
Sbjct:    75 ALNTM---NFDLINGKPFRLMW----SQPDDRLRKSGIGNIFIKNLDKSIDNRALFYLFS 127

Query:   305 RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
               G +    +    +G + + ++H+   ++A +A+
Sbjct:   128 AFGSILSCKVVCDDNGSKGYAYVHFDSLAAANRAI 162


>UNIPROTKB|F2Z5B4 [details] [associations]
            symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0000166 "nucleotide binding"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
            GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
            RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
            Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
            Uniprot:F2Z5B4
        Length = 379

 Score = 183 (69.5 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
 Identities = 61/226 (26%), Positives = 103/226 (45%)

Query:   184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
             E   +LFIG +    T+D  R+  E  G   + + +++DPQ   R+RGF FV Y   +C 
Sbjct:    32 EQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCV-VMRDPQT-KRSRGFGFVTY---SCV 86

Query:   244 DYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303
             +     M     K+DG       A  +       A   VK ++V  I ++T    +++ F
Sbjct:    87 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYF 146

Query:   304 QRHGEVTKV-VMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYE-IDGQVLEVVLAKPQ 360
             +++G++  + VM   +SGK R F F+ + +  +  K V   +KY  I+G   EV  A  +
Sbjct:   147 EKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQKYHTINGHNCEVKKALSK 204

Query:   361 TDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGF 406
              + ++ G+     G     +   G  G  G  +G  G  FG   G+
Sbjct:   205 QEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGR-GGNFGGRGGY 249

 Score = 142 (55.0 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
 Identities = 39/153 (25%), Positives = 80/153 (52%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P    ++FIGGL  + +++ LR+  E  G + +  +M+D ++  S+GF FV++   E   
Sbjct:    31 PEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVD 90

Query:   163 KAI----DELHSKELKGK-------TIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
              A+     ++  + ++ K       +++     T  ++F+G + ++  E   R   E  G
Sbjct:    91 AAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYG 150

Query:   212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244
               +ETIE+++D Q+  + RGF+FV + ++   D
Sbjct:   151 K-IETIEVMEDRQS-GKKRGFAFVTFDDHDTVD 181

 Score = 127 (49.8 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
 Identities = 26/89 (29%), Positives = 50/89 (56%)

Query:    83 KPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDK 142
             +P  +V  ++  K    L +     ++F+GG+ +D  E +LRD  E  G +  + +M+D+
Sbjct:   106 EPKRAVSREDSVKPGAHLTV----KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDR 161

Query:   143 ESGESKGFAFVSFRSKEFAKK-AIDELHS 170
             +SG+ +GFAFV+F   +   K  + + H+
Sbjct:   162 QSGKKRGFAFVTFDDHDTVDKIVVQKYHT 190

 Score = 57 (25.1 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query:   377 PTHLPHAGYGGFAGTPYGSVGTGFGVAAG 405
             P +    GYGG  G  YG+ G G+G   G
Sbjct:   281 PGYSSRGGYGG-GGPGYGNQGGGYGGGGG 308

 Score = 55 (24.4 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
 Identities = 16/34 (47%), Positives = 16/34 (47%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAGFQ-QPMIYGRGP 416
             GYGG  G   GS G G G   GF      YG GP
Sbjct:   248 GYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGP 281


>RGD|727807 [details] [associations]
            symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
            species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
            "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
            "ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
            projection" evidence=IDA] [GO:0051028 "mRNA transport"
            evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
            evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
            GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
            HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
            EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
            IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
            RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
            ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
            PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
            UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
            ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
            GO:GO:0051033 Uniprot:Q6URK4
        Length = 379

 Score = 183 (69.5 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
 Identities = 61/226 (26%), Positives = 103/226 (45%)

Query:   184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
             E   +LFIG +    T+D  R+  E  G   + + +++DPQ   R+RGF FV Y   +C 
Sbjct:    32 EQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCV-VMRDPQT-KRSRGFGFVTY---SCV 86

Query:   244 DYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303
             +     M     K+DG       A  +       A   VK ++V  I ++T    +++ F
Sbjct:    87 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYF 146

Query:   304 QRHGEVTKV-VMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYE-IDGQVLEVVLAKPQ 360
             +++G++  + VM   +SGK R F F+ + +  +  K V   +KY  I+G   EV  A  +
Sbjct:   147 EKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQKYHTINGHNCEVKKALSK 204

Query:   361 TDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGF 406
              + ++ G+     G     +   G  G  G  +G  G  FG   G+
Sbjct:   205 QEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGR-GGNFGGRGGY 249

 Score = 142 (55.0 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
 Identities = 39/153 (25%), Positives = 80/153 (52%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P    ++FIGGL  + +++ LR+  E  G + +  +M+D ++  S+GF FV++   E   
Sbjct:    31 PEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVD 90

Query:   163 KAI----DELHSKELKGK-------TIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
              A+     ++  + ++ K       +++     T  ++F+G + ++  E   R   E  G
Sbjct:    91 AAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYG 150

Query:   212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244
               +ETIE+++D Q+  + RGF+FV + ++   D
Sbjct:   151 K-IETIEVMEDRQS-GKKRGFAFVTFDDHDTVD 181

 Score = 127 (49.8 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
 Identities = 26/89 (29%), Positives = 50/89 (56%)

Query:    83 KPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDK 142
             +P  +V  ++  K    L +     ++F+GG+ +D  E +LRD  E  G +  + +M+D+
Sbjct:   106 EPKRAVSREDSVKPGAHLTV----KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDR 161

Query:   143 ESGESKGFAFVSFRSKEFAKK-AIDELHS 170
             +SG+ +GFAFV+F   +   K  + + H+
Sbjct:   162 QSGKKRGFAFVTFDDHDTVDKIVVQKYHT 190

 Score = 57 (25.1 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query:   377 PTHLPHAGYGGFAGTPYGSVGTGFGVAAG 405
             P +    GYGG  G  YG+ G G+G   G
Sbjct:   281 PGYSSRGGYGG-GGPGYGNQGGGYGGGGG 308

 Score = 55 (24.4 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
 Identities = 16/34 (47%), Positives = 16/34 (47%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAGFQ-QPMIYGRGP 416
             GYGG  G   GS G G G   GF      YG GP
Sbjct:   248 GYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGP 281


>UNIPROTKB|E1BEG2 [details] [associations]
            symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
            IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
        Length = 380

 Score = 183 (69.5 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
 Identities = 61/226 (26%), Positives = 103/226 (45%)

Query:   184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
             E   +LFIG +    T+D  R+  E  G   + + +++DPQ   R+RGF FV Y   +C 
Sbjct:    32 EQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCV-VMRDPQT-KRSRGFGFVTY---SCV 86

Query:   244 DYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303
             +     M     K+DG       A  +       A   VK ++V  I ++T    +++ F
Sbjct:    87 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYF 146

Query:   304 QRHGEVTKV-VMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYE-IDGQVLEVVLAKPQ 360
             +++G++  + VM   +SGK R F F+ + +  +  K V   +KY  I+G   EV  A  +
Sbjct:   147 EKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQKYHTINGHNCEVKKALSK 204

Query:   361 TDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGF 406
              + ++ G+     G     +   G  G  G  +G  G  FG   G+
Sbjct:   205 QEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGR-GGNFGGRGGY 249

 Score = 142 (55.0 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
 Identities = 39/153 (25%), Positives = 80/153 (52%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P    ++FIGGL  + +++ LR+  E  G + +  +M+D ++  S+GF FV++   E   
Sbjct:    31 PEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVD 90

Query:   163 KAI----DELHSKELKGK-------TIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
              A+     ++  + ++ K       +++     T  ++F+G + ++  E   R   E  G
Sbjct:    91 AAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYG 150

Query:   212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244
               +ETIE+++D Q+  + RGF+FV + ++   D
Sbjct:   151 K-IETIEVMEDRQS-GKKRGFAFVTFDDHDTVD 181

 Score = 127 (49.8 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
 Identities = 26/89 (29%), Positives = 50/89 (56%)

Query:    83 KPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDK 142
             +P  +V  ++  K    L +     ++F+GG+ +D  E +LRD  E  G +  + +M+D+
Sbjct:   106 EPKRAVSREDSVKPGAHLTV----KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDR 161

Query:   143 ESGESKGFAFVSFRSKEFAKK-AIDELHS 170
             +SG+ +GFAFV+F   +   K  + + H+
Sbjct:   162 QSGKKRGFAFVTFDDHDTVDKIVVQKYHT 190

 Score = 55 (24.4 bits), Expect = 3.4e-13, Sum P(2) = 3.4e-13
 Identities = 16/34 (47%), Positives = 16/34 (47%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAGFQ-QPMIYGRGP 416
             GYGG  G   GS G G G   GF      YG GP
Sbjct:   248 GYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGP 281

 Score = 54 (24.1 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query:   377 PTHLPHAGYGGFAGTPYGSVGTGFGVAAG 405
             P +    GYGG     YG+ G G+G   G
Sbjct:   281 PGYSSRGGYGGGGPGGYGNQGGGYGGGGG 309


>UNIPROTKB|F1NBB6 [details] [associations]
            symbol:LOC100859627 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
            Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
            EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
            EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
            IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
        Length = 310

 Score = 194 (73.4 bits), Expect = 3.8e-13, P = 3.8e-13
 Identities = 64/228 (28%), Positives = 105/228 (46%)

Query:   184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
             E   +LFIG +    T+D  R+  E  G   + + +++DPQ   R+RGF FV Y   +C 
Sbjct:    18 EQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCV-VMRDPQT-KRSRGFGFVTY---SCV 72

Query:   244 DYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303
             +     M     K+DG       A  +       A   VK ++V  I ++T    ++E F
Sbjct:    73 EEVDAAMSARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYF 132

Query:   304 QRHGEVTKV-VMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYE-IDGQVLEVVLAKPQ 360
             +++G++  + VM   +SGK R F F+ + +  +  K V   +KY  I+G   EV  A  +
Sbjct:   133 EKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQKYHTINGHNCEVKKALSK 190

Query:   361 TDKKTEGTFPYSPGLVPTHLPHAGYGGFAGT--P-YGSVGTGFGVAAG 405
              + +T  +     G     +    +GG  G   P YG+ G G+G   G
Sbjct:   191 QEMQTASSQRGRGGGSGNFMGRGNFGGGGGGGGPGYGNPGGGYGGGGG 238

 Score = 145 (56.1 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 41/154 (26%), Positives = 81/154 (52%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P    ++FIGGL  + +++ LR+  E  G + +  +M+D ++  S+GF FV++   E   
Sbjct:    17 PEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVD 76

Query:   163 KAIDELHSKELKGKTI--RCSLSE----------TKNRLFIGNVPKNWTEDEFRKVIEDV 210
              A+     K + G+ +  + ++S           T  ++F+G + ++  E   R+  E  
Sbjct:    77 AAMSARPHK-VDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLREYFEKY 135

Query:   211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244
             G  +ETIE+++D Q+  + RGF+FV + ++   D
Sbjct:   136 GK-IETIEVMEDRQS-GKKRGFAFVTFDDHDTVD 167

 Score = 123 (48.4 bits), Expect = 6.7e-05, P = 6.7e-05
 Identities = 25/89 (28%), Positives = 50/89 (56%)

Query:    83 KPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDK 142
             +P  +V  ++  K    L +     ++F+GG+ +D  E +LR+  E  G +  + +M+D+
Sbjct:    92 EPKRAVSREDSVKPGAHLTV----KKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDR 147

Query:   143 ESGESKGFAFVSFRSKEFAKK-AIDELHS 170
             +SG+ +GFAFV+F   +   K  + + H+
Sbjct:   148 QSGKKRGFAFVTFDDHDTVDKIVVQKYHT 176


>UNIPROTKB|Q6DCB7 [details] [associations]
            symbol:dnd1 "Dead end protein homolog 1" species:8355
            "Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
            "cytoplasm" evidence=ISS] [GO:0017091 "AU-rich element binding"
            evidence=ISS] [GO:0060965 "negative regulation of gene silencing by
            miRNA" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
            GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0017091 GO:GO:0060965 HOVERGEN:HBG051370 EMBL:BC078132
            EMBL:AY321494 UniGene:Xl.29785 ProteinModelPortal:Q6DCB7
            Xenbase:XB-GENE-1015636 Uniprot:Q6DCB7
        Length = 371

