Query 013716
Match_columns 437
No_of_seqs 379 out of 3230
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 15:47:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013716.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/013716hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ghp_A U4/U6 snRNA-associated 100.0 3.7E-46 1.3E-50 341.8 28.3 252 99-360 34-291 (292)
2 3smz_A Protein raver-1, ribonu 100.0 4.9E-46 1.7E-50 339.6 26.5 247 103-363 19-267 (284)
3 4f02_A Polyadenylate-binding p 100.0 4.9E-37 1.7E-41 267.0 15.6 170 105-362 14-183 (213)
4 1l3k_A Heterogeneous nuclear r 100.0 1.3E-33 4.3E-38 243.0 20.3 177 102-364 9-187 (196)
5 1b7f_A Protein (SXL-lethal pro 100.0 2.8E-33 9.6E-38 234.6 19.1 163 105-357 2-168 (168)
6 3md3_A Nuclear and cytoplasmic 100.0 4E-33 1.4E-37 233.2 19.8 164 107-359 1-166 (166)
7 1fxl_A Paraneoplastic encephal 100.0 8.1E-33 2.8E-37 231.6 20.8 162 106-357 2-167 (167)
8 2qfj_A FBP-interacting repress 100.0 1.6E-32 5.3E-37 240.0 22.3 179 105-362 27-207 (216)
9 2cjk_A Nuclear polyadenylated 100.0 2.9E-33 9.8E-38 234.3 15.4 163 105-360 2-166 (167)
10 3nmr_A Cugbp ELAV-like family 100.0 2E-32 6.8E-37 231.1 18.7 165 105-358 2-175 (175)
11 3tyt_A Heterogeneous nuclear r 100.0 8.9E-31 3.1E-35 224.7 22.7 195 105-357 3-204 (205)
12 3pgw_A U1-A; protein-RNA compl 100.0 2.1E-30 7.2E-35 235.8 24.6 248 103-358 6-281 (282)
13 1fje_B Nucleolin RBD12, protei 100.0 7.8E-32 2.7E-36 227.4 12.7 166 102-360 9-174 (175)
14 2yh0_A Splicing factor U2AF 65 100.0 1.2E-30 3.9E-35 224.9 20.0 181 105-362 3-196 (198)
15 2g4b_A Splicing factor U2AF 65 100.0 6E-31 2E-35 221.3 17.7 157 105-358 3-172 (172)
16 2adc_A Polypyrimidine tract-bi 100.0 3.4E-30 1.1E-34 226.5 20.5 195 103-360 31-228 (229)
17 1qm9_A Polypyrimidine tract-bi 100.0 4E-30 1.4E-34 221.4 16.9 192 106-360 3-197 (198)
18 3sde_A Paraspeckle component 1 100.0 1.4E-29 4.7E-34 227.1 17.6 158 104-363 20-182 (261)
19 3smz_A Protein raver-1, ribonu 100.0 3.1E-27 1.1E-31 215.1 18.7 164 104-272 93-266 (284)
20 2ghp_A U4/U6 snRNA-associated 99.9 6.2E-27 2.1E-31 214.0 14.6 161 105-270 116-291 (292)
21 2kn4_A Immunoglobulin G-bindin 99.9 2.3E-22 8E-27 165.8 17.9 144 217-363 3-153 (158)
22 4f25_A Polyadenylate-binding p 99.9 1.5E-22 5.1E-27 156.9 10.3 95 105-201 4-112 (115)
23 4fxv_A ELAV-like protein 1; RN 99.9 6.2E-22 2.1E-26 148.6 11.1 82 104-185 17-98 (99)
24 2i2y_A Fusion protein consists 99.8 1.2E-20 4E-25 154.0 13.2 129 227-361 10-149 (150)
25 4fxv_A ELAV-like protein 1; RN 99.8 6.8E-21 2.3E-25 142.9 10.5 80 280-359 17-98 (99)
26 3s8s_A Histone-lysine N-methyl 99.8 2.5E-20 8.4E-25 142.5 11.6 84 103-186 3-86 (110)
27 3q2s_C Cleavage and polyadenyl 99.8 9.3E-22 3.2E-26 171.2 3.5 80 282-361 68-151 (229)
28 2lxi_A RNA-binding protein 10; 99.8 5E-21 1.7E-25 141.4 6.0 83 106-188 1-85 (91)
29 2lkz_A RNA-binding protein 5; 99.8 1.5E-20 5.3E-25 139.1 7.4 80 106-185 9-94 (95)
30 2lxi_A RNA-binding protein 10; 99.8 4.6E-20 1.6E-24 136.2 8.9 80 283-362 2-85 (91)
31 2cqi_A Nucleolysin TIAR; RNA r 99.8 4.9E-19 1.7E-23 134.5 14.2 84 280-363 13-96 (103)
32 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.4E-19 4.9E-24 132.3 10.1 82 103-184 4-85 (85)
33 3pgw_S U1-70K; protein-RNA com 99.8 4.4E-20 1.5E-24 175.8 9.4 83 280-362 100-184 (437)
34 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.7E-19 5.7E-24 132.6 10.5 83 104-186 4-86 (87)
35 4f25_A Polyadenylate-binding p 99.8 8.7E-20 3E-24 141.3 9.3 80 283-362 6-85 (115)
36 3lqv_A PRE-mRNA branch site pr 99.8 7.7E-20 2.6E-24 142.0 9.1 105 103-212 5-109 (115)
37 3md1_A Nuclear and cytoplasmic 99.8 2.8E-19 9.4E-24 130.1 11.1 80 107-186 2-81 (83)
38 2dnz_A Probable RNA-binding pr 99.8 2.6E-19 9E-24 133.9 10.9 84 104-187 3-86 (95)
39 2cq3_A RNA-binding protein 9; 99.8 1.1E-18 3.7E-23 132.6 14.0 84 280-363 13-96 (103)
40 2x1f_A MRNA 3'-END-processing 99.8 1.6E-19 5.5E-24 135.2 9.2 86 105-190 1-86 (96)
41 2e5h_A Zinc finger CCHC-type a 99.8 3.4E-19 1.2E-23 133.0 10.9 82 103-184 13-94 (94)
42 1whw_A Hypothetical protein ri 99.8 3E-19 1E-23 134.6 10.7 86 103-188 5-90 (99)
43 2dgo_A Cytotoxic granule-assoc 99.8 1.3E-18 4.6E-23 134.9 14.6 84 280-363 13-98 (115)
44 2cq0_A Eukaryotic translation 99.8 3.4E-19 1.2E-23 135.3 11.0 84 104-187 13-96 (103)
45 1whw_A Hypothetical protein ri 99.8 1.1E-18 3.8E-23 131.5 13.5 84 280-363 6-91 (99)
46 2dgx_A KIAA0430 protein; RRM d 99.8 6.8E-19 2.3E-23 131.6 12.2 82 280-362 7-92 (96)
47 2jrs_A RNA-binding protein 39; 99.8 2.7E-19 9.1E-24 136.7 9.9 84 103-186 23-106 (108)
48 2cqc_A Arginine/serine-rich sp 99.8 3.6E-19 1.2E-23 133.2 10.4 83 103-185 12-94 (95)
49 2lea_A Serine/arginine-rich sp 99.8 1.7E-19 5.8E-24 143.6 8.8 124 231-363 5-130 (135)
50 1rk8_A CG8781-PA, CG8781-PA pr 99.8 3.3E-19 1.1E-23 147.6 10.9 85 102-186 68-152 (165)
51 2dgs_A DAZ-associated protein 99.8 5.3E-19 1.8E-23 133.2 11.0 85 102-187 6-90 (99)
52 2do4_A Squamous cell carcinoma 99.8 6.9E-19 2.4E-23 132.9 11.6 84 103-187 14-97 (100)
53 3p5t_L Cleavage and polyadenyl 99.8 7.6E-20 2.6E-24 135.1 6.2 80 107-186 2-83 (90)
54 2lkz_A RNA-binding protein 5; 99.8 2.1E-19 7.2E-24 133.0 8.1 78 282-359 9-94 (95)
55 2cqd_A RNA-binding region cont 99.8 3.2E-18 1.1E-22 133.0 15.2 82 280-362 15-98 (116)
56 3s8s_A Histone-lysine N-methyl 99.8 5.3E-19 1.8E-23 135.1 10.5 81 281-361 5-87 (110)
57 2dgo_A Cytotoxic granule-assoc 99.8 7.5E-19 2.6E-23 136.4 11.5 85 103-187 12-96 (115)
58 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.1E-18 3.9E-23 132.2 12.2 84 280-363 10-95 (102)
59 2la6_A RNA-binding protein FUS 99.8 5.8E-19 2E-23 132.9 10.5 84 101-184 8-99 (99)
60 1h2v_Z 20 kDa nuclear CAP bind 99.8 6.4E-19 2.2E-23 144.6 11.5 83 280-362 37-121 (156)
61 2fy1_A RNA-binding motif prote 99.8 1.6E-18 5.6E-23 134.1 13.1 83 280-362 5-88 (116)
62 2cpz_A CUG triplet repeat RNA- 99.8 5.4E-19 1.8E-23 137.1 10.4 84 104-187 23-106 (115)
63 2dnz_A Probable RNA-binding pr 99.8 1.1E-18 3.8E-23 130.4 11.8 82 281-362 4-87 (95)
64 1x5u_A Splicing factor 3B subu 99.8 1.6E-18 5.3E-23 132.2 12.8 84 280-363 13-98 (105)
65 1x5u_A Splicing factor 3B subu 99.8 4.9E-19 1.7E-23 135.0 9.9 87 102-188 11-97 (105)
66 3ns6_A Eukaryotic translation 99.8 9E-20 3.1E-24 137.4 5.7 82 105-186 5-93 (100)
67 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3.7E-19 1.3E-23 134.9 9.1 85 103-187 9-93 (102)
68 1x5t_A Splicing factor 3B subu 99.8 3.5E-19 1.2E-23 133.5 8.7 84 104-187 3-87 (96)
69 2dnm_A SRP46 splicing factor; 99.8 3.7E-19 1.3E-23 135.2 8.9 84 103-186 10-93 (103)
70 2do0_A HnRNP M, heterogeneous 99.8 3.2E-18 1.1E-22 132.6 14.4 83 280-362 13-96 (114)
71 1x5s_A Cold-inducible RNA-bind 99.8 4.1E-19 1.4E-23 134.7 9.1 86 102-187 8-93 (102)
72 1p27_B RNA-binding protein 8A; 99.8 6.1E-19 2.1E-23 134.8 10.1 83 104-186 21-103 (106)
73 3r27_A HnRNP L, heterogeneous 99.8 7.8E-19 2.7E-23 129.5 10.2 78 280-361 19-98 (100)
74 2kn4_A Immunoglobulin G-bindin 99.8 1.6E-18 5.6E-23 142.7 13.4 133 135-273 2-153 (158)
75 1sjq_A Polypyrimidine tract-bi 99.8 6E-19 2E-23 131.6 9.6 80 280-363 14-95 (105)
76 1x5s_A Cold-inducible RNA-bind 99.8 1.2E-18 4.2E-23 132.0 11.6 84 280-363 10-95 (102)
77 2cpf_A RNA binding motif prote 99.8 5E-19 1.7E-23 133.1 9.4 84 104-187 3-89 (98)
78 1x5t_A Splicing factor 3B subu 99.8 1.2E-18 4.2E-23 130.5 11.4 83 281-363 4-89 (96)
79 2do4_A Squamous cell carcinoma 99.8 1.6E-18 5.5E-23 130.8 12.1 83 280-362 15-98 (100)
80 3s7r_A Heterogeneous nuclear r 99.8 1.2E-18 4E-23 127.9 10.9 81 102-183 7-87 (87)
81 1x4h_A RNA-binding protein 28; 99.8 8.6E-19 2.9E-23 135.2 10.6 86 102-187 11-102 (111)
82 2dgs_A DAZ-associated protein 99.8 2.1E-18 7.2E-23 129.9 12.5 83 280-363 8-92 (99)
83 2d9p_A Polyadenylate-binding p 99.8 1.3E-18 4.5E-23 132.1 11.1 83 280-363 13-96 (103)
84 3q2s_C Cleavage and polyadenyl 99.8 2.8E-19 9.6E-24 155.6 8.3 82 105-186 67-150 (229)
85 2dgu_A Heterogeneous nuclear r 99.8 4.6E-18 1.6E-22 129.0 14.0 79 280-364 9-87 (103)
86 2kxn_B Transformer-2 protein h 99.8 6.3E-19 2.2E-23 139.0 9.5 87 101-187 41-127 (129)
87 3md1_A Nuclear and cytoplasmic 99.8 1.3E-18 4.3E-23 126.6 10.4 79 283-361 2-82 (83)
88 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.1E-18 3.7E-23 128.2 10.1 80 281-360 5-86 (87)
89 2cpz_A CUG triplet repeat RNA- 99.8 2.3E-18 8E-23 133.5 12.1 84 280-363 23-108 (115)
90 1x4a_A Splicing factor, argini 99.8 5E-18 1.7E-22 130.3 13.8 82 280-362 20-101 (109)
91 3ucg_A Polyadenylate-binding p 99.8 1.2E-18 4.1E-23 128.6 9.9 80 106-186 6-85 (89)
92 2cq0_A Eukaryotic translation 99.8 1.9E-18 6.5E-23 131.2 11.3 84 280-363 13-98 (103)
93 2dnm_A SRP46 splicing factor; 99.8 1.9E-18 6.6E-23 131.2 11.3 84 280-363 11-96 (103)
94 2x1f_A MRNA 3'-END-processing 99.8 2.3E-18 7.8E-23 128.9 11.5 81 282-362 2-84 (96)
95 2cph_A RNA binding motif prote 99.8 4.3E-18 1.5E-22 130.3 13.2 84 280-363 13-100 (107)
96 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.8E-18 6E-23 126.5 10.6 79 280-358 5-85 (85)
97 1x4h_A RNA-binding protein 28; 99.8 5E-18 1.7E-22 130.9 13.6 84 280-363 13-104 (111)
98 2cq1_A PTB-like protein L; RRM 99.8 4.3E-18 1.5E-22 127.4 12.7 81 280-364 13-95 (101)
99 2wbr_A GW182, gawky, LD47780P; 99.8 1.5E-18 5.3E-23 122.8 9.7 74 105-184 6-79 (89)
100 1s79_A Lupus LA protein; RRM, 99.8 5.4E-19 1.9E-23 133.2 7.9 80 104-185 9-88 (103)
101 2ywk_A Putative RNA-binding pr 99.8 1.4E-18 4.7E-23 129.9 10.0 82 103-185 13-94 (95)
102 2cph_A RNA binding motif prote 99.8 1.2E-18 4.2E-23 133.4 10.0 85 104-188 13-99 (107)
103 1oo0_B CG8781-PA, drosophila Y 99.8 1.1E-18 3.7E-23 134.3 9.7 84 103-186 23-106 (110)
104 2dnh_A Bruno-like 5, RNA bindi 99.8 2.6E-18 8.7E-23 131.0 11.6 84 280-363 13-100 (105)
105 2dnh_A Bruno-like 5, RNA bindi 99.8 2E-18 6.8E-23 131.6 11.0 83 104-187 13-98 (105)
106 2d9p_A Polyadenylate-binding p 99.8 1.8E-18 6E-23 131.4 10.6 82 104-187 13-94 (103)
107 1u6f_A Tcubp1, RNA-binding pro 99.8 4.7E-18 1.6E-22 136.7 13.7 84 280-363 40-125 (139)
108 2div_A TRNA selenocysteine ass 99.8 8.6E-19 2.9E-23 132.1 8.7 84 103-186 6-94 (99)
109 1x4d_A Matrin 3; structural ge 99.8 1.3E-18 4.4E-23 130.0 9.5 79 280-362 13-94 (102)
110 1wi8_A EIF-4B, eukaryotic tran 99.8 3.8E-18 1.3E-22 129.8 12.4 82 280-363 13-97 (104)
111 2e5h_A Zinc finger CCHC-type a 99.8 4.5E-18 1.5E-22 126.9 12.4 79 280-358 14-94 (94)
112 3r27_A HnRNP L, heterogeneous 99.8 2.1E-18 7.2E-23 127.2 10.4 78 103-186 18-97 (100)
113 2dng_A Eukaryotic translation 99.8 2.1E-18 7.2E-23 130.9 10.7 82 104-187 13-94 (103)
114 2wbr_A GW182, gawky, LD47780P; 99.8 2.1E-18 7.2E-23 122.1 9.9 73 282-358 7-79 (89)
115 3n9u_C Cleavage and polyadenyl 99.8 1.2E-18 4.3E-23 141.8 10.0 82 105-186 54-137 (156)
116 4a8x_A RNA-binding protein wit 99.8 1.2E-18 4E-23 128.4 8.9 82 105-186 3-85 (88)
117 1sjq_A Polypyrimidine tract-bi 99.8 1.1E-18 3.7E-23 130.2 8.7 79 102-186 12-92 (105)
118 2dgp_A Bruno-like 4, RNA bindi 99.8 9.7E-19 3.3E-23 133.6 8.6 85 103-187 10-97 (106)
119 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.4E-18 4.7E-23 143.9 10.2 129 235-363 11-155 (165)
120 2err_A Ataxin-2-binding protei 99.8 1.6E-18 5.5E-23 132.7 9.9 81 280-360 27-107 (109)
121 2cpe_A RNA-binding protein EWS 99.8 1.4E-18 4.8E-23 134.3 9.6 84 104-187 13-104 (113)
122 1x4e_A RNA binding motif, sing 99.8 4E-19 1.4E-23 129.8 6.2 81 104-184 3-83 (85)
123 2cpf_A RNA binding motif prote 99.8 2.2E-18 7.4E-23 129.6 10.4 83 281-363 4-91 (98)
124 2fy1_A RNA-binding motif prote 99.8 1.5E-18 5.1E-23 134.4 9.7 84 103-187 4-87 (116)
125 2khc_A Testis-specific RNP-typ 99.8 1.1E-18 3.7E-23 136.1 8.9 82 103-184 37-118 (118)
126 1oo0_B CG8781-PA, drosophila Y 99.8 3.7E-18 1.3E-22 131.3 11.7 83 280-362 24-108 (110)
127 1wex_A Hypothetical protein (r 99.8 3.6E-18 1.2E-22 128.6 11.3 80 280-363 13-94 (104)
128 2dhg_A TRNA selenocysteine ass 99.8 2.1E-18 7.3E-23 131.2 10.1 84 280-363 7-93 (104)
129 3ulh_A THO complex subunit 4; 99.8 3E-18 1E-22 131.1 10.9 82 102-184 25-106 (107)
130 3ex7_B RNA-binding protein 8A; 99.8 2.4E-18 8.2E-23 135.8 10.7 84 280-363 20-105 (126)
131 2cqc_A Arginine/serine-rich sp 99.8 4.1E-18 1.4E-22 127.4 11.3 80 280-359 13-94 (95)
132 2ywk_A Putative RNA-binding pr 99.8 2.3E-18 7.8E-23 128.7 9.8 80 280-359 14-94 (95)
133 2dgp_A Bruno-like 4, RNA bindi 99.8 5.4E-18 1.9E-22 129.4 12.0 84 280-363 11-99 (106)
134 2cqd_A RNA-binding region cont 99.8 2.3E-18 7.9E-23 133.8 10.1 82 104-186 15-96 (116)
135 1wi8_A EIF-4B, eukaryotic tran 99.8 2.3E-18 7.9E-23 130.9 9.8 82 104-187 13-95 (104)
136 2rs2_A Musashi-1, RNA-binding 99.8 2.2E-18 7.6E-23 131.9 9.7 85 101-186 20-104 (109)
137 2dng_A Eukaryotic translation 99.8 5.8E-18 2E-22 128.4 11.9 82 280-363 13-96 (103)
138 2ek1_A RNA-binding protein 12; 99.8 9E-19 3.1E-23 130.9 7.3 81 104-184 13-93 (95)
139 2dhg_A TRNA selenocysteine ass 99.8 1.8E-18 6E-23 131.7 9.0 84 103-187 6-91 (104)
140 2dh8_A DAZ-associated protein 99.8 1.4E-18 4.6E-23 132.5 8.2 84 103-187 13-96 (105)
141 2cqp_A RNA-binding protein 12; 99.8 1.3E-18 4.4E-23 130.9 8.0 83 104-186 13-95 (98)
142 2dgv_A HnRNP M, heterogeneous 99.8 2.3E-18 7.9E-23 127.9 9.1 83 280-362 6-88 (92)
143 1p27_B RNA-binding protein 8A; 99.8 3.4E-18 1.2E-22 130.5 10.2 82 280-361 21-104 (106)
144 2dgv_A HnRNP M, heterogeneous 99.8 3.4E-18 1.2E-22 126.9 9.9 83 103-187 5-87 (92)
145 4a8x_A RNA-binding protein wit 99.8 3.7E-18 1.3E-22 125.6 10.0 80 282-361 4-86 (88)
146 2hvz_A Splicing factor, argini 99.8 1.4E-18 4.6E-23 131.5 7.7 84 107-195 1-100 (101)
147 2cq3_A RNA-binding protein 9; 99.8 7.4E-18 2.5E-22 127.9 11.8 83 103-187 12-94 (103)
148 2mss_A Protein (musashi1); RNA 99.8 9.4E-19 3.2E-23 124.5 6.3 75 108-183 1-75 (75)
149 2cpi_A CCR4-NOT transcription 99.8 5.7E-18 1.9E-22 130.2 11.2 82 280-361 13-102 (111)
150 1h2v_Z 20 kDa nuclear CAP bind 99.8 5.5E-18 1.9E-22 139.0 11.7 85 102-186 35-119 (156)
151 1p1t_A Cleavage stimulation fa 99.8 1.7E-18 5.8E-23 131.8 8.0 83 105-187 7-89 (104)
152 1u6f_A Tcubp1, RNA-binding pro 99.8 3.6E-18 1.2E-22 137.3 10.4 85 103-187 39-123 (139)
153 2cpe_A RNA-binding protein EWS 99.8 9.1E-18 3.1E-22 129.8 12.2 84 280-363 13-106 (113)
154 2cqi_A Nucleolysin TIAR; RNA r 99.8 6.2E-18 2.1E-22 128.3 11.0 83 103-187 12-94 (103)
155 1wez_A HnRNP H', FTP-3, hetero 99.8 2E-18 6.9E-23 130.1 8.2 81 103-186 12-92 (102)
156 1x4c_A Splicing factor, argini 99.8 2.3E-17 8E-22 126.1 14.3 78 280-362 13-95 (108)
157 1s79_A Lupus LA protein; RRM, 99.8 2.5E-18 8.6E-23 129.5 8.7 78 281-359 10-88 (103)
158 2dgw_A Probable RNA-binding pr 99.8 5.8E-18 2E-22 125.3 10.6 81 103-186 7-87 (91)
159 3ex7_B RNA-binding protein 8A; 99.8 2.6E-18 9E-23 135.6 9.1 84 103-186 19-102 (126)
160 3ns6_A Eukaryotic translation 99.8 1.1E-18 3.6E-23 131.5 6.4 80 282-361 6-94 (100)
161 1x4d_A Matrin 3; structural ge 99.7 2.5E-18 8.6E-23 128.4 8.3 80 104-189 13-95 (102)
162 2dnq_A RNA-binding protein 4B; 99.7 8E-18 2.7E-22 124.2 11.0 77 280-362 6-82 (90)
163 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.4E-18 4.8E-23 130.9 7.0 82 103-186 16-98 (100)
164 2kt5_A RNA and export factor-b 99.7 2.3E-17 7.8E-22 129.7 14.2 84 279-362 32-116 (124)
165 1uaw_A Mouse-musashi-1; RNP-ty 99.7 9.3E-19 3.2E-23 125.3 5.7 76 107-183 1-76 (77)
166 2ad9_A Polypyrimidine tract-bi 99.7 4.1E-18 1.4E-22 130.5 9.4 81 280-364 29-111 (119)
167 2jrs_A RNA-binding protein 39; 99.7 5.1E-18 1.7E-22 129.5 9.9 82 280-361 24-107 (108)
168 2do0_A HnRNP M, heterogeneous 99.7 9.3E-18 3.2E-22 130.0 11.5 81 104-185 13-93 (114)
