BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013716
(437 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens
GN=SYNCRIP PE=1 SV=2
Length = 623
Score = 174 bits (440), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKAFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus
GN=Syncrip PE=1 SV=2
Length = 623
Score = 173 bits (439), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 158 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 217
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 218 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 277
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 278 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 336
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 337 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 390
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 391 MNGKDLEGENIEIVFAKPPDQKRKE 415
>sp|Q7TP47|HNRPQ_RAT Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus
GN=Syncrip PE=2 SV=1
Length = 533
Score = 173 bits (438), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 163/265 (61%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+E+F+G +P+D E++L L E G ++++RLM D +G ++G+AFV+F +KE A+
Sbjct: 68 PSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQ 127
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ ++ E++ GK I +S NRLF+G++PK+ T+++ + V G+ + L
Sbjct: 128 EAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYH 187
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 188 QPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMA-K 246
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + + E +++ F + G++ +V +D+ FIH+ ER A+KA+++
Sbjct: 247 VKVLFVRNLANTVTEEILEKSFSQFGKLERV------KKLKDYAFIHFDERDGAVKAMEE 300
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
+++G+ +E+V AKP K+ E
Sbjct: 301 MNGKDLEGENIEIVFAKPPDQKRKE 325
>sp|O43390|HNRPR_HUMAN Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens GN=HNRNPR
PE=1 SV=1
Length = 633
Score = 162 bits (410), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 91/265 (34%), Positives = 160/265 (60%), Gaps = 8/265 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G+EVF+G +P+D E++L L E G ++++RLM D SG+++G+AF++F KE A+
Sbjct: 161 PGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQ 220
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
+A+ S E++ GK + +S NRLF+G++PKN T++ + V G+ + L
Sbjct: 221 EAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTEGLVDVILYH 280
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
P + +NRGF F+ Y ++ A +R+++++ K+ GN T+ WADP PD A +
Sbjct: 281 QPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMA-K 339
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
VK L+V+N+ + E +++ F G++ +V +D+ F+H+ +R +A+KA+ +
Sbjct: 340 VKVLFVRNLATTVTEEILEKSFSEFGKLERV------KKLKDYAFVHFEDRGAAVKAMDE 393
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+G+ +E+VLAKP K+ E
Sbjct: 394 MNGKEIEGEEIEIVLAKPPDKKRKE 418
>sp|Q9NQ94|A1CF_HUMAN APOBEC1 complementation factor OS=Homo sapiens GN=A1CF PE=1 SV=1
Length = 594
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/262 (35%), Positives = 153/262 (58%), Gaps = 11/262 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKVE 108
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHGIAVDWAEPEVEVDEDTMS 228
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++
Sbjct: 229 S-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVE 281
Query: 338 AVKDTEKYEIDGQVLEVVLAKP 359
A+K +DG +EV LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>sp|Q5R9H4|A1CF_PONAB APOBEC1 complementation factor OS=Pongo abelii GN=A1CF PE=2 SV=1
Length = 587
Score = 159 bits (403), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/262 (35%), Positives = 153/262 (58%), Gaps = 11/262 (4%)
Query: 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEF 160
A P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K
Sbjct: 50 APPERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMD-FNGNNRGYAFVTFSNKLE 108
Query: 161 AKKAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIEL 219
AK AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 109 AKNAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIV 168
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
+ ++NRGF+FV Y ++ A +R+K+L +L G+ + WA+P+ D +
Sbjct: 169 YPSAADKTKNRGFAFVEYESHRAAAMARRKLLPGRIQLWGHPIAVDWAEPEVEVDEDTMS 228
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337
S VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++
Sbjct: 229 S-VKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV------KKIRDYAFVHFSNREDAVE 281
Query: 338 AVKDTEKYEIDGQVLEVVLAKP 359
A+K +DG +EV LAKP
Sbjct: 282 AMKALNGKVLDGSPIEVTLAKP 303
>sp|Q5YD48|A1CF_MOUSE APOBEC1 complementation factor OS=Mus musculus GN=A1cf PE=2 SV=2
Length = 595
Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 153/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+RLM D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRLMMDF-NGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRTGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>sp|Q923K9|A1CF_RAT APOBEC1 complementation factor OS=Rattus norvegicus GN=A1cf PE=1
SV=1
Length = 594
Score = 152 bits (385), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/260 (35%), Positives = 153/260 (58%), Gaps = 11/260 (4%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P G E+FIG LP+D E++L LCE IG ++E+R+M D +G ++G+AFV+F +K+ AK
Sbjct: 52 PERGCEIFIGKLPRDLFEDELIPLCEKIGKIYEMRMMMDF-NGNNRGYAFVTFSNKQEAK 110
Query: 163 KAIDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIK 221
AI +L++ E++ G+ + S RLF+G +PK +E ++ V GV + +
Sbjct: 111 NAIKQLNNYEIRNGRLLGVCASVDNCRLFVGGIPKTKKREEILSEMKKVTEGVVDVIVYP 170
Query: 222 DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ ++NRGF+FV Y ++ A +R+++L +L G+ + WA+P+ D +S
Sbjct: 171 SAADKTKNRGFAFVEYESHRAAAMARRRLLPGRIQLWGHPIAVDWAEPEVEVDEDTMSS- 229
Query: 282 VKALYVKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339
VK LYV+N+ +TS E I++ F + G V +V RD+ F+H++ R A++A+
Sbjct: 230 VKILYVRNLMLSTSEEMIEKEFNSIKPGAVERV------KKIRDYAFVHFSNREDAVEAM 283
Query: 340 KDTEKYEIDGQVLEVVLAKP 359
K +DG +EV LAKP
Sbjct: 284 KALNGKVLDGSPIEVTLAKP 303
>sp|Q91WT8|RBM47_MOUSE RNA-binding protein 47 OS=Mus musculus GN=Rbm47 PE=2 SV=1
Length = 590
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 145/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQT-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ E IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEETIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>sp|Q66H68|RBM47_RAT RNA-binding protein 47 OS=Rattus norvegicus GN=Rbm47 PE=2 SV=1
Length = 590
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 144/257 (56%), Gaps = 11/257 (4%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A+
Sbjct: 70 GCEVFVGKIPRDVYEDELVPVFETVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRAV 128
Query: 166 DELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQ 224
EL++ E++ G+ + S RLFIG +PK E + I V GV + +
Sbjct: 129 RELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKRGEILEEIAKVTEGVLNVIVYASAA 188
Query: 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA 284
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 189 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMQT-VKI 247
Query: 285 LYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342
LYV+N+ T+ E IK F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 248 LYVRNLMIETTEETIKRSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNNL 301
Query: 343 EKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 302 NGTELEGSCLEVTLAKP 318
>sp|Q9XSR3|RBM47_CANFA RNA-binding protein 47 OS=Canis familiaris GN=RBM47 PE=2 SV=1
Length = 592
Score = 150 bits (379), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 147/258 (56%), Gaps = 11/258 (4%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV++ K AK+A
Sbjct: 71 RGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVTYCHKGEAKRA 129
Query: 165 IDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 130 VRELNNHEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 189
Query: 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVK 283
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 190 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VK 248
Query: 284 ALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+A R A+ A+
Sbjct: 249 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFASREDAVLAMNS 302
Query: 342 TEKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 303 LNGTELEGSCLEVTLAKP 320
>sp|Q5R5P4|RBM47_PONAB RNA-binding protein 47 OS=Pongo abelii GN=RBM47 PE=2 SV=2
Length = 593
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 146/258 (56%), Gaps = 11/258 (4%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A
Sbjct: 69 RGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRA 127
Query: 165 IDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 128 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 187
Query: 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVK 283
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 188 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VK 246
Query: 284 ALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 342 TEKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>sp|A0AV96|RBM47_HUMAN RNA-binding protein 47 OS=Homo sapiens GN=RBM47 PE=1 SV=2
Length = 593
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 146/258 (56%), Gaps = 11/258 (4%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G EVF+G +P+D E++L + E +G ++E+RLM D + G+++G+AFV + K AK+A
Sbjct: 69 RGCEVFVGKIPRDVYEDELVPVFEAVGRIYELRLMMDFD-GKNRGYAFVMYCHKHEAKRA 127
Query: 165 IDELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223
+ EL++ E++ G+ + S RLFIG +PK +E + I V GV + +
Sbjct: 128 VRELNNYEIRPGRLLGVCCSVDNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASA 187
Query: 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVK 283
+ +NRGF+FV Y ++ A +R+K++ +L G+ + WA+P+ D + VK
Sbjct: 188 ADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET-VK 246
Query: 284 ALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341