 Score = 197 (74.4 bits), Expect = 3.9e-13, P = 3.9e-13
 Identities = 53/165 (32%), Positives = 89/165 (53%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P +GSEVFIG +P+D  E+ L  L + +G ++E RLM    SG ++GFA+  + S+  A 
Sbjct:    73 PVSGSEVFIGKIPQDIYEDKLIPLFQSVGKLYEFRLMMTF-SGLNRGFAYARYISRRQAI 131

Query:   163 KAIDELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
              AI  L+  E+ KG  I    S  K+ L +  +P N+ E+  + V+++V  GV +I L  
Sbjct:   132 SAIMSLNGFEITKGCCIVVCRSTEKSELALDGLPGNFDENMLKNVLDEVTSGVSSISLHP 191

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266
              P   S+    + V Y ++  A  +++ +   +  L G   T++W
Sbjct:   192 SPTKESQV--LAVVKYDSHRAAAMAKKTLCEGSPILPGLPLTVNW 234


>UNIPROTKB|Q12926 [details] [associations]
            symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
            "protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
            evidence=TAS] [GO:0006355 "regulation of transcription,
            DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
            Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
            HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
            EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
            RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
            UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
            STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
            PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
            Ensembl:ENST00000380110 Ensembl:ENST00000380117
            Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
            KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
            GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
            neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
            OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
            ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
            Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
        Length = 359

 Score = 171 (65.3 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
 Identities = 51/184 (27%), Positives = 97/184 (52%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + + +  LP++ ++E+L+ L   IG++   +L++DK +G+S G+ FV++   + A+KAI+
Sbjct:    39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98

Query:   167 ELHSKELKGKTIRCSLSETKN------RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
              L+   L+ KTI+ S +   +       L++  +PK  T+ E  ++    G  + T  ++
Sbjct:    99 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRIL 157

Query:   221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT-P-TISWADPKSTPDHSAA 278
              D Q    +RG  F+ +     A+ +  K LN   K  G T P T+ +A+  S   + A 
Sbjct:   158 VD-QVTGISRGVGFIRFDKRIEAEEAI-KGLNGQ-KPPGATEPITVKFANNPSQKTNQAI 214

Query:   279 ASQV 282
              SQ+
Sbjct:   215 LSQL 218

 Score = 148 (57.2 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 41/159 (25%), Positives = 86/159 (54%)

Query:   184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
             ++K  L +  +P+N T++E + +   +G  +E+ +L++D +   ++ G+ FV Y +   A
Sbjct:    36 DSKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDA 93

Query:   244 DYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303
             + +    LN   +L   T  +S+A P      S+A+ +   LYV  +P   + +++++LF
Sbjct:    94 EKAINT-LNG-LRLQTKTIKVSYARP------SSASIRDANLYVSGLPKTMTQKELEQLF 145

Query:   304 QRHGEV-TKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
              ++G + T  ++    +G  R  GFI + +R  A +A+K
Sbjct:   146 SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184

 Score = 67 (28.6 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
 Identities = 20/81 (24%), Positives = 36/81 (44%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK-RDFGFIHYAERSSALKAVKDT 342
             ++V N+  +     + ++F   G VT V V+    + K + FGF+       A  A+   
Sbjct:   278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337

Query:   343 EKYEIDGQVLEVVLAKPQTDK 363
               Y +  +VL+V     +T K
Sbjct:   338 NGYRLGDRVLQVSFKTNKTHK 358


>MGI|MGI:1100887 [details] [associations]
            symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
            acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
            HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
            IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
            ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
            PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
            Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
            InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
            GermOnline:ENSMUSG00000008489 Uniprot:Q60899
        Length = 360

 Score = 171 (65.3 bits), Expect = 4.0e-13, Sum P(2) = 4.0e-13
 Identities = 51/184 (27%), Positives = 97/184 (52%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + + +  LP++ ++E+L+ L   IG++   +L++DK +G+S G+ FV++   + A+KAI+
Sbjct:    39 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 98

Query:   167 ELHSKELKGKTIRCSLSETKN------RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
              L+   L+ KTI+ S +   +       L++  +PK  T+ E  ++    G  + T  ++
Sbjct:    99 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRIL 157

Query:   221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT-P-TISWADPKSTPDHSAA 278
              D Q    +RG  F+ +     A+ +  K LN   K  G T P T+ +A+  S   + A 
Sbjct:   158 VD-QVTGISRGVGFIRFDKRIEAEEAI-KGLNGQ-KPPGATEPITVKFANNPSQKTNQAI 214

Query:   279 ASQV 282
              SQ+
Sbjct:   215 LSQL 218

 Score = 148 (57.2 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 41/159 (25%), Positives = 86/159 (54%)

Query:   184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
             ++K  L +  +P+N T++E + +   +G  +E+ +L++D +   ++ G+ FV Y +   A
Sbjct:    36 DSKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDA 93

Query:   244 DYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303
             + +    LN   +L   T  +S+A P      S+A+ +   LYV  +P   + +++++LF
Sbjct:    94 EKAINT-LNG-LRLQTKTIKVSYARP------SSASIRDANLYVSGLPKTMTQKELEQLF 145

Query:   304 QRHGEV-TKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
              ++G + T  ++    +G  R  GFI + +R  A +A+K
Sbjct:   146 SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184

 Score = 67 (28.6 bits), Expect = 4.0e-13, Sum P(2) = 4.0e-13
 Identities = 20/81 (24%), Positives = 36/81 (44%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK-RDFGFIHYAERSSALKAVKDT 342
             ++V N+  +     + ++F   G VT V V+    + K + FGF+       A  A+   
Sbjct:   279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338

Query:   343 EKYEIDGQVLEVVLAKPQTDK 363
               Y +  +VL+V     +T K
Sbjct:   339 NGYRLGDRVLQVSFKTNKTHK 359


>UNIPROTKB|H0Y623 [details] [associations]
            symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
            "Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:HSAYLNP
            EMBL:AL589765 HGNC:HGNC:11967 ProteinModelPortal:H0Y623
            PRIDE:H0Y623 Ensembl:ENST00000420342 Bgee:H0Y623 Uniprot:H0Y623
        Length = 466

 Score = 168 (64.2 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
 Identities = 47/164 (28%), Positives = 93/164 (56%)

Query:   114 LPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KE 172
             +P+   E+DL+ + E  G +FE+ ++KDK +G  KG AF+++ +++ A KA   LH  K 
Sbjct:    16 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKT 75

Query:   173 LKG--KTIRCSLSETKNR----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
             L G  + I+   +++++R    LF+G + K  T+++ RK+ E  G  ++   +++ P   
Sbjct:    76 LPGMNRPIQVKPADSESRGDRKLFVGMLGKQQTDEDVRKMFEPFGT-IDECTVLRGPDGT 134

Query:   227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT--ISWAD 268
             S+  G +FV +  +A A  +    L+++  L G + +  + +AD
Sbjct:   135 SK--GCAFVKFQTHAEAQ-AAINTLHSSRTLPGASSSLVVKFAD 175

 Score = 119 (46.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
 Identities = 27/69 (39%), Positives = 44/69 (63%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++F+G L K  ++ED+R + EP G + E  +++  + G SKG AFV F++   A+ AI+ 
Sbjct:    97 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINT 155

Query:   168 LHS-KELKG 175
             LHS + L G
Sbjct:   156 LHSSRTLPG 164

 Score = 118 (46.6 bits), Expect = 0.00050, P = 0.00050
 Identities = 25/109 (22%), Positives = 54/109 (49%)

Query:    79 EEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRL 138
             ++   P     + ++ +  Q     P+G  +FI  LP++ ++ ++  +  P G V   ++
Sbjct:   353 QQPPPPPQQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKV 412

Query:   139 MKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
               D+ + +SK F FVSF +   A+ AI  ++  ++  K ++  L   K+
Sbjct:   413 FVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 461

 Score = 75 (31.5 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
 Identities = 18/78 (23%), Positives = 41/78 (52%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
             +++ ++P   +  +I ++F   G V   KV +    +  + FGF+ +   +SA  A++  
Sbjct:   383 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 442

Query:   343 EKYEIDGQVLEVVLAKPQ 360
               ++I  + L+V L +P+
Sbjct:   443 NGFQIGMKRLKVQLKRPK 460

 Score = 52 (23.4 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query:   189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
             +FI ++P+ +T+ E  ++    G  +     +    N S+   F FV + N A A  + Q
Sbjct:   383 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKC--FGFVSFDNPASAQAAIQ 440

Query:   249 KM 250
              M
Sbjct:   441 AM 442


>UNIPROTKB|K7EQ02 [details] [associations]
            symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
            "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
            Ensembl:ENST00000592453 Uniprot:K7EQ02
        Length = 225

 Score = 178 (67.7 bits), Expect = 4.6e-13, P = 4.6e-13
 Identities = 51/187 (27%), Positives = 88/187 (47%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI-D 166
             ++F+GGL    ++E LR      G+V +  +MKDK + +S+GF FV F+        +  
Sbjct:    11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70

Query:   167 ELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
               H+ + + +    S +   N++F+G +P N  E E R+  +  G   E + +I D +  
Sbjct:    71 RPHTLDGRNQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVV-MIYDAEK- 128

Query:   227 SRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADP---KSTPDHSAAASQV 282
              R RGF F+ + +    D +    +N +F  + G    +  A+P   KS       ASQ 
Sbjct:   129 QRPRGFGFITFEDEQSVDQA----VNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQW 184

Query:   283 KALYVKN 289
              +  V N
Sbjct:   185 GSRVVPN 191

 Score = 171 (65.3 bits), Expect = 2.7e-12, P = 2.7e-12
 Identities = 62/219 (28%), Positives = 108/219 (49%)

Query:   188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247
             +LF+G +  + T++  R      G  V+ + ++KD +  +++RGF FV + +  C     
Sbjct:    11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCV-IMKD-KTTNQSRGFGFVKFKDPNCVG--- 65

Query:   248 QKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG 307
               + +    LDG         P+S  D+S +      ++V  IP N    +++E F++ G
Sbjct:    66 TVLASRPHTLDGRNQK----GPRS--DNSKS----NKIFVGGIPHNCGETELREYFKKFG 115

Query:   308 EVTKVVM--PPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKT 365
              VT+VVM     K   R FGFI + +  S  +AV +   ++I G+ +EV  A+P+ D K+
Sbjct:   116 VVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV-NMHFHDIMGKKVEVKRAEPR-DSKS 173

Query:   366 EGTFPYSPGLVPTH---LPHAGYGGFAGTPYGSVGTGFG 401
             +   P  PG        +P+A   G+AG P  +   G+G
Sbjct:   174 QA--PGQPGASQWGSRVVPNAA-NGWAGQPPPTWQQGYG 209

 Score = 126 (49.4 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 22/81 (27%), Positives = 48/81 (59%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             +++F+GG+P +  E +LR+  +  G V EV ++ D E    +GF F++F  ++   +A++
Sbjct:    91 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 150

Query:   167 ELHSKELKGKTIRCSLSETKN 187
              +H  ++ GK +    +E ++
Sbjct:   151 -MHFHDIMGKKVEVKRAEPRD 170


>UNIPROTKB|B1AM49 [details] [associations]
            symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
            sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
            InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
            PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
            UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
            Ensembl:ENST00000359598 Uniprot:B1AM49
        Length = 387

 Score = 171 (65.3 bits), Expect = 5.8e-13, Sum P(2) = 5.8e-13
 Identities = 51/184 (27%), Positives = 97/184 (52%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + + +  LP++ ++E+L+ L   IG++   +L++DK +G+S G+ FV++   + A+KAI+
Sbjct:    67 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 126

Query:   167 ELHSKELKGKTIRCSLSETKN------RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
              L+   L+ KTI+ S +   +       L++  +PK  T+ E  ++    G  + T  ++
Sbjct:   127 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRIL 185

Query:   221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT-P-TISWADPKSTPDHSAA 278
              D Q    +RG  F+ +     A+ +  K LN   K  G T P T+ +A+  S   + A 
Sbjct:   186 VD-QVTGISRGVGFIRFDKRIEAEEAI-KGLNGQ-KPPGATEPITVKFANNPSQKTNQAI 242

