Query 013716
Match_columns 437
No_of_seqs 379 out of 3230
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 06:40:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013716.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013716hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0117 Heterogeneous nuclear 100.0 6.6E-56 1.4E-60 390.8 30.1 327 103-436 80-417 (506)
2 TIGR01648 hnRNP-R-Q heterogene 100.0 1.1E-46 2.4E-51 360.9 35.2 252 104-363 56-310 (578)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.4E-46 7.3E-51 352.1 32.0 256 105-362 2-351 (352)
4 TIGR01628 PABP-1234 polyadenyl 100.0 2.4E-44 5.3E-49 358.4 36.3 252 108-362 2-366 (562)
5 KOG0145 RNA-binding protein EL 100.0 1.6E-43 3.5E-48 291.0 23.0 254 105-360 40-358 (360)
6 KOG0148 Apoptosis-promoting RN 100.0 5.2E-40 1.1E-44 272.1 22.4 227 105-364 5-242 (321)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 6.5E-38 1.4E-42 304.1 30.3 242 105-361 1-352 (481)
8 TIGR01622 SF-CC1 splicing fact 100.0 2.7E-37 5.8E-42 301.3 30.1 251 103-360 86-448 (457)
9 KOG0127 Nucleolar protein fibr 100.0 5.8E-37 1.3E-41 277.2 23.3 252 106-362 5-380 (678)
10 TIGR01642 U2AF_lg U2 snRNP aux 100.0 3.4E-36 7.4E-41 297.7 27.9 245 104-359 173-501 (509)
11 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 8.1E-36 1.8E-40 289.5 29.4 242 106-360 96-480 (481)
12 TIGR01659 sex-lethal sex-letha 100.0 3.7E-35 8E-40 268.7 26.9 172 102-363 103-278 (346)
13 TIGR01645 half-pint poly-U bin 100.0 8.7E-35 1.9E-39 279.3 29.9 162 104-269 105-283 (612)
14 KOG0144 RNA-binding protein CU 100.0 3.7E-36 7.9E-41 264.8 18.6 252 107-362 35-506 (510)
15 KOG0123 Polyadenylate-binding 100.0 1.6E-31 3.6E-36 245.7 20.2 250 106-363 76-352 (369)
16 KOG0123 Polyadenylate-binding 100.0 9.9E-31 2.1E-35 240.6 21.8 241 108-361 3-247 (369)
17 KOG0127 Nucleolar protein fibr 100.0 1.5E-29 3.3E-34 229.3 15.6 234 106-342 117-516 (678)
18 TIGR01645 half-pint poly-U bin 100.0 1.1E-27 2.5E-32 230.3 24.6 174 186-363 107-287 (612)
19 KOG0124 Polypyrimidine tract-b 100.0 4.8E-28 1E-32 209.1 19.2 248 106-357 113-532 (544)
20 KOG0110 RNA-binding protein (R 100.0 3.1E-28 6.6E-33 228.2 17.6 250 104-362 383-695 (725)
21 KOG0147 Transcriptional coacti 100.0 1.6E-28 3.4E-33 224.1 13.0 250 102-359 175-527 (549)
22 KOG0144 RNA-binding protein CU 100.0 1.6E-27 3.5E-32 210.5 14.2 172 187-365 35-211 (510)
23 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 7.7E-26 1.7E-30 213.5 23.0 168 185-362 2-173 (352)
24 KOG0148 Apoptosis-promoting RN 99.9 1.1E-26 2.5E-31 193.1 14.6 157 106-272 62-240 (321)
25 KOG4211 Splicing factor hnRNP- 99.9 3E-25 6.5E-30 200.1 23.7 245 102-358 6-356 (510)
26 KOG0131 Splicing factor 3b, su 99.9 1.9E-26 4.1E-31 180.7 12.3 170 105-363 8-180 (203)
27 KOG4212 RNA-binding protein hn 99.9 5E-25 1.1E-29 194.8 22.7 145 105-253 43-279 (608)
28 TIGR01648 hnRNP-R-Q heterogene 99.9 1.3E-24 2.9E-29 209.1 24.0 193 104-308 136-367 (578)
29 TIGR01622 SF-CC1 splicing fact 99.9 7.6E-25 1.6E-29 213.8 21.3 172 184-360 87-266 (457)
30 TIGR01628 PABP-1234 polyadenyl 99.9 1.1E-24 2.3E-29 217.5 18.5 167 188-362 2-169 (562)
31 KOG0145 RNA-binding protein EL 99.9 1.8E-24 4E-29 178.8 15.2 169 185-363 40-212 (360)
32 KOG0109 RNA-binding protein LA 99.9 1.3E-24 2.9E-29 182.6 14.4 152 108-365 4-155 (346)
33 KOG0117 Heterogeneous nuclear 99.9 1.1E-23 2.4E-28 187.2 19.8 190 155-364 41-252 (506)
34 KOG4205 RNA-binding protein mu 99.9 4.2E-23 9.1E-28 183.0 17.0 176 105-366 5-182 (311)
35 KOG0146 RNA-binding protein ET 99.9 1.6E-22 3.5E-27 168.0 13.7 260 103-363 16-368 (371)
36 KOG1190 Polypyrimidine tract-b 99.9 2E-21 4.4E-26 170.9 19.1 244 104-363 26-376 (492)
37 TIGR01642 U2AF_lg U2 snRNP aux 99.9 9.9E-22 2.2E-26 194.6 18.7 162 105-269 294-501 (509)
38 KOG0110 RNA-binding protein (R 99.9 6.2E-22 1.3E-26 186.2 14.6 222 104-358 225-596 (725)
39 KOG0124 Polypyrimidine tract-b 99.9 3.6E-20 7.7E-25 160.7 17.1 170 187-360 114-290 (544)
40 KOG4206 Spliceosomal protein s 99.8 2.2E-19 4.7E-24 147.4 18.0 208 105-358 8-220 (221)
41 PLN03134 glycine-rich RNA-bind 99.8 4.1E-19 8.9E-24 142.4 14.8 82 280-361 32-115 (144)
42 KOG1548 Transcription elongati 99.8 9.4E-18 2E-22 145.1 19.2 203 103-360 131-352 (382)
43 KOG1365 RNA-binding protein Fu 99.8 1.7E-18 3.7E-23 151.3 14.4 250 105-360 59-362 (508)
44 KOG0120 Splicing factor U2AF, 99.8 2.2E-18 4.9E-23 160.4 15.9 241 105-359 174-491 (500)
45 KOG0105 Alternative splicing f 99.8 2.6E-17 5.6E-22 129.6 18.3 174 104-349 4-177 (241)
46 KOG1190 Polypyrimidine tract-b 99.8 6.8E-17 1.5E-21 142.6 20.3 237 108-359 152-490 (492)
47 KOG1456 Heterogeneous nuclear 99.8 7.1E-17 1.5E-21 140.8 19.9 245 102-362 27-365 (494)
48 PLN03134 glycine-rich RNA-bind 99.8 7E-18 1.5E-22 135.3 11.3 83 104-186 32-114 (144)
49 KOG0147 Transcriptional coacti 99.7 7.2E-18 1.6E-22 154.8 10.2 174 186-364 179-362 (549)
50 KOG1457 RNA binding protein (c 99.7 1.8E-16 4E-21 128.7 14.7 227 105-348 33-274 (284)
51 KOG4211 Splicing factor hnRNP- 99.7 4.8E-16 1E-20 141.0 17.4 166 188-362 12-184 (510)
52 KOG0125 Ataxin 2-binding prote 99.7 2.7E-16 6E-21 135.1 10.6 88 279-366 93-180 (376)
53 PF00076 RRM_1: RNA recognitio 99.7 6.5E-16 1.4E-20 109.2 8.7 70 109-179 1-70 (70)
54 TIGR01659 sex-lethal sex-letha 99.6 6.1E-15 1.3E-19 135.7 15.6 81 280-360 105-187 (346)
55 PF00076 RRM_1: RNA recognitio 99.6 1.1E-15 2.5E-20 107.9 8.4 69 285-353 1-70 (70)
56 KOG1456 Heterogeneous nuclear 99.6 2.5E-13 5.4E-18 118.9 23.1 240 107-360 121-491 (494)
57 KOG0122 Translation initiation 99.6 2.5E-15 5.3E-20 124.2 9.4 82 105-186 188-269 (270)
58 KOG0149 Predicted RNA-binding 99.6 9.4E-16 2E-20 126.3 6.9 77 106-183 12-88 (247)
59 PF14259 RRM_6: RNA recognitio 99.6 4.1E-15 8.9E-20 104.8 9.2 70 109-179 1-70 (70)
60 KOG0122 Translation initiation 99.6 5E-15 1.1E-19 122.4 8.6 80 281-360 188-269 (270)
61 KOG0106 Alternative splicing f 99.6 4.1E-15 8.9E-20 123.9 7.8 167 107-357 2-168 (216)
62 KOG0121 Nuclear cap-binding pr 99.6 5E-15 1.1E-19 109.6 6.9 82 103-184 33-114 (153)
63 KOG4212 RNA-binding protein hn 99.6 1.7E-13 3.7E-18 122.3 17.8 171 186-360 44-294 (608)
64 PLN03120 nucleic acid binding 99.6 1.6E-14 3.4E-19 123.7 10.1 76 106-185 4-79 (260)
65 PLN03120 nucleic acid binding 99.6 1.8E-14 3.9E-19 123.4 10.4 77 282-360 4-80 (260)
66 PF14259 RRM_6: RNA recognitio 99.6 1.6E-14 3.4E-19 101.8 8.3 69 285-353 1-70 (70)
67 KOG0114 Predicted RNA-binding 99.6 2.8E-14 6.1E-19 101.5 8.9 78 282-360 18-95 (124)
68 KOG0121 Nuclear cap-binding pr 99.5 2E-14 4.2E-19 106.5 7.9 78 281-358 35-114 (153)
69 KOG0105 Alternative splicing f 99.5 4.6E-14 1E-18 111.5 10.3 77 281-358 5-81 (241)
70 KOG0126 Predicted RNA-binding 99.5 1.1E-15 2.4E-20 120.3 1.2 86 99-184 28-113 (219)
71 COG0724 RNA-binding proteins ( 99.5 1.2E-13 2.7E-18 126.8 13.4 168 106-340 115-285 (306)
72 KOG0114 Predicted RNA-binding 99.5 6.1E-14 1.3E-18 99.8 8.5 80 105-187 17-96 (124)
73 KOG0113 U1 small nuclear ribon 99.5 3.6E-14 7.9E-19 120.7 8.7 82 104-185 99-180 (335)
74 KOG0149 Predicted RNA-binding 99.5 1.2E-13 2.7E-18 113.9 11.5 77 282-359 12-90 (247)
75 PLN03121 nucleic acid binding 99.5 7.1E-14 1.5E-18 117.6 10.1 78 104-185 3-80 (243)
76 KOG4207 Predicted splicing fac 99.5 5.3E-14 1.1E-18 113.2 8.8 81 282-362 13-95 (256)
77 KOG0125 Ataxin 2-binding prote 99.5 4.6E-14 1E-18 121.6 8.1 80 105-186 95-174 (376)
78 PLN03213 repressor of silencin 99.5 6.8E-14 1.5E-18 126.7 9.3 77 282-360 10-88 (759)
79 KOG0107 Alternative splicing f 99.5 3.1E-13 6.7E-18 106.2 11.7 78 282-362 10-87 (195)
80 KOG4207 Predicted splicing fac 99.5 2.6E-14 5.7E-19 114.9 5.7 80 105-184 12-91 (256)
81 PLN03213 repressor of silencin 99.5 6.9E-14 1.5E-18 126.7 8.8 78 105-186 9-88 (759)
82 KOG0107 Alternative splicing f 99.5 1.3E-13 2.8E-18 108.3 7.5 76 105-185 9-84 (195)
83 KOG0113 U1 small nuclear ribon 99.5 1.1E-12 2.3E-17 111.9 13.3 83 280-362 99-183 (335)
84 smart00362 RRM_2 RNA recogniti 99.5 4.4E-13 9.5E-18 94.9 9.3 72 108-181 1-72 (72)
85 KOG0111 Cyclophilin-type pepti 99.5 8.5E-14 1.8E-18 113.0 5.4 86 280-365 8-95 (298)
86 smart00362 RRM_2 RNA recogniti 99.4 7.2E-13 1.6E-17 93.8 9.4 72 284-355 1-72 (72)
87 PLN03121 nucleic acid binding 99.4 6.8E-13 1.5E-17 111.7 10.4 77 281-359 4-80 (243)
88 KOG0130 RNA-binding protein RB 99.4 2.1E-13 4.5E-18 102.0 6.1 81 104-184 70-150 (170)
89 KOG0111 Cyclophilin-type pepti 99.4 2.2E-13 4.8E-18 110.6 6.2 84 104-187 8-91 (298)
90 smart00360 RRM RNA recognition 99.4 8.3E-13 1.8E-17 93.2 8.5 71 111-181 1-71 (71)
91 PF13893 RRM_5: RNA recognitio 99.4 1.1E-12 2.4E-17 87.6 8.2 56 299-357 1-56 (56)
92 cd00590 RRM RRM (RNA recogniti 99.4 3.2E-12 7E-17 91.0 9.8 73 284-356 1-74 (74)
93 KOG0130 RNA-binding protein RB 99.4 1.2E-12 2.5E-17 98.0 7.4 82 280-361 70-153 (170)
94 KOG0126 Predicted RNA-binding 99.4 1E-13 2.2E-18 109.4 1.4 76 283-358 36-113 (219)
95 cd00590 RRM RRM (RNA recogniti 99.4 4.1E-12 8.9E-17 90.4 9.8 74 108-182 1-74 (74)
96 KOG0128 RNA-binding protein SA 99.4 1.2E-13 2.6E-18 133.5 2.0 231 105-363 570-818 (881)
97 smart00360 RRM RNA recognition 99.4 3.2E-12 7E-17 90.1 8.1 69 287-355 1-71 (71)
98 KOG0108 mRNA cleavage and poly 99.4 2E-12 4.4E-17 120.5 8.5 80 107-186 19-98 (435)
99 KOG4660 Protein Mei2, essentia 99.3 4.2E-12 9.2E-17 117.6 9.4 73 103-180 72-144 (549)
100 KOG0131 Splicing factor 3b, su 99.3 2.6E-12 5.6E-17 101.7 5.9 79 280-358 7-87 (203)
101 KOG0132 RNA polymerase II C-te 99.3 4.9E-11 1.1E-15 114.3 15.2 79 282-364 421-499 (894)
102 smart00361 RRM_1 RNA recogniti 99.3 1.5E-11 3.2E-16 86.0 7.9 61 120-180 2-69 (70)
103 PF13893 RRM_5: RNA recognitio 99.3 2.5E-11 5.4E-16 81.0 8.0 56 123-183 1-56 (56)
104 KOG0116 RasGAP SH3 binding pro 99.3 5E-11 1.1E-15 110.6 12.2 79 283-362 289-369 (419)
105 KOG0129 Predicted RNA-binding 99.3 3.3E-10 7.2E-15 104.3 17.1 170 102-341 255-432 (520)
106 KOG0108 mRNA cleavage and poly 99.3 3.3E-11 7.1E-16 112.5 10.8 81 283-363 19-101 (435)
107 smart00361 RRM_1 RNA recogniti 99.2 3.3E-11 7.2E-16 84.3 7.7 60 296-355 2-70 (70)
108 KOG1365 RNA-binding protein Fu 99.2 1.1E-11 2.4E-16 109.1 6.3 143 107-253 162-347 (508)
109 KOG4307 RNA binding protein RB 99.2 1.1E-10 2.4E-15 110.4 12.5 163 190-358 315-512 (944)
110 COG0724 RNA-binding proteins ( 99.2 8.1E-11 1.8E-15 108.0 10.1 78 282-359 115-194 (306)
111 KOG0146 RNA-binding protein ET 99.2 1.9E-11 4.1E-16 102.5 5.1 87 101-187 280-366 (371)
112 KOG0109 RNA-binding protein LA 99.2 3.2E-11 6.9E-16 102.6 6.1 73 283-361 3-75 (346)
113 KOG4206 Spliceosomal protein s 99.2 9E-11 2E-15 97.0 7.8 78 283-362 10-92 (221)
114 KOG4210 Nuclear localization s 99.2 1.1E-10 2.3E-15 104.2 8.4 178 105-362 87-266 (285)
115 KOG4208 Nucleolar RNA-binding 99.1 1.6E-10 3.4E-15 93.9 8.3 83 104-186 47-130 (214)
116 KOG4307 RNA binding protein RB 99.1 4E-10 8.7E-15 106.7 11.8 74 283-356 868-943 (944)
117 KOG0415 Predicted peptidyl pro 99.1 7.3E-11 1.6E-15 103.0 5.9 84 102-185 235-318 (479)
118 KOG0120 Splicing factor U2AF, 99.1 3.4E-10 7.4E-15 106.3 10.6 162 104-268 287-490 (500)
119 KOG0415 Predicted peptidyl pro 99.1 2.6E-10 5.6E-15 99.6 6.6 83 280-362 237-321 (479)
120 KOG4454 RNA binding protein (R 99.0 7.4E-11 1.6E-15 96.2 2.0 135 104-250 7-145 (267)
121 KOG4661 Hsp27-ERE-TATA-binding 99.0 6.8E-10 1.5E-14 102.9 7.9 82 280-361 403-486 (940)
122 KOG0112 Large RNA-binding prot 99.0 2.2E-10 4.8E-15 111.8 4.6 165 102-363 368-534 (975)
123 KOG4661 Hsp27-ERE-TATA-binding 99.0 1.1E-09 2.4E-14 101.5 8.7 84 102-185 401-484 (940)
124 KOG0132 RNA polymerase II C-te 99.0 1.7E-08 3.6E-13 97.4 15.5 107 187-304 422-528 (894)
125 KOG0153 Predicted RNA-binding 99.0 2.4E-09 5.1E-14 93.7 8.5 75 281-359 227-302 (377)
126 KOG1457 RNA binding protein (c 98.9 6.6E-09 1.4E-13 85.2 10.0 83 282-364 34-122 (284)
127 KOG4208 Nucleolar RNA-binding 98.9 3.5E-09 7.5E-14 86.2 7.2 79 282-360 49-130 (214)
128 KOG0128 RNA-binding protein SA 98.9 2.3E-10 4.9E-15 111.3 -0.6 135 105-253 666-800 (881)
129 KOG4676 Splicing factor, argin 98.9 4.3E-10 9.3E-15 99.6 0.9 213 107-359 8-225 (479)
130 PF04059 RRM_2: RNA recognitio 98.9 2.3E-08 5E-13 73.1 9.3 79 106-184 1-85 (97)
131 KOG0153 Predicted RNA-binding 98.9 8.5E-09 1.8E-13 90.3 8.0 78 102-185 224-302 (377)
132 KOG0533 RRM motif-containing p 98.8 8.3E-08 1.8E-12 82.5 13.4 81 283-363 84-165 (243)
133 PF04059 RRM_2: RNA recognitio 98.8 3.6E-08 7.8E-13 72.1 8.5 79 283-361 2-88 (97)
134 KOG0226 RNA-binding proteins [ 98.8 4E-09 8.8E-14 88.3 3.9 135 225-361 135-271 (290)
135 KOG4205 RNA-binding protein mu 98.7 1.1E-08 2.4E-13 91.6 5.4 83 105-188 96-178 (311)
136 KOG0533 RRM motif-containing p 98.7 5E-08 1.1E-12 83.8 8.7 83 103-186 80-162 (243)
137 KOG4209 Splicing factor RNPS1, 98.7 2.3E-08 4.9E-13 86.3 6.3 83 102-185 97-179 (231)
138 KOG2193 IGF-II mRNA-binding pr 98.7 4.2E-09 9E-14 94.3 0.8 158 187-362 2-159 (584)
139 KOG0116 RasGAP SH3 binding pro 98.7 5E-08 1.1E-12 90.9 7.0 78 105-183 287-364 (419)
140 KOG1548 Transcription elongati 98.6 1.3E-07 2.7E-12 83.1 7.6 79 282-360 134-221 (382)
141 PF11608 Limkain-b1: Limkain b 98.6 2.5E-07 5.4E-12 64.0 7.4 70 283-360 3-77 (90)
142 KOG4454 RNA binding protein (R 98.6 2.7E-08 5.8E-13 81.5 2.7 137 184-345 7-148 (267)
143 PF11608 Limkain-b1: Limkain b 98.6 3.1E-07 6.7E-12 63.5 7.3 70 107-186 3-77 (90)
144 KOG3152 TBP-binding protein, a 98.6 3.6E-08 7.9E-13 82.9 3.0 73 105-177 73-157 (278)
145 KOG4660 Protein Mei2, essentia 98.6 8.2E-08 1.8E-12 89.7 5.6 71 280-353 73-143 (549)
146 KOG0226 RNA-binding proteins [ 98.5 7.1E-08 1.5E-12 81.0 4.2 82 103-184 187-268 (290)
147 KOG0106 Alternative splicing f 98.5 1.7E-07 3.6E-12 78.7 6.1 74 283-362 2-75 (216)
148 KOG4209 Splicing factor RNPS1, 98.5 5.9E-07 1.3E-11 77.7 9.2 80 280-360 99-180 (231)
149 KOG0151 Predicted splicing reg 98.4 8.1E-07 1.8E-11 85.1 8.3 83 279-361 171-258 (877)
150 KOG1995 Conserved Zn-finger pr 98.4 1.3E-06 2.9E-11 77.5 8.0 84 280-363 64-157 (351)
151 KOG0151 Predicted splicing reg 98.4 8.4E-07 1.8E-11 85.0 6.9 82 103-184 171-255 (877)
152 KOG4849 mRNA cleavage factor I 98.4 1.4E-06 3E-11 76.5 7.5 72 283-354 81-156 (498)
153 PF08777 RRM_3: RNA binding mo 98.3 2E-06 4.4E-11 64.7 5.9 71 283-357 2-77 (105)
154 KOG1995 Conserved Zn-finger pr 98.2 2.1E-06 4.5E-11 76.4 4.4 83 105-187 65-155 (351)
155 COG5175 MOT2 Transcriptional r 98.1 6.4E-06 1.4E-10 72.2 6.5 89 106-194 114-212 (480)
156 PF08777 RRM_3: RNA binding mo 98.1 7.5E-06 1.6E-10 61.6 5.6 59 107-171 2-60 (105)
157 KOG0115 RNA-binding protein p5 98.0 2.5E-05 5.5E-10 66.1 8.2 87 242-343 6-93 (275)
158 KOG4849 mRNA cleavage factor I 97.9 1.7E-05 3.7E-10 69.8 5.3 78 106-183 80-159 (498)
159 KOG2314 Translation initiation 97.9 5E-05 1.1E-09 71.4 8.3 76 283-358 59-142 (698)
160 KOG4210 Nuclear localization s 97.8 1.2E-05 2.6E-10 72.1 3.1 81 105-186 183-264 (285)
161 COG5175 MOT2 Transcriptional r 97.8 6.6E-05 1.4E-09 66.0 6.7 78 282-359 114-202 (480)
162 KOG3152 TBP-binding protein, a 97.8 1.7E-05 3.6E-10 67.2 2.7 69 283-351 75-157 (278)
163 PF14605 Nup35_RRM_2: Nup53/35 97.7 7.5E-05 1.6E-09 48.4 4.9 52 107-165 2-53 (53)
164 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00015 3.3E-09 46.9 5.7 52 283-339 2-53 (53)
165 KOG1855 Predicted RNA-binding 97.7 0.00076 1.6E-08 61.6 11.8 66 280-345 229-309 (484)
166 KOG2193 IGF-II mRNA-binding pr 97.6 1.7E-05 3.6E-10 71.8 1.0 135 108-253 3-142 (584)
167 KOG0115 RNA-binding protein p5 97.5 0.00024 5.2E-09 60.4 6.3 92 160-255 6-97 (275)
168 PF05172 Nup35_RRM: Nup53/35/4 97.5 0.00065 1.4E-08 50.3 7.8 74 283-358 7-90 (100)
169 KOG2202 U2 snRNP splicing fact 97.5 5.2E-05 1.1E-09 64.5 2.2 63 297-359 83-147 (260)
170 KOG0129 Predicted RNA-binding 97.5 0.0004 8.6E-09 65.1 7.9 65 103-167 367-432 (520)
171 KOG2314 Translation initiation 97.4 0.0003 6.6E-09 66.3 6.2 77 105-182 57-140 (698)
172 KOG1855 Predicted RNA-binding 97.4 0.00016 3.4E-09 65.9 3.6 68 105-172 230-310 (484)
173 PF08952 DUF1866: Domain of un 97.4 0.0011 2.4E-08 52.0 7.8 57 298-361 52-108 (146)
174 KOG1996 mRNA splicing factor [ 97.3 0.00067 1.4E-08 58.7 6.7 77 283-359 282-366 (378)
175 PF08952 DUF1866: Domain of un 97.3 0.001 2.3E-08 52.2 7.0 79 99-186 20-107 (146)
176 KOG2416 Acinus (induces apopto 97.3 0.00086 1.9E-08 63.8 7.7 79 280-362 442-524 (718)
177 KOG2202 U2 snRNP splicing fact 97.3 7.7E-05 1.7E-09 63.5 0.6 63 121-184 83-146 (260)
178 PF05172 Nup35_RRM: Nup53/35/4 97.2 0.0018 3.8E-08 48.0 7.2 76 106-183 6-89 (100)
179 KOG2416 Acinus (induces apopto 97.2 0.00055 1.2E-08 65.0 5.6 80 102-187 440-523 (718)
180 KOG4676 Splicing factor, argin 97.2 0.00073 1.6E-08 60.9 5.8 76 283-359 8-88 (479)
181 KOG1924 RhoA GTPase effector D 97.1 0.0014 3.1E-08 64.4 7.7 11 158-168 209-219 (1102)
182 PF10309 DUF2414: Protein of u 96.7 0.011 2.4E-07 39.2 6.8 54 283-342 6-62 (62)
183 PF04931 DNA_pol_phi: DNA poly 96.4 0.0022 4.7E-08 67.0 3.4 7 122-128 740-746 (784)
184 KOG2318 Uncharacterized conser 96.4 0.014 3.1E-07 55.7 8.2 74 103-176 171-296 (650)
185 KOG1996 mRNA splicing factor [ 96.4 0.0098 2.1E-07 51.7 6.5 77 107-183 282-364 (378)
186 KOG1924 RhoA GTPase effector D 96.3 0.015 3.3E-07 57.5 7.7 14 118-131 83-96 (1102)
187 PF15023 DUF4523: Protein of u 96.2 0.015 3.3E-07 45.0 6.0 71 281-357 85-159 (166)
188 KOG0112 Large RNA-binding prot 96.2 0.0018 3.9E-08 64.7 1.3 79 281-359 371-450 (975)
189 PF15023 DUF4523: Protein of u 96.1 0.031 6.8E-07 43.4 7.2 75 102-184 82-160 (166)
190 KOG2591 c-Mpl binding protein, 96.1 0.036 7.8E-07 52.8 9.0 69 283-356 176-248 (684)
191 PF03467 Smg4_UPF3: Smg-4/UPF3 96.1 0.0094 2E-07 49.6 4.5 70 105-174 6-81 (176)
192 PF10309 DUF2414: Protein of u 96.0 0.036 7.9E-07 36.8 6.2 53 107-168 6-62 (62)
193 PF08675 RNA_bind: RNA binding 96.0 0.051 1.1E-06 38.1 7.0 55 107-170 10-64 (87)
194 PF04847 Calcipressin: Calcipr 95.9 0.035 7.6E-07 46.4 7.0 63 295-361 8-72 (184)
195 KOG1999 RNA polymerase II tran 95.8 0.026 5.7E-07 57.4 7.1 29 146-174 208-236 (1024)
196 PF03467 Smg4_UPF3: Smg-4/UPF3 95.7 0.029 6.2E-07 46.8 6.1 78 282-359 7-97 (176)
197 KOG2135 Proteins containing th 95.7 0.0073 1.6E-07 56.2 2.7 75 283-362 373-448 (526)
198 PF07576 BRAP2: BRCA1-associat 95.6 0.14 3E-06 38.8 8.8 75 284-358 15-93 (110)
199 PF07576 BRAP2: BRCA1-associat 95.5 0.11 2.5E-06 39.3 8.1 67 107-175 13-81 (110)
200 PF08675 RNA_bind: RNA binding 95.4 0.074 1.6E-06 37.3 6.1 54 284-344 11-64 (87)
201 KOG2068 MOT2 transcription fac 95.0 0.0077 1.7E-07 53.9 0.4 78 283-360 78-163 (327)
202 PF04147 Nop14: Nop14-like fam 95.0 0.051 1.1E-06 57.0 6.4 14 118-131 426-439 (840)
203 KOG2068 MOT2 transcription fac 94.8 0.015 3.3E-07 52.0 1.7 80 107-186 78-163 (327)
204 KOG2135 Proteins containing th 94.8 0.019 4.1E-07 53.5 2.3 76 105-187 371-447 (526)
205 KOG0804 Cytoplasmic Zn-finger 94.6 0.1 2.2E-06 48.7 6.5 68 282-349 74-142 (493)
206 KOG0804 Cytoplasmic Zn-finger 94.5 0.096 2.1E-06 48.8 6.3 69 105-175 73-142 (493)
207 PF03880 DbpA: DbpA RNA bindin 93.9 0.27 5.9E-06 34.4 6.2 59 292-357 11-74 (74)
208 PF04847 Calcipressin: Calcipr 93.6 0.19 4.2E-06 42.0 5.8 60 119-184 8-69 (184)
209 KOG4285 Mitotic phosphoprotein 93.6 0.19 4.1E-06 44.3 5.9 74 283-362 198-272 (350)
210 KOG2591 c-Mpl binding protein, 93.5 0.29 6.3E-06 46.9 7.4 99 159-265 148-247 (684)
211 KOG2253 U1 snRNP complex, subu 93.2 0.081 1.8E-06 51.7 3.4 71 280-357 38-108 (668)
212 PF05285 SDA1: SDA1; InterPro 92.9 0.12 2.5E-06 47.9 4.0 8 118-125 190-197 (324)
213 KOG4574 RNA-binding protein (c 92.5 0.17 3.8E-06 50.8 4.6 77 284-364 300-378 (1007)
214 KOG4285 Mitotic phosphoprotein 92.4 0.39 8.5E-06 42.4 6.2 64 107-178 198-261 (350)
215 KOG2236 Uncharacterized conser 92.4 3.2 6.9E-05 39.3 12.2 28 202-244 246-273 (483)
216 KOG4574 RNA-binding protein (c 92.3 0.089 1.9E-06 52.8 2.4 72 107-184 299-372 (1007)
217 PRK11634 ATP-dependent RNA hel 91.6 3.3 7.1E-05 42.4 12.7 62 292-360 497-563 (629)
218 KOG2038 CAATT-binding transcri 91.5 0.3 6.5E-06 48.9 4.9 19 109-127 958-976 (988)
219 PF11767 SET_assoc: Histone ly 91.4 1.3 2.9E-05 29.9 6.5 56 292-354 10-65 (66)
220 PF04147 Nop14: Nop14-like fam 91.2 0.3 6.5E-06 51.5 5.0 8 350-357 743-750 (840)
221 KOG4483 Uncharacterized conser 91.1 0.14 2.9E-06 46.9 2.0 55 105-166 390-445 (528)
222 KOG2318 Uncharacterized conser 91.1 1.1 2.4E-05 43.4 8.0 80 280-359 172-307 (650)
223 PF11767 SET_assoc: Histone ly 90.9 1.3 2.8E-05 30.0 6.1 55 117-180 11-65 (66)
224 PF03880 DbpA: DbpA RNA bindin 90.0 1.4 3.1E-05 30.7 6.1 59 116-183 11-74 (74)
225 KOG2253 U1 snRNP complex, subu 89.9 0.19 4.2E-06 49.2 2.1 70 104-182 38-107 (668)
226 PF10567 Nab6_mRNP_bdg: RNA-re 89.4 15 0.00033 32.8 14.9 170 187-358 16-230 (309)
227 PF02724 CDC45: CDC45-like pro 87.7 0.37 8.1E-06 48.9 2.6 13 239-251 400-412 (622)
228 PF07292 NID: Nmi/IFP 35 domai 85.9 3.5 7.6E-05 29.8 5.9 56 151-206 1-72 (88)
229 PF05285 SDA1: SDA1; InterPro 84.9 0.6 1.3E-05 43.2 2.1 7 198-204 231-237 (324)
230 KOG1999 RNA polymerase II tran 84.8 5.4 0.00012 41.5 8.8 17 289-305 446-462 (1024)
231 PF02724 CDC45: CDC45-like pro 84.6 0.69 1.5E-05 47.0 2.6 16 237-252 395-410 (622)
232 KOG2141 Protein involved in hi 84.4 0.94 2E-05 45.2 3.3 25 325-349 624-648 (822)
233 KOG0921 Dosage compensation co 83.5 4.6 0.0001 41.9 7.6 14 227-240 899-912 (1282)
234 COG4547 CobT Cobalamin biosynt 82.4 3.1 6.6E-05 39.4 5.5 17 107-123 317-333 (620)
235 PF07292 NID: Nmi/IFP 35 domai 82.0 1.1 2.4E-05 32.2 2.1 71 233-304 1-74 (88)
236 PF14111 DUF4283: Domain of un 81.5 1.3 2.9E-05 35.9 2.7 96 229-327 54-150 (153)
237 KOG4019 Calcineurin-mediated s 81.5 1.7 3.6E-05 35.6 3.1 76 283-362 11-92 (193)
238 KOG2295 C2H2 Zn-finger protein 81.4 0.3 6.6E-06 46.8 -1.2 72 105-176 230-301 (648)
239 PF03468 XS: XS domain; Inter 80.6 0.91 2E-05 34.9 1.3 52 283-335 9-69 (116)
240 PF12253 CAF1A: Chromatin asse 80.5 1.4 3.1E-05 30.8 2.1 11 12-22 42-52 (77)
241 KOG2891 Surface glycoprotein [ 78.6 0.5 1.1E-05 41.1 -0.7 68 106-173 149-247 (445)
242 TIGR02542 B_forsyth_147 Bacter 78.3 13 0.00028 27.9 6.6 108 113-242 10-131 (145)
243 KOG4410 5-formyltetrahydrofola 77.7 4.9 0.00011 35.4 5.0 49 105-159 329-378 (396)
244 PF10567 Nab6_mRNP_bdg: RNA-re 77.4 5 0.00011 35.7 5.0 80 280-359 13-107 (309)
245 KOG2891 Surface glycoprotein [ 77.1 9.9 0.00022 33.3 6.6 79 282-360 149-268 (445)
246 KOG0526 Nucleosome-binding fac 75.0 1.2 2.6E-05 42.8 0.6 6 114-119 535-540 (615)
247 PF09073 BUD22: BUD22; InterP 74.7 3 6.5E-05 40.5 3.3 23 331-353 408-430 (432)
248 KOG4364 Chromatin assembly fac 74.5 2.1 4.5E-05 42.3 2.2 21 9-29 517-537 (811)
249 PRK14548 50S ribosomal protein 74.5 13 0.00027 26.7 5.6 57 285-342 23-81 (84)
250 TIGR01651 CobT cobaltochelatas 72.5 5.3 0.00012 39.6 4.4 14 106-119 295-308 (600)
251 TIGR03636 L23_arch archaeal ri 72.5 17 0.00036 25.6 5.7 58 284-342 15-74 (77)
252 KOG3168 U1 snRNP component [Tr 72.4 27 0.00058 28.2 7.4 46 284-329 25-72 (177)
253 KOG3973 Uncharacterized conser 72.3 9.1 0.0002 34.8 5.4 15 398-412 376-390 (465)
254 PF07530 PRE_C2HC: Associated 72.1 7.3 0.00016 26.6 3.8 63 121-186 2-65 (68)
255 KOG3130 Uncharacterized conser 71.1 4.3 9.4E-05 37.6 3.2 21 110-130 354-374 (514)
256 KOG4019 Calcineurin-mediated s 70.2 4.1 8.9E-05 33.4 2.6 76 106-187 10-91 (193)
257 KOG2773 Apoptosis antagonizing 70.0 3 6.4E-05 39.4 2.0 10 290-299 389-398 (483)
258 COG4547 CobT Cobalamin biosynt 67.2 6.6 0.00014 37.3 3.6 8 173-180 426-433 (620)
259 COG5593 Nucleic-acid-binding p 67.0 4.3 9.4E-05 39.2 2.4 21 107-127 799-819 (821)
260 KOG4213 RNA-binding protein La 66.6 7.4 0.00016 31.9 3.3 58 106-167 111-169 (205)
261 PF02714 DUF221: Domain of unk 65.2 12 0.00026 34.8 5.1 57 151-209 1-57 (325)
262 PF15513 DUF4651: Domain of un 64.7 15 0.00033 24.4 3.9 22 297-318 9-30 (62)
263 smart00596 PRE_C2HC PRE_C2HC d 64.1 12 0.00026 25.5 3.4 62 121-185 2-64 (69)
264 TIGR00927 2A1904 K+-dependent 63.1 4.6 0.0001 42.3 2.0 10 107-116 905-914 (1096)
265 PF03468 XS: XS domain; Inter 62.9 8.4 0.00018 29.6 2.9 49 108-159 10-67 (116)
266 KOG1295 Nonsense-mediated deca 60.0 13 0.00027 34.6 4.0 65 283-347 8-77 (376)
267 TIGR00927 2A1904 K+-dependent 56.8 7.6 0.00017 40.8 2.3 12 146-157 929-940 (1096)
268 KOG4410 5-formyltetrahydrofola 55.5 8.2 0.00018 34.0 1.9 47 283-333 331-378 (396)
269 PRK14548 50S ribosomal protein 54.6 41 0.00088 24.1 5.0 56 109-167 23-80 (84)
270 PF03896 TRAP_alpha: Transloco 53.1 8.9 0.00019 34.7 1.8 7 107-113 85-91 (285)
271 KOG4008 rRNA processing protei 52.9 10 0.00023 32.5 2.1 37 101-137 35-71 (261)
272 PF09073 BUD22: BUD22; InterP 51.1 24 0.00053 34.3 4.7 7 159-165 321-327 (432)
273 KOG4483 Uncharacterized conser 50.8 1E+02 0.0022 29.0 8.1 54 283-341 392-446 (528)
274 TIGR03636 L23_arch archaeal ri 50.3 56 0.0012 23.0 5.1 56 109-167 16-73 (77)
275 PF03896 TRAP_alpha: Transloco 48.5 12 0.00027 33.7 2.0 15 284-298 193-207 (285)
276 COG5638 Uncharacterized conser 47.3 77 0.0017 29.8 6.8 79 280-358 144-296 (622)
277 PF06495 Transformer: Fruit fl 47.2 40 0.00087 27.6 4.4 24 409-432 145-168 (182)
278 KOG4365 Uncharacterized conser 47.0 2.9 6.4E-05 39.1 -2.1 77 284-361 5-83 (572)
279 PF11823 DUF3343: Protein of u 47.0 93 0.002 21.4 6.1 25 149-173 2-26 (73)
280 PF14111 DUF4283: Domain of un 46.9 14 0.00031 29.7 2.1 95 117-218 28-136 (153)
281 PF05764 YL1: YL1 nuclear prot 45.8 17 0.00037 32.1 2.5 7 293-299 184-190 (240)
282 COG4907 Predicted membrane pro 45.2 51 0.0011 31.6 5.4 13 332-344 525-537 (595)
283 KOG0772 Uncharacterized conser 44.4 19 0.00041 34.9 2.6 19 100-118 173-191 (641)
284 COG5193 LHP1 La protein, small 43.1 12 0.00026 34.9 1.1 61 105-165 173-243 (438)
285 KOG1295 Nonsense-mediated deca 42.4 30 0.00065 32.3 3.5 67 106-172 7-76 (376)
286 KOG4264 Nucleo-cytoplasmic pro 42.1 26 0.00056 34.0 3.1 16 152-167 213-228 (694)
287 KOG2295 C2H2 Zn-finger protein 42.1 4.7 0.0001 39.1 -1.6 66 282-347 231-298 (648)
288 KOG0650 WD40 repeat nucleolar 41.9 55 0.0012 32.6 5.3 12 107-118 119-130 (733)
289 KOG4213 RNA-binding protein La 41.3 37 0.0008 28.0 3.4 62 294-356 118-183 (205)
290 KOG4365 Uncharacterized conser 41.2 4.9 0.00011 37.8 -1.7 77 107-184 4-80 (572)
291 PTZ00191 60S ribosomal protein 39.2 1.1E+02 0.0024 24.5 5.8 56 284-340 83-140 (145)
292 cd04889 ACT_PDH-BS-like C-term 39.1 1E+02 0.0022 19.5 5.1 42 297-339 13-55 (56)
293 PF11823 DUF3343: Protein of u 37.0 43 0.00093 23.1 2.9 28 323-350 2-29 (73)
294 KOG2266 Chromatin-associated p 36.7 35 0.00076 32.8 3.1 10 145-154 243-252 (594)
295 PF14026 DUF4242: Protein of u 36.6 1.5E+02 0.0032 20.8 7.3 61 285-346 3-70 (77)
296 KOG4264 Nucleo-cytoplasmic pro 34.3 37 0.0008 33.0 2.8 8 324-331 443-450 (694)
297 COG4907 Predicted membrane pro 34.1 38 0.00082 32.4 2.8 9 335-343 525-533 (595)
298 PRK11901 hypothetical protein; 33.7 1.3E+02 0.0028 27.7 6.0 68 99-171 238-307 (327)
299 KOG1060 Vesicle coat complex A 33.7 80 0.0017 32.8 5.2 6 152-157 773-778 (968)
300 KOG4008 rRNA processing protei 33.0 39 0.00084 29.2 2.5 35 280-314 38-72 (261)
301 KOG2147 Nucleolar protein invo 31.4 78 0.0017 32.5 4.6 18 114-131 388-409 (823)
302 PF08734 GYD: GYD domain; Int 31.1 2.1E+02 0.0045 20.8 5.9 46 296-343 22-68 (91)
303 PF15063 TC1: Thyroid cancer p 30.7 23 0.00049 24.5 0.6 49 284-342 27-78 (79)
304 PHA03169 hypothetical protein; 30.7 2E+02 0.0044 26.9 6.7 9 203-211 303-311 (413)
305 KOG1980 Uncharacterized conser 30.5 21 0.00046 35.6 0.7 44 122-165 466-511 (754)
306 cd04904 ACT_AAAH ACT domain of 30.0 1.9E+02 0.004 19.9 5.8 50 295-344 13-65 (74)
307 CHL00128 psbW photosystem II p 29.9 78 0.0017 24.0 3.3 29 308-336 14-42 (113)
308 PHA03169 hypothetical protein; 29.9 1.9E+02 0.0042 27.0 6.5 7 331-337 375-381 (413)
309 COG5638 Uncharacterized conser 29.4 1.5E+02 0.0032 28.1 5.7 39 104-142 144-187 (622)
310 cd04908 ACT_Bt0572_1 N-termina 28.4 1.8E+02 0.0039 19.2 8.3 49 295-346 14-63 (66)
311 PF00403 HMA: Heavy-metal-asso 28.4 1.7E+02 0.0037 18.9 5.9 54 284-341 1-58 (62)
312 PF02714 DUF221: Domain of unk 27.1 1.5E+02 0.0032 27.5 5.7 57 233-305 1-57 (325)
313 PRK13610 photosystem II reacti 27.0 92 0.002 23.5 3.3 40 284-337 10-49 (113)
314 PLN00039 photosystem II reacti 26.9 88 0.0019 23.6 3.2 29 308-336 13-41 (111)
315 KOG0156 Cytochrome P450 CYP2 s 26.4 1.1E+02 0.0024 30.4 4.8 60 109-178 35-97 (489)
316 KOG1308 Hsp70-interacting prot 26.0 1.4E+02 0.003 27.8 4.9 20 345-364 245-264 (377)
317 PRK10590 ATP-dependent RNA hel 25.6 6.4E+02 0.014 24.7 11.0 14 238-251 253-266 (456)
318 KOG3540 Beta amyloid precursor 25.3 65 0.0014 31.1 2.8 17 111-129 280-296 (615)
319 cd04882 ACT_Bt0572_2 C-termina 25.1 2E+02 0.0043 18.6 5.8 48 297-345 14-62 (65)
320 KOG2375 Protein interacting wi 24.9 2E+02 0.0042 30.0 6.2 10 152-161 296-305 (756)
321 PF04026 SpoVG: SpoVG; InterP 24.5 1.5E+02 0.0032 21.3 3.9 26 132-157 2-27 (84)
322 PRK13612 photosystem II reacti 24.4 88 0.0019 23.7 2.8 29 308-336 16-44 (113)
323 COG5213 FIP1 Polyadenylation f 24.0 3E+02 0.0065 23.7 6.1 6 324-329 144-149 (266)
324 KOG2187 tRNA uracil-5-methyltr 24.0 84 0.0018 30.9 3.3 43 322-364 63-105 (534)
325 KOG0338 ATP-dependent RNA heli 23.7 37 0.0008 33.2 0.9 15 151-165 255-269 (691)
326 PF11702 DUF3295: Protein of u 23.1 54 0.0012 32.1 1.9 9 44-52 307-315 (507)
327 COG5193 LHP1 La protein, small 22.8 38 0.00082 31.8 0.8 58 283-340 175-244 (438)
328 PRK01178 rps24e 30S ribosomal 22.7 2.1E+02 0.0045 21.3 4.5 46 117-163 30-80 (99)
329 KOG0156 Cytochrome P450 CYP2 s 22.7 1.8E+02 0.004 28.8 5.6 59 286-352 36-97 (489)
330 PRK11901 hypothetical protein; 22.1 1.6E+02 0.0035 27.1 4.5 58 283-344 246-306 (327)
331 PF03439 Spt5-NGN: Early trans 20.6 2.9E+02 0.0064 19.6 4.9 36 308-346 33-68 (84)
332 KOG2147 Nucleolar protein invo 20.4 59 0.0013 33.3 1.6 31 331-362 694-724 (823)
333 KOG3168 U1 snRNP component [Tr 20.3 3.4E+02 0.0073 22.2 5.4 7 424-430 166-172 (177)
No 1
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=6.6e-56 Score=390.84 Aligned_cols=327 Identities=40% Similarity=0.695 Sum_probs=277.7
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccC-CeEEEEe
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCS 181 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~-g~~i~v~ 181 (437)
++.+|.|||+.||.++.|++|..+|.+.|+|-.++|++++.+|.+||||||.|.+.+.|+.|++.||+..|. |+.|.|.
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc 159 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVC 159 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEE
Confidence 467899999999999999999999999999999999999999999999999999999999999999999885 9999999
Q ss_pred eccccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCC
Q 013716 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (437)
Q Consensus 182 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 261 (437)
.+..++.|||+|+|+.+++++|++.|++.++.|..|.+...|.+..++||||||.|.++.+|..|.++|....+.+.+..
T Consensus 160 ~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~ 239 (506)
T KOG0117|consen 160 VSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNA 239 (506)
T ss_pred EeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHh
Q 013716 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (437)
Q Consensus 262 ~~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~ 341 (437)
+.|.||.|....... ...+.+.|||+||+.++|++.|+++|++||.|.+|+.+++ ||||.|.+.++|.+|++.