LYV+N+ T+ + IK+ F + G V +V RD+ F+H+ R A+ A+ +
Sbjct: 247 ILYVRNLMIETTEDTIKKSFGQFNPGCVERV------KKIRDYAFVHFTSREDAVHAMNN 300
Query: 342 TEKYEIDGQVLEVVLAKP 359
E++G LEV LAKP
Sbjct: 301 LNGTELEGSCLEVTLAKP 318
>sp|P86049|RBM46_MOUSE Probable RNA-binding protein 46 OS=Mus musculus GN=Rbm46 PE=4 SV=1
Length = 533
Score = 149 bits (376), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFSKFKPGAVERV------KKLRDYAFVHFFHREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKENT 314
>sp|Q8TBY0|RBM46_HUMAN Probable RNA-binding protein 46 OS=Homo sapiens GN=RBM46 PE=2 SV=1
Length = 533
Score = 149 bits (376), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKENT 314
>sp|Q4R2Z0|RBM46_MACFA Probable RNA-binding protein 46 OS=Macaca fascicularis GN=RBM46
PE=2 SV=2
Length = 485
Score = 149 bits (376), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 93/262 (35%), Positives = 148/262 (56%), Gaps = 11/262 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + +KE A+ AI
Sbjct: 61 CEVFVGKIPRDMYEDELVPVFERAGKIYEFRLMMEF-SGENRGYAFVMYTTKEEAQLAIR 119
Query: 167 ELHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E++ GK I +S RLFIG +PK ++E ++ V GV + + +
Sbjct: 120 ILNNYEIRPGKFIGVCVSLDNCRLFIGAIPKEKKKEEILDEMKKVTEGVVDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV Y ++ A +R+K++ F+L G+T + WADP+ D +VK L
Sbjct: 180 KTKNRGFAFVEYESHRAAAMARRKLIPGTFQLWGHTIQVDWADPEKEVDEE-TMQRVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F + G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMISTTEETIKAEFNKFKPGAVERV------KKLRDYAFVHFFNREDAVAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKPQTDKKT 365
IDG +EV LAKP + T
Sbjct: 293 GKCIDGASIEVTLAKPVNKENT 314
>sp|Q0P4R6|RBM46_XENTR Probable RNA-binding protein 46 OS=Xenopus tropicalis GN=rbm46 PE=2
SV=1
Length = 534
Score = 149 bits (375), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 147/256 (57%), Gaps = 11/256 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
EVF+G +P+D E+ L L G ++E RLM + SGE++G+AFV + +KE A AI
Sbjct: 61 CEVFVGKIPRDMYEDKLVPLFARAGKIYEFRLMME-FSGENRGYAFVMYTNKEEALLAIR 119
Query: 167 ELHSKEL-KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQN 225
L++ E+ +GK I +S RLFIG++P+ ++E + ++ V GV + + +
Sbjct: 120 MLNNYEICQGKFIGVCVSLDNCRLFIGSIPQEKRKEEILEEMKKVTEGVMDVIVYPSATD 179
Query: 226 PSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKAL 285
++NRGF+FV+Y ++ A +R+K++ F+L G+T ++WA P+ D +VK L
Sbjct: 180 KTKNRGFAFVMYESHRAAAMARRKLIPGPFQLWGHTIKVAWASPEKEVDEE-TMQKVKVL 238
Query: 286 YVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343
YV+N+ +T+ E IK F R+ G V +V RD+ F+H+ R A+ A+
Sbjct: 239 YVRNLMMSTTEETIKAEFNRYKPGVVERV------KKIRDYAFVHFFRRDYAIAAMSVMN 292
Query: 344 KYEIDGQVLEVVLAKP 359
IDG +EV LAKP
Sbjct: 293 GRLIDGARIEVTLAKP 308
>sp|Q08BH5|RBM46_DANRE Probable RNA-binding protein 46 OS=Danio rerio GN=rbm46 PE=2 SV=1
Length = 510
Score = 145 bits (367), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 149/257 (57%), Gaps = 11/257 (4%)
Query: 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167
EVF+G +P+D E++L + E G ++E RLM + SGE++G+AFV + ++E A++AI
Sbjct: 46 EVFVGKIPRDMYEDELVPVFEQAGHIYEFRLMMEF-SGENRGYAFVMYTTREKAQRAIQL 104
Query: 168 LHSKELK-GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
L + E++ GK I +S RLFIG++PK+ ++E ++ + V GV + + +
Sbjct: 105 LDNYEIRPGKFIGVCVSLDNCRLFIGSIPKDKKKEEIQEEMMKVTEGVMDVIVYPSAVDR 164
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALY 286
+NRGF+FV Y ++ A +R+K++ F+L G+T + WA+P+ D +V+ LY
Sbjct: 165 MKNRGFAFVEYESHKAAAMARRKLIPGTFQLWGHTIQVDWAEPEKELDEE-TMQRVRVLY 223
Query: 287 VKNIPDNTSTEKIKELFQ--RHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK 344
V+N+ +T+ E ++ F + G V +V D+ FIH+ R AL A++
Sbjct: 224 VRNLMLSTTEETLRSEFSQLKPGSVERV------KKLTDYAFIHFYNREDALTALESMNG 277
Query: 345 YEIDGQVLEVVLAKPQT 361
IDG +EV LAKP +
Sbjct: 278 KVIDGSPIEVTLAKPAS 294
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 103 bits (256), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 87/305 (28%), Positives = 144/305 (47%), Gaps = 34/305 (11%)
Query: 78 VEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVR 137
+EE+ PT + E K + +G+ +++G L SE L D+ PIG V +R
Sbjct: 17 IEEQTAPTTTESETPK--------VETSGASLYVGELEPTVSEALLYDIFSPIGSVSSIR 68
Query: 138 LMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET--------KNRL 189
+ +D + S G+A+V+F E KAI++L+ +KGK R S+ +
Sbjct: 69 VCRDAITNTSLGYAYVNFHDHEAGPKAIEQLNYTLIKGKPCRIMWSQRDPSLRKKGSGNI 128
Query: 190 FIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQK 249
+I N+ + G + + ++ D S RGF FV + N + A
Sbjct: 129 YIKNLHPAIDNKSLHETFSTFG-NILSCKVATDENGVS--RGFGFVHFENESDAR----- 180
Query: 250 MLNANFKLDG---NTPTISWADPKSTPDHSAAASQVKA----LYVKNIPDNTSTEKIKEL 302
+A +DG N + A S D + +VKA +YVKNI TS E+ +EL
Sbjct: 181 --DAIEAVDGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEEL 238
Query: 303 FQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361
F ++G++T V+ GK R FGF+++ + ++A KAV + + E GQ L V A+ +
Sbjct: 239 FGKYGKITSAVLEKDSEGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKY 298
Query: 362 DKKTE 366
++ E
Sbjct: 299 ERLQE 303
Score = 66.2 bits (160), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 121/277 (43%), Gaps = 33/277 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
++I L + L + G++ ++ D E+G S+GF FV F ++ A+ AI+ +
Sbjct: 128 IYIKNLHPAIDNKSLHETFSTFGNILSCKVATD-ENGVSRGFGFVHFENESDARDAIEAV 186
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ + + +L +K +++ N+ + +++EF ++ G +
Sbjct: 187 DGMLMNDQEVYVALHVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGK-I 245
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+ L KD + + RGF FV + ++A A + ++ FK G + A K
Sbjct: 246 TSAVLEKDSE--GKLRGFGFVNFEDHAAAAKAVDELNELEFK--GQKLYVGRAQKKYERL 301
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
+ A Q L+VKN+ D+ EK+KE F G +T VM
Sbjct: 302 QELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRDETGNS 361
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358
R FGF+ ++ A KA+ + + + G+ L V +A+
Sbjct: 362 RGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQ 398
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G +F+ L +E L++ P G + ++M+D E+G S+GF FV F + E A KA
Sbjct: 320 QGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRD-ETGNSRGFGFVCFSTPEEATKA 378
Query: 165 IDELHSKELKGKTIRCSLSETK 186
I E + + + GK + ++++ K
Sbjct: 379 ITEKNQQIVAGKPLYVAIAQRK 400
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 11/268 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G V +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G++FV + AD + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VM--PPGKSGKRDFGFIHYAERSSALKA 338
+Y+KN + E +KELF + G+ V VM P GKS + FGF+ Y + A KA
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKS--KGFGFVSYEKHEDANKA 247
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
V++ EI G+++ V A+ + +++ E
Sbjct: 248 VEEMNGKEISGKIIFVGRAQKKVERQAE 275
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L D G++ +++ D E+G SKG+AFV F ++E A KAI+++
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ G +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
++++++DP +++GF FV Y + A+ + ++M N ++ G + A K
Sbjct: 219 -SVKVMRDPNG--KSKGFGFVSYEKHEDANKAVEEM-NGK-EISGKIIFVGRAQKKVERQ 273
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q LY+KN+ D EK+++ F G +T KV++ G+S
Sbjct: 274 AELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + ++K T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQY 382
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I ++ +E L++L G V++M+D +G+SKG
Sbjct: 174 KSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRD-PNGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVS+ E A KA++E++ KE+ GK I ++ K
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L+I N+ +++ RK G +++D R++GF FV +
Sbjct: 293 GVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLED----GRSKGFGFVCF 340
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 89.0 bits (219), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 79/272 (29%), Positives = 130/272 (47%), Gaps = 14/272 (5%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N + +++G L +E L +L IG V +R+ +D + S G+A+V++ S E +KA
Sbjct: 46 NSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKA 105
Query: 165 IDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIELI 220
++EL+ +KGK R S+ + GNV KN K + D I
Sbjct: 106 LEELNYTVIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSC 165
Query: 221 KDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
K Q+ N +G+ FV +Y A A + K +N L+ + PK + +
Sbjct: 166 KVAQDELGNSKGYGFV-HYETAEAANNAIKHVNGML-LNEKKVFVGHHIPKK--ERMSKF 221
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
++KA +YVKNI + + E +ELF++HG++T + GK R FGF++Y +
Sbjct: 222 EEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARDDQGKSRGFGFVNYIRHEA 281
Query: 335 ALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A AV E GQ L V A+ + +++ E
Sbjct: 282 AAVAVDHLNDIEFKGQKLYVGRAQKKHEREEE 313
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 62/118 (52%), Gaps = 13/118 (11%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+K++ ++ + N + +++ + D ++ED R+L E GD+ + +D + G+S+GF
Sbjct: 214 KKERMSKFEEMKANFTNIYVKNIDLDVTDEDFRELFEKHGDITSASIARD-DQGKSRGFG 272
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIE 208
FV++ E A A+D L+ E KG+ +L++G K E+E RK E
Sbjct: 273 FVNYIRHEAAAVAVDHLNDIEFKGQ-----------KLYVGRAQKKHEREEELRKQYE 319
Score = 38.5 bits (88), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 145 GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
G+SKGF FV F + + A KA+ E++ K ++GK + +L++ K+
Sbjct: 422 GKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKD 464
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 88.6 bits (218), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 138/273 (50%), Gaps = 21/273 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E+ L +G V +R+ +D+ + S G+A+V+F A+KA+D
Sbjct: 10 ASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALD 69
Query: 167 ELHSKELKGKTIRCSLSETKNRL--------FIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
++ +KGK+IR S+ L FI N+ K+ + G + + +
Sbjct: 70 TMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGK-ILSSK 128