Query:   279 ASQV 282
              SQ+
Sbjct:   243 LSQL 246

 Score = 148 (57.2 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 41/159 (25%), Positives = 86/159 (54%)

Query:   184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
             ++K  L +  +P+N T++E + +   +G  +E+ +L++D +   ++ G+ FV Y +   A
Sbjct:    64 DSKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDA 121

Query:   244 DYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303
             + +    LN   +L   T  +S+A P      S+A+ +   LYV  +P   + +++++LF
Sbjct:   122 EKAINT-LNG-LRLQTKTIKVSYARP------SSASIRDANLYVSGLPKTMTQKELEQLF 173

Query:   304 QRHGEV-TKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
              ++G + T  ++    +G  R  GFI + +R  A +A+K
Sbjct:   174 SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 212

 Score = 67 (28.6 bits), Expect = 5.8e-13, Sum P(2) = 5.8e-13
 Identities = 20/81 (24%), Positives = 36/81 (44%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK-RDFGFIHYAERSSALKAVKDT 342
             ++V N+  +     + ++F   G VT V V+    + K + FGF+       A  A+   
Sbjct:   306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365

Query:   343 EKYEIDGQVLEVVLAKPQTDK 363
               Y +  +VL+V     +T K
Sbjct:   366 NGYRLGDRVLQVSFKTNKTHK 386


>UNIPROTKB|E2RI94 [details] [associations]
            symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
            EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
            Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
        Length = 388

 Score = 171 (65.3 bits), Expect = 5.9e-13, Sum P(2) = 5.9e-13
 Identities = 51/184 (27%), Positives = 97/184 (52%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + + +  LP++ ++E+L+ L   IG++   +L++DK +G+S G+ FV++   + A+KAI+
Sbjct:    68 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 127

Query:   167 ELHSKELKGKTIRCSLSETKN------RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
              L+   L+ KTI+ S +   +       L++  +PK  T+ E  ++    G  + T  ++
Sbjct:   128 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRIL 186

Query:   221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT-P-TISWADPKSTPDHSAA 278
              D Q    +RG  F+ +     A+ +  K LN   K  G T P T+ +A+  S   + A 
Sbjct:   187 VD-QVTGISRGVGFIRFDKRIEAEEAI-KGLNGQ-KPPGATEPITVKFANNPSQKTNQAI 243

Query:   279 ASQV 282
              SQ+
Sbjct:   244 LSQL 247

 Score = 148 (57.2 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 41/159 (25%), Positives = 86/159 (54%)

Query:   184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
             ++K  L +  +P+N T++E + +   +G  +E+ +L++D +   ++ G+ FV Y +   A
Sbjct:    65 DSKTNLIVNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDA 122

Query:   244 DYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303
             + +    LN   +L   T  +S+A P      S+A+ +   LYV  +P   + +++++LF
Sbjct:   123 EKAINT-LNG-LRLQTKTIKVSYARP------SSASIRDANLYVSGLPKTMTQKELEQLF 174

Query:   304 QRHGEV-TKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
              ++G + T  ++    +G  R  GFI + +R  A +A+K
Sbjct:   175 SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 213

 Score = 67 (28.6 bits), Expect = 5.9e-13, Sum P(2) = 5.9e-13
 Identities = 20/81 (24%), Positives = 36/81 (44%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK-RDFGFIHYAERSSALKAVKDT 342
             ++V N+  +     + ++F   G VT V V+    + K + FGF+       A  A+   
Sbjct:   307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366

Query:   343 EKYEIDGQVLEVVLAKPQTDK 363
               Y +  +VL+V     +T K
Sbjct:   367 NGYRLGDRVLQVSFKTNKTHK 387


>UNIPROTKB|A1L544 [details] [associations]
            symbol:TNRC4 "Trinucleotide repeat containing 4"
            species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00560000076837 UniGene:Bt.18201 HOVERGEN:HBG002295
            EMBL:DAAA02007247 EMBL:BT029831 IPI:IPI00906974 SMR:A1L544
            Ensembl:ENSBTAT00000056432 HOGENOM:HOG000220928 Uniprot:A1L544
        Length = 139

 Score = 177 (67.4 bits), Expect = 6.0e-13, P = 6.0e-13
 Identities = 40/133 (30%), Positives = 79/133 (59%)

Query:   104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
             P+  ++F+G +P+   E+DL+ + E  G +FE+ ++KDK +G  KG AF+++ +++ A K
Sbjct:     4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALK 63

Query:   164 AIDELHS-KELKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVE 215
             A   LH  K L G  + I+   +++++R     LF+G + K  T+++ RK+ E  G  ++
Sbjct:    64 AQSALHEQKTLPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-ID 122

Query:   216 TIELIKDPQNPSR 228
                +++ P   S+
Sbjct:   123 ECTVLRGPDGTSK 135


>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
            symbol:hnrpdl "heterogeneous nuclear
            ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
            "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
            evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
            PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
            eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
            CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
            OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
            RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
            Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
            InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
        Length = 296

 Score = 177 (67.4 bits), Expect = 6.1e-13, Sum P(2) = 6.1e-13
 Identities = 58/200 (29%), Positives = 92/200 (46%)

Query:    78 VEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVR 137
             ++ EE+   S  E  +           +  ++FIGGL  D S++DL D     G+V +  
Sbjct:     1 MQAEEQGDFSTDEFPEGSKINASKNQEDDGKMFIGGLSWDTSKKDLTDYLSRFGEVLDCT 60

Query:   138 LMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI---RCSL---SETKNRLFI 191
             +  D  +G S+GF FV F+  E   + + EL   +L GK I   R       E   ++F+
Sbjct:    61 IKTDPLTGRSRGFGFVLFKDAESVDRVL-ELTEHKLDGKLIDPKRAKAIKGKEPPKKVFV 119

Query:   192 GNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKML 251
             G +  + TE++ R+     G  +E+IEL  D +   R RGF FV +      +   QK+L
Sbjct:   120 GGLSPDITEEQLREYFGVYGE-IESIELPTDTKTNER-RGFCFVTF----ALEEPVQKLL 173

Query:   252 -NANFKLDGNTPTISWADPK 270
              N   ++      I  A PK
Sbjct:   174 ENRYHQIGSGKCEIKVAQPK 193

 Score = 119 (46.9 bits), Expect = 0.00017, P = 0.00017
 Identities = 60/246 (24%), Positives = 104/246 (42%)

Query:   174 KGKTIRCSLS-ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRG 231
             +G  I  S + E   ++FIG +  + ++ +    +   G  ++ TI+   DP    R+RG
Sbjct:    16 EGSKINASKNQEDDGKMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKT--DPLT-GRSRG 72

Query:   232 FSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIP 291
             F FVL+ +    D  R   L  + KLDG        DPK            K ++V  + 
Sbjct:    73 FGFVLFKDAESVD--RVLELTEH-KLDGKL-----IDPKRAKAIKGKEPP-KKVFVGGLS 123

Query:   292 DNTSTEKIKELFQRHGEVTKVVMPPG-KSG-KRDFGFIHYAERSSALKAVKDTEKYEIDG 349
              + + E+++E F  +GE+  + +P   K+  +R F F+ +A      K +++   ++I  
Sbjct:   124 PDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKLLEN-RYHQIGS 182

Query:   350 QVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQP 409
                E+ +A+P+   + +       G         G GGF G   G  G GF         
Sbjct:   183 GKCEIKVAQPKEVYRQQQNRDRGFG--------GGRGGFRGR--GGRGQGFNQGYNNYYG 232

Query:   410 MIYGRG 415
               YG G
Sbjct:   233 QNYGGG 238

 Score = 52 (23.4 bits), Expect = 6.1e-13, Sum P(2) = 6.1e-13
 Identities = 13/44 (29%), Positives = 18/44 (40%)

Query:   384 GYGGFAGTPYGSVG-TGFGVAAGFQ----QPMIYGRGPMPSGMH 422
             GY G++G  Y       +G   G+     Q   YG+    SG H
Sbjct:   246 GYNGYSGYDYSGYNYQNYGYGQGYDDYSGQQSSYGKASRDSGNH 289


>RGD|628611 [details] [associations]
            symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
            Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
            UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
            PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
            ArrayExpress:Q8CH84 Genevestigator:Q8CH84
            GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
        Length = 359

 Score = 169 (64.5 bits), Expect = 6.7e-13, Sum P(2) = 6.7e-13
 Identities = 51/177 (28%), Positives = 94/177 (53%)

Query:   114 LPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL 173
             LP++ ++E+L+ L   IG++   +L++DK +G+S G+ FV++   + A+KAI+ L+   L
Sbjct:    46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105

Query:   174 KGKTIRCSLSETKN------RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS 227
             + KTI+ S +   +       L++  +PK  T+ E  ++    G  + T  ++ D Q   
Sbjct:   106 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTG 163

Query:   228 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT-P-TISWADPKSTPDHSAAASQV 282
              +RG  F+ +     A+ +  K LN   K  G T P T+ +A+  S   + A  SQ+
Sbjct:   164 ISRGVGFIRFDKRIEAEEAI-KGLNGQ-KPPGATEPITVKFANNPSQKTNQAILSQL 218

 Score = 142 (55.0 bits), Expect = 6.7e-07, P = 6.7e-07
 Identities = 41/159 (25%), Positives = 85/159 (53%)

Query:   184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
             ++K  L    +P+N T++E + +   +G  +E+ +L++D +   ++ G+ FV Y +   A
Sbjct:    36 DSKTNLIDNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDA 93

Query:   244 DYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303
             + +    LN   +L   T  +S+A P      S+A+ +   LYV  +P   + +++++LF
Sbjct:    94 EKAINT-LNG-LRLQTKTIKVSYARP------SSASIRDANLYVSGLPKTMTQKELEQLF 145

Query:   304 QRHGEV-TKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
              ++G + T  ++    +G  R  GFI + +R  A +A+K
Sbjct:   146 SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184

 Score = 101 (40.6 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
 Identities = 20/71 (28%), Positives = 41/71 (57%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++ GLPK  ++++L  L    G +   R++ D+ +G S+G  F+ F  +  A++AI 
Sbjct:   125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184

Query:   167 ELHSKELKGKT 177
              L+ ++  G T
Sbjct:   185 GLNGQKPPGAT 195

 Score = 67 (28.6 bits), Expect = 6.7e-13, Sum P(2) = 6.7e-13
 Identities = 20/81 (24%), Positives = 36/81 (44%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK-RDFGFIHYAERSSALKAVKDT 342
             ++V N+  +     + ++F   G VT V V+    + K + FGF+       A  A+   
Sbjct:   278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337

Query:   343 EKYEIDGQVLEVVLAKPQTDK 363
               Y +  +VL+V     +T K
Sbjct:   338 NGYRLGDRVLQVSFKTNKTHK 358


>UNIPROTKB|Q8CH84 [details] [associations]
            symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
            eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
            TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
            UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
            PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
            ArrayExpress:Q8CH84 Genevestigator:Q8CH84
            GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
        Length = 359

 Score = 169 (64.5 bits), Expect = 6.7e-13, Sum P(2) = 6.7e-13
 Identities = 51/177 (28%), Positives = 94/177 (53%)

Query:   114 LPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL 173
             LP++ ++E+L+ L   IG++   +L++DK +G+S G+ FV++   + A+KAI+ L+   L
Sbjct:    46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105

Query:   174 KGKTIRCSLSETKN------RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPS 227
             + KTI+ S +   +       L++  +PK  T+ E  ++    G  + T  ++ D Q   
Sbjct:   106 QTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRILVD-QVTG 163

Query:   228 RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT-P-TISWADPKSTPDHSAAASQV 282
              +RG  F+ +     A+ +  K LN   K  G T P T+ +A+  S   + A  SQ+
Sbjct:   164 ISRGVGFIRFDKRIEAEEAI-KGLNGQ-KPPGATEPITVKFANNPSQKTNQAILSQL 218

 Score = 142 (55.0 bits), Expect = 6.7e-07, P = 6.7e-07
 Identities = 41/159 (25%), Positives = 85/159 (53%)

Query:   184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
             ++K  L    +P+N T++E + +   +G  +E+ +L++D +   ++ G+ FV Y +   A
Sbjct:    36 DSKTNLIDNYLPQNMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDA 93