169 2dgx_A KIAA0430 protein; RRM d 99.7 5E-18 1.7E-22 126.8 9.5 81 104-187 7-91 (96)
170 2cpi_A CCR4-NOT transcription 99.7 4.7E-18 1.6E-22 130.6 9.6 86 104-189 13-104 (111)
171 2cqg_A TDP-43, TAR DNA-binding 99.7 1.2E-17 3.9E-22 126.8 11.5 82 104-187 13-94 (103)
172 2fc9_A NCL protein; structure 99.7 1.6E-17 5.6E-22 125.5 12.3 80 280-362 13-93 (101)
173 2hgl_A HNRPF protein, heteroge 99.7 2.2E-18 7.5E-23 136.2 7.6 83 102-186 40-125 (136)
174 2cq4_A RNA binding motif prote 99.7 2.6E-18 8.7E-23 133.1 7.8 80 106-186 25-104 (114)
175 2kt5_A RNA and export factor-b 99.7 9.5E-18 3.2E-22 131.9 11.1 84 103-187 32-115 (124)
176 1wg5_A Heterogeneous nuclear r 99.7 5.4E-18 1.8E-22 128.7 9.3 81 104-186 13-94 (104)
177 3p5t_L Cleavage and polyadenyl 99.7 9.9E-19 3.4E-23 129.1 5.1 80 283-362 2-85 (90)
178 2div_A TRNA selenocysteine ass 99.7 6.4E-18 2.2E-22 127.3 9.5 82 280-361 7-95 (99)
179 2cpy_A RNA-binding protein 12; 99.7 2.4E-18 8.1E-23 133.0 7.2 81 104-186 13-94 (114)
180 3ulh_A THO complex subunit 4; 99.7 9.3E-18 3.2E-22 128.4 10.4 79 280-358 27-106 (107)
181 2cpj_A Non-POU domain-containi 99.7 6.6E-18 2.3E-22 127.1 9.4 85 103-193 12-96 (99)
182 2dgt_A RNA-binding protein 30; 99.7 3.2E-17 1.1E-21 121.5 13.0 77 280-362 8-84 (92)
183 1x4a_A Splicing factor, argini 99.7 1.1E-17 3.9E-22 128.3 10.8 82 103-187 19-100 (109)
184 2db1_A Heterogeneous nuclear r 99.7 3.4E-18 1.2E-22 132.8 7.9 81 104-186 15-98 (118)
185 3ucg_A Polyadenylate-binding p 99.7 9.9E-18 3.4E-22 123.6 10.0 78 282-360 6-85 (89)
186 1wf1_A RNA-binding protein RAL 99.7 2E-17 6.7E-22 127.1 12.1 96 258-362 6-102 (110)
187 2kxn_B Transformer-2 protein h 99.7 5.7E-18 1.9E-22 133.5 9.2 82 280-361 44-127 (129)
188 2hvz_A Splicing factor, argini 99.7 7.3E-18 2.5E-22 127.4 9.5 77 283-362 1-77 (101)
189 2err_A Ataxin-2-binding protei 99.7 6.3E-18 2.1E-22 129.4 9.2 83 102-186 25-107 (109)
190 2cpy_A RNA-binding protein 12; 99.7 2.3E-18 7.7E-23 133.1 6.7 82 280-362 13-96 (114)
191 2dis_A Unnamed protein product 99.7 5.2E-18 1.8E-22 130.2 8.6 86 103-188 5-94 (109)
192 2cq1_A PTB-like protein L; RRM 99.7 1.6E-17 5.5E-22 124.2 11.0 77 104-186 13-91 (101)
193 1x4g_A Nucleolysin TIAR; struc 99.7 2E-17 6.8E-22 126.8 11.8 80 280-363 23-102 (109)
194 2la6_A RNA-binding protein FUS 99.7 9.7E-18 3.3E-22 126.2 9.8 79 280-358 11-99 (99)
195 2jvr_A Nucleolar protein 3; RN 99.7 1.3E-17 4.4E-22 126.8 10.5 77 282-360 28-105 (111)
196 2m2b_A RNA-binding protein 10; 99.7 2.3E-18 7.8E-23 136.7 6.6 83 105-188 22-110 (131)
197 2dh8_A DAZ-associated protein 99.7 1.1E-17 3.6E-22 127.5 10.0 83 280-363 14-98 (105)
198 1why_A Hypothetical protein ri 99.7 2.1E-17 7.2E-22 123.8 11.4 78 280-361 15-94 (97)
199 1x4f_A Matrin 3; structural ge 99.7 2.9E-18 9.8E-23 129.8 6.7 84 103-192 22-108 (112)
200 2ki2_A SS-DNA binding protein 99.7 8.9E-19 3E-23 129.5 3.8 80 107-187 2-81 (90)
201 1x5o_A RNA binding motif, sing 99.7 1.6E-17 5.3E-22 128.7 11.0 82 104-186 23-112 (114)
202 2khc_A Testis-specific RNP-typ 99.7 1.3E-17 4.6E-22 129.9 10.7 79 280-358 38-118 (118)
203 2dgw_A Probable RNA-binding pr 99.7 2E-17 6.8E-22 122.4 11.0 79 280-360 8-87 (91)
204 1x4b_A Heterogeneous nuclear r 99.7 7.3E-18 2.5E-22 130.9 9.1 81 106-187 27-107 (116)
205 2cq4_A RNA binding motif prote 99.7 6.2E-18 2.1E-22 130.9 8.6 82 281-363 24-107 (114)
206 2cpj_A Non-POU domain-containi 99.7 1.8E-17 6.3E-22 124.7 10.9 79 280-362 13-91 (99)
207 1x4b_A Heterogeneous nuclear r 99.7 1.7E-17 6E-22 128.8 11.1 83 280-363 25-109 (116)
208 2nlw_A Eukaryotic translation 99.7 1.4E-17 4.8E-22 126.6 10.4 81 281-361 14-101 (105)
209 2cqg_A TDP-43, TAR DNA-binding 99.7 4.4E-17 1.5E-21 123.6 13.0 82 280-363 13-96 (103)
210 1wg5_A Heterogeneous nuclear r 99.7 2.3E-17 7.8E-22 125.2 11.3 82 280-362 13-96 (104)
211 2nlw_A Eukaryotic translation 99.7 5.9E-18 2E-22 128.7 7.9 80 105-186 14-100 (105)
212 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.1E-17 3.9E-22 134.7 10.2 81 103-183 60-140 (140)
213 2ad9_A Polypyrimidine tract-bi 99.7 9.8E-18 3.4E-22 128.4 9.1 78 103-186 28-107 (119)
214 2j76_E EIF-4B, EIF4B, eukaryot 99.7 4.7E-18 1.6E-22 128.1 7.2 79 280-360 17-98 (100)
215 2cpd_A Apobec-1 stimulating pr 99.7 6.9E-17 2.4E-21 121.5 13.6 77 280-362 13-91 (99)
216 2rs2_A Musashi-1, RNA-binding 99.7 2.8E-17 9.7E-22 125.7 11.6 83 280-363 23-107 (109)
217 2dnn_A RNA-binding protein 12; 99.7 8.2E-18 2.8E-22 127.7 8.5 78 106-186 16-93 (109)
218 2m2b_A RNA-binding protein 10; 99.7 9.7E-18 3.3E-22 133.0 9.0 82 280-362 21-110 (131)
219 2lea_A Serine/arginine-rich sp 99.7 2.6E-18 8.9E-23 136.7 5.7 83 104-186 45-127 (135)
220 2krb_A Eukaryotic translation 99.7 2.9E-18 9.8E-23 123.9 5.4 73 106-180 1-80 (81)
221 2jwn_A Embryonic polyadenylate 99.7 1.1E-17 3.9E-22 131.6 9.2 81 105-186 35-115 (124)
222 2a3j_A U1 small nuclear ribonu 99.7 1.9E-17 6.7E-22 129.3 10.4 82 280-362 27-112 (127)
223 2dis_A Unnamed protein product 99.7 4.1E-17 1.4E-21 125.2 12.0 83 281-363 7-95 (109)
224 2dnp_A RNA-binding protein 14; 99.7 4.6E-17 1.6E-21 120.1 11.7 77 280-362 7-83 (90)
225 1wez_A HnRNP H', FTP-3, hetero 99.7 1.3E-17 4.5E-22 125.7 8.8 79 280-360 13-92 (102)
226 3s7r_A Heterogeneous nuclear r 99.7 2.8E-17 9.4E-22 120.6 10.4 77 280-357 9-87 (87)
227 2ytc_A PRE-mRNA-splicing facto 99.7 2.3E-17 8E-22 120.4 9.9 75 280-358 10-85 (85)
228 2dnn_A RNA-binding protein 12; 99.7 2.3E-17 7.8E-22 125.2 10.2 77 282-360 16-93 (109)
229 1x4f_A Matrin 3; structural ge 99.7 7.1E-18 2.4E-22 127.7 7.3 80 280-363 23-105 (112)
230 1p1t_A Cleavage stimulation fa 99.7 1.1E-17 3.6E-22 127.4 8.3 83 281-363 7-91 (104)
231 2fc9_A NCL protein; structure 99.7 2.2E-17 7.4E-22 124.8 9.9 81 103-187 12-92 (101)
232 2mss_A Protein (musashi1); RNA 99.7 8.8E-18 3E-22 119.4 7.2 73 284-357 1-75 (75)
233 2hgn_A Heterogeneous nuclear r 99.7 2.9E-18 9.8E-23 136.0 5.1 80 280-361 44-124 (139)
234 3n9u_C Cleavage and polyadenyl 99.7 1.5E-17 5E-22 135.4 9.4 81 281-361 54-138 (156)
235 2cpx_A Hypothetical protein FL 99.7 4E-17 1.4E-21 126.6 11.4 82 280-363 23-108 (115)
236 1wex_A Hypothetical protein (r 99.7 2E-17 6.7E-22 124.6 9.3 78 104-187 13-92 (104)
237 2a3j_A U1 small nuclear ribonu 99.7 1.7E-17 5.9E-22 129.6 9.2 83 103-188 26-112 (127)
238 1wel_A RNA-binding protein 12; 99.7 3.3E-18 1.1E-22 134.4 5.0 82 104-186 23-104 (124)
239 2cqp_A RNA-binding protein 12; 99.7 1.3E-17 4.5E-22 125.3 8.1 81 280-360 13-95 (98)
240 2jvr_A Nucleolar protein 3; RN 99.7 1.3E-17 4.3E-22 126.9 8.0 82 101-186 23-105 (111)
241 1wg1_A KIAA1579 protein, homol 99.7 2.7E-17 9.3E-22 120.7 9.5 84 104-194 3-86 (88)
242 1iqt_A AUF1, heterogeneous nuc 99.7 4.3E-18 1.5E-22 121.1 4.9 75 108-183 1-75 (75)
243 2la4_A Nuclear and cytoplasmic 99.7 2.5E-17 8.6E-22 124.5 9.3 82 98-185 19-100 (101)
244 2lmi_A GRSF-1, G-rich sequence 99.7 3.7E-18 1.3E-22 130.3 4.6 82 103-186 8-92 (107)
245 2i2y_A Fusion protein consists 99.7 4.6E-17 1.6E-21 132.6 11.3 117 145-271 10-149 (150)
246 2xnq_A Nuclear polyadenylated 99.7 6.7E-17 2.3E-21 120.8 11.3 75 280-360 20-95 (97)
247 2dnq_A RNA-binding protein 4B; 99.7 4E-17 1.4E-21 120.5 9.9 77 103-187 5-81 (90)
248 2fc8_A NCL protein; structure 99.7 4E-17 1.4E-21 123.6 10.2 82 103-187 12-93 (102)
249 2jwn_A Embryonic polyadenylate 99.7 3.8E-17 1.3E-21 128.5 10.5 80 281-361 35-116 (124)
250 2db1_A Heterogeneous nuclear r 99.7 2.3E-17 8E-22 128.0 9.0 81 280-361 15-99 (118)
251 2krb_A Eukaryotic translation 99.7 9.8E-18 3.3E-22 121.0 6.4 73 283-355 2-81 (81)
252 2kvi_A Nuclear polyadenylated 99.7 1.8E-17 6E-22 123.9 7.9 77 280-362 8-85 (96)
253 2jvo_A Nucleolar protein 3; nu 99.7 3.5E-17 1.2E-21 124.8 9.7 77 280-362 29-105 (108)
254 1x4g_A Nucleolysin TIAR; struc 99.7 4E-17 1.4E-21 125.1 10.0 82 101-188 20-101 (109)
255 2cqh_A IGF-II mRNA-binding pro 99.7 3E-17 1E-21 122.0 8.8 78 280-362 6-85 (93)
256 2ki2_A SS-DNA binding protein 99.7 7.6E-18 2.6E-22 124.4 5.6 79 283-362 2-82 (90)
257 1whx_A Hypothetical protein ri 99.7 4.2E-17 1.4E-21 125.1 9.8 76 282-361 10-85 (111)
258 1x5o_A RNA binding motif, sing 99.7 6.1E-17 2.1E-21 125.3 10.8 81 280-360 23-112 (114)
259 1sjr_A Polypyrimidine tract-bi 99.7 6.9E-17 2.4E-21 130.0 11.4 79 282-362 46-126 (164)
260 2la4_A Nuclear and cytoplasmic 99.7 2.6E-17 8.9E-22 124.4 8.5 75 282-360 27-101 (101)
261 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1E-16 3.6E-21 129.0 12.5 78 280-357 61-140 (140)
262 2ek1_A RNA-binding protein 12; 99.7 1E-17 3.5E-22 125.1 6.0 79 281-359 14-94 (95)
263 1why_A Hypothetical protein ri 99.7 4.8E-17 1.6E-21 121.9 9.7 79 103-187 14-94 (97)
264 2dha_A FLJ20171 protein; RRM d 99.7 9.8E-18 3.4E-22 130.0 6.0 80 104-185 21-104 (123)
265 1x4c_A Splicing factor, argini 99.7 7.3E-17 2.5E-21 123.3 10.8 77 104-187 13-94 (108)
266 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.7E-17 5.7E-22 118.7 6.6 74 283-357 1-76 (77)
267 2ytc_A PRE-mRNA-splicing facto 99.7 5.3E-17 1.8E-21 118.5 9.4 76 103-184 9-85 (85)
268 2hgm_A HNRPF protein, heteroge 99.7 1.5E-17 5.1E-22 129.2 6.6 80 103-185 39-120 (126)
269 2hgl_A HNRPF protein, heteroge 99.7 1.3E-17 4.5E-22 131.8 6.4 81 280-361 42-126 (136)
270 1nu4_A U1A RNA binding domain; 99.7 2.7E-17 9.1E-22 123.4 7.7 83 103-188 5-91 (97)
271 2fc8_A NCL protein; structure 99.7 9.6E-17 3.3E-21 121.5 10.8 80 280-362 13-94 (102)
272 2xnq_A Nuclear polyadenylated 99.7 1E-16 3.5E-21 119.8 10.8 79 100-186 16-95 (97)
273 1x4e_A RNA binding motif, sing 99.7 6.2E-18 2.1E-22 123.4 3.9 78 281-358 4-83 (85)
274 1fj7_A Nucleolin RBD1, protein 99.7 2.8E-18 9.7E-23 129.7 2.1 81 104-186 15-95 (101)
275 2e44_A Insulin-like growth fac 99.7 1.5E-16 5E-21 119.0 11.3 79 281-361 14-93 (96)
276 3lqv_A PRE-mRNA branch site pr 99.7 6.4E-17 2.2E-21 125.4 9.6 82 280-362 6-87 (115)
277 2e5g_A U6 snRNA-specific termi 99.7 8.5E-17 2.9E-21 119.7 9.9 78 281-362 7-84 (94)
278 2cq2_A Hypothetical protein LO 99.7 1.1E-16 3.7E-21 121.2 10.4 78 280-361 23-107 (114)
279 1nu4_A U1A RNA binding domain; 99.7 4.7E-17 1.6E-21 122.0 8.4 80 280-361 6-90 (97)
280 2diu_A KIAA0430 protein; struc 99.7 8.9E-17 3E-21 114.8 9.1 78 105-192 8-90 (96)
281 2lcw_A RNA-binding protein FUS 99.5 1.5E-18 5.3E-23 134.7 0.0 84 104-187 5-96 (116)
282 2hgn_A Heterogeneous nuclear r 99.7 8.9E-18 3E-22 133.2 4.2 81 103-186 43-123 (139)
283 1fjc_A Nucleolin RBD2, protein 99.7 6.2E-17 2.1E-21 121.1 8.6 79 280-362 14-93 (96)
284 2jvo_A Nucleolar protein 3; nu 99.7 1E-16 3.5E-21 122.2 9.9 78 102-187 27-104 (108)
285 2lmi_A GRSF-1, G-rich sequence 99.7 1.8E-17 6.1E-22 126.5 5.6 81 280-361 9-93 (107)
286 2e5j_A Methenyltetrahydrofolat 99.7 8.8E-17 3E-21 120.4 9.2 79 280-361 17-95 (97)
287 2e5j_A Methenyltetrahydrofolat 99.7 6.8E-17 2.3E-21 121.0 8.4 79 104-187 17-95 (97)
288 2cpx_A Hypothetical protein FL 99.7 1.2E-17 3.9E-22 129.7 4.3 80 104-187 23-106 (115)
289 2dgt_A RNA-binding protein 30; 99.7 1.5E-16 5E-21 117.9 10.0 79 102-188 6-84 (92)
290 2j8a_A Histone-lysine N-methyl 99.7 5.3E-17 1.8E-21 122.8 7.6 80 107-186 3-96 (136)
291 2f3j_A RNA and export factor b 99.7 7.3E-17 2.5E-21 134.4 9.1 86 102-188 84-169 (177)
292 2diu_A KIAA0430 protein; struc 99.7 2.1E-16 7E-21 112.9 10.0 72 284-363 11-87 (96)
293 2dnp_A RNA-binding protein 14; 99.7 1.4E-16 4.9E-21 117.5 9.5 77 103-187 6-82 (90)
294 1x5p_A Negative elongation fac 99.7 6.4E-16 2.2E-20 115.6 13.1 78 280-363 13-90 (97)
295 1fjc_A Nucleolin RBD2, protein 99.7 4.1E-17 1.4E-21 122.1 6.5 78 105-187 15-92 (96)
296 2dnl_A Cytoplasmic polyadenyla 99.7 1.5E-16 5E-21 122.9 9.8 78 104-184 6-86 (114)
297 1fj7_A Nucleolin RBD1, protein 99.7 2.5E-17 8.6E-22 124.5 5.3 81 281-363 16-98 (101)
298 3zzy_A Polypyrimidine tract-bi 99.7 3E-16 1E-20 121.6 11.4 78 282-362 28-108 (130)
299 2xs2_A Deleted in azoospermia- 99.7 2.5E-17 8.7E-22 124.7 5.2 80 105-187 8-87 (102)
300 1whx_A Hypothetical protein ri 99.7 4.9E-17 1.7E-21 124.7 6.8 75 105-185 9-83 (111)
301 2lcw_A RNA-binding protein FUS 99.5 3.1E-18 1.1E-22 133.0 0.0 83 280-362 5-97 (116)
302 1iqt_A AUF1, heterogeneous nuc 99.7 4.6E-17 1.6E-21 115.7 6.1 73 284-357 1-75 (75)
303 2dgu_A Heterogeneous nuclear r 99.7 1.7E-16 5.9E-21 120.2 9.7 76 104-187 9-84 (103)
304 3beg_B Splicing factor, argini 99.7 2E-16 6.9E-21 122.2 10.0 75 281-360 15-94 (115)
305 2kvi_A Nuclear polyadenylated 99.7 9.2E-17 3.2E-21 120.0 7.6 77 102-186 6-83 (96)
306 2cpd_A Apobec-1 stimulating pr 99.7 3.5E-16 1.2E-20 117.6 10.8 76 104-187 13-90 (99)
307 2dha_A FLJ20171 protein; RRM d 99.7 4.2E-17 1.4E-21 126.5 5.7 80 281-361 22-106 (123)
308 2e5i_A Heterogeneous nuclear r 99.7 5.3E-16 1.8E-20 119.8 11.2 77 282-362 25-104 (124)
309 1wel_A RNA-binding protein 12; 99.7 6.1E-17 2.1E-21 127.1 5.9 81 280-361 23-105 (124)
310 2xs2_A Deleted in azoospermia- 99.7 1.1E-16 3.8E-21 121.1 7.1 81 281-363 8-89 (102)
311 3d2w_A TAR DNA-binding protein 99.7 5E-16 1.7E-20 113.8 10.2 76 280-362 9-86 (89)
312 2f3j_A RNA and export factor b 99.7 3.4E-16 1.2E-20 130.3 10.3 83 280-362 86-169 (177)
313 1wg1_A KIAA1579 protein, homol 99.7 2.2E-16 7.6E-21 115.8 8.0 76 281-361 4-79 (88)
314 2cqh_A IGF-II mRNA-binding pro 99.7 1.4E-16 4.8E-21 118.3 7.0 78 103-187 5-84 (93)
315 2hgm_A HNRPF protein, heteroge 99.7 1.2E-16 4.2E-21 124.0 6.9 80 280-361 40-122 (126)
316 2e5g_A U6 snRNA-specific termi 99.7 4.4E-16 1.5E-20 115.8 9.3 77 104-186 6-82 (94)
317 3md3_A Nuclear and cytoplasmic 99.7 6.9E-16 2.4E-20 128.1 11.5 82 103-184 84-165 (166)
318 2e44_A Insulin-like growth fac 99.7 2.3E-16 7.9E-21 118.0 7.7 78 105-186 14-92 (96)
319 1wf1_A RNA-binding protein RAL 99.6 3.8E-16 1.3E-20 119.9 8.9 74 105-186 26-100 (110)
320 3egn_A RNA-binding protein 40; 99.6 6.4E-17 2.2E-21 130.6 4.5 81 103-186 42-130 (143)
321 1x5p_A Negative elongation fac 99.6 1E-15 3.5E-20 114.5 10.6 76 104-187 13-88 (97)
322 2pe8_A Splicing factor 45; RRM 99.6 1.2E-15 4.2E-20 114.9 10.8 82 104-185 6-93 (105)
323 3zzy_A Polypyrimidine tract-bi 99.6 8.8E-16 3E-20 118.9 10.2 78 105-187 27-107 (130)
324 1wf0_A TDP-43, TAR DNA-binding 99.6 4.3E-16 1.5E-20 114.3 8.0 78 281-363 4-81 (88)
325 3pgw_S U1-70K; protein-RNA com 99.6 6.1E-16 2.1E-20 147.2 10.9 82 105-186 101-182 (437)
326 3egn_A RNA-binding protein 40; 99.6 2.7E-16 9.3E-21 126.8 7.1 82 280-363 43-133 (143)
327 2cq2_A Hypothetical protein LO 99.6 5.5E-16 1.9E-20 117.3 8.2 79 100-184 19-104 (114)
328 3pgw_A U1-A; protein-RNA compl 99.6 1E-14 3.5E-19 132.1 18.3 81 280-361 7-91 (282)
329 4f02_A Polyadenylate-binding p 99.6 9.1E-16 3.1E-20 132.8 10.7 82 280-361 13-96 (213)
330 3d2w_A TAR DNA-binding protein 99.6 1E-15 3.6E-20 112.1 9.1 75 103-186 8-84 (89)
331 2g4b_A Splicing factor U2AF 65 99.6 1.1E-15 3.6E-20 127.8 10.2 79 105-183 93-171 (172)
332 2hzc_A Splicing factor U2AF 65 99.6 1.4E-15 4.9E-20 111.4 9.6 72 280-356 4-86 (87)
333 2pe8_A Splicing factor 45; RRM 99.6 1.6E-15 5.4E-20 114.3 9.9 81 280-360 6-94 (105)
334 1sjr_A Polypyrimidine tract-bi 99.6 1.1E-15 3.9E-20 122.9 9.5 79 105-187 45-125 (164)
335 3tyt_A Heterogeneous nuclear r 99.6 1.5E-15 5.1E-20 129.9 10.9 78 281-361 3-81 (205)
336 2qfj_A FBP-interacting repress 99.6 1.5E-15 5E-20 132.0 10.9 83 104-186 123-205 (216)
337 3beg_B Splicing factor, argini 99.6 6.4E-16 2.2E-20 119.3 7.0 74 105-185 15-93 (115)
338 2voo_A Lupus LA protein; RNA-b 99.6 3E-15 1E-19 126.5 11.8 121 240-361 64-188 (193)
339 2j8a_A Histone-lysine N-methyl 99.6 1.6E-15 5.3E-20 114.8 8.7 77 283-359 3-95 (136)
340 2hzc_A Splicing factor U2AF 65 99.6 1.1E-15 3.6E-20 112.1 7.8 71 105-182 5-86 (87)