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA- 277
++ D Q +G++FV + N + AD + ++M N KL + K+ D A
Sbjct: 129 VMSDDQGS---KGYAFVHFQNQSAADRAIEEM---NGKLLKGCK-VFVGRFKNRKDREAE 181
Query: 278 ---AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
AS+ +Y+KN + E++K++F ++G+ V + SGK + FGF+ +
Sbjct: 182 LRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHE 241
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A KAV++ +I+GQ++ V A+ + +++ E
Sbjct: 242 AAKKAVEEMNGRDINGQLIFVGRAQKKVERQAE 274
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 68/298 (22%), Positives = 124/298 (41%), Gaps = 54/298 (18%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L K + L + G + ++M D + SKG+AFV F+++ A +AI+E+
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEM 157
Query: 169 HSKELKGKTI---------------RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPG 213
+ K LKG + R SE N ++I N + ++ + V G
Sbjct: 158 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTN-VYIKNFGGDMDDERLKDVFSKYGKT 216
Query: 214 VETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--- 270
+ +++++ D S+ GF FV + ++ A + ++M + ++G + A K
Sbjct: 217 L-SVKVMTDSSGKSK--GFGFVSFDSHEAAKKAVEEMNGRD--INGQLIFVGRAQKKVER 271
Query: 271 ---------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
Q LY+KN+ D EK++ F G +++V + +
Sbjct: 272 QAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 331
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTH 379
+ FG I ++ A KA+ E++G++L G+ P S L H
Sbjct: 332 KGFGLICFSSPEDATKAMT-----EMNGRIL--------------GSKPLSIALAQRH 370
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
++ KD+ A+L + + V+I D +E L+D+ G V++M D SG+SKG
Sbjct: 173 KNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKG 231
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF S E AKKA++E++ +++ G+ I ++ K
Sbjct: 232 FGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQ 291
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
+L+I N+ +++ R G +I +K Q +++GF + +
Sbjct: 292 GVKLYIKNLDDTIDDEKLRNEFSSFG----SISRVKVMQEEGQSKGFGLICF 339
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 88.6 bits (218), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 76/269 (28%), Positives = 130/269 (48%), Gaps = 18/269 (6%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L SE L D+ PIG V +R+ +D + S G+A+V+F E +KAI+
Sbjct: 38 ASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIE 97
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIED---VGPGVETIEL 219
+L+ +KG+ R S+ L GN+ KN D K + D V + + ++
Sbjct: 98 QLNYTPIKGRLCRIMWSQRDPSLRKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKI 157
Query: 220 IKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAA 279
D S +GF FV + A ++ ++A + N I A S + +
Sbjct: 158 ATDENGKS--KGFGFVHFEEEGAA----KEAIDALNGMLLNGQEIYVAPHLSRKERDSQL 211
Query: 280 SQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSS 334
+ KA LYVKNI T+ E+ +ELF + G + + GK + FGF++Y +
Sbjct: 212 EETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHED 271
Query: 335 ALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363
A+KAV+ E++G+ L V A+ + ++
Sbjct: 272 AVKAVEALNDSELNGEKLYVGRAQKKNER 300
Score = 85.9 bits (211), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 137/285 (48%), Gaps = 33/285 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L D GD+ ++ D E+G+SKGF FV F + AK+AID L
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ I + L ETK L++ N+ T+++F+++ GP V
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIV 246
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L KD + +GF FV Y + A + + + ++ +L+G + A K+
Sbjct: 247 -SASLEKDAD--GKLKGFGFVNYEKHEDAVKAVEALNDS--ELNGEKLYVGRAQKKNERM 301
Query: 275 H------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
H A Q L+VKN+ D+ EK++E F +G +T + ++GK
Sbjct: 302 HVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKS 361
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ ++ A KA+ + + + G+ L V +A+ + ++++
Sbjct: 362 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 406
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L +E L + P G + ++M+ E+G+SKGF FV F + E A KAI
Sbjct: 321 GVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAI 379
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E + + + GK + ++++ K+
Sbjct: 380 TEKNQQIVAGKPLYVAIAQRKD 401
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 129/275 (46%), Gaps = 20/275 (7%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N + +++G L + +E L D+ P+G + +R+ +D + S G+A+V++ E KKA
Sbjct: 48 NNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKA 107
Query: 165 IDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216
I EL+ E+ G+ R SE +FI N+ + G +
Sbjct: 108 IQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSC 167
Query: 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS 276
+ + N +RGF FV + + A + + + ++G ++ PK D
Sbjct: 168 KVALDENGN---SRGFGFVHFKEESDAKDAIEAV--NGMLMNGLEVYVAMHVPKK--DRI 220
Query: 277 AAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAE 331
+ + KA +YVKNI T+ E+ ++LF ++GE+ + GK + FGF+++ +
Sbjct: 221 SKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVD 280
Query: 332 RSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
++A KAV++ E Q L V A+ + ++ E
Sbjct: 281 HNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEE 315
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 126/285 (44%), Gaps = 33/285 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L + G+V ++ D E+G S+GF FV F+ + AK AI+ +
Sbjct: 140 IFIKNLHPAIDNKALHETFSTFGEVLSCKVALD-ENGNSRGFGFVHFKEESDAKDAIEAV 198
Query: 169 HSKELKGKTIRCS-----------LSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ + G + + L E K +++ N+ T++EF ++ G V
Sbjct: 199 NGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIV 258
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+ L KD + + +GF FV + ++ A + +++ FK + A K
Sbjct: 259 -SAALEKDAE--GKPKGFGFVNFVDHNAAAKAVEELNGKEFK--SQALYVGRAQKKYERA 313
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
A Q L++KN+ D+ EK+KE F +G +T VM +
Sbjct: 314 EELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNS 373
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ ++ A KA+ + + + G+ L V +A+ + ++++
Sbjct: 374 KGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRKDVRRSQ 418
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L +E L++ P G + R+M+D+E G SKGF FV F S E A KA+
Sbjct: 333 GVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQE-GNSKGFGFVCFSSPEEATKAM 391
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E + + + GK + ++++ K+
Sbjct: 392 TEKNQQIVAGKPLYVAIAQRKD 413
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 131/273 (47%), Gaps = 14/273 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 45 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 104
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KGK R S+ + GNV KN K + D I
Sbjct: 105 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILS 164
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + S D +
Sbjct: 165 CKVAQDEFGNSKGYGFV-HYETAEAANNAIKHVNGMLL---NDKKVFVGHHISKKDRQSK 220
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
++KA +Y+KN+ S E+ +++F++ GE+T + + GK R FGF++Y+
Sbjct: 221 FEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHD 280
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV + E+ GQ L V A+ + +++ E
Sbjct: 281 SAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEE 313
Score = 66.6 bits (161), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 100/228 (43%), Gaps = 32/228 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E G SKG+ FV + + E A AI +
Sbjct: 138 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHV 196
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + E K ++I N+ + +E+EFR++ E G +
Sbjct: 197 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGE-I 255
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+ L +D + ++RGF FV Y + A + +M + K G + A K
Sbjct: 256 TSATLSRDQE--GKSRGFGFVNYSTHDSAQAAVDEMNDKEVK--GQKLYVGRAQKKHERE 311
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
+ A+ Q LYVKN+ D+ EK++E+F +G +T
Sbjct: 312 EELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLREMFAPYGTIT 359
Score = 40.0 bits (92), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 145 GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
G+SKGF FV F S + A KA+ E++ + + GK + +L++ K+
Sbjct: 420 GKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRKD 462
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 133/274 (48%), Gaps = 14/274 (5%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
P + + +++G L +E L +L IG V +R+ +D + S G+A+V++ S +
Sbjct: 61 PQSSASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDTITRRSLGYAYVNYNSTSDGE 120
Query: 163 KAIDELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIE 218
KA++EL+ +KG+ R S+ L GNV KN K + D I
Sbjct: 121 KALEELNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNIL 180
Query: 219 LIKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA 277
K Q+ + N +G+ FV Y + A + K +N N L+ + + PK D +
Sbjct: 181 SCKVAQDENGNSKGYGFVHYETDEAAAQAI-KHVN-NMLLNEKKVYVGYHIPKK--DRQS 236
Query: 278 AASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAER 332
++KA +YVKNI + E+ ++LF ++G+VT + GK R FGF+++
Sbjct: 237 KFEEMKANFTNIYVKNISLEATDEEFRDLFAKYGDVTSSSLARDSEGKSRGFGFVNFTTH 296
Query: 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A KAV++ E GQ L V A+ + +++ E
Sbjct: 297 ECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEE 330
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/330 (22%), Positives = 133/330 (40%), Gaps = 78/330 (23%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E+G SKG+ FV + + E A +AI +
Sbjct: 155 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAAAQAIKHV 213
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
++ L K + + E K +++ N+ T++EFR + G V
Sbjct: 214 NNMLLNEKKVYVGYHIPKKDRQSKFEEMKANFTNIYVKNISLEATDEEFRDLFAKYG-DV 272
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L +D + ++RGF FV + + CA + +++ F+ G + A K +
Sbjct: 273 TSSSLARDSE--GKSRGFGFVNFTTHECAAKAVEELNGKEFR--GQDLYVGRAQKKHERE 328
Query: 275 HSA-----AASQVKA-------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPG---- 317
AA KA LY+KN+ D+ +K++++F +G +T VM