Query:   244 DYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303
             + +    LN   +L   T  +S+A P      S+A+ +   LYV  +P   + +++++LF
Sbjct:    94 EKAINT-LNG-LRLQTKTIKVSYARP------SSASIRDANLYVSGLPKTMTQKELEQLF 145

Query:   304 QRHGEV-TKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
              ++G + T  ++    +G  R  GFI + +R  A +A+K
Sbjct:   146 SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184

 Score = 101 (40.6 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
 Identities = 20/71 (28%), Positives = 41/71 (57%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++ GLPK  ++++L  L    G +   R++ D+ +G S+G  F+ F  +  A++AI 
Sbjct:   125 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIK 184

Query:   167 ELHSKELKGKT 177
              L+ ++  G T
Sbjct:   185 GLNGQKPPGAT 195

 Score = 67 (28.6 bits), Expect = 6.7e-13, Sum P(2) = 6.7e-13
 Identities = 20/81 (24%), Positives = 36/81 (44%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK-RDFGFIHYAERSSALKAVKDT 342
             ++V N+  +     + ++F   G VT V V+    + K + FGF+       A  A+   
Sbjct:   278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337

Query:   343 EKYEIDGQVLEVVLAKPQTDK 363
               Y +  +VL+V     +T K
Sbjct:   338 NGYRLGDRVLQVSFKTNKTHK 358


>MGI|MGI:1355299 [details] [associations]
            symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
            D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
            "double-stranded DNA binding" evidence=ISO] [GO:0003697
            "single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
            binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
            [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
            RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
            expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
            evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
            GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
            Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
            HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
            EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
            IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
            SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
            PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
            CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
        Length = 301

 Score = 165 (63.1 bits), Expect = 6.8e-13, Sum P(2) = 6.8e-13
 Identities = 50/170 (29%), Positives = 82/170 (48%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++FIGGL  D S++DL +     G+V +  +  D  +G S+GF FV F+      K + E
Sbjct:    30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVL-E 88

Query:   168 LHSKELKGKTI---RCSL---SETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
             L   +L GK I   R       E   ++F+G +  + +E++ ++     G  +E IEL  
Sbjct:    89 LKEHKLDGKLIDPKRAKALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAFGE-IENIELPM 147

Query:   222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT-ISWADPK 270
             D +   R RGF F+ Y +        +K+L + +   G+    I  A PK
Sbjct:   148 DTKTNER-RGFCFITYTDEEPV----KKLLESRYHQIGSGKCEIKVAQPK 192

 Score = 142 (55.0 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
 Identities = 53/192 (27%), Positives = 93/192 (48%)

Query:   174 KGKTIRCSLSETKN-RLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRG 231
             +G  I  S ++  + ++FIG +  + ++ +  + +   G  V+ TI+   DP    R+RG
Sbjct:    15 EGSKINASKNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKT--DPVT-GRSRG 71

Query:   232 FSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNI 290
             F FVL+ + A  D    K+L     KLDG        DPK            K ++V  +
Sbjct:    72 FGFVLFKDAASVD----KVLELKEHKLDGKL-----IDPKRAKALKGKEPP-KKVFVGGL 121

Query:   291 PDNTSTEKIKELFQRHGEVTKVVMPPG-KSG-KRDFGFIHYAERSSALKAVKDTEKYEID 348
               +TS E+IKE F   GE+  + +P   K+  +R F FI Y +    +K + ++  ++I 
Sbjct:   122 SPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEP-VKKLLESRYHQIG 180

Query:   349 GQVLEVVLAKPQ 360
                 E+ +A+P+
Sbjct:   181 SGKCEIKVAQPK 192

 Score = 119 (46.9 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
 Identities = 23/74 (31%), Positives = 42/74 (56%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             PP   +VF+GGL  D SEE +++     G++  + L  D ++ E +GF F+++  +E  K
Sbjct:   112 PPK--KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVK 169

Query:   163 KAIDELHSKELKGK 176
             K ++  + +   GK
Sbjct:   170 KLLESRYHQIGSGK 183

 Score = 67 (28.6 bits), Expect = 6.8e-13, Sum P(2) = 6.8e-13
 Identities = 16/43 (37%), Positives = 21/43 (48%)

Query:   382 HAGYGGF--AGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMH 422
             ++GYGG+   G  YG+ G G G A    Q   YG+     G H
Sbjct:   252 YSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKASRGGGNH 294


>UNIPROTKB|F1ST15 [details] [associations]
            symbol:CELF3 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0030317 "sperm motility"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
            "spermatogenesis" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
            splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
            binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
            Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
            GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0007283 GO:GO:0003723 GO:GO:0030317 GO:GO:0048026
            GeneTree:ENSGT00560000076837 OMA:HSAYLNP GO:GO:0000381
            EMBL:CU457723 Ensembl:ENSSSCT00000007252 Uniprot:F1ST15
        Length = 465

 Score = 166 (63.5 bits), Expect = 7.1e-13, Sum P(2) = 7.1e-13
 Identities = 47/165 (28%), Positives = 93/165 (56%)

Query:   114 LPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KE 172
             +P+   E+DL+ + E  G +FE+ ++KDK +G  KG AF+++ +++ A KA   LH  K 
Sbjct:    15 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKT 74

Query:   173 LKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
             L G  + I+   +++++R     LF+G + K  T+++ RK+ E  G  ++   +++ P  
Sbjct:    75 LPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-IDECTVLRGPDG 133

Query:   226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT--ISWAD 268
              S+  G +FV +  +A A  +    L+++  L G + +  + +AD
Sbjct:   134 TSK--GCAFVKFQTHAEAQ-AAINTLHSSRTLPGASSSLVVKFAD 175

 Score = 122 (48.0 bits), Expect = 0.00018, P = 0.00018
 Identities = 26/110 (23%), Positives = 55/110 (50%)

Query:    78 VEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVR 137
             V ++  P     + ++ +  Q     P+G  +FI  LP++ ++ ++  +  P G V   +
Sbjct:   351 VAQQPPPPPQQQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAK 410

Query:   138 LMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
             +  D+ + +SK F FVSF +   A+ AI  ++  ++  K ++  L   K+
Sbjct:   411 VFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 460

 Score = 119 (46.9 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
 Identities = 27/69 (39%), Positives = 44/69 (63%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++F+G L K  ++ED+R + EP G + E  +++  + G SKG AFV F++   A+ AI+ 
Sbjct:    97 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINT 155

Query:   168 LHS-KELKG 175
             LHS + L G
Sbjct:   156 LHSSRTLPG 164

 Score = 75 (31.5 bits), Expect = 7.1e-13, Sum P(2) = 7.1e-13
 Identities = 18/78 (23%), Positives = 41/78 (52%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
             +++ ++P   +  +I ++F   G V   KV +    +  + FGF+ +   +SA  A++  
Sbjct:   382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 441

Query:   343 EKYEIDGQVLEVVLAKPQ 360
               ++I  + L+V L +P+
Sbjct:   442 NGFQIGMKRLKVQLKRPK 459

 Score = 52 (23.4 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query:   189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
             +FI ++P+ +T+ E  ++    G  +     +    N S+   F FV + N A A  + Q
Sbjct:   382 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKC--FGFVSFDNPASAQAAIQ 439

Query:   249 KM 250
              M
Sbjct:   440 AM 441


>ZFIN|ZDB-GENE-070122-4 [details] [associations]
            symbol:rbm45 "RNA binding motif protein 45"
            species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 ZFIN:ZDB-GENE-070122-4 GO:GO:0000166
            Gene3D:3.30.70.330 GO:GO:0003676 CTD:129831 eggNOG:NOG145324
            HOGENOM:HOG000231828 HOVERGEN:HBG051404 OMA:DIWVVKD
            GeneTree:ENSGT00680000100059 OrthoDB:EOG43R3MJ EMBL:BX004991
            IPI:IPI00804253 RefSeq:NP_001120874.1 UniGene:Dr.80122
            Ensembl:ENSDART00000093415 GeneID:568524 KEGG:dre:568524
            NextBio:20889217 Uniprot:B0S522
        Length = 467

 Score = 145 (56.1 bits), Expect = 7.6e-13, Sum P(2) = 7.6e-13
 Identities = 41/163 (25%), Positives = 90/163 (55%)

Query:    91 DEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF 150
             D+ ++ +  L  PPN S +F+    K  +E+ +R+     G++ ++ ++KDK++ ESKG 
Sbjct:     2 DDSNRPSSYLDEPPN-SRLFLV-TSKSITEDTIRESFASFGEIQDIWVVKDKQTKESKGV 59

Query:   151 AFVSFRSKEFAKKAIDELHSKEL-KG-KTIRCSLSETKN-------------RLFIGNVP 195
             AF+ F     A  A++E+H + L +G K I+  ++++++             R+F+  +P
Sbjct:    60 AFIKFAKSSQACTAMEEMHGRCLAEGTKPIKVFIAQSRSSGSHRDVEDEELTRIFV-MIP 118

Query:   196 KNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYY 238
             K +TED+ ++  +  G  +E   +I++ +    ++G  +V ++
Sbjct:   119 KTFTEDDLKETFKVYGD-IEYAIIIRN-KTTGDSKGLGYVRFH 159

 Score = 128 (50.1 bits), Expect = 3.9e-05, P = 3.9e-05
 Identities = 49/236 (20%), Positives = 107/236 (45%)

Query:   182 LSETKN-RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNN 240
             L E  N RLF+    K+ TED  R+     G  ++ I ++KD Q    ++G +F+ +  +
Sbjct:    11 LDEPPNSRLFLVT-SKSITEDTIRESFASFGE-IQDIWVVKDKQT-KESKGVAFIKFAKS 67

Query:   241 ACADYSRQKMLNANFKLDGNTPT-ISWADPKSTPDH-SAAASQVKALYVKNIPDNTSTEK 298
             + A  + ++M +     +G  P  +  A  +S+  H      ++  ++V  IP   + + 
Sbjct:    68 SQACTAMEEM-HGRCLAEGTKPIKVFIAQSRSSGSHRDVEDEELTRIFVM-IPKTFTEDD 125

Query:   299 IKELFQRHGEVTKVVMPPGKS-G-KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356
             +KE F+ +G++   ++   K+ G  +  G++ + + S A KAV++ +K          ++
Sbjct:   126 LKETFKVYGDIEYAIIIRNKTTGDSKGLGYVRFHKPSQAAKAVENCDK------TFRAII 179

Query:   357 AKPQT-DKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGFQQPMI 411
             A+P+T +   +  +  +P          G   +A   +    + +  A  +   +I
Sbjct:   180 AEPRTKNSSADNDYFSNPRTTEHSTSELGSSSYA---FAQESSSYSAAESYSSDII 232

 Score = 100 (40.3 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
 Identities = 25/83 (30%), Positives = 46/83 (55%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +F+  +PK  +E+DL++  +  GD+    ++++K +G+SKG  +V F     A KA++
Sbjct:   111 TRIFVM-IPKTFTEDDLKETFKVYGDIEYAIIIRNKTTGDSKGLGYVRFHKPSQAAKAVE 169

Query:   167 ELHSKELKGKTIRCSLSE--TKN 187
                      KT R  ++E  TKN
Sbjct:   170 NCD------KTFRAIIAEPRTKN 186

 Score = 98 (39.6 bits), Expect = 7.6e-13, Sum P(2) = 7.6e-13
 Identities = 36/120 (30%), Positives = 58/120 (48%)

Query:   253 ANFKLDGNTPTISWADPKSTPDHSAAASQVKA-LYVKNIPDNTSTEKIKELFQRHGEVTK 311
             A  + D N P      PK      A  S VK  L+V   P     E ++++F R G + +
Sbjct:   360 ARLQTDANLPA-----PKKL---LALDSVVKERLFVIFNPSPLPVEVLEDVFCRFGSLIE 411

Query:   312 VVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK--KTEGTF 369
             V + PG    R+ G+I YA+R SA  A+       ++G  ++V+LA P  ++  K + T+
Sbjct:   412 VYLVPG----RNVGYIKYADRRSAHDAIDTMHGKVVNGVKMKVMLADPPKEESHKRQRTY 467


>UNIPROTKB|E1C240 [details] [associations]
            symbol:ELAVL2 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
            Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
            GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
            EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
            IPI:IPI00584568 ProteinModelPortal:E1C240
            Ensembl:ENSGALT00000025475 Uniprot:E1C240
        Length = 388