T Consensus 240 ~tVdWAep~~e~ded-~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD------YaFVHf~eR~davkAm~~ 312 (506)
T KOG0117|consen 240 ITVDWAEPEEEPDED-TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD------YAFVHFAEREDAVKAMKE 312 (506)
T ss_pred ceeeccCcccCCChh-hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc------eeEEeecchHHHHHHHHH
Confidence 999999999988776 4477899999999999999999999999999999998855 899999999999999999
Q ss_pred cCCceeCCeEEEEEeccCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 013716 342 TEKYEIDGQVLEVVLAKPQTDKKTEGTFPYSPGLVPTHLPH--AGYGGFAGTPYGSVGTGFGVAAGFQQPMIYGRGPMPS 419 (437)
Q Consensus 342 l~g~~i~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~g~~~~g~~~~~~~~~~~~~g~~~~p~ 419 (437)
+||..|+|..|.|.+|+|...++..+....+++..+.+.+. +..+..+..++|..++|++....+.+|+.|+++.+|.
T Consensus 313 ~ngkeldG~~iEvtLAKP~~k~k~~r~~~~~g~~~~~~~~~~~p~~~~~~~~~~g~~~~g~~~~~y~~~P~~y~~~~~~~ 392 (506)
T KOG0117|consen 313 TNGKELDGSPIEVTLAKPVDKKKKERKAMRQGGAYPTYYYFGPPVFYAIPPAPRGAGRGGGSRAGYYSQPGMYGTGHAPG 392 (506)
T ss_pred hcCceecCceEEEEecCChhhhccchhhhhccccCCCccccCCcccCCCCCCCcCcccCCCCccccccCCccccCccccc
Confidence 99999999999999999988776553222222221221111 1111111122222222222334455666777777776
Q ss_pred ----CCccCCccCC---CCc-cccc
Q 013716 420 ----GMHMVPMVLP---DGQ-IGYV 436 (437)
Q Consensus 420 ----~~~~~p~~~p---~~~-~~~~ 436 (437)
+|+|+|+++| .++ +||+
T Consensus 393 ~~~~~m~~~~~~l~~~~~~~~~g~~ 417 (506)
T KOG0117|consen 393 LKGYGMHMAPGGLEYIGYGRNWGYV 417 (506)
T ss_pred cccCCcccccccccccccCCCcchh
Confidence 8888888887 555 5554
No 2
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=1.1e-46 Score=360.88 Aligned_cols=252 Identities=35% Similarity=0.645 Sum_probs=226.5
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccC-CeEEEEee
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKTIRCSL 182 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~-g~~i~v~~ 182 (437)
...++|||+|||+++++++|+++|++||.|.+|+|+++ .+|+++|||||+|.+.++|++||+.||+..+. |+.|.|..
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 35689999999999999999999999999999999999 67999999999999999999999999999885 89999999
Q ss_pred ccccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCC
Q 013716 183 SETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP 262 (437)
Q Consensus 183 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~ 262 (437)
+..+++|||+|||..+++++|.+.|+.++..+..+.+...+...+++++||||+|.+.++|..|++.+....+.+.++.+
T Consensus 135 S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I 214 (578)
T TIGR01648 135 SVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVI 214 (578)
T ss_pred cccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceE
Confidence 99999999999999999999999999998656666665555566788999999999999999999999887788899999
Q ss_pred eeeecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhcc--CCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHH
Q 013716 263 TISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340 (437)
Q Consensus 263 ~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~--G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~ 340 (437)
.|.|+.+........ ....++|||+||++.+++++|+++|++| |.|.+|.+++ +||||+|.+.++|.+|+.
T Consensus 215 ~VdwA~p~~~~d~~~-~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r------gfAFVeF~s~e~A~kAi~ 287 (578)
T TIGR01648 215 AVDWAEPEEEVDEDV-MAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR------DYAFVHFEDREDAVKAMD 287 (578)
T ss_pred EEEeecccccccccc-cccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec------CeEEEEeCCHHHHHHHHH
Confidence 999998876443222 2345789999999999999999999999 9999998753 699999999999999999
Q ss_pred hcCCceeCCeEEEEEeccCCCCC
Q 013716 341 DTEKYEIDGQVLEVVLAKPQTDK 363 (437)
Q Consensus 341 ~l~g~~i~g~~l~v~~a~~~~~~ 363 (437)
.||+..|.|+.|+|.|+++....
T Consensus 288 ~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 288 ELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred HhCCCEECCEEEEEEEccCCCcc
Confidence 99999999999999999886543
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=3.4e-46 Score=352.07 Aligned_cols=256 Identities=22% Similarity=0.414 Sum_probs=223.9
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
..++|||+|||+.+|+++|+++|+.||+|..|+|++++.+|+++|||||+|.+.++|.+||+.|++..|.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred c------cccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccC
Q 013716 185 T------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLD 258 (437)
Q Consensus 185 ~------~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~ 258 (437)
+ .++|||+|||..+++++|+.+|+.||. |..+.++.+ ..++.+++||||+|.+.++|..|++.|++..+...
T Consensus 82 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~-i~~~~~~~~-~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~ 159 (352)
T TIGR01661 82 PSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQ-IITSRILSD-NVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC 159 (352)
T ss_pred ccccccccceEEECCccccCCHHHHHHHHhccCC-EEEEEEEec-CCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 4 357999999999999999999999998 888998887 35678999999999999999999999998755544
Q ss_pred CCCCeeeecCCCCCCCC---------------------------------------------------------------
Q 013716 259 GNTPTISWADPKSTPDH--------------------------------------------------------------- 275 (437)
Q Consensus 259 ~~~~~v~~~~~~~~~~~--------------------------------------------------------------- 275 (437)
...+.+.|+........
T Consensus 160 ~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (352)
T TIGR01661 160 TEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQH 239 (352)
T ss_pred ceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccccc
Confidence 56677777643321000
Q ss_pred -----------------------cccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCC-C-ccEEEEEeC
Q 013716 276 -----------------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYA 330 (437)
Q Consensus 276 -----------------------~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-~g~afV~f~ 330 (437)
......+.+|||+|||+.+++++|+++|++||.|..|+|+++..+ . ||||||+|.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~ 319 (352)
T TIGR01661 240 AAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMT 319 (352)
T ss_pred ccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEEC
Confidence 000011236999999999999999999999999999999988743 3 999999999
Q ss_pred CHHHHHHHHHhcCCceeCCeEEEEEeccCCCC
Q 013716 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (437)
Q Consensus 331 ~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~ 362 (437)
+.++|.+||..|||..|+||.|+|.|+..+..
T Consensus 320 ~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~~ 351 (352)
T TIGR01661 320 NYDEAAMAILSLNGYTLGNRVLQVSFKTNKAY 351 (352)
T ss_pred CHHHHHHHHHHhCCCEECCeEEEEEEccCCCC
Confidence 99999999999999999999999999987643
No 4
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=2.4e-44 Score=358.41 Aligned_cols=252 Identities=29% Similarity=0.519 Sum_probs=221.3
Q ss_pred eEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecccc-
Q 013716 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK- 186 (437)
Q Consensus 108 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~- 186 (437)
+|||+|||+++|+++|+++|+.||.|.+|+|+++..|++++|||||+|.+.++|.+|+..|++..+.|+.|+|.++...
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999775310
Q ss_pred --------------------------------------------------------------------------------
Q 013716 187 -------------------------------------------------------------------------------- 186 (437)
Q Consensus 187 -------------------------------------------------------------------------------- 186 (437)
T Consensus 82 ~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v 161 (562)
T TIGR01628 82 SLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYV 161 (562)
T ss_pred cccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEE
Confidence
Q ss_pred -----------------ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHH
Q 013716 187 -----------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQK 249 (437)
Q Consensus 187 -----------------~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~ 249 (437)
++|||+||+..+++++|+++|+.||. |..+.++++ ..++++|||||.|.+.++|.+|+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~-i~~~~i~~~--~~g~~~G~afV~F~~~e~A~~Av~~ 238 (562)
T TIGR01628 162 GRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGE-ITSAAVMKD--GSGRSRGFAFVNFEKHEDAAKAVEE 238 (562)
T ss_pred eccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCC-EEEEEEEEC--CCCCcccEEEEEECCHHHHHHHHHH
Confidence 23889999999999999999999998 899999887 4578899999999999999999999
Q ss_pred HhccCcccC--CCCCeeeecCCCCCCCC------------cccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeC
Q 013716 250 MLNANFKLD--GNTPTISWADPKSTPDH------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP 315 (437)
Q Consensus 250 ~~~~~~~~~--~~~~~v~~~~~~~~~~~------------~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~ 315 (437)
+++..+... ++.+.+.++..+..... ........+|||+||+..+++++|+++|++||.|..|+|+
T Consensus 239 l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~ 318 (562)
T TIGR01628 239 MNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVM 318 (562)
T ss_pred hCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEE
Confidence 987644311 77888887766543210 1112345789999999999999999999999999999999
Q ss_pred CCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCCCC
Q 013716 316 PGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (437)
Q Consensus 316 ~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~ 362 (437)
.+..+. +|||||+|.+.++|.+|+..|||..|+|++|.|.+|..+..
T Consensus 319 ~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~ 366 (562)
T TIGR01628 319 LDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQ 366 (562)
T ss_pred ECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHH
Confidence 887666 99999999999999999999999999999999999987654
No 5
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.6e-43 Score=290.99 Aligned_cols=254 Identities=23% Similarity=0.409 Sum_probs=227.8
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
..+.|.|.-||..+|+++|+.+|...|.|++|++++|+.+|.+.||+||.|-++++|++|+..|||..+..++|+|.+++
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 44679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc------ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccC
Q 013716 185 TK------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLD 258 (437)
Q Consensus 185 ~~------~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~ 258 (437)
+. .+|||.+||+.+|..+|..+|++||. |..-+|+.| +.++.++|.+||.|.....|..|++.+++....-.
T Consensus 120 PSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGr-IItSRiL~d-qvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~ 197 (360)
T KOG0145|consen 120 PSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGR-IITSRILVD-QVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGC 197 (360)
T ss_pred CChhhhcccceEEecCCccchHHHHHHHHHHhhh-hhhhhhhhh-cccceecceeEEEecchhHHHHHHHhccCCCCCCC
Confidence 86 57999999999999999999999998 666677777 57799999999999999999999999999876666
Q ss_pred CCCCeeeecCCCCCCCCc---------------------------------------------------------ccccC
Q 013716 259 GNTPTISWADPKSTPDHS---------------------------------------------------------AAASQ 281 (437)
Q Consensus 259 ~~~~~v~~~~~~~~~~~~---------------------------------------------------------~~~~~ 281 (437)
.-+|.|+++......... .....
T Consensus 198 tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~ 277 (360)
T KOG0145|consen 198 TEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGG 277 (360)
T ss_pred CCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCC
Confidence 678888887655321100 00011
Q ss_pred cceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 282 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
..||||.||..+.++.-|+++|.+||.|..|+|+++..+. ||||||.+.+.++|..||..|||..+++|.|.|+|...
T Consensus 278 g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 278 GWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred eeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 5899999999999999999999999999999999998865 99999999999999999999999999999999999865
Q ss_pred C
Q 013716 360 Q 360 (437)
Q Consensus 360 ~ 360 (437)
+
T Consensus 358 k 358 (360)
T KOG0145|consen 358 K 358 (360)
T ss_pred C
Confidence 4
No 6
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.2e-40 Score=272.09 Aligned_cols=227 Identities=21% Similarity=0.398 Sum_probs=190.7
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHH-HhCCCccCCeEEEEeec
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID-ELHSKELKGKTIRCSLS 183 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~-~l~~~~~~g~~i~v~~~ 183 (437)
..+||||+||...+|++-|..||.+.|.|..++++.+.- + | ..|.. ....+....+
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~-~-------v--------~wa~~p~nQsk~t~~~------- 61 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDEL-K-------V--------NWATAPGNQSKPTSNQ------- 61 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehhhh-c-------c--------ccccCcccCCCCcccc-------
Confidence 568999999999999999999999999999999987621 0 0 00000 1111111111
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCe
Q 013716 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (437)
Q Consensus 184 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 263 (437)
.--+||+.|...++.+.|++.|.+||+ |..+++++| ..+++++||+||.|-+..+|+.|+..|+++ .+++|.|+
T Consensus 62 --hfhvfvgdls~eI~~e~lr~aF~pFGe-vS~akvirD-~~T~KsKGYgFVSf~~k~dAEnAI~~MnGq--WlG~R~IR 135 (321)
T KOG0148|consen 62 --HFHVFVGDLSPEIDNEKLREAFAPFGE-VSDAKVIRD-MNTGKSKGYGFVSFPNKEDAENAIQQMNGQ--WLGRRTIR 135 (321)
T ss_pred --ceeEEehhcchhcchHHHHHHhccccc-cccceEeec-ccCCcccceeEEeccchHHHHHHHHHhCCe--eeccceee
Confidence 234789999999999999999999999 999999999 588999999999999999999999999887 78999999
Q ss_pred eeecCCCCCCCC----------cccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHH
Q 013716 264 ISWADPKSTPDH----------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERS 333 (437)
Q Consensus 264 v~~~~~~~~~~~----------~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~ 333 (437)
.+|+..+..... .......++|||+||+..+|+++|++.|++||.|..|+|++++ |||||.|.+++
T Consensus 136 TNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q----GYaFVrF~tkE 211 (321)
T KOG0148|consen 136 TNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ----GYAFVRFETKE 211 (321)
T ss_pred ccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc----ceEEEEecchh
Confidence 999988753211 1122446899999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHhcCCceeCCeEEEEEeccCCCCCC
Q 013716 334 SALKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364 (437)
Q Consensus 334 ~A~~A~~~l~g~~i~g~~l~v~~a~~~~~~~ 364 (437)
+|.+||..+|+..|.|+.++|.|.+......
T Consensus 212 aAahAIv~mNntei~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 212 AAAHAIVQMNNTEIGGQLVRCSWGKEGDDGI 242 (321)
T ss_pred hHHHHHHHhcCceeCceEEEEeccccCCCCC
Confidence 9999999999999999999999998665443
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=6.5e-38 Score=304.08 Aligned_cols=242 Identities=22% Similarity=0.265 Sum_probs=205.1
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHh--CCCccCCeEEEEee
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL--HSKELKGKTIRCSL 182 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l--~~~~~~g~~i~v~~ 182 (437)
++++|||+|||+++|+++|+++|++||.|..|+++++ +|||||+|.+.++|.+|++.+ ++..+.|+.|.|.+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 3689999999999999999999999999999999753 579999999999999999864 67889999999998
Q ss_pred cccc------------------ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHH
Q 013716 183 SETK------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244 (437)
Q Consensus 183 ~~~~------------------~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~ 244 (437)
+..+ ..|||.||++.++++.|+++|+.||. |..+.++++. .+++|||+|.+.++|.
T Consensus 75 s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~-V~~v~i~~~~-----~~~~afVef~~~~~A~ 148 (481)
T TIGR01649 75 STSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGK-VLRIVTFTKN-----NVFQALVEFESVNSAQ 148 (481)
T ss_pred cCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCC-EEEEEEEecC-----CceEEEEEECCHHHHH
Confidence 7421 15899999999999999999999998 9999888752 2468999999999999
Q ss_pred HHHHHHhccCcccCCCCCeeeecCCCCC-------C-------------C----------Cc------------------
Q 013716 245 YSRQKMLNANFKLDGNTPTISWADPKST-------P-------------D----------HS------------------ 276 (437)
Q Consensus 245 ~a~~~~~~~~~~~~~~~~~v~~~~~~~~-------~-------------~----------~~------------------ 276 (437)
+|+..|++..+.-.++.+.+.|+.+..- . . ..
T Consensus 149 ~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 228 (481)
T TIGR01649 149 HAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSH 228 (481)
T ss_pred HHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccC
Confidence 9999999986654455666666543210 0 0 00
Q ss_pred -----------------------------------------ccccCcceEEEecCCC-CCCHHHHHHHHhccCCeeEEEe
Q 013716 277 -----------------------------------------AAASQVKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVM 314 (437)
Q Consensus 277 -----------------------------------------~~~~~~~~l~V~nLp~-~~t~~~L~~~f~~~G~v~~v~i 314 (437)
....++++|||+||++ .+|+++|+++|+.||.|.+|+|
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki 308 (481)
T TIGR01649 229 GGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKF 308 (481)
T ss_pred CCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEE
Confidence 0012457999999997 6999999999999999999999
Q ss_pred CCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCCC
Q 013716 315 PPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (437)
Q Consensus 315 ~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 361 (437)
++++ +|||||+|.+.++|.+||..|||..|.|++|+|.+++...
T Consensus 309 ~~~~---~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 309 MKNK---KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQN 352 (481)
T ss_pred EeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccc
Confidence 8864 5899999999999999999999999999999999987654
No 8
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=2.7e-37 Score=301.29 Aligned_cols=251 Identities=25% Similarity=0.417 Sum_probs=215.9
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|| .|++..|.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al-~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKAL-ALTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHH-HhCCCEECCeeeEEee
Confidence 346789999999999999999999999999999999999999999999999999999999999 5899999999999987
Q ss_pred ccc------------------cccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHH
Q 013716 183 SET------------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244 (437)
Q Consensus 183 ~~~------------------~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~ 244 (437)
+.. .++|||+|||..+++++|+++|+.||. |..+.++.++ .++.+++||||+|.+.++|.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~-i~~v~~~~d~-~~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 165 SQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGD-IEDVQLHRDP-ETGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred cchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCC-eEEEEEEEcC-CCCccceEEEEEECCHHHHH
Confidence 532 267999999999999999999999998 9999999984 56789999999999999999
Q ss_pred HHHHHHhccCcccCCCCCeeeecCCCCCC-----------------------------------C---------------
Q 013716 245 YSRQKMLNANFKLDGNTPTISWADPKSTP-----------------------------------D--------------- 274 (437)
Q Consensus 245 ~a~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------------------------~--------------- 274 (437)
.|+..|++ +.+.++.+.|.|+...... .
T Consensus 243 ~A~~~l~g--~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (457)
T TIGR01622 243 EALEVMNG--FELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIA 320 (457)
T ss_pred HHHHhcCC--cEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhh
Confidence 99999987 5778999999985321000 0
Q ss_pred ----------------------------------CcccccCcceEEEecCCCCCC----------HHHHHHHHhccCCee
Q 013716 275 ----------------------------------HSAAASQVKALYVKNIPDNTS----------TEKIKELFQRHGEVT 310 (437)
Q Consensus 275 ----------------------------------~~~~~~~~~~l~V~nLp~~~t----------~~~L~~~f~~~G~v~ 310 (437)
........++|+|.||....+ .++|++.|++||.|.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~ 400 (457)
T TIGR01622 321 LMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVV 400 (457)
T ss_pred hhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCee
Confidence 000113457899999965544 268999999999999
Q ss_pred EEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCC
Q 013716 311 KVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (437)
Q Consensus 311 ~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (437)
.|.|.... ..|++||+|.++++|.+|+..|||+.|+|+.|.|.|....
T Consensus 401 ~v~v~~~~--~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 401 HIYVDTKN--SAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred EEEEeCCC--CceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 99997443 2589999999999999999999999999999999998643
No 9
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=5.8e-37 Score=277.24 Aligned_cols=252 Identities=25% Similarity=0.482 Sum_probs=221.9
Q ss_pred CCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 013716 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (437)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 185 (437)
+.||||++||++++.++|.++|+.+|+|..+.++.+..++.++||+||.|.-.++++.|++.+++..|.|+.|.|..+..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999988763
Q ss_pred c--------------------------------ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEE
Q 013716 186 K--------------------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFS 233 (437)
Q Consensus 186 ~--------------------------------~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~ 233 (437)
. -.|.|+|||+.+...+|+.+|+.||. |..|.|.+. ..++-.|||
T Consensus 85 R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~-V~Ei~IP~k--~dgklcGFa 161 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGK-VVEIVIPRK--KDGKLCGFA 161 (678)
T ss_pred cccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcce-EEEEEcccC--CCCCccceE
Confidence 2 35899999999999999999999998 999999875 445555999
Q ss_pred EEEecChHHHHHHHHHHhccCcccCCCCCeeeecCCCCCCCCcc------------------------------------
Q 013716 234 FVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSA------------------------------------ 277 (437)
Q Consensus 234 fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------------------------------------ 277 (437)
||.|....+|..|+..+++. .+.|+++.|.||.++.......
T Consensus 162 FV~fk~~~dA~~Al~~~N~~--~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~ 239 (678)
T KOG0127|consen 162 FVQFKEKKDAEKALEFFNGN--KIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDS 239 (678)
T ss_pred EEEEeeHHHHHHHHHhccCc--eecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccc
Confidence 99999999999999999876 8899999999998873221100
Q ss_pred ------------------------------------------------cccCcceEEEecCCCCCCHHHHHHHHhccCCe
Q 013716 278 ------------------------------------------------AASQVKALYVKNIPDNTSTEKIKELFQRHGEV 309 (437)
Q Consensus 278 ------------------------------------------------~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v 309 (437)
......+|||+|||+++|+++|.++|++||.|
T Consensus 240 edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v 319 (678)
T KOG0127|consen 240 EDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEV 319 (678)
T ss_pred cccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccc
Confidence 00003789999999999999999999999999
Q ss_pred eEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcC-----C-ceeCCeEEEEEeccCCCC
Q 013716 310 TKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTE-----K-YEIDGQVLEVVLAKPQTD 362 (437)
Q Consensus 310 ~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~-----g-~~i~g~~l~v~~a~~~~~ 362 (437)
..+.|+.++.+. +|.|||.|.+..+|..||.... | ..|.||.|.|..|..+..
T Consensus 320 ~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 320 KYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTRKE 380 (678)
T ss_pred eeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccchHH
Confidence 999999888766 9999999999999999999872 4 689999999999876543
No 10
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=3.4e-36 Score=297.72 Aligned_cols=245 Identities=22% Similarity=0.385 Sum_probs=202.4
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhccc------------CCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCC
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPI------------GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK 171 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~------------G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~ 171 (437)
...++|||+|||+.+|+++|+++|..| +.|..+.+ +..+|||||+|.+.++|..|| .|++.
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al-~l~g~ 245 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAM-ALDSI 245 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhh-cCCCe
Confidence 457899999999999999999999875 24444544 456899999999999999999 69999
Q ss_pred ccCCeEEEEeecc-----------------------------------ccccccccCCCCCCCHHHHHHHHHhhCCceeE
Q 013716 172 ELKGKTIRCSLSE-----------------------------------TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVET 216 (437)
Q Consensus 172 ~~~g~~i~v~~~~-----------------------------------~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~ 216 (437)
.|.|+.|.|.... ..++|||+|||..+++++|+++|+.||. |..
T Consensus 246 ~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~-i~~ 324 (509)
T TIGR01642 246 IYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGD-LKA 324 (509)
T ss_pred EeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC-eeE
Confidence 9999999986321 1257999999999999999999999998 999
Q ss_pred EEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCeeeecCCCCCCCC---------------------
Q 013716 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH--------------------- 275 (437)
Q Consensus 217 ~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------------------- 275 (437)
+.+++++ .++.++|||||+|.+..+|..|+..|++. .+.++.+.|.++........
T Consensus 325 ~~~~~~~-~~g~~~g~afv~f~~~~~a~~A~~~l~g~--~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (509)
T TIGR01642 325 FNLIKDI-ATGLSKGYAFCEYKDPSVTDVAIAALNGK--DTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSI 401 (509)
T ss_pred EEEEecC-CCCCcCeEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEECccCCCCCCccccccccccccccccchhhh
Confidence 9999984 67889999999999999999999999765 67788888888754321110
Q ss_pred -cccccCcceEEEecCCCCC----------CHHHHHHHHhccCCeeEEEeCCCCC----CC-ccEEEEEeCCHHHHHHHH
Q 013716 276 -SAAASQVKALYVKNIPDNT----------STEKIKELFQRHGEVTKVVMPPGKS----GK-RDFGFIHYAERSSALKAV 339 (437)
Q Consensus 276 -~~~~~~~~~l~V~nLp~~~----------t~~~L~~~f~~~G~v~~v~i~~~~~----~~-~g~afV~f~~~~~A~~A~ 339 (437)
.....++.+|+|.||.... ..++|+++|++||.|..|.|++... +. +|+|||+|.+.++|.+|+
T Consensus 402 ~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~ 481 (509)
T TIGR01642 402 LQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAM 481 (509)
T ss_pred ccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHH
Confidence 0011245789999996421 1267999999999999999987532 12 689999999999999999
Q ss_pred HhcCCceeCCeEEEEEeccC
Q 013716 340 KDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 340 ~~l~g~~i~g~~l~v~~a~~ 359 (437)
..|||..|+|+.|.|.|...
T Consensus 482 ~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 482 EGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HHcCCCEECCeEEEEEEeCH
Confidence 99999999999999999754
No 11
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=8.1e-36 Score=289.47 Aligned_cols=242 Identities=17% Similarity=0.258 Sum_probs=205.2
Q ss_pred CCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCC--eEEEEeec
Q 013716 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG--KTIRCSLS 183 (437)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g--~~i~v~~~ 183 (437)
-.+|||+||++.+|+++|+++|+.||.|..|.|.++.. +++|||+|.+.++|.+|++.|||..|.+ +.|+|.++
T Consensus 96 ~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~s 171 (481)
T TIGR01649 96 VLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYA 171 (481)
T ss_pred eEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEe
Confidence 35799999999999999999999999999999987542 4689999999999999999999999864 46666553
Q ss_pred c-------------------------------------------------------------------------------
Q 013716 184 E------------------------------------------------------------------------------- 184 (437)
Q Consensus 184 ~------------------------------------------------------------------------------- 184 (437)
+
T Consensus 172 k~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (481)
T TIGR01649 172 KPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRY 251 (481)
T ss_pred cCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCC
Confidence 3
Q ss_pred ----------------------ccccccccCCCC-CCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChH
Q 013716 185 ----------------------TKNRLFIGNVPK-NWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNA 241 (437)
Q Consensus 185 ----------------------~~~~l~v~nl~~-~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~ 241 (437)
+.++|||+||+. .+++++|+++|+.||. |..+.++++ .++||||+|.+.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~-V~~vki~~~------~~g~afV~f~~~~ 324 (481)
T TIGR01649 252 RPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGN-VERVKFMKN------KKETALIEMADPY 324 (481)
T ss_pred cccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCC-eEEEEEEeC------CCCEEEEEECCHH
Confidence 123799999998 6999999999999998 999999886 3689999999999
Q ss_pred HHHHHHHHHhccCcccCCCCCeeeecCCCCCCCC-------------------------c------ccccCcceEEEecC
Q 013716 242 CADYSRQKMLNANFKLDGNTPTISWADPKSTPDH-------------------------S------AAASQVKALYVKNI 290 (437)
Q Consensus 242 ~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------------------------~------~~~~~~~~l~V~nL 290 (437)
+|..|+..|++. .+.|+.+.|.++........ . ....++.+|||+||
T Consensus 325 ~A~~Ai~~lng~--~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NL 402 (481)
T TIGR01649 325 QAQLALTHLNGV--KLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNI 402 (481)
T ss_pred HHHHHHHHhCCC--EECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecC
Confidence 999999999876 66889999988754321000 0 00124578999999
Q ss_pred CCCCCHHHHHHHHhccCC--eeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeE------EEEEeccCC
Q 013716 291 PDNTSTEKIKELFQRHGE--VTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQV------LEVVLAKPQ 360 (437)
Q Consensus 291 p~~~t~~~L~~~f~~~G~--v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~------l~v~~a~~~ 360 (437)
|..+++++|+++|+.||. |..|++.....+++++|||+|.+.++|.+||..||++.|.++. |+|+|++++
T Consensus 403 p~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 403 PLSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred CCCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 999999999999999998 8899987766556899999999999999999999999999985 999999764
No 12
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=3.7e-35 Score=268.67 Aligned_cols=172 Identities=25% Similarity=0.465 Sum_probs=151.8
Q ss_pred CCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEe
Q 013716 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (437)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 181 (437)
.....++|||+|||+++|+++|+++|..||.|..|+|+++..+++++|||||+|.+.++|.+||+.|++..|.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 33467899999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred eccccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCC
Q 013716 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (437)
Q Consensus 182 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 261 (437)
++.+...
T Consensus 183 ~a~p~~~------------------------------------------------------------------------- 189 (346)
T TIGR01659 183 YARPGGE------------------------------------------------------------------------- 189 (346)
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 7642100
Q ss_pred CeeeecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCC-C-ccEEEEEeCCHHHHHHHH
Q 013716 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAV 339 (437)
Q Consensus 262 ~~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-~g~afV~f~~~~~A~~A~ 339 (437)
....++|||+|||+.+|+++|+++|++||.|..|+|++++.+ + ||||||+|.+.++|.+||
T Consensus 190 -----------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai 252 (346)
T TIGR01659 190 -----------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAI 252 (346)
T ss_pred -----------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHH
Confidence 001147999999999999999999999999999999988743 3 899999999999999999
Q ss_pred HhcCCceeCC--eEEEEEeccCCCCC
Q 013716 340 KDTEKYEIDG--QVLEVVLAKPQTDK 363 (437)
Q Consensus 340 ~~l~g~~i~g--~~l~v~~a~~~~~~ 363 (437)
..||+..|.+ ++|+|.++......
T Consensus 253 ~~lng~~~~g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 253 SALNNVIPEGGSQPLTVRLAEEHGKA 278 (346)
T ss_pred HHhCCCccCCCceeEEEEECCccccc
Confidence 9999998876 79999999866443
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=8.7e-35 Score=279.25 Aligned_cols=162 Identities=22% Similarity=0.440 Sum_probs=147.6
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
...++|||+|||+++++++|+++|.+||.|.+|+|++++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred cc-----------------cccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHH
Q 013716 184 ET-----------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYS 246 (437)
Q Consensus 184 ~~-----------------~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a 246 (437)
.. .++|||+||+..+++++|+++|+.||. |..+++.+++ .+++++|||||.|.+.++|.+|
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~-I~svrl~~D~-~tgksKGfGFVeFe~~e~A~kA 262 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE-IVKCQLARAP-TGRGHKGYGFIEYNNLQSQSEA 262 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCC-eeEEEEEecC-CCCCcCCeEEEEECCHHHHHHH
Confidence 31 258999999999999999999999998 9999999984 5688999999999999999999
Q ss_pred HHHHhccCcccCCCCCeeeecCC
Q 013716 247 RQKMLNANFKLDGNTPTISWADP 269 (437)
Q Consensus 247 ~~~~~~~~~~~~~~~~~v~~~~~ 269 (437)
+..|++. .++|+.++|.++.+
T Consensus 263 I~amNg~--elgGr~LrV~kAi~ 283 (612)
T TIGR01645 263 IASMNLF--DLGGQYLRVGKCVT 283 (612)
T ss_pred HHHhCCC--eeCCeEEEEEecCC
Confidence 9999864 66777777776553
No 14
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=3.7e-36 Score=264.80 Aligned_cols=252 Identities=27% Similarity=0.528 Sum_probs=220.3
Q ss_pred CeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCc-cCC--eEEEEeec
Q 013716 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE-LKG--KTIRCSLS 183 (437)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~-~~g--~~i~v~~~ 183 (437)
-.+||+-||..++|.+|+.+|++||.|.+|.|++|+.|+.++|||||.|.+.++|.+|+.+||+.. |.| ..|.|+++
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~A 114 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYA 114 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeeccc
Confidence 459999999999999999999999999999999999999999999999999999999999999875 433 67888887
Q ss_pred cc-------cccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcc
Q 013716 184 ET-------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK 256 (437)
Q Consensus 184 ~~-------~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~ 256 (437)
.. .++|||+-|++.+++.+++++|++||. |+.|.|+++ ..+.+|||+||.|.+.+.|..|++.|++.. .
T Consensus 115 d~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~-Ied~~ilrd--~~~~sRGcaFV~fstke~A~~Aika~ng~~-t 190 (510)
T KOG0144|consen 115 DGERERIVEERKLFVGMLSKQCTENEVREIFSRFGH-IEDCYILRD--PDGLSRGCAFVKFSTKEMAVAAIKALNGTQ-T 190 (510)
T ss_pred chhhhccccchhhhhhhccccccHHHHHHHHHhhCc-cchhhheec--ccccccceeEEEEehHHHHHHHHHhhccce-e
Confidence 63 468899999999999999999999998 999999998 458899999999999999999999998753 3
Q ss_pred cC--CCCCeeeecCCCCCCCCccc--------------------------------------------------------
Q 013716 257 LD--GNTPTISWADPKSTPDHSAA-------------------------------------------------------- 278 (437)
Q Consensus 257 ~~--~~~~~v~~~~~~~~~~~~~~-------------------------------------------------------- 278 (437)
+. ..++.|+|+.+...+.....
T Consensus 191 meGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~ 270 (510)
T KOG0144|consen 191 MEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLN 270 (510)
T ss_pred eccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcc
Confidence 33 35778899887722110000
Q ss_pred -------------------------c------------------------------------------------------
Q 013716 279 -------------------------A------------------------------------------------------ 279 (437)
Q Consensus 279 -------------------------~------------------------------------------------------ 279 (437)
.
T Consensus 271 a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~ 350 (510)
T KOG0144|consen 271 ATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGG 350 (510)
T ss_pred hhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhcccccc
Confidence 0
Q ss_pred -----------------------------------------------------------------------cCcceEEEe
Q 013716 280 -----------------------------------------------------------------------SQVKALYVK 288 (437)
Q Consensus 280 -----------------------------------------------------------------------~~~~~l~V~ 288 (437)
..+..|||.
T Consensus 351 ~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiy 430 (510)
T KOG0144|consen 351 MAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIY 430 (510)
T ss_pred cccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeee
Confidence 004679999
Q ss_pred cCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCCCC
Q 013716 289 NIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (437)
Q Consensus 289 nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~ 362 (437)
+||...-+.+|...|..||.|.+.++..++.+. ++|+||.|++..+|..||..|||..|++++|+|.+.+.+..
T Consensus 431 hlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~n 506 (510)
T KOG0144|consen 431 HLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRNN 506 (510)
T ss_pred eCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccCC
Confidence 999999999999999999999999998888877 99999999999999999999999999999999999876644
No 15
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-31 Score=245.71 Aligned_cols=250 Identities=29% Similarity=0.502 Sum_probs=218.7
Q ss_pred CCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 013716 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (437)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 185 (437)
.+.|||.||+.+++..+|.++|+.||.|++|++..+.+ | ++|| ||+|.+.++|.+|++.+||..+.+++|.|.....
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 34499999999999999999999999999999999976 5 9999 9999999999999999999999999999976543
Q ss_pred --------------cccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHh
Q 013716 186 --------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKML 251 (437)
Q Consensus 186 --------------~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~ 251 (437)
...+++.+++...+...|..+|..+|. |.++.++.+ ..+++++|+||.|.+.++|..|+..++
T Consensus 153 ~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~-i~s~~v~~~--~~g~~~~~gfv~f~~~e~a~~av~~l~ 229 (369)
T KOG0123|consen 153 KEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGS-ITSVAVMRD--SIGKSKGFGFVNFENPEDAKKAVETLN 229 (369)
T ss_pred hhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCc-ceEEEEeec--CCCCCCCccceeecChhHHHHHHHhcc
Confidence 256899999999999999999999998 999999997 556799999999999999999999998
Q ss_pred ccCcccCCCCCeeeecCCCCCCC------------CcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCC
Q 013716 252 NANFKLDGNTPTISWADPKSTPD------------HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS 319 (437)
Q Consensus 252 ~~~~~~~~~~~~v~~~~~~~~~~------------~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~ 319 (437)
+..+. +..+.|..+....... .........+|||.||+..++.+.|+.+|+.||.|..++|+.+..
T Consensus 230 ~~~~~--~~~~~V~~aqkk~e~~~~l~~~~~~~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~ 307 (369)
T KOG0123|consen 230 GKIFG--DKELYVGRAQKKSEREAELKRKFEQEFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDEN 307 (369)
T ss_pred CCcCC--ccceeecccccchhhHHHHhhhhHhhhhhccccccccccccccCccccchhHHHHHHhcccceeeEEEEeccC
Confidence 87543 5666666665532111 111134567899999999999999999999999999999999888
Q ss_pred CC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCCCCC
Q 013716 320 GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363 (437)
Q Consensus 320 ~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~~ 363 (437)
+. +||+||.|.+.++|.+|+..+|+..+.++.|.|.++.....+
T Consensus 308 g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r 352 (369)
T KOG0123|consen 308 GKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDR 352 (369)
T ss_pred CCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccc
Confidence 88 999999999999999999999999999999999999744443
No 16
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=9.9e-31 Score=240.57 Aligned_cols=241 Identities=25% Similarity=0.457 Sum_probs=216.7
Q ss_pred eEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecccc-
Q 013716 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK- 186 (437)
Q Consensus 108 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~- 186 (437)
.|||+ +++|+..|.++|+.+|+|++++++++. | +.|||||.|.++++|.+|+..+|...+.|++|++.|+...
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 58999 999999999999999999999999998 6 9999999999999999999999999999999999998754
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCeeee
Q 013716 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (437)
Q Consensus 187 ~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~ 266 (437)
..+||.||++.++...|..+|+.||. |.+|++..+... ++|| ||+|.++..|.+|+..+++. .+.++.+.+..
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~-ilS~kv~~~~~g---~kg~-FV~f~~e~~a~~ai~~~ng~--ll~~kki~vg~ 149 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGN-ILSCKVATDENG---SKGY-FVQFESEESAKKAIEKLNGM--LLNGKKIYVGL 149 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcC-eeEEEEEEcCCC---ceee-EEEeCCHHHHHHHHHHhcCc--ccCCCeeEEee
Confidence 45899999999999999999999999 999999998433 8999 99999999999999999886 66788888877
Q ss_pred cCCCCCCCCcc--cccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcC
Q 013716 267 ADPKSTPDHSA--AASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTE 343 (437)
Q Consensus 267 ~~~~~~~~~~~--~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~ 343 (437)
........... .......++|.|++..++...|..+|+.+|.|..+.++.+..+. ++|+||.|.++++|..|+..||
T Consensus 150 ~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~ 229 (369)
T KOG0123|consen 150 FERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLN 229 (369)
T ss_pred ccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhcc
Confidence 76654432211 23445789999999999999999999999999999999999887 9999999999999999999999
Q ss_pred CceeCCeEEEEEeccCCC
Q 013716 344 KYEIDGQVLEVVLAKPQT 361 (437)
Q Consensus 344 g~~i~g~~l~v~~a~~~~ 361 (437)
+..+.+..+.|..+..+.
T Consensus 230 ~~~~~~~~~~V~~aqkk~ 247 (369)
T KOG0123|consen 230 GKIFGDKELYVGRAQKKS 247 (369)
T ss_pred CCcCCccceeecccccch
Confidence 999999999998887633
No 17
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.5e-29 Score=229.35 Aligned_cols=234 Identities=23% Similarity=0.409 Sum_probs=194.6
Q ss_pred CCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 013716 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (437)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 185 (437)
..+|.|+||||.|...+|+.+|+.||.|..|.|++.+. |+-.|||||+|....+|.+|++.+|+..|.||+|.|.|+.+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 67899999999999999999999999999999998877 55569999999999999999999999999999999999653
Q ss_pred c-------------------------------------------------------------------------------
Q 013716 186 K------------------------------------------------------------------------------- 186 (437)
Q Consensus 186 ~------------------------------------------------------------------------------- 186 (437)
+
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 2
Q ss_pred -----------------ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHH
Q 013716 187 -----------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQK 249 (437)
Q Consensus 187 -----------------~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~ 249 (437)
.+|||+|||+++|+++|.+.|+.||+ |..+.++.++ .++++.|.|||.|.+..+|..|+..
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~-v~ya~iV~~k-~T~~skGtAFv~Fkt~~~~~~ci~~ 353 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGE-VKYAIIVKDK-DTGHSKGTAFVKFKTQIAAQNCIEA 353 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhcc-ceeEEEEecc-CCCCcccceEEEeccHHHHHHHHHh
Confidence 46999999999999999999999999 9999999994 8899999999999999999999988
Q ss_pred H----hccCcccCCCCCeeeecCCCCCCCC--------------------------------------------------
Q 013716 250 M----LNANFKLDGNTPTISWADPKSTPDH-------------------------------------------------- 275 (437)
Q Consensus 250 ~----~~~~~~~~~~~~~v~~~~~~~~~~~-------------------------------------------------- 275 (437)
. -...+.+.|+.+.|..+.++.....
T Consensus 354 Aspa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~ 433 (678)
T KOG0127|consen 354 ASPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKR 433 (678)
T ss_pred cCccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHHH
Confidence 7 2233788899999998877632110
Q ss_pred -----cccccCcceEEEecCCCCCCHHHHHHHHhc----cC-Cee-EEEeCCC-----CCCCccEEEEEeCCHHHHHHHH
Q 013716 276 -----SAAASQVKALYVKNIPDNTSTEKIKELFQR----HG-EVT-KVVMPPG-----KSGKRDFGFIHYAERSSALKAV 339 (437)
Q Consensus 276 -----~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~----~G-~v~-~v~i~~~-----~~~~~g~afV~f~~~~~A~~A~ 339 (437)
+......++|.|+|||..++...|..++.. |- .+. .|+.+.. ++.+.||+||.|..++.|.+|+
T Consensus 434 k~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalkal 513 (678)
T KOG0127|consen 434 KKLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKAL 513 (678)
T ss_pred HhhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHhh
Confidence 011112467889999999999999888754 22 222 3343332 2334899999999999999999
Q ss_pred Hhc
Q 013716 340 KDT 342 (437)
Q Consensus 340 ~~l 342 (437)
..+
T Consensus 514 k~~ 516 (678)
T KOG0127|consen 514 KVL 516 (678)
T ss_pred hcc
Confidence 865
No 18
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.96 E-value=1.1e-27 Score=230.35 Aligned_cols=174 Identities=24% Similarity=0.482 Sum_probs=150.3
Q ss_pred cccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCeee
Q 013716 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265 (437)
Q Consensus 186 ~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 265 (437)
.++|||+||++.+++++|+++|..||+ |..+.+++++ .+++++|||||+|.+.++|..|+..+++. .+.|+.+.+.
T Consensus 107 ~~rLfVGnLp~~~tEe~Lr~lF~~fG~-I~sV~I~~D~-~TgkskGfAFVeF~s~e~A~~Ai~~lnG~--~i~GR~IkV~ 182 (612)
T TIGR01645 107 MCRVYVGSISFELREDTIRRAFDPFGP-IKSINMSWDP-ATGKHKGFAFVEYEVPEAAQLALEQMNGQ--MLGGRNIKVG 182 (612)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHccCC-EEEEEEeecC-CCCCcCCeEEEEeCcHHHHHHHHHhcCCe--EEecceeeec
Confidence 468999999999999999999999998 9999999984 67899999999999999999999999765 6789999988
Q ss_pred ecCCCCCCCC-----cccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHH
Q 013716 266 WADPKSTPDH-----SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKA 338 (437)
Q Consensus 266 ~~~~~~~~~~-----~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A 338 (437)
+......... .......++|||+|||+.+++++|+++|+.||.|..|+|.++..++ ||||||+|.+.++|.+|
T Consensus 183 rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kA 262 (612)
T TIGR01645 183 RPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEA 262 (612)
T ss_pred ccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHH
Confidence 6543321110 1111234799999999999999999999999999999999887654 99999999999999999
Q ss_pred HHhcCCceeCCeEEEEEeccCCCCC
Q 013716 339 VKDTEKYEIDGQVLEVVLAKPQTDK 363 (437)
Q Consensus 339 ~~~l~g~~i~g~~l~v~~a~~~~~~ 363 (437)
|..||+..|+|+.|+|.++..+...
T Consensus 263 I~amNg~elgGr~LrV~kAi~pP~~ 287 (612)
T TIGR01645 263 IASMNLFDLGGQYLRVGKCVTPPDA 287 (612)
T ss_pred HHHhCCCeeCCeEEEEEecCCCccc
Confidence 9999999999999999999865433
No 19
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=4.8e-28 Score=209.14 Aligned_cols=248 Identities=20% Similarity=0.388 Sum_probs=204.3
Q ss_pred CCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc-
Q 013716 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE- 184 (437)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~- 184 (437)
-|+|||+.|.+.+.++.|+..|..||+|.+|.+-.|+.|++++|||||+|.-++.|.-|++.||+..+.||.|+|....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999997643
Q ss_pred ----------------ccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHH
Q 013716 185 ----------------TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQ 248 (437)
Q Consensus 185 ----------------~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~ 248 (437)
.-+.+||..+.++.++.+|+.+|+.||+ |..|.+.++| ..+.++||+|++|.+..+...|+.
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~-I~~C~LAr~p-t~~~HkGyGfiEy~n~qs~~eAia 270 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGE-IVKCQLARAP-TGRGHKGYGFIEYNNLQSQSEAIA 270 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcc-eeeEEeeccC-CCCCccceeeEEeccccchHHHhh
Confidence 2368999999999999999999999999 9999999996 567899999999999999999998
Q ss_pred HHhccCcccCCCCCeeeecCCCCCC--------C--------------------------------C-------------
Q 013716 249 KMLNANFKLDGNTPTISWADPKSTP--------D--------------------------------H------------- 275 (437)
Q Consensus 249 ~~~~~~~~~~~~~~~v~~~~~~~~~--------~--------------------------------~------------- 275 (437)
.||- +.++|..++|..+...... . .
T Consensus 271 sMNl--FDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~aa~p 348 (544)
T KOG0124|consen 271 SMNL--FDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPRAAQP 348 (544)
T ss_pred hcch--hhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCccccccCC
Confidence 8753 4555555544433211000 0 0
Q ss_pred -------------------ccc----------------------------------------------------------
Q 013716 276 -------------------SAA---------------------------------------------------------- 278 (437)
Q Consensus 276 -------------------~~~---------------------------------------------------------- 278 (437)
..+
T Consensus 349 ~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~msI~ 428 (544)
T KOG0124|consen 349 LGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEHMSIS 428 (544)
T ss_pred CCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhCcccc
Confidence 000
Q ss_pred --------------ccCcceEEEecC--CCCCCH---HHHHHHHhccCCeeEEEeCCCCCCC------ccEEEEEeCCHH
Q 013716 279 --------------ASQVKALYVKNI--PDNTST---EKIKELFQRHGEVTKVVMPPGKSGK------RDFGFIHYAERS 333 (437)
Q Consensus 279 --------------~~~~~~l~V~nL--p~~~t~---~~L~~~f~~~G~v~~v~i~~~~~~~------~g~afV~f~~~~ 333 (437)
...++.+.++|+ |.++++ .+|.+.|++||.|.+|.|...+.+. ----||+|....
T Consensus 429 G~sARhlvMqkLmR~~~S~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~ 508 (544)
T KOG0124|consen 429 GSSARHLVMQKLMRKQESTVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIAS 508 (544)
T ss_pred CccHHHHHHHHHhccccCcEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhh
Confidence 000456778887 455554 4789999999999999998777553 113699999999
Q ss_pred HHHHHHHhcCCceeCCeEEEEEec
Q 013716 334 SALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 334 ~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
++.+|+..|+|++|+||++.....