Sbjct: 329 EELRKSYEAARLEKANKYQGVNLYIKNLADDIDDDKLRQMFSEYGPITSAKVMRDAVTEG 388
Query: 318 -----------------------------------KSGKR------DFGFIHYAERSSAL 336
K G R FGF+ ++ A
Sbjct: 389 SAEEETEGKDKENKKEGEQAAEAEGEAEGAEKKTEKKGDRRLGKSKGFGFVCFSNPDDAT 448
Query: 337 KAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
KAV + + I+G+ L V LA+ + +K +
Sbjct: 449 KAVAEMNQRMIEGKPLYVALAQRKDVRKNQ 478
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 132/273 (48%), Gaps = 14/273 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 46 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 105
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KGK R S+ + GNV KN K + D I
Sbjct: 106 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILS 165
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + S D +
Sbjct: 166 CKVAQDEFGNSKGYGFV-HYETAEAANNAIKHVNGMLL---NDKKVFVGHHISKKDRQSK 221
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
++KA +Y+KNI + + E+ +ELF++ GE+T + + GK R FGF++++
Sbjct: 222 FEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHE 281
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV + + EI Q L V A+ + +++ E
Sbjct: 282 SAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEE 314
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 67/118 (56%), Gaps = 13/118 (11%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V+I + +D +EE+ R+L E G++ L +D+E G+S+GF
Sbjct: 215 KKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQE-GKSRGFG 273
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIE 208
FV+F + E A+ A+DE++ KE++ +L++G K E+E RK E
Sbjct: 274 FVNFSTHESAQAAVDEMNEKEIR-----------TQKLYVGRAQKKHEREEELRKQYE 320
Score = 39.3 bits (90), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 145 GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187
G+SKGF FV F S + A KA+ E++ + + GK + +L++ K+
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKD 472
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 85.5 bits (210), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 76/298 (25%), Positives = 142/298 (47%), Gaps = 14/298 (4%)
Query: 79 EEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRL 138
E + ++SV D ++ + + N + +++G L +E L ++ PIG V +R+
Sbjct: 39 ESSDATSSSVPADSAEEQGESSGIAENSASLYVGELNPSVNEATLFEIFSPIGQVASIRV 98
Query: 139 MKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE---TKNRLFIGNV- 194
+D S +S G+A+V++ E +KAI+EL+ ++G+ R S+ + R GN+
Sbjct: 99 CRDAVSKKSLGYAYVNYHKLEDGEKAIEELNYTPVEGRPCRIMWSQRDPSARRSGDGNIF 158
Query: 195 PKNWTEDEFRKVIEDVGPGVETIELIK-DPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253
KN K + D I +K + +++ F FV Y A Q + +
Sbjct: 159 IKNLHPAIDNKALHDTFSAFGKILSVKVATDDLGQSKCFGFVHYETEEAA----QAAIES 214
Query: 254 NFKLDGNTPTISWADPKSTPDHSAAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEV 309
+ N + S D + ++KA +YVKNI + ++ +ELF G++
Sbjct: 215 VNGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGKI 274
Query: 310 TKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
T + + GK + FGF+++ E +A KAV++ EI+GQ + V A+ + ++ E
Sbjct: 275 TSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEE 332
Score = 68.6 bits (166), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 65/285 (22%), Positives = 132/285 (46%), Gaps = 33/285 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + V++ D + G+SK F FV + ++E A+ AI+ +
Sbjct: 157 IFIKNLHPAIDNKALHDTFSAFGKILSVKVATD-DLGQSKCFGFVHYETEEAAQAAIESV 215
Query: 169 HS-----------KELKGKTIRCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ K + K L E K +++ N+ +TE EF ++ G +
Sbjct: 216 NGMLLNDREVYVGKHVSKKDRESKLEEMKANYTNIYVKNIDLAYTEKEFEELFAPFGK-I 274
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+I L KD + +++GF FV + + A + +++ + +++G + A K
Sbjct: 275 TSIYLEKDAE--GKSKGFGFVNFEEHEAAAKAVEELNDK--EINGQKIYVGRAQKKRERT 330
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+ + Q L+VKN+ + +EK++E F+ G +T + +GK
Sbjct: 331 EELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVDDAGKS 390
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ ++ A KA+ + + ++G+ L V LA+ + ++++
Sbjct: 391 KGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQ 435
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L + E L + +P G + ++M D ++G+SKGF FV F + E A KAI
Sbjct: 350 GVNLFVKNLDEQIDSEKLEEEFKPFGTITSSKVMVD-DAGKSKGFGFVCFSTPEEATKAI 408
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++ + + GK + +L++ K+
Sbjct: 409 TEMNQRMVNGKPLYVALAQRKD 430
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 131/273 (47%), Gaps = 14/273 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 49 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 108
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KGK R S+ + GNV KN K + D I
Sbjct: 109 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILS 168
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + S D +
Sbjct: 169 CKVAQDEFGNSKGYGFV-HYETAEAANNAIKHVNGMLL---NDKKVFVGHHISKKDRQSK 224
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
++KA +Y+KNI + E+ +++F++ GE+T + + GK R FGF++++
Sbjct: 225 FEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHD 284
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV + EI GQ L V A+ + +++ E
Sbjct: 285 SAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEE 317
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 68/118 (57%), Gaps = 13/118 (11%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V+I + ++ ++E+ R + E G++ L +D+E G+S+GF
Sbjct: 218 KKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GKSRGFG 276
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIE 208
FV+F + + A+ A+DE++ KE+KG+ +L++G K E+E RK E
Sbjct: 277 FVNFSTHDSAQAAVDEMNDKEIKGQ-----------KLYVGRAQKKHEREEELRKQYE 323
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 50/128 (39%), Gaps = 46/128 (35%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES--------------------- 144
G +++ L D +E LR+L P G + ++M+D +
Sbjct: 335 GVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEK 394
Query: 145 -------------------------GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179
G+SKGF FV F S + A KA+ E++ + + GK +
Sbjct: 395 EGEEKTEEKPKESEEEPKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLY 454
Query: 180 CSLSETKN 187
+L++ K+
Sbjct: 455 VALAQRKD 462
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 131/273 (47%), Gaps = 14/273 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 49 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 108
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KGK R S+ + GNV KN K + D I
Sbjct: 109 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILS 168
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + S D +
Sbjct: 169 CKVAQDEFGNSKGYGFV-HYETAEAANNAIKHVNGMLL---NDKKVFVGHHISKKDRQSK 224
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
++KA +Y+KNI + E+ +++F++ GE+T + + GK R FGF++++
Sbjct: 225 FEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHD 284
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV + EI GQ L V A+ + +++ E
Sbjct: 285 SAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEE 317
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 68/118 (57%), Gaps = 13/118 (11%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V+I + ++ ++E+ R + E G++ L +D+E G+S+GF
Sbjct: 218 KKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GKSRGFG 276
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIE 208
FV+F + + A+ A+DE++ KE+KG+ +L++G K E+E RK E
Sbjct: 277 FVNFSTHDSAQAAVDEMNDKEIKGQ-----------KLYVGRAQKKHEREEELRKQYE 323
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 44/126 (34%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES--------------------- 144
G +++ L D +E LR+L P G + ++M+D +
Sbjct: 335 GVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEG 394
Query: 145 -----------------------GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181
G+SKGF FV F S + A KA+ E++ + + GK + +
Sbjct: 395 EEKTEEKPKESEEEAKKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVA 454
Query: 182 LSETKN 187
L++ K+
Sbjct: 455 LAQRKD 460
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 128/273 (46%), Gaps = 14/273 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ ++
Sbjct: 39 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGER 98
Query: 164 AIDELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+DEL+ +KGK R S+ L GNV KN K + D I
Sbjct: 99 ALDELNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILS 158
Query: 220 IKDPQNP-SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ ++G+ FV +Y A A + K +N N + S D +
Sbjct: 159 CKVAQDEFGVSKGYGFV-HYETAEAANNAIKHVNGMLL---NDKKVFVGHHISKKDRQSK 214
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
++KA +Y+KNI E+ ++LF++ GE+T + GK R FGF++++
Sbjct: 215 FEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHE 274
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV++ E+ Q L V A+ + +++ E
Sbjct: 275 SAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEE 307
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 129/284 (45%), Gaps = 39/284 (13%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + ++I + + +E+ R L E G++ L +D E G+S+GF
Sbjct: 208 KKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGFG 266
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIEDV 210
FV+F + E A+ A++E++ KE++ + +L++G K E+E RK E
Sbjct: 267 FVNFSTHESAQAAVEEMNDKEVRSQ-----------KLYVGRAQKKHEREEELRKQYEAA 315
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLN--------ANFKLDGNTP 262
+ S+ +G + LY N D K+ + K+ +T
Sbjct: 316 -----------RMEKASKYQGVN--LYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDTA 362
Query: 263 TISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKR 322
+ A P+S SA KA + E+ ++ ++ E P GKS +
Sbjct: 363 PVETATPESETKESANKENEKA---AEGEKEPAAEEKEKEEKKEAEQKPEKKPLGKS--K 417
Query: 323 DFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
FGF+ ++ A KAV + + ++G+ L V LA+ + ++++
Sbjct: 418 GFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQ 461
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 101/226 (44%), Gaps = 28/226 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G++ ++ +D E G SKG+ FV + + E A AI +
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGVSKGYGFVHYETAEAANNAIKHV 190