 Score = 170 (64.9 bits), Expect = 7.6e-13, Sum P(2) = 7.6e-13
 Identities = 48/183 (26%), Positives = 93/183 (50%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + + +  LP+  ++E+L+ L   IG++   +L++DK +G+S G+ FV++   + A+KAI+
Sbjct:    67 TNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAEKAIN 126

Query:   167 ELHSKELKGKTIRCSLSETKN------RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
              L+   L+ KTI+ S +   +       L++  +PK  T+ E  ++    G  + T  ++
Sbjct:   127 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRIL 185

Query:   221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP-TISWADPKSTPDHSAAA 279
              D Q    +RG  F+ +     A+ +  K LN         P T+ +A+  S   + A  
Sbjct:   186 VD-QVTGMSRGVGFIRFDKRIEAEEAI-KGLNGQKPPAATEPITVKFANNPSQKTNQAIL 243

Query:   280 SQV 282
             SQ+
Sbjct:   244 SQL 246

 Score = 143 (55.4 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 40/159 (25%), Positives = 86/159 (54%)

Query:   184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
             ++K  L +  +P++ T++E + +   +G  +E+ +L++D +   ++ G+ FV Y +   A
Sbjct:    64 DSKTNLIVNYLPQSMTQEELKSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYVDPKDA 121

Query:   244 DYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303
             + +    LN   +L   T  +S+A P      S+A+ +   LYV  +P   + +++++LF
Sbjct:   122 EKAINT-LNG-LRLQTKTIKVSYARP------SSASIRDANLYVSGLPKTMTQKELEQLF 173

Query:   304 QRHGEV-TKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
              ++G + T  ++    +G  R  GFI + +R  A +A+K
Sbjct:   174 SQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIK 212

 Score = 67 (28.6 bits), Expect = 7.6e-13, Sum P(2) = 7.6e-13
 Identities = 20/81 (24%), Positives = 36/81 (44%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK-RDFGFIHYAERSSALKAVKDT 342
             ++V N+  +     + ++F   G VT V V+    + K + FGF+       A  A+   
Sbjct:   307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366

Query:   343 EKYEIDGQVLEVVLAKPQTDK 363
               Y +  +VL+V     +T K
Sbjct:   367 NGYRLGDRVLQVSFKTNKTHK 387


>UNIPROTKB|E2RFV7 [details] [associations]
            symbol:HNRNPA3 "Uncharacterized protein" species:9615
            "Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
            EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
            Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
            Uniprot:E2RFV7
        Length = 378

 Score = 180 (68.4 bits), Expect = 7.7e-13, Sum P(2) = 7.7e-13
 Identities = 62/227 (27%), Positives = 105/227 (46%)

Query:   184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
             E   +LFIG +    T+D  R+  E  G   + + +++DPQ   R+RGF FV Y   +C 
Sbjct:    32 EQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCV-VMRDPQT-KRSRGFGFVTY---SCV 86

Query:   244 DYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303
             +     M     K+DG       A  +       A   VK ++V  I ++T    +++ F
Sbjct:    87 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYF 146

Query:   304 QRHGEVTKV-VMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYE-IDGQVLEVVLAKPQ 360
             +++G++  + VM   +SGK R F F+ + +  +  K V   +KY  I+G   EV  A  +
Sbjct:   147 EKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQKYHTINGHNCEVKKALSK 204

Query:   361 TDKKTEGTFPYSPGLVPTHLPHAG-YGGFAGTPYGSVGTGFGVAAGF 406
              + ++ G+     G     +   G +GG  G  +G  G  FG   G+
Sbjct:   205 QEMQSAGSQRGRGGGSGNFMGRGGNFGG--GGNFGR-GGNFGGRGGY 248

 Score = 142 (55.0 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
 Identities = 39/153 (25%), Positives = 80/153 (52%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P    ++FIGGL  + +++ LR+  E  G + +  +M+D ++  S+GF FV++   E   
Sbjct:    31 PEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVD 90

Query:   163 KAI----DELHSKELKGK-------TIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
              A+     ++  + ++ K       +++     T  ++F+G + ++  E   R   E  G
Sbjct:    91 AAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYG 150

Query:   212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244
               +ETIE+++D Q+  + RGF+FV + ++   D
Sbjct:   151 K-IETIEVMEDRQS-GKKRGFAFVTFDDHDTVD 181

 Score = 127 (49.8 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
 Identities = 26/89 (29%), Positives = 50/89 (56%)

Query:    83 KPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDK 142
             +P  +V  ++  K    L +     ++F+GG+ +D  E +LRD  E  G +  + +M+D+
Sbjct:   106 EPKRAVSREDSVKPGAHLTV----KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDR 161

Query:   143 ESGESKGFAFVSFRSKEFAKK-AIDELHS 170
             +SG+ +GFAFV+F   +   K  + + H+
Sbjct:   162 QSGKKRGFAFVTFDDHDTVDKIVVQKYHT 190

 Score = 57 (25.1 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query:   377 PTHLPHAGYGGFAGTPYGSVGTGFGVAAG 405
             P +    GYGG  G  YG+ G G+G   G
Sbjct:   280 PGYSSRGGYGG-GGPGYGNQGGGYGGGGG 307

 Score = 55 (24.4 bits), Expect = 7.7e-13, Sum P(2) = 7.7e-13
 Identities = 16/34 (47%), Positives = 16/34 (47%)

Query:   384 GYGGFAGTPYGSVGTGFGVAAGFQ-QPMIYGRGP 416
             GYGG  G   GS G G G   GF      YG GP
Sbjct:   247 GYGGGGGGSRGSYGGGDGGYNGFGGDGGNYGGGP 280


>UNIPROTKB|F1NLH0 [details] [associations]
            symbol:ELAVL4 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0017091 "AU-rich element binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
            InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
            TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
            EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
            Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
        Length = 371

 Score = 169 (64.5 bits), Expect = 8.0e-13, Sum P(2) = 8.0e-13
 Identities = 51/184 (27%), Positives = 95/184 (51%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + + +  LP++ ++E+ R L   IG++   +L++DK +G+S G+ FV++   + A+KAI+
Sbjct:    51 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 110

Query:   167 ELHSKELKGKTIRCSLSETKN------RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
              L+   L+ KTI+ S +   +       L++  +PK  T+ E  ++    G  + T  ++
Sbjct:   111 TLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGR-IITSRIL 169

Query:   221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT-P-TISWADPKSTPDHSAA 278
              D Q    +RG  F+ +     A+ +  K LN   K  G T P T+ +A+  S     A 
Sbjct:   170 VD-QVTGVSRGVGFIRFDKRIEAEEAI-KGLNGQ-KPSGATEPITVKFANNPSQKTSQAL 226

Query:   279 ASQV 282
              SQ+
Sbjct:   227 LSQL 230

 Score = 157 (60.3 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 43/159 (27%), Positives = 87/159 (54%)

Query:   184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
             ++K  L +  +P+N T++EFR +   +G  +E+ +L++D +   ++ G+ FV Y +   A
Sbjct:    48 DSKTNLIVNYLPQNMTQEEFRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYIDPKDA 105

Query:   244 DYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303
             + +    LN   +L   T  +S+A P      S+A+ +   LYV  +P   + +++++LF
Sbjct:   106 EKAINT-LNG-LRLQTKTIKVSYARP------SSASIRDANLYVSGLPKTMTQKELEQLF 157

Query:   304 QRHGEV-TKVVMPPGKSG-KRDFGFIHYAERSSALKAVK 340
              ++G + T  ++    +G  R  GFI + +R  A +A+K
Sbjct:   158 SQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 196

 Score = 67 (28.6 bits), Expect = 8.0e-13, Sum P(2) = 8.0e-13
 Identities = 25/109 (22%), Positives = 45/109 (41%)

Query:   257 LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMP 315
             +DG T  +      + P H+        ++V N+  ++    + +LF   G V  V V+ 
Sbjct:   269 IDGMTSLVGM----NIPGHTGTGW---CIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIR 321

Query:   316 PGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363
                + K + FGF+       A  A+     Y +  +VL+V     +T K
Sbjct:   322 DFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHK 370


>UNIPROTKB|Q3ZC44 [details] [associations]
            symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
            "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
            eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
            GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
            Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
            EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
            RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
            Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
            NextBio:20870841 Uniprot:Q3ZC44
        Length = 285

 Score = 189 (71.6 bits), Expect = 8.0e-13, P = 8.0e-13
 Identities = 49/172 (28%), Positives = 90/172 (52%)

Query:   105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
             +  ++F+GGL  D S++DL+D     G+V +  +  D  +G S+GF F+ F+     +K 
Sbjct:    68 DAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSVEKV 127

Query:   165 IDELHSKELKGKTI--RCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
             +D+   + L G+ I  + +++  K+   ++F+G +    TE++ R+   + G  +E IEL
Sbjct:   128 LDQKEHR-LDGRVIDPKKAMAMKKDPVKKIFVGGLNPEATEEKIREYFGEFGE-IEAIEL 185

Query:   220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK-LDGNTPTISWADPK 270
               DP++  R RGF F+ +          +K+L   F  + G+   I  A PK
Sbjct:   186 PMDPKSNKR-RGFVFITFKEEEPV----KKVLEKKFHTISGSKCEIKVAQPK 232

 Score = 160 (61.4 bits), Expect = 3.0e-09, P = 3.0e-09
 Identities = 63/234 (26%), Positives = 109/234 (46%)

Query:   174 KGKTIRCSLSETK-NRLFIGNVPKNWTEDEFRKVIEDVGPGVE-TIELIKDPQNPSRNRG 231
             +G  I  S +E    ++F+G +  + ++ + +      G  V+ TI++  DP N  R+RG
Sbjct:    56 EGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKM--DP-NTGRSRG 112

Query:   232 FSFVLYYNNACADYSRQKMLNAN-FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNI 290
             F F+L+ +      S +K+L+    +LDG        DPK     +     VK ++V  +
Sbjct:   113 FGFILFKDAT----SVEKVLDQKEHRLDGRV-----IDPKKAM--AMKKDPVKKIFVGGL 161

Query:   291 PDNTSTEKIKELFQRHGEVTKVVMP--PGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348
                 + EKI+E F   GE+  + +P  P  + +R F FI + E    +K V + + + I 
Sbjct:   162 NPEATEEKIREYFGEFGEIEAIELPMDPKSNKRRGFVFITFKEEEP-VKKVLEKKFHTIS 220

Query:   349 GQVLEVVLAKPQTDKKTEGTFPY-SPGLVPTHLPHAGYGGFAGTPYGSVGTGFG 401
             G   E+ +A+P   K+      Y S G    +  + G GG  G+  G   T +G
Sbjct:   221 GSKCEIKVAQP---KEVYQQQQYGSGGRGNRNRGNRGSGGGGGSG-GQGSTNYG 270


>WB|WBGene00003902 [details] [associations]
            symbol:pab-1 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0040010 "positive regulation of growth
            rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
            [GO:0009792 "embryo development ending in birth or egg hatching"
            evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
            evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            [GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
            "receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
            evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
            "P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
            body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
            InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
            PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
            GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
            GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
            GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
            Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
            EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
            GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
            NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
            ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
            MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
            EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
            EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
            EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
            WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
            ArrayExpress:Q9U302 Uniprot:Q9U302
        Length = 646

 Score = 199 (75.1 bits), Expect = 8.5e-13, P = 8.5e-13
 Identities = 72/269 (26%), Positives = 126/269 (46%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +++G L  D +E  L +     G V  +R+ +D  +  S G+A+V+F+    A++A+D
Sbjct:    32 ASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMD 91

Query:   167 ELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
              ++ + L GK +R   S+      R   GN+  KN  +    K I D       I   K 
Sbjct:    92 TMNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKV 151

Query:   223 P-QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA--A 279
                    ++G+ FV +     A  + QK+ N    L G    +    P++  +      A
Sbjct:   152 AIDEDGFSKGYGFVHFETEEAAQNAIQKV-NGML-LAGKKVFVGKFQPRAQRNRELGETA 209

Query:   280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGFIHYAERSSALK 337
              Q   +YVKN  D+ + E +++LF + G +T  +V+   GKS  + FGF+ +A    A  
Sbjct:   210 KQFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKS--KGFGFVAFANPEEAET 267