T Consensus 509 e~~rak~ALdGRfFgGr~VvAE~Y 532 (544)
T KOG0124|consen 509 ETHRAKQALDGRFFGGRKVVAEVY 532 (544)
T ss_pred HHHHHHHhhccceecCceeehhhh
Confidence 999999999999999999977654
No 20
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.96 E-value=3.1e-28 Score=228.24 Aligned_cols=250 Identities=23% Similarity=0.364 Sum_probs=207.3
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
...+.|+|+|||..+..++|..+|..||.|..|.+.+. | -.|+|+|.++.+|++|+..|....+...++.+.++
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G---~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~a 456 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---G---TGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWA 456 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCcc---c---ceeeeeecCccchHHHHHHhchhhhccCccccccC
Confidence 35578999999999999999999999999999955422 1 14999999999999999999988877666655543
Q ss_pred cc--------------------------------------------------------cccccccCCCCCCCHHHHHHHH
Q 013716 184 ET--------------------------------------------------------KNRLFIGNVPKNWTEDEFRKVI 207 (437)
Q Consensus 184 ~~--------------------------------------------------------~~~l~v~nl~~~~~~~~l~~~f 207 (437)
.. .++|||.||++.++.+.+...|
T Consensus 457 P~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F 536 (725)
T KOG0110|consen 457 PEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLF 536 (725)
T ss_pred hhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHH
Confidence 20 0249999999999999999999
Q ss_pred HhhCCceeEEEEee--CCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCeeeecCCCC--CC-CCcccccCc
Q 013716 208 EDVGPGVETIELIK--DPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--TP-DHSAAASQV 282 (437)
Q Consensus 208 ~~~g~~i~~~~~~~--d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~--~~-~~~~~~~~~ 282 (437)
...|. |.+++|.. +|.+...+.|||||+|.+.++|..|++.|++. .+.|+.+.+.++.... .. .........
T Consensus 537 ~k~G~-VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgt--vldGH~l~lk~S~~k~~~~~gK~~~~kk~~ 613 (725)
T KOG0110|consen 537 SKQGT-VLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGT--VLDGHKLELKISENKPASTVGKKKSKKKKG 613 (725)
T ss_pred HhcCe-EEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCc--eecCceEEEEeccCcccccccccccccccc
Confidence 99997 88887764 44445567899999999999999999999765 7889999999887221 11 111222335
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCC
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (437)
++|+|+|||+..+..+|+++|..||.|..|+|+...... +|||||.|-++.+|.+|+.+|....+.||.|.+.||...
T Consensus 614 tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 614 TKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred ceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccc
Confidence 799999999999999999999999999999999773322 999999999999999999999999999999999999876
Q ss_pred CC
Q 013716 361 TD 362 (437)
Q Consensus 361 ~~ 362 (437)
..
T Consensus 694 ~~ 695 (725)
T KOG0110|consen 694 NT 695 (725)
T ss_pred hH
Confidence 54
No 21
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.96 E-value=1.6e-28 Score=224.13 Aligned_cols=250 Identities=26% Similarity=0.412 Sum_probs=212.5
Q ss_pred CCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEe
Q 013716 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (437)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 181 (437)
..+..+|||+--|+..+++.+|.+||+.+|+|..|+|+.++.+++++|.|||+|.+.++...|| .|.|..+.|.+|.|.
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQ 253 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEec
Confidence 3346789999999999999999999999999999999999999999999999999999999999 899999999999998
Q ss_pred ecccc--------------------ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChH
Q 013716 182 LSETK--------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNA 241 (437)
Q Consensus 182 ~~~~~--------------------~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~ 241 (437)
.+... ..|||+||.+.+++..|+.+|+.||. |..|.+.+| ..+|.++||+|++|.+.+
T Consensus 254 ~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~-Ie~v~l~~d-~~tG~skgfGfi~f~~~~ 331 (549)
T KOG0147|consen 254 LSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGK-IENVQLTKD-SETGRSKGFGFITFVNKE 331 (549)
T ss_pred ccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCccc-ceeeeeccc-cccccccCcceEEEecHH
Confidence 75421 34899999999999999999999998 999999998 468999999999999999
Q ss_pred HHHHHHHHHhccCcccCCCCCeeeecCCCCCCC-----------------------------------------------
Q 013716 242 CADYSRQKMLNANFKLDGNTPTISWADPKSTPD----------------------------------------------- 274 (437)
Q Consensus 242 ~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~----------------------------------------------- 274 (437)
+|.+|+..||+ +.+.|+.+.|..........
T Consensus 332 ~ar~a~e~lng--felAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l 409 (549)
T KOG0147|consen 332 DARKALEQLNG--FELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISAL 409 (549)
T ss_pred HHHHHHHHhcc--ceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHH
Confidence 99999999988 88889888776543221100
Q ss_pred -------------------Ccccc-------cCcceEEEecCCCCCCH----------HHHHHHHhccCCeeEEEeCCCC
Q 013716 275 -------------------HSAAA-------SQVKALYVKNIPDNTST----------EKIKELFQRHGEVTKVVMPPGK 318 (437)
Q Consensus 275 -------------------~~~~~-------~~~~~l~V~nLp~~~t~----------~~L~~~f~~~G~v~~v~i~~~~ 318 (437)
...+. ..+.|+.+.|+-...++ ++|.+-+.+||.|.+|.|..+.
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns 489 (549)
T KOG0147|consen 410 LLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNS 489 (549)
T ss_pred HhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCC
Confidence 00000 22456777776432222 5888999999999999998776
Q ss_pred CCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 319 SGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 319 ~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
. |+.||.|.+.+.|..|+..|||.||.||.|+..|-..
T Consensus 490 ~---g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~ 527 (549)
T KOG0147|consen 490 A---GCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPL 527 (549)
T ss_pred C---ceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeeh
Confidence 4 7999999999999999999999999999999999753
No 22
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.6e-27 Score=210.47 Aligned_cols=172 Identities=26% Similarity=0.473 Sum_probs=151.1
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccC-CCCCeee
Q 013716 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLD-GNTPTIS 265 (437)
Q Consensus 187 ~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~-~~~~~v~ 265 (437)
-++||+.+|+.|++.+|+.+|++||. |..|.+++| +.++.++|||||.|.+.++|.+|+.++++.....+ ...+.|+
T Consensus 35 vKlfVgqIprt~sE~dlr~lFe~yg~-V~einl~kD-k~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 35 VKLFVGQIPRTASEKDLRELFEKYGN-VYEINLIKD-KSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhheeccCCccccHHHHHHHHHHhCc-eeEEEeecc-cccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 47999999999999999999999998 999999999 67889999999999999999999999988754332 3466777
Q ss_pred ecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCC
Q 013716 266 WADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEK 344 (437)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g 344 (437)
++....... ...++|||+-|+..+|+.+|+.+|++||.|+.|+|+++..+. ||||||+|.+.+.|..||+.|||
T Consensus 113 ~Ad~E~er~-----~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng 187 (510)
T KOG0144|consen 113 YADGERERI-----VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNG 187 (510)
T ss_pred ccchhhhcc-----ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhcc
Confidence 776655432 234799999999999999999999999999999999999887 99999999999999999999998
Q ss_pred c-eeCC--eEEEEEeccCCCCCCC
Q 013716 345 Y-EIDG--QVLEVVLAKPQTDKKT 365 (437)
Q Consensus 345 ~-~i~g--~~l~v~~a~~~~~~~~ 365 (437)
. ++.| .+|.|+||.++..+..
T Consensus 188 ~~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 188 TQTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred ceeeccCCCceEEEecccCCCchH
Confidence 7 7776 5899999998876544
No 23
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=7.7e-26 Score=213.46 Aligned_cols=168 Identities=22% Similarity=0.451 Sum_probs=149.5
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCee
Q 013716 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (437)
Q Consensus 185 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (437)
++.+|||+|||..+++++|+++|+.||+ |..++++++ ..+++++|||||+|.+.++|.+|+..|++. .+.++.+.+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~-i~~v~i~~d-~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~--~l~g~~i~v 77 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGE-IESCKLVRD-KVTGQSLGYGFVNYVRPEDAEKAVNSLNGL--RLQNKTIKV 77 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCC-EEEEEEEEc-CCCCccceEEEEEECcHHHHHHHHhhcccE--EECCeeEEE
Confidence 4678999999999999999999999998 999999998 466889999999999999999999999874 778999999
Q ss_pred eecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCC-C-ccEEEEEeCCHHHHHHHHHhc
Q 013716 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDT 342 (437)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-~g~afV~f~~~~~A~~A~~~l 342 (437)
.|+.+.... ....+|||+|||..+++++|+.+|++||.|..+.++.+... . +|||||+|.+.++|.+||..|
T Consensus 78 ~~a~~~~~~------~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l 151 (352)
T TIGR01661 78 SYARPSSDS------IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTL 151 (352)
T ss_pred Eeecccccc------cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHh
Confidence 998876542 23468999999999999999999999999999998876533 3 899999999999999999999
Q ss_pred CCceeCC--eEEEEEeccCCCC
Q 013716 343 EKYEIDG--QVLEVVLAKPQTD 362 (437)
Q Consensus 343 ~g~~i~g--~~l~v~~a~~~~~ 362 (437)
||..+.| ++|.|.|+..+..
T Consensus 152 ~g~~~~g~~~~i~v~~a~~~~~ 173 (352)
T TIGR01661 152 NGTTPSGCTEPITVKFANNPSS 173 (352)
T ss_pred CCCccCCCceeEEEEECCCCCc
Confidence 9999887 6789999876653
No 24
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.1e-26 Score=193.06 Aligned_cols=157 Identities=31% Similarity=0.602 Sum_probs=147.0
Q ss_pred CCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 013716 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (437)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 185 (437)
-.-|||+.|...++-+.|++.|.+||.|.++++++|.+|+++|||+||-|.+.++|+.||..|||..|.+|.|+..|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred c----------------------ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHH
Q 013716 186 K----------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACA 243 (437)
Q Consensus 186 ~----------------------~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a 243 (437)
+ +++|++|++..++++.+++.|+.||+ |..||+.++ +||+||.|.+.++|
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~-I~EVRvFk~-------qGYaFVrF~tkEaA 213 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGP-IQEVRVFKD-------QGYAFVRFETKEAA 213 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCc-ceEEEEecc-------cceEEEEecchhhH
Confidence 3 68999999999999999999999999 999999997 78999999999999
Q ss_pred HHHHHHHhccCcccCCCCCeeeecCCCCC
Q 013716 244 DYSRQKMLNANFKLDGNTPTISWADPKST 272 (437)
Q Consensus 244 ~~a~~~~~~~~~~~~~~~~~v~~~~~~~~ 272 (437)
.+|+-.+++. .+.|..+++.|......
T Consensus 214 ahAIv~mNnt--ei~G~~VkCsWGKe~~~ 240 (321)
T KOG0148|consen 214 AHAIVQMNNT--EIGGQLVRCSWGKEGDD 240 (321)
T ss_pred HHHHHHhcCc--eeCceEEEEeccccCCC
Confidence 9999999887 77888889988776654
No 25
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.94 E-value=3e-25 Score=200.07 Aligned_cols=245 Identities=18% Similarity=0.272 Sum_probs=188.7
Q ss_pred CCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEe
Q 013716 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (437)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 181 (437)
.......|.+++|||++|+++|.+||+.|+ |..+.+.+. +|+..|-|||+|.+.+++++|++ ++...+..|.|.|.
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEE
Confidence 344567799999999999999999999996 777766654 49999999999999999999995 58889999999998
Q ss_pred eccc-----------------cccccccCCCCCCCHHHHHHHHHhhCCceeE-EEEeeCCCCCCCCccEEEEEecChHHH
Q 013716 182 LSET-----------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVET-IELIKDPQNPSRNRGFSFVLYYNNACA 243 (437)
Q Consensus 182 ~~~~-----------------~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~-~~~~~d~~~~~~~~g~~fv~f~~~~~a 243 (437)
.+.. ...|.+++||+.|++++|.++|+.+-. +.. +.++.++ .+++.+-|||+|.+.+.|
T Consensus 82 ~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~I-v~~gi~l~~d~--rgR~tGEAfVqF~sqe~a 158 (510)
T KOG4211|consen 82 TAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEI-VPDGILLPMDQ--RGRPTGEAFVQFESQESA 158 (510)
T ss_pred ccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcc-cccceeeeccC--CCCcccceEEEecCHHHH
Confidence 7642 245788999999999999999999876 444 5566663 466899999999999999
Q ss_pred HHHHHHHhccCcccCCCCCeeeec-----------------------------------CCCC-----------------
Q 013716 244 DYSRQKMLNANFKLDGNTPTISWA-----------------------------------DPKS----------------- 271 (437)
Q Consensus 244 ~~a~~~~~~~~~~~~~~~~~v~~~-----------------------------------~~~~----------------- 271 (437)
++|+..... .++.+.|.|-.+ ..+.
T Consensus 159 e~Al~rhre---~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g 235 (510)
T KOG4211|consen 159 EIALGRHRE---NIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYG 235 (510)
T ss_pred HHHHHHHHH---hhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccc
Confidence 999976432 222222211110 0000
Q ss_pred ------------------------CCC---C--------cccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCC
Q 013716 272 ------------------------TPD---H--------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPP 316 (437)
Q Consensus 272 ------------------------~~~---~--------~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~ 316 (437)
... + .........++.++||+..+..++..+|+.. ....|.|..
T Consensus 236 ~~~~~~~~d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl-~p~~v~i~i 314 (510)
T KOG4211|consen 236 FSRYPSLQDYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPL-NPYRVHIEI 314 (510)
T ss_pred cccCccccccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCC-CceeEEEEe
Confidence 000 0 0000012578899999999999999999986 444788887
Q ss_pred CCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 317 GKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 317 ~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
...++ .|-|+|+|.|+++|..|+.+ ++..+..+.|.+....
T Consensus 315 g~dGr~TGEAdveF~t~edav~Amsk-d~anm~hrYVElFln~ 356 (510)
T KOG4211|consen 315 GPDGRATGEADVEFATGEDAVGAMGK-DGANMGHRYVELFLNG 356 (510)
T ss_pred CCCCccCCcceeecccchhhHhhhcc-CCcccCcceeeecccC
Confidence 88888 89999999999999999986 7888889988887653
No 26
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=1.9e-26 Score=180.68 Aligned_cols=170 Identities=24% Similarity=0.371 Sum_probs=149.2
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
...||||+||+..++++-|.++|-+.|+|+.+++.+++.+...+|||||+|.+.++|.-|++-||...|.||+|+|..+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999987764
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCee
Q 013716 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (437)
Q Consensus 185 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (437)
...+ |
T Consensus 88 ~~~~----n----------------------------------------------------------------------- 92 (203)
T KOG0131|consen 88 AHQK----N----------------------------------------------------------------------- 92 (203)
T ss_pred cccc----c-----------------------------------------------------------------------
Confidence 1100 0
Q ss_pred eecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEE-EeCCCCCCC--ccEEEEEeCCHHHHHHHHHh
Q 013716 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGK--RDFGFIHYAERSSALKAVKD 341 (437)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v-~i~~~~~~~--~g~afV~f~~~~~A~~A~~~ 341 (437)
...+.+|||+||.+.+++..|.+.|+.||.+... .|+++..+. +|||||.|.+.+.+.+|+..
T Consensus 93 --------------l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s 158 (203)
T KOG0131|consen 93 --------------LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGS 158 (203)
T ss_pred --------------ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHH
Confidence 0111479999999999999999999999988753 677776643 89999999999999999999
Q ss_pred cCCceeCCeEEEEEeccCCCCC
Q 013716 342 TEKYEIDGQVLEVVLAKPQTDK 363 (437)
Q Consensus 342 l~g~~i~g~~l~v~~a~~~~~~ 363 (437)
+||..+..++++|.++..+..+
T Consensus 159 ~ngq~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 159 MNGQYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred hccchhcCCceEEEEEEecCCC
Confidence 9999999999999999866543
No 27
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.94 E-value=5e-25 Score=194.85 Aligned_cols=145 Identities=26% Similarity=0.462 Sum_probs=128.8
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhh-cccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLC-EPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f-~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
..|.+||.|||+++.+.+|+++| .+.|.|..|.|+.|.. |+++|||.|+|++++.+++|++.||...+.||+|.|...
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~-GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES-GKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC-CCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 34569999999999999999999 6789999999999975 999999999999999999999999999999999999753
Q ss_pred ccc-----------------------------------------------------------------------------
Q 013716 184 ETK----------------------------------------------------------------------------- 186 (437)
Q Consensus 184 ~~~----------------------------------------------------------------------------- 186 (437)
...
T Consensus 122 ~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~ 201 (608)
T KOG4212|consen 122 HDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSA 201 (608)
T ss_pred CchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchh
Confidence 210
Q ss_pred --------------ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhc
Q 013716 187 --------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLN 252 (437)
Q Consensus 187 --------------~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~ 252 (437)
..+||.||.+.+....|++.|.-.|. |+.+.+..|. .+.++++|.++|.++-.|-.|+..+..
T Consensus 202 ~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGk-v~~vdf~idK--eG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 202 SFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGK-VQSVDFSIDK--EGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred hhhhhccCCCCCccceeeeeccccccchHHHHHHhcccee-eeeeceeecc--ccccCCeeEEEecchHHHHHHHHhhcc
Confidence 35889999999999999999999998 9998888873 357889999999999999999998875
Q ss_pred c
Q 013716 253 A 253 (437)
Q Consensus 253 ~ 253 (437)
.
T Consensus 279 ~ 279 (608)
T KOG4212|consen 279 Q 279 (608)
T ss_pred C
Confidence 3
No 28
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.93 E-value=1.3e-24 Score=209.14 Aligned_cols=193 Identities=20% Similarity=0.352 Sum_probs=158.2
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCC-eEEEEEee-cCCCCCcccEEEEEecCHHHHHHHHHHhCC--CccCCeEEE
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGD-VFEVRLMK-DKESGESKGFAFVSFRSKEFAKKAIDELHS--KELKGKTIR 179 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~-i~~v~~~~-~~~~~~~~g~afV~f~~~~~A~~a~~~l~~--~~~~g~~i~ 179 (437)
...++|||+|||+++|+++|.++|++++. ++.+.++. ...+++++|||||+|.+.++|..|+..|+. ..+.|+.|.
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 35689999999999999999999999863 44444432 334568899999999999999999988764 357899999
Q ss_pred Eeecccc-----------ccccccCCCCCCCHHHHHHHHHhh--CCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHH
Q 013716 180 CSLSETK-----------NRLFIGNVPKNWTEDEFRKVIEDV--GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYS 246 (437)
Q Consensus 180 v~~~~~~-----------~~l~v~nl~~~~~~~~l~~~f~~~--g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a 246 (437)
|.++.+. ++|||+||+..+++++|+++|+.| |. |..+.+++ +||||+|.+.++|.+|
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~-I~rV~~~r---------gfAFVeF~s~e~A~kA 285 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGK-VERVKKIR---------DYAFVHFEDREDAVKA 285 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCc-eEEEEeec---------CeEEEEeCCHHHHHHH
Confidence 9987753 569999999999999999999999 87 88887654 4999999999999999
Q ss_pred HHHHhccCcccCCCCCeeeecCCCCCCCC----------------------cccccCcceEEEecCCCCCCHHHHHHHHh
Q 013716 247 RQKMLNANFKLDGNTPTISWADPKSTPDH----------------------SAAASQVKALYVKNIPDNTSTEKIKELFQ 304 (437)
Q Consensus 247 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------------------~~~~~~~~~l~V~nLp~~~t~~~L~~~f~ 304 (437)
+..|++. .+.++.|.|.|+.+...... ........+++++|+++..++.-++.+|.
T Consensus 286 i~~lnG~--~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~ 363 (578)
T TIGR01648 286 MDELNGK--ELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPR 363 (578)
T ss_pred HHHhCCC--EECCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccc
Confidence 9999876 78999999999988643210 00112357899999999999998988888
Q ss_pred ccCC
Q 013716 305 RHGE 308 (437)
Q Consensus 305 ~~G~ 308 (437)
.+|.
T Consensus 364 ~~g~ 367 (578)
T TIGR01648 364 MPGP 367 (578)
T ss_pred cCcc
Confidence 7764
No 29
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.93 E-value=7.6e-25 Score=213.79 Aligned_cols=172 Identities=19% Similarity=0.389 Sum_probs=146.6
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCe
Q 013716 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (437)
Q Consensus 184 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 263 (437)
...++|||+|||..+++.+|+++|+.+|. |..+.++.+ ..+++++|||||+|.+.++|.+|+. +++ ..+.++.+.
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~-v~~v~i~~d-~~~~~skg~afVeF~~~e~A~~Al~-l~g--~~~~g~~i~ 161 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGK-VRDVQCIKD-RNSRRSKGVAYVEFYDVESVIKALA-LTG--QMLLGRPII 161 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEeec-CCCCCcceEEEEEECCHHHHHHHHH-hCC--CEECCeeeE
Confidence 34678999999999999999999999997 999999998 4678999999999999999999986 443 467788888
Q ss_pred eeecCCCCCCCC------cccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCC-C-ccEEEEEeCCHHHH
Q 013716 264 ISWADPKSTPDH------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSA 335 (437)
Q Consensus 264 v~~~~~~~~~~~------~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-~g~afV~f~~~~~A 335 (437)
+.+......... .......++|||+|||..+++++|+++|++||.|..|.|+.+..+ . +|||||+|.+.++|
T Consensus 162 v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A 241 (457)
T TIGR01622 162 VQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEA 241 (457)
T ss_pred EeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 877543322111 111123589999999999999999999999999999999988765 3 99999999999999
Q ss_pred HHHHHhcCCceeCCeEEEEEeccCC
Q 013716 336 LKAVKDTEKYEIDGQVLEVVLAKPQ 360 (437)
Q Consensus 336 ~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (437)
.+|+..|||..|.|++|+|.|+...
T Consensus 242 ~~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 242 KEALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred HHHHHhcCCcEECCEEEEEEEccCC
Confidence 9999999999999999999998743
No 30
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.93 E-value=1.1e-24 Score=217.53 Aligned_cols=167 Identities=22% Similarity=0.443 Sum_probs=147.7
Q ss_pred cccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCeeeec
Q 013716 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWA 267 (437)
Q Consensus 188 ~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~ 267 (437)
+|||+|||..+++++|+++|+.||. |..|++.+| ..+++++|||||.|.+.++|.+|+..++.. .+.++.+++.|+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~-v~~v~v~~d-~~t~~s~G~afV~F~~~~~A~~Al~~ln~~--~i~gk~i~i~~s 77 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGP-VLSVRVCRD-SVTRRSLGYGYVNFQNPADAERALETMNFK--RLGGKPIRIMWS 77 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCC-EEEEEEEec-CCCCCcceEEEEEECCHHHHHHHHHHhCCC--EECCeeEEeecc
Confidence 6899999999999999999999998 999999999 567889999999999999999999998765 567999999997
Q ss_pred CCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCce
Q 013716 268 DPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYE 346 (437)
Q Consensus 268 ~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~ 346 (437)
........ ....+|||+|||.++++++|+++|+.||.|..|+|..+..++ +|||||+|.+.++|.+|+..|||..
T Consensus 78 ~~~~~~~~----~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~ 153 (562)
T TIGR01628 78 QRDPSLRR----SGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGML 153 (562)
T ss_pred cccccccc----cCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccE
Confidence 64432221 234689999999999999999999999999999999887775 9999999999999999999999999
Q ss_pred eCCeEEEEEeccCCCC
Q 013716 347 IDGQVLEVVLAKPQTD 362 (437)
Q Consensus 347 i~g~~l~v~~a~~~~~ 362 (437)
+.|+.|.|.....+..
T Consensus 154 ~~~~~i~v~~~~~~~~ 169 (562)
T TIGR01628 154 LNDKEVYVGRFIKKHE 169 (562)
T ss_pred ecCceEEEeccccccc
Confidence 9999999977654433
No 31
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.8e-24 Score=178.76 Aligned_cols=169 Identities=24% Similarity=0.466 Sum_probs=152.3
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCee
Q 013716 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (437)
Q Consensus 185 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (437)
.+++|.|.-||..+|+++++.+|.+.|+ |++|.+++| +.+|.+-||+||.|.++.+|.+|+..+++ +.+..++|+|
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGe-iEScKLvRD-KitGqSLGYGFVNYv~p~DAe~AintlNG--LrLQ~KTIKV 115 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGE-IESCKLVRD-KITGQSLGYGFVNYVRPKDAEKAINTLNG--LRLQNKTIKV 115 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccc-eeeeeeeec-cccccccccceeeecChHHHHHHHhhhcc--eeeccceEEE
Confidence 4577889999999999999999999999 999999999 68899999999999999999999999976 4788999999
Q ss_pred eecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhc
Q 013716 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDT 342 (437)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l 342 (437)
.++.|.... ....+|||.+||..+|..+|.++|++||.|..-+|+.+..+. ||.|||.|+...+|..||..|
T Consensus 116 SyARPSs~~------Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~l 189 (360)
T KOG0145|consen 116 SYARPSSDS------IKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGL 189 (360)
T ss_pred EeccCChhh------hcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhc
Confidence 999998765 334689999999999999999999999999887777776655 999999999999999999999
Q ss_pred CCceeCCe--EEEEEeccCCCCC
Q 013716 343 EKYEIDGQ--VLEVVLAKPQTDK 363 (437)
Q Consensus 343 ~g~~i~g~--~l~v~~a~~~~~~ 363 (437)
||+.-.|. +|.|.||..+...
T Consensus 190 NG~~P~g~tepItVKFannPsq~ 212 (360)
T KOG0145|consen 190 NGQKPSGCTEPITVKFANNPSQK 212 (360)
T ss_pred cCCCCCCCCCCeEEEecCCcccc
Confidence 99977764 7999999876544
No 32
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.92 E-value=1.3e-24 Score=182.59 Aligned_cols=152 Identities=29% Similarity=0.562 Sum_probs=139.0
Q ss_pred eEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeeccccc
Q 013716 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN 187 (437)
Q Consensus 108 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~~ 187 (437)
.|||+|||..+++.+|+.+|++||+|+.|.|+++ ||||...+...|..||..||+..|+|..|.|..++.++
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 5999999999999999999999999999999876 89999999999999999999999999999988776432
Q ss_pred cccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCeeeec
Q 013716 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWA 267 (437)
Q Consensus 188 ~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~ 267 (437)
+
T Consensus 76 k------------------------------------------------------------------------------- 76 (346)
T KOG0109|consen 76 K------------------------------------------------------------------------------- 76 (346)
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred CCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCcee
Q 013716 268 DPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI 347 (437)
Q Consensus 268 ~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i 347 (437)
.+++|+|+||.+.++..+|+..|.+||.|..+.|.+ +|+||.|.-.++|..|++.|++..|
T Consensus 77 -------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk------dy~fvh~d~~eda~~air~l~~~~~ 137 (346)
T KOG0109|consen 77 -------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK------DYAFVHFDRAEDAVEAIRGLDNTEF 137 (346)
T ss_pred -------------CccccccCCCCccccCHHHhhhhcccCCceeeeeec------ceeEEEEeeccchHHHHhccccccc
Confidence 225899999999999999999999999999999976 5899999999999999999999999
Q ss_pred CCeEEEEEeccCCCCCCC
Q 013716 348 DGQVLEVVLAKPQTDKKT 365 (437)
Q Consensus 348 ~g~~l~v~~a~~~~~~~~ 365 (437)
.|++|+|.++..+.+...
T Consensus 138 ~gk~m~vq~stsrlrtap 155 (346)
T KOG0109|consen 138 QGKRMHVQLSTSRLRTAP 155 (346)
T ss_pred ccceeeeeeeccccccCC
Confidence 999999999987766543
No 33
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.1e-23 Score=187.24 Aligned_cols=190 Identities=26% Similarity=0.438 Sum_probs=157.9
Q ss_pred ecCHHHHHHHHHHhCCCccCCeEEEEeeccc----------------cccccccCCCCCCCHHHHHHHHHhhCCceeEEE
Q 013716 155 FRSKEFAKKAIDELHSKELKGKTIRCSLSET----------------KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIE 218 (437)
Q Consensus 155 f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~----------------~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~ 218 (437)
..+.++|.++|..-. |..|.|...+. .+.|||+.||.++.+++|.-+|++.|+ |..++
T Consensus 41 ~~~~eaal~al~E~t-----gy~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~-I~elR 114 (506)
T KOG0117|consen 41 VQSEEAALKALLERT-----GYTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGK-IYELR 114 (506)
T ss_pred cccHHHHHHHHHHhc-----CceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccc-eeeEE
Confidence 344788888885433 45566655442 278999999999999999999999999 99999
Q ss_pred EeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCeeeecCCCCCCCCcccccCcceEEEecCCCCCCHHH
Q 013716 219 LIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEK 298 (437)
Q Consensus 219 ~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~ 298 (437)
+++|| .+|.+||||||+|.+.+.|+.|++.|++..+. .|+.|.|..+..+ ++|||+|||.++++++
T Consensus 115 LMmD~-~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir-~GK~igvc~Svan------------~RLFiG~IPK~k~kee 180 (506)
T KOG0117|consen 115 LMMDP-FSGDNRGYAFVTFCTKEEAQEAIKELNNYEIR-PGKLLGVCVSVAN------------CRLFIGNIPKTKKKEE 180 (506)
T ss_pred Eeecc-cCCCCcceEEEEeecHHHHHHHHHHhhCcccc-CCCEeEEEEeeec------------ceeEeccCCccccHHH
Confidence 99995 77999999999999999999999999987654 6777777665433 6899999999999999
Q ss_pred HHHHHhccCC-eeEEEeCCCCCCC---ccEEEEEeCCHHHHHHHHHhcCC--ceeCCeEEEEEeccCCCCCC
Q 013716 299 IKELFQRHGE-VTKVVMPPGKSGK---RDFGFIHYAERSSALKAVKDTEK--YEIDGQVLEVVLAKPQTDKK 364 (437)
Q Consensus 299 L~~~f~~~G~-v~~v~i~~~~~~~---~g~afV~f~~~~~A~~A~~~l~g--~~i~g~~l~v~~a~~~~~~~ 364 (437)
|.+.|++.+. |+.|.|......+ ||||||+|.++..|..|-++|-. .++.|+.+.|.||.+.....
T Consensus 181 Ilee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~d 252 (506)
T KOG0117|consen 181 ILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPD 252 (506)
T ss_pred HHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcceeeccCcccCCC
Confidence 9999999874 7788776544332 99999999999999999988853 37789999999999887644
No 34
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.91 E-value=4.2e-23 Score=183.00 Aligned_cols=176 Identities=26% Similarity=0.514 Sum_probs=148.0
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
..++|||++|+|++|++.|+.+|.+||.|..|.+++++.+++++||+||+|.+++...++|. .....|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 56889999999999999999999999999999999999999999999999999999998884 35556677776655443
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCee
Q 013716 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (437)
Q Consensus 185 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (437)
+.
T Consensus 84 ~r------------------------------------------------------------------------------ 85 (311)
T KOG4205|consen 84 SR------------------------------------------------------------------------------ 85 (311)
T ss_pred Cc------------------------------------------------------------------------------
Confidence 22
Q ss_pred eecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhc
Q 013716 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDT 342 (437)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l 342 (437)
............++|||++||..+++++|+++|.+||.|..+.++.+.... +||+||.|.+.+.+.+++. .
T Consensus 86 ------~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~ 158 (311)
T KOG4205|consen 86 ------EDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-Q 158 (311)
T ss_pred ------ccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-c
Confidence 111111111234699999999999999999999999999999888887766 9999999999999999887 5
Q ss_pred CCceeCCeEEEEEeccCCCCCCCC
Q 013716 343 EKYEIDGQVLEVVLAKPQTDKKTE 366 (437)
Q Consensus 343 ~g~~i~g~~l~v~~a~~~~~~~~~ 366 (437)
+-+.|.|+.|.|..|.++......
T Consensus 159 ~f~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 159 KFHDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred ceeeecCceeeEeeccchhhcccc
Confidence 889999999999999999876654
No 35
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=1.6e-22 Score=167.96 Aligned_cols=260 Identities=22% Similarity=0.347 Sum_probs=162.9
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCc-cC--CeEEE
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE-LK--GKTIR 179 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~-~~--g~~i~ 179 (437)
....+.|||+-|...-.|++++.+|..||.|.+|.+.+... |.+||||||.|.+..+|..||..||+.. +. ...|.
T Consensus 16 g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 16 GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 33567799999999999999999999999999999999876 9999999999999999999999999975 33 35677
Q ss_pred Eeecccccc---------------------------------------ccccC----CCCCCCHH-HHH---HHHHhhCC
Q 013716 180 CSLSETKNR---------------------------------------LFIGN----VPKNWTED-EFR---KVIEDVGP 212 (437)
Q Consensus 180 v~~~~~~~~---------------------------------------l~v~n----l~~~~~~~-~l~---~~f~~~g~ 212 (437)
|.++...+. +...+ |.+.++.. ... ..+.--|-
T Consensus 95 VK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl 174 (371)
T KOG0146|consen 95 VKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGL 174 (371)
T ss_pred EEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhccc
Confidence 888764310 00011 11111111 000 11111110
Q ss_pred ---ceeEEEEeeCCC------CCCC-----CccE-EEEEecChHHHHHHHHHHhccCcccCCCC----------------
Q 013716 213 ---GVETIELIKDPQ------NPSR-----NRGF-SFVLYYNNACADYSRQKMLNANFKLDGNT---------------- 261 (437)
Q Consensus 213 ---~i~~~~~~~d~~------~~~~-----~~g~-~fv~f~~~~~a~~a~~~~~~~~~~~~~~~---------------- 261 (437)
.|....-...|. -.+. -.+| +...+.+..-|..++-.-.-..+......
T Consensus 175 ~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~ 254 (371)
T KOG0146|consen 175 AAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYA 254 (371)
T ss_pred ccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHh
Confidence 011100000000 0011 1111 12222222223222221111111000000
Q ss_pred -------CeeeecCCC---CCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEe
Q 013716 262 -------PTISWADPK---STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHY 329 (437)
Q Consensus 262 -------~~v~~~~~~---~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f 329 (437)
..+..+-+. .-.........+++|||..||....+.+|.++|-+||.|++.+++.++.++ |+|+||.|
T Consensus 255 Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSf 334 (371)
T KOG0146|consen 255 AAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSF 334 (371)
T ss_pred hhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEec
Confidence 000000000 001112223457899999999999999999999999999988887776655 99999999
Q ss_pred CCHHHHHHHHHhcCCceeCCeEEEEEeccCCCCC
Q 013716 330 AERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363 (437)
Q Consensus 330 ~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~~ 363 (437)
+++.+|..||..|||..|+-++|+|.+.+++...
T Consensus 335 DNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdan 368 (371)
T KOG0146|consen 335 DNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDAN 368 (371)
T ss_pred CCchhHHHHHHHhcchhhhhhhhhhhhcCccccC
Confidence 9999999999999999999999999999887653
No 36
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.88 E-value=2e-21 Score=170.87 Aligned_cols=244 Identities=24% Similarity=0.299 Sum_probs=192.2
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCC--ccCCeEEEEe
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK--ELKGKTIRCS 181 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~--~~~g~~i~v~ 181 (437)
..++.|++||||+++||.+|..++..||.|..+.+++-++ .|||+|.+.++|...+...... .+.|+.|.|.
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 3678899999999999999999999999999999876543 7999999999999855443332 3567777776
Q ss_pred ecccc----------------------------------------------ccccccCCCCCCCHHHHHHHHHhhCCcee
Q 013716 182 LSETK----------------------------------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVE 215 (437)
Q Consensus 182 ~~~~~----------------------------------------------~~l~v~nl~~~~~~~~l~~~f~~~g~~i~ 215 (437)
++... -.++|.++-+.++-+-|..+|+.||. |.
T Consensus 100 ~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~-Vl 178 (492)
T KOG1190|consen 100 YSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGF-VL 178 (492)
T ss_pred hhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcce-eE
Confidence 64311 13567889999999999999999998 65
Q ss_pred EEEEeeCCCCCCCCccE-EEEEecChHHHHHHHHHHhccCcccCCCCCeeeecCCCC------------------CCC--
Q 013716 216 TIELIKDPQNPSRNRGF-SFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS------------------TPD-- 274 (437)
Q Consensus 216 ~~~~~~d~~~~~~~~g~-~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~------------------~~~-- 274 (437)
.|.... ++.+| |+|+|.+...|..|...|.++.+.-+++++++.++.-.. ...
T Consensus 179 KIiTF~------Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~ 252 (492)
T KOG1190|consen 179 KIITFT------KNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDG 252 (492)
T ss_pred EEEEEe------cccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCcc
Confidence 554433 23444 899999999999999999999887777777776642220 000
Q ss_pred ----------------------------------C-ccccc--CcceEEEecCC-CCCCHHHHHHHHhccCCeeEEEeCC
Q 013716 275 ----------------------------------H-SAAAS--QVKALYVKNIP-DNTSTEKIKELFQRHGEVTKVVMPP 316 (437)
Q Consensus 275 ----------------------------------~-~~~~~--~~~~l~V~nLp-~~~t~~~L~~~f~~~G~v~~v~i~~ 316 (437)
. ..... ....|.|.||- ..+|.+.|..+|+-||.|.+|+|+.
T Consensus 253 ~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~ 332 (492)
T KOG1190|consen 253 QPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILY 332 (492)
T ss_pred ccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeee
Confidence 0 00000 13678888886 7799999999999999999999998
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCCCCC
Q 013716 317 GKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363 (437)
Q Consensus 317 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~~ 363 (437)
++. --|+|+|.+...|.-|+..|+|+.|.|++|+|.+++...-.
T Consensus 333 nkk---d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vq 376 (492)
T KOG1190|consen 333 NKK---DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQ 376 (492)
T ss_pred cCC---cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcccc
Confidence 874 46999999999999999999999999999999999866544
No 37
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.88 E-value=9.9e-22 Score=194.65 Aligned_cols=162 Identities=20% Similarity=0.363 Sum_probs=137.8
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
..++|||+|||+.+|+++|+++|+.||.|..+.|+++..+|.++|||||+|.+.++|..||+.|++..|.|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999998863
Q ss_pred c----------------------------------cccccccCCCCCC----------CHHHHHHHHHhhCCceeEEEEe
Q 013716 185 T----------------------------------KNRLFIGNVPKNW----------TEDEFRKVIEDVGPGVETIELI 220 (437)
Q Consensus 185 ~----------------------------------~~~l~v~nl~~~~----------~~~~l~~~f~~~g~~i~~~~~~ 220 (437)
. .+.|+|.|+.... ..++|+++|..||. |..|.|.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~-v~~v~i~ 452 (509)
T TIGR01642 374 VGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGP-LINIVIP 452 (509)
T ss_pred cCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCC-eeEEEee
Confidence 1 2345667764321 23578999999998 9999998
Q ss_pred eCC--CCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCeeeecCC
Q 013716 221 KDP--QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269 (437)
Q Consensus 221 ~d~--~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~ 269 (437)
++. ..++.+.|++||+|.+.++|.+|+..|++. .+.|+.+.+.|...
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr--~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGR--KFNDRVVVAAFYGE 501 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEEeCH
Confidence 752 233556799999999999999999999887 56788888877554
No 38
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.88 E-value=6.2e-22 Score=186.20 Aligned_cols=222 Identities=26% Similarity=0.423 Sum_probs=176.7
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
....+|||+|||+.+++++|+.+| |||.|..++.|.+|...+++..+.||-|.|...
T Consensus 225 ~etgrlf~RNLpyt~~eed~~~lf-----------------------a~v~~~~~~~avka~~~~D~k~fqgrmlhvlp~ 281 (725)
T KOG0110|consen 225 SETGRLFVRNLPYTSTEEDLLKLF-----------------------AFVTFMFPEHAVKAYSELDGKVFQGRMLHVLPS 281 (725)
T ss_pred HhhhhhhhccCCccccHHHHHHhh-----------------------HHHhhhhhHHHHhhhhhccccccccceeeecCc
Confidence 356789999999999999999998 799999999999999999999999999998664
Q ss_pred ccc-----------------------------------------------------------------------------
Q 013716 184 ETK----------------------------------------------------------------------------- 186 (437)
Q Consensus 184 ~~~----------------------------------------------------------------------------- 186 (437)
..+
T Consensus 282 ~~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~etr~~ 361 (725)
T KOG0110|consen 282 KEKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALGETRVV 361 (725)
T ss_pred chhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHHHhhhc
Confidence 311
Q ss_pred ------------------------ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHH
Q 013716 187 ------------------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNAC 242 (437)
Q Consensus 187 ------------------------~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~ 242 (437)
+.++++|||..+..+++..+|..||+ |..+.+. | .-.-++|.|.+..+
T Consensus 362 ~e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~-i~rvllp--~-----~G~~aiv~fl~p~e 433 (725)
T KOG0110|consen 362 QEVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGE-IGRVLLP--P-----GGTGAIVEFLNPLE 433 (725)
T ss_pred hhhhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccc-cceeecC--c-----ccceeeeeecCccc
Confidence 34789999999999999999999998 8887443 2 22348999999999
Q ss_pred HHHHHHHHhccCcccCCCCCeeeecCCCCCC---------------------CC------------c-----------cc
Q 013716 243 ADYSRQKMLNANFKLDGNTPTISWADPKSTP---------------------DH------------S-----------AA 278 (437)
Q Consensus 243 a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~---------------------~~------------~-----------~~ 278 (437)
|.+|++.|....+ ....+.+.|+...... .. . ..
T Consensus 434 Ar~Afrklaysr~--k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~ 511 (725)
T KOG0110|consen 434 ARKAFRKLAYSRF--KSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAED 511 (725)
T ss_pred hHHHHHHhchhhh--ccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhc
Confidence 9999998865432 2333333333211000 00 0 00
Q ss_pred ccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-----ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEE
Q 013716 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-----RDFGFIHYAERSSALKAVKDTEKYEIDGQVLE 353 (437)
Q Consensus 279 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 353 (437)
....++|||.||++.+|.++|..+|...|.|..|.|...+... .|||||+|.+.++|.+|++.|+|+.|+|+.|.
T Consensus 512 ~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~ 591 (725)
T KOG0110|consen 512 EETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLE 591 (725)
T ss_pred cccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEE
Confidence 0012349999999999999999999999999999887665442 59999999999999999999999999999999
Q ss_pred EEecc
Q 013716 354 VVLAK 358 (437)
Q Consensus 354 v~~a~ 358 (437)
|.++.
T Consensus 592 lk~S~ 596 (725)
T KOG0110|consen 592 LKISE 596 (725)
T ss_pred EEecc
Confidence 99997
No 39
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=3.6e-20 Score=160.69 Aligned_cols=170 Identities=24% Similarity=0.487 Sum_probs=149.1
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCeeee
Q 013716 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (437)
Q Consensus 187 ~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~ 266 (437)
+.+||+.+.+...++.|+..|..||+ |.+|.+.+|| .++++++|+||+|.-.+.|..|+..||+. .++||.+.|.+
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGP-IKSInMSWDp-~T~kHKgFAFVEYEvPEaAqLAlEqMNg~--mlGGRNiKVgr 189 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGP-IKSINMSWDP-ATGKHKGFAFVEYEVPEAAQLALEQMNGQ--MLGGRNIKVGR 189 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCC-cceeeccccc-ccccccceEEEEEeCcHHHHHHHHHhccc--cccCccccccC
Confidence 67999999999999999999999999 9999999996 78999999999999999999999999887 77899998875
Q ss_pred cCCCCCCCC-----cccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHH
Q 013716 267 ADPKSTPDH-----SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAV 339 (437)
Q Consensus 267 ~~~~~~~~~-----~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~ 339 (437)
...-..... ........+|||..+..++++++|+.+|..||.|..|.+.+...++ ||||||+|.+..+...||
T Consensus 190 PsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAi 269 (544)
T KOG0124|consen 190 PSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAI 269 (544)
T ss_pred CCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHh
Confidence 433322111 1112335789999999999999999999999999999999988776 999999999999999999
Q ss_pred HhcCCceeCCeEEEEEeccCC
Q 013716 340 KDTEKYEIDGQVLEVVLAKPQ 360 (437)
Q Consensus 340 ~~l~g~~i~g~~l~v~~a~~~ 360 (437)
..||-+.++|..|+|-.+..+
T Consensus 270 asMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 270 ASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred hhcchhhcccceEecccccCC
Confidence 999999999999999876544
No 40
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.84 E-value=2.2e-19 Score=147.39 Aligned_cols=208 Identities=17% Similarity=0.347 Sum_probs=150.6
Q ss_pred CCCeEEEcCCCcCCCHHHHHH----hhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 013716 105 NGSEVFIGGLPKDASEEDLRD----LCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~----~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 180 (437)
+..||||.||+..+..++|+. +|++||.|.+|...+. .+.+|.|||.|.+.+.|..|+..|+|..+.|+.|+|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt---~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT---PKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC---CCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 344999999999999999998 9999999999988754 678999999999999999999999999999999999
Q ss_pred eeccccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCC
Q 013716 181 SLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGN 260 (437)
Q Consensus 181 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~ 260 (437)
.+|+.+..++..--+..+.. .......++.+.+ ... ..++....
T Consensus 85 qyA~s~sdii~~~~~~~v~~----------~~k~~~~~~~~~~-~~~---------------------~~ng~~~~---- 128 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEK----------EKKINGEILARIK-QPL---------------------DTNGHFYN---- 128 (221)
T ss_pred ecccCccchhhccCceeccc----------cCccccccccccC-Ccc---------------------cccccccc----
Confidence 99998876544321111000 0001111111000 000 00000000
Q ss_pred CCeeeecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHH
Q 013716 261 TPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340 (437)
Q Consensus 261 ~~~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~ 340 (437)
........+. ......+...||+.|||..++.+.|..+|.+|.....|+++... ++.|||+|.+...|..|..
T Consensus 129 ~~~~~~p~p~----~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~---~~iAfve~~~d~~a~~a~~ 201 (221)
T KOG4206|consen 129 MNRMNLPPPF----LAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR---SGIAFVEFLSDRQASAAQQ 201 (221)
T ss_pred cccccCCCCc----cccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC---CceeEEecchhhhhHHHhh
Confidence 0000011111 02223556799999999999999999999999999999998866 3799999999999999999
Q ss_pred hcCCceeC-CeEEEEEecc
Q 013716 341 DTEKYEID-GQVLEVVLAK 358 (437)
Q Consensus 341 ~l~g~~i~-g~~l~v~~a~ 358 (437)
.|++..|. ...++|.+++
T Consensus 202 ~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 202 ALQGFKITKKNTMQITFAK 220 (221)
T ss_pred hhccceeccCceEEecccC
Confidence 99999887 8889998874
No 41
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.82 E-value=4.1e-19 Score=142.45 Aligned_cols=82 Identities=18% Similarity=0.409 Sum_probs=75.0
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..||++.|.|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 345789999999999999999999999999999998876543 999999999999999999999999999999999999
Q ss_pred cCCC
Q 013716 358 KPQT 361 (437)
Q Consensus 358 ~~~~ 361 (437)
.++.