341 2yh0_A Splicing factor U2AF 65 99.6 1.8E-15 6.1E-20 129.5 10.4 85 103-187 111-195 (198)
342 2cjk_A Nuclear polyadenylated 99.6 7E-16 2.4E-20 128.3 6.7 81 105-186 86-166 (167)
343 2e5i_A Heterogeneous nuclear r 99.6 4.4E-15 1.5E-19 114.6 10.3 74 108-187 27-103 (124)
344 1fxl_A Paraneoplastic encephal 99.6 3.7E-15 1.3E-19 123.8 10.7 81 282-362 2-84 (167)
345 1b7f_A Protein (SXL-lethal pro 99.6 4.3E-15 1.5E-19 123.6 10.9 80 104-183 87-168 (168)
346 1l3k_A Heterogeneous nuclear r 99.6 3.7E-15 1.3E-19 127.3 10.7 84 104-188 102-185 (196)
347 2bz2_A Negative elongation fac 99.6 2.9E-15 9.9E-20 116.4 8.7 77 280-362 37-113 (121)
348 2dit_A HIV TAT specific factor 99.6 1.6E-14 5.4E-19 111.0 12.5 81 280-362 13-104 (112)
349 1wf0_A TDP-43, TAR DNA-binding 99.6 1.2E-15 4.2E-20 111.8 5.6 77 104-187 3-79 (88)
350 2voo_A Lupus LA protein; RNA-b 99.6 6.1E-15 2.1E-19 124.7 10.3 79 105-185 108-186 (193)
351 2dnl_A Cytoplasmic polyadenyla 99.6 1.5E-14 5E-19 111.6 11.1 76 281-359 7-87 (114)
352 2bz2_A Negative elongation fac 99.6 6.5E-15 2.2E-19 114.4 8.9 77 102-186 35-111 (121)
353 3v4m_A Splicing factor U2AF 65 99.6 1.1E-14 3.8E-19 109.8 9.6 80 281-360 4-97 (105)
354 3nmr_A Cugbp ELAV-like family 99.6 1.1E-14 3.8E-19 121.9 10.3 78 105-183 94-174 (175)
355 2dit_A HIV TAT specific factor 99.5 2.7E-14 9.3E-19 109.6 10.5 85 101-189 10-105 (112)
356 3u1l_A PRE-mRNA-splicing facto 99.5 5.7E-15 2E-19 127.3 7.0 79 280-362 132-231 (240)
357 1fje_B Nucleolin RBD12, protei 99.5 1.4E-14 4.9E-19 121.2 8.9 77 105-186 98-174 (175)
358 2adc_A Polypyrimidine tract-bi 99.5 3.8E-14 1.3E-18 124.0 10.8 79 280-361 32-111 (229)
359 3u1l_A PRE-mRNA-splicing facto 99.5 1.9E-14 6.6E-19 124.0 8.5 80 102-187 130-230 (240)
360 3v4m_A Splicing factor U2AF 65 99.5 3E-14 1E-18 107.3 8.5 82 104-185 3-96 (105)
361 1jmt_A Splicing factor U2AF 35 99.5 6.3E-15 2.2E-19 111.0 4.5 71 287-357 20-103 (104)
362 3ue2_A Poly(U)-binding-splicin 99.5 4E-14 1.4E-18 108.7 8.8 81 105-185 19-108 (118)
363 1qm9_A Polypyrimidine tract-bi 99.5 4.6E-14 1.6E-18 120.7 8.1 76 283-361 4-80 (198)
364 3ue2_A Poly(U)-binding-splicin 99.5 6.1E-14 2.1E-18 107.7 7.3 80 280-359 18-108 (118)
365 3sde_A Paraspeckle component 1 99.5 1.7E-13 5.8E-18 122.3 11.1 77 280-360 20-96 (261)
366 1jmt_A Splicing factor U2AF 35 99.5 2.5E-14 8.6E-19 107.7 4.1 72 111-183 20-103 (104)
367 3s6e_A RNA-binding protein 39; 99.5 4E-13 1.4E-17 102.3 10.0 79 280-360 5-93 (114)
368 2d9o_A DNAJ (HSP40) homolog, s 99.4 8.6E-13 3E-17 97.9 10.6 66 292-362 27-92 (100)
369 3tht_A Alkylated DNA repair pr 99.4 1.8E-12 6.1E-17 118.0 10.0 75 280-358 16-97 (345)
370 2d9o_A DNAJ (HSP40) homolog, s 99.3 4.3E-12 1.5E-16 94.1 9.5 74 106-186 10-90 (100)
371 3s6e_A RNA-binding protein 39; 99.3 7.3E-12 2.5E-16 95.3 9.0 78 103-184 4-91 (114)
372 3tht_A Alkylated DNA repair pr 99.3 4.1E-12 1.4E-16 115.6 8.3 78 101-184 13-97 (345)
373 2dnr_A Synaptojanin-1; RRM dom 99.3 2.4E-11 8.2E-16 86.0 9.6 74 280-360 5-86 (91)
374 1owx_A Lupus LA protein, SS-B, 99.2 6.4E-11 2.2E-15 89.9 9.8 76 280-359 16-95 (121)
375 2dnr_A Synaptojanin-1; RRM dom 99.2 7.7E-11 2.6E-15 83.4 7.5 75 103-186 4-86 (91)
376 1owx_A Lupus LA protein, SS-B, 99.2 1.2E-10 4.1E-15 88.4 9.0 76 103-184 15-94 (121)
377 1ufw_A Synaptojanin 2; RNP dom 99.1 3.8E-10 1.3E-14 80.2 8.0 73 280-359 13-94 (95)
378 1ufw_A Synaptojanin 2; RNP dom 99.0 4.4E-10 1.5E-14 79.9 5.1 76 100-184 9-93 (95)
379 3dxb_A Thioredoxin N-terminall 98.9 2.2E-09 7.5E-14 93.1 6.2 66 294-359 141-212 (222)
380 2l9w_A U4/U6 snRNA-associated- 98.9 1.2E-08 4.1E-13 73.7 8.9 71 282-356 21-96 (117)
381 3dxb_A Thioredoxin N-terminall 98.8 1.2E-08 4E-13 88.4 9.6 83 102-184 120-211 (222)
382 2l9w_A U4/U6 snRNA-associated- 98.6 4.8E-07 1.6E-11 65.5 9.5 73 105-183 20-97 (117)
383 2dhx_A Poly (ADP-ribose) polym 98.2 1.8E-05 6.2E-10 56.9 10.9 87 104-199 6-99 (104)
384 1wey_A Calcipressin 1; structu 98.0 4E-05 1.4E-09 55.5 8.8 74 283-360 6-84 (104)
385 2dhx_A Poly (ADP-ribose) polym 98.0 0.00018 6E-09 51.8 11.4 76 280-362 6-86 (104)
386 1wey_A Calcipressin 1; structu 97.9 3.2E-05 1.1E-09 56.0 6.5 74 106-185 5-83 (104)
387 1uw4_A UPF3X; nonsense mediate 97.8 9.6E-05 3.3E-09 52.7 7.5 68 107-174 2-71 (91)
388 1uw4_A UPF3X; nonsense mediate 97.7 0.00017 5.9E-09 51.4 7.7 76 283-358 2-86 (91)
389 1wwh_A Nucleoporin 35, nucleop 97.4 0.00093 3.2E-08 49.9 8.3 72 281-358 23-95 (119)
390 1whv_A Poly(A)-specific ribonu 97.3 0.00089 3.1E-08 47.5 7.0 56 105-169 15-70 (100)
391 1wwh_A Nucleoporin 35, nucleop 97.2 0.0011 3.9E-08 49.4 7.6 71 105-183 23-94 (119)
392 1whv_A Poly(A)-specific ribonu 97.1 0.0012 4.2E-08 46.8 6.4 54 283-343 17-70 (100)
393 2l08_A Regulator of nonsense t 97.1 0.0013 4.3E-08 47.1 6.4 76 283-358 10-94 (97)
394 2l08_A Regulator of nonsense t 97.0 0.00078 2.7E-08 48.2 4.8 69 106-174 9-79 (97)
395 3ctr_A Poly(A)-specific ribonu 97.0 0.001 3.5E-08 47.4 4.7 54 283-343 7-60 (101)
396 3ctr_A Poly(A)-specific ribonu 96.9 0.0014 4.9E-08 46.6 5.1 54 107-169 7-60 (101)
397 3p3d_A Nucleoporin 53; structu 96.5 0.0028 9.6E-08 47.9 4.7 76 283-360 8-99 (132)
398 3pq1_A Poly(A) RNA polymerase; 95.9 0.0052 1.8E-07 57.9 4.0 55 283-341 54-108 (464)
399 3p3d_A Nucleoporin 53; structu 95.7 0.011 3.7E-07 44.8 4.3 77 106-184 7-97 (132)
400 3pq1_A Poly(A) RNA polymerase; 95.5 0.0068 2.3E-07 57.1 3.2 55 106-166 53-107 (464)
401 3d45_A Poly(A)-specific ribonu 87.5 1.6 5.3E-05 42.1 8.0 55 283-344 441-495 (507)
402 3d45_A Poly(A)-specific ribonu 87.2 1.4 4.8E-05 42.4 7.5 55 107-170 441-495 (507)
403 2g0c_A ATP-dependent RNA helic 75.6 7.4 0.00025 26.1 5.8 60 292-358 11-75 (76)
404 4e8u_A Putative uncharacterize 66.8 7.2 0.00025 31.0 4.5 51 283-334 13-74 (172)
405 4eyt_A Telomerase associated p 62.8 34 0.0012 23.4 9.5 69 281-355 11-86 (129)
406 3j21_T 50S ribosomal protein L 56.3 36 0.0012 23.5 6.0 57 285-342 25-83 (86)
407 3tj1_A RNA polymerase I-specif 55.9 2.1 7.3E-05 42.0 -0.3 9 158-166 415-423 (649)
408 4eyt_A Telomerase associated p 49.3 61 0.0021 22.2 8.4 58 104-169 10-67 (129)
409 4e8u_A Putative uncharacterize 45.5 38 0.0013 26.8 5.4 48 108-158 14-72 (172)
410 1vq8_S 50S ribosomal protein L 39.4 63 0.0021 22.2 5.1 55 285-340 24-80 (85)
411 2cu1_A Mitogen-activated prote 33.7 1.3E+02 0.0043 21.3 6.8 68 287-361 21-89 (103)
412 4a17_R RPL23A, 60S ribosomal p 30.9 1E+02 0.0034 23.8 5.4 56 285-341 89-146 (150)
413 1xn9_A 30S ribosomal protein S 30.6 1.3E+02 0.0045 21.4 5.7 49 116-165 28-81 (101)
414 3u5e_X 60S ribosomal protein L 30.4 1.1E+02 0.0037 23.4 5.5 56 285-341 81-138 (142)
415 2pk2_A Cyclin-T1, protein TAT; 29.0 12 0.0004 34.1 0.0 13 293-305 228-240 (358)
416 1ywx_A 30S ribosomal protein S 27.3 1.4E+02 0.0047 21.3 5.3 47 116-163 28-79 (102)
417 3fry_A Probable copper-exporti 26.5 1.3E+02 0.0044 19.1 5.6 54 283-341 7-60 (73)
418 3l9o_A ATP-dependent RNA helic 25.4 20 0.00069 38.1 1.0 20 149-168 228-247 (1108)
419 3iz5_X 60S ribosomal protein L 24.6 1.1E+02 0.0038 23.6 4.7 56 285-341 91-148 (152)
420 2zkr_s 60S ribosomal protein L 23.7 1.6E+02 0.0053 22.9 5.4 56 285-341 95-152 (156)
421 2v94_A RPS24, 30S ribosomal pr 23.7 1.7E+02 0.0058 21.1 5.3 48 116-164 37-89 (107)
422 2i9x_A Putative septation prot 22.4 1.2E+02 0.004 21.0 4.1 25 132-156 5-29 (87)
423 4aco_A Centromere DNA-binding 21.6 19 0.00067 36.0 0.0 8 120-127 757-764 (956)
424 4bby_A Alkyldihydroxyacetoneph 20.5 66 0.0022 32.0 3.5 54 290-343 351-409 (658)
No 1
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=3.7e-46 Score=341.81 Aligned_cols=252 Identities=19% Similarity=0.321 Sum_probs=215.2
Q ss_pred hcCCCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 013716 99 LLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (437)
Q Consensus 99 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 178 (437)
..+.++..++|||+|||+++|+++|+++|+.||.|..|+|+++.. .++|||||+|.+.++|.+|+ .+++..+.|+.|
T Consensus 34 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i 110 (292)
T 2ghp_A 34 ALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK--KNFRFARIEFARYDGALAAI-TKTHKVVGQNEI 110 (292)
T ss_dssp --------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT--SSSEEEEEEESSHHHHHHHH-TTTTCEETTEEC
T ss_pred ccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC--CCcEEEEEEECCHHHHHHHH-HhCCcEeCCcEE
Confidence 444556789999999999999999999999999999999999874 25899999999999999999 589999999999
Q ss_pred EEeeccccccccccCCCCCCCHHHHHHHHHhhC-CceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCccc
Q 013716 179 RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVG-PGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKL 257 (437)
Q Consensus 179 ~v~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~ 257 (437)
.|.++. .++|||+|||..+++++|+++|+.|| . |..+.++.++. +.+++||||.|.+.++|.+|+..+++. .+
T Consensus 111 ~v~~~~-~~~l~v~nlp~~~t~~~l~~~f~~~G~~-i~~v~i~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~--~~ 184 (292)
T 2ghp_A 111 IVSHLT-ECTLWMTNFPPSYTQRNIRDLLQDINVV-ALSIRLPSLRF--NTSRRFAYIDVTSKEDARYCVEKLNGL--KI 184 (292)
T ss_dssp EEEECC-SCEEEEECCCTTCCHHHHHHHHHHTTCC-CCEEECC---------CCEEEEECSSHHHHHHHHHHHTTC--EE
T ss_pred EEEECC-CCEEEEECCCCCCCHHHHHHHHHHhCCC-eEEEEEEeCCC--CCcceEEEEEECCHHHHHHHHHHhCCC--Ee
Confidence 999884 78999999999999999999999999 7 99999998743 778999999999999999999999875 67
Q ss_pred CCCCCeeeecCCCCCCCCc-ccccCcceEEEecCCCC-CCHHHHHHHHhccCCeeEEEeCCCCC--CC-ccEEEEEeCCH
Q 013716 258 DGNTPTISWADPKSTPDHS-AAASQVKALYVKNIPDN-TSTEKIKELFQRHGEVTKVVMPPGKS--GK-RDFGFIHYAER 332 (437)
Q Consensus 258 ~~~~~~v~~~~~~~~~~~~-~~~~~~~~l~V~nLp~~-~t~~~L~~~f~~~G~v~~v~i~~~~~--~~-~g~afV~f~~~ 332 (437)
.++.+.+.|+.+....... ......++|||+|||+. +++++|+++|++||.|..|+|+.+.. +. +|||||+|.+.
T Consensus 185 ~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~ 264 (292)
T 2ghp_A 185 EGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENK 264 (292)
T ss_dssp TTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSH
T ss_pred CCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCH
Confidence 8999999999888765544 44456789999999999 99999999999999999999999876 55 99999999999
Q ss_pred HHHHHHHHhcCCceeCCeEEEEEeccCC
Q 013716 333 SSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (437)
Q Consensus 333 ~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (437)
++|.+|+ .|||+.|+|++|+|.|+.++
T Consensus 265 ~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 265 DSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp HHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred HHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 9999999 99999999999999999875
No 2
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=4.9e-46 Score=339.55 Aligned_cols=247 Identities=21% Similarity=0.395 Sum_probs=227.3
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
...+++|||+|||+++|+++|+++|+.|| |..+++ ++++|||||+|.+.++|.+|++.|++..+.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~------~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 91 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV------DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL 91 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE------ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE------ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe
Confidence 34679999999999999999999999999 999988 56789999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCC
Q 013716 183 SETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTP 262 (437)
Q Consensus 183 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~ 262 (437)
+...++|||+|||..+++++|+++|+.||. |..+.++.+ ..++.++|||||.|.+.++|.+|+..+++. .+.++.+
T Consensus 92 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~-i~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~~~--~~~g~~i 167 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQQQFEELVRPFGS-LERCFLVYS-ERTGQSKGYGFAEYMKKDSAARAKSDLLGK--PLGPRTL 167 (284)
T ss_dssp CCCSCEEEEESCCTTCCHHHHHHHHGGGSC-EEEEEEEEC-TTTCCEEEEEEEEESSHHHHHHHHHHHTTC--EETTEEC
T ss_pred cCCCCEEEEcCCCCcCCHHHHHHHHHhcCC-eeEEEEEee-CCCCccceEEEEEECCHHHHHHHHHHhCCC--EeCCcEE
Confidence 999999999999999999999999999998 999999988 467889999999999999999999999875 6789999
Q ss_pred eeeecCCCCCCCCcccccCcceEEEecCCCCC-CHHHHHHHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHH
Q 013716 263 TISWADPKSTPDHSAAASQVKALYVKNIPDNT-STEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVK 340 (437)
Q Consensus 263 ~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~-t~~~L~~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~ 340 (437)
.+.|+.+..... .....++|||+|||+.+ ++++|+++|+.||.|..|.|+.+..+. +|||||+|.+.++|.+|+.
T Consensus 168 ~v~~a~~~~~~~---~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~ 244 (284)
T 3smz_A 168 YVHWTDAGQLTP---ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQ 244 (284)
T ss_dssp EEEECCGGGCCT---TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHH
T ss_pred EEEECCCCCCCc---ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHH
Confidence 999998765432 22456899999999995 999999999999999999999888777 9999999999999999999
Q ss_pred hcCCceeCCeEEEEEeccCCCCC
Q 013716 341 DTEKYEIDGQVLEVVLAKPQTDK 363 (437)
Q Consensus 341 ~l~g~~i~g~~l~v~~a~~~~~~ 363 (437)
.|||+.|+|++|+|.|+.++..+
T Consensus 245 ~l~g~~~~g~~l~v~~a~~~~~~ 267 (284)
T 3smz_A 245 QADGLSLGGSHLRVSFCAPGPPG 267 (284)
T ss_dssp HHTTCEETTEECEEEECCSSSCH
T ss_pred HhCCCccCCeEEEEEEecCCCcc
Confidence 99999999999999999877653
No 3
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=4.9e-37 Score=267.05 Aligned_cols=170 Identities=22% Similarity=0.446 Sum_probs=152.7
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
+.+||||+|||+++|+++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|.+|++.+++..+.|+.|++.++.
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~ 93 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQ 93 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccc
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999887764
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCee
Q 013716 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (437)
Q Consensus 185 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (437)
..... .
T Consensus 94 ~~~~~-----------------------------------------------------------~--------------- 99 (213)
T 4f02_A 94 RDPSL-----------------------------------------------------------R--------------- 99 (213)
T ss_dssp CCTHH-----------------------------------------------------------H---------------
T ss_pred ccccc-----------------------------------------------------------c---------------
Confidence 22110 0
Q ss_pred eecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCC
Q 013716 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK 344 (437)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 344 (437)
.....+|||+|||+.+++++|+++|++||.|..|+|+++..+++|||||+|.+.++|.+||..|||
T Consensus 100 --------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng 165 (213)
T 4f02_A 100 --------------KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 165 (213)
T ss_dssp --------------HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred --------------ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCC
Confidence 011258999999999999999999999999999999988766699999999999999999999999
Q ss_pred ceeCCeEEEEEeccCCCC
Q 013716 345 YEIDGQVLEVVLAKPQTD 362 (437)
Q Consensus 345 ~~i~g~~l~v~~a~~~~~ 362 (437)
+.|+|++|+|.|+.++..