Query:   338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
             AV+      I+G  L++ + + Q  KK+E
Sbjct:   268 AVQALHDSTIEGTDLKLHVCRAQ--KKSE 294

 Score = 122 (48.0 bits), Expect = 0.00029, P = 0.00029
 Identities = 52/250 (20%), Positives = 104/250 (41%)

Query:   182 LSETKNR---LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYY 238
             L ET  +   +++ N   ++ ++   K+    G  + + E++       +++GF FV + 
Sbjct:   205 LGETAKQFTNVYVKNFGDHYNKETLEKLFAKFG-NITSCEVMTVE---GKSKGFGFVAFA 260

Query:   239 NNACADYSRQKMLNANFKLDGNTPTISWADPKST---------PDHSAAASQVKA---LY 286
             N   A+ + Q + ++  +       +  A  KS            H A   Q      LY
Sbjct:   261 NPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLY 320

Query:   287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKY 345
             VKN+ +    + +K+ F+ +G +T   +   ++G+ + FGF+ + +   A  AV +    
Sbjct:   321 VKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSK 380

Query:   346 EIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAG 405
              +  + L V +A+ + D++ +    Y   L    + H    G A       G G+ VA  
Sbjct:   381 MVCSKPLYVAIAQRKEDRRAQLASQYMQRLASMRM-HGNVPGAAMYNPTQPGPGYYVANP 439

Query:   406 FQQPMIYGRG 415
              QQ   +  G
Sbjct:   440 MQQQRNFAGG 449

 Score = 119 (46.9 bits), Expect = 0.00061, P = 0.00061
 Identities = 33/113 (29%), Positives = 57/113 (50%)

Query:    77 HVEEEEKPTASVGEDEKDKHAQLLA---LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDV 133
             HV   +K +    E +K KH Q  A       G  +++  L +   ++ L+   E  G++
Sbjct:   285 HVCRAQKKSERHAELKK-KHEQHKAERMQKYQGVNLYVKNLDETVDDDGLKKQFESYGNI 343

Query:   134 FEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186
                ++M D E+G SKGF FV F   E A  A+ E++SK +  K +  ++++ K
Sbjct:   344 TSAKVMTD-ENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRK 395


>WB|WBGene00003903 [details] [associations]
            symbol:pab-2 species:6239 "Caenorhabditis elegans"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
            binding" evidence=IEA] [GO:0009792 "embryo development ending in
            birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
            evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
            InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
            PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
            GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
            GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
            TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
            GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
            RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
            STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
            EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
            EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
            UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
            OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
        Length = 692

 Score = 199 (75.1 bits), Expect = 9.5e-13, P = 9.5e-13
 Identities = 70/279 (25%), Positives = 129/279 (46%)

Query:   100 LALPPNGS----EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSF 155
             +  PPN +     ++IG L  D SE  L +     G V  +R+ +D  S  S G+A+V+F
Sbjct:    46 IGYPPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNF 105

Query:   156 RSKEFAKKAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVG 211
             +    A++A+D ++ + + G+ +R   S+      R   GN+  KN       K + D  
Sbjct:   106 QQPADAERALDTMNFEVIHGRPMRIMWSQRDPAARRAGNGNIFIKNLDRVIDNKSVYDTF 165

Query:   212 PGVETIELIKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK 270
                  I   K   +   N +G+ FV +     A  + +K+ N     D     +    P+
Sbjct:   166 SLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKV-NGMLLSDKKV-YVGKFQPR 223

Query:   271 STPDHSAAASQVKA--LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFI 327
             +        S +K   ++VKN  ++   EK+  +F + GE+T  V+     GK + FGF+
Sbjct:   224 AQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFV 283

Query:   328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
              +A++ +A +AV+      ++G   ++ + + Q  KK+E
Sbjct:   284 AFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQ--KKSE 320

 Score = 122 (48.0 bits), Expect = 0.00031, P = 0.00031
 Identities = 25/81 (30%), Positives = 46/81 (56%)

Query:   106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
             G  +++  + +D +++ LRD     G +   ++M D E+G SKGF FV F   E A  A+
Sbjct:   342 GVNLYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVD-ENGRSKGFGFVCFEKPEEATAAV 400

Query:   166 DELHSKELKGKTIRCSLSETK 186
              +++SK +  K +  +L++ K
Sbjct:   401 TDMNSKMIGAKPLYVALAQRK 421


>UNIPROTKB|E2RGA8 [details] [associations]
            symbol:CELF3 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00560000076837 OMA:HSAYLNP EMBL:AAEX03011056
            Ensembl:ENSCAFT00000020318 Uniprot:E2RGA8
        Length = 539

 Score = 166 (63.5 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
 Identities = 47/165 (28%), Positives = 93/165 (56%)

Query:   114 LPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KE 172
             +P+   E+DL+ + E  G +FE+ ++KDK +G  KG AF+++ +++ A KA   LH  K 
Sbjct:    91 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKAQSALHEQKT 150

Query:   173 LKG--KTIRCSLSETKNR-----LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
             L G  + I+   +++++R     LF+G + K  T+++ RK+ E  G  ++   +++ P  
Sbjct:   151 LPGMNRPIQVKPADSESRGEDRKLFVGMLGKQQTDEDVRKMFEPFGT-IDECTVLRGPDG 209

Query:   226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT--ISWAD 268
              S+  G +FV +  +A A  +    L+++  L G + +  + +AD
Sbjct:   210 TSK--GCAFVKFQTHAEAQ-AAINTLHSSRTLPGASSSLVVKFAD 251

 Score = 119 (46.9 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
 Identities = 27/69 (39%), Positives = 44/69 (63%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++F+G L K  ++ED+R + EP G + E  +++  + G SKG AFV F++   A+ AI+ 
Sbjct:   173 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPD-GTSKGCAFVKFQTHAEAQAAINT 231

Query:   168 LHS-KELKG 175
             LHS + L G
Sbjct:   232 LHSSRTLPG 240

 Score = 119 (46.9 bits), Expect = 0.00048, P = 0.00048
 Identities = 25/106 (23%), Positives = 54/106 (50%)

Query:    82 EKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD 141
             ++P     + ++ +  Q     P+G  +FI  LP++ ++ ++  +  P G V   ++  D
Sbjct:   429 QQPPPPPQQQQQQQQQQQQREGPDGCNIFIYHLPQEFTDSEILQMFVPFGHVISAKVFVD 488

Query:   142 KESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
             + + +SK F FVSF +   A+ AI  ++  ++  K ++  L   K+
Sbjct:   489 RATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKD 534

 Score = 75 (31.5 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
 Identities = 18/78 (23%), Positives = 41/78 (52%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
             +++ ++P   +  +I ++F   G V   KV +    +  + FGF+ +   +SA  A++  
Sbjct:   456 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAM 515

Query:   343 EKYEIDGQVLEVVLAKPQ 360
               ++I  + L+V L +P+
Sbjct:   516 NGFQIGMKRLKVQLKRPK 533

 Score = 52 (23.4 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
 Identities = 16/62 (25%), Positives = 29/62 (46%)

Query:   189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
             +FI ++P+ +T+ E  ++    G  +     +    N S+   F FV + N A A  + Q
Sbjct:   456 IFIYHLPQEFTDSEILQMFVPFGHVISAKVFVDRATNQSKC--FGFVSFDNPASAQAAIQ 513

Query:   249 KM 250
              M
Sbjct:   514 AM 515


>UNIPROTKB|F1NEX8 [details] [associations]
            symbol:RBM45 "Uncharacterized protein" species:9031 "Gallus
            gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
            "RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003723 OMA:DIWVVKD GeneTree:ENSGT00680000100059
            EMBL:AADN02020000 IPI:IPI00596036 ProteinModelPortal:F1NEX8
            Ensembl:ENSGALT00000014983 Uniprot:F1NEX8
        Length = 502

 Score = 172 (65.6 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 47/156 (30%), Positives = 84/156 (53%)

Query:    97 AQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFR 156
             A+ L  PPN S VF+  L KDA E  +R+   P GD+  + L++DK + ES+G AF+ F 
Sbjct:    45 AECLDEPPN-SRVFVV-LGKDAGEALIRERFAPFGDIQNIWLLRDKRTNESRGIAFIKFA 102

Query:   157 SKEFAKKAIDELHSKEL--KGKTIRCSLSETK-------------NRLFIGNVPKNWTED 201
                 A +A++E+H + L    K I+  +++++              R+F+  +PK +TE+
Sbjct:   103 RSSQACRAMEEMHGRSLVPDTKPIKVFIAQSRASGSHRDVEDEELTRIFV-MIPKTYTEE 161

Query:   202 EFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
             + R+  +  G  +E   +IK+ +    ++G  +V Y
Sbjct:   162 DLREKFKMYGD-IEYCSIIKN-KTTGESKGLGYVRY 195

 Score = 111 (44.1 bits), Expect = 9.5e-06, Sum P(2) = 9.5e-06
 Identities = 27/82 (32%), Positives = 47/82 (57%)

Query:   107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
             + +F+  +PK  +EEDLR+  +  GD+    ++K+K +GESKG  +V +     A +AI+
Sbjct:   148 TRIFVM-IPKTYTEEDLREKFKMYGDIEYCSIIKNKTTGESKGLGYVRYLKPSQAARAIE 206

Query:   167 ELHSKELKGKTIRCSLSETKNR 188
             E        ++ R  L+E KN+
Sbjct:   207 ECD------RSYRAILAEPKNK 222

 Score = 67 (28.6 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 21/82 (25%), Positives = 41/82 (50%)

Query:   285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK 344
             L+V   P       ++++F R G + KV +  GK+      +  +A+R+SA +A+     
Sbjct:   420 LFVLFHPHPLPVTILEDVFCRFGNLIKVYLVAGKN----VAYAKFADRASASEAITALHG 475

Query:   345 YEIDGQVLEVVLAKPQTDKKTE 366
               ++G  L+V LA   T++  +
Sbjct:   476 KIVNGVRLKVRLADSPTEESNK 497


>UNIPROTKB|E1B8K2 [details] [associations]
            symbol:CELF6 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
            EMBL:DAAA02027998 IPI:IPI00694457 ProteinModelPortal:E1B8K2
            Ensembl:ENSBTAT00000018735 Uniprot:E1B8K2
        Length = 482

 Score = 166 (63.5 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 42/151 (27%), Positives = 84/151 (55%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++F+G +P+   E+DL+ L E  G ++E+ ++KD+ +G  KG AF+++ +++ A KA   
Sbjct:    47 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSA 106

Query:   168 LHS-KELKGKT----IRCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
             LH  K L G      ++ + SE +    +LF+G + K   E++ R++ +  G  +E   +
Sbjct:   107 LHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGH-IEECTV 165

Query:   220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKM 250
             ++ P   S+  G +FV + +   A  + Q +
Sbjct:   166 LRSPDGTSK--GCAFVKFGSQGEAQAAIQSL 194

 Score = 119 (46.9 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
 Identities = 28/69 (40%), Positives = 42/69 (60%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++F+G L K   EED+R L +P G + E  +++  + G SKG AFV F S+  A+ AI  
Sbjct:   135 KLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPD-GTSKGCAFVKFGSQGEAQAAIQS 193

Query:   168 LH-SKELKG 175
             LH S+ + G
Sbjct:   194 LHGSRTMAG 202

 Score = 73 (30.8 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 20/94 (21%), Positives = 43/94 (45%)

Query:   269 PKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGF 326
             P + P       +   L++ ++P      ++ + F   G V   KV +    +  + FGF
Sbjct:   383 PSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGF 442

Query:   327 IHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360
             + +   +SA  A++    ++I  + L+V L +P+
Sbjct:   443 VSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPK 476

 Score = 40 (19.1 bits), Expect = 0.00063, Sum P(2) = 0.00063
 Identities = 16/62 (25%), Positives = 26/62 (41%)

Query:   189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
             LFI ++P+ + + E  +     G  V     +    N S+   F FV + N   A  + Q
Sbjct:   399 LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKC--FGFVSFDNPTSAQTAIQ 456

Query:   249 KM 250
              M
Sbjct:   457 AM 458


>UNIPROTKB|F1SHM1 [details] [associations]
            symbol:CELF6 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
            InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
            EMBL:CU012037 Ensembl:ENSSSCT00000002157 Uniprot:F1SHM1
        Length = 482