T Consensus 112 ~~~~ 115 (144)
T PLN03134 112 NDRP 115 (144)
T ss_pred CcCC
Confidence 7643
No 42
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.79 E-value=9.4e-18 Score=145.15 Aligned_cols=203 Identities=21% Similarity=0.372 Sum_probs=144.5
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeE--------EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccC
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVF--------EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 174 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~--------~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 174 (437)
+...+.|||.|||.++|.+++.++|++||-|. .|+|.++.. |..+|-|.+.|-..+++.-|++.|++..|.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCccccc
Confidence 45667799999999999999999999999774 488999877 999999999999999999999999999999
Q ss_pred CeEEEEeeccccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccC
Q 013716 175 GKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN 254 (437)
Q Consensus 175 g~~i~v~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~ 254 (437)
|+.|+|..|+ |+.-|. - . .+++.++- ..-.+-+..+....
T Consensus 210 g~~~rVerAk----------------------fq~Kge-~-~--------~~~k~k~k--------~~~~kk~~k~q~k~ 249 (382)
T KOG1548|consen 210 GKKLRVERAK----------------------FQMKGE-Y-D--------ASKKEKGK--------CKDKKKLKKQQQKL 249 (382)
T ss_pred CcEEEEehhh----------------------hhhccC-c-C--------cccccccc--------cccHHHHHHHHHhh
Confidence 9999999885 222221 0 0 00000000 00001111111111
Q ss_pred cccCCCCCeeeecCCCCCCCCcccccCcceEEEecCCC----CCC-------HHHHHHHHhccCCeeEEEeCCCCCCCcc
Q 013716 255 FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPD----NTS-------TEKIKELFQRHGEVTKVVMPPGKSGKRD 323 (437)
Q Consensus 255 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~----~~t-------~~~L~~~f~~~G~v~~v~i~~~~~~~~g 323 (437)
+. |.... .........++|.++||-. ..+ .++|++-+++||.|.+|.|...+.. |
T Consensus 250 ~d---------w~pd~---~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPd--G 315 (382)
T KOG1548|consen 250 LD---------WRPDR---DDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPD--G 315 (382)
T ss_pred cc---------cCCCc---cccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCC--c
Confidence 11 11111 0011113447899999842 223 2467777999999999999855543 8
Q ss_pred EEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCC
Q 013716 324 FGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (437)
Q Consensus 324 ~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (437)
.+-|.|.+.++|..||+.|+|+.|+||.|..+....+
T Consensus 316 vvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 316 VVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred eeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 9999999999999999999999999999998886544
No 43
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.79 E-value=1.7e-18 Score=151.27 Aligned_cols=250 Identities=17% Similarity=0.227 Sum_probs=186.1
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
....|..++|||..+..+|..+|+..-...-.+.+-....|+..|.|.|.|.+.+.-.-|++. |...+.++.|.|..+.
T Consensus 59 ~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievYka~ 137 (508)
T KOG1365|consen 59 DNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVYKAT 137 (508)
T ss_pred cceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHh-hhhhccCCceeeeccC
Confidence 456789999999999999999998654333223333333488889999999999999999965 8888899999997765
Q ss_pred cc----------------------ccccccCCCCCCCHHHHHHHHHhhCC---ceeEEEEeeCCCCCCCCccEEEEEecC
Q 013716 185 TK----------------------NRLFIGNVPKNWTEDEFRKVIEDVGP---GVETIELIKDPQNPSRNRGFSFVLYYN 239 (437)
Q Consensus 185 ~~----------------------~~l~v~nl~~~~~~~~l~~~f~~~g~---~i~~~~~~~d~~~~~~~~g~~fv~f~~ 239 (437)
.. --+.+++||++++..++..+|..-.+ ....+.++. +..++..|-|||.|..
T Consensus 138 ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~--rpdgrpTGdAFvlfa~ 215 (508)
T KOG1365|consen 138 GEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVT--RPDGRPTGDAFVLFAC 215 (508)
T ss_pred chhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEE--CCCCCcccceEEEecC
Confidence 32 13556899999999999999974322 256666666 3568999999999999
Q ss_pred hHHHHHHHHHHhccCcccCCCCCeeee----------------------cCCC---CCCCCcccccCcceEEEecCCCCC
Q 013716 240 NACADYSRQKMLNANFKLDGNTPTISW----------------------ADPK---STPDHSAAASQVKALYVKNIPDNT 294 (437)
Q Consensus 240 ~~~a~~a~~~~~~~~~~~~~~~~~v~~----------------------~~~~---~~~~~~~~~~~~~~l~V~nLp~~~ 294 (437)
+.+|..|+.+-.. .++.|.|.+-+ ..+- .............||.+++||+..
T Consensus 216 ee~aq~aL~khrq---~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~A 292 (508)
T KOG1365|consen 216 EEDAQFALRKHRQ---NIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEA 292 (508)
T ss_pred HHHHHHHHHHHHH---HHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhh
Confidence 9999999876432 11111111000 0000 000011111235799999999999
Q ss_pred CHHHHHHHHhccCC-ee--EEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCC
Q 013716 295 STEKIKELFQRHGE-VT--KVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (437)
Q Consensus 295 t~~~L~~~f~~~G~-v~--~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (437)
+.++|..||..|-. |. .|++..+..|+ .|-|||+|.+.+.|..|..+.|++...+|.|.|.-+...
T Consensus 293 tvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~e 362 (508)
T KOG1365|consen 293 TVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVE 362 (508)
T ss_pred hHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHH
Confidence 99999999999874 44 48888888888 999999999999999999999998888999999877543
No 44
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=2.2e-18 Score=160.41 Aligned_cols=241 Identities=20% Similarity=0.415 Sum_probs=189.5
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhccc-----------C-CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPI-----------G-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~-----------G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~ 172 (437)
..+.++|+++|+.++++.+..+|..- | .|+.+.| ...+.+|||+|.+.+.|..|+ .+++..
T Consensus 174 q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~------n~~~nfa~ie~~s~~~at~~~-~~~~~~ 246 (500)
T KOG0120|consen 174 QARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL------NLEKNFAFIEFRSISEATEAM-ALDGII 246 (500)
T ss_pred hhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee------cccccceeEEecCCCchhhhh-cccchh
Confidence 56789999999999999999998653 3 4677766 445669999999999999999 778888
Q ss_pred cCCeEEEEeecc-----------------------------ccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCC
Q 013716 173 LKGKTIRCSLSE-----------------------------TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP 223 (437)
Q Consensus 173 ~~g~~i~v~~~~-----------------------------~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~ 223 (437)
+.|+.+.+.... ..+++||++||...++.+++++...||+ +....++.+.
T Consensus 247 f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~-lk~f~lv~d~ 325 (500)
T KOG0120|consen 247 FEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGP-LKAFRLVKDS 325 (500)
T ss_pred hCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhccc-chhheeeccc
Confidence 888877764322 1257999999999999999999999998 9999999994
Q ss_pred CCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCeeeecCCCCCCCC------------------cccccCcceE
Q 013716 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH------------------SAAASQVKAL 285 (437)
Q Consensus 224 ~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~------------------~~~~~~~~~l 285 (437)
.++.+++|||..|.+......|++.+++. .+.++.+.++.+........ +.....+..|
T Consensus 326 -~~g~skg~af~ey~dpsvtd~A~agLnGm--~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl 402 (500)
T KOG0120|consen 326 -ATGNSKGFAFCEYCDPSVTDQAIAGLNGM--QLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVL 402 (500)
T ss_pred -ccccccceeeeeeeCCcchhhhhcccchh--hhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhh
Confidence 56899999999999999999999988775 55666666666544422111 1111223444
Q ss_pred EEecCCCCCCH-------------HHHHHHHhccCCeeEEEeCCC-CCCC----ccEEEEEeCCHHHHHHHHHhcCCcee
Q 013716 286 YVKNIPDNTST-------------EKIKELFQRHGEVTKVVMPPG-KSGK----RDFGFIHYAERSSALKAVKDTEKYEI 347 (437)
Q Consensus 286 ~V~nLp~~~t~-------------~~L~~~f~~~G~v~~v~i~~~-~~~~----~g~afV~f~~~~~A~~A~~~l~g~~i 347 (437)
.+.|+ ++. ++|+.-|++||.|..|.|++. .... .|..||+|.+.+++++|+..|+|+.|
T Consensus 403 ~L~n~---Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF 479 (500)
T KOG0120|consen 403 CLTNV---VTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKF 479 (500)
T ss_pred hhhhc---CCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCcee
Confidence 44443 222 466777899999999999987 3221 67789999999999999999999999
Q ss_pred CCeEEEEEeccC
Q 013716 348 DGQVLEVVLAKP 359 (437)
Q Consensus 348 ~g~~l~v~~a~~ 359 (437)
.||.|...|...
T Consensus 480 ~nRtVvtsYyde 491 (500)
T KOG0120|consen 480 ANRTVVASYYDE 491 (500)
T ss_pred CCcEEEEEecCH
Confidence 999999999754
No 45
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=2.6e-17 Score=129.64 Aligned_cols=174 Identities=20% Similarity=0.315 Sum_probs=131.3
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
...++|||+|||.++.+.+|.++|.+||.|..|.|... -..-.||||+|.++.+|..||..-++..+.|..|+|.++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 46789999999999999999999999999999988543 234679999999999999999999999999999999988
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCe
Q 013716 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (437)
Q Consensus 184 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 263 (437)
...+.-.-+. | ...+..++ +
T Consensus 81 rggr~s~~~~-----------------G------------~y~gggrg---------------------------G---- 100 (241)
T KOG0105|consen 81 RGGRSSSDRR-----------------G------------SYSGGGRG---------------------------G---- 100 (241)
T ss_pred cCCCcccccc-----------------c------------ccCCCCCC---------------------------C----
Confidence 6432100000 0 00000000 0
Q ss_pred eeecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcC
Q 013716 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343 (437)
Q Consensus 264 v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 343 (437)
+ ......-.........|.|.+||.+.++++|+++..+-|.|....+.++ |++.|+|...++.+-|+..|.
T Consensus 101 --g--g~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-----g~GvV~~~r~eDMkYAvr~ld 171 (241)
T KOG0105|consen 101 --G--GGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-----GVGVVEYLRKEDMKYAVRKLD 171 (241)
T ss_pred --C--CCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-----cceeeeeeehhhHHHHHHhhc
Confidence 0 0000000111123368999999999999999999999999999988877 589999999999999999999
Q ss_pred CceeCC
Q 013716 344 KYEIDG 349 (437)
Q Consensus 344 g~~i~g 349 (437)
...+..
T Consensus 172 ~~~~~s 177 (241)
T KOG0105|consen 172 DQKFRS 177 (241)
T ss_pred cccccC
Confidence 876653
No 46
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.77 E-value=6.8e-17 Score=142.63 Aligned_cols=237 Identities=18% Similarity=0.222 Sum_probs=186.7
Q ss_pred eEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccC--CeEEEEeeccc
Q 013716 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK--GKTIRCSLSET 185 (437)
Q Consensus 108 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~--g~~i~v~~~~~ 185 (437)
+++|.|+-+-+|-+-|..+|++||.|..|.-....+ .-.|.|+|.+.+.|..|...|+|..|. .++|++.+++-
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~Knn----~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Skl 227 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIITFTKNN----GFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKL 227 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEEEeccc----chhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhc
Confidence 578999999999999999999999998876544322 234999999999999999999999875 35677766431
Q ss_pred ---------------------------------------------------------------------cccccccCCC-
Q 013716 186 ---------------------------------------------------------------------KNRLFIGNVP- 195 (437)
Q Consensus 186 ---------------------------------------------------------------------~~~l~v~nl~- 195 (437)
...|.|.||.
T Consensus 228 t~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~ 307 (492)
T KOG1190|consen 228 TDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNE 307 (492)
T ss_pred ccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCch
Confidence 0234556664
Q ss_pred CCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCeeeecCCCCCCCC
Q 013716 196 KNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDH 275 (437)
Q Consensus 196 ~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 275 (437)
..+|.+.|..+|.-||. |..|.|+.+ .+..|+|++.+...|..|+..|.+. .+-++.+++.++......-.
T Consensus 308 ~~VT~d~LftlFgvYGd-VqRVkil~n------kkd~ALIQmsd~~qAqLA~~hL~g~--~l~gk~lrvt~SKH~~vqlp 378 (492)
T KOG1190|consen 308 EAVTPDVLFTLFGVYGD-VQRVKILYN------KKDNALIQMSDGQQAQLAMEHLEGH--KLYGKKLRVTLSKHTNVQLP 378 (492)
T ss_pred hccchhHHHHHHhhhcc-eEEEEeeec------CCcceeeeecchhHHHHHHHHhhcc--eecCceEEEeeccCccccCC
Confidence 45899999999999998 999999986 2368999999999999999999776 66778888887755421100
Q ss_pred -----------------------------cccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEE
Q 013716 276 -----------------------------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGF 326 (437)
Q Consensus 276 -----------------------------~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~af 326 (437)
...-+++.+|.+.|||.++++++|+.+|..-|-..+......+. +.+|+
T Consensus 379 ~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd--~kmal 456 (492)
T KOG1190|consen 379 REGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKD--RKMAL 456 (492)
T ss_pred CCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCC--cceee
Confidence 00113356899999999999999999999988766554433322 36999
Q ss_pred EEeCCHHHHHHHHHhcCCceeCC-eEEEEEeccC
Q 013716 327 IHYAERSSALKAVKDTEKYEIDG-QVLEVVLAKP 359 (437)
Q Consensus 327 V~f~~~~~A~~A~~~l~g~~i~g-~~l~v~~a~~ 359 (437)
+.+.+.++|..|+..+|.+.++. ..|+|+|++.
T Consensus 457 ~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 457 PQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred cccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 99999999999999999999885 5999999864
No 47
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.77 E-value=7.1e-17 Score=140.81 Aligned_cols=245 Identities=20% Similarity=0.208 Sum_probs=199.3
Q ss_pred CCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHH--hCCCccCCeEEE
Q 013716 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE--LHSKELKGKTIR 179 (437)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~--l~~~~~~g~~i~ 179 (437)
.++.+-.|+|++|-..+++.+|.+.++.||.|..|..+..+ ..|.|+|.+.+.|+.|+.. -+...+.|+.-.
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al 100 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAGQQAL 100 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccCchhh
Confidence 34567789999999999999999999999999999987654 4799999999999999843 234456677776
Q ss_pred Eeecccc-------------ccc--cccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHH
Q 013716 180 CSLSETK-------------NRL--FIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244 (437)
Q Consensus 180 v~~~~~~-------------~~l--~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~ 244 (437)
+.++... +.| .|-|--+.+|-+-|..+....|+ |..|.|++. .--.|.|+|.+.+.|+
T Consensus 101 ~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~Gk-VlRIvIfkk------ngVQAmVEFdsv~~Aq 173 (494)
T KOG1456|consen 101 FNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGK-VLRIVIFKK------NGVQAMVEFDSVEVAQ 173 (494)
T ss_pred cccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCc-eEEEEEEec------cceeeEEeechhHHHH
Confidence 6666322 223 24566677899999999999998 888888763 3446999999999999
Q ss_pred HHHHHHhccCcccCCCCCeeeecCCCCCCC--------------------------------------------------
Q 013716 245 YSRQKMLNANFKLDGNTPTISWADPKSTPD-------------------------------------------------- 274 (437)
Q Consensus 245 ~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------------------------------------------------- 274 (437)
+|...|++..+..+.+++++.+|.|..-.-
T Consensus 174 rAk~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~ 253 (494)
T KOG1456|consen 174 RAKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYY 253 (494)
T ss_pred HHHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCc
Confidence 999999999999999999999998871000
Q ss_pred --------------------------CcccccCcceEEEecCC-CCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEE
Q 013716 275 --------------------------HSAAASQVKALYVKNIP-DNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFI 327 (437)
Q Consensus 275 --------------------------~~~~~~~~~~l~V~nLp-~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV 327 (437)
.+....++..+.|.+|. ..++-+.|..+|..||.|.+|++++.+. |.|.|
T Consensus 254 sg~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~---gtamV 330 (494)
T KOG1456|consen 254 SGDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP---GTAMV 330 (494)
T ss_pred ccccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc---ceeEE
Confidence 00111224679999998 5567788999999999999999998875 68999
Q ss_pred EeCCHHHHHHHHHhcCCceeCCeEEEEEeccCCCC
Q 013716 328 HYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (437)
Q Consensus 328 ~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~ 362 (437)
++.+..+.++|+..||+..+-|.+|.|.+++...-
T Consensus 331 emgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~v 365 (494)
T KOG1456|consen 331 EMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNFV 365 (494)
T ss_pred EcCcHHHHHHHHHHhccCccccceEEEeecccccc
Confidence 99999999999999999999999999999875543
No 48
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.76 E-value=7e-18 Score=135.31 Aligned_cols=83 Identities=36% Similarity=0.677 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
..+++|||+|||+.+|+++|+++|++||.|.+|+|+.++.|++++|||||+|.+.++|++|++.|++..|.|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 013716 184 ETK 186 (437)
Q Consensus 184 ~~~ 186 (437)
..+
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 754
No 49
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.74 E-value=7.2e-18 Score=154.83 Aligned_cols=174 Identities=19% Similarity=0.449 Sum_probs=141.9
Q ss_pred cccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCeee
Q 013716 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265 (437)
Q Consensus 186 ~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 265 (437)
.+++|+-.|+...+..+|.++|+.+|. |..++++.| +.+++++|.+||+|.+.+....|+ .|.++ .+.|.++.|+
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gk-VrdVriI~D-r~s~rskgi~Yvef~D~~sVp~ai-aLsGq--rllg~pv~vq 253 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGK-VRDVRIIGD-RNSRRSKGIAYVEFCDEQSVPLAI-ALSGQ--RLLGVPVIVQ 253 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcC-cceeEeecc-ccchhhcceeEEEEecccchhhHh-hhcCC--cccCceeEec
Confidence 367888888888999999999999998 999999999 788999999999999999998888 44444 5566666665
Q ss_pred ecCCCCCC--------CCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCC-CCC-ccEEEEEeCCHHHH
Q 013716 266 WADPKSTP--------DHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGK-RDFGFIHYAERSSA 335 (437)
Q Consensus 266 ~~~~~~~~--------~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~-~~~-~g~afV~f~~~~~A 335 (437)
........ .......+...|||+||.+++++.+|+.+|.+||.|..|.+..+. .+. +|||||+|.+.++|
T Consensus 254 ~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~a 333 (549)
T KOG0147|consen 254 LSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDA 333 (549)
T ss_pred ccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHH
Confidence 43222111 001111222349999999999999999999999999999999997 444 99999999999999
Q ss_pred HHHHHhcCCceeCCeEEEEEeccCCCCCC
Q 013716 336 LKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364 (437)
Q Consensus 336 ~~A~~~l~g~~i~g~~l~v~~a~~~~~~~ 364 (437)
.+|+..|||..|.|+.|+|.....+....
T Consensus 334 r~a~e~lngfelAGr~ikV~~v~~r~~~~ 362 (549)
T KOG0147|consen 334 RKALEQLNGFELAGRLIKVSVVTERVDTK 362 (549)
T ss_pred HHHHHHhccceecCceEEEEEeeeecccc
Confidence 99999999999999999999887665544
No 50
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.72 E-value=1.8e-16 Score=128.73 Aligned_cols=227 Identities=19% Similarity=0.247 Sum_probs=133.7
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecC-CCCCcccEEEEEecCHHHHHHHHHHhCCCccC---CeEEEE
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDK-ESGESKGFAFVSFRSKEFAKKAIDELHSKELK---GKTIRC 180 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~-~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~---g~~i~v 180 (437)
.-+||||.+||.++...+|..+|..|-....+.|.... .....+-+|||.|.+...|..|+..|||..|. +..|++
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 46899999999999999999999999877777665432 22345689999999999999999999999985 889999
Q ss_pred eeccccccccccCC---CCCCCHH--HHHHHHHhh-CCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccC
Q 013716 181 SLSETKNRLFIGNV---PKNWTED--EFRKVIEDV-GPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN 254 (437)
Q Consensus 181 ~~~~~~~~l~v~nl---~~~~~~~--~l~~~f~~~-g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~ 254 (437)
..++.+.+.--... |...+.- ..+. +..+ ......+....+|.... ..+. | .|++.. ..
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~-~~qr~sa~~qhd~~l~~p~~l~-~~~~----------a-~al~~~--~~ 177 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRN-KEQRKSADDQHDEGLSDPDELQ-EPGN----------A-DALKEN--DT 177 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccC-hhhcccchhhccccccCccccC-Cccc----------c-ccCCCc--cc
Confidence 99886644322111 1100000 0000 0000 00000000000110000 0000 0 000000 00
Q ss_pred cccCCCCCeeeecCCCCC-----CCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEe
Q 013716 255 FKLDGNTPTISWADPKST-----PDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHY 329 (437)
Q Consensus 255 ~~~~~~~~~v~~~~~~~~-----~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f 329 (437)
..-.......+|+.+... .........+.+|||-||...+++++|+.+|+.|-....++|.... + ..+|||.|
T Consensus 178 t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~-g-~~vaf~~~ 255 (284)
T KOG1457|consen 178 TKSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARG-G-MPVAFADF 255 (284)
T ss_pred cchhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCC-C-cceEeecH
Confidence 000000011112221111 0001112345789999999999999999999999877766664322 2 46899999
Q ss_pred CCHHHHHHHHHhcCCceeC
Q 013716 330 AERSSALKAVKDTEKYEID 348 (437)
Q Consensus 330 ~~~~~A~~A~~~l~g~~i~ 348 (437)
++.+.|..|+..|+|..|.
T Consensus 256 ~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 256 EEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred HHHHHHHHHHHHhhcceec
Confidence 9999999999999987653
No 51
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.71 E-value=4.8e-16 Score=141.03 Aligned_cols=166 Identities=16% Similarity=0.238 Sum_probs=132.6
Q ss_pred cccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCeeeec
Q 013716 188 RLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWA 267 (437)
Q Consensus 188 ~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~ 267 (437)
.|.+++||+++|.++|.++|+.++ |.++.+.+ .+++..|-|||+|.+++++.+|+++-. -.+..+.|.|-.+
T Consensus 12 ~vr~rGLPwsat~~ei~~Ff~~~~--I~~~~~~r---~~Gr~sGeA~Ve~~seedv~~AlkkdR---~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 12 EVRLRGLPWSATEKEILDFFSNCG--IENLEIPR---RNGRPSGEAYVEFTSEEDVEKALKKDR---ESMGHRYIEVFTA 83 (510)
T ss_pred EEEecCCCccccHHHHHHHHhcCc--eeEEEEec---cCCCcCcceEEEeechHHHHHHHHhhH---HHhCCceEEEEcc
Confidence 456789999999999999999998 88866655 568999999999999999999998743 3567777777666
Q ss_pred CCCCCCC-----CcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeE-EEeCCCCCCC-ccEEEEEeCCHHHHHHHHH
Q 013716 268 DPKSTPD-----HSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGK-RDFGFIHYAERSSALKAVK 340 (437)
Q Consensus 268 ~~~~~~~-----~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~-v~i~~~~~~~-~g~afV~f~~~~~A~~A~~ 340 (437)
.+..... ..........|.+++||+.||+++|.+||+..-.|.. |.++.+..++ .|-|||+|++.+.|++|+.
T Consensus 84 ~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~ 163 (510)
T KOG4211|consen 84 GGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG 163 (510)
T ss_pred CCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH
Confidence 4443211 1111135578999999999999999999998755555 5677777777 8999999999999999998
Q ss_pred hcCCceeCCeEEEEEeccCCCC
Q 013716 341 DTEKYEIDGQVLEVVLAKPQTD 362 (437)
Q Consensus 341 ~l~g~~i~g~~l~v~~a~~~~~ 362 (437)
. |...|+.|.|.|..+.....
T Consensus 164 r-hre~iGhRYIEvF~Ss~~e~ 184 (510)
T KOG4211|consen 164 R-HRENIGHRYIEVFRSSRAEV 184 (510)
T ss_pred H-HHHhhccceEEeehhHHHHH
Confidence 6 88899999999988764443
No 52
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.68 E-value=2.7e-16 Score=135.12 Aligned_cols=88 Identities=24% Similarity=0.392 Sum_probs=81.6
Q ss_pred ccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 279 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
....++|+|.|||+...+-||+.+|.+||.|.+|.|+.+..|+||||||+|++.++|.+|-.+|||..|.||+|.|+.|.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 013716 359 PQTDKKTE 366 (437)
Q Consensus 359 ~~~~~~~~ 366 (437)
.+...+..
T Consensus 173 arV~n~K~ 180 (376)
T KOG0125|consen 173 ARVHNKKK 180 (376)
T ss_pred hhhccCCc
Confidence 87655443
No 53
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.65 E-value=6.5e-16 Score=109.16 Aligned_cols=70 Identities=44% Similarity=0.872 Sum_probs=67.0
Q ss_pred EEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 013716 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (437)
Q Consensus 109 l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 179 (437)
|||+|||.++|+++|+++|++||.|..+.+..+ .+++++++|||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 5699999999999999999999999999999999885
No 54
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.64 E-value=6.1e-15 Score=135.68 Aligned_cols=81 Identities=16% Similarity=0.359 Sum_probs=74.9
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+++|+++|+++|+.||.|+.|+|+.+..+. +|||||+|.+.++|.+||..||+..|.+++|+|.|+
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 456899999999999999999999999999999998876543 899999999999999999999999999999999998
Q ss_pred cCC
Q 013716 358 KPQ 360 (437)
Q Consensus 358 ~~~ 360 (437)
++.
T Consensus 185 ~p~ 187 (346)
T TIGR01659 185 RPG 187 (346)
T ss_pred ccc
Confidence 764
No 55
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.63 E-value=1.1e-15 Score=107.89 Aligned_cols=69 Identities=25% Similarity=0.616 Sum_probs=65.0
Q ss_pred EEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEE
Q 013716 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLE 353 (437)
Q Consensus 285 l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 353 (437)
|||+|||..+++++|+++|++||.|..+.+..+..++ +++|||+|.+.++|.+|+..|+|..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999875555 99999999999999999999999999999986
No 56
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.62 E-value=2.5e-13 Score=118.92 Aligned_cols=240 Identities=17% Similarity=0.273 Sum_probs=184.8
Q ss_pred CeEEEc--CCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccC--CeEEEEee
Q 013716 107 SEVFIG--GLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK--GKTIRCSL 182 (437)
Q Consensus 107 ~~l~v~--nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~--g~~i~v~~ 182 (437)
..|.+. |--+.+|.+-|..++...|+|.+|.|.+.. --.|.|+|.+.+.|++|.+.|||.-|. -.+|+|.+
T Consensus 121 ~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn-----gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIey 195 (494)
T KOG1456|consen 121 KVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN-----GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEY 195 (494)
T ss_pred eEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc-----ceeeEEeechhHHHHHHHhhcccccccccceeEEEEe
Confidence 344444 545679999999999999999999998752 236999999999999999999999774 57888888
Q ss_pred cccc----------------------------------------------------------------------------
Q 013716 183 SETK---------------------------------------------------------------------------- 186 (437)
Q Consensus 183 ~~~~---------------------------------------------------------------------------- 186 (437)
+++.
T Consensus 196 AkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~ 275 (494)
T KOG1456|consen 196 AKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDG 275 (494)
T ss_pred cCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccC
Confidence 7743
Q ss_pred ------------ccccccCCCCC-CCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhcc
Q 013716 187 ------------NRLFIGNVPKN-WTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253 (437)
Q Consensus 187 ------------~~l~v~nl~~~-~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 253 (437)
..+.|.+|... +.-+-|..+|-.||. |..|.+++. ..+.|.|++.+..+.++|+..|++.
T Consensus 276 ~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGN-V~rvkFmkT------k~gtamVemgd~~aver~v~hLnn~ 348 (494)
T KOG1456|consen 276 RGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGN-VERVKFMKT------KPGTAMVEMGDAYAVERAVTHLNNI 348 (494)
T ss_pred CCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCc-eeeEEEeec------ccceeEEEcCcHHHHHHHHHHhccC
Confidence 12334444433 456778899999998 999999986 4578999999999999999999886
Q ss_pred CcccCCCCCeeeecCCCCCC-------------------------------CCcccccCcceEEEecCCCCCCHHHHHHH
Q 013716 254 NFKLDGNTPTISWADPKSTP-------------------------------DHSAAASQVKALYVKNIPDNTSTEKIKEL 302 (437)
Q Consensus 254 ~~~~~~~~~~v~~~~~~~~~-------------------------------~~~~~~~~~~~l~V~nLp~~~t~~~L~~~ 302 (437)
.+ -|.++.+..+...... .......++++|..-|.|..+|++.|..+
T Consensus 349 ~l--fG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i 426 (494)
T KOG1456|consen 349 PL--FGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGI 426 (494)
T ss_pred cc--ccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHH
Confidence 44 5555555554333110 00111234688999999999999999999
Q ss_pred HhccCC-eeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCe------EEEEEeccCC
Q 013716 303 FQRHGE-VTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ------VLEVVLAKPQ 360 (437)
Q Consensus 303 f~~~G~-v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~------~l~v~~a~~~ 360 (437)
|...+. .++|+|+..+..+..-+.++|++..+|..||..||...|.+. .|++.|+.++
T Consensus 427 ~nek~v~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 427 CNEKDVPPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred hhhcCCCcceEEeecccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 987653 468888888866666799999999999999999999988763 5777777654
No 57
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=2.5e-15 Score=124.22 Aligned_cols=82 Identities=37% Similarity=0.590 Sum_probs=79.4
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
...+|.|.|||.++++.+|+++|..||.|..|.|.+++.||.++|||||.|.+.++|.+||..|||.-+..--|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 013716 185 TK 186 (437)
Q Consensus 185 ~~ 186 (437)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 75
No 58
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=9.4e-16 Score=126.27 Aligned_cols=77 Identities=34% Similarity=0.689 Sum_probs=71.1
Q ss_pred CCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
-++|||++|+|.++.+.|+++|++||.|+++.++.|+.||+||||+||+|++.++|.+|++. .+-.|.||+..|..+
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLA 88 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchh
Confidence 35799999999999999999999999999999999999999999999999999999999965 566889998877665
No 59
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.61 E-value=4.1e-15 Score=104.84 Aligned_cols=70 Identities=49% Similarity=0.851 Sum_probs=65.2
Q ss_pred EEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 013716 109 VFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (437)
Q Consensus 109 l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 179 (437)
|||+|||+++++++|+++|+.||.|..+++..++. ++++|+|||+|.+.++|.+|+..+++..|.|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 99999999999999999999999998999999874
No 60
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=5e-15 Score=122.41 Aligned_cols=80 Identities=26% Similarity=0.541 Sum_probs=76.5
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 281 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
...+|.|.||+.++++.+|+++|.+||.|.+|.|.+++.+. ||||||.|.+.++|.+||..|||+-++.-.|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 44789999999999999999999999999999999999877 9999999999999999999999999999999999998
Q ss_pred CC
Q 013716 359 PQ 360 (437)
Q Consensus 359 ~~ 360 (437)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 76
No 61
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=4.1e-15 Score=123.90 Aligned_cols=167 Identities=27% Similarity=0.443 Sum_probs=129.2
Q ss_pred CeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecccc
Q 013716 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (437)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~ 186 (437)
..|||++||+.+.+.+|..||..||.|..|.+. .||+||+|.+..+|..|+..|++..|.|-.+.|.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 359999999999999999999999999999874 358899999999999999999999999888777777532
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCeeee
Q 013716 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (437)
Q Consensus 187 ~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~ 266 (437)
..- .+.+.+ + ++.. |
T Consensus 74 ~~~------------------------------------~g~~~~-g-------------------------~r~~---~ 88 (216)
T KOG0106|consen 74 RRG------------------------------------RGRPRG-G-------------------------DRRS---D 88 (216)
T ss_pred ccc------------------------------------cCCCCC-C-------------------------Cccc---h
Confidence 110 000000 0 0000 0
Q ss_pred cCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCce
Q 013716 267 ADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346 (437)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 346 (437)
.... .....+...|+|.|++..+.+.+|..+|.++|.+....+ .++++||+|.+.++|.+|+..|++..
T Consensus 89 ~~~~-----~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~------~~~~~~v~Fs~~~da~ra~~~l~~~~ 157 (216)
T KOG0106|consen 89 SRRY-----RPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA------RRNFAFVEFSEQEDAKRALEKLDGKK 157 (216)
T ss_pred hhcc-----CCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh------hccccceeehhhhhhhhcchhccchh
Confidence 0000 111133468999999999999999999999999965555 23689999999999999999999999
Q ss_pred eCCeEEEEEec
Q 013716 347 IDGQVLEVVLA 357 (437)
Q Consensus 347 i~g~~l~v~~a 357 (437)
+.++.|++...
T Consensus 158 ~~~~~l~~~~~ 168 (216)
T KOG0106|consen 158 LNGRRISVEKN 168 (216)
T ss_pred hcCceeeeccc
Confidence 99999999443
No 62
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=5e-15 Score=109.62 Aligned_cols=82 Identities=23% Similarity=0.392 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
...++||||+||++.+||++|.++|+++|.|..|.+-.++.+..+-|||||+|-+.++|..|+..+++..+..+.|++.+
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 34789999999999999999999999999999999988999999999999999999999999999999999999999987
Q ss_pred cc
Q 013716 183 SE 184 (437)
Q Consensus 183 ~~ 184 (437)
.-
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 53
No 63
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.57 E-value=1.7e-13 Score=122.35 Aligned_cols=171 Identities=19% Similarity=0.360 Sum_probs=142.2
Q ss_pred cccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCeee
Q 013716 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265 (437)
Q Consensus 186 ~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 265 (437)
.+.+||.|+|+++..++|+.+|....-.|+.|.++.| ..++++++|.|+|++++.+++|+..|+. +.+.++.+.++
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D--~~GK~rGcavVEFk~~E~~qKa~E~lnk--~~~~GR~l~vK 119 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD--ESGKARGCAVVEFKDPENVQKALEKLNK--YEVNGRELVVK 119 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc--cCCCcCCceEEEeeCHHHHHHHHHHhhh--ccccCceEEEe
Confidence 4569999999999999999999986555999999998 6799999999999999999999999965 47778877776
Q ss_pred ecCCCCC---------------------------------------------CCC-------------------------
Q 013716 266 WADPKST---------------------------------------------PDH------------------------- 275 (437)
Q Consensus 266 ~~~~~~~---------------------------------------------~~~------------------------- 275 (437)
.-..... ...
T Consensus 120 Ed~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl 199 (608)
T KOG4212|consen 120 EDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGL 199 (608)
T ss_pred ccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccc
Confidence 5433100 000
Q ss_pred ---------cccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCc
Q 013716 276 ---------SAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKY 345 (437)
Q Consensus 276 ---------~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~ 345 (437)
....+...++||.||.+.+....|++.|.-.|.|+.|.+-.++.+. +|||.++|.++-.|.+||..|++.
T Consensus 200 ~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 200 SASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred hhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccC
Confidence 0001113579999999999999999999999999999999899888 999999999999999999999988
Q ss_pred eeCCeEEEEEeccCC
Q 013716 346 EIDGQVLEVVLAKPQ 360 (437)
Q Consensus 346 ~i~g~~l~v~~a~~~ 360 (437)
-+..++.++++.+-.
T Consensus 280 g~~~~~~~~Rl~~~~ 294 (608)
T KOG4212|consen 280 GLFDRRMTVRLDRIP 294 (608)
T ss_pred CCccccceeeccccc
Confidence 888899999986543
No 64
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.56 E-value=1.6e-14 Score=123.74 Aligned_cols=76 Identities=20% Similarity=0.336 Sum_probs=70.9
Q ss_pred CCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 013716 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (437)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 185 (437)
.++|||+|||+.+|+++|+++|+.||.|.+|+|+++.. ++|||||+|.+.++|..|| .|++..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999998853 5799999999999999999 6999999999999999763
No 65
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.56 E-value=1.8e-14 Score=123.39 Aligned_cols=77 Identities=19% Similarity=0.321 Sum_probs=70.9
Q ss_pred cceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCC
Q 013716 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (437)
Q Consensus 282 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (437)
.++|||+|||+.+++++|+++|+.||.|.+|.|+.++. .+|||||+|.+.++|..||. |||..|.|+.|+|.++..-
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE-RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 36999999999999999999999999999999988764 36999999999999999996 9999999999999998643
No 66
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.56 E-value=1.6e-14 Score=101.85 Aligned_cols=69 Identities=33% Similarity=0.654 Sum_probs=63.3
Q ss_pred EEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEE
Q 013716 285 LYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLE 353 (437)
Q Consensus 285 l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 353 (437)
|+|+|||+.+++++|+++|+.||.|..+.+..++.+. +++|||+|.+.++|.+|+..+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999887755 99999999999999999999999999999985
No 67
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.55 E-value=2.8e-14 Score=101.49 Aligned_cols=78 Identities=26% Similarity=0.499 Sum_probs=72.3
Q ss_pred cceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCC
Q 013716 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (437)
Q Consensus 282 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (437)
.+.|||+|||+.+|.+++.++|.+||.|..|+|-..+.+ +|.|||.|++..+|.+|+..|+|..+.++.|.|-|..+.
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T-rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET-RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc-CceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 478999999999999999999999999999999877755 699999999999999999999999999999999987654
No 68
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=2e-14 Score=106.49 Aligned_cols=78 Identities=24% Similarity=0.417 Sum_probs=73.2
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 281 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
.+++|||+||++.++++.|.++|+++|.|..|.+-.++.++ -|||||+|-+.++|..|++-++|..++.++|+|.|..
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 34799999999999999999999999999999998888766 8999999999999999999999999999999999974
No 69
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=4.6e-14 Score=111.46 Aligned_cols=77 Identities=22% Similarity=0.513 Sum_probs=69.1
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 281 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
..++|||+|||.++.+.+|.++|.+||.|..|.+-.... .-+||||+|+++.+|..||..-+|..++|+.|+|.|+.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g-~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG-PPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC-CCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 457899999999999999999999999999998754332 24799999999999999999999999999999999985
No 70
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.54 E-value=1.1e-15 Score=120.29 Aligned_cols=86 Identities=29% Similarity=0.573 Sum_probs=80.0
Q ss_pred hcCCCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 013716 99 LLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (437)
Q Consensus 99 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 178 (437)
+...-..+.-|||+|||+.+|+-+|...|++||.|+.|.|++|+.||+|+||||+.|.+..+..-|+..|||..|.||.|
T Consensus 28 WH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRti 107 (219)
T KOG0126|consen 28 WHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTI 107 (219)
T ss_pred hhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeE
Confidence 34444577889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecc
Q 013716 179 RCSLSE 184 (437)
Q Consensus 179 ~v~~~~ 184 (437)
+|....
T Consensus 108 rVDHv~ 113 (219)
T KOG0126|consen 108 RVDHVS 113 (219)
T ss_pred Eeeecc
Confidence 998654
No 71
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.52 E-value=1.2e-13 Score=126.81 Aligned_cols=168 Identities=35% Similarity=0.616 Sum_probs=121.0
Q ss_pred CCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 013716 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (437)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 185 (437)
.++|||+|||+.+|+++|+++|..||.|..+++..++.++.++|||||+|.+.++|..|+..+++..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 68999999999999999999999999999999999988899999999999999999999999999999999999998753
Q ss_pred -cccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCee
Q 013716 186 -KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (437)
Q Consensus 186 -~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (437)
.... ...... .. .......
T Consensus 195 ~~~~~-----------------------------------~~~~~~----------~~-----~~~~~~~---------- 214 (306)
T COG0724 195 ASQPR-----------------------------------SELSNN----------LD-----ASFAKKL---------- 214 (306)
T ss_pred ccccc-----------------------------------cccccc----------cc-----hhhhccc----------
Confidence 0000 000000 00 0000000
Q ss_pred eecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHH
Q 013716 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVK 340 (437)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~ 340 (437)
.............+++.+++..++...+...|..+|.+..+.+....... ..+.++.+.....+..++.
T Consensus 215 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 215 -------SRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred -------cccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 00001111334689999999999999999999999999877776665443 3333444444444444443
No 72
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=6.1e-14 Score=99.78 Aligned_cols=80 Identities=24% Similarity=0.362 Sum_probs=73.1
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
..+.|||+|||+++|.+++.++|.+||.|..|+|-.. ...+|.|||.|.+..+|++|+..|+|..+.++.+.|-+..
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~---k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT---KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccceEEEEecCc---cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 4678999999999999999999999999999999655 4568999999999999999999999999999999999887
Q ss_pred ccc
Q 013716 185 TKN 187 (437)
Q Consensus 185 ~~~ 187 (437)
+..
T Consensus 94 ~~~ 96 (124)
T KOG0114|consen 94 PED 96 (124)
T ss_pred HHH
Confidence 653
No 73
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=3.6e-14 Score=120.69 Aligned_cols=82 Identities=28% Similarity=0.477 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
.+=+||||.-|+++++|..|+..|..||.|..|+|+.+..||+++|||||+|....+...|.+..+|..|.|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cc
Q 013716 184 ET 185 (437)
Q Consensus 184 ~~ 185 (437)
..
T Consensus 179 Rg 180 (335)
T KOG0113|consen 179 RG 180 (335)
T ss_pred cc
Confidence 53
No 74
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=1.2e-13 Score=113.92 Aligned_cols=77 Identities=25% Similarity=0.471 Sum_probs=69.8
Q ss_pred cceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 282 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
.++|||++|+|.+..+.|+++|.+||.|..+.|+.++.+. ||||||+|.+.++|.+|+.-. +-.|+||+..|++|.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccccccccchhhh
Confidence 3789999999999999999999999999999888887655 999999999999999999853 4589999999999865
No 75
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.52 E-value=7.1e-14 Score=117.61 Aligned_cols=78 Identities=21% Similarity=0.326 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
+.+.||||+||++.+|+++|++||+.||.|.+|+|+++ +..+++|||+|.++++|..|+ .|+|..|.++.|.|..+
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D---~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS---GEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC---CCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 45689999999999999999999999999999999998 456689999999999999999 89999999999999887
Q ss_pred cc
Q 013716 184 ET 185 (437)
Q Consensus 184 ~~ 185 (437)
..
T Consensus 79 ~~ 80 (243)
T PLN03121 79 GQ 80 (243)
T ss_pred cc
Confidence 64
No 76
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.52 E-value=5.3e-14 Score=113.23 Aligned_cols=81 Identities=25% Similarity=0.490 Sum_probs=76.1
Q ss_pred cceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 282 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
...|.|-||.+.++.++|+.+|.+||.|..|.|+++..++ +|||||.|....+|+.|+.+|+|..|+|+.|+|++|+-
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 3689999999999999999999999999999999999887 99999999999999999999999999999999999875
Q ss_pred CCC
Q 013716 360 QTD 362 (437)
Q Consensus 360 ~~~ 362 (437)
...
T Consensus 93 gr~ 95 (256)
T KOG4207|consen 93 GRP 95 (256)
T ss_pred CCC
Confidence 443
No 77
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=4.6e-14 Score=121.58 Aligned_cols=80 Identities=26% Similarity=0.496 Sum_probs=74.6
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
..++|+|.|||+..-+.||+.+|.+||.|.+|.|+-+. .-||||+||+|.+.++|.+|.++|||..+.||+|.|..+.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 45679999999999999999999999999999999876 4699999999999999999999999999999999999887
Q ss_pred cc
Q 013716 185 TK 186 (437)
Q Consensus 185 ~~ 186 (437)
..
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 54
No 78
>PLN03213 repressor of silencing 3; Provisional
Probab=99.50 E-value=6.8e-14 Score=126.73 Aligned_cols=77 Identities=21% Similarity=0.287 Sum_probs=71.1
Q ss_pred cceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCH--HHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAER--SSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 282 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~--~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
..+|||+||++.+++++|+.+|+.||.|.+|.|++.+. ||||||+|.+. .++.+||..|||..|.|+.|+|..|++
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 46899999999999999999999999999999995543 89999999987 789999999999999999999999985
Q ss_pred C
Q 013716 360 Q 360 (437)
Q Consensus 360 ~ 360 (437)
.
T Consensus 88 ~ 88 (759)
T PLN03213 88 H 88 (759)
T ss_pred H
Confidence 4
No 79
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=3.1e-13 Score=106.16 Aligned_cols=78 Identities=19% Similarity=0.373 Sum_probs=72.1
Q ss_pred cceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCCC
Q 013716 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (437)
Q Consensus 282 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 361 (437)
.++|||+||+..+++.+|..+|..||.|..|-|...+. |||||+|+++.+|..|+..|+|..|.|..|+|.++....
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP---GfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP---GFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC---CceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 47899999999999999999999999999999988654 799999999999999999999999999999999987554
Q ss_pred C
Q 013716 362 D 362 (437)
Q Consensus 362 ~ 362 (437)
.
T Consensus 87 r 87 (195)
T KOG0107|consen 87 R 87 (195)
T ss_pred c
Confidence 4
No 80
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.50 E-value=2.6e-14 Score=114.94 Aligned_cols=80 Identities=30% Similarity=0.509 Sum_probs=76.9
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
--.+|.|.||.+-+|.++|+.+|++||.|.+|.|.++..|+.++|||||.|....+|+.|+++|+|.+|.|+.|+|+.++
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999998876
No 81
>PLN03213 repressor of silencing 3; Provisional
Probab=99.50 E-value=6.9e-14 Score=126.71 Aligned_cols=78 Identities=23% Similarity=0.489 Sum_probs=72.1
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCH--HHHHHHHHHhCCCccCCeEEEEee
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSK--EFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~--~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
...+|||+||++.+|+++|+.+|..||.|.+|.|++ .|| ||||||+|.+. .++.+||..|||..|.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 346899999999999999999999999999999994 457 99999999987 789999999999999999999999
Q ss_pred cccc
Q 013716 183 SETK 186 (437)
Q Consensus 183 ~~~~ 186 (437)
+++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 9865
No 82
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=1.3e-13 Score=108.27 Aligned_cols=76 Identities=29% Similarity=0.493 Sum_probs=70.7
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
-.+.|||+||+..+++.+|..+|..||.|..|+|-+.+ -|||||+|.++.+|..|+..|+|..|.|..|+|.++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 36789999999999999999999999999999997754 6899999999999999999999999999999999886
Q ss_pred c
Q 013716 185 T 185 (437)
Q Consensus 185 ~ 185 (437)
-
T Consensus 84 G 84 (195)
T KOG0107|consen 84 G 84 (195)
T ss_pred C
Confidence 3
No 83
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=1.1e-12 Score=111.87 Aligned_cols=83 Identities=24% Similarity=0.431 Sum_probs=76.6
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
.+-++|||.-|++.+++..|+..|+.||.|..|+|++++.+. +|||||+|++..+...|.+..+|..|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 556899999999999999999999999999999999997654 999999999999999999999999999999999997
Q ss_pred cCCCC
Q 013716 358 KPQTD 362 (437)
Q Consensus 358 ~~~~~ 362 (437)
..+..
T Consensus 179 RgRTv 183 (335)
T KOG0113|consen 179 RGRTV 183 (335)
T ss_pred ccccc
Confidence 65543
No 84
>smart00362 RRM_2 RNA recognition motif.