T Consensus 166 ~~~~g~~i~V~~a~~~~~ 183 (213)
T 4f02_A 166 MLLNDRKVFVGRFKSRKE 183 (213)
T ss_dssp CEETTEECEEEECCCHHH
T ss_pred CEECCEEEEEEEcCCCcc
Confidence 999999999999987644
No 4
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.3e-33 Score=243.02 Aligned_cols=177 Identities=23% Similarity=0.456 Sum_probs=147.9
Q ss_pred CCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEe
Q 013716 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (437)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 181 (437)
.+...++|||+|||+++|+++|+++|+.||.|..|+|++++.+|+++|||||+|.+.++|.+|++. ++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 344678999999999999999999999999999999999999999999999999999999999965 8999999999998
Q ss_pred eccccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCC
Q 013716 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (437)
Q Consensus 182 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 261 (437)
++...... . .
T Consensus 88 ~~~~~~~~-------------------------------------~-~-------------------------------- 97 (196)
T 1l3k_A 88 RAVSREDS-------------------------------------Q-R-------------------------------- 97 (196)
T ss_dssp ECCC----------------------------------------------------------------------------
T ss_pred cccCcccc-------------------------------------c-c--------------------------------
Confidence 87532110 0 0
Q ss_pred CeeeecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCC-CC-ccEEEEEeCCHHHHHHHH
Q 013716 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAV 339 (437)
Q Consensus 262 ~~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-~g~afV~f~~~~~A~~A~ 339 (437)
.......++|||+|||+.+++++|+++|+.||.|..|.|+.+.. +. +|||||+|.+.++|.+|+
T Consensus 98 --------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 163 (196)
T 1l3k_A 98 --------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163 (196)
T ss_dssp -------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred --------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHH
Confidence 00002236899999999999999999999999999999998864 33 999999999999999999
Q ss_pred HhcCCceeCCeEEEEEeccCCCCCC
Q 013716 340 KDTEKYEIDGQVLEVVLAKPQTDKK 364 (437)
Q Consensus 340 ~~l~g~~i~g~~l~v~~a~~~~~~~ 364 (437)
.. +++.|+|+.|.|.|+.++....
T Consensus 164 ~~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 164 IQ-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp HC-SCCEETTEECEEEECC------
T ss_pred Hh-CCcEECCEEEEEEecCChhHhc
Confidence 86 8999999999999998876653
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=2.8e-33 Score=234.64 Aligned_cols=163 Identities=27% Similarity=0.509 Sum_probs=148.7
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
+.++|||+|||+++|+++|+++|+.||.|..|++++++.+|+++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998889999999999999999999999999999999999998875
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCee
Q 013716 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (437)
Q Consensus 185 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (437)
+...
T Consensus 82 ~~~~---------------------------------------------------------------------------- 85 (168)
T 1b7f_A 82 PGGE---------------------------------------------------------------------------- 85 (168)
T ss_dssp CCSS----------------------------------------------------------------------------
T ss_pred CCcc----------------------------------------------------------------------------
Confidence 3211
Q ss_pred eecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCC-CCC-ccEEEEEeCCHHHHHHHHHhc
Q 013716 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGK-RDFGFIHYAERSSALKAVKDT 342 (437)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~-~~~-~g~afV~f~~~~~A~~A~~~l 342 (437)
....++|||+|||..+++++|+++|++||.|..+.+++++ .+. +|||||+|.+.++|.+|+..|
T Consensus 86 --------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 151 (168)
T 1b7f_A 86 --------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 151 (168)
T ss_dssp --------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred --------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 0122689999999999999999999999999999998877 344 899999999999999999999
Q ss_pred CCceeCC--eEEEEEec
Q 013716 343 EKYEIDG--QVLEVVLA 357 (437)
Q Consensus 343 ~g~~i~g--~~l~v~~a 357 (437)
||..|.| ++|+|.||
T Consensus 152 ~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 152 NNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TTCCCTTCSSCCEEEEC
T ss_pred cCCEecCCCeEEEEEeC
Confidence 9999988 99999986
No 6
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-33 Score=233.21 Aligned_cols=164 Identities=18% Similarity=0.366 Sum_probs=146.5
Q ss_pred CeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecccc
Q 013716 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (437)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~ 186 (437)
|+|||+|||+++|+++|+++|++||.|..|++++++. ++++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 6899999999999999999999999999999999875 889999999999999999999999999999999999887532
Q ss_pred ccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCeeee
Q 013716 187 NRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISW 266 (437)
Q Consensus 187 ~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~ 266 (437)
..
T Consensus 80 ~~------------------------------------------------------------------------------ 81 (166)
T 3md3_A 80 QQ------------------------------------------------------------------------------ 81 (166)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred CC------------------------------------------------------------------------------
Confidence 10
Q ss_pred cCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCC-C-ccEEEEEeCCHHHHHHHHHhcCC
Q 013716 267 ADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEK 344 (437)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-~g~afV~f~~~~~A~~A~~~l~g 344 (437)
......++|||+|||..+++++|+++|++||.|..+.++.+..+ . +|||||+|.+.++|.+|+..|||
T Consensus 82 ----------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 151 (166)
T 3md3_A 82 ----------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQG 151 (166)
T ss_dssp ----------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred ----------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Confidence 00022368999999999999999999999999999999877543 3 89999999999999999999999
Q ss_pred ceeCCeEEEEEeccC
Q 013716 345 YEIDGQVLEVVLAKP 359 (437)
Q Consensus 345 ~~i~g~~l~v~~a~~ 359 (437)
..|+|++|+|.||++
T Consensus 152 ~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 152 QDLNGRPLRINWAAK 166 (166)
T ss_dssp CEETTEECEEEESCC
T ss_pred CccCCcEEEEEecCC
Confidence 999999999999863
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=8.1e-33 Score=231.62 Aligned_cols=162 Identities=27% Similarity=0.508 Sum_probs=146.6
Q ss_pred CCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 013716 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (437)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 185 (437)
+++|||+|||+++|+++|+++|+.||.|..+++++++.+|+++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 58999999999999999999999999999999999998899999999999999999999999999999999999987753
Q ss_pred cccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCeee
Q 013716 186 KNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTIS 265 (437)
Q Consensus 186 ~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~ 265 (437)
...
T Consensus 82 ~~~----------------------------------------------------------------------------- 84 (167)
T 1fxl_A 82 SSA----------------------------------------------------------------------------- 84 (167)
T ss_dssp CCG-----------------------------------------------------------------------------
T ss_pred Ccc-----------------------------------------------------------------------------
Confidence 210
Q ss_pred ecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCC-CC-ccEEEEEeCCHHHHHHHHHhcC
Q 013716 266 WADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTE 343 (437)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-~g~afV~f~~~~~A~~A~~~l~ 343 (437)
....++|||+|||..+++++|+++|++||.|..++++.+.. +. +|||||+|.+.++|.+|+..||
T Consensus 85 -------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 151 (167)
T 1fxl_A 85 -------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLN 151 (167)
T ss_dssp -------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred -------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhc
Confidence 01225899999999999999999999999999999988763 33 8999999999999999999999
Q ss_pred CceeCCeE--EEEEec
Q 013716 344 KYEIDGQV--LEVVLA 357 (437)
Q Consensus 344 g~~i~g~~--l~v~~a 357 (437)
|..|.|+. |+|.||
T Consensus 152 g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 152 GQKPSGATEPITVKFA 167 (167)
T ss_dssp TCCCTTCSSCCEEEEC
T ss_pred CCccCCCccceEEEeC
Confidence 99999965 888886
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.6e-32 Score=239.99 Aligned_cols=179 Identities=23% Similarity=0.426 Sum_probs=150.3
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
..++|||+|||+++|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 45899999999999999999999999999999999999889999999999999999999999999999999999997765
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCee
Q 013716 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (437)
Q Consensus 185 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (437)
..... ... .....
T Consensus 107 ~~~~~---------------------------------------------------~~~---~~~~~------------- 119 (216)
T 2qfj_A 107 NIGQA---------------------------------------------------QPI---IDQLA------------- 119 (216)
T ss_dssp CCGGG---------------------------------------------------HHH---HHHHH-------------
T ss_pred Ccccc---------------------------------------------------chh---hhhhh-------------
Confidence 32110 000 00000
Q ss_pred eecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCC-C-ccEEEEEeCCHHHHHHHHHhc
Q 013716 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDT 342 (437)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-~g~afV~f~~~~~A~~A~~~l 342 (437)
......++|||+|||..+++++|+++|++||.|..|+|+.+..+ . +|||||+|.+.++|.+|+..|
T Consensus 120 ------------~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l 187 (216)
T 2qfj_A 120 ------------EEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 187 (216)
T ss_dssp ------------HHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred ------------cccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHc
Confidence 00123369999999999999999999999999999999988543 3 899999999999999999999
Q ss_pred CCceeCCeEEEEEeccCCCC
Q 013716 343 EKYEIDGQVLEVVLAKPQTD 362 (437)
Q Consensus 343 ~g~~i~g~~l~v~~a~~~~~ 362 (437)
||..|+|++|+|.|+.++..
T Consensus 188 ~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 188 NLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp TTCBCSSSBCEEEECSSCSS
T ss_pred cCCEeCCcEEEEEEecCCCC
Confidence 99999999999999987643
No 9
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=2.9e-33 Score=234.33 Aligned_cols=163 Identities=25% Similarity=0.517 Sum_probs=144.4
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
++++|||+|||+++|+++|+++|+.||.|..|++++++.+|+++|||||+|.+.++|.+|++. +..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 468999999999999999999999999999999999998999999999999999999999973 567889888776553
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCee
Q 013716 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (437)
Q Consensus 185 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (437)
+...
T Consensus 80 ~~~~---------------------------------------------------------------------------- 83 (167)
T 2cjk_A 80 PRDE---------------------------------------------------------------------------- 83 (167)
T ss_dssp CHHH----------------------------------------------------------------------------
T ss_pred chhh----------------------------------------------------------------------------
Confidence 2100
Q ss_pred eecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCC-CC-ccEEEEEeCCHHHHHHHHHhc
Q 013716 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDT 342 (437)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-~g~afV~f~~~~~A~~A~~~l 342 (437)
....++|||+|||+.+++++|+++|++||.|..|.++.++. +. +|||||+|.+.++|.+|+. +
T Consensus 84 --------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~ 148 (167)
T 2cjk_A 84 --------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-N 148 (167)
T ss_dssp --------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-C
T ss_pred --------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-C
Confidence 01125899999999999999999999999999999998864 33 9999999999999999998 8
Q ss_pred CCceeCCeEEEEEeccCC
Q 013716 343 EKYEIDGQVLEVVLAKPQ 360 (437)
Q Consensus 343 ~g~~i~g~~l~v~~a~~~ 360 (437)
++..|+|++|+|.||.++
T Consensus 149 ~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 149 KFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp SEECSSSSCEEEEECCCC
T ss_pred CCEEeCCeEEEEeecCCC
Confidence 999999999999999875
No 10
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=2e-32 Score=231.11 Aligned_cols=165 Identities=25% Similarity=0.492 Sum_probs=142.6
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCC--CcccEEEEEecCHHHHHHHHHHhCCCccC---CeEEE
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESG--ESKGFAFVSFRSKEFAKKAIDELHSKELK---GKTIR 179 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~--~~~g~afV~f~~~~~A~~a~~~l~~~~~~---g~~i~ 179 (437)
++++|||+|||+++|+++|+++|++||.|..|++++++.++ +++|||||+|.+.++|.+|++.|++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46899999999999999999999999999999999998876 89999999999999999999999987765 34444
Q ss_pred EeeccccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCC
Q 013716 180 CSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDG 259 (437)
Q Consensus 180 v~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~ 259 (437)
+.++.....
T Consensus 82 ~~~~~~~~~----------------------------------------------------------------------- 90 (175)
T 3nmr_A 82 MKPADSEKN----------------------------------------------------------------------- 90 (175)
T ss_dssp EEECGGGCC-----------------------------------------------------------------------
T ss_pred Ecccccccc-----------------------------------------------------------------------
Confidence 433321100
Q ss_pred CCCeeeecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHH
Q 013716 260 NTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKA 338 (437)
Q Consensus 260 ~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A 338 (437)
.....++|||+|||+.+|+++|+++|++||.|..|.++++..+. +|||||+|.+.++|.+|
T Consensus 91 ------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A 152 (175)
T 3nmr_A 91 ------------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTA 152 (175)
T ss_dssp ------------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHH
T ss_pred ------------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHH
Confidence 00233689999999999999999999999999999999887777 99999999999999999
Q ss_pred HHhcCCceeC---CeEEEEEecc
Q 013716 339 VKDTEKYEID---GQVLEVVLAK 358 (437)
Q Consensus 339 ~~~l~g~~i~---g~~l~v~~a~ 358 (437)
+..|||..+. +++|+|.||.
T Consensus 153 ~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 153 IKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HHHHTTSCCCTTCSSCCEEEECC
T ss_pred HHHhcCCcccCCCCCCeEEEecC
Confidence 9999998776 4999999983
No 11
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.98 E-value=8.9e-31 Score=224.74 Aligned_cols=195 Identities=21% Similarity=0.285 Sum_probs=144.6
Q ss_pred CCCeEEEcCCC-cCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 105 NGSEVFIGGLP-KDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 105 ~~~~l~v~nLp-~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
.+++|||+||| +.+|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+|++.||+..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 57899999999 89999999999999999999999865 3799999999999999999999999999999999998
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCe
Q 013716 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (437)
Q Consensus 184 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 263 (437)
+.... .|..... + .-+. ... ++... ..... |.....+
T Consensus 78 ~~~~~-----~p~~~~~--~-----~~~~-~~~----~~~~~-~~~~r-----~~~~~~~-------------------- 114 (205)
T 3tyt_A 78 KQPAI-----MPGQSYG--L-----EDGS-CSY----KDFSE-SRNNR-----FSTPEQA-------------------- 114 (205)
T ss_dssp SCSCC-----CCCSCCB--C-----TTSC-BSE----EECTT-CTTCS-----CSSHHHH--------------------
T ss_pred cCCcc-----CCCcccc--c-----ccCC-ccc----cccCC-Ccccc-----ccCcccc--------------------
Confidence 75432 1110000 0 0000 000 00000 00000 0000000
Q ss_pred eeecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCe--eEEEeCCCCCCCccEEEEEeCCHHHHHHHHHh
Q 013716 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEV--TKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (437)
Q Consensus 264 v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v--~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~ 341 (437)
.. .....+.++|||+|||+.+|+++|+++|++||.| ..|+++.++..++|||||+|.+.++|.+||..
T Consensus 115 ----~~------~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~ 184 (205)
T 3tyt_A 115 ----AK------NRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGF 184 (205)
T ss_dssp ----TT------SCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHH
T ss_pred ----cc------cccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHH
Confidence 00 0001345789999999999999999999999999 89999988754479999999999999999999
Q ss_pred cCCceeCCe----EEEEEec
Q 013716 342 TEKYEIDGQ----VLEVVLA 357 (437)
Q Consensus 342 l~g~~i~g~----~l~v~~a 357 (437)
|||..|.|+ ++.|.||
T Consensus 185 lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 185 LNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HTTCEECCSSSSSCEECEEE
T ss_pred hCCCCccCCCCCcceEEEec
Confidence 999999986 6777665
No 12
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=2.1e-30 Score=235.83 Aligned_cols=248 Identities=16% Similarity=0.234 Sum_probs=152.1
Q ss_pred CCCCCeEEEcCCCcCCCHHHHH----HhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 013716 103 PPNGSEVFIGGLPKDASEEDLR----DLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~----~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 178 (437)
.+..++|||+|||+++|+++|+ ++|++||.|..|++++ +++++|||||+|.+.++|.+|++.||+..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4567899999999999999977 8999999999999886 58899999999999999999999999999999999
Q ss_pred EEeeccccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEe----cChHH-HHHHHHHHhcc
Q 013716 179 RCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLY----YNNAC-ADYSRQKMLNA 253 (437)
Q Consensus 179 ~v~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f----~~~~~-a~~a~~~~~~~ 253 (437)
+|.++............... +......-..... ...................+.+.- ..... +......+.+.
T Consensus 83 ~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 83 RIQYAKTDSDIIAKMKGTFV-ERDRKREKRKPKS-QETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEeccCcchhhhhcCCcc-cchhhhhhhhccc-cchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 99999765432221111110 0000000000000 000000000000000000000000 00000 00000000000
Q ss_pred Cccc--CCC----C-CeeeecCCC---------C--CCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeC
Q 013716 254 NFKL--DGN----T-PTISWADPK---------S--TPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMP 315 (437)
Q Consensus 254 ~~~~--~~~----~-~~v~~~~~~---------~--~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~ 315 (437)
.... .+. . ....+.... . ...........++|||+|||..+++++|+++|++||.|..|+|.
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~ 240 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe
Confidence 0000 000 0 000000000 0 00000122346889999999999999999999999999999998
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHhcCCceeC-CeEEEEEecc
Q 013716 316 PGKSGKRDFGFIHYAERSSALKAVKDTEKYEID-GQVLEVVLAK 358 (437)
Q Consensus 316 ~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~-g~~l~v~~a~ 358 (437)
.++ +|||||+|.+.++|.+|+..|||..|. |+.|+|.|++
T Consensus 241 ~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 241 PGR---HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred cCC---CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 655 589999999999999999999999999 9999999986
No 13
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=7.8e-32 Score=227.36 Aligned_cols=166 Identities=21% Similarity=0.353 Sum_probs=141.3
Q ss_pred CCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEe
Q 013716 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (437)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 181 (437)
.+...++|||+|||+++|+++|+++|..||.|.. .++.+..+++++|||||+|.+.++|.+|+ .|++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 3456789999999999999999999999997766 33445556899999999999999999999 599999999999998
Q ss_pred eccccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCC
Q 013716 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (437)
Q Consensus 182 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 261 (437)
++.+...
T Consensus 87 ~~~~~~~------------------------------------------------------------------------- 93 (175)
T 1fje_B 87 KPKGRDS------------------------------------------------------------------------- 93 (175)
T ss_dssp CCCCSSC-------------------------------------------------------------------------
T ss_pred cCCCccc-------------------------------------------------------------------------
Confidence 8764311
Q ss_pred CeeeecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHh
Q 013716 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (437)
Q Consensus 262 ~~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~ 341 (437)
......++|||+|||..+++++|+++|++||.|..+ ......+|||||+|.+.++|.+|+..
T Consensus 94 ---------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 1fje_B 94 ---------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEE 155 (175)
T ss_dssp ---------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---CSSSSCCSEEEEECSSHHHHHHHHHH
T ss_pred ---------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---cCCCCCceEEEEEECCHHHHHHHHHH
Confidence 000223699999999999999999999999988877 22222389999999999999999999
Q ss_pred cCCceeCCeEEEEEeccCC
Q 013716 342 TEKYEIDGQVLEVVLAKPQ 360 (437)
Q Consensus 342 l~g~~i~g~~l~v~~a~~~ 360 (437)
|||+.|.|++|+|.|+.++
T Consensus 156 l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 156 KQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp HTEEEETTEEEEEEECSSC
T ss_pred hCCCEECCeEEEEEecCCC
Confidence 9999999999999999865
No 14
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.97 E-value=1.2e-30 Score=224.87 Aligned_cols=181 Identities=18% Similarity=0.354 Sum_probs=144.6
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhccc----C-------CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCcc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPI----G-------DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL 173 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~----G-------~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~ 173 (437)
.+++|||+|||+++|+++|+++|+.| | .|..+.+ ++++|||||+|.+.++|.+|+ .|++..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 56899999999999999999999999 5 5666665 567899999999999999999 8999999
Q ss_pred CCeEEEEeeccccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhcc
Q 013716 174 KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253 (437)
Q Consensus 174 ~g~~i~v~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 253 (437)
.|+.|.|.++.......-. . ...
T Consensus 76 ~g~~i~v~~~~~~~~~~~~-----------------------------~----~~~------------------------ 98 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGM-----------------------------S----ENP------------------------ 98 (198)
T ss_dssp TTEEEEEECCCCCCCCCCS-----------------------------S----SCS------------------------
T ss_pred cCceEEEeCCCCCCCCCCC-----------------------------c----CCC------------------------
Confidence 9999999987654221000 0 000
Q ss_pred CcccCCCCCeeeecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCC-CCC-ccEEEEEeCC
Q 013716 254 NFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGK-RDFGFIHYAE 331 (437)
Q Consensus 254 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~-~~~-~g~afV~f~~ 331 (437)
.....+. .........++|||+|||+.+++++|+++|++||.|..|++..++ .+. +|||||+|.+
T Consensus 99 ~~~~~~~-------------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~ 165 (198)
T 2yh0_A 99 SVYVPGV-------------VSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD 165 (198)
T ss_dssp SCCCTTS-------------SCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESS
T ss_pred cCCCCCC-------------ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECC
Confidence 0000000 000111345799999999999999999999999999999999886 344 9999999999
Q ss_pred HHHHHHHHHhcCCceeCCeEEEEEeccCCCC
Q 013716 332 RSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (437)
Q Consensus 332 ~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~ 362 (437)
.++|.+|+..|||..|+|+.|+|.|+.++..
T Consensus 166 ~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 166 INVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp SSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred HHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 9999999999999999999999999987644
No 15
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.97 E-value=6e-31 Score=221.31 Aligned_cols=157 Identities=19% Similarity=0.418 Sum_probs=138.7
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhccc----C-------CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCcc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPI----G-------DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL 173 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~----G-------~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~ 173 (437)
+.++|||+|||+++|+++|+++|++| | .|..+++ ++++|||||+|.+.++|.+|+ .|++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE------ETTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe------cCCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 7777776 456899999999999999999 8999999
Q ss_pred CCeEEEEeeccccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhcc
Q 013716 174 KGKTIRCSLSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253 (437)
Q Consensus 174 ~g~~i~v~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 253 (437)
.|+.|.|.++..... .
T Consensus 76 ~g~~i~v~~~~~~~~----------------------------------------~------------------------ 91 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQP----------------------------------------L------------------------ 91 (172)
T ss_dssp TTEECEEECCSSCCC----------------------------------------C------------------------
T ss_pred cCceeeecCCcccCC----------------------------------------C------------------------
Confidence 999999876542210 0
Q ss_pred CcccCCCCCeeeecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCC-CCC-ccEEEEEeCC
Q 013716 254 NFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGK-RDFGFIHYAE 331 (437)
Q Consensus 254 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~-~~~-~g~afV~f~~ 331 (437)
...++|||+|||..+++++|+++|++||.|..|.+..++ .+. +|||||+|.+
T Consensus 92 --------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~ 145 (172)
T 2g4b_A 92 --------------------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVD 145 (172)
T ss_dssp --------------------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESS
T ss_pred --------------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCC
Confidence 013689999999999999999999999999999999886 344 9999999999
Q ss_pred HHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 332 RSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 332 ~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
.++|.+|+..|||..|+|++|+|.||.