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + E K ++I N+ ++EFRK+ E G +
Sbjct: 191 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGE-I 249
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLD----GNTPTISWADPK 270
+ L +D + ++RGF FV + + A + ++M + + G + +
Sbjct: 250 TSATLSRDSE--GKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEE 307
Query: 271 STPDHSAA----ASQVKA--LYVKNIPDNTSTEKIKELFQRHGEVT 310
+ AA AS+ + LYVKN+ D+ +K++ELF +G +T
Sbjct: 308 LRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTIT 353
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 131/274 (47%), Gaps = 16/274 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 48 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 107
Query: 164 AIDELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KGK R S+ L GNV KN K + D I
Sbjct: 108 ALEDLNYTLIKGKPCRIMWSQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILS 167
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT---ISWADPKSTPDH 275
K Q+ N +G+ FV +Y A A + K +N D IS D +S D
Sbjct: 168 CKVAQDEFGNSKGYGFV-HYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDE 226
Query: 276 SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVM---PPGKSGKRDFGFIHYAER 332
A +Y+KNI + + E+ +++F++ GE+T + P GKS R FGF++Y+
Sbjct: 227 MKA--NFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKS--RGFGFVNYSTH 282
Query: 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
SA AV + E+ Q L V A+ + +++ E
Sbjct: 283 ESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEE 316
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 65/118 (55%), Gaps = 13/118 (11%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + ++I + D +EE+ R + E G++ L +D E G+S+GF
Sbjct: 217 KKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPE-GKSRGFG 275
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIE 208
FV++ + E A+ A+DE+H KE+K + +L++G K E+E RK E
Sbjct: 276 FVNYSTHESAQAAVDEMHDKEVKTQ-----------KLYVGRAQKKHEREEELRKQYE 322
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 52/134 (38%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD------------------------ 141
G +++ L D +E LR+L P G + ++M+D
Sbjct: 334 GVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRDSTPAERTETPDSEKEKEVNKENEK 393
Query: 142 ------------KES----------------GESKGFAFVSFRSKEFAKKAIDELHSKEL 173
KES G+SKGF FV F S + A KA+ E++ + +
Sbjct: 394 KEDEEKAAEEKPKESDEEKKDETKKSDKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMV 453
Query: 174 KGKTIRCSLSETKN 187
GK + +L++ K+
Sbjct: 454 NGKPLYVALAQRKD 467
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 133/279 (47%), Gaps = 28/279 (10%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
N + +++G L +E L ++ PIG V +R+ +D S +S G+A+V++ E +KA
Sbjct: 50 NSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKA 109
Query: 165 IDELHSKELKGKTIRCSLSET--------KNRLFIGN----VPKNWTEDEFRKVIEDVGP 212
I+EL+ ++G+ R S+ +FI N + D F + +
Sbjct: 110 IEELNYNPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSC 169
Query: 213 GVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST 272
V T E +++ F FV Y A+ + + N N L N + S
Sbjct: 170 KVATDEF-------GQSKCFGFVHY---ETAEAAEAAIENVNGMLL-NDREVFVGKHISK 218
Query: 273 PDHSAAASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFI 327
D + ++KA +YVKNI N S E ++LF G++T + + + GK + FGF+
Sbjct: 219 KDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFV 278
Query: 328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
++ + SA+KAV++ EI+GQ + V A+ + ++ E
Sbjct: 279 NFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEE 317
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 131/285 (45%), Gaps = 33/285 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + ++ D E G+SK F FV + + E A+ AI+ +
Sbjct: 142 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATD-EFGQSKCFGFVHYETAEAAEAAIENV 200
Query: 169 HSKELK------GKTIRCSLSETK--------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK I E+K +++ N+ N++E+ F K+ G +
Sbjct: 201 NGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGK-I 259
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+I L KD +++GF FV + ++ A + +++ + +++G + A K
Sbjct: 260 TSIYLEKD--QDGKSKGFGFVNFEDHESAVKAVEELNDK--EINGQKIYVGRAQKKRERL 315
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+ A Q L+VKN+ D +EK++E F+ G +T + ++GK
Sbjct: 316 EELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAGKS 375
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ + A KA+ + I+G+ L V LA+ + ++++
Sbjct: 376 KGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKDVRRSQ 420
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +F+ L E L + +P G + ++M D E+G+SKGF FV F + E A KAI
Sbjct: 335 GVNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVD-EAGKSKGFGFVCFTTPEEATKAI 393
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++++ + GK + +L++ K+
Sbjct: 394 TEMNTRMINGKPLYVALAQRKD 415
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 127/269 (47%), Gaps = 13/269 (4%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNVPKNWTEDEF-RKVIEDVGPGVETIELIKD 222
++ + LKG+ IR S+ L +GN+ ED K + D I K
Sbjct: 71 TMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFSTFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH----SAA 278
+ +RGF FV + + A Q+ +N + N + KS + A
Sbjct: 131 ACDEHGSRGFGFVHFETHEAA----QQAINTMNGMLLNDRKVFVGHFKSRREREAELGAR 186
Query: 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALK 337
A + +YVKN+P + + +++LF + G++ V VM R FGF+++ + A K
Sbjct: 187 ALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQK 246
Query: 338 AVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
AV E+ G++L A+ + +++ E
Sbjct: 247 AVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ +++ A+L A + +++ LP D E+ L+DL G + V++M+D SG S+
Sbjct: 174 KSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRD-NSGHSRC 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTI 178
F FV+F E A+KA+ ++ KE+ G+ +
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSGRLL 261
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/302 (21%), Positives = 117/302 (38%), Gaps = 59/302 (19%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G++ ++ D+ S+GF FV F + E A++AI+ +
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHG--SRGFGFVHFETHEAAQQAINTM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ +++ N+P + E + + G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKML 218
Query: 215 ETIELIKDPQNPSRNRGFSFV------------------------LYYNNACADYSRQKM 250
++++++D N +R F FV LY A RQ
Sbjct: 219 -SVKVMRD--NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNE 275
Query: 251 LNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310
L F+ Q LYVKN+ D+ +K+++ F +G +T
Sbjct: 276 LKRRFE--------------QMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVIT 321
Query: 311 KV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTF 369
VM G K FGF+ ++ A KAV + + + L V LA+ + ++K T
Sbjct: 322 SAKVMTEGGHSK-GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTN 380
Query: 370 PY 371
Y
Sbjct: 381 QY 382
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164
G +++ L ++ LR P G + ++M E G SKGF FV F S E A KA
Sbjct: 292 QGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMT--EGGHSKGFGFVCFSSPEEATKA 349
Query: 165 IDELHSKELKGKTIRCSLSETK 186
+ E++ + + K + +L++ K
Sbjct: 350 VTEMNGRIVGTKPLYVALAQRK 371
>sp|Q8IYX4|DND1_HUMAN Dead end protein homolog 1 OS=Homo sapiens GN=DND1 PE=1 SV=1
Length = 353
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 86/169 (50%), Gaps = 6/169 (3%)
Query: 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAK 162
PP GSEVFIG LP+D E L L + +G ++E RLM SG ++GFA+ + S+ A+
Sbjct: 54 PPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMT-FSGLNRGFAYARYSSRRGAQ 112
Query: 163 KAIDELHSKELKGKT--IRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELI 220
AI LH+ L+ + C +E K L + +P N T ++ +GPG++ L+
Sbjct: 113 AAIATLHNHPLRPSCPLLVCRSTE-KCELSVDGLPPNLTRSALLLALQPLGPGLQEARLL 171
Query: 221 KDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269
P P+ + + + + ++ A +++ ++ L G + W P
Sbjct: 172 PSP-GPAPGQ-IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEWLKP 218
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 93/343 (27%), Positives = 147/343 (42%), Gaps = 44/343 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L + G + ++ D G SKG+ FV F +E A+ AID+L
Sbjct: 148 VFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKL 206
Query: 169 HSKELKGKTIRC---------SLSETK-----NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + SE+ +++ N+PK T+DE +K G +
Sbjct: 207 NGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYG-DI 265
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ ++KD SR+ F FV + + A + +KM L + + A KS +
Sbjct: 266 SSAVVMKDQSGNSRS--FGFVNFVSPEAAAVAVEKM--NGISLGEDVLYVGRAQKKSDRE 321
Query: 275 HSAAAS------------QVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
Q LY+KN+ D+ + EK+KE+F +G VT VM +
Sbjct: 322 EELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLS 381
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE----GTFPYSPG-LV 376
R FGF+ Y+ AL A+K+ I + L V LA+ + +++ T SPG +
Sbjct: 382 RGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQIRSPGTMS 441
Query: 377 PTHLPHAGY-----GGFAGTPYGSVGTGF-GVAAGFQQPMIYG 413
P P +G+ GG P+ + G G QPM YG
Sbjct: 442 PVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQGLVPSQPMGYG 484
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 126/273 (46%), Gaps = 16/273 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
PN S +++G L +E L DL + V +R+ +D + S G+A+V+F + E A +
Sbjct: 57 PN-SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNFANPEDASR 114
Query: 164 AIDELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215
A++ L+ ++ + IR LS K +FI N+ + + G +
Sbjct: 115 AMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFG-TIL 173
Query: 216 TIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK-STPD 274
+ ++ D R++G+ FV + A + K LN D + +
Sbjct: 174 SCKVAMDVV--GRSKGYGFVQFEKEETAQAAIDK-LNGMLLNDKQVFVGHFVRRQDRARS 230
Query: 275 HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
S A +YVKN+P + +++K+ F ++G+++ V+ +SG R FGF+++
Sbjct: 231 ESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPE 290
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A AV+ + VL V A+ ++D++ E