Probab=99.46 E-value=4.4e-13 Score=94.92 Aligned_cols=72 Identities=46% Similarity=0.803 Sum_probs=67.5
Q ss_pred eEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEe
Q 013716 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (437)
Q Consensus 108 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 181 (437)
+|||+|||..++.++|+++|.+||.|..+.+..+. +.++|+|||+|.+.+.|.+|+..+++..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 59999999999999999999999999999998876 7789999999999999999999999999999998863
No 85
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=8.5e-14 Score=113.01 Aligned_cols=86 Identities=27% Similarity=0.533 Sum_probs=78.8
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||++|...+++.-|...|-+||.|..|.++.+.... ||||||+|...++|.+||..||+..+.||.|+|+||
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 455899999999999999999999999999999999877544 999999999999999999999999999999999999
Q ss_pred cCCCCCCC
Q 013716 358 KPQTDKKT 365 (437)
Q Consensus 358 ~~~~~~~~ 365 (437)
+|..-+..
T Consensus 88 kP~kikeg 95 (298)
T KOG0111|consen 88 KPEKIKEG 95 (298)
T ss_pred CCccccCC
Confidence 98775543
No 86
>smart00362 RRM_2 RNA recognition motif.
Probab=99.45 E-value=7.2e-13 Score=93.80 Aligned_cols=72 Identities=28% Similarity=0.583 Sum_probs=66.3
Q ss_pred eEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013716 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (437)
Q Consensus 284 ~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 355 (437)
+|+|+|||..++.++|+.+|.+||.|..+.+.......+++|||+|.+.++|.+|+..+++..|.|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 589999999999999999999999999999988773238999999999999999999999999999999874
No 87
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.44 E-value=6.8e-13 Score=111.72 Aligned_cols=77 Identities=12% Similarity=0.104 Sum_probs=70.1
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 281 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
.+.+|||+||++.+|+++|+++|+.||.|.+|+|+++... ++||||+|.+.++|..|+. |+|..|.+++|.|..+..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et-~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEY-ACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCc-ceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 3479999999999999999999999999999999988532 6899999999999999995 999999999999988754
No 88
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=2.1e-13 Score=101.96 Aligned_cols=81 Identities=30% Similarity=0.520 Sum_probs=77.3
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
-.+-.|||.++...+|+++|.+.|..||.|..+.|..++.||..+|||.|+|.+.+.|++|+..+|+..|.|..|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 35668999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 013716 184 E 184 (437)
Q Consensus 184 ~ 184 (437)
-
T Consensus 150 F 150 (170)
T KOG0130|consen 150 F 150 (170)
T ss_pred E
Confidence 3
No 89
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=2.2e-13 Score=110.63 Aligned_cols=84 Identities=33% Similarity=0.602 Sum_probs=80.5
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
...+||||++|..++|+.-|...|-.||.|.+|.++.|..+++.||||||+|.-.++|..||..||...|.||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 013716 184 ETKN 187 (437)
Q Consensus 184 ~~~~ 187 (437)
+|.+
T Consensus 88 kP~k 91 (298)
T KOG0111|consen 88 KPEK 91 (298)
T ss_pred CCcc
Confidence 8754
No 90
>smart00360 RRM RNA recognition motif.
Probab=99.43 E-value=8.3e-13 Score=93.16 Aligned_cols=71 Identities=48% Similarity=0.863 Sum_probs=67.1
Q ss_pred EcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEe
Q 013716 111 IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (437)
Q Consensus 111 v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 181 (437)
|+|||..+++++|+.+|++||.|..+.+..++.++.++|+|||+|.+.+.|.+|+..+++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999988789999999999999999999999999999999998873
No 91
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.42 E-value=1.1e-12 Score=87.56 Aligned_cols=56 Identities=32% Similarity=0.554 Sum_probs=51.9
Q ss_pred HHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 299 IKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 299 L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
|+++|++||.|..|.+.+.+ +++|||+|.+.++|..|+..|||..|.|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999998877 489999999999999999999999999999999986
No 92
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.39 E-value=3.2e-12 Score=90.96 Aligned_cols=73 Identities=30% Similarity=0.590 Sum_probs=68.2
Q ss_pred eEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEe
Q 013716 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (437)
Q Consensus 284 ~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 356 (437)
+|+|+|||..+++++|+++|+.||.|..+.+.....+. +++|||+|.+.++|..|+..+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999877655 79999999999999999999999999999999875
No 93
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=1.2e-12 Score=98.01 Aligned_cols=82 Identities=16% Similarity=0.289 Sum_probs=76.0
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
.....|||.++...+++++|.+.|..||.|..|++-.+..+. +|||+|+|++..+|++|+..+||..|-|..|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 446899999999999999999999999999999998887666 999999999999999999999999999999999998
Q ss_pred cCCC
Q 013716 358 KPQT 361 (437)
Q Consensus 358 ~~~~ 361 (437)
-.+.
T Consensus 150 Fv~g 153 (170)
T KOG0130|consen 150 FVKG 153 (170)
T ss_pred EecC
Confidence 7553
No 94
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=1e-13 Score=109.37 Aligned_cols=76 Identities=21% Similarity=0.408 Sum_probs=72.1
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
.-|||+|||+.+|+-+|.-+|++||.|+.|.+++++.+. +||||+.|++..+-..|+..|||..|.||.|+|.-..
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 579999999999999999999999999999999998776 9999999999999999999999999999999998654
No 95
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.38 E-value=4.1e-12 Score=90.40 Aligned_cols=74 Identities=47% Similarity=0.846 Sum_probs=68.8
Q ss_pred eEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 108 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
+|+|+|||+.+++++|+++|+.||.|..+.+..+..+ .++|+|||+|.+.++|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988763 7799999999999999999999999999999998863
No 96
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=1.2e-13 Score=133.52 Aligned_cols=231 Identities=17% Similarity=0.221 Sum_probs=189.5
Q ss_pred CCCeEEEcCCCcCCCHH-HHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 105 NGSEVFIGGLPKDASEE-DLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~-~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
..+.+.+.|+.+..... ..+..|+.+|.|..|++......-....++++.+....+++.|. ...+..+.++.+.|..+
T Consensus 570 ~~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat-~pa~~~~a~~~~av~~a 648 (881)
T KOG0128|consen 570 ERREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESAT-VPAGGALANRSAAVGLA 648 (881)
T ss_pred hhhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcc-cccccccCCccccCCCC
Confidence 44567788887766555 57888999999999998763332333338999999999999999 56888888888888776
Q ss_pred ccc----------------ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHH
Q 013716 184 ETK----------------NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSR 247 (437)
Q Consensus 184 ~~~----------------~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~ 247 (437)
.+. .++|++||+..+...+|...|..++. +..+++... .+.++-+|+||+.|.....+.+|+
T Consensus 649 d~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~-~e~vqi~~h-~n~~~~rG~~Y~~F~~~~~~~aaV 726 (881)
T KOG0128|consen 649 DAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGT-IEVVQIVIH-KNEKRFRGKAYVEFLKPEHAGAAV 726 (881)
T ss_pred CchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccch-hhhHHHHHH-hhccccccceeeEeecCCchhhhh
Confidence 643 46899999999999999999999986 766666622 567888999999999999999888
Q ss_pred HHHhccCcccCCCCCeeeecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-ccEEE
Q 013716 248 QKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGF 326 (437)
Q Consensus 248 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-~g~af 326 (437)
.......+ + ...|+|.|+|+..|.+.|+.+|+.+|.++.++++..+.++ +|.||
T Consensus 727 ~f~d~~~~---g----------------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~ 781 (881)
T KOG0128|consen 727 AFRDSCFF---G----------------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKAR 781 (881)
T ss_pred hhhhhhhh---h----------------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhcccccccee
Confidence 75433211 1 2479999999999999999999999999999999999988 99999
Q ss_pred EEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCCCCC
Q 013716 327 IHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363 (437)
Q Consensus 327 V~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~~ 363 (437)
|.|.+..+|.+++....+..+.-+.+.|..+.|...+
T Consensus 782 v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~~K 818 (881)
T KOG0128|consen 782 VDYNTEADASRKVASVDVAGKRENNGEVQVSNPERDK 818 (881)
T ss_pred ccCCCcchhhhhcccchhhhhhhcCccccccCCcccc
Confidence 9999999999999999988888888888888774443
No 97
>smart00360 RRM RNA recognition motif.
Probab=99.36 E-value=3.2e-12 Score=90.07 Aligned_cols=69 Identities=32% Similarity=0.623 Sum_probs=63.2
Q ss_pred EecCCCCCCHHHHHHHHhccCCeeEEEeCCCCC-CC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013716 287 VKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (437)
Q Consensus 287 V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 355 (437)
|+|||..+++++|+.+|+.||.|..+.+...+. +. +|+|||+|.+.++|.+|+..+++..+.|+.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 579999999999999999999999999988764 33 8999999999999999999999999999999874
No 98
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.35 E-value=2e-12 Score=120.48 Aligned_cols=80 Identities=36% Similarity=0.720 Sum_probs=77.8
Q ss_pred CeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecccc
Q 013716 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (437)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~ 186 (437)
+.|||+|||+++++++|..+|+..|.|.+++++.|+.||+++||||++|.+.+.|.+|++.||+..+.||+|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999998754
No 99
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=4.2e-12 Score=117.62 Aligned_cols=73 Identities=26% Similarity=0.464 Sum_probs=65.6
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 180 (437)
.-+.++|+|-|||..+++++|+.+|+.||.|..|+.-+ ..+|.+||+|-+...|++|+++|++..+.|+.|..
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 34678999999999999999999999999999977644 45789999999999999999999999999998883
No 100
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.32 E-value=2.6e-12 Score=101.71 Aligned_cols=79 Identities=27% Similarity=0.423 Sum_probs=74.8
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
.+..+|||+||+..++++.|+++|-+.|.|..++|++++.+. +|||||+|.+.++|.-|++-||...+.||+|+|+.+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 445799999999999999999999999999999999998766 999999999999999999999999999999999999
Q ss_pred c
Q 013716 358 K 358 (437)
Q Consensus 358 ~ 358 (437)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 7
No 101
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.31 E-value=4.9e-11 Score=114.30 Aligned_cols=79 Identities=23% Similarity=0.492 Sum_probs=74.0
Q ss_pred cceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCCC
Q 013716 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (437)
Q Consensus 282 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 361 (437)
++||||++|+..+++.+|.++|..||.|.+|.+.... |||||++....+|.+|+.+|++..+.++.|+|.|+..+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R----~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR----GCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC----ceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 5899999999999999999999999999999997765 899999999999999999999999999999999998776
Q ss_pred CCC
Q 013716 362 DKK 364 (437)
Q Consensus 362 ~~~ 364 (437)
.+.
T Consensus 497 ~ks 499 (894)
T KOG0132|consen 497 PKS 499 (894)
T ss_pred cch
Confidence 554
No 102
>smart00361 RRM_1 RNA recognition motif.
Probab=99.29 E-value=1.5e-11 Score=86.04 Aligned_cols=61 Identities=23% Similarity=0.463 Sum_probs=55.5
Q ss_pred HHHHHHhhc----ccCCeEEEE-EeecCCC--CCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 013716 120 EEDLRDLCE----PIGDVFEVR-LMKDKES--GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (437)
Q Consensus 120 ~~~l~~~f~----~~G~i~~v~-~~~~~~~--~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 180 (437)
+++|+++|+ +||.|.+|. ++.++.+ +.++|||||+|.+.++|.+|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 568889998 999999996 7777666 899999999999999999999999999999999976
No 103
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.27 E-value=2.5e-11 Score=80.99 Aligned_cols=56 Identities=38% Similarity=0.705 Sum_probs=50.7
Q ss_pred HHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 123 LRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 123 l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
|+++|++||.|..+++.+.. +++|||+|.+.++|.+|++.||+..+.|++|+|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999997653 589999999999999999999999999999999875
No 104
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.26 E-value=5e-11 Score=110.56 Aligned_cols=79 Identities=24% Similarity=0.516 Sum_probs=67.4
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCC-CCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCC
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~-~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (437)
..|||+|||.+++..+|+++|..||.|+...|.... .++ .+||||+|.+..++..||.+ +-..|++++|.|...++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 459999999999999999999999999987776544 222 48999999999999999996 688999999999987654
Q ss_pred CC
Q 013716 361 TD 362 (437)
Q Consensus 361 ~~ 362 (437)
..
T Consensus 368 ~~ 369 (419)
T KOG0116|consen 368 FR 369 (419)
T ss_pred cc
Confidence 43
No 105
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=3.3e-10 Score=104.35 Aligned_cols=170 Identities=20% Similarity=0.342 Sum_probs=113.6
Q ss_pred CCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCC--CCccc---EEEEEecCHHHHHHHHHHhCCCccCCe
Q 013716 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES--GESKG---FAFVSFRSKEFAKKAIDELHSKELKGK 176 (437)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~--~~~~g---~afV~f~~~~~A~~a~~~l~~~~~~g~ 176 (437)
.+.-++.|||++||++++++.|...|..||.+.--.-.+.... -.++| |+|+.|.++.++...+.++.- .-.+-
T Consensus 255 ~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~-~~~~~ 333 (520)
T KOG0129|consen 255 SPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE-GEGNY 333 (520)
T ss_pred ccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh-cccce
Confidence 3446788999999999999999999999998743332111111 13566 999999999999888876543 11122
Q ss_pred EEEEeeccccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcc
Q 013716 177 TIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFK 256 (437)
Q Consensus 177 ~i~v~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~ 256 (437)
.+.|...+.+.+ .|. |.-+.+-.- -||
T Consensus 334 yf~vss~~~k~k-~VQ---------------------IrPW~laDs----------~fv--------------------- 360 (520)
T KOG0129|consen 334 YFKVSSPTIKDK-EVQ---------------------IRPWVLADS----------DFV--------------------- 360 (520)
T ss_pred EEEEecCccccc-cee---------------------EEeeEeccc----------hhh---------------------
Confidence 222222221111 000 111111100 000
Q ss_pred cCCCCCeeeecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHh-ccCCeeEEEeCCCCCCC--ccEEEEEeCCHH
Q 013716 257 LDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQ-RHGEVTKVVMPPGKSGK--RDFGFIHYAERS 333 (437)
Q Consensus 257 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~-~~G~v~~v~i~~~~~~~--~g~afV~f~~~~ 333 (437)
.. ......+.+||||++||..++.++|..+|. -||.|..+-|..|..-+ +|-|-|+|.+..
T Consensus 361 ~d----------------~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqq 424 (520)
T KOG0129|consen 361 LD----------------HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQ 424 (520)
T ss_pred hc----------------cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccH
Confidence 00 011124558999999999999999999999 59999999999885444 999999999999
Q ss_pred HHHHHHHh
Q 013716 334 SALKAVKD 341 (437)
Q Consensus 334 ~A~~A~~~ 341 (437)
+=.+||.+
T Consensus 425 sYi~AIsa 432 (520)
T KOG0129|consen 425 AYIKAISA 432 (520)
T ss_pred HHHHHHhh
Confidence 99999974
No 106
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.26 E-value=3.3e-11 Score=112.49 Aligned_cols=81 Identities=23% Similarity=0.450 Sum_probs=76.0
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCC
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (437)
+.|||+|||+.++++.|..+|+..|.|..+++..|+.+. |||||++|.+.++|.+|++.|||..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 689999999999999999999999999999999888765 999999999999999999999999999999999999765
Q ss_pred CCC
Q 013716 361 TDK 363 (437)
Q Consensus 361 ~~~ 363 (437)
..+
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 554
No 107
>smart00361 RRM_1 RNA recognition motif.
Probab=99.24 E-value=3.3e-11 Score=84.27 Aligned_cols=60 Identities=22% Similarity=0.332 Sum_probs=50.9
Q ss_pred HHHHHHHHh----ccCCeeEEE-eCCCC-C--CC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013716 296 TEKIKELFQ----RHGEVTKVV-MPPGK-S--GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (437)
Q Consensus 296 ~~~L~~~f~----~~G~v~~v~-i~~~~-~--~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 355 (437)
+++|+++|+ +||.|.+|. |..++ . ++ +|||||+|.+.++|.+|+..|||+.+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 567888888 999999885 44333 2 33 9999999999999999999999999999999873
No 108
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.24 E-value=1.1e-11 Score=109.07 Aligned_cols=143 Identities=22% Similarity=0.320 Sum_probs=113.7
Q ss_pred CeEEEcCCCcCCCHHHHHHhhccc----CCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEe-
Q 013716 107 SEVFIGGLPKDASEEDLRDLCEPI----GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS- 181 (437)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~----G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~- 181 (437)
-.|.+++||+++|+.++..||..- |....|.++..++ |+..|-|||.|..++.|..||.. |...+..|.|.+.
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd-grpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFR 239 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD-GRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFR 239 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC-CCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 457899999999999999999632 3456777777665 99999999999999999999954 5444444433332
Q ss_pred ------------------------------------eccccccccccCCCCCCCHHHHHHHHHhhCCceeE--EEEeeCC
Q 013716 182 ------------------------------------LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVET--IELIKDP 223 (437)
Q Consensus 182 ------------------------------------~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~--~~~~~d~ 223 (437)
..+.+.+|.+++||+..+.++|..+|..|...|.. +.++-+
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N- 318 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN- 318 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-
Confidence 23345688999999999999999999999865655 666664
Q ss_pred CCCCCCccEEEEEecChHHHHHHHHHHhcc
Q 013716 224 QNPSRNRGFSFVLYYNNACADYSRQKMLNA 253 (437)
Q Consensus 224 ~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 253 (437)
..|+..|-|||+|.+.+.|..|..+.+++
T Consensus 319 -~qGrPSGeAFIqm~nae~a~aaaqk~hk~ 347 (508)
T KOG1365|consen 319 -GQGRPSGEAFIQMRNAERARAAAQKCHKK 347 (508)
T ss_pred -CCCCcChhhhhhhhhhHHHHHHHHHHHHh
Confidence 77899999999999999999888876654
No 109
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.23 E-value=1.1e-10 Score=110.45 Aligned_cols=163 Identities=13% Similarity=0.069 Sum_probs=111.9
Q ss_pred cccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCeeeecCC
Q 013716 190 FIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADP 269 (437)
Q Consensus 190 ~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~ 269 (437)
.+.+++......+++++|...- +....|..+ .-.+...|.++|.|.....+.+|++.-. ...-.+.+.+.-+..
T Consensus 315 ~~~gm~fn~~~nd~rkfF~g~~--~~~~~l~~~-~v~~~~tG~~~v~f~~~~~~q~A~~rn~---~~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 315 NYKGMEFNNDFNDGRKFFPGRN--AQSTDLSEN-RVAPPQTGRKTVMFTPQAPFQNAFTRNP---SDDVNRPFQTGPPGN 388 (944)
T ss_pred eecccccccccchhhhhcCccc--ccccchhhh-hcCCCcCCceEEEecCcchHHHHHhcCc---hhhhhcceeecCCCc
Confidence 3466777888889999987654 444444443 2223347899999999999999976421 111112111111000
Q ss_pred C---------------------------------CCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeE-EEeC
Q 013716 270 K---------------------------------STPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMP 315 (437)
Q Consensus 270 ~---------------------------------~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~-v~i~ 315 (437)
. ..........-+.+|||..||..++...+.++|...-.|++ |.|.
T Consensus 389 ~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt 468 (944)
T KOG4307|consen 389 LGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELT 468 (944)
T ss_pred cccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEec
Confidence 0 00000111223578999999999999999999998667765 8888
Q ss_pred CCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 316 PGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 316 ~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
+...++ ++.|||.|...+++..|...-+.+.++.|.|+|.-..
T Consensus 469 ~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~ 512 (944)
T KOG4307|consen 469 RLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIA 512 (944)
T ss_pred cCCcccccchhhheeccccccchhhhcccccccCceEEEeechh
Confidence 877777 8999999999999999998778888888999997543
No 110
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.20 E-value=8.1e-11 Score=107.97 Aligned_cols=78 Identities=33% Similarity=0.652 Sum_probs=72.9
Q ss_pred cceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCC-CCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 282 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~-~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
..+|||+|||+.+++++|+++|..||.|..|.+..++ .+. +|||||+|.+.++|..|+..+++..|.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 4899999999999999999999999999999999886 344 99999999999999999999999999999999999764
No 111
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=1.9e-11 Score=102.54 Aligned_cols=87 Identities=26% Similarity=0.507 Sum_probs=81.5
Q ss_pred CCCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 013716 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (437)
Q Consensus 101 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 180 (437)
..-+++|+|||-.||.+....+|..+|-.||.|++.++..|+.|+.||.|+||.|.++.+|+.||..|||..|.=++|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeccccc
Q 013716 181 SLSETKN 187 (437)
Q Consensus 181 ~~~~~~~ 187 (437)
...+++.
T Consensus 360 QLKRPkd 366 (371)
T KOG0146|consen 360 QLKRPKD 366 (371)
T ss_pred hhcCccc
Confidence 8777653
No 112
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.18 E-value=3.2e-11 Score=102.56 Aligned_cols=73 Identities=22% Similarity=0.568 Sum_probs=69.1
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCCC
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 361 (437)
.+|||+|||..+++.+|+.+|++||+|..|.|+++ ||||..++...|..||+.|||.+|+|..|.|.-++.+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 47999999999999999999999999999999875 79999999999999999999999999999999998873
No 113
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.17 E-value=9e-11 Score=97.02 Aligned_cols=78 Identities=22% Similarity=0.465 Sum_probs=71.5
Q ss_pred ceEEEecCCCCCCHHHHHH----HHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 283 KALYVKNIPDNTSTEKIKE----LFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~----~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
.+|||.||...+..++|+. +|++||.|..|...... + ||.|||.|.+.+.|..|+..|+|..|-|++++|.||
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~--KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA 87 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP--KMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYA 87 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC--CccCceEEEecChhHHHHHHHHhcCCcccCchhheecc
Confidence 4999999999999999888 99999999999887654 4 899999999999999999999999999999999999
Q ss_pred cCCCC
Q 013716 358 KPQTD 362 (437)
Q Consensus 358 ~~~~~ 362 (437)
+.+.-
T Consensus 88 ~s~sd 92 (221)
T KOG4206|consen 88 KSDSD 92 (221)
T ss_pred cCccc
Confidence 86653
No 114
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=99.15 E-value=1.1e-10 Score=104.25 Aligned_cols=178 Identities=22% Similarity=0.329 Sum_probs=134.8
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
..+++|++++.+.+.+.++..++..+|.+..+.+........++|++++.|...+.+..|+.......+.++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 46889999999999999999999999988888887777778999999999999999999995533234444433221111
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCee
Q 013716 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (437)
Q Consensus 185 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (437)
. +..+. .+
T Consensus 167 ~--------------------------------~~~~~-~n--------------------------------------- 174 (285)
T KOG4210|consen 167 R--------------------------------RGLRP-KN--------------------------------------- 174 (285)
T ss_pred c--------------------------------ccccc-cc---------------------------------------
Confidence 0 00000 00
Q ss_pred eecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhc
Q 013716 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDT 342 (437)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l 342 (437)
.............++|+||++.+++++|+.+|..+|.|..++++....+. +|||||.|.+...+..++..
T Consensus 175 -------~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~- 246 (285)
T KOG4210|consen 175 -------KLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND- 246 (285)
T ss_pred -------hhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-
Confidence 00000000112345599999999999999999999999999999888766 99999999999999999987
Q ss_pred CCceeCCeEEEEEeccCCCC
Q 013716 343 EKYEIDGQVLEVVLAKPQTD 362 (437)
Q Consensus 343 ~g~~i~g~~l~v~~a~~~~~ 362 (437)
+.+.+.++++.|.+..+...
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 247 QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred ccCcccCcccccccCCCCcc
Confidence 88899999999999876543
No 115
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.15 E-value=1.6e-10 Score=93.86 Aligned_cols=83 Identities=28% Similarity=0.492 Sum_probs=76.3
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhccc-CCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPI-GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~-G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
.....++|..||.-+-+.+|..+|.+| |.|..+++-+++.||.|+|||||+|.+++.|.-|.+.||+..|.++-|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 355679999999999999999999888 7888899889999999999999999999999999999999999999999887
Q ss_pred cccc
Q 013716 183 SETK 186 (437)
Q Consensus 183 ~~~~ 186 (437)
-.+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 6654
No 116
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=99.14 E-value=4e-10 Score=106.71 Aligned_cols=74 Identities=18% Similarity=0.287 Sum_probs=66.8
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCCee-EEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEe
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHGEVT-KVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~-~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 356 (437)
+.|.+.|+|++++-++|.+||..|-.+- +|++.++..+. +|-|.|-|++.++|.+|...|+++.|..|+|.|.+
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 5799999999999999999999996543 67777777777 99999999999999999999999999999999875
No 117
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=7.3e-11 Score=102.98 Aligned_cols=84 Identities=21% Similarity=0.464 Sum_probs=79.7
Q ss_pred CCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEe
Q 013716 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (437)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 181 (437)
..++...|||..|.+-+|.++|.-+|+.||+|.+|.++++..||-+..||||+|.+.+++++|.-.|.+..|..+.|.|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccc
Q 013716 182 LSET 185 (437)
Q Consensus 182 ~~~~ 185 (437)
+++.
T Consensus 315 FSQS 318 (479)
T KOG0415|consen 315 FSQS 318 (479)
T ss_pred hhhh
Confidence 8864
No 118
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=3.4e-10 Score=106.31 Aligned_cols=162 Identities=25% Similarity=0.441 Sum_probs=125.6
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
.....|||++||..+++.++++++..||.+....++.+..+|.++||||.+|-++.....|+..|||+.+.+++|.|..+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 35567999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cccccc----------cccCCCC-----------------CCCH-------------HHHHHHHHhhCCceeEEEEeeC-
Q 013716 184 ETKNRL----------FIGNVPK-----------------NWTE-------------DEFRKVIEDVGPGVETIELIKD- 222 (437)
Q Consensus 184 ~~~~~l----------~v~nl~~-----------------~~~~-------------~~l~~~f~~~g~~i~~~~~~~d- 222 (437)
-..... -|..|+. -++. ++++.-+..||. |.+|.+.++
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~-v~~v~ipr~~ 445 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGA-VRSVEIPRPY 445 (500)
T ss_pred hccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCc-eeEEecCCCC
Confidence 532100 0111111 1222 233344667887 888888876
Q ss_pred CC-CCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCeeeecC
Q 013716 223 PQ-NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWAD 268 (437)
Q Consensus 223 ~~-~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~ 268 (437)
+. ......|..||+|.+.+++++|.+.|.+. ++.++.+...|..
T Consensus 446 ~~~~~~~G~GkVFVefas~ed~qrA~~~L~Gr--KF~nRtVvtsYyd 490 (500)
T KOG0120|consen 446 PDENPVPGTGKVFVEFADTEDSQRAMEELTGR--KFANRTVVASYYD 490 (500)
T ss_pred CCCCcCCCcccEEEEecChHHHHHHHHHccCc--eeCCcEEEEEecC
Confidence 22 22345678899999999999999999877 5567766665543
No 119
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=2.6e-10 Score=99.61 Aligned_cols=83 Identities=17% Similarity=0.329 Sum_probs=76.1
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
++.+.|||.-|.+.++.++|.-+|+.||.|..|.|+++..+. -.||||+|++.+++.+|.-+|++..|+.++|+|.|+
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 445799999999999999999999999999999999998765 779999999999999999999999999999999998
Q ss_pred cCCCC
Q 013716 358 KPQTD 362 (437)
Q Consensus 358 ~~~~~ 362 (437)
..-..
T Consensus 317 QSVsk 321 (479)
T KOG0415|consen 317 QSVSK 321 (479)
T ss_pred hhhhh
Confidence 65443
No 120
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=7.4e-11 Score=96.21 Aligned_cols=135 Identities=25% Similarity=0.389 Sum_probs=114.2
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
...+||||.||-..++++-|.++|-+.|+|..|.|...+. +..+ ||||.|.++.+..-|++.+||..+.++.+.|.+
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~- 83 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTL- 83 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhccc-
Confidence 4568999999999999999999999999999999988765 5666 999999999999999999999999999887654
Q ss_pred cccccccccC----CCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHH
Q 013716 184 ETKNRLFIGN----VPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKM 250 (437)
Q Consensus 184 ~~~~~l~v~n----l~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~ 250 (437)
+-++ |...++.+.+...|+..++ +..+++..+ ..++++.++|+.+...-+...++...
T Consensus 84 ------r~G~shapld~r~~~ei~~~v~s~a~p-~~~~R~~~~--~d~rnrn~~~~~~qr~~~~P~~~~~y 145 (267)
T KOG4454|consen 84 ------RCGNSHAPLDERVTEEILYEVFSQAGP-IEGVRIPTD--NDGRNRNFGFVTYQRLCAVPFALDLY 145 (267)
T ss_pred ------ccCCCcchhhhhcchhhheeeecccCC-CCCcccccc--ccCCccCccchhhhhhhcCcHHhhhh
Confidence 3344 6677888888899999998 888888876 44888999999887776666666544
No 121
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.03 E-value=6.8e-10 Score=102.86 Aligned_cols=82 Identities=22% Similarity=0.427 Sum_probs=73.9
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||.+|...+...+|+.+|++||+|+..+|+.+.... ++|+||++.+.++|.+||..||...|.|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 346899999999999999999999999999999888766444 999999999999999999999999999999999998
Q ss_pred cCCC
Q 013716 358 KPQT 361 (437)
Q Consensus 358 ~~~~ 361 (437)
+...
T Consensus 483 KNEp 486 (940)
T KOG4661|consen 483 KNEP 486 (940)
T ss_pred ccCc
Confidence 7543
No 122
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=2.2e-10 Score=111.77 Aligned_cols=165 Identities=21% Similarity=0.321 Sum_probs=131.6
Q ss_pred CCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEe
Q 013716 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (437)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 181 (437)
.....+|||++||+..+++.+|+..|..+|.|..|.|..-.. +.-.-||||.|.+...+-+|+..+.+..|..-.+++.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 344678999999999999999999999999999999866543 5556689999999998888887766544332221111
Q ss_pred eccccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCC
Q 013716 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (437)
Q Consensus 182 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 261 (437)
+..
T Consensus 447 lG~----------------------------------------------------------------------------- 449 (975)
T KOG0112|consen 447 LGQ----------------------------------------------------------------------------- 449 (975)
T ss_pred ccc-----------------------------------------------------------------------------
Confidence 000
Q ss_pred CeeeecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHh
Q 013716 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (437)
Q Consensus 262 ~~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~ 341 (437)
+ .....+.+++++|+.++....|...|..||.|..|.+.... -||+|.|.+...|+.|+..
T Consensus 450 -------~--------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq----~yayi~yes~~~aq~a~~~ 510 (975)
T KOG0112|consen 450 -------P--------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ----PYAYIQYESPPAAQAATHD 510 (975)
T ss_pred -------c--------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC----cceeeecccCccchhhHHH
Confidence 0 00223689999999999999999999999999999887766 6999999999999999999
Q ss_pred cCCceeCC--eEEEEEeccCCCCC
Q 013716 342 TEKYEIDG--QVLEVVLAKPQTDK 363 (437)
Q Consensus 342 l~g~~i~g--~~l~v~~a~~~~~~ 363 (437)
|.|..|+| +.|+|.|+.+....
T Consensus 511 ~rgap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 511 MRGAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred HhcCcCCCCCcccccccccCCCCC
Confidence 99999986 78999999866543
No 123
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.01 E-value=1.1e-09 Score=101.45 Aligned_cols=84 Identities=24% Similarity=0.477 Sum_probs=78.2
Q ss_pred CCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEe
Q 013716 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (437)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 181 (437)
....+++|||.+|...+-..+|+.+|++||+|+-.+++.+..+--.+.|+||++.+.+.|.+||+.||.+.|.|+-|.|.
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeee
Confidence 34568899999999999999999999999999999999998877889999999999999999999999999999999999
Q ss_pred eccc
Q 013716 182 LSET 185 (437)
Q Consensus 182 ~~~~ 185 (437)
.++.
T Consensus 481 kaKN 484 (940)
T KOG4661|consen 481 KAKN 484 (940)
T ss_pred eccc
Confidence 8763
No 124
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.98 E-value=1.7e-08 Score=97.39 Aligned_cols=107 Identities=28% Similarity=0.418 Sum_probs=87.9
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCeeee
Q 013716 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (437)
Q Consensus 187 ~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~ 266 (437)
++|||+.|+..+++.+|+.+|+.||. |.+|.++. +++||||.+.+.++|.+|+.+|+ .+.+..+.|++.|
T Consensus 422 rTLwvG~i~k~v~e~dL~~~feefGe-iqSi~li~-------~R~cAfI~M~~RqdA~kalqkl~--n~kv~~k~Iki~W 491 (894)
T KOG0132|consen 422 RTLWVGGIPKNVTEQDLANLFEEFGE-IQSIILIP-------PRGCAFIKMVRRQDAEKALQKLS--NVKVADKTIKIAW 491 (894)
T ss_pred eeeeeccccchhhHHHHHHHHHhccc-ceeEeecc-------CCceeEEEEeehhHHHHHHHHHh--cccccceeeEEee
Confidence 68999999999999999999999998 99998866 58999999999999999999998 4688999999999
Q ss_pred cCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHh
Q 013716 267 ADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQ 304 (437)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~ 304 (437)
+...+... .-...+...|-|.-||+..-..+|..++.
T Consensus 492 a~g~G~ks-e~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 492 AVGKGPKS-EYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred eccCCcch-hhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 99988765 22223444566777886655555666554
No 125
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.96 E-value=2.4e-09 Score=93.74 Aligned_cols=75 Identities=27% Similarity=0.543 Sum_probs=68.2
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhc-CCceeCCeEEEEEeccC
Q 013716 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT-EKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 281 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l-~g~~i~g~~l~v~~a~~ 359 (437)
..++|||++|-..+++.+|+++|-+||.|..|.+...+ ++|||+|.+..+|..|..++ |...|+|++|+|.|..+
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~----~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK----GCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc----ccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 35799999999999999999999999999999998877 79999999999999888654 56688999999999988
No 126
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.95 E-value=6.6e-09 Score=85.24 Aligned_cols=83 Identities=25% Similarity=0.459 Sum_probs=70.2
Q ss_pred cceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCC-CCCC--ccEEEEEeCCHHHHHHHHHhcCCceeC---CeEEEEE
Q 013716 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG-KSGK--RDFGFIHYAERSSALKAVKDTEKYEID---GQVLEVV 355 (437)
Q Consensus 282 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~-~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~---g~~l~v~ 355 (437)
.++|||.+||.++...+|..+|..|-..+.+.|-.. +.+. +-+|||+|.+...|.+|+..|||..|+ +..|+|.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 589999999999999999999999877776655433 3322 679999999999999999999999997 7899999
Q ss_pred eccCCCCCC
Q 013716 356 LAKPQTDKK 364 (437)
Q Consensus 356 ~a~~~~~~~ 364 (437)
+|+....++
T Consensus 114 lAKSNtK~k 122 (284)
T KOG1457|consen 114 LAKSNTKRK 122 (284)
T ss_pred ehhcCcccc
Confidence 998765543
No 127
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.92 E-value=3.5e-09 Score=86.18 Aligned_cols=79 Identities=22% Similarity=0.418 Sum_probs=71.4
Q ss_pred cceEEEecCCCCCCHHHHHHHHhcc-CCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 282 VKALYVKNIPDNTSTEKIKELFQRH-GEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 282 ~~~l~V~nLp~~~t~~~L~~~f~~~-G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
...++|..+|..+.+..+..+|.+| |.|..+++-+++.+. ||||||+|++.+.|.-|-..||+..|.++.|.|.+-.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 3579999999999999999999998 678888886766544 9999999999999999999999999999999999987
Q ss_pred CC
Q 013716 359 PQ 360 (437)
Q Consensus 359 ~~ 360 (437)
+.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 66
No 128
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.89 E-value=2.3e-10 Score=111.26 Aligned_cols=135 Identities=24% Similarity=0.314 Sum_probs=116.6
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
...++||+||+..+.+.+|...|..+|.+..+++....+.++.+|+|||.|..++.|.+|+.... ..+.|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d-~~~~g--------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRD-SCFFG--------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhh-hhhhh---------
Confidence 45689999999999999999999999999888887777779999999999999999999996544 44444
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhcc
Q 013716 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253 (437)
Q Consensus 185 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 253 (437)
+..++|.|.|+..|.+.++.++..+|. +++.+++.. ..++++|.++|.|.++..+.++.......
T Consensus 736 -K~~v~i~g~pf~gt~e~~k~l~~~~gn-~~~~~~vt~--r~gkpkg~a~v~y~~ea~~s~~~~s~d~~ 800 (881)
T KOG0128|consen 736 -KISVAISGPPFQGTKEELKSLASKTGN-VTSLRLVTV--RAGKPKGKARVDYNTEADASRKVASVDVA 800 (881)
T ss_pred -hhhhheeCCCCCCchHHHHhhccccCC-ccccchhhh--hccccccceeccCCCcchhhhhcccchhh
Confidence 567899999999999999999999998 888876664 55889999999999999999887765443
No 129
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.88 E-value=4.3e-10 Score=99.57 Aligned_cols=213 Identities=15% Similarity=0.194 Sum_probs=130.8
Q ss_pred CeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCC---CCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES---GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~---~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
..|.|.||.+.+|.+++..||.-.|.|..++|+..... ......|||.|.+...+..|. .|.+++|-++.|.|.+.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 47999999999999999999999999999999874321 234568999999999999888 78888888888888665
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCe
Q 013716 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (437)
Q Consensus 184 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 263 (437)
... +-... .+|..++. -+.+.-+-. ..| |.+.+ ..+..-+....
T Consensus 87 ~~~-----------~~p~r--~af~~l~~-~navprll~------pdg---~Lp~~-------------~~lt~~nh~p~ 130 (479)
T KOG4676|consen 87 GDE-----------VIPDR--FAFVELAD-QNAVPRLLP------PDG---VLPGD-------------RPLTKINHSPN 130 (479)
T ss_pred CCC-----------CCccH--HHHHhcCc-ccccccccC------CCC---ccCCC-------------CccccccCCcc
Confidence 321 11111 14444432 111100000 000 00000 00000011111
Q ss_pred eeecCCCCCCCCccc--ccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHh
Q 013716 264 ISWADPKSTPDHSAA--ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (437)
Q Consensus 264 v~~~~~~~~~~~~~~--~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~ 341 (437)
.-+..|......... ....++|+|++|+..+...++.+.|..+|.|...++.-... .-+|-|.|........|+.
T Consensus 131 ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~--s~~c~~sf~~qts~~halr- 207 (479)
T KOG4676|consen 131 AILKTPELPPQAAAKKLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSR--SSSCSHSFRKQTSSKHALR- 207 (479)
T ss_pred ceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCC--CcchhhhHhhhhhHHHHHH-
Confidence 111111111110000 01136899999999999999999999999998777654432 3578899998888888887
Q ss_pred cCCceeCCeEEEEEeccC
Q 013716 342 TEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 342 l~g~~i~g~~l~v~~a~~ 359 (437)
++|..+.-...++...+|
T Consensus 208 ~~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 208 SHGRERKRQHSRRAIIKP 225 (479)
T ss_pred hcchhhhhhhhhhhhcCc
Confidence 477766544444444433
No 130
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.86 E-value=2.3e-08 Score=73.11 Aligned_cols=79 Identities=23% Similarity=0.272 Sum_probs=67.5
Q ss_pred CCeEEEcCCCcCCCHHHHHHhhcc--cCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccC----CeEEE
Q 013716 106 GSEVFIGGLPKDASEEDLRDLCEP--IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK----GKTIR 179 (437)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~--~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~----g~~i~ 179 (437)
.+||+|+|||...|.+.|.+++.. .|...-+-++.|..++.+.|||||.|.+++.|.+..+.++|..|. .+...
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 379999999999999999988843 367777888889999999999999999999999999999999885 45556
Q ss_pred Eeecc
Q 013716 180 CSLSE 184 (437)
Q Consensus 180 v~~~~ 184 (437)
|.+|+
T Consensus 81 i~yAr 85 (97)
T PF04059_consen 81 ISYAR 85 (97)
T ss_pred EehhH
Confidence 66554
No 131
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.86 E-value=8.5e-09 Score=90.33 Aligned_cols=78 Identities=27% Similarity=0.481 Sum_probs=68.0
Q ss_pred CCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC-CCccCCeEEEE
Q 013716 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH-SKELKGKTIRC 180 (437)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~-~~~~~g~~i~v 180 (437)
.....+||||++|-..+++.+|+++|-+||.|.++++... +++|||+|.+.++|+.|.+.+- ...|.|+.|.|
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 3446789999999889999999999999999999999765 4599999999999999986654 44679999999
Q ss_pred eeccc
Q 013716 181 SLSET 185 (437)
Q Consensus 181 ~~~~~ 185 (437)
.|..+
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99887
No 132
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.84 E-value=8.3e-08 Score=82.49 Aligned_cols=81 Identities=22% Similarity=0.419 Sum_probs=75.8
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCCC
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 361 (437)
.+|+|.|||+.|+..+|+++|..||.+..+.|-.++.+. .|.|-|.|...++|.+|+..+||..++|+.|++.......
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~~ 163 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSPS 163 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCcc
Confidence 689999999999999999999999999999999999888 9999999999999999999999999999999999987665
Q ss_pred CC
Q 013716 362 DK 363 (437)
Q Consensus 362 ~~ 363 (437)
..
T Consensus 164 ~~ 165 (243)
T KOG0533|consen 164 QS 165 (243)
T ss_pred cc
Confidence 54
No 133
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.80 E-value=3.6e-08 Score=72.11 Aligned_cols=79 Identities=18% Similarity=0.351 Sum_probs=68.5
Q ss_pred ceEEEecCCCCCCHHHHHHHHhc--cCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeC----CeEEEE
Q 013716 283 KALYVKNIPDNTSTEKIKELFQR--HGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEID----GQVLEV 354 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~--~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~----g~~l~v 354 (437)
++|.|+|||...|.++|.+++.. .|....+.++.+..++ .|||||.|.+++.|.+-...++|+.+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999999876 4677788888776555 999999999999999999999999886 578999
Q ss_pred EeccCCC
Q 013716 355 VLAKPQT 361 (437)
Q Consensus 355 ~~a~~~~ 361 (437)
.||+-+.
T Consensus 82 ~yAriQG 88 (97)
T PF04059_consen 82 SYARIQG 88 (97)
T ss_pred ehhHhhC
Confidence 9997553
No 134
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.80 E-value=4e-09 Score=88.30 Aligned_cols=135 Identities=8% Similarity=0.175 Sum_probs=99.5
Q ss_pred CCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCeeeecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHh
Q 013716 225 NPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQ 304 (437)
Q Consensus 225 ~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~ 304 (437)
..+..++++|+.|....+-.++-..-+.+ .+....++...........-..-.....+||.+.|...++.+.|-..|.
T Consensus 135 ~p~~~~~~~~~~~k~s~a~~k~~~~~~~K--ki~~~~VR~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~ 212 (290)
T KOG0226|consen 135 RPQPIRPEAFESFKASDALLKAETEKEKK--KIGKPPVRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFK 212 (290)
T ss_pred CCCccCcccccCcchhhhhhhhccccccc--cccCcceeeccccccCCcccccCccccceeecccccccccHHHHHHHHH
Confidence 34566788888887665554444333332 2223333433333333332233334457899999999999999999999
Q ss_pred ccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCCC
Q 013716 305 RHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (437)
Q Consensus 305 ~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 361 (437)
+|-.....++++++.+. +||+||.|.+..++.+|++.|+|..++.++|+++.+..+.
T Consensus 213 Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wke 271 (290)
T KOG0226|consen 213 KFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWKE 271 (290)
T ss_pred hccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHHh
Confidence 99998899999888665 9999999999999999999999999999999998776655
No 135
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.75 E-value=1.1e-08 Score=91.63 Aligned_cols=83 Identities=33% Similarity=0.606 Sum_probs=76.9
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
....|||++||.++++++++++|.+||.|..+.++.|..+.+++||+||.|.+.+++.+++ ..+-..|.++.+.|..+.
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAI 174 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceec-ccceeeecCceeeEeecc
Confidence 3558999999999999999999999999999999999999999999999999999999999 568889999999999998
Q ss_pred cccc
Q 013716 185 TKNR 188 (437)
Q Consensus 185 ~~~~ 188 (437)
++..
T Consensus 175 pk~~ 178 (311)
T KOG4205|consen 175 PKEV 178 (311)
T ss_pred chhh
Confidence 7643
No 136
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.73 E-value=5e-08 Score=83.81 Aligned_cols=83 Identities=24% Similarity=0.439 Sum_probs=74.3
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
....++|+|.|||+.++.++|+++|..||.+..+-+-.++. |++.|+|-|.|...++|.+|++.+++..+.|+.|.+..
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~ 158 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA-GRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEI 158 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC-CCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEE
Confidence 34457899999999999999999999999888887777765 99999999999999999999999999999999998877
Q ss_pred cccc
Q 013716 183 SETK 186 (437)
Q Consensus 183 ~~~~ 186 (437)
....
T Consensus 159 i~~~ 162 (243)
T KOG0533|consen 159 ISSP 162 (243)
T ss_pred ecCc
Confidence 6543
No 137
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.72 E-value=2.3e-08 Score=86.33 Aligned_cols=83 Identities=29% Similarity=0.434 Sum_probs=76.5
Q ss_pred CCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEe
Q 013716 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (437)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 181 (437)
.....+.+||+|+.+.+|.+++..+|+.||.|..+.+..++.++.++|||||+|.+.+.+..|+. |++..|.|+.+.|.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 33467789999999999999999999999999999999999999999999999999999999996 99999999999988
Q ss_pred eccc
Q 013716 182 LSET 185 (437)
Q Consensus 182 ~~~~ 185 (437)
+...
T Consensus 176 ~~r~ 179 (231)
T KOG4209|consen 176 LKRT 179 (231)
T ss_pred eeee
Confidence 7653
No 138
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.69 E-value=4.2e-09 Score=94.32 Aligned_cols=158 Identities=19% Similarity=0.304 Sum_probs=125.2
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCeeee
Q 013716 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (437)
Q Consensus 187 ~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~ 266 (437)
+.+|++||.+.++..++..+|.........-.++ ..+|+||.+.+...|.+|+..++++ ..+.|+.+.+..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~--------k~gyafvd~pdq~wa~kaie~~sgk-~elqGkr~e~~~ 72 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV--------KSGYAFVDCPDQQWANKAIETLSGK-VELQGKRQEVEH 72 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee--------ecceeeccCCchhhhhhhHHhhchh-hhhcCceeeccc
Confidence 4689999999999999999998764322222222 3679999999999999999988764 567788877777
Q ss_pred cCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCce
Q 013716 267 ADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346 (437)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 346 (437)
..++.. ..+++-|+|+|....++.|..++..||.|..|........ ....-|+|.+.+.+..||..|+|+.
T Consensus 73 sv~kkq--------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e-tavvnvty~~~~~~~~ai~kl~g~Q 143 (584)
T KOG2193|consen 73 SVPKKQ--------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE-TAVVNVTYSAQQQHRQAIHKLNGPQ 143 (584)
T ss_pred hhhHHH--------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH-HHHHHHHHHHHHHHHHHHHhhcchH
Confidence 666543 2356889999999999999999999999998866432211 2345678999999999999999999
Q ss_pred eCCeEEEEEeccCCCC
Q 013716 347 IDGQVLEVVLAKPQTD 362 (437)
Q Consensus 347 i~g~~l~v~~a~~~~~ 362 (437)
+....++|.|......