T Consensus 146 ~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 146 INVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred HHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 999999999999999999999999983
No 16
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=3.4e-30 Score=226.52 Aligned_cols=195 Identities=24% Similarity=0.346 Sum_probs=148.2
Q ss_pred CCCCCeEEEcCCCc-CCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEe
Q 013716 103 PPNGSEVFIGGLPK-DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (437)
Q Consensus 103 ~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 181 (437)
.+..++|||+|||+ .+|+++|+++|+.||.|..|+|++++ +|||||+|.+.++|.+|++.|++..|.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 35678999999999 99999999999999999999998864 7899999999999999999999999999999999
Q ss_pred eccccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCC
Q 013716 182 LSETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNT 261 (437)
Q Consensus 182 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~ 261 (437)
++....... +..... ..... -.|.. ... .
T Consensus 106 ~a~~~~~~~----~~~~~~------------------------~~~~~-----~~~~~-------------~~~---~-- 134 (229)
T 2adc_A 106 LSKHQNVQL----PREGQE------------------------DQGLT-----KDYGN-------------SPL---H-- 134 (229)
T ss_dssp CCSCCCCCC----CCSSSS------------------------TTTTE-----EECTT-------------CSS---C--
T ss_pred EecCccccC----cccccc------------------------ccccc-----ccccc-------------Ccc---c--
Confidence 987543211 110000 00000 00000 000 0
Q ss_pred CeeeecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccC-CeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHH
Q 013716 262 PTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340 (437)
Q Consensus 262 ~~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G-~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~ 340 (437)
.+..+. .........+.++|||+|||..+++++|+++|++|| .|..|++++.. +|||||+|.+.++|.+|+.
T Consensus 135 ---~~~~~~-~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~---~g~afV~f~~~~~A~~Ai~ 207 (229)
T 2adc_A 135 ---RFKKPG-SKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---RKMALIQMGSVEEAVQALI 207 (229)
T ss_dssp ---CCCSTT-SGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS---TTCEEEEESSHHHHHHHHH
T ss_pred ---ccCCcc-ccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC---CcEEEEEECCHHHHHHHHH
Confidence 000000 000011123458999999999999999999999999 99999996632 5899999999999999999
Q ss_pred hcCCceeC-CeEEEEEeccCC
Q 013716 341 DTEKYEID-GQVLEVVLAKPQ 360 (437)
Q Consensus 341 ~l~g~~i~-g~~l~v~~a~~~ 360 (437)
.|||..|. |++|+|.|++++
T Consensus 208 ~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 208 DLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp HHTTCBSSSSCBCEEEECSSC
T ss_pred HHCCCccCCCCeEEEEEecCC
Confidence 99999999 999999999864
No 17
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=4e-30 Score=221.35 Aligned_cols=192 Identities=24% Similarity=0.355 Sum_probs=147.1
Q ss_pred CCeEEEcCCCc-CCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 106 GSEVFIGGLPK-DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 106 ~~~l~v~nLp~-~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
+++|||+|||+ .+|+++|+++|++||.|..|++++++ +|||||+|.+.++|.+|+..|++..+.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 58999999999 99999999999999999999998764 7899999999999999999999999999999999987
Q ss_pred ccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCee
Q 013716 185 TKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTI 264 (437)
Q Consensus 185 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v 264 (437)
..... ++.... ...+..+. |.. . . ..+
T Consensus 78 ~~~~~----~~~~~~------------------------~~~~~~~~-----~~~-------------~--~-~~r---- 104 (198)
T 1qm9_A 78 HQNVQ----LPREGQ------------------------EDQGLTKD-----YGN-------------S--P-LHR---- 104 (198)
T ss_dssp CCSCC----CSSSSS------------------------SSSSCEEE-----SSC-------------C--C-TTS----
T ss_pred CCCcC----CCCcCC------------------------cccccccc-----ccC-------------C--c-hhh----
Confidence 65321 111000 00000000 000 0 0 000
Q ss_pred eecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccC-CeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcC
Q 013716 265 SWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343 (437)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G-~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 343 (437)
+..+. .........+.++|||+|||..+++++|+++|++|| .|..|++.++. +|||||+|.+.++|.+|+..||
T Consensus 105 -~~~~~-~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~---~g~afV~f~~~~~A~~A~~~l~ 179 (198)
T 1qm9_A 105 -FKKPG-SKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD---RKMALIQMGSVEEAVQALIDLH 179 (198)
T ss_dssp -SSSCC-CCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT---SSCEEEECSSHHHHHHHHHHHT
T ss_pred -ccCcc-ccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC---CcEEEEEeCCHHHHHHHHHHhc
Confidence 00000 000011123468999999999999999999999999 99999997643 5899999999999999999999
Q ss_pred CceeC-CeEEEEEeccCC
Q 013716 344 KYEID-GQVLEVVLAKPQ 360 (437)
Q Consensus 344 g~~i~-g~~l~v~~a~~~ 360 (437)
|..|+ |++|+|.|++++
T Consensus 180 g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 180 NHDLGENHHLRVSFSKST 197 (198)
T ss_dssp SSCCSSCCSCCEEEECCC
T ss_pred CCccCCCCeEEEEeeccc
Confidence 99999 999999999764
No 18
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=1.4e-29 Score=227.09 Aligned_cols=158 Identities=28% Similarity=0.441 Sum_probs=141.5
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
...++|||+|||+++|+++|+++|+.||.|..|++.+ ++|||||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 93 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFA 93 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeec
Confidence 4568999999999999999999999999999999953 4789999999999999999999999999999988776
Q ss_pred cccccccccCCCCCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCe
Q 013716 184 ETKNRLFIGNVPKNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPT 263 (437)
Q Consensus 184 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~ 263 (437)
.+
T Consensus 94 ~~------------------------------------------------------------------------------ 95 (261)
T 3sde_A 94 TH------------------------------------------------------------------------------ 95 (261)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 31
Q ss_pred eeecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhc
Q 013716 264 ISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDT 342 (437)
Q Consensus 264 v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l 342 (437)
.++|||+|||+.+|+++|+++|+.||.|..|.|+.+..+. +|||||+|.+.++|.+|+..|
T Consensus 96 ------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 96 ------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp ------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred ------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 1479999999999999999999999999999999887666 999999999999999999999
Q ss_pred C-CceeC---CeEEEEEeccCCCCC
Q 013716 343 E-KYEID---GQVLEVVLAKPQTDK 363 (437)
Q Consensus 343 ~-g~~i~---g~~l~v~~a~~~~~~ 363 (437)
| +..+. +++|.|.++.+....
T Consensus 158 ~~~~~~~~~~~r~i~v~~~~~~~~~ 182 (261)
T 3sde_A 158 GDGAFLLTTTPRPVIVEPMEQFDDE 182 (261)
T ss_dssp HHSCEESSSSCCBCEEEECCCEESS
T ss_pred cCCeEEecCCCceEEEeeccccCcc
Confidence 5 55554 999999999876443
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.95 E-value=3.1e-27 Score=215.13 Aligned_cols=164 Identities=20% Similarity=0.390 Sum_probs=152.7
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
+..++|||+|||+.+|+++|+++|+.||.|..++++.+..+|+++|||||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 45689999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred ccc---------ccccccCCCCCC-CHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhcc
Q 013716 184 ETK---------NRLFIGNVPKNW-TEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNA 253 (437)
Q Consensus 184 ~~~---------~~l~v~nl~~~~-~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~ 253 (437)
.++ ++|||+|||..+ ++++|+++|+.||. |..+.++.++ .+.++|+|||.|.+.++|.+|+..|++.
T Consensus 173 ~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~-i~~v~i~~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~ 249 (284)
T 3smz_A 173 DAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHS-PTFCQLACGQ--DGQLKGFAVLEYETAEMAEEAQQQADGL 249 (284)
T ss_dssp CGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSC-CSEEEEEECS--SCCEEEEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCC-eEEEEEEECC--CCCcccEEEEEeCCHHHHHHHHHHhCCC
Confidence 754 579999999995 99999999999998 9999999984 6888999999999999999999999876
Q ss_pred CcccCCCCCeeeecCCCCC
Q 013716 254 NFKLDGNTPTISWADPKST 272 (437)
Q Consensus 254 ~~~~~~~~~~v~~~~~~~~ 272 (437)
.+.|+.+.|.|+.+...
T Consensus 250 --~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 250 --SLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp --EETTEECEEEECCSSSC
T ss_pred --ccCCeEEEEEEecCCCc
Confidence 56899999999988754
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=6.2e-27 Score=214.03 Aligned_cols=161 Identities=23% Similarity=0.394 Sum_probs=141.4
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccC-CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
..++|||+|||+.+|+++|+++|+.|| .|..|+++++.. +.++|||||+|.+.++|.+|+..|++..+.|+.|.|.++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 678999999999999999999999999 999999998876 889999999999999999999999999999999999987
Q ss_pred ccc-------------ccccccCCCCC-CCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHH
Q 013716 184 ETK-------------NRLFIGNVPKN-WTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQK 249 (437)
Q Consensus 184 ~~~-------------~~l~v~nl~~~-~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~ 249 (437)
.+. ++|||+|||.. +++++|+++|+.||. |..+.+++++..++.++|||||.|.+.++|.+|+ .
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~-v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~ 272 (292)
T 2ghp_A 195 NPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGS-IEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-Q 272 (292)
T ss_dssp CCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSC-EEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-G
T ss_pred CCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCC-eeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-H
Confidence 642 67999999999 999999999999998 9999999985445899999999999999999999 8
Q ss_pred HhccCcccCCCCCeeeecCCC
Q 013716 250 MLNANFKLDGNTPTISWADPK 270 (437)
Q Consensus 250 ~~~~~~~~~~~~~~v~~~~~~ 270 (437)
|++. .+.|+.+.|.|+.++
T Consensus 273 l~g~--~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 273 MNRS--LLGNREISVSLADKK 291 (292)
T ss_dssp GTTE--EETTEEEEEEECCCC
T ss_pred hcCC--EECCcEEEEEEecCC
Confidence 8775 678999999999875
No 21
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.90 E-value=2.3e-22 Score=165.82 Aligned_cols=144 Identities=22% Similarity=0.342 Sum_probs=112.3
Q ss_pred EEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccC-----cccCCCCCeeeecCCCCCCCCcccccCcceEEEecCC
Q 013716 217 IELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNAN-----FKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIP 291 (437)
Q Consensus 217 ~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nLp 291 (437)
+.++.+ ..+++||+||+|.+...|.+|+..+++.. ....+.......................++|||+|||
T Consensus 3 ~kl~ln---~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 3 YKLILN---GKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEE---CSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred EEEEec---CccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 445544 23689999999999999999998877532 2223333333333333322223333556899999999
Q ss_pred CCCCHHHHHHHHhccCCeeEEEeCCCCC-CC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCCCCC
Q 013716 292 DNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363 (437)
Q Consensus 292 ~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~~ 363 (437)
+.+++++|+++|++||.|..|+|+.++. +. +|||||+|.+.++|.+|+..|||+.|.|++|+|.|++++..+
T Consensus 80 ~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp TTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred CCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 9999999999999999999999999864 33 999999999999999999999999999999999999876443
No 22
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=1.5e-22 Score=156.91 Aligned_cols=95 Identities=23% Similarity=0.457 Sum_probs=74.3
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
..++|||+|||+++|+++|+++|++||.|.+|+|+++. +.++|||||+|.+.++|.+||+.|++..|.|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45789999999999999999999999999999999986 5589999999999999999999999999999999999876
Q ss_pred cc--------------ccccccCCCCCCCHH
Q 013716 185 TK--------------NRLFIGNVPKNWTED 201 (437)
Q Consensus 185 ~~--------------~~l~v~nl~~~~~~~ 201 (437)
++ ++|||+|||+.+|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 82 SRKEREAELGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp CCCC---------------------------
T ss_pred CccccccccccccCCCCceEeCCCCCCcccc
Confidence 53 469999999998876
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=6.2e-22 Score=148.57 Aligned_cols=82 Identities=32% Similarity=0.605 Sum_probs=79.2
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
-.+++|||+|||+++|+++|+++|++||.|..|+|++++.+|+++|||||+|.+.++|.+|++.||+..|.|++|+|.++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 013716 184 ET 185 (437)
Q Consensus 184 ~~ 185 (437)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 76
No 24
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.85 E-value=1.2e-20 Score=153.98 Aligned_cols=129 Identities=18% Similarity=0.219 Sum_probs=109.1
Q ss_pred CCCccEEEEEecChHHHHHHHHHH-hccCcccCCCCCeeeecCCCC----------CCCCcccccCcceEEEecCCCCCC
Q 013716 227 SRNRGFSFVLYYNNACADYSRQKM-LNANFKLDGNTPTISWADPKS----------TPDHSAAASQVKALYVKNIPDNTS 295 (437)
Q Consensus 227 ~~~~g~~fv~f~~~~~a~~a~~~~-~~~~~~~~~~~~~v~~~~~~~----------~~~~~~~~~~~~~l~V~nLp~~~t 295 (437)
..-+|+++++|.+.+.|.+|+..+ ++. .+.| .+.+.++.... ...........++|||+|||+.++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~--~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t 86 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDN--GVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGN 86 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHH--TCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCC--CCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCC
Confidence 456889999999999999999998 665 5667 78888776521 111122334568999999999999
Q ss_pred HHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCCC
Q 013716 296 TEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (437)
Q Consensus 296 ~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 361 (437)
+++|+++|++||.|..|+|+.+ ++|||||+|.+.++|.+|+..|||..|.|++|+|.|++++.
T Consensus 87 ~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 87 KTELERAFGYYGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CHHHHHHHHHHSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred HHHHHHHHHhhCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999999999999999999987 36999999999999999999999999999999999998753
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.84 E-value=6.8e-21 Score=142.89 Aligned_cols=80 Identities=24% Similarity=0.463 Sum_probs=74.6
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
.++++|||+|||+.+|+++|+++|++||.|..|+|++++.+. +|||||+|.+.++|.+|+..|||..|.|++|+|.||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 345789999999999999999999999999999999877643 999999999999999999999999999999999999
Q ss_pred cC
Q 013716 358 KP 359 (437)
Q Consensus 358 ~~ 359 (437)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 76
No 26
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=2.5e-20 Score=142.55 Aligned_cols=84 Identities=27% Similarity=0.370 Sum_probs=80.0
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
+++.++|||+|||+.+|+++|+++|++||.|..|+|++++.|++++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 013716 183 SETK 186 (437)
Q Consensus 183 ~~~~ 186 (437)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8754
No 27
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.83 E-value=9.3e-22 Score=171.22 Aligned_cols=80 Identities=21% Similarity=0.282 Sum_probs=73.6
Q ss_pred cceEEEecCCCCCCHHHHHHHHhccC--CeeEEEeCCCCCC-C-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 282 VKALYVKNIPDNTSTEKIKELFQRHG--EVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 282 ~~~l~V~nLp~~~t~~~L~~~f~~~G--~v~~v~i~~~~~~-~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
.++|||+|||+.+|+++|+++|++|| .|..|+|+.++.+ + ||||||+|.+.++|.+||..||++.|.|+.|+|.++
T Consensus 68 ~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a 147 (229)
T 3q2s_C 68 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPV 147 (229)
T ss_dssp -CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEEC
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEEC
Confidence 36899999999999999999999999 9999999988644 3 999999999999999999999999999999999999
Q ss_pred cCCC
Q 013716 358 KPQT 361 (437)
Q Consensus 358 ~~~~ 361 (437)
++..
T Consensus 148 ~~~~ 151 (229)
T 3q2s_C 148 NKQF 151 (229)
T ss_dssp CHHH
T ss_pred CCCc
Confidence 7543
No 28
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.83 E-value=5e-21 Score=141.40 Aligned_cols=83 Identities=34% Similarity=0.551 Sum_probs=76.6
Q ss_pred CCeEEEcCCCcCCCHHHHHHhhcccC-CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC-CCccCCeEEEEeec
Q 013716 106 GSEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH-SKELKGKTIRCSLS 183 (437)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~-~~~~~g~~i~v~~~ 183 (437)
+++|||+|||+++|+++|+++|++|| .|.+|+|++++.+++++|||||+|.+.++|.+|++.++ +..+.|++|+|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999999999999999999999999999998774 56799999999999
Q ss_pred ccccc
Q 013716 184 ETKNR 188 (437)
Q Consensus 184 ~~~~~ 188 (437)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87643
No 29
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=1.5e-20 Score=139.08 Aligned_cols=80 Identities=25% Similarity=0.445 Sum_probs=74.9
Q ss_pred CCeEEEcCCCcCCCHHHHHHhhcccCC--eEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCC----ccCCeEEE
Q 013716 106 GSEVFIGGLPKDASEEDLRDLCEPIGD--VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK----ELKGKTIR 179 (437)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~--i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~----~~~g~~i~ 179 (437)
=.||||+|||+.+|+++|+++|++||. |.+|++++++.||+++|||||+|.+.++|.+|++.||+. .+.||+|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 368999999999999999999999995 679999999999999999999999999999999999997 48999999
Q ss_pred Eeeccc
Q 013716 180 CSLSET 185 (437)
Q Consensus 180 v~~~~~ 185 (437)
|.+++.
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999874
No 30
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.81 E-value=4.6e-20 Score=136.20 Aligned_cols=80 Identities=20% Similarity=0.437 Sum_probs=72.9
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccC-CeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcC-CceeCCeEEEEEecc
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTE-KYEIDGQVLEVVLAK 358 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G-~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~-g~~i~g~~l~v~~a~ 358 (437)
++|||+|||+.+|+++|+++|++|| .|..|+|++++.+. ||||||+|.+.++|.+|+..++ +..|+|++|+|.||.
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999999999 79999999887644 9999999999999999999874 568999999999998
Q ss_pred CCCC
Q 013716 359 PQTD 362 (437)
Q Consensus 359 ~~~~ 362 (437)
++..
T Consensus 82 ~~~~ 85 (91)
T 2lxi_A 82 PKPK 85 (91)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7654
No 31
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.9e-19 Score=134.49 Aligned_cols=84 Identities=21% Similarity=0.345 Sum_probs=78.3
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
...++|||+|||+.+++++|+++|++||.|..|+|+.++.+++|||||+|.+.++|.+|+..||+..|.|+.|+|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 45589999999999999999999999999999999998776799999999999999999999999999999999999987
Q ss_pred CCCC
Q 013716 360 QTDK 363 (437)
Q Consensus 360 ~~~~ 363 (437)
+..+
T Consensus 93 ~~~~ 96 (103)
T 2cqi_A 93 PSSQ 96 (103)
T ss_dssp TTCC
T ss_pred Cccc
Confidence 6544
No 32
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.81 E-value=1.4e-19 Score=132.30 Aligned_cols=82 Identities=33% Similarity=0.601 Sum_probs=78.3
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
..+.++|||+|||+++|+++|+++|++||.|..|++++++.+++++|||||+|.+.++|.+|++.||+..+.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45779999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred cc
Q 013716 183 SE 184 (437)
Q Consensus 183 ~~ 184 (437)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 33
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.81 E-value=4.4e-20 Score=175.77 Aligned_cols=83 Identities=24% Similarity=0.407 Sum_probs=75.9
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+|+++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+||..|||..|.|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 345799999999999999999999999999999999886433 899999999999999999999999999999999999
Q ss_pred cCCCC
Q 013716 358 KPQTD 362 (437)
Q Consensus 358 ~~~~~ 362 (437)
.+...
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 86544
No 34
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=132.58 Aligned_cols=83 Identities=31% Similarity=0.525 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
.+.++|||+|||..+|+++|+++|++||.|..|++++++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 35689999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred ccc
Q 013716 184 ETK 186 (437)
Q Consensus 184 ~~~ 186 (437)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 753
No 35
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.81 E-value=8.7e-20 Score=141.27 Aligned_cols=80 Identities=15% Similarity=0.391 Sum_probs=75.3
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCCCC
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~ 362 (437)
.+|||+|||+.+++++|+++|++||.|..|+|+.++.++||||||+|.+.++|.+||..|||+.|.|++|+|.++.++..
T Consensus 6 ~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~ 85 (115)
T 4f25_A 6 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKE 85 (115)
T ss_dssp CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC
T ss_pred CEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCccc
Confidence 58999999999999999999999999999999988766699999999999999999999999999999999999987654
No 36
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.81 E-value=7.7e-20 Score=141.98 Aligned_cols=105 Identities=19% Similarity=0.331 Sum_probs=95.9
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
+...++|||+|||+.+|+++|+++|+.||.|..|+++.+ +.++|||||+|.+.++|.+|+..||+..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 456789999999999999999999999999999999876 55699999999999999999999999999999999999
Q ss_pred ccccccccccCCCCCCCHHHHHHHHHhhCC
Q 013716 183 SETKNRLFIGNVPKNWTEDEFRKVIEDVGP 212 (437)
Q Consensus 183 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~ 212 (437)
+.+.... .+++...+++++.++|+.||.
T Consensus 82 a~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRAF--QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHHT--TTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChhh--hhhhHhHhHHHHHHHHHHhCC
Confidence 9876543 678888899999999999994
No 37
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.80 E-value=2.8e-19 Score=130.14 Aligned_cols=80 Identities=28% Similarity=0.552 Sum_probs=77.4
Q ss_pred CeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecccc
Q 013716 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (437)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~ 186 (437)
++|||+|||+++|+++|+++|++||.|..+++++++.+++++|||||+|.+.++|.+|+..|++..+.|+.|+|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999889999999999999999999999999999999999999999865
No 38
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=2.6e-19 Score=133.87 Aligned_cols=84 Identities=32% Similarity=0.649 Sum_probs=80.1
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
...++|||+|||+.+|+++|+++|++||.|..|++++++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 013716 184 ETKN 187 (437)
Q Consensus 184 ~~~~ 187 (437)
.++.
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 8653
No 39
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-18 Score=132.56 Aligned_cols=84 Identities=24% Similarity=0.396 Sum_probs=78.3
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
...++|||+|||+.+++++|+++|++||.|..|+|+.++.+.+|||||+|.+.++|.+|+..||++.|.|+.|+|.|+.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 45689999999999999999999999999999999988776799999999999999999999999999999999999987
Q ss_pred CCCC
Q 013716 360 QTDK 363 (437)
Q Consensus 360 ~~~~ 363 (437)
+...
T Consensus 93 ~~~~ 96 (103)
T 2cq3_A 93 RVMT 96 (103)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7554
No 40
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=1.6e-19 Score=135.20 Aligned_cols=86 Identities=31% Similarity=0.638 Sum_probs=81.0
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
++++|||+|||..+|+++|+++|++||.|..|+++.++.+|+++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 35899999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred cccccc
Q 013716 185 TKNRLF 190 (437)
Q Consensus 185 ~~~~l~ 190 (437)
++....
T Consensus 81 ~~~~~~ 86 (96)
T 2x1f_A 81 NSDISG 86 (96)
T ss_dssp CSSGGG
T ss_pred CCCCCC
Confidence 776543
No 41
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3.4e-19 Score=132.97 Aligned_cols=82 Identities=33% Similarity=0.585 Sum_probs=78.2
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
++..++|||+|||+.+|+++|+++|++||.|..|++++++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 92 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASI 92 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEe
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cc
Q 013716 183 SE 184 (437)
Q Consensus 183 ~~ 184 (437)
++
T Consensus 93 ak 94 (94)
T 2e5h_A 93 AI 94 (94)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 42
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3e-19 Score=134.61 Aligned_cols=86 Identities=30% Similarity=0.444 Sum_probs=81.2
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred cccccc
Q 013716 183 SETKNR 188 (437)
Q Consensus 183 ~~~~~~ 188 (437)
+.++..