 Score = 166 (63.5 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 42/151 (27%), Positives = 84/151 (55%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++F+G +P+   E+DL+ L E  G ++E+ ++KD+ +G  KG AF+++ +++ A KA   
Sbjct:    47 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSA 106

Query:   168 LHS-KELKGKT----IRCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
             LH  K L G      ++ + SE +    +LF+G + K   E++ R++ +  G  +E   +
Sbjct:   107 LHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGH-IEECTV 165

Query:   220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKM 250
             ++ P   S+  G +FV + +   A  + Q +
Sbjct:   166 LRSPDGTSK--GCAFVKFGSQGEAQAAIQSL 194

 Score = 119 (46.9 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
 Identities = 28/69 (40%), Positives = 42/69 (60%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++F+G L K   EED+R L +P G + E  +++  + G SKG AFV F S+  A+ AI  
Sbjct:   135 KLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPD-GTSKGCAFVKFGSQGEAQAAIQS 193

Query:   168 LH-SKELKG 175
             LH S+ + G
Sbjct:   194 LHGSRTMAG 202

 Score = 73 (30.8 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 20/94 (21%), Positives = 43/94 (45%)

Query:   269 PKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGF 326
             P + P       +   L++ ++P      ++ + F   G V   KV +    +  + FGF
Sbjct:   383 PSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGF 442

Query:   327 IHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360
             + +   +SA  A++    ++I  + L+V L +P+
Sbjct:   443 VSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPK 476

 Score = 40 (19.1 bits), Expect = 0.00063, Sum P(2) = 0.00063
 Identities = 16/62 (25%), Positives = 26/62 (41%)

Query:   189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
             LFI ++P+ + + E  +     G  V     +    N S+   F FV + N   A  + Q
Sbjct:   399 LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKC--FGFVSFDNPTSAQTAIQ 456

Query:   249 KM 250
              M
Sbjct:   457 AM 458


>RGD|2321074 [details] [associations]
            symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
            norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
            PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
            ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
        Length = 320

 Score = 183 (69.5 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
 Identities = 61/226 (26%), Positives = 103/226 (45%)

Query:   184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243
             E   +LFIG +    T+D  R+  E  G   + + +++DPQ   R+RGF FV Y   +C 
Sbjct:    32 EQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCV-VMRDPQT-KRSRGFGFVTY---SCV 86

Query:   244 DYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELF 303
             +     M     K+DG       A  +       A   VK ++V  I ++T    +++ F
Sbjct:    87 EEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYF 146

Query:   304 QRHGEVTKV-VMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYE-IDGQVLEVVLAKPQ 360
             +++G++  + VM   +SGK R F F+ + +  +  K V   +KY  I+G   EV  A  +
Sbjct:   147 EKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV--VQKYHTINGHNCEVKKALSK 204

Query:   361 TDKKTEGTFPYSPGLVPTHLPHAGYGGFAGTPYGSVGTGFGVAAGF 406
              + ++ G+     G     +   G  G  G  +G  G  FG   G+
Sbjct:   205 QEMQSAGSQRGRGGGSGNFMGRGGNFGGGGGNFGR-GGNFGGRGGY 249

 Score = 142 (55.0 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
 Identities = 39/153 (25%), Positives = 80/153 (52%)

Query:   103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
             P    ++FIGGL  + +++ LR+  E  G + +  +M+D ++  S+GF FV++   E   
Sbjct:    31 PEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVD 90

Query:   163 KAI----DELHSKELKGK-------TIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG 211
              A+     ++  + ++ K       +++     T  ++F+G + ++  E   R   E  G
Sbjct:    91 AAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYG 150

Query:   212 PGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244
               +ETIE+++D Q+  + RGF+FV + ++   D
Sbjct:   151 K-IETIEVMEDRQS-GKKRGFAFVTFDDHDTVD 181

 Score = 127 (49.8 bits), Expect = 7.7e-06, Sum P(2) = 7.7e-06
 Identities = 26/89 (29%), Positives = 50/89 (56%)

Query:    83 KPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDK 142
             +P  +V  ++  K    L +     ++F+GG+ +D  E +LRD  E  G +  + +M+D+
Sbjct:   106 EPKRAVSREDSVKPGAHLTV----KKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDR 161

Query:   143 ESGESKGFAFVSFRSKEFAKK-AIDELHS 170
             +SG+ +GFAFV+F   +   K  + + H+
Sbjct:   162 QSGKKRGFAFVTFDDHDTVDKIVVQKYHT 190

 Score = 44 (20.5 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
 Identities = 15/37 (40%), Positives = 17/37 (45%)

Query:   386 GGFAGTPYGSVGT--GFGVAAGFQQPMIYGRGPMPSG 420
             G + G  YG  G    FG  +G QQ   YG  PM  G
Sbjct:   258 GSYGGGNYGGGGNYNDFGNYSG-QQQSNYG--PMKGG 291


>MGI|MGI:1923433 [details] [associations]
            symbol:Celf6 "CUGBP, Elav-like family member 6"
            species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
            evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
            via spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
            evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
            "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            MGI:MGI:1923433 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
            GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
            HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754
            GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
            CTD:60677 EMBL:AK034216 EMBL:BC052406 EMBL:BC057083 IPI:IPI00222250
            IPI:IPI00853853 RefSeq:NP_780444.2 UniGene:Mm.265415
            ProteinModelPortal:Q7TN33 SMR:Q7TN33 PhosphoSite:Q7TN33
            PRIDE:Q7TN33 Ensembl:ENSMUST00000034840 Ensembl:ENSMUST00000121266
            GeneID:76183 KEGG:mmu:76183 UCSC:uc009pxx.1 UCSC:uc009pxy.1
            NextBio:344727 Bgee:Q7TN33 CleanEx:MM_BRUNOL6 Genevestigator:Q7TN33
            Uniprot:Q7TN33
        Length = 460

 Score = 165 (63.1 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
 Identities = 40/138 (28%), Positives = 79/138 (57%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++F+G +P+   E+DL+ L E  G ++E+ ++KD+ +G  KG AF+++ +++ A KA   
Sbjct:    47 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSA 106

Query:   168 LHS-KELKGKT----IRCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
             LH  K L G      ++ + SE +    +LF+G + K   E++ R++ +  G  +E   +
Sbjct:   107 LHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGH-IEECTV 165

Query:   220 IKDPQNPSRNRGFSFVLY 237
             ++ P   S+  G +FV +
Sbjct:   166 LRSPDGTSK--GCAFVKF 181

 Score = 117 (46.2 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
 Identities = 28/69 (40%), Positives = 42/69 (60%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++F+G L K   EED+R L +P G + E  +++  + G SKG AFV F S+  A+ AI  
Sbjct:   135 KLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPD-GTSKGCAFVKFGSQGEAQAAIQG 193

Query:   168 LH-SKELKG 175
             LH S+ + G
Sbjct:   194 LHGSRTMTG 202

 Score = 73 (30.8 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
 Identities = 20/94 (21%), Positives = 43/94 (45%)

Query:   269 PKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGF 326
             P + P       +   L++ ++P      ++ + F   G V   KV +    +  + FGF
Sbjct:   361 PSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGF 420

Query:   327 IHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360
             + +   +SA  A++    ++I  + L+V L +P+
Sbjct:   421 VSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPK 454

 Score = 40 (19.1 bits), Expect = 0.00091, Sum P(2) = 0.00091
 Identities = 16/62 (25%), Positives = 26/62 (41%)

Query:   189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
             LFI ++P+ + + E  +     G  V     +    N S+   F FV + N   A  + Q
Sbjct:   377 LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKC--FGFVSFDNPTSAQTAIQ 434

Query:   249 KM 250
              M
Sbjct:   435 AM 436


>RGD|1310451 [details] [associations]
            symbol:Celf6 "CUGBP, Elav-like family member 6" species:10116
            "Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IEA;ISO] [GO:0003674 "molecular_function"
            evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
            [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] InterPro:IPR000504
            InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
            RGD:1310451 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
            GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
            OMA:MQHVAAF IPI:IPI00369994 Ensembl:ENSRNOT00000014450
            UCSC:RGD:1310451 Uniprot:D4ABS9
        Length = 460

 Score = 165 (63.1 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
 Identities = 40/138 (28%), Positives = 79/138 (57%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++F+G +P+   E+DL+ L E  G ++E+ ++KD+ +G  KG AF+++ +++ A KA   
Sbjct:    47 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKAQSA 106

Query:   168 LHS-KELKGKT----IRCSLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
             LH  K L G      ++ + SE +    +LF+G + K   E++ R++ +  G  +E   +
Sbjct:   107 LHEQKTLPGMNRPIQVKPAASEGRGEDRKLFVGMLGKQQGEEDVRRLFQPFGH-IEECTV 165

Query:   220 IKDPQNPSRNRGFSFVLY 237
             ++ P   S+  G +FV +
Sbjct:   166 LRSPDGTSK--GCAFVKF 181

 Score = 117 (46.2 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
 Identities = 28/69 (40%), Positives = 42/69 (60%)

Query:   108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
             ++F+G L K   EED+R L +P G + E  +++  + G SKG AFV F S+  A+ AI  
Sbjct:   135 KLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPD-GTSKGCAFVKFGSQGEAQAAIQG 193

Query:   168 LH-SKELKG 175
             LH S+ + G
Sbjct:   194 LHGSRTMTG 202

 Score = 73 (30.8 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
 Identities = 20/94 (21%), Positives = 43/94 (45%)

Query:   269 PKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGKRDFGF 326
             P + P       +   L++ ++P      ++ + F   G V   KV +    +  + FGF
Sbjct:   361 PSALPQQQREGPEGCNLFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKCFGF 420

Query:   327 IHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360
             + +   +SA  A++    ++I  + L+V L +P+
Sbjct:   421 VSFDNPTSAQTAIQAMNGFQIGMKRLKVQLKRPK 454

 Score = 40 (19.1 bits), Expect = 0.00091, Sum P(2) = 0.00091
 Identities = 16/62 (25%), Positives = 26/62 (41%)

Query:   189 LFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248
             LFI ++P+ + + E  +     G  V     +    N S+   F FV + N   A  + Q
Sbjct:   377 LFIYHLPQEFGDAELIQTFLPFGAVVSAKVFVDRATNQSKC--FGFVSFDNPTSAQTAIQ 434

Query:   249 KM 250
              M
Sbjct:   435 AM 436

WARNING:  HSPs involving 1178 database sequences were not reported due to the
          limiting value of parameter B = 250.