Sbjct: 291 AAAVAVEKMNGISLGEDVLYVGRAQKKSDREEE 323
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 87/183 (47%), Gaps = 31/183 (16%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + V++ LPK+ ++++L+ GD+ +MKD +SG S+ F FV+F S E A
Sbjct: 236 PSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAV 294
Query: 164 AIDELHSKELKGKTIRCSLSETK------------------------NRLFIGNVPKNWT 199
A+++++ L + ++ K + L++ N+ +
Sbjct: 295 AVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVN 354
Query: 200 EDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG 259
+++ +++ + G V + +++ + Q S RGF FV Y N A + ++M N K+ G
Sbjct: 355 DEKLKEMFSEYG-NVTSCKVMMNSQGLS--RGFGFVAYSNPEEALLAMKEM---NGKMIG 408
Query: 260 NTP 262
P
Sbjct: 409 RKP 411
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 91/352 (25%), Positives = 145/352 (41%), Gaps = 52/352 (14%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D G + ++ D E G +KG+ FV F S E A AI+ +
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHV 228
Query: 169 HSKELKGKTIRC--------------SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + +L ++I N+ TE EF + G +
Sbjct: 229 NGMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGE-I 287
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
++ L+KD QN + RGF FV Y N+ CA + ++ + +K G + A K +
Sbjct: 288 TSLSLVKD-QN-DKPRGFGFVNYANHECAQKAVDELNDKEYK--GKKLYVGRAQKKHERE 343
Query: 275 HSAAAS--QVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
Q+K L++KN+ D E++K F G +T + + GK
Sbjct: 344 EELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKS 403
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY-SPGLVPTHL 380
+ FGF+ Y A KAV + + + G+ L V LA+ + ++++ +
Sbjct: 404 KGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQFRLQQ 463
Query: 381 PHAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRG--PMPS-----GMHMVP 425
A G YG+ G P+IYG G P+P+ GM MVP
Sbjct: 464 QVAAAAGIPAVQYGATG-----------PLIYGPGGYPIPAAVNGRGMPMVP 504
Score = 79.3 bits (194), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 131/273 (47%), Gaps = 14/273 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P + +++G L +E L +L IG V +R+ +D + S G+A+V+F + E +K
Sbjct: 77 PTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEK 136
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+DEL+ +KG+ R S+ + ++ GNV KN K + D I
Sbjct: 137 ALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILS 196
Query: 220 IKDPQNPSRN-RGFSFVLY----YNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
K + N +G+ FV + NA ++ +LN G+ +S + +S +
Sbjct: 197 CKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGH--HVSRRERQSKVE 254
Query: 275 HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
A + +Y+KN+ + ++ +LF + GE+T + + ++ K R FGF++YA
Sbjct: 255 --ALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHE 312
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
A KAV + E G+ L V A+ + +++ E
Sbjct: 313 CAQKAVDELNDKEYKGKKLYVGRAQKKHEREEE 345
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L + +E L+ G + ++M D E G+SKGF FV + + E A KA+
Sbjct: 363 GVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAV 421
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + L GK + +L++ K
Sbjct: 422 TEMNQRMLAGKPLYVALAQRK 442
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 128/266 (48%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ ++IG L D +E L + P G + +R+ +D + S +A+++F+ A++A+D
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + +KG+ IR S+ L +GNV KN E K + D I K
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ +RG+ FV + + A+ + Q M N D + + ++ A +
Sbjct: 131 VCDEHGSRGYGFVHFETHEAANRAIQTM-NGMLLNDRKVFVGHFKSRRERELEYGAKVME 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ ++++E+F G V + SG+ R FGF++Y A KAV
Sbjct: 190 FTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVS 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E++G+++ V A+ + ++++E
Sbjct: 250 EMNGKEVNGRMIYVGRAQKRIERQSE 275
Score = 60.1 bits (144), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 77/337 (22%), Positives = 135/337 (40%), Gaps = 52/337 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + + L D G++ +++ D+ S+G+ FV F + E A +AI +
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N ++ + R++ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--ST 272
++ D R+RGF FV Y N+ A + +M N +++G + A +
Sbjct: 219 SVKVMMDDS---GRSRGFGFVNYGNHEEAQKAVSEM-NGK-EVNGRMIYVGRAQKRIERQ 273
Query: 273 PDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
+ Q+K LYVKN+ D +++++ F +G +T VM G K
Sbjct: 274 SELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSK 333
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
FGF+ ++ A KAV + + + L V LA+ + ++K T Y L
Sbjct: 334 -GFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRL------ 386
Query: 382 HAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMP 418
A G GS FQQP Y MP
Sbjct: 387 -ATMRAMPGPLLGS----------FQQPANYFLSAMP 412
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L ++ LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMT--EGGHSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVSTKPLYVALAQRK 371
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 130/266 (48%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L DA+E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ E++K+LF + G V + +SGK + FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E++G+ + V A+ + +++TE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I +D +E L+DL G V++M D ESG+SKG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF E A+KA+DE++ KEL GK I ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ ++ RK G TI K R++GF FV +
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 135/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ +++ D E+G SKG+ FV F ++E A++AI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N ++ ++ + + GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPAL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--ST 272
+++++ D +++GF FV + + A + +M N +L+G + A K
Sbjct: 219 -SVKVMTD--ESGKSKGFGFVSFERHEDAQKAVDEM-NGK-ELNGKQIYVGRAQKKVERQ 273
Query: 273 PDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q+K LYVKN+ D E++++ F G +T KV+M G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + +++ T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVATKPLYVALAQRK 371
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 82.4 bits (202), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 129/266 (48%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ E++KELF + G V + +SGK + FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E++G+ + V A+ + +++TE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 65.9 bits (159), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I +D +E L++L G V++M D ESG+SKG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF E A+KA+DE++ KEL GK I ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ ++ RK G TI K R++GF FV +
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 136/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ +++ D E+G SKG+ FV F ++E A++AI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N ++ ++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--ST 272
+++++ D +++GF FV + + A + +M N +L+G + A K
Sbjct: 219 -SVKVMTD--ESGKSKGFGFVSFERHEDAQKAVDEM-NGK-ELNGKQIYVGRAQKKVERQ 273
Query: 273 PDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q+K LYVKN+ D E++++ F G +T KV+M G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + +++ T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVATKPLYVALAQRK 371
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 82.0 bits (201), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 68/266 (25%), Positives = 129/266 (48%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KGK +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G+ FV + A+ + +KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ E++KELF + G V + +SGK + FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E++G+ + V A+ + +++TE
Sbjct: 250 EMNGKELNGKQIYVGRAQKKVERQTE 275
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 78/172 (45%), Gaps = 29/172 (16%)
Query: 90 EDEKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKG 149
+ K++ A+L A + V+I +D +E L++L G V++M D ESG+SKG
Sbjct: 174 KSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKG 232
Query: 150 FAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK----------------------- 186
F FVSF E A+KA+DE++ KEL GK I ++ K
Sbjct: 233 FGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQ 292
Query: 187 -NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY 237
L++ N+ ++ RK G TI K R++GF FV +
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFG----TITSAKVMMEGGRSKGFGFVCF 340
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 136/291 (46%), Gaps = 37/291 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ +++ D E+G SKG+ FV F ++E A++AI+++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N ++ ++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPAL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--ST 272
+++++ D +++GF FV + + A + +M N +L+G + A K
Sbjct: 219 -SVKVMTD--ESGKSKGFGFVSFERHEDAQKAVDEM-NGK-ELNGKQIYVGRAQKKVERQ 273
Query: 273 PDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q+K LYVKN+ D E++++ F G +T KV+M G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPY 371
+ FGF+ ++ A KAV + + + L V LA+ + +++ T Y
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQY 382
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVATKPLYVALAQRK 371
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 125/266 (46%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + +KG+ IR S+ L +GNV KN E K + D I K
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ +RG+ FV + A+ + Q M N D + + ++ A +
Sbjct: 131 VCDEHGSRGYGFVHFETQEAANRAIQTM-NGMLLNDRKVFVGHFKSRRERELEYGAKVME 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVK 340
+Y+KN ++ ++++E+F G V VM R FGF++Y A KAV
Sbjct: 190 FTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVS 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E++G+++ V A+ + +++ E
Sbjct: 250 EMNGKEVNGRMIYVGRAQKRIERQGE 275