T Consensus 144 ~en~~~k~~YiPdeq~ 159 (584)
T KOG2193|consen 144 LENQHLKVGYIPDEQN 159 (584)
T ss_pred hhhhhhhcccCchhhh
Confidence 9999999999865543
No 139
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.66 E-value=5e-08 Score=90.85 Aligned_cols=78 Identities=23% Similarity=0.470 Sum_probs=66.4
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
...+|||+|||.+++..+|+++|+.||.|....|......+....||||+|.+..++..||.+ +...+.+++|.|..-
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 345699999999999999999999999999998877553344458999999999999999976 677888999887644
No 140
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.61 E-value=1.3e-07 Score=83.07 Aligned_cols=79 Identities=27% Similarity=0.383 Sum_probs=73.1
Q ss_pred cceEEEecCCCCCCHHHHHHHHhccCCee--------EEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEE
Q 013716 282 VKALYVKNIPDNTSTEKIKELFQRHGEVT--------KVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVL 352 (437)
Q Consensus 282 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~--------~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l 352 (437)
.+.|||.|||.++|.+++.++|++||.|. .|+|.++..|. +|=|++.|--.+++..|+..|++..|.|+.|
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~ 213 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKL 213 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEE
Confidence 35799999999999999999999999876 48899999988 9999999999999999999999999999999
Q ss_pred EEEeccCC
Q 013716 353 EVVLAKPQ 360 (437)
Q Consensus 353 ~v~~a~~~ 360 (437)
+|..|+=+
T Consensus 214 rVerAkfq 221 (382)
T KOG1548|consen 214 RVERAKFQ 221 (382)
T ss_pred EEehhhhh
Confidence 99998744
No 141
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.60 E-value=2.5e-07 Score=63.98 Aligned_cols=70 Identities=23% Similarity=0.387 Sum_probs=48.5
Q ss_pred ceEEEecCCCCCCHHH----HHHHHhccC-CeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 283 KALYVKNIPDNTSTEK----IKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~----L~~~f~~~G-~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
..|+|.|||...+... |++++..+| .|..|. .+.|+|.|.+++.|.+|.+.|+|..+.|++|.|+|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~--------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~ 74 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS--------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFS 74 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe--------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEc
Confidence 3699999999888764 566666776 677763 167999999999999999999999999999999998
Q ss_pred cCC
Q 013716 358 KPQ 360 (437)
Q Consensus 358 ~~~ 360 (437)
...
T Consensus 75 ~~~ 77 (90)
T PF11608_consen 75 PKN 77 (90)
T ss_dssp --S
T ss_pred CCc
Confidence 543
No 142
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.58 E-value=2.7e-08 Score=81.52 Aligned_cols=137 Identities=19% Similarity=0.398 Sum_probs=108.9
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCe
Q 013716 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (437)
Q Consensus 184 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 263 (437)
...++|||+|+...++++.|.++|-+.|+ |..+.|..+. .+..+ ||||.|.++.....|+..+++..+ -+..+.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGP-V~kv~ip~~~--d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l--~~~e~q 80 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGP-VYKVGIPSGQ--DQEQK-FAYVFFPNENSVQLAGQLENGDDL--EEDEEQ 80 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCc-eEEEeCCCCc--cCCCc-eeeeecccccchhhhhhhcccchh--ccchhh
Confidence 34689999999999999999999999999 8888887762 23344 999999999999999998877533 333333
Q ss_pred eeecCCCCCCCCcccccCcceEEEec----CCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHH
Q 013716 264 ISWADPKSTPDHSAAASQVKALYVKN----IPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKA 338 (437)
Q Consensus 264 v~~~~~~~~~~~~~~~~~~~~l~V~n----Lp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A 338 (437)
.+++.++ |...++.+.+...|+.-|.+..+++..+.+++ +.++||.+.-.-+.-.+
T Consensus 81 -------------------~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~ 141 (267)
T KOG4454|consen 81 -------------------RTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFA 141 (267)
T ss_pred -------------------cccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHH
Confidence 3566677 77889999999999999999999999988877 88999988665555555
Q ss_pred HHhcCCc
Q 013716 339 VKDTEKY 345 (437)
Q Consensus 339 ~~~l~g~ 345 (437)
+....+.
T Consensus 142 ~~~y~~l 148 (267)
T KOG4454|consen 142 LDLYQGL 148 (267)
T ss_pred hhhhccc
Confidence 6544443
No 143
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.58 E-value=3.1e-07 Score=63.54 Aligned_cols=70 Identities=26% Similarity=0.534 Sum_probs=48.6
Q ss_pred CeEEEcCCCcCCCHHHHHH----hhcccC-CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEe
Q 013716 107 SEVFIGGLPKDASEEDLRD----LCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (437)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~----~f~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 181 (437)
+.|+|.|||.+.+...|+. ++..|| .|..|. .+.|+|.|.+.+.|.+|.+.|+|..+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4699999999998887664 555676 666652 3689999999999999999999999999999999
Q ss_pred ecccc
Q 013716 182 LSETK 186 (437)
Q Consensus 182 ~~~~~ 186 (437)
+....
T Consensus 73 ~~~~~ 77 (90)
T PF11608_consen 73 FSPKN 77 (90)
T ss_dssp SS--S
T ss_pred EcCCc
Confidence 88543
No 144
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.57 E-value=3.6e-08 Score=82.85 Aligned_cols=73 Identities=26% Similarity=0.403 Sum_probs=63.0
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCC--------CCccc----EEEEEecCHHHHHHHHHHhCCCc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES--------GESKG----FAFVSFRSKEFAKKAIDELHSKE 172 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~--------~~~~g----~afV~f~~~~~A~~a~~~l~~~~ 172 (437)
....||++|||+.+...-|+++|.+||.|-.|.|.+...+ |.+++ -+||+|.+...|+++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999998776554 22222 38999999999999999999999
Q ss_pred cCCeE
Q 013716 173 LKGKT 177 (437)
Q Consensus 173 ~~g~~ 177 (437)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99885
No 145
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.56 E-value=8.2e-08 Score=89.66 Aligned_cols=71 Identities=25% Similarity=0.455 Sum_probs=65.5
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEE
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLE 353 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 353 (437)
...++|+|-|||..+++++|+.+|+.||.|..|+..+.+ +|.+||+|-+..+|++|++.|++..|.|+.|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~---~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNK---RGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccccc---CceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 345799999999999999999999999999998776665 57999999999999999999999999999998
No 146
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.55 E-value=7.1e-08 Score=80.98 Aligned_cols=82 Identities=26% Similarity=0.462 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
+....+||.+.|..+++.+.|...|.+|-.....++++++.||+++||+||-|.+..++..|+..|+|..++.+.|.++.
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 34667899999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred cc
Q 013716 183 SE 184 (437)
Q Consensus 183 ~~ 184 (437)
+.
T Consensus 267 S~ 268 (290)
T KOG0226|consen 267 SE 268 (290)
T ss_pred hh
Confidence 54
No 147
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.53 E-value=1.7e-07 Score=78.74 Aligned_cols=74 Identities=23% Similarity=0.445 Sum_probs=67.2
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCCCC
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~ 362 (437)
..+||++||+.+.+.+|..+|..||.|..|.+.. ||+||+|.+..+|..|+..||+..|.|-.+.|.|++..+.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~ 75 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRR 75 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec------ccceeccCchhhhhcccchhcCceecceeeeeeccccccc
Confidence 3699999999999999999999999999988743 7899999999999999999999999998899999875543
No 148
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.51 E-value=5.9e-07 Score=77.66 Aligned_cols=80 Identities=23% Similarity=0.394 Sum_probs=73.2
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...+.+||+|+.+.+|.+.+..+|+.||.|..|.|+.++... +|||||+|.+.+.+..|+. |++..|.|+.+.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 344789999999999999999999999999999999888764 9999999999999999999 9999999999999998
Q ss_pred cCC
Q 013716 358 KPQ 360 (437)
Q Consensus 358 ~~~ 360 (437)
+-.
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 654
No 149
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.42 E-value=8.1e-07 Score=85.14 Aligned_cols=83 Identities=20% Similarity=0.334 Sum_probs=73.4
Q ss_pred ccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCC----CC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEE
Q 013716 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS----GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLE 353 (437)
Q Consensus 279 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~----~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 353 (437)
.+.+++|||+||++.++++.|...|..||.|..|+|+.... .+ +.||||-|-+..+|.+|+..|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 35678999999999999999999999999999998875442 12 77999999999999999999999999999999
Q ss_pred EEeccCCC
Q 013716 354 VVLAKPQT 361 (437)
Q Consensus 354 v~~a~~~~ 361 (437)
+-|++.-.
T Consensus 251 ~gWgk~V~ 258 (877)
T KOG0151|consen 251 LGWGKAVP 258 (877)
T ss_pred eccccccc
Confidence 99996543
No 150
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.37 E-value=1.3e-06 Score=77.53 Aligned_cols=84 Identities=19% Similarity=0.300 Sum_probs=73.6
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCee--------EEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCC
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT--------KVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDG 349 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~--------~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g 349 (437)
....+|||-+||..++.++|..+|.++|.|. .|.|.+++.+. |+-|.|.|.+...|+.||..+++..|.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 4457899999999999999999999999875 35666666555 9999999999999999999999999999
Q ss_pred eEEEEEeccCCCCC
Q 013716 350 QVLEVVLAKPQTDK 363 (437)
Q Consensus 350 ~~l~v~~a~~~~~~ 363 (437)
.+|+|.+|..+...
T Consensus 144 n~ikvs~a~~r~~v 157 (351)
T KOG1995|consen 144 NTIKVSLAERRTGV 157 (351)
T ss_pred CCchhhhhhhccCc
Confidence 99999999876643
No 151
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.36 E-value=8.4e-07 Score=85.03 Aligned_cols=82 Identities=20% Similarity=0.352 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecC---CCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDK---ESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~---~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 179 (437)
.+..++|||+||++.+++..|...|..||+|..|+|+.-+ ...+.+-|+||.|-+..+|.+|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 4567889999999999999999999999999999986532 2346677999999999999999999999999999999
Q ss_pred Eeecc
Q 013716 180 CSLSE 184 (437)
Q Consensus 180 v~~~~ 184 (437)
+-|++
T Consensus 251 ~gWgk 255 (877)
T KOG0151|consen 251 LGWGK 255 (877)
T ss_pred ecccc
Confidence 99884
No 152
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.35 E-value=1.4e-06 Score=76.49 Aligned_cols=72 Identities=14% Similarity=0.218 Sum_probs=60.3
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccC--CeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEE
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHG--EVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G--~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 354 (437)
.++||+||-|.+|+++|.+.+...| .+..++++.++.+. ||||+|...+..+.++.+..|-.+.|.|+.-.|
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 5899999999999999999998877 45567777655433 999999999999999999999999999875444
No 153
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.27 E-value=2e-06 Score=64.70 Aligned_cols=71 Identities=27% Similarity=0.429 Sum_probs=46.3
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCC-----ceeCCeEEEEEec
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK-----YEIDGQVLEVVLA 357 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-----~~i~g~~l~v~~a 357 (437)
..|+|.+++..++.++|+.+|+.||.|..|.+.+.. ..|||.|.+.+.|.+|+..+.- ..|.+..+++...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~----~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL 77 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD----TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL 77 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-----SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC----CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence 478999999999999999999999999999998866 4799999999999999987753 3667777766653
No 154
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.16 E-value=2.1e-06 Score=76.37 Aligned_cols=83 Identities=33% Similarity=0.514 Sum_probs=75.4
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeE--------EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCe
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVF--------EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK 176 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~--------~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 176 (437)
...+|||.+||..+++.+|.++|.+||.|. .|.|.+++.|+++||-|.|.|.+...|+.|+.-+++..+.+.
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn 144 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGN 144 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCC
Confidence 456899999999999999999999999874 477888999999999999999999999999999999999999
Q ss_pred EEEEeeccccc
Q 013716 177 TIRCSLSETKN 187 (437)
Q Consensus 177 ~i~v~~~~~~~ 187 (437)
+|.|..+...+
T Consensus 145 ~ikvs~a~~r~ 155 (351)
T KOG1995|consen 145 TIKVSLAERRT 155 (351)
T ss_pred Cchhhhhhhcc
Confidence 99988876544
No 155
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.11 E-value=6.4e-06 Score=72.16 Aligned_cols=89 Identities=19% Similarity=0.419 Sum_probs=67.6
Q ss_pred CCeEEEcCCCcCCCHHHH------HHhhcccCCeEEEEEeecCCCCC-cccE--EEEEecCHHHHHHHHHHhCCCccCCe
Q 013716 106 GSEVFIGGLPKDASEEDL------RDLCEPIGDVFEVRLMKDKESGE-SKGF--AFVSFRSKEFAKKAIDELHSKELKGK 176 (437)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l------~~~f~~~G~i~~v~~~~~~~~~~-~~g~--afV~f~~~~~A~~a~~~l~~~~~~g~ 176 (437)
..-+||-+||+.+..+++ .++|.+||.|..|.+.+.-.+.. ..+. .||+|.+.++|.+||...+|..+.||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 345799999988877762 26999999999888755431111 1222 49999999999999999999999999
Q ss_pred EEEEeecccc-ccccccCC
Q 013716 177 TIRCSLSETK-NRLFIGNV 194 (437)
Q Consensus 177 ~i~v~~~~~~-~~l~v~nl 194 (437)
.|+..+...+ ++.|++|+
T Consensus 194 ~lkatYGTTKYCtsYLRn~ 212 (480)
T COG5175 194 VLKATYGTTKYCTSYLRNA 212 (480)
T ss_pred eEeeecCchHHHHHHHcCC
Confidence 9999998765 34455554
No 156
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.09 E-value=7.5e-06 Score=61.64 Aligned_cols=59 Identities=25% Similarity=0.433 Sum_probs=39.4
Q ss_pred CeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCC
Q 013716 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK 171 (437)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~ 171 (437)
+.|+|.+++..++.++|+.+|+.||.|..|.+.+.. ..|||.|.+.+.|++|++.+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhc
Confidence 579999999999999999999999999999886543 37999999999999999876644
No 157
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=98.03 E-value=2.5e-05 Score=66.15 Aligned_cols=87 Identities=22% Similarity=0.398 Sum_probs=69.7
Q ss_pred HHHHHHHHHhccCcccCCCCCeeeecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC
Q 013716 242 CADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK 321 (437)
Q Consensus 242 ~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~ 321 (437)
-|..|...|.+. ...++.+.+.++.. ..|+|.||...++.+.|.+.|+.||.|....+.-+..+.
T Consensus 6 ~ae~ak~eLd~~--~~~~~~lr~rfa~~-------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k 70 (275)
T KOG0115|consen 6 LAEIAKRELDGR--FPKGRSLRVRFAMH-------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGK 70 (275)
T ss_pred HHHHHHHhcCCC--CCCCCceEEEeecc-------------ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccccc
Confidence 344455555443 55678888888765 379999999999999999999999999977666555555
Q ss_pred -ccEEEEEeCCHHHHHHHHHhcC
Q 013716 322 -RDFGFIHYAERSSALKAVKDTE 343 (437)
Q Consensus 322 -~g~afV~f~~~~~A~~A~~~l~ 343 (437)
.+-++|.|...-.|.+|+..++
T Consensus 71 ~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 71 PTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ccccchhhhhcchhHHHHHHHhc
Confidence 7889999999999999999885
No 158
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.90 E-value=1.7e-05 Score=69.82 Aligned_cols=78 Identities=19% Similarity=0.389 Sum_probs=69.5
Q ss_pred CCeEEEcCCCcCCCHHHHHHhhcccC--CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 106 GSEVFIGGLPKDASEEDLRDLCEPIG--DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G--~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
.-.+||+||-|.+|.++|.+.+...| .|.++++..++.+|.+||||.|...+..+.++.++.|..+.|.|+.-.|...
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 34689999999999999999998888 6788899999989999999999999999999999999999999886665443
No 159
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=5e-05 Score=71.39 Aligned_cols=76 Identities=24% Similarity=0.403 Sum_probs=63.9
Q ss_pred ceEEEecCCCCCCH------HHHHHHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeC-CeEEEE
Q 013716 283 KALYVKNIPDNTST------EKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEID-GQVLEV 354 (437)
Q Consensus 283 ~~l~V~nLp~~~t~------~~L~~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~-g~~l~v 354 (437)
.+|+|-|+|---.. ..|..+|+++|.|+.+.++.+..++ +||.|++|.+..+|..|++.|||+.|+ .+++.|
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v 138 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFV 138 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEe
Confidence 68999999843222 3567889999999999999888777 999999999999999999999999887 678887
Q ss_pred Eecc
Q 013716 355 VLAK 358 (437)
Q Consensus 355 ~~a~ 358 (437)
+.-+
T Consensus 139 ~~f~ 142 (698)
T KOG2314|consen 139 RLFK 142 (698)
T ss_pred ehhh
Confidence 6543
No 160
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.82 E-value=1.2e-05 Score=72.15 Aligned_cols=81 Identities=31% Similarity=0.598 Sum_probs=73.5
Q ss_pred CCCeEE-EcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 105 NGSEVF-IGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 105 ~~~~l~-v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
...++| |+||++.++.++|+.+|..+|.|..+++..+..++.++|+|||.|.+...+..++.. ....+.++++.+...
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 344566 999999999999999999999999999999999999999999999999999999977 788899999998887
Q ss_pred ccc
Q 013716 184 ETK 186 (437)
Q Consensus 184 ~~~ 186 (437)
.+.
T Consensus 262 ~~~ 264 (285)
T KOG4210|consen 262 EPR 264 (285)
T ss_pred CCC
Confidence 654
No 161
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.78 E-value=6.6e-05 Score=65.98 Aligned_cols=78 Identities=23% Similarity=0.465 Sum_probs=63.4
Q ss_pred cceEEEecCCCCCCHHH----H--HHHHhccCCeeEEEeCCCCCC--C-cc-E-EEEEeCCHHHHHHHHHhcCCceeCCe
Q 013716 282 VKALYVKNIPDNTSTEK----I--KELFQRHGEVTKVVMPPGKSG--K-RD-F-GFIHYAERSSALKAVKDTEKYEIDGQ 350 (437)
Q Consensus 282 ~~~l~V~nLp~~~t~~~----L--~~~f~~~G~v~~v~i~~~~~~--~-~g-~-afV~f~~~~~A~~A~~~l~g~~i~g~ 350 (437)
..-+||-+||..+-.++ | .++|.+||.|..|.|-+.... + .+ + .||+|.+.++|.+||...+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 35689999998877665 2 578999999999988655421 1 23 2 39999999999999999999999999
Q ss_pred EEEEEeccC
Q 013716 351 VLEVVLAKP 359 (437)
Q Consensus 351 ~l~v~~a~~ 359 (437)
.|+..|..-
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999999763
No 162
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.75 E-value=1.7e-05 Score=67.18 Aligned_cols=69 Identities=20% Similarity=0.434 Sum_probs=60.5
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCC----------C--cc--EEEEEeCCHHHHHHHHHhcCCceeC
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG----------K--RD--FGFIHYAERSSALKAVKDTEKYEID 348 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~----------~--~g--~afV~f~~~~~A~~A~~~l~g~~i~ 348 (437)
-.||+++||+.+....|+++|+.||.|-+|.+.+.... + .- -|+|+|.+...|.++...||+..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 48999999999999999999999999999999865532 1 12 3899999999999999999999999
Q ss_pred CeE
Q 013716 349 GQV 351 (437)
Q Consensus 349 g~~ 351 (437)
|+.
T Consensus 155 gkk 157 (278)
T KOG3152|consen 155 GKK 157 (278)
T ss_pred CCC
Confidence 974
No 163
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.73 E-value=7.5e-05 Score=48.37 Aligned_cols=52 Identities=21% Similarity=0.517 Sum_probs=42.6
Q ss_pred CeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q 013716 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165 (437)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~ 165 (437)
+.|-|.+.|.+..+. +..+|..||.|..+.+.. ...+.||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 578999999887764 455888999999998852 2448999999999999985
No 164
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.68 E-value=0.00015 Score=46.92 Aligned_cols=52 Identities=25% Similarity=0.511 Sum_probs=42.4
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHH
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~ 339 (437)
+.|-|.+.+....+. |..+|..||.|..+.+.... .+.||+|.+..+|.+|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~----~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPEST----NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCC----cEEEEEECCHHHHHhhC
Confidence 467888988776655 55588899999999998433 57999999999999985
No 165
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.66 E-value=0.00076 Score=61.62 Aligned_cols=66 Identities=17% Similarity=0.291 Sum_probs=55.8
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCC---CCC------------CccEEEEEeCCHHHHHHHHHhcCC
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG---KSG------------KRDFGFIHYAERSSALKAVKDTEK 344 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~---~~~------------~~g~afV~f~~~~~A~~A~~~l~g 344 (437)
.+.++|.+.|||.+-.-+-|.++|+.+|.|..|+|+.- ... .+-+|||+|...+.|.+|...|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 35689999999999888999999999999999999865 110 145799999999999999998864
Q ss_pred c
Q 013716 345 Y 345 (437)
Q Consensus 345 ~ 345 (437)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 4
No 166
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.63 E-value=1.7e-05 Score=71.78 Aligned_cols=135 Identities=22% Similarity=0.337 Sum_probs=102.7
Q ss_pred eEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCc-cCCeEEEEeecccc
Q 013716 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE-LKGKTIRCSLSETK 186 (437)
Q Consensus 108 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~-~~g~~i~v~~~~~~ 186 (437)
.+|++||.+.++..+|..+|.....-.+-.++. ..|||||.+.+..-|.+|++.++++. +.|+.+.|..+.++
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 489999999999999999997642111111111 25799999999999999999999885 78999999888765
Q ss_pred ----ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhcc
Q 013716 187 ----NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253 (437)
Q Consensus 187 ----~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 253 (437)
+.+-|+|+|+....+-+..+...||. +.+|..+.. ..-.-..-|+|...+.+..|+..+++.
T Consensus 77 kqrsrk~Qirnippql~wevld~Ll~qyg~-ve~~eqvnt----~~etavvnvty~~~~~~~~ai~kl~g~ 142 (584)
T KOG2193|consen 77 KQRSRKIQIRNIPPQLQWEVLDSLLAQYGT-VENCEQVNT----DSETAVVNVTYSAQQQHRQAIHKLNGP 142 (584)
T ss_pred HHHhhhhhHhcCCHHHHHHHHHHHHhccCC-HhHhhhhcc----chHHHHHHHHHHHHHHHHHHHHhhcch
Confidence 67899999999999999999999997 777655432 111112235677778888888877654
No 167
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.52 E-value=0.00024 Score=60.41 Aligned_cols=92 Identities=18% Similarity=0.299 Sum_probs=79.4
Q ss_pred HHHHHHHHhCCCccCCeEEEEeeccccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecC
Q 013716 160 FAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYN 239 (437)
Q Consensus 160 ~A~~a~~~l~~~~~~g~~i~v~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~ 239 (437)
-|..|...|.+....|+.++|.++.. ..|+|.||...+..+.+.+.|+.||+ |....++-| ..++..+-++|.|..
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~-a~l~V~nl~~~~sndll~~~f~~fg~-~e~av~~vD--~r~k~t~eg~v~~~~ 81 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH-AELYVVNLMQGASNDLLEQAFRRFGP-IERAVAKVD--DRGKPTREGIVEFAK 81 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc-ceEEEEecchhhhhHHHHHhhhhcCc-cchheeeec--ccccccccchhhhhc
Confidence 46667777899999999999999998 99999999999999999999999998 777666665 457788889999999
Q ss_pred hHHHHHHHHHHhccCc
Q 013716 240 NACADYSRQKMLNANF 255 (437)
Q Consensus 240 ~~~a~~a~~~~~~~~~ 255 (437)
.-.+.+|+.......+
T Consensus 82 k~~a~~a~rr~~~~g~ 97 (275)
T KOG0115|consen 82 KPNARKAARRCREGGF 97 (275)
T ss_pred chhHHHHHHHhccCcc
Confidence 9999999988755443
No 168
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.51 E-value=0.00065 Score=50.28 Aligned_cols=74 Identities=15% Similarity=0.218 Sum_probs=50.6
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCCeeEEE-eCCC-------CC-CCccEEEEEeCCHHHHHHHHHhcCCceeCCe-EE
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVV-MPPG-------KS-GKRDFGFIHYAERSSALKAVKDTEKYEIDGQ-VL 352 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~-i~~~-------~~-~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~-~l 352 (437)
.-|.|-+.|.. ....|...|++||.|.... +.+. +. .......|+|.++.+|.+||.+ ||..|.|. .+
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEEE
Confidence 56888899877 5566789999999998764 2111 00 1135789999999999999995 99999986 45
Q ss_pred EEEecc
Q 013716 353 EVVLAK 358 (437)
Q Consensus 353 ~v~~a~ 358 (437)
-|.+++
T Consensus 85 GV~~~~ 90 (100)
T PF05172_consen 85 GVKPCD 90 (100)
T ss_dssp EEEE-H
T ss_pred EEEEcH
Confidence 577764
No 169
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.50 E-value=5.2e-05 Score=64.49 Aligned_cols=63 Identities=13% Similarity=0.204 Sum_probs=55.2
Q ss_pred HHHHHHHh-ccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 297 EKIKELFQ-RHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 297 ~~L~~~f~-~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
++|...|+ +||.|..+.|..+.... +|-+||.|...++|.+|+..||+.+|.|++|.+.+...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 45666666 89999999888877666 88999999999999999999999999999999998753
No 170
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=0.0004 Score=65.08 Aligned_cols=65 Identities=31% Similarity=0.420 Sum_probs=60.0
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhc-ccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHH
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCE-PIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~-~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 167 (437)
..+.+||||++||--+|.++|..+|. -||.|..+-|=.|+.-+.++|-|-|+|.+..+-.+||.+
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 34778999999999999999999997 799999999999977799999999999999999999964
No 171
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.42 E-value=0.0003 Score=66.28 Aligned_cols=77 Identities=31% Similarity=0.437 Sum_probs=62.3
Q ss_pred CCCeEEEcCCCcC--CC----HHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccC-CeE
Q 013716 105 NGSEVFIGGLPKD--AS----EEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK-GKT 177 (437)
Q Consensus 105 ~~~~l~v~nLp~~--~t----~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~-g~~ 177 (437)
-...|+|.|+|.- .. ..-|..+|+++|+|+.+.++.+.. |.++||.|++|.+..+|+.|++.|||..|. .++
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3467999999953 22 224567999999999999998887 559999999999999999999999999875 555
Q ss_pred EEEee
Q 013716 178 IRCSL 182 (437)
Q Consensus 178 i~v~~ 182 (437)
..|..
T Consensus 136 f~v~~ 140 (698)
T KOG2314|consen 136 FFVRL 140 (698)
T ss_pred EEeeh
Confidence 55544
No 172
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.37 E-value=0.00016 Score=65.88 Aligned_cols=68 Identities=28% Similarity=0.423 Sum_probs=57.3
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeec---CCC--CCc--------ccEEEEEecCHHHHHHHHHHhCCC
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD---KES--GES--------KGFAFVSFRSKEFAKKAIDELHSK 171 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~---~~~--~~~--------~g~afV~f~~~~~A~~a~~~l~~~ 171 (437)
+++||.+.|||.+-.-+-|.++|..||.|..|+|+.- +.. +.. +-+|+|+|...+.|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 6899999999999999999999999999999999875 222 222 446999999999999999887654
Q ss_pred c
Q 013716 172 E 172 (437)
Q Consensus 172 ~ 172 (437)
.
T Consensus 310 ~ 310 (484)
T KOG1855|consen 310 Q 310 (484)
T ss_pred h
Confidence 4
No 173
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.36 E-value=0.0011 Score=52.04 Aligned_cols=57 Identities=23% Similarity=0.413 Sum_probs=46.5
Q ss_pred HHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCCC
Q 013716 298 KIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (437)
Q Consensus 298 ~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 361 (437)
+|.+.|..||.|.=|++..+. -+|+|.+-..|.+|+. ++|..|.|+.|+|++..+.=
T Consensus 52 ~ll~~~~~~GevvLvRfv~~~------mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpdW 108 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGDT------MWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPDW 108 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETTC------EEEEESSCHHHHHHHH-GCCSEETTEEEEEEE-----
T ss_pred HHHHHHHhCCceEEEEEeCCe------EEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCccH
Confidence 678889999999988887754 8999999999999998 79999999999999977553
No 174
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.33 E-value=0.00067 Score=58.72 Aligned_cols=77 Identities=23% Similarity=0.300 Sum_probs=58.1
Q ss_pred ceEEEecC--CCCCCH---HHHHHHHhccCCeeEEEeCCCCCCC---ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEE
Q 013716 283 KALYVKNI--PDNTST---EKIKELFQRHGEVTKVVMPPGKSGK---RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (437)
Q Consensus 283 ~~l~V~nL--p~~~t~---~~L~~~f~~~G~v~~v~i~~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 354 (437)
+.|.++|. +-.+.+ .+++..+.+||.|..|.|+-..+.. ----||+|...++|.+|+..|||+.|+||.+..
T Consensus 282 kvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A 361 (378)
T KOG1996|consen 282 KVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSA 361 (378)
T ss_pred HHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeh
Confidence 33555554 233333 3678889999999998877554322 223799999999999999999999999999998
Q ss_pred EeccC
Q 013716 355 VLAKP 359 (437)
Q Consensus 355 ~~a~~ 359 (437)
.|...
T Consensus 362 ~Fyn~ 366 (378)
T KOG1996|consen 362 CFYNL 366 (378)
T ss_pred eeccH
Confidence 88653
No 175
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.30 E-value=0.001 Score=52.22 Aligned_cols=79 Identities=22% Similarity=0.362 Sum_probs=54.0
Q ss_pred hcCCCCCCCeEEEcCCCc------CCCH---HHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC
Q 013716 99 LLALPPNGSEVFIGGLPK------DASE---EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169 (437)
Q Consensus 99 ~~~~~~~~~~l~v~nLp~------~~t~---~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 169 (437)
....-|+..||.|.=+.+ ...+ .+|.+.|..||.|.-||++-+ .-||+|.+-.+|.+|+ .++
T Consensus 20 i~~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaal-s~d 90 (146)
T PF08952_consen 20 ISSQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAAL-SLD 90 (146)
T ss_dssp S-----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHH-HGC
T ss_pred HHhcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHH-ccC
Confidence 344556677888876651 2222 267788899999998888754 4799999999999999 789
Q ss_pred CCccCCeEEEEeecccc
Q 013716 170 SKELKGKTIRCSLSETK 186 (437)
Q Consensus 170 ~~~~~g~~i~v~~~~~~ 186 (437)
|..+.|+.|.|+.-.+.
T Consensus 91 g~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 91 GIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp CSEETTEEEEEEE----
T ss_pred CcEECCEEEEEEeCCcc
Confidence 99999999999876543
No 176
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.30 E-value=0.00086 Score=63.77 Aligned_cols=79 Identities=15% Similarity=0.211 Sum_probs=64.6
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhc-cCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCcee---CCeEEEEE
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQR-HGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI---DGQVLEVV 355 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~-~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i---~g~~l~v~ 355 (437)
..++.|+|.||-..+|.-.|+.++.. .|.|+..-|.+- |..|||.|.+.++|...+.+|||..| +.+.|.+.
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh----hcceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 45688999999999999999999995 566666633322 35699999999999999999999977 47899999
Q ss_pred eccCCCC
Q 013716 356 LAKPQTD 362 (437)
Q Consensus 356 ~a~~~~~ 362 (437)
|+.....
T Consensus 518 f~~~del 524 (718)
T KOG2416|consen 518 FVRADEL 524 (718)
T ss_pred ecchhHH
Confidence 9875543
No 177
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.28 E-value=7.7e-05 Score=63.49 Aligned_cols=63 Identities=29% Similarity=0.437 Sum_probs=51.9
Q ss_pred HHHHHhhc-ccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 121 EDLRDLCE-PIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 121 ~~l~~~f~-~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
++|...|. +||.|..+.+..+.. -.-.|-+||.|...++|.+|++.||+..+.|++|...++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~-~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLG-DHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccc-hhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34444554 899999998766543 4678899999999999999999999999999999877653
No 178
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.23 E-value=0.0018 Score=47.99 Aligned_cols=76 Identities=11% Similarity=0.221 Sum_probs=50.7
Q ss_pred CCeEEEcCCCcCCCHHHHHHhhcccCCeEEEE-EeecC------CCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 013716 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVR-LMKDK------ESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (437)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~-~~~~~------~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 178 (437)
.+.|.|-+.|+. ....|..+|++||.|.+.. +.++. ..-.......|+|.++.+|.+|| ..||..+.|..|
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL-~~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRAL-QKNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHH-TTTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHH-HhCCeEEcCcEE
Confidence 466899999998 4557788999999998775 10000 00123458999999999999999 569999998766
Q ss_pred E-Eeec
Q 013716 179 R-CSLS 183 (437)
Q Consensus 179 ~-v~~~ 183 (437)
- |.++
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 5 5544
No 179
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.22 E-value=0.00055 Score=65.02 Aligned_cols=80 Identities=23% Similarity=0.262 Sum_probs=65.2
Q ss_pred CCCCCCeEEEcCCCcCCCHHHHHHhhc-ccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCcc---CCeE
Q 013716 102 LPPNGSEVFIGGLPKDASEEDLRDLCE-PIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL---KGKT 177 (437)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~-~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~---~g~~ 177 (437)
.-+.+..|+|.||-.-+|.-+|+.++. .+|.|...+ .|+. +..|||.|.+.+.|...+.+|||..| +++.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~W--mDkI----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFW--MDKI----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHH--HHHh----hcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 344667899999999999999999997 566776663 3432 44699999999999999999999988 5789
Q ss_pred EEEeeccccc
Q 013716 178 IRCSLSETKN 187 (437)
Q Consensus 178 i~v~~~~~~~ 187 (437)
|.+.|.....
T Consensus 514 L~adf~~~de 523 (718)
T KOG2416|consen 514 LIADFVRADE 523 (718)
T ss_pred eEeeecchhH
Confidence 9998877543
No 180
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.20 E-value=0.00073 Score=60.90 Aligned_cols=76 Identities=14% Similarity=0.231 Sum_probs=63.4
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-----ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-----RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
..|.|.||.+.++.+.++.+|...|.|..+.|++..... ...|||.|.+...+..|-. |.+..|=++.|.|..+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEec
Confidence 479999999999999999999999999999998755432 5589999999998888776 6777777888777665
Q ss_pred cC
Q 013716 358 KP 359 (437)
Q Consensus 358 ~~ 359 (437)
-.
T Consensus 87 ~~ 88 (479)
T KOG4676|consen 87 GD 88 (479)
T ss_pred CC
Confidence 43
No 181
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=97.14 E-value=0.0014 Score=64.37 Aligned_cols=11 Identities=0% Similarity=0.042 Sum_probs=5.4
Q ss_pred HHHHHHHHHHh
Q 013716 158 KEFAKKAIDEL 168 (437)
Q Consensus 158 ~~~A~~a~~~l 168 (437)
...+.+|++++
T Consensus 209 ~~eiIrClka~ 219 (1102)
T KOG1924|consen 209 LQEIIRCLKAF 219 (1102)
T ss_pred HHHHHHHHHHH
Confidence 34455555443
No 182
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.71 E-value=0.011 Score=39.17 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=45.3
Q ss_pred ceEEEecCCCCCCHHHHHHHHhcc---CCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhc
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRH---GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~---G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l 342 (437)
..|+|+++. .++.++|+.+|..| ....+|..+.+. .|-|.|.+...|.+||..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-----ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-----SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-----cEEEEECCHHHHHHHHHcC
Confidence 579999986 68999999999998 135578777776 5899999999999999865
No 183
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=96.45 E-value=0.0022 Score=67.02 Aligned_cols=7 Identities=14% Similarity=0.344 Sum_probs=3.0
Q ss_pred HHHHhhc
Q 013716 122 DLRDLCE 128 (437)
Q Consensus 122 ~l~~~f~ 128 (437)
.|.++|+
T Consensus 740 ~La~~Fk 746 (784)
T PF04931_consen 740 QLAAIFK 746 (784)
T ss_pred HHHHHHH
Confidence 3444443
No 184
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.43 E-value=0.014 Score=55.70 Aligned_cols=74 Identities=20% Similarity=0.253 Sum_probs=57.9
Q ss_pred CCCCCeEEEcCCCcC-CCHHHHHHhhccc----CCeEEEEEeecCC----------CCC---------------------
Q 013716 103 PPNGSEVFIGGLPKD-ASEEDLRDLCEPI----GDVFEVRLMKDKE----------SGE--------------------- 146 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~-~t~~~l~~~f~~~----G~i~~v~~~~~~~----------~~~--------------------- 146 (437)
....++|-|.||.|+ +...+|.-+|..| |.|.+|.|++... +|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 346678999999996 7889999988776 5899999875421 111
Q ss_pred ----------------cccEEEEEecCHHHHHHHHHHhCCCccCCe
Q 013716 147 ----------------SKGFAFVSFRSKEFAKKAIDELHSKELKGK 176 (437)
Q Consensus 147 ----------------~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 176 (437)
..-||.|+|.+.+.|.+..+.+.|..+...
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 123699999999999999999999988643
No 185
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.41 E-value=0.0098 Score=51.73 Aligned_cols=77 Identities=21% Similarity=0.358 Sum_probs=56.8
Q ss_pred CeEEEcCC--CcCCC---HHHHHHhhcccCCeEEEEEeecCCCCCc-ccEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 013716 107 SEVFIGGL--PKDAS---EEDLRDLCEPIGDVFEVRLMKDKESGES-KGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (437)
Q Consensus 107 ~~l~v~nL--p~~~t---~~~l~~~f~~~G~i~~v~~~~~~~~~~~-~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 180 (437)
+.|.++|. +-.+. +.+++.-+.+||.|..|.|...+..-.. .---||+|...++|.+|+-.|||..|.||.++.
T Consensus 282 kvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A 361 (378)
T KOG1996|consen 282 KVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSA 361 (378)
T ss_pred HHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeh
Confidence 34566665 22333 4467889999999999988776532111 123799999999999999999999999999876
Q ss_pred eec
Q 013716 181 SLS 183 (437)
Q Consensus 181 ~~~ 183 (437)
.+.
T Consensus 362 ~Fy 364 (378)
T KOG1996|consen 362 CFY 364 (378)
T ss_pred eec
Confidence 543
No 186
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.27 E-value=0.015 Score=57.50 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=7.3
Q ss_pred CCHHHHHHhhcccC
Q 013716 118 ASEEDLRDLCEPIG 131 (437)
Q Consensus 118 ~t~~~l~~~f~~~G 131 (437)
++..++-.+|...|
T Consensus 83 ls~~e~~~~F~~~~ 96 (1102)
T KOG1924|consen 83 LSSNEVLELFELMG 96 (1102)
T ss_pred ccHHHHHHHHHHHh
Confidence 44555555555544
No 187
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.23 E-value=0.015 Score=45.05 Aligned_cols=71 Identities=14% Similarity=0.241 Sum_probs=54.9
Q ss_pred CcceEEEecCCCCCCH----HHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEe
Q 013716 281 QVKALYVKNIPDNTST----EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (437)
Q Consensus 281 ~~~~l~V~nLp~~~t~----~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 356 (437)
+..+|.|+=|..++.. ..|...++.||.|.+|.+.-. ..|.|.|.+..+|-+|+.+++. ...|..+.++|
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-----qsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-----QSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-----ceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 3457888766655533 345566788999999988644 3699999999999999999876 66788888888
Q ss_pred c
Q 013716 357 A 357 (437)
Q Consensus 357 a 357 (437)
-
T Consensus 159 q 159 (166)
T PF15023_consen 159 Q 159 (166)
T ss_pred c
Confidence 5
No 188
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.23 E-value=0.0018 Score=64.74 Aligned_cols=79 Identities=15% Similarity=0.281 Sum_probs=68.2
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 281 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
.+++||++||+..+++.+|+..|..+|.|..|.|-..+.+. ..||||.|.+...+-+|...+.+..|....+++.+..+
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~ 450 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP 450 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccccc
Confidence 36899999999999999999999999999999887665444 67999999999999999999999888776777766644
No 189
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.14 E-value=0.031 Score=43.36 Aligned_cols=75 Identities=23% Similarity=0.275 Sum_probs=56.3
Q ss_pred CCCCCCeEEEcCCCcCC----CHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeE
Q 013716 102 LPPNGSEVFIGGLPKDA----SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177 (437)
Q Consensus 102 ~~~~~~~l~v~nLp~~~----t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 177 (437)
..++=.||.|+=|..++ +-..+...++.||+|.+|.++-. -.|.|.|.+..+|-+|+.+++. ...|.-
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGr-------qsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGR-------QSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCC-------ceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 35566789998776654 33345567789999999998632 2599999999999999988765 566777
Q ss_pred EEEeecc
Q 013716 178 IRCSLSE 184 (437)
Q Consensus 178 i~v~~~~ 184 (437)
+.+.|-.
T Consensus 154 ~qCsWqq 160 (166)
T PF15023_consen 154 FQCSWQQ 160 (166)
T ss_pred EEeeccc
Confidence 7776643
No 190
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.12 E-value=0.036 Score=52.77 Aligned_cols=69 Identities=19% Similarity=0.317 Sum_probs=56.6
Q ss_pred ceEEEecCCCCCCHHHHHHHHhc--cCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCC--ceeCCeEEEEEe
Q 013716 283 KALYVKNIPDNTSTEKIKELFQR--HGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK--YEIDGQVLEVVL 356 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~--~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g--~~i~g~~l~v~~ 356 (437)
+.|.++-||.++..++|+.+|.. +-.+.+|.+-.+.+ .||+|++..+|+.|.+.|.. ..|.|++|..+.
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-----WyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-----WYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-----eEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 56788999999999999999986 66788888766552 69999999999999988863 478888776554
No 191
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.05 E-value=0.0094 Score=49.65 Aligned_cols=70 Identities=20% Similarity=0.310 Sum_probs=45.3
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcc-cCCe---EEEEEeecCC-CC-CcccEEEEEecCHHHHHHHHHHhCCCccC
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEP-IGDV---FEVRLMKDKE-SG-ESKGFAFVSFRSKEFAKKAIDELHSKELK 174 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~-~G~i---~~v~~~~~~~-~~-~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 174 (437)
....|.||+||+.+|++++.+.+.. ++.. ..+.-..... .. ....-|||.|.+.+++...+..++|..|.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 4568999999999999999998876 6655 3333112111 11 11224999999999999999999987654
No 192
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.01 E-value=0.036 Score=36.78 Aligned_cols=53 Identities=26% Similarity=0.455 Sum_probs=43.0
Q ss_pred CeEEEcCCCcCCCHHHHHHhhccc----CCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHh
Q 013716 107 SEVFIGGLPKDASEEDLRDLCEPI----GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL 168 (437)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~----G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l 168 (437)
..|+|+++. +++.++|+.+|..| + ...|.-+-|. .|-|.|.+...|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 359999984 58889999999998 4 4566666554 4999999999999999754
No 193
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.97 E-value=0.051 Score=38.14 Aligned_cols=55 Identities=24% Similarity=0.482 Sum_probs=40.6
Q ss_pred CeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC
Q 013716 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170 (437)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~ 170 (437)
...+|. .|..+...||.++|+.||.|.--.| -+ ..|||.....+.|..++..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi-~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI-ND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEEEEEE-CT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEEEEEE-cC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 445555 9999999999999999998854444 32 2699999999999999987753
No 194
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.85 E-value=0.035 Score=46.40 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=47.1
Q ss_pred CHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcC--CceeCCeEEEEEeccCCC
Q 013716 295 STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE--KYEIDGQVLEVVLAKPQT 361 (437)
Q Consensus 295 t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~i~g~~l~v~~a~~~~ 361 (437)
....|+.+|..|+.+..+..++.- +-..|.|.+.+.|.+|...|+ +..|.|..|+|.|+....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF----rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF----RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT----TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC----CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 457899999999988887776655 458999999999999999999 999999999999995443
No 195
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=95.79 E-value=0.026 Score=57.41 Aligned_cols=29 Identities=17% Similarity=0.355 Sum_probs=25.2
Q ss_pred CcccEEEEEecCHHHHHHHHHHhCCCccC
Q 013716 146 ESKGFAFVSFRSKEFAKKAIDELHSKELK 174 (437)
Q Consensus 146 ~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 174 (437)
.-+||-||+-.....+..||+.+-+....
T Consensus 208 ~lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 208 HLKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred ccceeEEEEechhHHHHHHHhhhhhheec
Confidence 45899999999999999999988777665
No 196
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.74 E-value=0.029 Score=46.79 Aligned_cols=78 Identities=10% Similarity=0.029 Sum_probs=51.1
Q ss_pred cceEEEecCCCCCCHHHHHHHHhc-cCCe---eEEE--eCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCC----
Q 013716 282 VKALYVKNIPDNTSTEKIKELFQR-HGEV---TKVV--MPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDG---- 349 (437)
Q Consensus 282 ~~~l~V~nLp~~~t~~~L~~~f~~-~G~v---~~v~--i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g---- 349 (437)
..+|.|++||+.+|+++++..++. ++.. ..+. ........ -.-|||.|.+.+++..-...++|+.|-+
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~ 86 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGN 86 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCC
Confidence 358999999999999999997776 5544 2232 21111111 3459999999999999999999987753
Q ss_pred -eEEEEEeccC
Q 013716 350 -QVLEVVLAKP 359 (437)
Q Consensus 350 -~~l~v~~a~~ 359 (437)
....|.+|.-
T Consensus 87 ~~~~~VE~Apy 97 (176)
T PF03467_consen 87 EYPAVVEFAPY 97 (176)
T ss_dssp EEEEEEEE-SS
T ss_pred CcceeEEEcch
Confidence 3667777754
No 197
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.71 E-value=0.0073 Score=56.16 Aligned_cols=75 Identities=12% Similarity=0.246 Sum_probs=61.5
Q ss_pred ceEEEecCCCCC-CHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCCC
Q 013716 283 KALYVKNIPDNT-STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (437)
Q Consensus 283 ~~l~V~nLp~~~-t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 361 (437)
+.|-+.-+|+.+ +-++|..+|.+||.|..|.|.... --|.|+|.+..+|-+|.. .++..|++|.|+|.|.++..
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~----~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS----LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCch----hhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 455566666655 457899999999999999887663 359999999999988876 58999999999999998854
Q ss_pred C
Q 013716 362 D 362 (437)
Q Consensus 362 ~ 362 (437)
.
T Consensus 448 ~ 448 (526)
T KOG2135|consen 448 V 448 (526)
T ss_pred c
Confidence 3
No 198
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.62 E-value=0.14 Score=38.82 Aligned_cols=75 Identities=12% Similarity=0.120 Sum_probs=55.2
Q ss_pred eEEEecCCCCCCHHHHHHHHhccC-CeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCC---eEEEEEecc
Q 013716 284 ALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG---QVLEVVLAK 358 (437)
Q Consensus 284 ~l~V~nLp~~~t~~~L~~~f~~~G-~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g---~~l~v~~a~ 358 (437)
.+.+-..|+.++-..|..+.+.+- .|..++|+++...++-.++++|.+..+|..-...+||+.|+. -.++|-|..