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.133   0.386    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      437       395   0.00096  117 3  11 23  0.48    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1428
  No. of states in DFA:  606 (64 KB)
  Total size of DFA:  246 KB (2133 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  43.72u 0.11s 43.83t   Elapsed:  00:00:02
  Total cpu time:  43.79u 0.12s 43.91t   Elapsed:  00:00:02
  Start:  Tue May 21 03:57:10 2013   End:  Tue May 21 03:57:12 2013
WARNINGS ISSUED:  2
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with LIF2 LIF2 LIF2 AT4G00830	protein from Arabidopsis thaliana	3.4e-154
BLAST match view associations BLAST with AT3G52660 AT3G52660 AT3G52660	protein from Arabidopsis thaliana	5.7e-107
BLAST match view associations BLAST with HNRNPR HNRNPR HNRNPR HNRNPR protein	protein from Bos taurus	6.0e-46
BLAST match view associations BLAST with A1CF A1CF A1CF Uncharacterized protein	protein from Bos taurus	3.2e-43
BLAST match view associations BLAST with HNRNPR HNRNPR HNRNPR Uncharacterized protein	protein from Canis lupus familiaris	3.5e-43
BLAST match view associations BLAST with HNRNPR HNRNPR HNRNPR Heterogeneous nuclear ribonucleoprotein R	protein from Homo sapiens	3.5e-43
BLAST match view associations BLAST with HNRNPR HNRNPR HNRNPR Uncharacterized protein	protein from Sus scrofa	3.5e-43
BLAST match view associations BLAST with Hnrnpr Hnrnpr Hnrnpr heterogeneous nuclear ribonucleoprotein R	gene from Rattus norvegicus	3.5e-43
BLAST match view associations BLAST with Syp Syp Syp Syncrip	protein from Drosophila melanogaster	4.5e-43
BLAST match view associations BLAST with syncripl syncripl syncripl synaptotagmin binding, cytoplasmic RNA interacting protein, like	gene_product from Danio rerio	4.5e-43
BLAST match view associations BLAST with A1CF A1CF A1CF APOBEC1 complementation factor	protein from Homo sapiens	5.2e-43
BLAST match view associations BLAST with A1CF A1CF A1CF APOBEC1 complementation factor	protein from Homo sapiens	5.2e-43
BLAST match view associations BLAST with A1CF A1CF A1CF APOBEC1 complementation factor	protein from Pongo abelii	5.2e-43
BLAST match view associations BLAST with HNRNPR HNRNPR HNRNPR Uncharacterized protein	protein from Gallus gallus	5.9e-43
BLAST match view associations BLAST with A1CF A1CF A1CF Uncharacterized protein	protein from Sus scrofa	1.1e-42
BLAST match view associations BLAST with A1cf A1cf A1cf APOBEC1 complementation factor	gene from Rattus norvegicus	1.1e-42
BLAST match view associations BLAST with SYNCRIP SYNCRIP SYNCRIP Uncharacterized protein	protein from Bos taurus	1.2e-42
BLAST match view associations BLAST with SYNCRIP SYNCRIP SYNCRIP Uncharacterized protein	protein from Canis lupus familiaris	1.2e-42
BLAST match view associations BLAST with SYNCRIP SYNCRIP SYNCRIP Heterogeneous nuclear ribonucleoprotein Q	protein from Homo sapiens	1.2e-42
BLAST match view associations BLAST with SYNCRIP SYNCRIP SYNCRIP Uncharacterized protein	protein from Sus scrofa	1.2e-42
BLAST match view associations BLAST with SYNCRIP SYNCRIP SYNCRIP Uncharacterized protein	protein from Gallus gallus	1.5e-42
BLAST match view associations BLAST with Syncrip Syncrip Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein	protein from Mus musculus	1.5e-42
BLAST match view associations BLAST with Syncrip Syncrip Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein	gene from Rattus norvegicus	1.5e-42
BLAST match view associations BLAST with Syncrip Syncrip Syncrip Heterogeneous nuclear ribonucleoprotein Q	protein from Rattus norvegicus	1.5e-42
BLAST match view associations BLAST with A1cf A1cf A1cf APOBEC1 complementation factor	protein from Mus musculus	2.2e-42
BLAST match view associations BLAST with HNRNPR HNRNPR HNRNPR Heterogeneous nuclear ribonucleoprotein R	protein from Homo sapiens	8.4e-42
BLAST match view associations BLAST with hrp-2 hrp-2 hrp-2	gene from Caenorhabditis elegans	1.2e-41
BLAST match view associations BLAST with syncrip syncrip syncrip synaptotagmin binding, cytoplasmic RNA interacting protein	gene_product from Danio rerio	6.5e-41
BLAST match view associations BLAST with rnpA rnpA rnpA putative RNA binding protein	gene from Dictyostelium discoideum	8.1e-41
BLAST match view associations BLAST with A1CF A1CF A1CF Uncharacterized protein	protein from Canis lupus familiaris	2.9e-39
BLAST match view associations BLAST with si:ch211-241e15.2 si:ch211-241e15.2 si:ch211-241e15.2	gene_product from Danio rerio	6.4e-39
BLAST match view associations BLAST with A1CF A1CF A1CF Uncharacterized protein	protein from Gallus gallus	1.3e-38
BLAST match view associations BLAST with a1cf a1cf a1cf apobec1 complementation factor	gene_product from Danio rerio	3.4e-38
BLAST match view associations BLAST with RBM46 RBM46 RBM46 Uncharacterized protein	protein from Bos taurus	1.9e-37
BLAST match view associations BLAST with RBM46 RBM46 RBM46 Uncharacterized protein	protein from Canis lupus familiaris	2.4e-37
BLAST match view associations BLAST with RBM46 RBM46 RBM46 Uncharacterized protein	protein from Canis lupus familiaris	2.4e-37
BLAST match view associations BLAST with MGC27016 MGC27016 MGC27016 Putative uncharacterized protein MGC27016	protein from Homo sapiens	2.4e-37
BLAST match view associations BLAST with RBM46 RBM46 RBM46 Probable RNA-binding protein 46	protein from Homo sapiens	2.4e-37
BLAST match view associations BLAST with RBM46 RBM46 RBM46 Probable RNA-binding protein 46	protein from Homo sapiens	2.4e-37
BLAST match view associations BLAST with RBM46 RBM46 RBM46 Uncharacterized protein	protein from Sus scrofa	2.4e-37
BLAST match view associations BLAST with Rbm46 Rbm46 Rbm46 RNA binding motif protein 46	protein from Mus musculus	2.4e-37
BLAST match view associations BLAST with Rbm46 Rbm46 Rbm46 RNA binding motif protein 46	gene from Rattus norvegicus	2.4e-37
BLAST match view associations BLAST with RBM47 RBM47 RBM47 Uncharacterized protein	protein from Gallus gallus	2.9e-37
BLAST match view associations BLAST with SYNCRIP SYNCRIP SYNCRIP Uncharacterized protein	protein from Canis lupus familiaris	7.2e-37
BLAST match view associations BLAST with rbm46 rbm46 rbm46 RNA binding motif protein 46	gene_product from Danio rerio	1.0e-36
BLAST match view associations BLAST with RBM47 RBM47 RBM47 RNA-binding protein 47	protein from Canis lupus familiaris	1.7e-36
BLAST match view associations BLAST with RBM47 RBM47 RBM47 RNA-binding protein 47	protein from Canis lupus familiaris	1.7e-36
BLAST match view associations BLAST with RBM46 RBM46 RBM46 Uncharacterized protein	protein from Gallus gallus	3.5e-36
BLAST match view associations BLAST with RBM47 RBM47 RBM47 Uncharacterized protein	protein from Bos taurus	4.9e-36
BLAST match view associations BLAST with RBM47 RBM47 RBM47 Uncharacterized protein	protein from Sus scrofa	4.9e-36
BLAST match view associations BLAST with AT5G28390 AT5G28390 AT5G28390	protein from Arabidopsis thaliana	5.7e-36
BLAST match view associations BLAST with RBM47 RBM47 RBM47 cDNA FLJ51456, moderately similar to APOBEC1 complementation factor	protein from Homo sapiens	7.2e-36
BLAST match view associations BLAST with RBM47 RBM47 RBM47 RNA-binding protein 47	protein from Homo sapiens	7.2e-36
BLAST match view associations BLAST with Rbm47 Rbm47 Rbm47 RNA binding motif protein 47	protein from Mus musculus	1.1e-35
BLAST match view associations BLAST with Rbm47 Rbm47 Rbm47 RNA binding motif protein 47	gene from Rattus norvegicus	1.4e-35
BLAST match view associations BLAST with RBM47 RBM47 RBM47 RNA-binding protein 47	protein from Homo sapiens	1.5e-35
BLAST match view associations BLAST with AT2G44710 AT2G44710 AT2G44710	protein from Arabidopsis thaliana	2.2e-33
BLAST match view associations BLAST with RBM46 RBM46 RBM46 Uncharacterized protein	protein from Gallus gallus	6.9e-31
BLAST match view associations BLAST with HNRNPR HNRNPR HNRNPR Heterogeneous nuclear ribonucleoprotein R	protein from Homo sapiens	2.4e-28
BLAST match view associations BLAST with A1CF A1CF A1CF APOBEC1 complementation factor	protein from Homo sapiens	1.8e-23
BLAST match view associations BLAST with RBM47 RBM47 RBM47 RNA-binding protein 47	protein from Homo sapiens	8.9e-21
BLAST match view associations BLAST with DDB_G0291486 DDB_G0291486 DDB_G0291486 putative splicing regulator	gene from Dictyostelium discoideum	2.8e-20
BLAST match view associations BLAST with orf19.3037 orf19.3037 orf19.3037	gene_product from Candida albicans	3.1e-20
BLAST match view associations BLAST with pabpc4 pabpc4 pabpc4 poly(A) binding protein, cytoplasmic 4 (inducible form)	gene_product from Danio rerio	5.6e-20
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Poly(A) binding protein, cytoplasmic 4 (Inducible form), isoform CRA_e	protein from Homo sapiens	1.1e-19
BLAST match view associations BLAST with PABPC4L PABPC4L PABPC4L Polyadenylate-binding protein 4-like	protein from Homo sapiens	1.1e-19
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Sus scrofa	1.3e-19
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Canis lupus familiaris	1.3e-19
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 PABPC4 protein	protein from Bos taurus	1.8e-19
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Uncharacterized protein	protein from Gallus gallus	2.2e-19
BLAST match view associations BLAST with PABPC4L PABPC4L PABPC4L Polyadenylate-binding protein 4-like	protein from Homo sapiens	2.2e-19
BLAST match view associations BLAST with PABPC4 PABPC4 PABPC4 Polyadenylate-binding protein 4	protein from Homo sapiens	2.3e-19
BLAST match view associations BLAST with LOC100737174 LOC100737174 LOC100737174 Uncharacterized protein	protein from Sus scrofa	2.7e-19
BLAST match view associations BLAST with PAB1 PAB1 PAB1 Poly(A) binding protein	gene from Saccharomyces cerevisiae	3.1e-19
BLAST match view associations BLAST with LOC100737210 LOC100737210 LOC100737210 Uncharacterized protein	protein from Sus scrofa	3.7e-19
BLAST match view associations BLAST with AT4G36960 AT4G36960 AT4G36960	protein from Arabidopsis thaliana	1.3e-18
BLAST match view associations BLAST with NCL NCL NCL Nucleolin	protein from Gallus gallus	1.3e-18
BLAST match view associations BLAST with NCL NCL NCL Nucleolin	protein from Gallus gallus	1.3e-18
BLAST match view associations BLAST with E9PTI5 E9PTI5 E9PTI5 Uncharacterized protein	protein from Rattus norvegicus	1.4e-18
BLAST match view associations BLAST with NCL NCL NCL Uncharacterized protein	protein from Canis lupus familiaris	2.5e-18
BLAST match view associations BLAST with NCL NCL NCL Nucleolin	protein from Macaca fascicularis	2.5e-18
BLAST match view associations BLAST with Pabpc6 Pabpc6 Pabpc6 poly(A) binding protein, cytoplasmic 6	gene from Rattus norvegicus	2.5e-18
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Uncharacterized protein	protein from Sus scrofa	2.8e-18
BLAST match view associations BLAST with NCL NCL NCL Uncharacterized protein	protein from Bos taurus	3.3e-18
BLAST match view associations BLAST with Pabpc4l Pabpc4l Pabpc4l poly(A) binding protein, cytoplasmic 4-like	gene from Rattus norvegicus	3.4e-18
BLAST match view associations BLAST with Ncl Ncl Ncl nucleolin	gene from Rattus norvegicus	3.6e-18
BLAST match view associations BLAST with Ncl Ncl Ncl Nucleolin	protein from Rattus norvegicus	3.6e-18
BLAST match view associations BLAST with PABPC1 PABPC1 PABPC1 Polyadenylate-binding protein 1	protein from Pongo abelii	4.5e-18
BLAST match view associations BLAST with Pabpc1 Pabpc1 Pabpc1 poly(A) binding protein, cytoplasmic 1	protein from Mus musculus	6.0e-18
BLAST match view associations BLAST with Pabpc1 Pabpc1 Pabpc1 poly(A) binding protein, cytoplasmic 1	gene from Rattus norvegicus	6.0e-18
BLAST match view associations BLAST with NCL NCL NCL Nucleolin	protein from Homo sapiens	6.6e-18
BLAST match view associations BLAST with NCL NCL NCL Nucleolin	protein from Gallus gallus	7.4e-18
BLAST match view associations BLAST with PAB2 PAB2 PAB2 AT4G34110	protein from Arabidopsis thaliana	9.9e-18
BLAST match view associations BLAST with NCL NCL NCL Nucleolin	protein from Pongo abelii	1.1e-17
BLAST match view associations BLAST with PABPC3 PABPC3 PABPC3 Polyadenylate-binding protein 3	protein from Homo sapiens	1.1e-17