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987644
No 43
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.80 E-value=1.3e-18 Score=134.92 Aligned_cols=84 Identities=19% Similarity=0.357 Sum_probs=77.1
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCC-CC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+++|+.||.|..|+|+.++. +. +|||||+|.+.++|.+||..|||+.|.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 4568999999999999999999999999999999998864 34 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 013716 358 KPQTDK 363 (437)
Q Consensus 358 ~~~~~~ 363 (437)
+++...
T Consensus 93 ~~~~~~ 98 (115)
T 2dgo_A 93 TRKPPA 98 (115)
T ss_dssp SCCCCC
T ss_pred cCCCCC
Confidence 877554
No 44
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.4e-19 Score=135.33 Aligned_cols=84 Identities=30% Similarity=0.519 Sum_probs=79.9
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
...++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 46689999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred cccc
Q 013716 184 ETKN 187 (437)
Q Consensus 184 ~~~~ 187 (437)
.++.
T Consensus 93 ~~~~ 96 (103)
T 2cq0_A 93 KPST 96 (103)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8653
No 45
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-18 Score=131.50 Aligned_cols=84 Identities=23% Similarity=0.419 Sum_probs=77.0
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCC-CC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+..|||..|.|++|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3457999999999999999999999999999999998873 33 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 013716 358 KPQTDK 363 (437)
Q Consensus 358 ~~~~~~ 363 (437)
.++..+
T Consensus 86 ~~~~~~ 91 (99)
T 1whw_A 86 TIKKEA 91 (99)
T ss_dssp CCCSTT
T ss_pred CCCccc
Confidence 877554
No 46
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.8e-19 Score=131.59 Aligned_cols=82 Identities=24% Similarity=0.346 Sum_probs=76.4
Q ss_pred cCcceEEEecCCCCCCHHHHH----HHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013716 280 SQVKALYVKNIPDNTSTEKIK----ELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~----~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 355 (437)
...++|||+|||+.+++++|+ ++|++||.|..|+|+.++.+ +|||||+|.+.++|.+|+..|||..|.|++|+|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345799999999999999999 99999999999999998877 8999999999999999999999999999999999
Q ss_pred eccCCCC
Q 013716 356 LAKPQTD 362 (437)
Q Consensus 356 ~a~~~~~ 362 (437)
++++...
T Consensus 86 ~a~~~~~ 92 (96)
T 2dgx_A 86 LATGASG 92 (96)
T ss_dssp ECCCSSC
T ss_pred EcCCCCC
Confidence 9976644
No 47
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=2.7e-19 Score=136.67 Aligned_cols=84 Identities=32% Similarity=0.636 Sum_probs=79.9
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
++..++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~ 102 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGH 102 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34678999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccc
Q 013716 183 SETK 186 (437)
Q Consensus 183 ~~~~ 186 (437)
+.++
T Consensus 103 a~~k 106 (108)
T 2jrs_A 103 VTER 106 (108)
T ss_dssp SCSS
T ss_pred cccC
Confidence 9765
No 48
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.6e-19 Score=133.16 Aligned_cols=83 Identities=33% Similarity=0.482 Sum_probs=78.7
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
+.+.++|||+|||+.+|+++|+++|++||.|..|++++++.+++++|||||+|.+.++|.+|++.||+..+.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSG 91 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34668899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q 013716 183 SET 185 (437)
Q Consensus 183 ~~~ 185 (437)
++.
T Consensus 92 a~~ 94 (95)
T 2cqc_A 92 PSS 94 (95)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 49
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.79 E-value=1.7e-19 Score=143.58 Aligned_cols=124 Identities=19% Similarity=0.291 Sum_probs=79.1
Q ss_pred cEEEEEecChHHHHHHHHHHhccCcccCCCCCeeeecCCCCCCCCcccccCcceEEEecCCCCCCHHHHHHHHhccCCee
Q 013716 231 GFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDNTSTEKIKELFQRHGEVT 310 (437)
Q Consensus 231 g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~ 310 (437)
-+.|+.+.+...+..|+..+++...... ....+..+. ......++|||+|||+.+++++|+++|++||.|.
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~---~~~~~~~~~------~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~ 75 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGR---GSMSYGRPP------PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVG 75 (135)
T ss_dssp ---------------------------------CCSCCSC------SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCS
T ss_pred ccccccccCCCchhhhhhhccCCCCCCC---CCCCcCCCC------CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEE
Confidence 3567777788888888888776532211 122222221 2224568999999999999999999999999999
Q ss_pred EEEeCCCCCC-C-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCCCCC
Q 013716 311 KVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363 (437)
Q Consensus 311 ~v~i~~~~~~-~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~~ 363 (437)
.|.|+.++.+ . +|||||+|.+.++|.+|+..|||..|.|++|+|.|++++..+
T Consensus 76 ~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 76 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp EEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred EEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 9999988643 3 999999999999999999999999999999999999876543
No 50
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.79 E-value=3.3e-19 Score=147.57 Aligned_cols=85 Identities=25% Similarity=0.437 Sum_probs=79.6
Q ss_pred CCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEe
Q 013716 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (437)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 181 (437)
.....++|||+|||+.+|+++|+.+|++||.|..|.|+.++.+|.++|||||+|.+.++|.+||..||+..|.|+.|.|.
T Consensus 68 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 147 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 147 (165)
T ss_dssp CCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccc
Q 013716 182 LSETK 186 (437)
Q Consensus 182 ~~~~~ 186 (437)
++.++
T Consensus 148 ~a~~~ 152 (165)
T 1rk8_A 148 WCFVK 152 (165)
T ss_dssp ESEEC
T ss_pred EecCC
Confidence 98754
No 51
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.3e-19 Score=133.23 Aligned_cols=85 Identities=26% Similarity=0.619 Sum_probs=79.7
Q ss_pred CCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEe
Q 013716 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (437)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 181 (437)
.....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++ |++..|.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999997 99999999999999
Q ss_pred eccccc
Q 013716 182 LSETKN 187 (437)
Q Consensus 182 ~~~~~~ 187 (437)
++.++.
T Consensus 85 ~a~~~~ 90 (99)
T 2dgs_A 85 RAEPRD 90 (99)
T ss_dssp ECCCCC
T ss_pred ECCCCc
Confidence 998654
No 52
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=6.9e-19 Score=132.87 Aligned_cols=84 Identities=26% Similarity=0.596 Sum_probs=79.0
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
....++|||+|||+.+|+++|+++|++||.|..|+|+.++ +++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999998 799999999999999999999999999999999999999
Q ss_pred ccccc
Q 013716 183 SETKN 187 (437)
Q Consensus 183 ~~~~~ 187 (437)
+.++.
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 98653
No 53
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.79 E-value=7.6e-20 Score=135.06 Aligned_cols=80 Identities=31% Similarity=0.559 Sum_probs=72.9
Q ss_pred CeEEEcCCCcCCCHHHHHHhhcccC--CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 107 SEVFIGGLPKDASEEDLRDLCEPIG--DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G--~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
.+|||+|||+++|+++|+++|++|| .|..|+++.++.+|+++|||||+|.+.++|.+|++.||+..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999987
Q ss_pred cc
Q 013716 185 TK 186 (437)
Q Consensus 185 ~~ 186 (437)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 65
No 54
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.79 E-value=2.1e-19 Score=132.95 Aligned_cols=78 Identities=21% Similarity=0.365 Sum_probs=71.4
Q ss_pred cceEEEecCCCCCCHHHHHHHHhccCC--eeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCc----eeCCeEEE
Q 013716 282 VKALYVKNIPDNTSTEKIKELFQRHGE--VTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKY----EIDGQVLE 353 (437)
Q Consensus 282 ~~~l~V~nLp~~~t~~~L~~~f~~~G~--v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~----~i~g~~l~ 353 (437)
-.+|||+|||+.+|+++|+++|++||. |..|+|++++.+. ||||||+|.+.++|.+|+..|||. .|+||+|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 369999999999999999999999995 6799999987644 999999999999999999999986 69999999
Q ss_pred EEeccC
Q 013716 354 VVLAKP 359 (437)
Q Consensus 354 v~~a~~ 359 (437)
|+||+.
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999974
No 55
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.2e-18 Score=132.98 Aligned_cols=82 Identities=26% Similarity=0.499 Sum_probs=75.0
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+++|++||.|..|+|+.++.+. +|||||+|.+.++|.+||..|++ .|.|++|+|.|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 456899999999999999999999999999999999887543 89999999999999999999998 899999999999
Q ss_pred cCCCC
Q 013716 358 KPQTD 362 (437)
Q Consensus 358 ~~~~~ 362 (437)
.+...
T Consensus 94 ~~~~~ 98 (116)
T 2cqd_A 94 YLGAK 98 (116)
T ss_dssp TTTCC
T ss_pred ccCCC
Confidence 76543
No 56
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.79 E-value=5.3e-19 Score=135.13 Aligned_cols=81 Identities=17% Similarity=0.252 Sum_probs=75.1
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCC-C-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 281 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|+..|||..|.|+.|+|.++.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~ 84 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDI 84 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 4579999999999999999999999999999999988764 3 9999999999999999999999999999999999997
Q ss_pred CCC
Q 013716 359 PQT 361 (437)
Q Consensus 359 ~~~ 361 (437)
...
T Consensus 85 ~~~ 87 (110)
T 3s8s_A 85 KGQ 87 (110)
T ss_dssp TTH
T ss_pred CCc
Confidence 554
No 57
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.79 E-value=7.5e-19 Score=136.37 Aligned_cols=85 Identities=34% Similarity=0.576 Sum_probs=80.4
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 91 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34678999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccccc
Q 013716 183 SETKN 187 (437)
Q Consensus 183 ~~~~~ 187 (437)
+.++.
T Consensus 92 a~~~~ 96 (115)
T 2dgo_A 92 ATRKP 96 (115)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 98654
No 58
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.1e-18 Score=132.21 Aligned_cols=84 Identities=24% Similarity=0.464 Sum_probs=77.1
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..||+..|.|++|+|.|+
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 456899999999999999999999999999999999885543 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 013716 358 KPQTDK 363 (437)
Q Consensus 358 ~~~~~~ 363 (437)
+++..+
T Consensus 90 ~~~~~~ 95 (102)
T 2cqb_A 90 KPMRIK 95 (102)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 877554
No 59
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.79 E-value=5.8e-19 Score=132.95 Aligned_cols=84 Identities=32% Similarity=0.491 Sum_probs=79.4
Q ss_pred CCCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEE--------EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCc
Q 013716 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFE--------VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172 (437)
Q Consensus 101 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~--------v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~ 172 (437)
..++..++|||+|||+++|+++|+++|++||.|.. |+++.++.+|+++|||||+|.+.++|.+|++.|++..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 44567899999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred cCCeEEEEeecc
Q 013716 173 LKGKTIRCSLSE 184 (437)
Q Consensus 173 ~~g~~i~v~~~~ 184 (437)
+.|+.|+|.+++
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999874
No 60
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.79 E-value=6.4e-19 Score=144.62 Aligned_cols=83 Identities=27% Similarity=0.424 Sum_probs=76.4
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+||..||++.|.|+.|+|.|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 345899999999999999999999999999999999887643 899999999999999999999999999999999999
Q ss_pred cCCCC
Q 013716 358 KPQTD 362 (437)
Q Consensus 358 ~~~~~ 362 (437)
++...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87544
No 61
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.79 E-value=1.6e-18 Score=134.12 Aligned_cols=83 Identities=24% Similarity=0.476 Sum_probs=76.6
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
...++|||+|||+.+++++|+++|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+..|||..|.|+.|+|.|++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 84 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAK 84 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 345799999999999999999999999999999999988555 9999999999999999999999999999999999998
Q ss_pred CCCC
Q 013716 359 PQTD 362 (437)
Q Consensus 359 ~~~~ 362 (437)
++..
T Consensus 85 ~~~~ 88 (116)
T 2fy1_A 85 KPSF 88 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6543
No 62
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.79 E-value=5.4e-19 Score=137.13 Aligned_cols=84 Identities=31% Similarity=0.563 Sum_probs=79.9
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
+..++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 45689999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccc
Q 013716 184 ETKN 187 (437)
Q Consensus 184 ~~~~ 187 (437)
.++.
T Consensus 103 ~~~~ 106 (115)
T 2cpz_A 103 RSKN 106 (115)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 8654
No 63
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=130.43 Aligned_cols=82 Identities=20% Similarity=0.479 Sum_probs=75.6
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCC-C-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 281 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
..++|||+|||..+++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|+..|||+.|.|++|+|.|+.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 83 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVT 83 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 4579999999999999999999999999999999988653 3 8999999999999999999999999999999999998
Q ss_pred CCCC
Q 013716 359 PQTD 362 (437)
Q Consensus 359 ~~~~ 362 (437)
++..
T Consensus 84 ~~~~ 87 (95)
T 2dnz_A 84 ERLD 87 (95)
T ss_dssp CCCC
T ss_pred cccC
Confidence 6644
No 64
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.6e-18 Score=132.22 Aligned_cols=84 Identities=23% Similarity=0.394 Sum_probs=77.2
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCC-C-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|+..||++.|.|++|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 45689999999999999999999999999999999988743 3 999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 013716 358 KPQTDK 363 (437)
Q Consensus 358 ~~~~~~ 363 (437)
.++...
T Consensus 93 ~~~~~~ 98 (105)
T 1x5u_A 93 SAHNKN 98 (105)
T ss_dssp TTTSCC
T ss_pred CCCCcC
Confidence 876554
No 65
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.9e-19 Score=135.04 Aligned_cols=87 Identities=32% Similarity=0.492 Sum_probs=81.3
Q ss_pred CCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEe
Q 013716 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (437)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 181 (437)
.....++|||+|||+.+|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34467899999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred ecccccc
Q 013716 182 LSETKNR 188 (437)
Q Consensus 182 ~~~~~~~ 188 (437)
++.++..
T Consensus 91 ~a~~~~~ 97 (105)
T 1x5u_A 91 KASAHNK 97 (105)
T ss_dssp ETTTTSC
T ss_pred ECCCCCc
Confidence 9987643
No 66
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.78 E-value=9e-20 Score=137.36 Aligned_cols=82 Identities=26% Similarity=0.366 Sum_probs=78.4
Q ss_pred CCCeEEEcCCCc------CCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCC-eE
Q 013716 105 NGSEVFIGGLPK------DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG-KT 177 (437)
Q Consensus 105 ~~~~l~v~nLp~------~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g-~~ 177 (437)
..++|||+|||+ ++++++|+++|++||.|..|+|++++.||+++|||||+|.+.++|.+|++.||+..|.| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 457899999999 99999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEEeecccc
Q 013716 178 IRCSLSETK 186 (437)
Q Consensus 178 i~v~~~~~~ 186 (437)
|+|.++.+.
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999998764
No 67
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.7e-19 Score=134.91 Aligned_cols=85 Identities=32% Similarity=0.576 Sum_probs=80.5
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34678999999999999999999999999999999999989999999999999999999999999999999999999999
Q ss_pred ccccc
Q 013716 183 SETKN 187 (437)
Q Consensus 183 ~~~~~ 187 (437)
+.++.
T Consensus 89 a~~~~ 93 (102)
T 2cqb_A 89 AKPMR 93 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98653
No 68
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.5e-19 Score=133.51 Aligned_cols=84 Identities=30% Similarity=0.546 Sum_probs=79.6
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEE-EEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEV-RLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v-~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
...++|||+|||+.+|+++|+++|++||.|..| +|++++.++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 9999988999999999999999999999999999999999999999
Q ss_pred ccccc
Q 013716 183 SETKN 187 (437)
Q Consensus 183 ~~~~~ 187 (437)
+.++.
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 97653
No 69
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=3.7e-19 Score=135.16 Aligned_cols=84 Identities=24% Similarity=0.385 Sum_probs=79.9
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
....++|||+|||+.+|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQV 89 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 013716 183 SETK 186 (437)
Q Consensus 183 ~~~~ 186 (437)
+...
T Consensus 90 a~~~ 93 (103)
T 2dnm_A 90 ARYG 93 (103)
T ss_dssp CSSC
T ss_pred CCcC
Confidence 9864
No 70
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3.2e-18 Score=132.58 Aligned_cols=83 Identities=19% Similarity=0.287 Sum_probs=76.7
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..||++.|.|+.|+|.+++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 445799999999999999999999999999999999887766 9999999999999999999999999999999999997
Q ss_pred CCCC
Q 013716 359 PQTD 362 (437)
Q Consensus 359 ~~~~ 362 (437)
....
T Consensus 93 ~~~~ 96 (114)
T 2do0_A 93 RALP 96 (114)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6543
No 71
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.1e-19 Score=134.67 Aligned_cols=86 Identities=30% Similarity=0.593 Sum_probs=80.7
Q ss_pred CCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEe
Q 013716 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (437)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 181 (437)
.....++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred eccccc
Q 013716 182 LSETKN 187 (437)
Q Consensus 182 ~~~~~~ 187 (437)
++.++.
T Consensus 88 ~a~~~~ 93 (102)
T 1x5s_A 88 QAGKSS 93 (102)
T ss_dssp EEECCC
T ss_pred ECCCCC
Confidence 987653
No 72
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.1e-19 Score=134.75 Aligned_cols=83 Identities=25% Similarity=0.494 Sum_probs=79.1
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
...++|||+|||+.+|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|+..|++..|.|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 013716 184 ETK 186 (437)
Q Consensus 184 ~~~ 186 (437)
.++
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 754
No 73
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.78 E-value=7.8e-19 Score=129.52 Aligned_cols=78 Identities=18% Similarity=0.283 Sum_probs=71.3
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCce--eCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYE--IDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~--i~g~~l~v~~a 357 (437)
.++++|||+|||+.+|+++|+++|++||.|..|++++. ||||||+|.+.++|.+|+..|++.. |.|++|+|.|+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~----kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK----KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 45689999999999999999999999999999999865 4899999999999999999999874 88999999999
Q ss_pred cCCC
Q 013716 358 KPQT 361 (437)
Q Consensus 358 ~~~~ 361 (437)
+.+.
T Consensus 95 ~~k~ 98 (100)
T 3r27_A 95 TSQK 98 (100)
T ss_dssp SCSC
T ss_pred cccc
Confidence 8764
No 74
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.78 E-value=1.6e-18 Score=142.68 Aligned_cols=133 Identities=21% Similarity=0.255 Sum_probs=109.1
Q ss_pred EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee-------------------ccccccccccCCC
Q 013716 135 EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL-------------------SETKNRLFIGNVP 195 (437)
Q Consensus 135 ~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~-------------------~~~~~~l~v~nl~ 195 (437)
.++|+.+. ..++|||||+|.+.++|++|++.+++.......+.+.. ....++|||+|||
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 79 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLT 79 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCC
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCC
Confidence 46677765 46899999999999999999988775433222222211 1235789999999
Q ss_pred CCCCHHHHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCeeeecCCCCCC
Q 013716 196 KNWTEDEFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKSTP 273 (437)
Q Consensus 196 ~~~~~~~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~ 273 (437)
+.+++++|+++|+.||. |..+.++++ ..++.++|||||+|.+.++|.+|+..|++. .+.++.+.|.|+.+....
T Consensus 80 ~~~~~~~l~~~F~~~G~-v~~~~i~~~-~~~g~~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 80 YRTSPDTLRRVFEKYGR-VGDVYIPRD-RYTKESRGFAFVRFHDKRDAEDAMDAMDGA--VLDGRELRVQMARYGRPP 153 (158)
T ss_dssp TTCCHHHHHHHHHHHSC-EEEEECCCC-SSCTTSCCEEEEEESBHHHHHHHHHHSTTE--ESSSSEEEEEEECCSSCC
T ss_pred CCCCHHHHHHHHHhcCC-eEEEEEeec-CCCCccceEEEEEECCHHHHHHHHHHhCCC--EECCeEEEEEECCCCCCC
Confidence 99999999999999998 999999998 467899999999999999999999998775 678999999999887543
No 75
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6e-19 Score=131.58 Aligned_cols=80 Identities=18% Similarity=0.275 Sum_probs=73.0
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcC--CceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE--KYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+++|++||.|..|+|+++ ||||||+|.+.++|.+|+..|+ +..|.|++|+|.|+
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 45589999999999999999999999999999999986 4999999999999999999886 47899999999999
Q ss_pred cCCCCC
Q 013716 358 KPQTDK 363 (437)
Q Consensus 358 ~~~~~~ 363 (437)
+++...
T Consensus 90 ~~~~~~ 95 (105)
T 1sjq_A 90 NHKELK 95 (105)
T ss_dssp SSSSCC
T ss_pred CCCCCC
Confidence 876554
No 76
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=132.02 Aligned_cols=84 Identities=23% Similarity=0.453 Sum_probs=77.0
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..||+..|.|++|+|.|+
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 455899999999999999999999999999999999886543 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 013716 358 KPQTDK 363 (437)
Q Consensus 358 ~~~~~~ 363 (437)
+++...
T Consensus 90 ~~~~~~ 95 (102)
T 1x5s_A 90 GKSSDN 95 (102)
T ss_dssp ECCCCC
T ss_pred CCCCCC
Confidence 876543
No 77
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=5e-19 Score=133.13 Aligned_cols=84 Identities=27% Similarity=0.467 Sum_probs=78.6
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCC---CCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKE---SGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~---~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 180 (437)
.+.++|||+|||+++|+++|+++|++||.|..|+|+.++. |++++|||||+|.+.++|.+|++.|++..|.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999999876 6699999999999999999999999999999999999
Q ss_pred eeccccc
Q 013716 181 SLSETKN 187 (437)
Q Consensus 181 ~~~~~~~ 187 (437)
.++.++.
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9998653
No 78
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=130.48 Aligned_cols=83 Identities=12% Similarity=0.244 Sum_probs=75.7
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhccCCeeEE-EeCCCCCC-C-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 281 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v-~i~~~~~~-~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
..++|||+|||+.+++++|+.+|++||.|..| +|+.++.+ . +|||||+|.+.++|.+|+..|||..|.|++|+|.|+
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 83 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45799999999999999999999999999999 99987443 3 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 013716 358 KPQTDK 363 (437)
Q Consensus 358 ~~~~~~ 363 (437)
.++..+
T Consensus 84 ~~~~~~ 89 (96)
T 1x5t_A 84 FKKDSK 89 (96)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 876543
No 79
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=130.81 Aligned_cols=83 Identities=19% Similarity=0.474 Sum_probs=77.0
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
...++|||+|||+.+++++|+++|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+..||+..|.|++|+|.|++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 445799999999999999999999999999999999888666 8999999999999999999999999999999999998
Q ss_pred CCCC
Q 013716 359 PQTD 362 (437)
Q Consensus 359 ~~~~ 362 (437)
++..