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~ChvvfV~ 93 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCHVVFVK 93 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeEEEEEE
Confidence 344444555556666766666544 577899999887667789999999999999999999998875 345555543
No 199
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.54 E-value=0.11 Score=39.26 Aligned_cols=67 Identities=19% Similarity=0.333 Sum_probs=48.8
Q ss_pred CeEEEcCC-CcCCCHHHHHHhhcccC-CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCC
Q 013716 107 SEVFIGGL-PKDASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (437)
Q Consensus 107 ~~l~v~nL-p~~~t~~~l~~~f~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 175 (437)
++|.|=-. |.-++.+.|..+...+- .|..++|+++. ..++-.+.+.|++.+.|......+||+.+..
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34444444 45555556665555554 67889998875 3467789999999999999999999988763
No 200
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.40 E-value=0.074 Score=37.34 Aligned_cols=54 Identities=20% Similarity=0.308 Sum_probs=39.9
Q ss_pred eEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCC
Q 013716 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK 344 (437)
Q Consensus 284 ~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 344 (437)
..+|. .|..+-..+|.++|+.||.|. |..+.+ ..|||...+.+.|..|+..+.-
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-----TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-----TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-----TEEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-----CcEEEEeecHHHHHHHHHHhcc
Confidence 45555 999999999999999999875 333344 3699999999999999988763
No 201
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.00 E-value=0.0077 Score=53.85 Aligned_cols=78 Identities=24% Similarity=0.437 Sum_probs=62.1
Q ss_pred ceEEEecCCCCCCHHHH---HHHHhccCCeeEEEeCCCCC--CC---ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEE
Q 013716 283 KALYVKNIPDNTSTEKI---KELFQRHGEVTKVVMPPGKS--GK---RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L---~~~f~~~G~v~~v~i~~~~~--~~---~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 354 (437)
.-+||-+|+..+..+.+ ...|.+||.|..|.+..+.. .+ ..-++|+|...++|..||...+|..++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 45778888877655554 35688999999999988662 11 344899999999999999999999999999888
Q ss_pred EeccCC
Q 013716 355 VLAKPQ 360 (437)
Q Consensus 355 ~~a~~~ 360 (437)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 887654
No 202
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=94.96 E-value=0.051 Score=57.02 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=10.4
Q ss_pred CCHHHHHHhhcccC
Q 013716 118 ASEEDLRDLCEPIG 131 (437)
Q Consensus 118 ~t~~~l~~~f~~~G 131 (437)
.|-++|..++..+-
T Consensus 426 ~s~eel~~lL~~~~ 439 (840)
T PF04147_consen 426 SSHEELLELLDGYS 439 (840)
T ss_pred CCHHHHHHHHhcCC
Confidence 36778888888764
No 203
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.80 E-value=0.015 Score=52.02 Aligned_cols=80 Identities=24% Similarity=0.414 Sum_probs=62.0
Q ss_pred CeEEEcCCCcCCCHHHHH---HhhcccCCeEEEEEeecCC--CC-CcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 013716 107 SEVFIGGLPKDASEEDLR---DLCEPIGDVFEVRLMKDKE--SG-ESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (437)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~---~~f~~~G~i~~v~~~~~~~--~~-~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 180 (437)
.-+||-+|+..+..+.+. .+|.+||.|..|.+.++.. ++ ...--+||+|...++|..||...++..+.|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 457888898877665554 4899999999998877652 11 11123899999999999999999999999999877
Q ss_pred eecccc
Q 013716 181 SLSETK 186 (437)
Q Consensus 181 ~~~~~~ 186 (437)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 776654
No 204
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.78 E-value=0.019 Score=53.55 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=61.4
Q ss_pred CCCeEEEcCCCcCC-CHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 105 NGSEVFIGGLPKDA-SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 105 ~~~~l~v~nLp~~~-t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
..+.|-+.-.|+.+ |-.+|..+|.+||.|..|.+-. +.--|.|+|.+...|-.|. ..++..|++|.|+|.|.
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~------~~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~wh 443 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY------SSLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWH 443 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccC------chhhheeeeeccccccchh-ccccceecCceeEEEEe
Confidence 44556666666664 6778999999999999998733 3336999999999998888 56999999999999998
Q ss_pred cccc
Q 013716 184 ETKN 187 (437)
Q Consensus 184 ~~~~ 187 (437)
.+..
T Consensus 444 nps~ 447 (526)
T KOG2135|consen 444 NPSP 447 (526)
T ss_pred cCCc
Confidence 8754
No 205
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.61 E-value=0.1 Score=48.67 Aligned_cols=68 Identities=7% Similarity=0.167 Sum_probs=60.9
Q ss_pred cceEEEecCCCCCCHHHHHHHHhccC-CeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCC
Q 013716 282 VKALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349 (437)
Q Consensus 282 ~~~l~V~nLp~~~t~~~L~~~f~~~G-~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g 349 (437)
.+.|+|-.+|..++-.||..|+..|- .|..|+|+++....+-.++|.|.+.++|..-...+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 57899999999999999999998865 578999999776667789999999999999999999998875
No 206
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.55 E-value=0.096 Score=48.75 Aligned_cols=69 Identities=17% Similarity=0.395 Sum_probs=59.9
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhccc-CCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCC
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPI-GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~-G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 175 (437)
.++.|.|--+|..+|..||..|+..+ -.|..++|+++. -.++-.+.|.|++.++|....+.+||+.|..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 37899999999999999999998654 478999999975 3456679999999999999999999998763
No 207
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.86 E-value=0.27 Score=34.37 Aligned_cols=59 Identities=17% Similarity=0.263 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHhccC-----CeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 292 DNTSTEKIKELFQRHG-----EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 292 ~~~t~~~L~~~f~~~G-----~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
..++..+|..++...+ .|-.|.|... |+||+- ..+.|..++..|++..+.|++|+|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~------~S~vev-~~~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN------FSFVEV-PEEVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-------EEEEE--TT-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee------EEEEEE-CHHHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 5678888988888764 3557777654 799998 566899999999999999999999875
No 208
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=93.60 E-value=0.19 Score=42.01 Aligned_cols=60 Identities=23% Similarity=0.293 Sum_probs=46.1
Q ss_pred CHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC--CCccCCeEEEEeecc
Q 013716 119 SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH--SKELKGKTIRCSLSE 184 (437)
Q Consensus 119 t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--~~~~~g~~i~v~~~~ 184 (437)
....|+.+|..|+.+..+.+++.. +-..|.|.+.+.|.+|...|+ +..+.|..++|.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 347899999999999888887654 258999999999999999999 899999999998874
No 209
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.59 E-value=0.19 Score=44.33 Aligned_cols=74 Identities=31% Similarity=0.445 Sum_probs=54.7
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeE-EEEEeccCCC
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQV-LEVVLAKPQT 361 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~-l~v~~a~~~~ 361 (437)
.=|.|-+.|..-. .-|..+|++||.|.+.... .++ .+-+|.|.+.-+|.+||.+ ||..|+|.. |-|.-+..+.
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~ng--NwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--SNG--NWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecC--CCC--ceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCHH
Confidence 3466777775543 4577899999999887766 222 4889999999999999996 999998754 5566555444
Q ss_pred C
Q 013716 362 D 362 (437)
Q Consensus 362 ~ 362 (437)
.
T Consensus 272 v 272 (350)
T KOG4285|consen 272 V 272 (350)
T ss_pred H
Confidence 3
No 210
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=93.52 E-value=0.29 Score=46.91 Aligned_cols=99 Identities=8% Similarity=0.152 Sum_probs=77.5
Q ss_pred HHHHHHHHHhCCCccCCeEEEEeeccccccccccCCCCCCCHHHHHHHHHh-hCCceeEEEEeeCCCCCCCCccEEEEEe
Q 013716 159 EFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED-VGPGVETIELIKDPQNPSRNRGFSFVLY 237 (437)
Q Consensus 159 ~~A~~a~~~l~~~~~~g~~i~v~~~~~~~~l~v~nl~~~~~~~~l~~~f~~-~g~~i~~~~~~~d~~~~~~~~g~~fv~f 237 (437)
+-...+|..+.+..+..+-++|+.....+.+.++-||..+..+.++.+|.. -.+.+.+|.+-.+ .--||+|
T Consensus 148 dLI~Evlresp~VqvDekgekVrp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N--------~nWyITf 219 (684)
T KOG2591|consen 148 DLIVEVLRESPNVQVDEKGEKVRPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN--------DNWYITF 219 (684)
T ss_pred HHHHHHHhcCCCceeccCccccccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec--------CceEEEe
Confidence 444566666777778888889998888888899999999999999999986 2233666666443 2468999
Q ss_pred cChHHHHHHHHHHhccCcccCCCCCeee
Q 013716 238 YNNACADYSRQKMLNANFKLDGNTPTIS 265 (437)
Q Consensus 238 ~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 265 (437)
.+..+|+.|++.|....-.+.|+.|...
T Consensus 220 esd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 220 ESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred ecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 9999999999999877667777766543
No 211
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.21 E-value=0.081 Score=51.71 Aligned_cols=71 Identities=24% Similarity=0.288 Sum_probs=62.4
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
....++||+|+...+..+-++.++..+|.|..+.... |||..|..+..+.+|+..|+-..++|..+.+...
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 4456899999999999999999999999988775543 8999999999999999999999999988877653
No 212
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=92.93 E-value=0.12 Score=47.86 Aligned_cols=8 Identities=25% Similarity=0.418 Sum_probs=4.2
Q ss_pred CCHHHHHH
Q 013716 118 ASEEDLRD 125 (437)
Q Consensus 118 ~t~~~l~~ 125 (437)
+|.+++..
T Consensus 190 LT~eDF~k 197 (324)
T PF05285_consen 190 LTPEDFAK 197 (324)
T ss_pred CCHHHHHH
Confidence 45665543
No 213
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.47 E-value=0.17 Score=50.84 Aligned_cols=77 Identities=17% Similarity=0.193 Sum_probs=64.4
Q ss_pred eEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCcee--CCeEEEEEeccCCC
Q 013716 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI--DGQVLEVVLAKPQT 361 (437)
Q Consensus 284 ~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i--~g~~l~v~~a~~~~ 361 (437)
+..+.|.+-..+-.-|..+|+.||.|..+..+++- ..|.|.|.+.+.|..|+.+|+|+.+ -|-+.+|.||+.-.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~----N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL----NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc----cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 34556666667778899999999999999988776 4699999999999999999999844 58899999998765
Q ss_pred CCC
Q 013716 362 DKK 364 (437)
Q Consensus 362 ~~~ 364 (437)
...
T Consensus 376 ~~e 378 (1007)
T KOG4574|consen 376 MYE 378 (1007)
T ss_pred ccc
Confidence 543
No 214
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.44 E-value=0.39 Score=42.41 Aligned_cols=64 Identities=17% Similarity=0.288 Sum_probs=48.6
Q ss_pred CeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 013716 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (437)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 178 (437)
.=|-|-++|+..+- -|..+|.+||.|+..... +.-.+-+|.|.+.-+|.+||. .+++.|.|..+
T Consensus 198 ~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALs-kng~ii~g~vm 261 (350)
T KOG4285|consen 198 TWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVM 261 (350)
T ss_pred ceEEEeccCccchh-HHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhh-hcCeeeccceE
Confidence 34666677765443 567799999999877653 234488999999999999994 59999887654
No 215
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.37 E-value=3.2 Score=39.31 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=17.2
Q ss_pred HHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHH
Q 013716 202 EFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACAD 244 (437)
Q Consensus 202 ~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~ 244 (437)
-|-.+|.-||+ | ...|-.|.|.+...+.
T Consensus 246 ~lG~I~EiFGp-V--------------~~P~YvvRFnS~~e~~ 273 (483)
T KOG2236|consen 246 ALGQIFEIFGP-V--------------KNPYYVVRFNSEEEIS 273 (483)
T ss_pred cchhhhhhhcc-c--------------CCceEEEecCchhhhh
Confidence 34566777776 2 2336667787776654
No 216
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.31 E-value=0.089 Score=52.82 Aligned_cols=72 Identities=29% Similarity=0.412 Sum_probs=61.0
Q ss_pred CeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCcc--CCeEEEEeecc
Q 013716 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL--KGKTIRCSLSE 184 (437)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--~g~~i~v~~~~ 184 (437)
.+..+.|.+-..|-.-|..+|.+||.|.+++.+++.+ .|.|.|.+.+.|..|+.+|+|+.+ .|-+.+|..++
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 3455566666778889999999999999999988765 799999999999999999999875 47788888776
No 217
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=91.58 E-value=3.3 Score=42.37 Aligned_cols=62 Identities=10% Similarity=0.175 Sum_probs=48.5
Q ss_pred CCCCHHHHHHHHhccCCee-----EEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCC
Q 013716 292 DNTSTEKIKELFQRHGEVT-----KVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (437)
Q Consensus 292 ~~~t~~~L~~~f~~~G~v~-----~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (437)
..++...|-.++..-+.|. .|.|.. .|.||+. ....|...+..|++..+.|+.|.|..+...
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~------~~s~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLFA------SHSTIEL-PKGMPGEVLQHFTRTRILNKPMNMQLLGDA 563 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEeC------CceEEEc-ChhhHHHHHHHhccccccCCceEEEECCCC
Confidence 5688888888887765544 556644 3789998 567788999999999999999999988633
No 218
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=91.46 E-value=0.3 Score=48.88 Aligned_cols=19 Identities=26% Similarity=0.158 Sum_probs=10.1
Q ss_pred EEEcCCCcCCCHHHHHHhh
Q 013716 109 VFIGGLPKDASEEDLRDLC 127 (437)
Q Consensus 109 l~v~nLp~~~t~~~l~~~f 127 (437)
..++.+|--++.++...++
T Consensus 958 k~~~d~pvFAsaeey~hll 976 (988)
T KOG2038|consen 958 KGLNDSPVFASAEEYAHLL 976 (988)
T ss_pred hccccchhhhhHHHHHHHh
Confidence 4455666555555554444
No 219
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.38 E-value=1.3 Score=29.93 Aligned_cols=56 Identities=7% Similarity=0.162 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEE
Q 013716 292 DNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (437)
Q Consensus 292 ~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 354 (437)
..++-++|+..|..|+ ...|. .++. | -||.|.+..+|.+|....+|..+.+..|.+
T Consensus 10 ~~~~v~d~K~~Lr~y~-~~~I~--~d~t---G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYR-WDRIR--DDRT---G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCccHHHHHHHHhcCC-cceEE--ecCC---E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 3577889999999984 44444 3443 3 489999999999999999999888777654
No 220
>PF04147 Nop14: Nop14-like family ; InterPro: IPR007276 Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production [].
Probab=91.18 E-value=0.3 Score=51.45 Aligned_cols=8 Identities=13% Similarity=0.119 Sum_probs=3.3
Q ss_pred eEEEEEec
Q 013716 350 QVLEVVLA 357 (437)
Q Consensus 350 ~~l~v~~a 357 (437)
++|.+.-.
T Consensus 743 ~PL~l~~~ 750 (840)
T PF04147_consen 743 RPLQLQKH 750 (840)
T ss_pred CCceeccC
Confidence 34444333
No 221
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.09 E-value=0.14 Score=46.89 Aligned_cols=55 Identities=24% Similarity=0.303 Sum_probs=44.6
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCC-eEEEEEeecCCCCCcccEEEEEecCHHHHHHHHH
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGD-VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~-i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~ 166 (437)
-...|-|.++|.....++|...|..|+. =..|+.+-+. .||-.|.+...|..||.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhh
Confidence 4578999999999999999999999973 3445444443 59999999999999994
No 222
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.08 E-value=1.1 Score=43.40 Aligned_cols=80 Identities=15% Similarity=0.275 Sum_probs=62.2
Q ss_pred cCcceEEEecCCCC-CCHHHHHHHHhcc----CCeeEEEeCCCCC-----------------------------------
Q 013716 280 SQVKALYVKNIPDN-TSTEKIKELFQRH----GEVTKVVMPPGKS----------------------------------- 319 (437)
Q Consensus 280 ~~~~~l~V~nLp~~-~t~~~L~~~f~~~----G~v~~v~i~~~~~----------------------------------- 319 (437)
..+++|-|.||.|. +.-.+|..+|+.| |.|.+|.|.+..-
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 45679999999965 6778999998865 5888988854321
Q ss_pred ------------CC-c-cEEEEEeCCHHHHHHHHHhcCCceeC--CeEEEEEeccC
Q 013716 320 ------------GK-R-DFGFIHYAERSSALKAVKDTEKYEID--GQVLEVVLAKP 359 (437)
Q Consensus 320 ------------~~-~-g~afV~f~~~~~A~~A~~~l~g~~i~--g~~l~v~~a~~ 359 (437)
++ + -||.|+|.+.+.|......|.|..|. +..|-++|...
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPD 307 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPD 307 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCC
Confidence 11 1 26999999999999999999999987 56777777643
No 223
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=90.93 E-value=1.3 Score=30.04 Aligned_cols=55 Identities=13% Similarity=0.200 Sum_probs=42.8
Q ss_pred CCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 013716 117 DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (437)
Q Consensus 117 ~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 180 (437)
.++-++|+..++.|+-. +|+.++ | | -||.|.+..+|++|....++..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 47889999999999732 333343 2 2 589999999999999999998888776643
No 224
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=89.97 E-value=1.4 Score=30.66 Aligned_cols=59 Identities=22% Similarity=0.428 Sum_probs=35.4
Q ss_pred cCCCHHHHHHhhcccC-----CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 116 KDASEEDLRDLCEPIG-----DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 116 ~~~t~~~l~~~f~~~G-----~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
..++..+|..++...+ .|-.|.|..+ |+||+-... .|..++..|++..+.|+++.|..+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3577888888886553 4667777543 789988765 788888899999999999998764
No 225
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=89.90 E-value=0.19 Score=49.23 Aligned_cols=70 Identities=20% Similarity=0.221 Sum_probs=61.5
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
++..+|||+||...+..+-++.++..||-|.+++... |+|..|.....+..|+..++...+.|..+.+..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 4567899999999999999999999999988776533 899999999999999999998889888877655
No 226
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=89.39 E-value=15 Score=32.77 Aligned_cols=170 Identities=15% Similarity=0.225 Sum_probs=101.5
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCC------CCCCCCccEEEEEecChHHHHHHH----HHHhccCcc
Q 013716 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDP------QNPSRNRGFSFVLYYNNACADYSR----QKMLNANFK 256 (437)
Q Consensus 187 ~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~------~~~~~~~g~~fv~f~~~~~a~~a~----~~~~~~~~~ 256 (437)
+.|.+.|+...++--.+...|-+||+ |+++.++.+. ...-+......+.|-+.+.+..-. +.+..-+..
T Consensus 16 RSLLfeNv~~sidLh~Fl~~fv~~~p-IESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 16 RSLLFENVNNSIDLHSFLTKFVKFGP-IESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred HHHHHhhccccccHHHHHHHhhccCc-eeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 67888999999999999999999999 9999999863 112233456778898888775433 333333334
Q ss_pred cCCCCCeeeecCCCCC---------CC-----------CcccccCcceEEEecCCCCCCHHH-HHHHH---hccC----C
Q 013716 257 LDGNTPTISWADPKST---------PD-----------HSAAASQVKALYVKNIPDNTSTEK-IKELF---QRHG----E 308 (437)
Q Consensus 257 ~~~~~~~v~~~~~~~~---------~~-----------~~~~~~~~~~l~V~nLp~~~t~~~-L~~~f---~~~G----~ 308 (437)
+....+.+.+..-... .. .......++.|.|.=- ..+..++ +.+.+ ..-+ .
T Consensus 95 L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n~RYV 173 (309)
T PF10567_consen 95 LKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNNKRYV 173 (309)
T ss_pred cCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCCceEE
Confidence 5555565555431100 00 0011122466666433 3343333 33332 2222 4
Q ss_pred eeEEEeCCCCCCC----ccEEEEEeCCHHHHHHHHHhcCCceeC---CeEEEEEecc
Q 013716 309 VTKVVMPPGKSGK----RDFGFIHYAERSSALKAVKDTEKYEID---GQVLEVVLAK 358 (437)
Q Consensus 309 v~~v~i~~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~i~---g~~l~v~~a~ 358 (437)
|+.|.|+...... +.||.++|-+..-|...+.-|.-+... .+...|+.+.
T Consensus 174 lEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~~ 230 (309)
T PF10567_consen 174 LESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQP 230 (309)
T ss_pred EEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEeccC
Confidence 6678777543322 789999999999999999877643222 3444555443
No 227
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=87.74 E-value=0.37 Score=48.86 Aligned_cols=13 Identities=15% Similarity=0.227 Sum_probs=6.9
Q ss_pred ChHHHHHHHHHHh
Q 013716 239 NNACADYSRQKML 251 (437)
Q Consensus 239 ~~~~a~~a~~~~~ 251 (437)
+..++..|+.++.
T Consensus 400 SA~D~v~al~ALL 412 (622)
T PF02724_consen 400 SASDVVYALTALL 412 (622)
T ss_pred eHHHHHHHHHHHh
Confidence 4455555555554
No 228
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=85.91 E-value=3.5 Score=29.75 Aligned_cols=56 Identities=18% Similarity=0.394 Sum_probs=40.2
Q ss_pred EEEEecCHHHHHHHHHHhCC-CccCCeEEEEe---------------eccccccccccCCCCCCCHHHHHHH
Q 013716 151 AFVSFRSKEFAKKAIDELHS-KELKGKTIRCS---------------LSETKNRLFIGNVPKNWTEDEFRKV 206 (437)
Q Consensus 151 afV~f~~~~~A~~a~~~l~~-~~~~g~~i~v~---------------~~~~~~~l~v~nl~~~~~~~~l~~~ 206 (437)
|.|+|....-|++.++.-.- ..+.+..+.|. ..-.++++.|.+||...+++.|++.
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~ 72 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDK 72 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheee
Confidence 68999999999999953221 12344444443 3345689999999999999988764
No 229
>PF05285 SDA1: SDA1; InterPro: IPR007949 This domain consists of several SDA1 protein homologues. SDA1 is a Saccharomyces cerevisiae protein which is involved in the control of the actin cytoskeleton. The protein is essential for cell viability and is localised in the nucleus [].
Probab=84.86 E-value=0.6 Score=43.22 Aligned_cols=7 Identities=0% Similarity=0.074 Sum_probs=2.8
Q ss_pred CCHHHHH
Q 013716 198 WTEDEFR 204 (437)
Q Consensus 198 ~~~~~l~ 204 (437)
++..+|.
T Consensus 231 v~~~dIe 237 (324)
T PF05285_consen 231 VDPSDIE 237 (324)
T ss_pred CCHHHHH
Confidence 3444443
No 230
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=84.77 E-value=5.4 Score=41.52 Aligned_cols=17 Identities=12% Similarity=0.348 Sum_probs=12.5
Q ss_pred cCCCCCCHHHHHHHHhc
Q 013716 289 NIPDNTSTEKIKELFQR 305 (437)
Q Consensus 289 nLp~~~t~~~L~~~f~~ 305 (437)
+.|..+....|+++|+.
T Consensus 446 ~~pl~~~~~eLrKyF~~ 462 (1024)
T KOG1999|consen 446 KGPLEVPASELRKYFEP 462 (1024)
T ss_pred CCccccchHhhhhhccC
Confidence 34677777888888864
No 231
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=84.58 E-value=0.69 Score=46.97 Aligned_cols=16 Identities=13% Similarity=0.050 Sum_probs=7.8
Q ss_pred ecChHHHHHHHHHHhc
Q 013716 237 YYNNACADYSRQKMLN 252 (437)
Q Consensus 237 f~~~~~a~~a~~~~~~ 252 (437)
|...-.|..+...+..
T Consensus 395 y~~~lSA~D~v~al~A 410 (622)
T PF02724_consen 395 YRGKLSASDVVYALTA 410 (622)
T ss_pred CCCceeHHHHHHHHHH
Confidence 3444555555555443
No 232
>KOG2141 consensus Protein involved in high osmolarity signaling pathway [Signal transduction mechanisms]
Probab=84.39 E-value=0.94 Score=45.20 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=11.2
Q ss_pred EEEEeCCHHHHHHHHHhcCCceeCC
Q 013716 325 GFIHYAERSSALKAVKDTEKYEIDG 349 (437)
Q Consensus 325 afV~f~~~~~A~~A~~~l~g~~i~g 349 (437)
-|+..-+.++-..|+.+|=...+.|
T Consensus 624 IFcsImsaeDyiDAFEklLkL~LK~ 648 (822)
T KOG2141|consen 624 IFCSIMSAEDYIDAFEKLLKLSLKG 648 (822)
T ss_pred heeeeecchHHHHHHHHHHhccCCC
Confidence 3444445555555554443333333
No 233
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=83.47 E-value=4.6 Score=41.86 Aligned_cols=14 Identities=14% Similarity=0.233 Sum_probs=6.7
Q ss_pred CCCccEEEEEecCh
Q 013716 227 SRNRGFSFVLYYNN 240 (437)
Q Consensus 227 ~~~~g~~fv~f~~~ 240 (437)
++.++|+--.|.+.
T Consensus 899 g~q~~~~g~kfsdh 912 (1282)
T KOG0921|consen 899 GTQRKFAGNKFSDH 912 (1282)
T ss_pred cchhhccccccccc
Confidence 44455554444443
No 234
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=82.39 E-value=3.1 Score=39.39 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=8.3
Q ss_pred CeEEEcCCCcCCCHHHH
Q 013716 107 SEVFIGGLPKDASEEDL 123 (437)
Q Consensus 107 ~~l~v~nLp~~~t~~~l 123 (437)
.+||-+-....+..++|
T Consensus 317 Ykvftr~fDe~v~aeel 333 (620)
T COG4547 317 YKVFTREFDEIVLAEEL 333 (620)
T ss_pred ccccchhhhhhhhHHHh
Confidence 44565555544444433
No 235
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=82.02 E-value=1.1 Score=32.25 Aligned_cols=71 Identities=11% Similarity=0.174 Sum_probs=44.1
Q ss_pred EEEEecChHHHHHHHHHHhccCcccCCCCCeeeecCCCC---CCCCcccccCcceEEEecCCCCCCHHHHHHHHh
Q 013716 233 SFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS---TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQ 304 (437)
Q Consensus 233 ~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~ 304 (437)
|+|+|....-|...+++ ....+.+.+..+.+....-.. ..-........++|.|.|||..++++.|++.+.
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 57899999888866653 223344455555444332221 112223334568999999999999999986543
No 236
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=81.53 E-value=1.3 Score=35.92 Aligned_cols=96 Identities=14% Similarity=0.138 Sum_probs=64.0
Q ss_pred CccEEEEEecChHHHHHHHHHHhccCcccCCCCCeeeecCCCCCCCCcccccCcceEEEecCCCC-CCHHHHHHHHhccC
Q 013716 229 NRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDN-TSTEKIKELFQRHG 307 (437)
Q Consensus 229 ~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~t~~~L~~~f~~~G 307 (437)
..++..+.|.+.+++.+++. ..+..+.+..+.+..-.+..............=|.|.|||.. .+++-|+.+.+.+|
T Consensus 54 ~~~~fl~~F~~~~d~~~vl~---~~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG 130 (153)
T PF14111_consen 54 GDNLFLFQFESEEDRQRVLK---GGPWNFNGHFLILQRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIG 130 (153)
T ss_pred CCCeEEEEEEeccceeEEEe---cccccccccchhhhhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcC
Confidence 45688899999999886655 466667777776665554433222211112234778899955 78888999999999
Q ss_pred CeeEEEeCCCCCCCccEEEE
Q 013716 308 EVTKVVMPPGKSGKRDFGFI 327 (437)
Q Consensus 308 ~v~~v~i~~~~~~~~g~afV 327 (437)
.+..+........+..||-|
T Consensus 131 ~~i~vD~~t~~~~~~~~~Rv 150 (153)
T PF14111_consen 131 EPIEVDENTLKRTRLDFARV 150 (153)
T ss_pred CeEEEEcCCCCcccccEEEE
Confidence 99999876655433345444
No 237
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=81.45 E-value=1.7 Score=35.62 Aligned_cols=76 Identities=16% Similarity=0.200 Sum_probs=52.9
Q ss_pred ceEEEecCCCCCCH-----HHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCe-EEEEEe
Q 013716 283 KALYVKNIPDNTST-----EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ-VLEVVL 356 (437)
Q Consensus 283 ~~l~V~nLp~~~t~-----~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~-~l~v~~ 356 (437)
..+.+.+|+..+-. .....+|.+|-......+++.. ++.-|.|.++..|..|...++...|.|+ .+++-|
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf----rrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yf 86 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF----RRVRINFSNPEAAADARIKLHSTSFNGKNELKLYF 86 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh----ceeEEeccChhHHHHHHHHhhhcccCCCceEEEEE
Confidence 45677777754422 2334555555444444444433 4677899999999999999999999998 899988
Q ss_pred ccCCCC
Q 013716 357 AKPQTD 362 (437)
Q Consensus 357 a~~~~~ 362 (437)
+.+...
T Consensus 87 aQ~~~~ 92 (193)
T KOG4019|consen 87 AQPGHP 92 (193)
T ss_pred ccCCCc
Confidence 876544
No 238
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=81.38 E-value=0.3 Score=46.78 Aligned_cols=72 Identities=15% Similarity=0.251 Sum_probs=54.8
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCe
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK 176 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~ 176 (437)
..++||++|+++.++-.+|..+++.+--+..+-+.....-.....+.||+|.---...-|+.+||+..+...
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 457899999999999999999999987666665544333345566799999887777777777787766543
No 239
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=80.60 E-value=0.91 Score=34.85 Aligned_cols=52 Identities=23% Similarity=0.333 Sum_probs=30.3
Q ss_pred ceEEEecCCCC---------CCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHH
Q 013716 283 KALYVKNIPDN---------TSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSA 335 (437)
Q Consensus 283 ~~l~V~nLp~~---------~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A 335 (437)
.++.|.|++.. ++.+.|++.|+.|..+ +++.+.+..+.+|+++|.|..--..
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~-kv~~l~~~~gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPL-KVKPLYGKQGHTGFAIVEFNKDWSG 69 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---S-EEEEEEETTEEEEEEEEE--SSHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCc-eeEECcCCCCCcEEEEEEECCChHH
Confidence 46777888643 3557899999999765 4666677766789999999865433
No 240
>PF12253 CAF1A: Chromatin assembly factor 1 subunit A; InterPro: IPR022043 The CAF-1 or chromatin assembly factor-1 consists of three subunits, and this is the first, or A []. The A domain is uniquely required for the progression of S phase in mouse cells [], independent of its ability to promote histone deposition [] but dependent on its ability to interact with HP1 - heterochromatin protein 1-rich heterochromatin domains next to centromeres that are crucial for chromosome segregation during mitosis. This HP1-CAF-1 interaction module functions as a built-in replication control for heterochromatin, which, like a control barrier, has an impact on S-phase progression in addition to DNA-based checkpoints [].
Probab=80.49 E-value=1.4 Score=30.79 Aligned_cols=11 Identities=36% Similarity=0.486 Sum_probs=5.6
Q ss_pred Ccccccccccc
Q 013716 12 DLEEDNYMEEM 22 (437)
Q Consensus 12 ~~~~~~~~~e~ 22 (437)
+.+.+.+++|+
T Consensus 42 dyDSd~EWeE~ 52 (77)
T PF12253_consen 42 DYDSDDEWEEE 52 (77)
T ss_pred ecCCccccccC
Confidence 44555566443
No 241
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=78.57 E-value=0.5 Score=41.08 Aligned_cols=68 Identities=28% Similarity=0.472 Sum_probs=46.4
Q ss_pred CCeEEEcCCCcC------------CCHHHHHHhhcccCCeEEEEEeec-----CCCCCccc-----E---------EEEE
Q 013716 106 GSEVFIGGLPKD------------ASEEDLRDLCEPIGDVFEVRLMKD-----KESGESKG-----F---------AFVS 154 (437)
Q Consensus 106 ~~~l~v~nLp~~------------~t~~~l~~~f~~~G~i~~v~~~~~-----~~~~~~~g-----~---------afV~ 154 (437)
.-||++.+||-. -++.-|+..|..||.|..|.|+.. .-+|+..| | |||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 357999999843 267789999999999988877532 22344433 3 4566
Q ss_pred ecCHHHHHHHHHHhCCCcc
Q 013716 155 FRSKEFAKKAIDELHSKEL 173 (437)
Q Consensus 155 f~~~~~A~~a~~~l~~~~~ 173 (437)
|..-..-..|+.+|.|..|
T Consensus 229 fmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHhHHHHHHHHhcchH
Confidence 6666666677777777654
No 242
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=78.32 E-value=13 Score=27.94 Aligned_cols=108 Identities=20% Similarity=0.321 Sum_probs=65.8
Q ss_pred CCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCc--cCCeEEEEeecccccccc
Q 013716 113 GLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE--LKGKTIRCSLSETKNRLF 190 (437)
Q Consensus 113 nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~--~~g~~i~v~~~~~~~~l~ 190 (437)
=||+.+.. |-++|..=|+|.+|..+.. +.+ ..|+-.++|.. +.|. |++........++
T Consensus 10 VlPPYTnK--LSDYfeSPGKI~svItvtq-------------ypd----ndal~~~~G~lE~vDg~-i~IGs~q~~~sV~ 69 (145)
T TIGR02542 10 VLPPYTNK--LSDYFESPGKIQSVITVTQ-------------YPD----NDALLYVHGTLEQVDGN-IRIGSGQTPASVR 69 (145)
T ss_pred ecCCccch--hhHHhcCCCceEEEEEEec-------------cCC----chhhheeeeehhhccCc-EEEccCCCcccEE
Confidence 37777654 8899999999998865432 111 12332445542 3444 6666666666666
Q ss_pred ccCC---------CCCCCHHHHHHHHHhh---CCceeEEEEeeCCCCCCCCccEEEEEecChHH
Q 013716 191 IGNV---------PKNWTEDEFRKVIEDV---GPGVETIELIKDPQNPSRNRGFSFVLYYNNAC 242 (437)
Q Consensus 191 v~nl---------~~~~~~~~l~~~f~~~---g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~ 242 (437)
|.+- |+..|..+++++|+.- .. |+.-.+.+|-. ...+-..||..|.....
T Consensus 70 i~gTPsgnnv~F~PYTlT~~e~r~iF~Epm~YQG-ITReQV~rdGL-P~GsYRiCFrL~~~~~~ 131 (145)
T TIGR02542 70 IQGTPSGNNVIFPPYTLTYNELRQIFREPMVYQG-ITREQVQRDGL-PEGSYRICFRLFNATQF 131 (145)
T ss_pred EecCCCCCceecCceeeeHHHHHHHHhhhhhhcc-ccHHHHhhcCC-CCCceEEEEEEeccchh
Confidence 6443 5578999999999863 22 55555555522 23345578888876543
No 243
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=77.72 E-value=4.9 Score=35.38 Aligned_cols=49 Identities=14% Similarity=0.257 Sum_probs=36.8
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCe-EEEEEeecCCCCCcccEEEEEecCHH
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDV-FEVRLMKDKESGESKGFAFVSFRSKE 159 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i-~~v~~~~~~~~~~~~g~afV~f~~~~ 159 (437)
..+-|+|+|||.++...+|+..+.+.+.+ .++.. .-..|-||+.|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCcc
Confidence 34569999999999999999999887743 33332 234567999998753
No 244
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=77.36 E-value=5 Score=35.69 Aligned_cols=80 Identities=11% Similarity=0.249 Sum_probs=62.2
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCC--------CCC-ccEEEEEeCCHHHHHHH----HHhcC--C
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK--------SGK-RDFGFIHYAERSSALKA----VKDTE--K 344 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~--------~~~-~g~afV~f~~~~~A~~A----~~~l~--g 344 (437)
..++.|.+.|+...++-..+...|-+||.|+.|+++.+. ..+ .....+.|-+.+.+..- +++|. .
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 445789999999999999999999999999999998776 122 56788999998876543 33344 3
Q ss_pred ceeCCeEEEEEeccC
Q 013716 345 YEIDGQVLEVVLAKP 359 (437)
Q Consensus 345 ~~i~g~~l~v~~a~~ 359 (437)
..+....|+|+|..-
T Consensus 93 ~~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 93 TKLKSESLTLSFVSL 107 (309)
T ss_pred HhcCCcceeEEEEEE
Confidence 377788999988763
No 245
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=77.09 E-value=9.9 Score=33.34 Aligned_cols=79 Identities=19% Similarity=0.418 Sum_probs=48.5
Q ss_pred cceEEEecCCCCC------------CHHHHHHHHhccCCeeEEEeCCC-C-----CCC------ccE---------EEEE
Q 013716 282 VKALYVKNIPDNT------------STEKIKELFQRHGEVTKVVMPPG-K-----SGK------RDF---------GFIH 328 (437)
Q Consensus 282 ~~~l~V~nLp~~~------------t~~~L~~~f~~~G~v~~v~i~~~-~-----~~~------~g~---------afV~ 328 (437)
..+|++.+||..| ++..|+..|..||.|..|.|+.- + +++ +|| |||+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 4678888888443 45689999999999998887521 1 111 334 3455
Q ss_pred eCCHHHHHHHHHhcCCcee----CC----eEEEEEeccCC
Q 013716 329 YAERSSALKAVKDTEKYEI----DG----QVLEVVLAKPQ 360 (437)
Q Consensus 329 f~~~~~A~~A~~~l~g~~i----~g----~~l~v~~a~~~ 360 (437)
|-....-..|+..|.|..+ .+ -.++|.|.+.+
T Consensus 229 fmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 5544455556666666533 22 25667666543
No 246
>KOG0526 consensus Nucleosome-binding factor SPN, POB3 subunit [Transcription; Replication, recombination and repair; Chromatin structure and dynamics]
Probab=75.02 E-value=1.2 Score=42.82 Aligned_cols=6 Identities=50% Similarity=0.733 Sum_probs=2.3
Q ss_pred CCcCCC
Q 013716 114 LPKDAS 119 (437)
Q Consensus 114 Lp~~~t 119 (437)
-|..+|
T Consensus 535 apkra~ 540 (615)
T KOG0526|consen 535 APKRAT 540 (615)
T ss_pred CCccch
Confidence 344333
No 247
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=74.66 E-value=3 Score=40.47 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=14.0
Q ss_pred CHHHHHHHHHhcCCceeCCeEEE
Q 013716 331 ERSSALKAVKDTEKYEIDGQVLE 353 (437)
Q Consensus 331 ~~~~A~~A~~~l~g~~i~g~~l~ 353 (437)
+.+++.+|-..+....|.|++|+
T Consensus 408 SWeAkkk~Ke~~~~a~FqGKKI~ 430 (432)
T PF09073_consen 408 SWEAKKKAKEKQKIAKFQGKKIV 430 (432)
T ss_pred cHHHHHHHHHHhccCCCCCCccc
Confidence 56666666666555566666654
No 248
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=74.52 E-value=2.1 Score=42.31 Aligned_cols=21 Identities=14% Similarity=0.112 Sum_probs=12.7
Q ss_pred cccCccccccccccccccccc
Q 013716 9 DRVDLEEDNYMEEMDDDVEEQ 29 (437)
Q Consensus 9 ~~~~~~~~~~~~e~~e~~~~~ 29 (437)
=+.+++.|+||||++-.+.=.
T Consensus 517 lDYEVdSDeEWEEEepGESlS 537 (811)
T KOG4364|consen 517 LDYEVDSDEEWEEEEPGESLS 537 (811)
T ss_pred ccccccCcccccccCCCcccc
Confidence 345667777777766544433
No 249
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=74.45 E-value=13 Score=26.68 Aligned_cols=57 Identities=16% Similarity=0.146 Sum_probs=42.0
Q ss_pred EEEecCCCCCCHHHHHHHHhc-cC-CeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhc
Q 013716 285 LYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342 (437)
Q Consensus 285 l~V~nLp~~~t~~~L~~~f~~-~G-~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l 342 (437)
-|+--++..++..+|++.+.. || .|..|....-+.+. .-|||++..-..|.....++
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~-KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGE-KKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc-EEEEEEeCCCCcHHHHHHhh
Confidence 445567889999999999988 77 57777666554332 34999999888888776543
No 250
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=72.47 E-value=5.3 Score=39.60 Aligned_cols=14 Identities=14% Similarity=0.280 Sum_probs=7.9
Q ss_pred CCeEEEcCCCcCCC
Q 013716 106 GSEVFIGGLPKDAS 119 (437)
Q Consensus 106 ~~~l~v~nLp~~~t 119 (437)
...||-+-....+.
T Consensus 295 ~Y~vfTt~fDe~i~ 308 (600)
T TIGR01651 295 DYKVFTTAFDETVD 308 (600)
T ss_pred cceecchhhhhhcc
Confidence 55666666555443
No 251
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=72.46 E-value=17 Score=25.59 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=41.6
Q ss_pred eEEEecCCCCCCHHHHHHHHhc-cC-CeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhc
Q 013716 284 ALYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342 (437)
Q Consensus 284 ~l~V~nLp~~~t~~~L~~~f~~-~G-~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l 342 (437)
.-|+-.++..++..+|+..++. || .|..|....-+.+- .-|||++..-..|...-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~-KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGE-KKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCc-eEEEEEECCCCcHHHHHHhh
Confidence 3556677889999999999988 66 56777655444322 34999998888887765543
No 252
>KOG3168 consensus U1 snRNP component [Transcription]
Probab=72.40 E-value=27 Score=28.20 Aligned_cols=46 Identities=9% Similarity=0.117 Sum_probs=19.1
Q ss_pred eEEEecCC-CCCCHHHHHHHHhccCCee-EEEeCCCCCCCccEEEEEe
Q 013716 284 ALYVKNIP-DNTSTEKIKELFQRHGEVT-KVVMPPGKSGKRDFGFIHY 329 (437)
Q Consensus 284 ~l~V~nLp-~~~t~~~L~~~f~~~G~v~-~v~i~~~~~~~~g~afV~f 329 (437)
+.||+-+- ++---+-+..-|..|=.|+ .+.-..+...++.+++|..
T Consensus 25 r~~ig~~~afDkhmNlvl~dceE~r~~k~k~~~~~~~eEkr~lgLvll 72 (177)
T KOG3168|consen 25 RTFIGQFKAFDKHMNLVLQDCEEFRKIKPKNRKMTDGEEKRVLGLVLL 72 (177)
T ss_pred ceeechhhhhHHHHHHHHHHHHHHhccccccccccccceeeEEEEEEe
Confidence 45565543 3333344444454443333 1121222223355555543
No 253
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=72.33 E-value=9.1 Score=34.82 Aligned_cols=15 Identities=40% Similarity=0.594 Sum_probs=8.1
Q ss_pred CCCCCCCCCCCCCCC
Q 013716 398 TGFGVAAGFQQPMIY 412 (437)
Q Consensus 398 ~g~~~~~~~~~~~~~ 412 (437)
+|.+++++|++|..|
T Consensus 376 gG~GGGggyqqp~~~ 390 (465)
T KOG3973|consen 376 GGRGGGGGYQQPQQQ 390 (465)
T ss_pred CCCCCCCCCcCchhh
Confidence 344555566666543
No 254
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=72.06 E-value=7.3 Score=26.62 Aligned_cols=63 Identities=17% Similarity=0.314 Sum_probs=46.5
Q ss_pred HHHHHhhcccC-CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecccc
Q 013716 121 EDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (437)
Q Consensus 121 ~~l~~~f~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~ 186 (437)
++|++-|...| .|..|.-+....++.....-||++........++ +=..+.+..|.|.....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCCCC
Confidence 46888888888 7888877777766778888999988776544433 445678888888876644
No 255
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.09 E-value=4.3 Score=37.56 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=11.9
Q ss_pred EEcCCCcCCCHHHHHHhhccc
Q 013716 110 FIGGLPKDASEEDLRDLCEPI 130 (437)
Q Consensus 110 ~v~nLp~~~t~~~l~~~f~~~ 130 (437)
|---||..-+..+|...|-.+
T Consensus 354 fAq~lp~i~~p~d~y~~F~~~ 374 (514)
T KOG3130|consen 354 FAQELPTIRTPADIYRAFVDV 374 (514)
T ss_pred ccccCCccCCcchhhhhheec
Confidence 455566555666666555443
No 256
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=70.18 E-value=4.1 Score=33.45 Aligned_cols=76 Identities=17% Similarity=0.272 Sum_probs=54.6
Q ss_pred CCeEEEcCCCcCC-----CHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCe-EEE
Q 013716 106 GSEVFIGGLPKDA-----SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK-TIR 179 (437)
Q Consensus 106 ~~~l~v~nLp~~~-----t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~-~i~ 179 (437)
.+++.+.+|+..+ .......+|.+|-......+++ +.+..-|.|.+++.|..|.-.++...|.|+ .+.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 3568888887653 2223455777666555554443 445788999999999999999999999988 887
Q ss_pred Eeeccccc
Q 013716 180 CSLSETKN 187 (437)
Q Consensus 180 v~~~~~~~ 187 (437)
...+.+.+
T Consensus 84 ~yfaQ~~~ 91 (193)
T KOG4019|consen 84 LYFAQPGH 91 (193)
T ss_pred EEEccCCC
Confidence 77776543
No 257
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.03 E-value=3 Score=39.42 Aligned_cols=10 Identities=10% Similarity=0.126 Sum_probs=5.2
Q ss_pred CCCCCCHHHH
Q 013716 290 IPDNTSTEKI 299 (437)
Q Consensus 290 Lp~~~t~~~L 299 (437)
.|..+...++
T Consensus 389 dpeifDD~DF 398 (483)
T KOG2773|consen 389 DPEIFDDSDF 398 (483)
T ss_pred CccccCcHHH
Confidence 4555555544
No 258
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=67.18 E-value=6.6 Score=37.30 Aligned_cols=8 Identities=25% Similarity=0.779 Sum_probs=4.0
Q ss_pred cCCeEEEE
Q 013716 173 LKGKTIRC 180 (437)
Q Consensus 173 ~~g~~i~v 180 (437)
+.||+|.|
T Consensus 426 MrGRpItv 433 (620)
T COG4547 426 MRGRPITV 433 (620)
T ss_pred cCCcceeh
Confidence 44555544
No 259
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=67.01 E-value=4.3 Score=39.19 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=14.9
Q ss_pred CeEEEcCCCcCCCHHHHHHhh
Q 013716 107 SEVFIGGLPKDASEEDLRDLC 127 (437)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f 127 (437)
++-.|+.||--++.++-..++
T Consensus 799 rk~~lk~lpvfa~ad~ya~~l 819 (821)
T COG5593 799 RKNMLKSLPVFASADDYAQYL 819 (821)
T ss_pred HHHHHhcCCcccchHHHHHHh
Confidence 445778888888777766654
No 260
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=66.61 E-value=7.4 Score=31.88 Aligned_cols=58 Identities=24% Similarity=0.279 Sum_probs=39.5
Q ss_pred CCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCC-CCcccEEEEEecCHHHHHHHHHH
Q 013716 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES-GESKGFAFVSFRSKEFAKKAIDE 167 (437)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~-~~~~g~afV~f~~~~~A~~a~~~ 167 (437)
.+++|.. |.+...++|..+-. |.+..|...+.... ...+|..||+|.+.+.|.++++.