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 76/337 (22%), Positives = 135/337 (40%), Gaps = 52/337 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + + L D G++ +++ D+ S+G+ FV F ++E A +AI +
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N ++ + R++ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--ST 272
++ D R+RGF FV Y N+ A + +M +++G + A +
Sbjct: 219 SVKVMMDDT---GRSRGFGFVNYGNHEEAQKAVSEMNGK--EVNGRMIYVGRAQKRIERQ 273
Query: 273 PDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
+ Q+K LYVKN+ D +++++ F +G +T VM G K
Sbjct: 274 GELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSK 333
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
FGF+ ++ A KAV + + + L V LA+ + ++K T Y L
Sbjct: 334 -GFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRL------ 386
Query: 382 HAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMP 418
A G GS FQQP Y MP
Sbjct: 387 -ATMRAMPGPLLGS----------FQQPANYFLPAMP 412
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L ++ LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMT--EGGHSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVSTKPLYVALAQRK 371
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 133/285 (46%), Gaps = 33/285 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L D + L D G++ ++ D E+G+SKGF +V F E A +AID L
Sbjct: 125 IFIKNLHPDIDNKALYDTFSVFGNILSSKVATD-ETGKSKGFGYVHFEEDESASEAIDAL 183
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L G+ I +K ++I N+ T+ EF +++ G
Sbjct: 184 NGMLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELVAKFGK-T 242
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+++ L + P+ N+GF FV + N+ A +++ N FK G ++ A K
Sbjct: 243 DSVVLERTPE--GENKGFGFVNFVNHEDAVKCVEELNNTEFK--GQPLYVNRAQKKYERQ 298
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+T A Q L++KN+ D+ +K++E F +G +T + ++GK
Sbjct: 299 QELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTTENGKS 358
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ ++ A KA+ + + + G+ L V +A+ + ++++
Sbjct: 359 KGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQ 403
Score = 78.6 bits (192), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 129/270 (47%), Gaps = 14/270 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L SE L D+ PIG V +R+ +D + S G+A+V+F + AK AI+
Sbjct: 35 ASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIE 94
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
+L+ +KGK R S+ L GN+ KN D K + D I K
Sbjct: 95 KLNFTPIKGKLCRIMWSQRDPSLRKKGAGNIFIKNLHPDIDNKALYDTFSVFGNILSSKV 154
Query: 223 PQNPS-RNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
+ + +++GF +V + D S + ++A + N I S + + +
Sbjct: 155 ATDETGKSKGFGYVHFEE----DESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEE 210
Query: 282 VKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSAL 336
+KA +Y+KNI T+ ++ +EL + G+ VV+ G+ + FGF+++ A+
Sbjct: 211 MKANFTNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAV 270
Query: 337 KAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
K V++ E GQ L V A+ + +++ E
Sbjct: 271 KCVEELNNTEFKGQPLYVNRAQKKYERQQE 300
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L ++ L + P G + ++M E+G+SKGF FV F + E A KAI
Sbjct: 318 GINLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTT-ENGKSKGFGFVCFSTPEEATKAI 376
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E + + + GK + ++++ K+
Sbjct: 377 TEKNQQIVAGKPLYVAIAQRKD 398
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 129/273 (47%), Gaps = 20/273 (7%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +E L ++ PIG V +R+ +D S +S G+A+V++ E +KAI+
Sbjct: 52 ASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIE 111
Query: 167 ELHSKELKGKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218
EL+ ++G+ R S+ +FI N+ G + + +
Sbjct: 112 ELNYSPIEGRPCRIMWSQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGK-ILSCK 170
Query: 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
+ D S+ GF ++Y A A + + +N + N + S D +
Sbjct: 171 VATDDMGQSKCFGF---VHYETAEAAEAAIENVNG---MLLNDREVFVGKHISKKDRESK 224
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERS 333
++KA +YVKNI S E +K+LF +G +T + + GK + FGF++Y
Sbjct: 225 FEEIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHE 284
Query: 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A+KAV++ EI+GQ + V A+ + ++ E
Sbjct: 285 AAVKAVEELNDKEINGQKIYVGRAQKKRERMEE 317
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 131/285 (45%), Gaps = 33/285 (11%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + ++ D + G+SK F FV + + E A+ AI+ +
Sbjct: 142 IFIKNLHPAIDNKALHDTFSTFGKILSCKVATD-DMGQSKCFGFVHYETAEAAEAAIENV 200
Query: 169 HSKELK------GKTIRCSLSETK--------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK I E+K +++ N+ ++E++ +K+ G +
Sbjct: 201 NGMLLNDREVFVGKHISKKDRESKFEEIKANFTNIYVKNIDLEYSEEDLKKLFTPYG-AI 259
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+I L KD + S+ GF FV Y + A + +++ + +++G + A K
Sbjct: 260 TSIYLEKDAEGKSK--GFGFVNYEGHEAAVKAVEELNDK--EINGQKIYVGRAQKKRERM 315
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+T + Q L++KN+ D +EK++E F+ G +T + ++GK
Sbjct: 316 EELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDETGKS 375
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ ++ A KA+ + + G+ L V LA+ + ++++
Sbjct: 376 KGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVALAQRKDVRRSQ 420
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L E L + +P G + R+M D E+G+SKGF FV F S E A KAI
Sbjct: 335 GVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVD-ETGKSKGFGFVCFSSPEEATKAI 393
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++ + GK + +L++ K+
Sbjct: 394 TEMNQRMFFGKPLYVALAQRKD 415
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/270 (27%), Positives = 129/270 (47%), Gaps = 14/270 (5%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +E L +L IG V +R+ +D + S G+A+V++ + +KA++
Sbjct: 60 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 119
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
EL+ +KG+ R S+ L GN+ KN K + D I K
Sbjct: 120 ELNYTLIKGRPCRIMWSQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKV 179
Query: 223 PQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQ 281
Q+ N +G+ FV Y + A + K +N L+ + PK D + +
Sbjct: 180 AQDEHGNSKGYGFVHYETDEAASQAI-KHVNGML-LNEKKVYVGHHIPKK--DRQSKFEE 235
Query: 282 VKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSAL 336
+KA +YVKNI + + E+ +ELF + GEVT + + GK R FGF+++ +A
Sbjct: 236 MKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAA 295
Query: 337 KAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+AV + + GQ L V A+ + +++ E
Sbjct: 296 QAVDELNGKDFRGQDLYVGRAQKKHEREEE 325
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 73/326 (22%), Positives = 132/326 (40%), Gaps = 74/326 (22%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G++ ++ +D E G SKG+ FV + + E A +AI +
Sbjct: 150 IFIKNLDAAIDNKALHDTFAAFGNILSCKVAQD-EHGNSKGYGFVHYETDEAASQAIKHV 208
Query: 169 HSKELKGKTI-----------RCSLSETK---NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + + E K +++ N+ T++EFR++ G V
Sbjct: 209 NGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGE-V 267
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPD 274
+ L +D + ++RGF FV + + A + ++ +F+ G + A K +
Sbjct: 268 TSSSLARDQE--GKSRGFGFVNFTTHEAAAQAVDELNGKDFR--GQDLYVGRAQKKHERE 323
Query: 275 HSA-----AASQVKA-------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPG---- 317
AA KA LY+KN+ D+ +K++ +F +G +T VM
Sbjct: 324 EELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDKLRAMFSEYGPITSAKVMRDSLIEG 383
Query: 318 ------------------------------------KSGK-RDFGFIHYAERSSALKAVK 340
K GK + FGF+ ++ A KAV
Sbjct: 384 SEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGDRKLGKSKGFGFVCFSNPDDATKAVT 443
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ + +DG+ L V LA+ + +K++
Sbjct: 444 EMNQRMVDGKPLYVALAQRKDVRKSQ 469
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 81.6 bits (200), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 127/266 (47%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ ++IG L D +E L + P G + +R+ +D + S G+A+++F+ A++A+D
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ + +KG+ IR S+ L +GNV KN + K + D I K
Sbjct: 71 TMNFEVIKGRPIRIMWSQRDPGLRKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP-DHSAAASQ 281
+ +RG+ FV + A+ + Q M N D + + ++ A +
Sbjct: 131 VCDEYGSRGYGFVHFETQEAANRAIQTM-NGMLLNDRKVFVGHFKSRRERELEYGAKVME 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN ++ +++KE+F G V + SG+ R FGF++Y A KAV
Sbjct: 190 FTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVT 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ E++G+++ V A+ + +++ E
Sbjct: 250 EMNGKEVNGRMVYVGRAQKRIERQGE 275
Score = 60.1 bits (144), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 80/337 (23%), Positives = 140/337 (41%), Gaps = 52/337 (15%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
VFI L + L D GD+ +++ D E G S+G+ FV F ++E A +AI +
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCD-EYG-SRGYGFVHFETQEAANRAIQTM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N ++ + +++ G +
Sbjct: 159 NGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--ST 272
+++++ D N R+RGF FV Y N+ A + +M N +++G + A +
Sbjct: 219 -SVKVMMD--NSGRSRGFGFVNYGNHEEAQKAVTEM-NGK-EVNGRMVYVGRAQKRIERQ 273
Query: 273 PDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK 321
+ Q+K LYVKN+ D +++++ F +G +T VM G K
Sbjct: 274 GELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSK 333
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
FGF+ ++ A KAV + + + L V LA+ + ++K T Y L
Sbjct: 334 -GFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQRL------ 386
Query: 382 HAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMP 418
A G GS FQQP Y MP
Sbjct: 387 -ATMRAMPGPLLGS----------FQQPANYFLPTMP 412
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L ++ LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMT--EGGHSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVSTKPLYVALAQRK 371
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 149/325 (45%), Gaps = 23/325 (7%)
Query: 55 SKAGASEKDQSAEANRNDDDTPHVEEEEKPTASVGEDEKDKHAQLLALPPNGSEVFIGGL 114
S A A++ +S E N D P EE + GE E+ A + + +++G L
Sbjct: 2 SAADANQVQESLE-KLNLDSAPVASTEETEQTASGETEE--AADSAQVSDTSASLYVGEL 58