T Consensus 95 ~~~~ 98 (100)
T 2do4_A 95 SGPS 98 (100)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7654
No 80
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.78 E-value=1.2e-18 Score=127.93 Aligned_cols=81 Identities=28% Similarity=0.578 Sum_probs=75.3
Q ss_pred CCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEe
Q 013716 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (437)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 181 (437)
.....++|||+|||+.+|+++|+++|++||.|..|++++++.+++++|||||+|.+.++|.+|++ +++..|.|+.|.|.
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999995 58889999999998
Q ss_pred ec
Q 013716 182 LS 183 (437)
Q Consensus 182 ~~ 183 (437)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 81
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=8.6e-19 Score=135.19 Aligned_cols=86 Identities=30% Similarity=0.494 Sum_probs=80.7
Q ss_pred CCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC------CCccCC
Q 013716 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH------SKELKG 175 (437)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~------~~~~~g 175 (437)
.....++|||+|||+.+|+++|+++|.+||.|..|+|++++.+++++|||||+|.+.++|.+|++.|+ +..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34467899999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred eEEEEeeccccc
Q 013716 176 KTIRCSLSETKN 187 (437)
Q Consensus 176 ~~i~v~~~~~~~ 187 (437)
+.|.|.++.++.
T Consensus 91 ~~l~v~~a~~~~ 102 (111)
T 1x4h_A 91 RQLKVDLAVTRD 102 (111)
T ss_dssp CEEEEECCCCCC
T ss_pred EEEEEEECCCCc
Confidence 999999997653
No 82
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=2.1e-18 Score=129.91 Aligned_cols=83 Identities=34% Similarity=0.554 Sum_probs=75.9
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+. ||++.|.|+.|+|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 455899999999999999999999999999999999886543 8999999999999999998 9999999999999999
Q ss_pred cCCCCC
Q 013716 358 KPQTDK 363 (437)
Q Consensus 358 ~~~~~~ 363 (437)
.++..+
T Consensus 87 ~~~~~~ 92 (99)
T 2dgs_A 87 EPRDSK 92 (99)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 876554
No 83
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=132.10 Aligned_cols=83 Identities=29% Similarity=0.501 Sum_probs=76.9
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
...++|||+|||+.+++++|+++|++||.|..|.|+.+ .+. +|||||+|.+.++|.+|+..||+..|.|+.|+|.|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 45689999999999999999999999999999999988 445 8999999999999999999999999999999999998
Q ss_pred CCCCC
Q 013716 359 PQTDK 363 (437)
Q Consensus 359 ~~~~~ 363 (437)
++..+
T Consensus 92 ~~~~~ 96 (103)
T 2d9p_A 92 RKEER 96 (103)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 77654
No 84
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.78 E-value=2.8e-19 Score=155.55 Aligned_cols=82 Identities=29% Similarity=0.546 Sum_probs=77.2
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccC--CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIG--DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G--~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
..++|||+|||+++|+++|+++|++|| .|..|+|++++.+++++|||||+|.+.++|.+||+.||+..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 013716 183 SETK 186 (437)
Q Consensus 183 ~~~~ 186 (437)
+.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8643
No 85
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.78 E-value=4.6e-18 Score=128.98 Aligned_cols=79 Identities=32% Similarity=0.683 Sum_probs=72.6
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
.+.++|||+|||+.+++++|+++|++||.|..|.|++ +||||+|.+.++|.+|+..||++.|.|+.|+|.|+++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 82 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK------DYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKP 82 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS------SCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC------CEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCC
Confidence 4458999999999999999999999999999999873 6999999999999999999999999999999999987
Q ss_pred CCCCC
Q 013716 360 QTDKK 364 (437)
Q Consensus 360 ~~~~~ 364 (437)
+..+.
T Consensus 83 ~~~~~ 87 (103)
T 2dgu_A 83 PDQKR 87 (103)
T ss_dssp CCCCC
T ss_pred Ccccc
Confidence 76543
No 86
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=6.3e-19 Score=138.96 Aligned_cols=87 Identities=34% Similarity=0.489 Sum_probs=81.4
Q ss_pred CCCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 013716 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (437)
Q Consensus 101 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 180 (437)
..+.+.++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34457789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccccc
Q 013716 181 SLSETKN 187 (437)
Q Consensus 181 ~~~~~~~ 187 (437)
.++.+++
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9987653
No 87
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.78 E-value=1.3e-18 Score=126.59 Aligned_cols=79 Identities=16% Similarity=0.303 Sum_probs=73.4
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCC-C-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCC
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (437)
.+|||+|||..+++++|+++|++||.|..|.++.++.+ . +|||||+|.+.++|.+|+..|||..|.|++|+|.|++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999877543 3 999999999999999999999999999999999999875
Q ss_pred C
Q 013716 361 T 361 (437)
Q Consensus 361 ~ 361 (437)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 88
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=128.21 Aligned_cols=80 Identities=16% Similarity=0.334 Sum_probs=72.6
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCC-CC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 281 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
..++|||+|||..+++++|+++|++||.|..|.++.++. +. +|||||+|.+.++|.+|+..|||..|.|+.|+|.|++
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 84 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 84 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecC
Confidence 457999999999999999999999999999999998753 33 8999999999999999999999999999999999997
Q ss_pred CC
Q 013716 359 PQ 360 (437)
Q Consensus 359 ~~ 360 (437)
++
T Consensus 85 ~k 86 (87)
T 3bs9_A 85 RK 86 (87)
T ss_dssp --
T ss_pred CC
Confidence 64
No 89
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.77 E-value=2.3e-18 Score=133.51 Aligned_cols=84 Identities=21% Similarity=0.417 Sum_probs=76.9
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCC-CC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+++|++||.|..|+|+.++. +. +|||||+|.+.++|.+|+..||+..|.|++|+|.|+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 3457999999999999999999999999999999998874 34 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 013716 358 KPQTDK 363 (437)
Q Consensus 358 ~~~~~~ 363 (437)
+++..+
T Consensus 103 ~~~~~~ 108 (115)
T 2cpz_A 103 RSKNDS 108 (115)
T ss_dssp CCSCCC
T ss_pred CCCCcC
Confidence 877554
No 90
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5e-18 Score=130.28 Aligned_cols=82 Identities=22% Similarity=0.455 Sum_probs=74.3
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
...++|||+|||+.+++++|+++|++||.|..|.|..+.. .+|||||+|.+.++|.+|+..||+..|.|+.|+|.|+++
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~-~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRG-GPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSS-SSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 4558999999999999999999999999999999976542 389999999999999999999999999999999999986
Q ss_pred CCC
Q 013716 360 QTD 362 (437)
Q Consensus 360 ~~~ 362 (437)
+..
T Consensus 99 ~~~ 101 (109)
T 1x4a_A 99 GRG 101 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 91
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.77 E-value=1.2e-18 Score=128.58 Aligned_cols=80 Identities=28% Similarity=0.512 Sum_probs=76.9
Q ss_pred CCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 013716 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (437)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 185 (437)
.++|||+|||+++|+++|+++|++||.|..++++.++.+++++|||||+|.+.++|.+|+ .|++..+.|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 478999999999999999999999999999999999888999999999999999999999 9999999999999999876
Q ss_pred c
Q 013716 186 K 186 (437)
Q Consensus 186 ~ 186 (437)
+
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 92
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-18 Score=131.18 Aligned_cols=84 Identities=25% Similarity=0.530 Sum_probs=76.9
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCC-C-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|+..|||..|.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 45689999999999999999999999999999999988643 3 999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 013716 358 KPQTDK 363 (437)
Q Consensus 358 ~~~~~~ 363 (437)
.++..+
T Consensus 93 ~~~~~~ 98 (103)
T 2cq0_A 93 KPSTNS 98 (103)
T ss_dssp SCCCCS
T ss_pred CCCCCC
Confidence 876543
No 93
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=131.17 Aligned_cols=84 Identities=27% Similarity=0.466 Sum_probs=76.8
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||+.|.|+.|+|.|+
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 445899999999999999999999999999999999887633 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 013716 358 KPQTDK 363 (437)
Q Consensus 358 ~~~~~~ 363 (437)
++....
T Consensus 91 ~~~~~~ 96 (103)
T 2dnm_A 91 RYGRRD 96 (103)
T ss_dssp SSCCSC
T ss_pred CcCCCC
Confidence 866443
No 94
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.77 E-value=2.3e-18 Score=128.86 Aligned_cols=81 Identities=20% Similarity=0.394 Sum_probs=75.2
Q ss_pred cceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCC-C-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 282 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
.++|||+|||..+++++|+++|++||.|..|+|+.++.+ . +|||||+|.+.++|.+|+..|||..|+|+.|+|.|+.+
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 479999999999999999999999999999999988653 3 99999999999999999999999999999999999987
Q ss_pred CCC
Q 013716 360 QTD 362 (437)
Q Consensus 360 ~~~ 362 (437)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 654
No 95
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=4.3e-18 Score=130.31 Aligned_cols=84 Identities=27% Similarity=0.502 Sum_probs=76.5
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCC-C-CCC-ccEEEEEeCCHHHHHHHHHhc-CCceeCCeEEEEE
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPG-K-SGK-RDFGFIHYAERSSALKAVKDT-EKYEIDGQVLEVV 355 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~-~-~~~-~g~afV~f~~~~~A~~A~~~l-~g~~i~g~~l~v~ 355 (437)
...++|||+|||+.+++++|+++|++||.|..|+|+.+ + .+. +|||||+|.+.++|.+|+..| |+..|.|+.|+|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 45689999999999999999999999999999999988 3 333 999999999999999999999 9999999999999
Q ss_pred eccCCCCC
Q 013716 356 LAKPQTDK 363 (437)
Q Consensus 356 ~a~~~~~~ 363 (437)
|++++...
T Consensus 93 ~a~~~~~~ 100 (107)
T 2cph_A 93 WADSEVTV 100 (107)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99876543
No 96
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.77 E-value=1.8e-18 Score=126.45 Aligned_cols=79 Identities=23% Similarity=0.469 Sum_probs=73.2
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+++|++||.|..|.++.++.+. +|||||+|.+.++|.+|+..|||..|.|++|+|.||
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 345799999999999999999999999999999998875444 999999999999999999999999999999999998
Q ss_pred c
Q 013716 358 K 358 (437)
Q Consensus 358 ~ 358 (437)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 5
No 97
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=5e-18 Score=130.86 Aligned_cols=84 Identities=19% Similarity=0.389 Sum_probs=77.2
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcC------CceeCCeE
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTE------KYEIDGQV 351 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~------g~~i~g~~ 351 (437)
...++|||+|||+.+++++|+.+|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+..|| +..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 456899999999999999999999999999999999887643 8999999999999999999999 99999999
Q ss_pred EEEEeccCCCCC
Q 013716 352 LEVVLAKPQTDK 363 (437)
Q Consensus 352 l~v~~a~~~~~~ 363 (437)
|+|.|+.++...
T Consensus 93 l~v~~a~~~~~~ 104 (111)
T 1x4h_A 93 LKVDLAVTRDEA 104 (111)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEECCCCccC
Confidence 999999876554
No 98
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.3e-18 Score=127.35 Aligned_cols=81 Identities=17% Similarity=0.303 Sum_probs=73.1
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhc--CCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT--EKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l--~g~~i~g~~l~v~~a 357 (437)
.+.++|||+|||+.+++++|+.+|++||.|..|.|+++ ||||||+|.+.++|.+|+..| ++..|.|++|+|.|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 45689999999999999999999999999999999876 499999999999999999977 467899999999999
Q ss_pred cCCCCCC
Q 013716 358 KPQTDKK 364 (437)
Q Consensus 358 ~~~~~~~ 364 (437)
+++....
T Consensus 89 ~~~~~~~ 95 (101)
T 2cq1_A 89 NHKELKT 95 (101)
T ss_dssp SCSSCCC
T ss_pred CcccCcC
Confidence 8766543
No 99
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.77 E-value=1.5e-18 Score=122.80 Aligned_cols=74 Identities=23% Similarity=0.302 Sum_probs=69.6
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
.+.-|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|.+|++.||+..+.|++|+|..+.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467799999999999999999999999999999854 69999999999999999999999999999999999883
No 100
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.4e-19 Score=133.21 Aligned_cols=80 Identities=26% Similarity=0.437 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
...++|||+|||+++|+++|+++|++||.|.+|+|++++. |+++|||||+|.+.++|.+|+. +++..+.|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 3568899999999999999999999999999999999987 9999999999999999999997 8999999999999987
Q ss_pred cc
Q 013716 184 ET 185 (437)
Q Consensus 184 ~~ 185 (437)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 53
No 101
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=129.95 Aligned_cols=82 Identities=33% Similarity=0.471 Sum_probs=77.0
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
....++|||+|||+.+|+++|+++|++||.|..|+|++++. ++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34568999999999999999999999999999999999986 99999999999999999999999999999999999998
Q ss_pred ccc
Q 013716 183 SET 185 (437)
Q Consensus 183 ~~~ 185 (437)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 863
No 102
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=133.36 Aligned_cols=85 Identities=31% Similarity=0.567 Sum_probs=80.0
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeec-CCCCCcccEEEEEecCHHHHHHHHHHh-CCCccCCeEEEEe
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKD-KESGESKGFAFVSFRSKEFAKKAIDEL-HSKELKGKTIRCS 181 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~-~~~~~~~g~afV~f~~~~~A~~a~~~l-~~~~~~g~~i~v~ 181 (437)
...++|||+|||+.+|+++|+++|++||.|..|+|+++ +.+++++|||||+|.+.++|.+|+..| |+..|.|+.|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 46689999999999999999999999999999999998 778999999999999999999999999 9999999999999
Q ss_pred ecccccc
Q 013716 182 LSETKNR 188 (437)
Q Consensus 182 ~~~~~~~ 188 (437)
++.++..
T Consensus 93 ~a~~~~~ 99 (107)
T 2cph_A 93 WADSEVT 99 (107)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9987644
No 103
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.77 E-value=1.1e-18 Score=134.29 Aligned_cols=84 Identities=25% Similarity=0.451 Sum_probs=79.4
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
....++|||+|||+.+|+++|+.+|++||.|..|+++.++.++.++|||||+|.+.++|.+|+..|++..|.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 34668999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred cccc
Q 013716 183 SETK 186 (437)
Q Consensus 183 ~~~~ 186 (437)
+.++
T Consensus 103 a~~~ 106 (110)
T 1oo0_B 103 CFVK 106 (110)
T ss_dssp SEES
T ss_pred cccC
Confidence 8754
No 104
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.77 E-value=2.6e-18 Score=131.02 Aligned_cols=84 Identities=19% Similarity=0.347 Sum_probs=77.7
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCC---eEEEEE
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDG---QVLEVV 355 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g---~~l~v~ 355 (437)
...++|||+|||+.+++++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.| ++|+|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 346899999999999999999999999999999999888666 9999999999999999999999999998 999999
Q ss_pred eccCCCCC
Q 013716 356 LAKPQTDK 363 (437)
Q Consensus 356 ~a~~~~~~ 363 (437)
|+.++..+
T Consensus 93 ~a~~~~~~ 100 (105)
T 2dnh_A 93 FADTDKES 100 (105)
T ss_dssp ESCSSCCC
T ss_pred ECccCccc
Confidence 99877654
No 105
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.77 E-value=2e-18 Score=131.65 Aligned_cols=83 Identities=33% Similarity=0.517 Sum_probs=78.0
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCC---eEEEE
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG---KTIRC 180 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g---~~i~v 180 (437)
...++|||+|||+.+|+++|+++|++||.|..|+|++++ +++++|||||+|.+.++|.+|++.||+..+.| +.|.|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 457899999999999999999999999999999999998 69999999999999999999999999999998 99999
Q ss_pred eeccccc
Q 013716 181 SLSETKN 187 (437)
Q Consensus 181 ~~~~~~~ 187 (437)
.++.++.
T Consensus 92 ~~a~~~~ 98 (105)
T 2dnh_A 92 KFADTDK 98 (105)
T ss_dssp EESCSSC
T ss_pred EECccCc
Confidence 9997653
No 106
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=131.37 Aligned_cols=82 Identities=29% Similarity=0.521 Sum_probs=77.5
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
...++|||+|||+.+|+++|+++|++||.|..|+|+.+ ++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 36789999999999999999999999999999999998 6999999999999999999999999999999999999999
Q ss_pred cccc
Q 013716 184 ETKN 187 (437)
Q Consensus 184 ~~~~ 187 (437)
.++.
T Consensus 91 ~~~~ 94 (103)
T 2d9p_A 91 QRKE 94 (103)
T ss_dssp SSCC
T ss_pred cccc
Confidence 8653
No 107
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.77 E-value=4.7e-18 Score=136.65 Aligned_cols=84 Identities=25% Similarity=0.487 Sum_probs=76.9
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+.+|+.||.|..|+|+.++.+. +|||||+|.+.++|.+|+..|||..|.|+.|+|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 445899999999999999999999999999999999887544 999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 013716 358 KPQTDK 363 (437)
Q Consensus 358 ~~~~~~ 363 (437)
+++..+
T Consensus 120 ~~~~~~ 125 (139)
T 1u6f_A 120 ASGHQR 125 (139)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 876443
No 108
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=8.6e-19 Score=132.11 Aligned_cols=84 Identities=19% Similarity=0.420 Sum_probs=79.3
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeE-EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeE----
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVF-EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT---- 177 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~-~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~---- 177 (437)
....++|||+|||+.+|+++|+++|++||.|. .|+|++++.+++++|||||+|.+.++|.+|++.||+..|.|+.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~ 85 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKR 85 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCccee
Confidence 34678999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EEEeecccc
Q 013716 178 IRCSLSETK 186 (437)
Q Consensus 178 i~v~~~~~~ 186 (437)
|+|.++.+.
T Consensus 86 l~v~~a~~~ 94 (99)
T 2div_A 86 FKLNYATYS 94 (99)
T ss_dssp CCEEETTCC
T ss_pred EEEeecCCC
Confidence 999998754
No 109
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=129.95 Aligned_cols=79 Identities=14% Similarity=0.165 Sum_probs=71.5
Q ss_pred cCcceEEEecCCC-CCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCc--eeCCeEEEEEe
Q 013716 280 SQVKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY--EIDGQVLEVVL 356 (437)
Q Consensus 280 ~~~~~l~V~nLp~-~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~i~g~~l~v~~ 356 (437)
.+.++|||+|||+ .+++++|+++|++||.|..|.|++++ |||||+|.+.++|.+|+..||+. .|.|++|+|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k----g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI----NEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS----SCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC----CEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 3568999999999 99999999999999999999998765 89999999999999999998864 59999999999
Q ss_pred ccCCCC
Q 013716 357 AKPQTD 362 (437)
Q Consensus 357 a~~~~~ 362 (437)
|+....
T Consensus 89 a~~~~~ 94 (102)
T 1x4d_A 89 SQKYKR 94 (102)
T ss_dssp ECCCTT
T ss_pred CCCCCC
Confidence 986543
No 110
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3.8e-18 Score=129.75 Aligned_cols=82 Identities=24% Similarity=0.464 Sum_probs=75.2
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCC--C-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEe
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG--K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~--~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 356 (437)
...++|||+|||+.+++++|+++|+.|| |..|.|+.++.+ . +|||||+|.+.++|.+|| .||+..|.|+.|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 4558999999999999999999999999 999999988763 4 999999999999999999 9999999999999999
Q ss_pred ccCCCCC
Q 013716 357 AKPQTDK 363 (437)
Q Consensus 357 a~~~~~~ 363 (437)
+.++..+
T Consensus 91 a~~~~~~ 97 (104)
T 1wi8_A 91 ADQAQDK 97 (104)
T ss_dssp CCCCCCC
T ss_pred ccCCCCC
Confidence 9876544
No 111
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=4.5e-18 Score=126.85 Aligned_cols=79 Identities=22% Similarity=0.446 Sum_probs=73.8
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..||+..|.|++|+|.||
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 455899999999999999999999999999999999887643 899999999999999999999999999999999998
Q ss_pred c
Q 013716 358 K 358 (437)
Q Consensus 358 ~ 358 (437)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 112
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=127.21 Aligned_cols=78 Identities=24% Similarity=0.289 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCc--cCCeEEEE
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE--LKGKTIRC 180 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~--~~g~~i~v 180 (437)
.+++++|||+|||+++|+++|+++|++||.|.+|++++ +||||||+|.+.++|.+|++.|++.. +.|++|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 35778999999999999999999999999999999975 47899999999999999999999875 78999999
Q ss_pred eecccc
Q 013716 181 SLSETK 186 (437)
Q Consensus 181 ~~~~~~ 186 (437)
.+++.+
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999764
No 113
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.77 E-value=2.1e-18 Score=130.91 Aligned_cols=82 Identities=23% Similarity=0.501 Sum_probs=77.5
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
...++|||+|||+.+|+++|+++|++|| |..|+|++++.+++++|||||+|.+.++|.+|+ .|++..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 3568999999999999999999999997 999999999999999999999999999999999 89999999999999999
Q ss_pred cccc
Q 013716 184 ETKN 187 (437)
Q Consensus 184 ~~~~ 187 (437)
.++.
T Consensus 91 ~~~~ 94 (103)
T 2dng_A 91 EGRK 94 (103)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7653
No 114
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.77 E-value=2.1e-18 Score=122.10 Aligned_cols=73 Identities=15% Similarity=0.184 Sum_probs=69.0
Q ss_pred cceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 282 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
+.-|||+||++.+|+++|+++|.+||.|..+++... ||||||+|.+.++|.+|++.||+..+.||+|+|.+|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~----kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN----QGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC----CcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 357999999999999999999999999999999774 5999999999999999999999999999999999995
No 115
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=141.80 Aligned_cols=82 Identities=24% Similarity=0.456 Sum_probs=77.6
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccC--CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIG--DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G--~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
..++|||+|||+++|+++|+++|+.|| .|..|+|+.++.+|+++|||||+|.+.++|.+||+.|++..|.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 013716 183 SETK 186 (437)
Q Consensus 183 ~~~~ 186 (437)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9754
No 116
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=128.35 Aligned_cols=82 Identities=20% Similarity=0.438 Sum_probs=77.1
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCC-cccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGE-SKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~-~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
..++|||+|||+++|+++|+++|++||.|..|+++.+..++. ++|||||+|.+.++|.+|++.||+..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 568999999999999999999999999999999999887666 9999999999999999999999999999999999998
Q ss_pred ccc
Q 013716 184 ETK 186 (437)
Q Consensus 184 ~~~ 186 (437)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 117
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=130.20 Aligned_cols=79 Identities=27% Similarity=0.389 Sum_probs=72.0
Q ss_pred CCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC--CccCCeEEE
Q 013716 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS--KELKGKTIR 179 (437)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~--~~~~g~~i~ 179 (437)
.++..++|||+|||+++|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.|++ ..|.|++|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3557899999999999999999999999999999999864 78999999999999999998864 689999999
Q ss_pred Eeecccc
Q 013716 180 CSLSETK 186 (437)
Q Consensus 180 v~~~~~~ 186 (437)
|.+++++
T Consensus 86 V~~A~~~ 92 (105)
T 1sjq_A 86 IQFSNHK 92 (105)
T ss_dssp BCCCSSS
T ss_pred EEEcCCC
Confidence 9999765
No 118
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.77 E-value=9.7e-19 Score=133.62 Aligned_cols=85 Identities=29% Similarity=0.592 Sum_probs=79.8
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCcc---CCeEEE
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL---KGKTIR 179 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~---~g~~i~ 179 (437)
+...++|||+|||+.+|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.||+..+ .|+.|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999987 899999
Q ss_pred Eeeccccc
Q 013716 180 CSLSETKN 187 (437)
Q Consensus 180 v~~~~~~~ 187 (437)
|.++.++.