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 3567766 33333344444444 78888887665431 26789999999999999998854
No 261
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=65.24 E-value=12 Score=34.78 Aligned_cols=57 Identities=26% Similarity=0.347 Sum_probs=46.2
Q ss_pred EEEEecCHHHHHHHHHHhCCCccCCeEEEEeeccccccccccCCCCCCCHHHHHHHHHh
Q 013716 151 AFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIED 209 (437)
Q Consensus 151 afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~~~l~v~nl~~~~~~~~l~~~f~~ 209 (437)
|||+|.+..+|..|++.+.... .+.+.+..+.+.+.+.=.||........+|.++..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcccccccccCCChHHHHHHHHHHH
Confidence 7999999999999998655433 46668999999999999999888888888766543
No 262
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=64.72 E-value=15 Score=24.35 Aligned_cols=22 Identities=23% Similarity=0.558 Sum_probs=17.9
Q ss_pred HHHHHHHhccCCeeEEEeCCCC
Q 013716 297 EKIKELFQRHGEVTKVVMPPGK 318 (437)
Q Consensus 297 ~~L~~~f~~~G~v~~v~i~~~~ 318 (437)
.+|+++|+..|.|.-+.+-.-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~e 30 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPYE 30 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcccc
Confidence 5799999999999887775443
No 263
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=64.08 E-value=12 Score=25.45 Aligned_cols=62 Identities=16% Similarity=0.257 Sum_probs=45.4
Q ss_pred HHHHHhhcccC-CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 013716 121 EDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (437)
Q Consensus 121 ~~l~~~f~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 185 (437)
++|++.|+..| .+..+.-+....++.+...-+|+......-.. -|+=+.|.|+++.|.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46888898888 78888888887777777788888876643333 2345567888888877653
No 264
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=63.11 E-value=4.6 Score=42.29 Aligned_cols=10 Identities=20% Similarity=0.371 Sum_probs=6.2
Q ss_pred CeEEEcCCCc
Q 013716 107 SEVFIGGLPK 116 (437)
Q Consensus 107 ~~l~v~nLp~ 116 (437)
+.+||-.+|.
T Consensus 905 ~~~wvl~~Pi 914 (1096)
T TIGR00927 905 QAIYLFLLPI 914 (1096)
T ss_pred eeEeEEecch
Confidence 4567766664
No 265
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=62.91 E-value=8.4 Score=29.59 Aligned_cols=49 Identities=27% Similarity=0.344 Sum_probs=27.9
Q ss_pred eEEEcCCCcC---------CCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHH
Q 013716 108 EVFIGGLPKD---------ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKE 159 (437)
Q Consensus 108 ~l~v~nLp~~---------~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~ 159 (437)
++.|-|+|.. ++.+.|++.|..|..+. ++.+..+ .-++|++.|.|.+--
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDW 67 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCCh
Confidence 4667777654 35678999999999874 5555554 357889999998753
No 266
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=60.01 E-value=13 Score=34.62 Aligned_cols=65 Identities=12% Similarity=0.203 Sum_probs=46.0
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCC-eeEEEeCCCCCCC----ccEEEEEeCCHHHHHHHHHhcCCcee
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHGE-VTKVVMPPGKSGK----RDFGFIHYAERSSALKAVKDTEKYEI 347 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G~-v~~v~i~~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~i 347 (437)
..|.|.+||...+.+.|.+...+|-. |....+.....+. .+.|||.|...++...-...++|+.|
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 57889999999999999888877643 3333443222211 56799999999997777777777644
No 267
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=56.78 E-value=7.6 Score=40.80 Aligned_cols=12 Identities=25% Similarity=0.581 Sum_probs=5.6
Q ss_pred CcccEEEEEecC
Q 013716 146 ESKGFAFVSFRS 157 (437)
Q Consensus 146 ~~~g~afV~f~~ 157 (437)
+.+.+-.+.|--
T Consensus 929 ~~~k~y~ltFi~ 940 (1096)
T TIGR00927 929 EARKFFVITFLG 940 (1096)
T ss_pred cccceeeehHHH
Confidence 334454555543
No 268
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=55.51 E-value=8.2 Score=34.05 Aligned_cols=47 Identities=13% Similarity=0.327 Sum_probs=36.0
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCCee-EEEeCCCCCCCccEEEEEeCCHH
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHGEVT-KVVMPPGKSGKRDFGFIHYAERS 333 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~-~v~i~~~~~~~~g~afV~f~~~~ 333 (437)
.-|+++||+.++.-.+|+..+.+.+.+- ++.. .+.+|-||+.|.+..
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw----kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISW----KGHFGKCFLHFGNRK 378 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEee----ecCCcceeEecCCcc
Confidence 5699999999999999999999876542 3433 333577999998654
No 269
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=54.61 E-value=41 Score=24.11 Aligned_cols=56 Identities=14% Similarity=0.144 Sum_probs=41.5
Q ss_pred EEEcCCCcCCCHHHHHHhhcc-cC-CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHH
Q 013716 109 VFIGGLPKDASEEDLRDLCEP-IG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167 (437)
Q Consensus 109 l~v~nLp~~~t~~~l~~~f~~-~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 167 (437)
-|+=-.+..++..+|+..++. || .|..|+.+..+. ...-|||.+.....|......
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHh
Confidence 455556788999999999966 67 777777766542 233599999999888877644
No 270
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=53.05 E-value=8.9 Score=34.65 Aligned_cols=7 Identities=14% Similarity=0.112 Sum_probs=4.3
Q ss_pred CeEEEcC
Q 013716 107 SEVFIGG 113 (437)
Q Consensus 107 ~~l~v~n 113 (437)
..+|..+
T Consensus 85 ~~~F~~~ 91 (285)
T PF03896_consen 85 TILFPKP 91 (285)
T ss_pred EEEeccc
Confidence 4566666
No 271
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=52.93 E-value=10 Score=32.54 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=30.9
Q ss_pred CCCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEE
Q 013716 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVR 137 (437)
Q Consensus 101 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~ 137 (437)
+......++|+-|+|..+|++-|..+.+++|.+..+.
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 4556778899999999999999999999999654443
No 272
>PF09073 BUD22: BUD22; InterPro: IPR015158 BUD22 has been shown in yeast to be a nuclear protein involved in bud-site selection. It plays a role in positioning the proximal bud pole signal [].
Probab=51.09 E-value=24 Score=34.28 Aligned_cols=7 Identities=43% Similarity=0.605 Sum_probs=3.4
Q ss_pred HHHHHHH
Q 013716 159 EFAKKAI 165 (437)
Q Consensus 159 ~~A~~a~ 165 (437)
+-|+++|
T Consensus 321 QrAR~~i 327 (432)
T PF09073_consen 321 QRARRAI 327 (432)
T ss_pred HHHHHHH
Confidence 3455554
No 273
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.79 E-value=1e+02 Score=29.00 Aligned_cols=54 Identities=15% Similarity=0.205 Sum_probs=44.4
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCCe-eEEEeCCCCCCCccEEEEEeCCHHHHHHHHHh
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHGEV-TKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G~v-~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~ 341 (437)
..|-|.++|...-.++|...|+.|+.= -.|.++.+. .||-.|.+...|..||-.
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-----halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-----HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-----eeEEeecchHHHHHHhhc
Confidence 678999999888889999999998743 356665554 699999999999999974
No 274
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=50.26 E-value=56 Score=22.96 Aligned_cols=56 Identities=14% Similarity=0.154 Sum_probs=40.9
Q ss_pred EEEcCCCcCCCHHHHHHhhcc-cC-CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHH
Q 013716 109 VFIGGLPKDASEEDLRDLCEP-IG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDE 167 (437)
Q Consensus 109 l~v~nLp~~~t~~~l~~~f~~-~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~ 167 (437)
-|+-.++..++..+|+..++. || .|..|+.+.-+. ...-|||.+.....|...-..
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHh
Confidence 566677889999999998866 66 677777655431 223599999988888776544
No 275
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=48.50 E-value=12 Score=33.74 Aligned_cols=15 Identities=7% Similarity=0.062 Sum_probs=5.8
Q ss_pred eEEEecCCCCCCHHH
Q 013716 284 ALYVKNIPDNTSTEK 298 (437)
Q Consensus 284 ~l~V~nLp~~~t~~~ 298 (437)
+|-|--.+..++.+.
T Consensus 193 TV~IvE~~~~~D~e~ 207 (285)
T PF03896_consen 193 TVTIVEPESGFDPET 207 (285)
T ss_pred eEEEeecCCCcChhh
Confidence 343333333344443
No 276
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=47.30 E-value=77 Score=29.80 Aligned_cols=79 Identities=18% Similarity=0.351 Sum_probs=57.8
Q ss_pred cCcceEEEecCCCC-CCHHHHHHHHhcc----CCeeEEEeCCCCC-----------------------------------
Q 013716 280 SQVKALYVKNIPDN-TSTEKIKELFQRH----GEVTKVVMPPGKS----------------------------------- 319 (437)
Q Consensus 280 ~~~~~l~V~nLp~~-~t~~~L~~~f~~~----G~v~~v~i~~~~~----------------------------------- 319 (437)
..+++|-|-||.|. +...+|..+|+.| |.|..|.|.+..-
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn~ 223 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDNV 223 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCccc
Confidence 45678999999965 6778899998865 4677777642210
Q ss_pred -------------CCcc-------------------EEEEEeCCHHHHHHHHHhcCCceeCC--eEEEEEecc
Q 013716 320 -------------GKRD-------------------FGFIHYAERSSALKAVKDTEKYEIDG--QVLEVVLAK 358 (437)
Q Consensus 320 -------------~~~g-------------------~afV~f~~~~~A~~A~~~l~g~~i~g--~~l~v~~a~ 358 (437)
+-+| ||.|+|.+...+......+.|..+.. ..+.++|..
T Consensus 224 ~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvP 296 (622)
T COG5638 224 FSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVP 296 (622)
T ss_pred hhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecC
Confidence 0012 69999999999999999999987764 566677754
No 277
>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus
Probab=47.20 E-value=40 Score=27.56 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=11.8
Q ss_pred CCCCCCCCCCCCCccCCccCCCCc
Q 013716 409 PMIYGRGPMPSGMHMVPMVLPDGQ 432 (437)
Q Consensus 409 ~~~~g~~~~p~~~~~~p~~~p~~~ 432 (437)
..+|+.++.|.+.+..|+..|+..
T Consensus 145 ~~~y~~~~~P~~p~~apy~~~p~p 168 (182)
T PF06495_consen 145 AYPYQMPPRPMPPYFAPYPRPPAP 168 (182)
T ss_pred ccccccCCCCCCcccCccCCCCCC
Confidence 344555555544454555555433
No 278
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.00 E-value=2.9 Score=39.13 Aligned_cols=77 Identities=6% Similarity=0.016 Sum_probs=61.2
Q ss_pred eEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCCC
Q 013716 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (437)
Q Consensus 284 ~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 361 (437)
+.|+..||...++.++.-+|..||.|..+.+-+.-+++ +-.+||+-. ..+|..+|..+.-..+.|..++|.++....
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~-~~~~~~~i~~~k~q~~~~~~~r~~~~~~s~ 83 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAK-KANGPNYIQPQKRQTTFESQDRKAVSPSSS 83 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeee-ccCcccccCHHHHhhhhhhhhhhhcCchhh
Confidence 46778899999999999999999999999887766665 556888764 556777887777778888889988876543
No 279
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=46.98 E-value=93 Score=21.38 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=20.2
Q ss_pred cEEEEEecCHHHHHHHHHHhCCCcc
Q 013716 149 GFAFVSFRSKEFAKKAIDELHSKEL 173 (437)
Q Consensus 149 g~afV~f~~~~~A~~a~~~l~~~~~ 173 (437)
.+.+|.|.|...|.+|-+.|...-+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCC
Confidence 3689999999999999987765443
No 280
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=46.91 E-value=14 Score=29.71 Aligned_cols=95 Identities=13% Similarity=0.135 Sum_probs=63.4
Q ss_pred CCCHHHHHHhhcc-cCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeeccccc--------
Q 013716 117 DASEEDLRDLCEP-IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETKN-------- 187 (437)
Q Consensus 117 ~~t~~~l~~~f~~-~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~~-------- 187 (437)
..+-..|...+.. ++....+.+..- ..++..+.|.+.+++.+++. .....+.+..+.+....+..
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~~~~~ 101 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSEVKFE 101 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccccccccee
Confidence 4566666665533 333223333221 24689999999999999994 35556777777776655321
Q ss_pred ----cccccCCCCC-CCHHHHHHHHHhhCCceeEEE
Q 013716 188 ----RLFIGNVPKN-WTEDEFRKVIEDVGPGVETIE 218 (437)
Q Consensus 188 ----~l~v~nl~~~-~~~~~l~~~f~~~g~~i~~~~ 218 (437)
=+.|.+||.. ++++-++.+.+.+|. +..+.
T Consensus 102 ~~~vWVri~glP~~~~~~~~~~~i~~~iG~-~i~vD 136 (153)
T PF14111_consen 102 HIPVWVRIYGLPLHLWSEEILKAIGSKIGE-PIEVD 136 (153)
T ss_pred ccchhhhhccCCHHHhhhHHHHHHHHhcCC-eEEEE
Confidence 1456899987 788889999999997 55543
No 281
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=45.85 E-value=17 Score=32.08 Aligned_cols=7 Identities=14% Similarity=0.330 Sum_probs=2.8
Q ss_pred CCCHHHH
Q 013716 293 NTSTEKI 299 (437)
Q Consensus 293 ~~t~~~L 299 (437)
.+|.++|
T Consensus 184 ~lTQeEl 190 (240)
T PF05764_consen 184 PLTQEEL 190 (240)
T ss_pred CCCHHHH
Confidence 3444433
No 282
>COG4907 Predicted membrane protein [Function unknown]
Probab=45.21 E-value=51 Score=31.62 Aligned_cols=13 Identities=15% Similarity=0.284 Sum_probs=7.8
Q ss_pred HHHHHHHHHhcCC
Q 013716 332 RSSALKAVKDTEK 344 (437)
Q Consensus 332 ~~~A~~A~~~l~g 344 (437)
.+...+|++.++.
T Consensus 525 ~dkVvkam~~~~~ 537 (595)
T COG4907 525 SDKVVKAMRKALD 537 (595)
T ss_pred HHHHHHHHHHhCc
Confidence 3556667766653
No 283
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=44.38 E-value=19 Score=34.89 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=12.9
Q ss_pred cCCCCCCCeEEEcCCCcCC
Q 013716 100 LALPPNGSEVFIGGLPKDA 118 (437)
Q Consensus 100 ~~~~~~~~~l~v~nLp~~~ 118 (437)
....+.+.+++-+.|.+.+
T Consensus 173 l~~Dp~GaR~~sGs~Dy~v 191 (641)
T KOG0772|consen 173 LAVDPSGARFVSGSLDYTV 191 (641)
T ss_pred eeecCCCceeeeccccceE
Confidence 3455667778888887664
No 284
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=43.13 E-value=12 Score=34.95 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=50.9
Q ss_pred CCCeEEEcCCCcCCCHH--------HHHHhhcc--cCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q 013716 105 NGSEVFIGGLPKDASEE--------DLRDLCEP--IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~--------~l~~~f~~--~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~ 165 (437)
..+.+|+.+.+...+.. ++...|.. .+.+..++..++.....++|..|++|.....|++++
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~n 243 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFN 243 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHh
Confidence 45678888888765554 89999988 678888988888766789999999999999999888
No 285
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=42.36 E-value=30 Score=32.26 Aligned_cols=67 Identities=21% Similarity=0.239 Sum_probs=44.6
Q ss_pred CCeEEEcCCCcCCCHHHHHHhhcccC-CeEEEEEeecCCC--CCcccEEEEEecCHHHHHHHHHHhCCCc
Q 013716 106 GSEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLMKDKES--GESKGFAFVSFRSKEFAKKAIDELHSKE 172 (437)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G-~i~~v~~~~~~~~--~~~~g~afV~f~~~~~A~~a~~~l~~~~ 172 (437)
.+.|.|++||+..|+.+|.+-+..|- .+....+.....+ ..-.+.|||.|..+++........+|..
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~i 76 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYI 76 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceE
Confidence 35699999999999999988777654 2222223211110 1125569999999999777776666644
No 286
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=42.15 E-value=26 Score=34.01 Aligned_cols=16 Identities=38% Similarity=0.329 Sum_probs=8.3
Q ss_pred EEEecCHHHHHHHHHH
Q 013716 152 FVSFRSKEFAKKAIDE 167 (437)
Q Consensus 152 fV~f~~~~~A~~a~~~ 167 (437)
.=.|...+.|-|..+.
T Consensus 213 HDrF~e~eQaPKSr~e 228 (694)
T KOG4264|consen 213 HDRFDEKEQAPKSRKE 228 (694)
T ss_pred cccchhhhcCchHHHH
Confidence 3456666655554433
No 287
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=42.12 E-value=4.7 Score=39.09 Aligned_cols=66 Identities=15% Similarity=0.160 Sum_probs=45.9
Q ss_pred cceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCcee
Q 013716 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEI 347 (437)
Q Consensus 282 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i 347 (437)
.+.||++|++++++-.+|..+|+.+--+.++.+......+ ..+++|+|.---....|+-+||++.+
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl 298 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRL 298 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccc
Confidence 3679999999999999999999987666666554433222 44688999854444445555555444
No 288
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=41.92 E-value=55 Score=32.59 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=7.7
Q ss_pred CeEEEcCCCcCC
Q 013716 107 SEVFIGGLPKDA 118 (437)
Q Consensus 107 ~~l~v~nLp~~~ 118 (437)
.+=-|+|||..+
T Consensus 119 ~rntvgnipl~w 130 (733)
T KOG0650|consen 119 TRNTVGNIPLKW 130 (733)
T ss_pred hhcccCCccccc
Confidence 345678888654
No 289
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=41.28 E-value=37 Score=28.01 Aligned_cols=62 Identities=11% Similarity=0.078 Sum_probs=39.3
Q ss_pred CCHHHHHHHHhcc-CCeeEEEeCCCCCC--C-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEe
Q 013716 294 TSTEKIKELFQRH-GEVTKVVMPPGKSG--K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (437)
Q Consensus 294 ~t~~~L~~~f~~~-G~v~~v~i~~~~~~--~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 356 (437)
.|++.|..+..-- |.+..|.+.+...+ . +|-.||+|.+.+.|.+.+.. +.....-..|...+
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~-~e~~~~e~el~r~~ 183 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT-HEEKGAETELKRSG 183 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh-hhhhccchHHHHHH
Confidence 4454444443321 68888888766554 3 88999999999999987764 43333334443333
No 290
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.21 E-value=4.9 Score=37.76 Aligned_cols=77 Identities=6% Similarity=-0.128 Sum_probs=58.6
Q ss_pred CeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
.+-|+..||...++.++.-+|..||.|..+.+.+..+.+...-.+||.... ..|..||..+.-..+.|..++|..+.
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 346788999999999999999999999999888777767777788887664 34666666555555666666665544
No 291
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=39.25 E-value=1.1e+02 Score=24.47 Aligned_cols=56 Identities=18% Similarity=0.203 Sum_probs=38.3
Q ss_pred eEEEecCCCCCCHHHHHHHHhc-cC-CeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHH
Q 013716 284 ALYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340 (437)
Q Consensus 284 ~l~V~nLp~~~t~~~L~~~f~~-~G-~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~ 340 (437)
+-++--+....+..+|++.+.. |+ .|..|..+....+. --|||.+..-.+|.....
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~-KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGL-KKAYIRLSPDVDALDVAN 140 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCc-eEEEEEECCCCcHHHHHH
Confidence 3445556778999999999987 66 46677665544432 249999987776655443
No 292
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=39.11 E-value=1e+02 Score=19.53 Aligned_cols=42 Identities=10% Similarity=0.308 Sum_probs=29.3
Q ss_pred HHHHHHHhccC-CeeEEEeCCCCCCCccEEEEEeCCHHHHHHHH
Q 013716 297 EKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAV 339 (437)
Q Consensus 297 ~~L~~~f~~~G-~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~ 339 (437)
..+...|...| .|..+.+.... +.++...+.+++.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETR-GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEECCHHHHHHHh
Confidence 45667777766 67777766554 33567788888888887765
No 293
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=36.98 E-value=43 Score=23.10 Aligned_cols=28 Identities=25% Similarity=0.281 Sum_probs=22.8
Q ss_pred cEEEEEeCCHHHHHHHHHhcCCceeCCe
Q 013716 323 DFGFIHYAERSSALKAVKDTEKYEIDGQ 350 (437)
Q Consensus 323 g~afV~f~~~~~A~~A~~~l~g~~i~g~ 350 (437)
.+.+|.|.+..+|.+|-+.|....|..+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 3689999999999999998887655443
No 294
>KOG2266 consensus Chromatin-associated protein Dek and related proteins, contains SAP DNA binding domain [Chromatin structure and dynamics]
Probab=36.71 E-value=35 Score=32.77 Aligned_cols=10 Identities=30% Similarity=0.733 Sum_probs=7.7
Q ss_pred CCcccEEEEE
Q 013716 145 GESKGFAFVS 154 (437)
Q Consensus 145 ~~~~g~afV~ 154 (437)
++..||.|-.
T Consensus 243 ~~FSGF~w~~ 252 (594)
T KOG2266|consen 243 GQFSGFVWSK 252 (594)
T ss_pred hcccCccccc
Confidence 7788888776
No 295
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=36.64 E-value=1.5e+02 Score=20.78 Aligned_cols=61 Identities=7% Similarity=0.121 Sum_probs=40.9
Q ss_pred EEEecCCCCCCHHHHHHHHhc-------cCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCce
Q 013716 285 LYVKNIPDNTSTEKIKELFQR-------HGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346 (437)
Q Consensus 285 l~V~nLp~~~t~~~L~~~f~~-------~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 346 (437)
|..++||..+|.++|.....+ +..|..++-.-.....+-||+..=.|.+...++-+.- |..
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~a-G~p 70 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARRA-GLP 70 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHHc-CCC
Confidence 567889988999998777543 3355555444443334578887777888887777653 543
No 296
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=34.26 E-value=37 Score=33.00 Aligned_cols=8 Identities=13% Similarity=-0.006 Sum_probs=4.7
Q ss_pred EEEEEeCC
Q 013716 324 FGFIHYAE 331 (437)
Q Consensus 324 ~afV~f~~ 331 (437)
-|.+.+.+
T Consensus 443 ~ap~~~s~ 450 (694)
T KOG4264|consen 443 RAPSHQSD 450 (694)
T ss_pred cccccccc
Confidence 46666654
No 297
>COG4907 Predicted membrane protein [Function unknown]
Probab=34.07 E-value=38 Score=32.43 Aligned_cols=9 Identities=33% Similarity=0.242 Sum_probs=3.9
Q ss_pred HHHHHHhcC
Q 013716 335 ALKAVKDTE 343 (437)
Q Consensus 335 A~~A~~~l~ 343 (437)
+.+++++|.
T Consensus 525 ~dkVvkam~ 533 (595)
T COG4907 525 SDKVVKAMR 533 (595)
T ss_pred HHHHHHHHH
Confidence 444444443
No 298
>PRK11901 hypothetical protein; Reviewed
Probab=33.74 E-value=1.3e+02 Score=27.73 Aligned_cols=68 Identities=16% Similarity=0.266 Sum_probs=44.7
Q ss_pred hcCCCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEE--EEecCHHHHHHHHHHhCCC
Q 013716 99 LLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAF--VSFRSKEFAKKAIDELHSK 171 (437)
Q Consensus 99 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~af--V~f~~~~~A~~a~~~l~~~ 171 (437)
+...+....||-|-.+ ..++.|..|..+++ +..+++++....|+.- |.. =.|.+.++|+.|+..|...
T Consensus 238 L~s~p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 238 LSSAPASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred hhcCCCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCHH
Confidence 4455556667777665 34778888888776 3456666544434332 333 3699999999999887643
No 299
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.73 E-value=80 Score=32.75 Aligned_cols=6 Identities=17% Similarity=0.235 Sum_probs=2.5
Q ss_pred EEEecC
Q 013716 152 FVSFRS 157 (437)
Q Consensus 152 fV~f~~ 157 (437)
+|.+.+
T Consensus 773 ~i~~~~ 778 (968)
T KOG1060|consen 773 HIEEKS 778 (968)
T ss_pred cCcchh
Confidence 444443
No 300
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=32.95 E-value=39 Score=29.22 Aligned_cols=35 Identities=20% Similarity=0.468 Sum_probs=29.2
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEe
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVM 314 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i 314 (437)
....+||+-|+|..+|++-|..+.+.+|.+..+..
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 34479999999999999999999999986655443
No 301
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=31.45 E-value=78 Score=32.49 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=12.5
Q ss_pred CCcC----CCHHHHHHhhcccC
Q 013716 114 LPKD----ASEEDLRDLCEPIG 131 (437)
Q Consensus 114 Lp~~----~t~~~l~~~f~~~G 131 (437)
||+. .|-++|..++..+-
T Consensus 388 lpfti~~Pk~yeef~~Ll~k~s 409 (823)
T KOG2147|consen 388 LPFTIECPKNYEEFLALLEKLS 409 (823)
T ss_pred CCeeecCCcCHHHHHHHHHccC
Confidence 6665 36778888887664
No 302
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=31.11 E-value=2.1e+02 Score=20.78 Aligned_cols=46 Identities=13% Similarity=0.176 Sum_probs=34.8
Q ss_pred HHHHHHHHhccC-CeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcC
Q 013716 296 TEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343 (437)
Q Consensus 296 ~~~L~~~f~~~G-~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 343 (437)
.+.+++++..+| ++.++.+...... .+..+++.+.+.|.++...+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD--~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYD--FVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCC--EEEEEEcCCHHHHHHHHHHHH
Confidence 345777888866 6888888876644 578889999998888776655
No 303
>PF15063 TC1: Thyroid cancer protein 1
Probab=30.66 E-value=23 Score=24.45 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=33.8
Q ss_pred eEEEecCCCCCCHHHHHHHHhccCCee---EEEeCCCCCCCccEEEEEeCCHHHHHHHHHhc
Q 013716 284 ALYVKNIPDNTSTEKIKELFQRHGEVT---KVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342 (437)
Q Consensus 284 ~l~V~nLp~~~t~~~L~~~f~~~G~v~---~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l 342 (437)
+--+.||-.+++...|..+|..-|... +++|+..- -.++++..+|+..|
T Consensus 27 KkasaNIFe~vn~~qlqrLF~~sGD~kAEeRA~iI~~~----------~~d~ee~a~AL~~L 78 (79)
T PF15063_consen 27 KKASANIFENVNLDQLQRLFQKSGDKKAEERARIIWEC----------AQDPEEKARALMAL 78 (79)
T ss_pred hhhhhhhhhccCHHHHHHHHHHccchhHHHHHHHHHhh----------CCCHHHHHHHHHhc
Confidence 444678999999999999999998653 34443222 23677666777655
No 304
>PHA03169 hypothetical protein; Provisional
Probab=30.65 E-value=2e+02 Score=26.90 Aligned_cols=9 Identities=22% Similarity=0.209 Sum_probs=4.7
Q ss_pred HHHHHHhhC
Q 013716 203 FRKVIEDVG 211 (437)
Q Consensus 203 l~~~f~~~g 211 (437)
...||.++-
T Consensus 303 r~~Ffr~~l 311 (413)
T PHA03169 303 RRRFFRQVL 311 (413)
T ss_pred HHHHHHHhc
Confidence 345666553
No 305
>KOG1980 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.54 E-value=21 Score=35.63 Aligned_cols=44 Identities=18% Similarity=0.254 Sum_probs=21.1
Q ss_pred HHHHhhcccCCeEEEEEee-cCCCCCcccEE-EEEecCHHHHHHHH
Q 013716 122 DLRDLCEPIGDVFEVRLMK-DKESGESKGFA-FVSFRSKEFAKKAI 165 (437)
Q Consensus 122 ~l~~~f~~~G~i~~v~~~~-~~~~~~~~g~a-fV~f~~~~~A~~a~ 165 (437)
-.+.-|++|-.+.+.+-.. +...+.+.-|+ .+.|.+-.-+++-+
T Consensus 466 ~ArerfqkYRGLksl~Ts~Wd~~En~P~dy~rlfqF~Nyrntkk~i 511 (754)
T KOG1980|consen 466 SARERFQKYRGLKSLRTSPWDAKENLPADYARLFQFQNYRNTKKRI 511 (754)
T ss_pred HHHHHHHHhccccccccCCCcccccCcHHHHHHHhhhhhhhHHHHh
Confidence 3556677776666555322 11112222232 34555555555554
No 306
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=29.99 E-value=1.9e+02 Score=19.88 Aligned_cols=50 Identities=14% Similarity=0.284 Sum_probs=32.3
Q ss_pred CHHHHHHHHhccC-CeeEEEeCCCCCCC-ccEEEEEeC-CHHHHHHHHHhcCC
Q 013716 295 STEKIKELFQRHG-EVTKVVMPPGKSGK-RDFGFIHYA-ERSSALKAVKDTEK 344 (437)
Q Consensus 295 t~~~L~~~f~~~G-~v~~v~i~~~~~~~-~g~afV~f~-~~~~A~~A~~~l~g 344 (437)
.-.++...|+.+| .+.+|.-.+.+... .-+-||.|. ......+|+..|+.
T Consensus 13 ~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 13 ALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 3456778888887 57777766655444 345678887 44455677776653
No 307
>CHL00128 psbW photosystem II protein W; Reviewed
Probab=29.90 E-value=78 Score=23.98 Aligned_cols=29 Identities=7% Similarity=0.137 Sum_probs=24.3
Q ss_pred CeeEEEeCCCCCCCccEEEEEeCCHHHHH
Q 013716 308 EVTKVVMPPGKSGKRDFGFIHYAERSSAL 336 (437)
Q Consensus 308 ~v~~v~i~~~~~~~~g~afV~f~~~~~A~ 336 (437)
.|..|+|.+.+.+.+|.|...|.++..-.
T Consensus 14 ~ip~VrLtRsrdg~~g~a~f~F~~p~al~ 42 (113)
T CHL00128 14 VIPDVRLTRSRDGSTGTATFRFKNPNILD 42 (113)
T ss_pred cCCceEEEEccCCCceEEEEEECCchhhh
Confidence 36789999999988999999998887633
No 308
>PHA03169 hypothetical protein; Provisional
Probab=29.87 E-value=1.9e+02 Score=27.00 Aligned_cols=7 Identities=29% Similarity=0.321 Sum_probs=2.6
Q ss_pred CHHHHHH
Q 013716 331 ERSSALK 337 (437)
Q Consensus 331 ~~~~A~~ 337 (437)
+..-|++
T Consensus 375 sk~TaK~ 381 (413)
T PHA03169 375 SRGTAKA 381 (413)
T ss_pred CcccHHH
Confidence 3333333
No 309
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=29.44 E-value=1.5e+02 Score=28.07 Aligned_cols=39 Identities=13% Similarity=0.250 Sum_probs=30.5
Q ss_pred CCCCeEEEcCCCcC-CCHHHHHHhhccc----CCeEEEEEeecC
Q 013716 104 PNGSEVFIGGLPKD-ASEEDLRDLCEPI----GDVFEVRLMKDK 142 (437)
Q Consensus 104 ~~~~~l~v~nLp~~-~t~~~l~~~f~~~----G~i~~v~~~~~~ 142 (437)
....+|-|-||.|+ +...+|...|+.| |+|..|.|++..
T Consensus 144 ~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypse 187 (622)
T COG5638 144 NPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSE 187 (622)
T ss_pred CcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhh
Confidence 35567999999986 7788899888775 578888887653
No 310
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=28.44 E-value=1.8e+02 Score=19.21 Aligned_cols=49 Identities=10% Similarity=0.209 Sum_probs=32.3
Q ss_pred CHHHHHHHHhccC-CeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCce
Q 013716 295 STEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346 (437)
Q Consensus 295 t~~~L~~~f~~~G-~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 346 (437)
.-.+|-.+|.+.| .|..+.+..... +++.-+.+.+.+.|.+++.. +|..
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~--~~~~rl~~~~~~~~~~~L~~-~G~~ 63 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE--FGILRLIVSDPDKAKEALKE-AGFA 63 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC--CCEEEEEECCHHHHHHHHHH-CCCE
Confidence 4466778888876 688887655433 35666667777777777765 4443
No 311
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=28.43 E-value=1.7e+02 Score=18.93 Aligned_cols=54 Identities=11% Similarity=0.182 Sum_probs=39.3
Q ss_pred eEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCH----HHHHHHHHh
Q 013716 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAER----SSALKAVKD 341 (437)
Q Consensus 284 ~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~----~~A~~A~~~ 341 (437)
+|.|.||.-.--...|.+.+...-.|..+.+.... +.+-|.|... ++..++|..
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~----~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET----KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT----TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC----CEEEEEEecCCCCHHHHHHHHHH
Confidence 46777777666677889999988788888886665 5688888744 455555554
No 312
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=27.06 E-value=1.5e+02 Score=27.48 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=38.2
Q ss_pred EEEEecChHHHHHHHHHHhccCcccCCCCCeeeecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhc
Q 013716 233 SFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQR 305 (437)
Q Consensus 233 ~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~ 305 (437)
|||+|.+..+|..|.+.+.... .....+..|... +-|.-.||........+|.++..
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~----~~~~~v~~APeP------------~DI~W~NL~~~~~~r~~R~~~~~ 57 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR----PNSWRVSPAPEP------------DDIIWENLSISSKQRFLRRIIVN 57 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC----CCCceEeeCCCc------------ccccccccCCChHHHHHHHHHHH
Confidence 6999999999999998654432 233344444333 45777888777777767666553
No 313
>PRK13610 photosystem II reaction center protein Psb28; Provisional
Probab=27.01 E-value=92 Score=23.49 Aligned_cols=40 Identities=10% Similarity=0.173 Sum_probs=31.0
Q ss_pred eEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHH
Q 013716 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALK 337 (437)
Q Consensus 284 ~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~ 337 (437)
.=|+.+|... .|-.|++.+.+.+..|.|...|.++..-..
T Consensus 10 IQF~~Gi~E~--------------~vp~VrLtRsrdG~tG~A~f~F~~p~~l~~ 49 (113)
T PRK13610 10 IQFVKGENEK--------------DQPEIRLFRNLDGKKGKAVYKFYKPKTITL 49 (113)
T ss_pred EEEecCCCCC--------------cCCceEEEEccCCCccEEEEEECCchhccc
Confidence 4567777654 467899999999999999999998876433
No 314
>PLN00039 photosystem II reaction center Psb28 protein; Provisional
Probab=26.91 E-value=88 Score=23.61 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=24.2
Q ss_pred CeeEEEeCCCCCCCccEEEEEeCCHHHHH
Q 013716 308 EVTKVVMPPGKSGKRDFGFIHYAERSSAL 336 (437)
Q Consensus 308 ~v~~v~i~~~~~~~~g~afV~f~~~~~A~ 336 (437)
.|..|+|.+.+.+.+|.|...|.++..-.
T Consensus 13 ~vp~VrLtRsrdg~~g~a~f~F~~p~~l~ 41 (111)
T PLN00039 13 TVPDVRLTRSRDGTNGTAIFVFDQPSVFD 41 (111)
T ss_pred cCCceEEEEccCCCccEEEEEECCchhhc
Confidence 36789999999998999999998887543
No 315
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.43 E-value=1.1e+02 Score=30.41 Aligned_cols=60 Identities=28% Similarity=0.409 Sum_probs=45.6
Q ss_pred EEEcCCCcCC---CHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 013716 109 VFIGGLPKDA---SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (437)
Q Consensus 109 l~v~nLp~~~---t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 178 (437)
=+||||+.-. .-..+.++-++||+|..+++ |.. -.|...+.+.|+.|+.. ++..+.+|+.
T Consensus 35 PiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~l------G~~---~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 35 PIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRL------GSV---PVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred CccccHHHcCCCchhHHHHHHHHHhCCeEEEEe------cCc---eEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 3788887543 34566777789999999988 322 37888999999999954 8888888875
No 316
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.98 E-value=1.4e+02 Score=27.83 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=12.0
Q ss_pred ceeCCeEEEEEeccCCCCCC
Q 013716 345 YEIDGQVLEVVLAKPQTDKK 364 (437)
Q Consensus 345 ~~i~g~~l~v~~a~~~~~~~ 364 (437)
..|..+.=++.+++....+.
T Consensus 245 ~~~~~r~er~r~~r~~~e~~ 264 (377)
T KOG1308|consen 245 REIKERVERVRYAREPEEMA 264 (377)
T ss_pred hcccccccccccccchhhhc
Confidence 35566666777776555543
No 317
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=25.61 E-value=6.4e+02 Score=24.68 Aligned_cols=14 Identities=7% Similarity=-0.012 Sum_probs=6.0
Q ss_pred cChHHHHHHHHHHh
Q 013716 238 YNNACADYSRQKML 251 (437)
Q Consensus 238 ~~~~~a~~a~~~~~ 251 (437)
.+...+......|.
T Consensus 253 ~t~~~~~~l~~~L~ 266 (456)
T PRK10590 253 RTKHGANHLAEQLN 266 (456)
T ss_pred CcHHHHHHHHHHHH
Confidence 33444444444443
No 318
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=25.32 E-value=65 Score=31.08 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=10.3
Q ss_pred EcCCCcCCCHHHHHHhhcc
Q 013716 111 IGGLPKDASEEDLRDLCEP 129 (437)
Q Consensus 111 v~nLp~~~t~~~l~~~f~~ 129 (437)
-+| |. +....|.++|+.
T Consensus 280 aKn-PK-AekqalnqhFQ~ 296 (615)
T KOG3540|consen 280 AKN-PK-AEKQALNQHFQK 296 (615)
T ss_pred ccC-ch-hhHHHHHHHHHH
Confidence 345 44 666677777754
No 319
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.06 E-value=2e+02 Score=18.56 Aligned_cols=48 Identities=10% Similarity=0.235 Sum_probs=28.3
Q ss_pred HHHHHHHhccC-CeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCc
Q 013716 297 EKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY 345 (437)
Q Consensus 297 ~~L~~~f~~~G-~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 345 (437)
.+|-.+|..+| .|..+..............+..++.+.+.++++. +|.
T Consensus 14 ~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~~-~G~ 62 (65)
T cd04882 14 HEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQE-RGV 62 (65)
T ss_pred HHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHHH-CCc
Confidence 45667777776 5766665444322234456666677777777764 443
No 320
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=24.86 E-value=2e+02 Score=30.02 Aligned_cols=10 Identities=30% Similarity=0.564 Sum_probs=4.1
Q ss_pred EEEecCHHHH
Q 013716 152 FVSFRSKEFA 161 (437)
Q Consensus 152 fV~f~~~~~A 161 (437)
-+.|.+....
T Consensus 296 ~~r~~~~~~~ 305 (756)
T KOG2375|consen 296 GVRFENEDFN 305 (756)
T ss_pred chhhhhhhhh
Confidence 3444444333
No 321
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=24.45 E-value=1.5e+02 Score=21.27 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=21.0
Q ss_pred CeEEEEEeecCCCCCcccEEEEEecC
Q 013716 132 DVFEVRLMKDKESGESKGFAFVSFRS 157 (437)
Q Consensus 132 ~i~~v~~~~~~~~~~~~g~afV~f~~ 157 (437)
.|.+|+|.+-...++-+++|=|.|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47788888876668999999999975
No 322
>PRK13612 photosystem II reaction center protein Psb28; Provisional
Probab=24.36 E-value=88 Score=23.69 Aligned_cols=29 Identities=7% Similarity=0.201 Sum_probs=24.1
Q ss_pred CeeEEEeCCCCCCCccEEEEEeCCHHHHH
Q 013716 308 EVTKVVMPPGKSGKRDFGFIHYAERSSAL 336 (437)
Q Consensus 308 ~v~~v~i~~~~~~~~g~afV~f~~~~~A~ 336 (437)
.|..|+|.+.+.+.+|.|...|.++..-.
T Consensus 16 ~ip~VrLtRsrdg~~g~a~f~F~~p~al~ 44 (113)
T PRK13612 16 VVPDIRLTRSRDGRTGQATFYFEQPQALA 44 (113)
T ss_pred cCCceEEEEccCCCeeEEEEEECCccccC
Confidence 36789999999988999999999877643
No 323
>COG5213 FIP1 Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]
Probab=24.05 E-value=3e+02 Score=23.73 Aligned_cols=6 Identities=33% Similarity=1.187 Sum_probs=3.1
Q ss_pred EEEEEe
Q 013716 324 FGFIHY 329 (437)
Q Consensus 324 ~afV~f 329 (437)
|||=+|
T Consensus 144 YGFnEf 149 (266)
T COG5213 144 YGFNEF 149 (266)
T ss_pred ccchhh
Confidence 455555
No 324
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=24.03 E-value=84 Score=30.94 Aligned_cols=43 Identities=19% Similarity=0.307 Sum_probs=37.0
Q ss_pred ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCCCCCC
Q 013716 322 RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDKK 364 (437)
Q Consensus 322 ~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~~~ 364 (437)
..++++.|.+...+.+|+..++|..+.+..+++..+.......
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~~~~ 105 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEVGSL 105 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccccccc
Confidence 5799999999999999999999999999888888877655443
No 325
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=23.70 E-value=37 Score=33.24 Aligned_cols=15 Identities=20% Similarity=0.270 Sum_probs=9.4
Q ss_pred EEEEecCHHHHHHHH
Q 013716 151 AFVSFRSKEFAKKAI 165 (437)
Q Consensus 151 afV~f~~~~~A~~a~ 165 (437)
..|-..+.+-|.++.
T Consensus 255 VLVL~PTRELaiQv~ 269 (691)
T KOG0338|consen 255 VLVLVPTRELAIQVH 269 (691)
T ss_pred EEEEeccHHHHHHHH
Confidence 556666666666555
No 326
>PF11702 DUF3295: Protein of unknown function (DUF3295); InterPro: IPR021711 This family is conserved in fungi but the function is not known.
Probab=23.13 E-value=54 Score=32.07 Aligned_cols=9 Identities=22% Similarity=0.907 Sum_probs=4.3
Q ss_pred CCCCCcccc
Q 013716 44 EENDDDEEY 52 (437)
Q Consensus 44 ~~~dd~~~~ 52 (437)
+||||++||
T Consensus 307 dDDDDssDW 315 (507)
T PF11702_consen 307 DDDDDSSDW 315 (507)
T ss_pred cCCccchhh
Confidence 344445555
No 327
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=22.81 E-value=38 Score=31.81 Aligned_cols=58 Identities=14% Similarity=0.185 Sum_probs=44.0
Q ss_pred ceEEEecCCCCCCH--------HHHHHHHhc--cCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHH
Q 013716 283 KALYVKNIPDNTST--------EKIKELFQR--HGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVK 340 (437)
Q Consensus 283 ~~l~V~nLp~~~t~--------~~L~~~f~~--~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~ 340 (437)
+.+|+.+.+...+. +++...|.. ++.+..|...++...+ +|..|++|.....|.+...
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 45666666654443 489999999 5677788887776333 8889999999999999874
No 328
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=22.72 E-value=2.1e+02 Score=21.32 Aligned_cols=46 Identities=30% Similarity=0.413 Sum_probs=25.7
Q ss_pred CCCHHHHHHhh-cccCCeEEEEEeec----CCCCCcccEEEEEecCHHHHHH
Q 013716 117 DASEEDLRDLC-EPIGDVFEVRLMKD----KESGESKGFAFVSFRSKEFAKK 163 (437)
Q Consensus 117 ~~t~~~l~~~f-~~~G~i~~v~~~~~----~~~~~~~g~afV~f~~~~~A~~ 163 (437)
..+..+|+..+ ..|+.=.+..++.. .-.|++.|||.| |.+.+.|++
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 56677777655 55663323333332 223567777776 666666654
No 329
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.69 E-value=1.8e+02 Score=28.84 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=43.0
Q ss_pred EEecCCCCCC---HHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEE
Q 013716 286 YVKNIPDNTS---TEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVL 352 (437)
Q Consensus 286 ~V~nLp~~~t---~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l 352 (437)
+||||+.-.. -..|..+-.+||.|-.+++-.. =.|...+.+.|..|+.. |+..+.+|+.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~-------~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV-------PVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc-------eEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 5778763332 3445566668999999888332 26777899999999986 8888888876
No 330
>PRK11901 hypothetical protein; Reviewed
Probab=22.05 E-value=1.6e+02 Score=27.12 Aligned_cols=58 Identities=14% Similarity=0.265 Sum_probs=36.7
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCC-CCccEEEE--EeCCHHHHHHHHHhcCC
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GKRDFGFI--HYAERSSALKAVKDTEK 344 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~~g~afV--~f~~~~~A~~A~~~l~g 344 (437)
.+|-|-. ..+++.|..|..+++ +..+++..... ++.-|..| .|.+.++|.+|+..|-.
T Consensus 246 YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 246 YTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred eEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 3454444 356778888888775 44455544332 22334433 68899999999998853
No 331
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=20.64 E-value=2.9e+02 Score=19.58 Aligned_cols=36 Identities=8% Similarity=0.287 Sum_probs=24.6
Q ss_pred CeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCce
Q 013716 308 EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE 346 (437)
Q Consensus 308 ~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 346 (437)
.|.++..+.+ -+||-||+=.+..++..|+..+.+..
T Consensus 33 ~I~Si~~~~~---lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAPDS---LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE-TT---STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEeCC---CceEEEEEeCCHHHHHHHHhccccee
Confidence 4556666544 26999999999999999998776543
No 332
>KOG2147 consensus Nucleolar protein involved in 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=20.37 E-value=59 Score=33.28 Aligned_cols=31 Identities=16% Similarity=0.104 Sum_probs=16.4
Q ss_pred CHHHHHHHHHhcCCceeCCeEEEEEeccCCCC
Q 013716 331 ERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (437)
Q Consensus 331 ~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~ 362 (437)
-.+++..++..+-+ .-.-++|.++..+|..-
T Consensus 694 kl~~~l~~vek~~~-~~~~kPLal~~hKPv~i 724 (823)
T KOG2147|consen 694 KLEDTLALVEKLTG-FAERKPLALQKHKPVAI 724 (823)
T ss_pred HHHHHHHHHHHHhh-hhhcccchhhccCCccc
Confidence 34566666666555 12245666655555443
No 333
>KOG3168 consensus U1 snRNP component [Transcription]
Probab=20.32 E-value=3.4e+02 Score=22.21 Aligned_cols=7 Identities=29% Similarity=0.335 Sum_probs=3.0
Q ss_pred CCccCCC
Q 013716 424 VPMVLPD 430 (437)
Q Consensus 424 ~p~~~p~ 430 (437)
+||+.|+
T Consensus 166 ~p~~~pp 172 (177)
T KOG3168|consen 166 PPKFGPP 172 (177)
T ss_pred CCCCCCC
Confidence 3344443
Done!