Query: 115 PKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 174
+E L ++ PIG V +R+ +D + +S G+A+V+F E +KAI++L+ ++
Sbjct: 59 NPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIE 118
Query: 175 GKTIRCSLSET--------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNP 226
G+ R S+ +FI N+ G + + ++ D
Sbjct: 119 GRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGK-ILSCKVATDDMGI 177
Query: 227 SRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKA-- 284
S+ GF ++Y A A + + +N N + S D + ++KA
Sbjct: 178 SKCFGF---VHYETAEAAEAAIENVNGMLL---NDREVYVGKHISKKDRESKFEEMKANF 231
Query: 285 --LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKD 341
+Y KNI + S E+ K+LF+ +G++T + + GK + FGF+++ SA+KAV +
Sbjct: 232 TNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDE 291
Query: 342 TEKYEIDGQVLEVVLAKPQTDKKTE 366
EI+GQ + V A+ + ++ E
Sbjct: 292 LNDKEINGQKIYVGRAQKKRERLEE 316
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 86/352 (24%), Positives = 155/352 (44%), Gaps = 37/352 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L + L D G + ++ D + G SK F FV + + E A+ AI+ +
Sbjct: 141 IFIKNLHPAIDNKALHDTFTAFGKILSCKVATD-DMGISKCFGFVHYETAEAAEAAIENV 199
Query: 169 HSKELK------GKTIRCSLSETK--------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L GK I E+K ++ N+ +++E+EF+K+ E G +
Sbjct: 200 NGMLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGK-I 258
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
+I L KD + +++GF FV + N+ A + ++ + +++G + A K
Sbjct: 259 TSIYLEKDHE--GKSKGFGFVNFENHESAVKAVDELNDK--EINGQKIYVGRAQKKRERL 314
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
+T + Q L++KN+ D +EK++E F+ G +T + ++GK
Sbjct: 315 EELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKS 374
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
+ FGF+ ++ A KA+ + + I G+ L V LA+ + ++++
Sbjct: 375 KGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVALAQRKDVRRSQLEQQIQARNQMRMQN 434
Query: 382 HAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMHMVPMVLPDGQI 433
A GG G + +G GF P G GP P M++P GQI
Sbjct: 435 AAATGGIPGQFIPPM--FYGQQPGFFPPNGRGNGPFPGPNPQ--MMMPRGQI 482
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +FI L E L + +P G + R+M D E+G+SKGF FV F S E A KAI
Sbjct: 334 GVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVD-ETGKSKGFGFVCFSSPEEATKAI 392
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++ + + GK + +L++ K+
Sbjct: 393 TEMNQRMIYGKPLYVALAQRKD 414
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 130/266 (48%), Gaps = 7/266 (2%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +D +E L + P G + +R+ +D + S G+A+V+F+ A++A+D
Sbjct: 11 ASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
++ +KG+ +R S+ L +GN+ KN + K + D I K
Sbjct: 71 TMNFDVIKGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKV 130
Query: 223 PQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKST-PDHSAAASQ 281
+ + ++G+ FV + A+ + KM N D + K + A A +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIDKM-NGMLLNDRKVFVGRFKSRKEREAELGARAKE 189
Query: 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340
+Y+KN D+ + E++KE+F ++G V + +GK + FGF+ + A KAV
Sbjct: 190 FTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVD 249
Query: 341 DTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ +++G+ + V A+ + +++TE
Sbjct: 250 EMNGKDMNGKSMFVGRAQKKVERQTE 275
Score = 65.5 bits (158), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 67/302 (22%), Positives = 140/302 (46%), Gaps = 37/302 (12%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
+FI L K + L D G++ +++ D E+G SKG+ FV F ++E A++AID++
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIDKM 158
Query: 169 HSKELKGKTIRCSLSETK--------------NRLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L + + +++ ++I N + ++ +++ GP +
Sbjct: 159 NGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPAL 218
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK--ST 272
+++++ D + +++GF FV + + A + +M + ++G + + A K
Sbjct: 219 -SVKVMTD--DNGKSKGFGFVSFERHEDAQKAVDEMNGKD--MNGKSMFVGRAQKKVERQ 273
Query: 273 PDHSAAASQVKA----------LYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSG 320
+ Q+K LYVKN+ D E++++ F G +T KV+M G+S
Sbjct: 274 TELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRS- 332
Query: 321 KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHL 380
+ FGF+ ++ A KAV + + + L V LA+ + +++ T Y + +
Sbjct: 333 -KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRV 391
Query: 381 PH 382
P+
Sbjct: 392 PN 393
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G +++ L +E LR P G + ++M E G SKGF FV F S E A KA+
Sbjct: 293 GVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVM--MEGGRSKGFGFVCFSSPEEATKAV 350
Query: 166 DELHSKELKGKTIRCSLSETK 186
E++ + + K + +L++ K
Sbjct: 351 TEMNGRIVATKPLYVALAQRK 371
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 88/341 (25%), Positives = 137/341 (40%), Gaps = 36/341 (10%)
Query: 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168
++I L + L D G + ++ D E G S+GF FV + S E A+ AI +
Sbjct: 136 IYIKNLDPAIDNKALHDTFSAFGQILSCKIATD-EFGNSRGFGFVHYESAESAESAIQHV 194
Query: 169 HSKELKGKTIRC-----------SLSETKN---RLFIGNVPKNWTEDEFRKVIEDVGPGV 214
+ L K + S E KN +FI N+ TE EF +++ G
Sbjct: 195 NGMLLNDKKVFVGPHVPKSDRMQSFEEQKNSFTNVFIKNLGTEITEAEFEELVNKFG--- 251
Query: 215 ETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPK---- 270
ET + + + GF FV Y + A + + FK GN A K
Sbjct: 252 ETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDGLSETEFK--GNKLFAGRAKKKYERA 309
Query: 271 --------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK- 321
++ Q LY+KN+ D +K++ F HG +T + ++GK
Sbjct: 310 DELRKQYEASRLEKLNKYQGVNLYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVDEAGKS 369
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLP 381
+ FGF+ Y+ A KAV + + G+ L VVLA+ + ++++
Sbjct: 370 KGFGFVCYSSPEEATKAVTEMNHRLVAGKPLYVVLAQRKDVRRSQLQQQIQAKNQMRLQQ 429
Query: 382 HAGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPSGMH 422
A GG G G+ G + GF P GRG MP G +
Sbjct: 430 QAAAGGLPGQYMGNPGVFYPGQPGFMPP---GRGGMPFGAN 467
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/268 (25%), Positives = 117/268 (43%), Gaps = 10/268 (3%)
Query: 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166
+ +++G L +E L ++ PIG V VR+ +D + S G+A+V+F ++ +A++
Sbjct: 46 ASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALE 105
Query: 167 ELHSKELKGKTIRCSLSETKNRLF---IGNV-PKNWTEDEFRKVIEDVGPGVETIELIKD 222
EL+ +K + R S+ L GN+ KN K + D I K
Sbjct: 106 ELNYSPIKERPCRIMWSQRDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAFGQILSCKI 165
Query: 223 PQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS--AAA 279
+ N RGF FV Y + A+ + Q + L+ + PKS S
Sbjct: 166 ATDEFGNSRGFGFVHYESAESAESAIQHV--NGMLLNDKKVFVGPHVPKSDRMQSFEEQK 223
Query: 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKA 338
+ +++KN+ + + +EL + GE + V + GK FGF+ Y E A+KA
Sbjct: 224 NSFTNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKA 283
Query: 339 VKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ + E G L AK + ++ E
Sbjct: 284 IDGLSETEFKGNKLFAGRAKKKYERADE 311
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165
G ++I L ++ LR P G + ++M D E+G+SKGF FV + S E A KA+
Sbjct: 329 GVNLYIKNLDDTIDDDKLRAEFAPHGTITSAKVMVD-EAGKSKGFGFVCYSSPEEATKAV 387
Query: 166 DELHSKELKGKTIRCSLSETKN 187
E++ + + GK + L++ K+
Sbjct: 388 TEMNHRLVAGKPLYVVLAQRKD 409
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/274 (26%), Positives = 132/274 (48%), Gaps = 15/274 (5%)
Query: 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163
P+ + +++G L +E L +L IG V +R+ +D + S G+A+V++ + ++
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 164 AIDELHSKELKGKTIRCSLSE---TKNRLFIGNV-PKNWTEDEFRKVIEDVGPGVETIEL 219
A+++L+ +KG+ R S+ + GNV KN K + D I
Sbjct: 112 ALEDLNYTLIKGRPCRIMWSQRDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILS 171
Query: 220 IKDPQNPSRN-RGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAA 278
K Q+ N +G+ FV +Y A A + K +N N + + D +
Sbjct: 172 CKVAQDEFGNSKGYGFV-HYETAEAAQNAIKHVNGMLL---NDKKVFVGHHIAKKDRQSK 227
Query: 279 ASQVKA----LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPP-GKSGK-RDFGFIHYAER 332
++KA +YVKNI +T+ E+ ++LF++ GE+T + +SGK R FGF+++
Sbjct: 228 FEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSH 287
Query: 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+A AV+ + GQ L V A+ + +++ E
Sbjct: 288 DNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEE 321
Score = 75.5 bits (184), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 129/285 (45%), Gaps = 38/285 (13%)
Query: 92 EKDKHAQLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFA 151
+KD+ ++ + N + V++ + +D +EE+ RDL E G++ L +D ESG+S+GF
Sbjct: 221 KKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFG 280
Query: 152 FVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNW-TEDEFRKVIEDV 210
FV+F S + A A++ L+ K+ KG+ +L++G K E+E RK E
Sbjct: 281 FVNFTSHDNAAAAVEALNDKDFKGQ-----------KLYVGRAQKKHEREEELRKQYE-- 327
Query: 211 GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKM--LNANFKLDGNTPTISWAD 268
IE S+ +G + LY N D +K+ L +++ + +
Sbjct: 328 ---AARIE------KASKYQGVN--LYIKNLSDDIDDEKLRELFSSYGTITSAKVMRDFA 376
Query: 269 PKSTPDH-------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321
P+ST D S + DN + KE + P GKS
Sbjct: 377 PESTSDSEKEAKKDSKEPETKEEEPKDEAGDNAENKDNKE--NKAESKKSEKKPLGKS-- 432
Query: 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKKTE 366
+ FGF+ ++ A KAV + + + G+ L V LA+ + ++++
Sbjct: 433 KGFGFVCFSSPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRRSQ 477
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 189,567,027
Number of Sequences: 539616
Number of extensions: 9291104
Number of successful extensions: 80000
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1603
Number of HSP's successfully gapped in prelim test: 1237
Number of HSP's that attempted gapping in prelim test: 41758
Number of HSP's gapped (non-prelim): 20229
length of query: 437
length of database: 191,569,459
effective HSP length: 120
effective length of query: 317
effective length of database: 126,815,539
effective search space: 40200525863
effective search space used: 40200525863
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)