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99998654
No 119
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.77 E-value=1.4e-18 Score=143.85 Aligned_cols=129 Identities=16% Similarity=0.190 Sum_probs=76.1
Q ss_pred EEecChHHHHHHHHHHhccCcccCCCCCeeeecCCCC--------------CCCCcccccCcceEEEecCCCCCCHHHHH
Q 013716 235 VLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS--------------TPDHSAAASQVKALYVKNIPDNTSTEKIK 300 (437)
Q Consensus 235 v~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~--------------~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 300 (437)
..|.+.++|..++..+......-.++.....+..... ...........++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 4566666666666666655444444444433321110 01111122345789999999999999999
Q ss_pred HHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCCCCC
Q 013716 301 ELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTDK 363 (437)
Q Consensus 301 ~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~~ 363 (437)
.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+||..|||..|.|+.|+|.|+.++..+
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK 155 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC--
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 999999999999999875443 899999999999999999999999999999999999876554
No 120
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=132.70 Aligned_cols=81 Identities=26% Similarity=0.434 Sum_probs=76.2
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
...++|||+|||..+++++|+++|++||.|..|.|..++.+.+|||||+|.+.++|.+|+..|||..|+|++|+|.++++
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 45689999999999999999999999999999999988766699999999999999999999999999999999999986
Q ss_pred C
Q 013716 360 Q 360 (437)
Q Consensus 360 ~ 360 (437)
+
T Consensus 107 ~ 107 (109)
T 2err_A 107 R 107 (109)
T ss_dssp S
T ss_pred C
Confidence 5
No 121
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.4e-18 Score=134.33 Aligned_cols=84 Identities=30% Similarity=0.502 Sum_probs=79.4
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeE--------EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCC
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVF--------EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~--------~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 175 (437)
...++|||+|||+.+|+++|+++|++||.|. .|+|+.++.+++++|||||+|.+.++|.+|++.||+..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4678999999999999999999999999999 69999998899999999999999999999999999999999
Q ss_pred eEEEEeeccccc
Q 013716 176 KTIRCSLSETKN 187 (437)
Q Consensus 176 ~~i~v~~~~~~~ 187 (437)
+.|+|.++.++.
T Consensus 93 ~~l~V~~a~~~~ 104 (113)
T 2cpe_A 93 SKLKVSLARKKP 104 (113)
T ss_dssp EECEEECSSCCC
T ss_pred CEEEEEECCCCC
Confidence 999999998654
No 122
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4e-19 Score=129.84 Aligned_cols=81 Identities=28% Similarity=0.562 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
...++|||+|||+.+|+++|+++|++||.|..|+++.++.+++++|||||+|.+.++|.+|++.||+..+.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46789999999999999999999999999999999999989999999999999999999999999999999999888765
Q ss_pred c
Q 013716 184 E 184 (437)
Q Consensus 184 ~ 184 (437)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 123
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.2e-18 Score=129.62 Aligned_cols=83 Identities=29% Similarity=0.513 Sum_probs=75.5
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCC--C--C-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013716 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS--G--K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (437)
Q Consensus 281 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~--~--~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 355 (437)
..++|||+|||+.+++++|+++|++||.|..|.|..++. + . +|||||+|.+.++|.+|+..|||+.|.|++|+|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVR 83 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 457999999999999999999999999999999987665 2 3 8999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 013716 356 LAKPQTDK 363 (437)
Q Consensus 356 ~a~~~~~~ 363 (437)
++.++...
T Consensus 84 ~a~~~~~~ 91 (98)
T 2cpf_A 84 ISERATKP 91 (98)
T ss_dssp CSSCSSCC
T ss_pred EccCCCCC
Confidence 99876543
No 124
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.77 E-value=1.5e-18 Score=134.37 Aligned_cols=84 Identities=32% Similarity=0.601 Sum_probs=79.0
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
....++|||+|||+++|+++|+++|++||.|..|+|+.+. +++++|||||+|.+.++|.+|++.|++..|.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3467899999999999999999999999999999999998 799999999999999999999999999999999999999
Q ss_pred ccccc
Q 013716 183 SETKN 187 (437)
Q Consensus 183 ~~~~~ 187 (437)
+.+..
T Consensus 83 a~~~~ 87 (116)
T 2fy1_A 83 AKKPS 87 (116)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 98653
No 125
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.77 E-value=1.1e-18 Score=136.14 Aligned_cols=82 Identities=30% Similarity=0.545 Sum_probs=77.5
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
.+..++|||+|||+++|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999999988
Q ss_pred cc
Q 013716 183 SE 184 (437)
Q Consensus 183 ~~ 184 (437)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 126
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.76 E-value=3.7e-18 Score=131.29 Aligned_cols=83 Identities=20% Similarity=0.330 Sum_probs=76.3
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|+.|+|.|+
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 455899999999999999999999999999999998876433 899999999999999999999999999999999999
Q ss_pred cCCCC
Q 013716 358 KPQTD 362 (437)
Q Consensus 358 ~~~~~ 362 (437)
.++..
T Consensus 104 ~~~~~ 108 (110)
T 1oo0_B 104 FVKGP 108 (110)
T ss_dssp EESSC
T ss_pred ccCCC
Confidence 87654
No 127
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.6e-18 Score=128.59 Aligned_cols=80 Identities=16% Similarity=0.202 Sum_probs=72.0
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCc--eeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY--EIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~i~g~~l~v~~a 357 (437)
.+.++|||+|||+.+++++|+++|++||.|..|.|+++ ||||||+|.+.++|.+|+..|++. .|.|++|+|.|+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 44589999999999999999999999999999999875 499999999999999999988754 599999999999
Q ss_pred cCCCCC
Q 013716 358 KPQTDK 363 (437)
Q Consensus 358 ~~~~~~ 363 (437)
+.+...
T Consensus 89 ~~~~~~ 94 (104)
T 1wex_A 89 TSKRIT 94 (104)
T ss_dssp SSSSCC
T ss_pred cCcccc
Confidence 876554
No 128
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.1e-18 Score=131.19 Aligned_cols=84 Identities=12% Similarity=0.320 Sum_probs=77.2
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhc-cCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCce-eCCeEEEEEe
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQR-HGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYE-IDGQVLEVVL 356 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~-~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~-i~g~~l~v~~ 356 (437)
...++|||+|||+.+++++|+++|++ ||.|..|.|+.+..+. +|||||+|.+.++|.+|+..||+.. |.|++|+|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 44579999999999999999999999 9999999999887655 9999999999999999999999999 9999999999
Q ss_pred ccCCCCC
Q 013716 357 AKPQTDK 363 (437)
Q Consensus 357 a~~~~~~ 363 (437)
+.++..+
T Consensus 87 a~~~~~~ 93 (104)
T 2dhg_A 87 AIPKASR 93 (104)
T ss_dssp CCCCCSC
T ss_pred ccCCCcC
Confidence 9876544
No 129
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.76 E-value=3e-18 Score=131.15 Aligned_cols=82 Identities=26% Similarity=0.372 Sum_probs=77.6
Q ss_pred CCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEe
Q 013716 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (437)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 181 (437)
.....++|||+|||+.+|+++|+++|++||.|..|+|+.+. +++++|||||+|.+.++|.+|++.|++..|.|+.|.|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999999999998 79999999999999999999999999999999999999
Q ss_pred ecc
Q 013716 182 LSE 184 (437)
Q Consensus 182 ~~~ 184 (437)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 130
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.76 E-value=2.4e-18 Score=135.84 Aligned_cols=84 Identities=15% Similarity=0.286 Sum_probs=76.5
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|+.|+|.|+
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 445799999999999999999999999999999999886433 899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 013716 358 KPQTDK 363 (437)
Q Consensus 358 ~~~~~~ 363 (437)
.++...
T Consensus 100 ~~~~~~ 105 (126)
T 3ex7_B 100 FVRGPP 105 (126)
T ss_dssp EESSSC
T ss_pred cCCCCC
Confidence 876543
No 131
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.1e-18 Score=127.36 Aligned_cols=80 Identities=20% Similarity=0.336 Sum_probs=74.3
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCC-C-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|+..|||..|.|++|+|.|+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 45689999999999999999999999999999999987764 3 899999999999999999999999999999999998
Q ss_pred cC
Q 013716 358 KP 359 (437)
Q Consensus 358 ~~ 359 (437)
+.
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 132
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.76 E-value=2.3e-18 Score=128.73 Aligned_cols=80 Identities=24% Similarity=0.402 Sum_probs=74.9
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..||++.|.|++|+|.|++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 445899999999999999999999999999999999887766 9999999999999999999999999999999999986
Q ss_pred C
Q 013716 359 P 359 (437)
Q Consensus 359 ~ 359 (437)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 133
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.76 E-value=5.4e-18 Score=129.43 Aligned_cols=84 Identities=23% Similarity=0.396 Sum_probs=76.5
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCcee---CCeEEEE
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEI---DGQVLEV 354 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i---~g~~l~v 354 (437)
...++|||+|||..+++++|+++|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+..||+..+ .|++|+|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v 90 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQV 90 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEE
Confidence 455899999999999999999999999999999999987633 89999999999999999999999988 8999999
Q ss_pred EeccCCCCC
Q 013716 355 VLAKPQTDK 363 (437)
Q Consensus 355 ~~a~~~~~~ 363 (437)
.|+.++..+
T Consensus 91 ~~a~~~~~~ 99 (106)
T 2dgp_A 91 KPADSESRG 99 (106)
T ss_dssp EECCCCSCC
T ss_pred EECCccccc
Confidence 999876543
No 134
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=133.77 Aligned_cols=82 Identities=26% Similarity=0.560 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
...++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.+++ .|.|+.|.|.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 4668999999999999999999999999999999999999999999999999999999999999998 899999999998
Q ss_pred ccc
Q 013716 184 ETK 186 (437)
Q Consensus 184 ~~~ 186 (437)
...
T Consensus 94 ~~~ 96 (116)
T 2cqd_A 94 YLG 96 (116)
T ss_dssp TTT
T ss_pred ccC
Confidence 653
No 135
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=130.94 Aligned_cols=82 Identities=24% Similarity=0.488 Sum_probs=77.4
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCC-CCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES-GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~-~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
...++|||+|||+.+|+++|+++|+.|| |..|+|++++.+ ++++|||||+|.+.++|.+|| .|++..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 90 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDV 90 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEE
Confidence 3568999999999999999999999999 999999999887 999999999999999999999 9999999999999999
Q ss_pred ccccc
Q 013716 183 SETKN 187 (437)
Q Consensus 183 ~~~~~ 187 (437)
+.++.
T Consensus 91 a~~~~ 95 (104)
T 1wi8_A 91 ADQAQ 95 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 98653
No 136
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.76 E-value=2.2e-18 Score=131.86 Aligned_cols=85 Identities=31% Similarity=0.523 Sum_probs=75.2
Q ss_pred CCCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 013716 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (437)
Q Consensus 101 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 180 (437)
......++|||+|||+.+|+++|+++|+.||.|..|+|++++.+|+++|||||+|.+.++|.+|+..+ +..|.|+.|.|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999775 58999999999
Q ss_pred eecccc
Q 013716 181 SLSETK 186 (437)
Q Consensus 181 ~~~~~~ 186 (437)
.++.++
T Consensus 99 ~~a~~~ 104 (109)
T 2rs2_A 99 KVAFPR 104 (109)
T ss_dssp EECCCC
T ss_pred EEccCC
Confidence 998764
No 137
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=5.8e-18 Score=128.44 Aligned_cols=82 Identities=21% Similarity=0.329 Sum_probs=74.4
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+++|++|| |..|+|+.++.+. +|||||+|.+.++|.+|+ .||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 90 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIA 90 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEe
Confidence 4568999999999999999999999997 9999999887543 899999999999999999 89999999999999999
Q ss_pred cCCCCC
Q 013716 358 KPQTDK 363 (437)
Q Consensus 358 ~~~~~~ 363 (437)
.++...
T Consensus 91 ~~~~~~ 96 (103)
T 2dng_A 91 EGRKQD 96 (103)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 876543
No 138
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.76 E-value=9e-19 Score=130.95 Aligned_cols=81 Identities=20% Similarity=0.286 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
+..++|||+|||+.+|+++|+++|.+||.|..++++.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34589999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred c
Q 013716 184 E 184 (437)
Q Consensus 184 ~ 184 (437)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 139
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.8e-18 Score=131.69 Aligned_cols=84 Identities=25% Similarity=0.371 Sum_probs=78.9
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcc-cCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCc-cCCeEEEE
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEP-IGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE-LKGKTIRC 180 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~-~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~-~~g~~i~v 180 (437)
+...++|||+|||+.+|+++|+++|++ ||.|..|+|+.+. +++++|||||+|.+.++|.+|++.|++.. |.|+.|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 456789999999999999999999999 9999999999998 89999999999999999999999999999 99999999
Q ss_pred eeccccc
Q 013716 181 SLSETKN 187 (437)
Q Consensus 181 ~~~~~~~ 187 (437)
.++.++.
T Consensus 85 ~~a~~~~ 91 (104)
T 2dhg_A 85 SVAIPKA 91 (104)
T ss_dssp CBCCCCC
T ss_pred EEccCCC
Confidence 9987653
No 140
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=132.51 Aligned_cols=84 Identities=26% Similarity=0.524 Sum_probs=79.0
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+||.. ++..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999988 99999999999999
Q ss_pred ccccc
Q 013716 183 SETKN 187 (437)
Q Consensus 183 ~~~~~ 187 (437)
+.++.
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 87654
No 141
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.3e-18 Score=130.85 Aligned_cols=83 Identities=19% Similarity=0.290 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
...++|||+|||+.+|+++|+++|.+||.|..++++.++.+++++|||||+|.+.++|.+|++.||+..|.|+.|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 35688999999999999999999999999998888998889999999999999999999999999999999999999998
Q ss_pred ccc
Q 013716 184 ETK 186 (437)
Q Consensus 184 ~~~ 186 (437)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 753
No 142
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.76 E-value=2.3e-18 Score=127.87 Aligned_cols=83 Identities=16% Similarity=0.319 Sum_probs=75.2
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
...++|||+|||+.+++++|+++|++||.|..|.|.++....+|||||+|.+.++|.+|+..||+..|.|+.|+|.|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 85 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRN 85 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 44589999999999999999999999999999999875333389999999999999999999999999999999999987
Q ss_pred CCC
Q 013716 360 QTD 362 (437)
Q Consensus 360 ~~~ 362 (437)
...
T Consensus 86 ~~~ 88 (92)
T 2dgv_A 86 ASG 88 (92)
T ss_dssp CSS
T ss_pred CCC
Confidence 654
No 143
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.4e-18 Score=130.54 Aligned_cols=82 Identities=16% Similarity=0.298 Sum_probs=75.7
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||+.|.|+.|+|.|+
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 445799999999999999999999999999999998876643 899999999999999999999999999999999999
Q ss_pred cCCC
Q 013716 358 KPQT 361 (437)
Q Consensus 358 ~~~~ 361 (437)
.++.
T Consensus 101 ~~~~ 104 (106)
T 1p27_B 101 FVRG 104 (106)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8764
No 144
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.76 E-value=3.4e-18 Score=126.91 Aligned_cols=83 Identities=25% Similarity=0.442 Sum_probs=77.3
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
....++|||+|||+.+|+++|+++|++||.|..|+|+++ +++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 346789999999999999999999999999999999984 689999999999999999999999999999999999999
Q ss_pred ccccc
Q 013716 183 SETKN 187 (437)
Q Consensus 183 ~~~~~ 187 (437)
+++..
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 87653
No 145
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.76 E-value=3.7e-18 Score=125.63 Aligned_cols=80 Identities=19% Similarity=0.370 Sum_probs=74.0
Q ss_pred cceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCC---CccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG---KRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 282 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
.++|||+|||+.+++++|+++|++||.|..|.|+.+..+ .+|||||+|.+.++|.+|+..|||..|.|+.|+|.++.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 83 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVL 83 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECC
Confidence 479999999999999999999999999999999887643 38999999999999999999999999999999999997
Q ss_pred CCC
Q 013716 359 PQT 361 (437)
Q Consensus 359 ~~~ 361 (437)
++.
T Consensus 84 ~~~ 86 (88)
T 4a8x_A 84 APW 86 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 146
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=1.4e-18 Score=131.50 Aligned_cols=84 Identities=29% Similarity=0.457 Sum_probs=77.4
Q ss_pred CeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecccc
Q 013716 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (437)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~ 186 (437)
++|||+|||+++|+++|+++|++||.|..|+++++ ++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999876 6899999999999999999999999999999999998653
Q ss_pred ----------------ccccccCCC
Q 013716 187 ----------------NRLFIGNVP 195 (437)
Q Consensus 187 ----------------~~l~v~nl~ 195 (437)
.++||++|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 76 PRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCcccCCCCCccccCCCceecCCCC
Confidence 468888875
No 147
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.4e-18 Score=127.92 Aligned_cols=83 Identities=23% Similarity=0.489 Sum_probs=76.8
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
....++|||+|||+.+|+++|+++|++||.|..|+|+.+.. .++|||||+|.+.++|.+|+..|++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 34678999999999999999999999999999999998864 4899999999999999999999999999999999999
Q ss_pred ccccc
Q 013716 183 SETKN 187 (437)
Q Consensus 183 ~~~~~ 187 (437)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2cq3_A 90 ATARV 94 (103)
T ss_dssp CCSSC
T ss_pred cccCC
Confidence 98653
No 148
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=9.4e-19 Score=124.52 Aligned_cols=75 Identities=32% Similarity=0.675 Sum_probs=71.8
Q ss_pred eEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 108 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
+|||+|||+++|+++|+++|++||.|..|+++.++.+++++|||||+|.+.++|.+|++ +++..+.|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999999889999999999999999999996 9999999999999875
No 149
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=5.7e-18 Score=130.18 Aligned_cols=82 Identities=21% Similarity=0.386 Sum_probs=75.1
Q ss_pred cCcceEEEecCCCCCCHHHHH---HHHhccCCeeEEEeCCCCCC----C-ccEEEEEeCCHHHHHHHHHhcCCceeCCeE
Q 013716 280 SQVKALYVKNIPDNTSTEKIK---ELFQRHGEVTKVVMPPGKSG----K-RDFGFIHYAERSSALKAVKDTEKYEIDGQV 351 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~---~~f~~~G~v~~v~i~~~~~~----~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~ 351 (437)
...++|||+|||+.+++++|+ ++|++||.|..|.|++++.+ . +|||||+|.+.++|.+||..|||+.|.|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 345799999999999999999 99999999999999887753 2 699999999999999999999999999999
Q ss_pred EEEEeccCCC
Q 013716 352 LEVVLAKPQT 361 (437)
Q Consensus 352 l~v~~a~~~~ 361 (437)
|+|.|+.++.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998764
No 150
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.75 E-value=5.5e-18 Score=139.03 Aligned_cols=85 Identities=24% Similarity=0.379 Sum_probs=80.5
Q ss_pred CCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEe
Q 013716 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (437)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 181 (437)
.....++|||+|||+.+|+++|+++|++||.|..|+|+.++.++.++|||||+|.+.++|.+||+.|++..|.|+.|.|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 33467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccc
Q 013716 182 LSETK 186 (437)
Q Consensus 182 ~~~~~ 186 (437)
++.+.
T Consensus 115 ~a~~~ 119 (156)
T 1h2v_Z 115 WDAGF 119 (156)
T ss_dssp EESCC
T ss_pred ECCCC
Confidence 99764
No 151
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.7e-18 Score=131.81 Aligned_cols=83 Identities=31% Similarity=0.670 Sum_probs=78.8
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
..++|||+|||+.+|+++|+++|++||.|..|+++.++.+|+++|||||+|.+.++|.+|++.|++..|.|+.|+|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 34789999999999999999999999999999999998889999999999999999999999999999999999999998
Q ss_pred ccc
Q 013716 185 TKN 187 (437)
Q Consensus 185 ~~~ 187 (437)
+..
T Consensus 87 ~~~ 89 (104)
T 1p1t_A 87 SEK 89 (104)
T ss_dssp CTT
T ss_pred Ccc
Confidence 653
No 152
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.75 E-value=3.6e-18 Score=137.32 Aligned_cols=85 Identities=27% Similarity=0.489 Sum_probs=80.4
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
....++|||+|||+++|+++|+++|+.||.|..|+|++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccc
Q 013716 183 SETKN 187 (437)
Q Consensus 183 ~~~~~ 187 (437)
+.++.
T Consensus 119 a~~~~ 123 (139)
T 1u6f_A 119 AASGH 123 (139)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98653
No 153
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=9.1e-18 Score=129.76 Aligned_cols=84 Identities=24% Similarity=0.396 Sum_probs=76.0
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCee--------EEEeCCCCC-CC-ccEEEEEeCCHHHHHHHHHhcCCceeCC
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT--------KVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDG 349 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~--------~v~i~~~~~-~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g 349 (437)
...++|||+|||+.+++++|+++|++||.|. .|+|+.++. +. +|||||+|.+.++|.+||..|||+.|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 4558999999999999999999999999999 699998854 34 9999999999999999999999999999
Q ss_pred eEEEEEeccCCCCC
Q 013716 350 QVLEVVLAKPQTDK 363 (437)
Q Consensus 350 ~~l~v~~a~~~~~~ 363 (437)
++|+|.+++++...
T Consensus 93 ~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 93 SKLKVSLARKKPPM 106 (113)
T ss_dssp EECEEECSSCCCCS
T ss_pred CEEEEEECCCCCCC
Confidence 99999999876543
No 154
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.2e-18 Score=128.34 Aligned_cols=83 Identities=18% Similarity=0.405 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
....++|||+|||+.+|+++|+++|++||.|..|+|+++.. .++|||||+|.+.++|.+|+..|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 34678999999999999999999999999999999999864 4799999999999999999999999999999999999
Q ss_pred ccccc
Q 013716 183 SETKN 187 (437)
Q Consensus 183 ~~~~~ 187 (437)
+.++.
T Consensus 90 a~~~~ 94 (103)
T 2cqi_A 90 ATTPS 94 (103)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 98653
No 155
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2e-18 Score=130.11 Aligned_cols=81 Identities=25% Similarity=0.370 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
+...++|||+|||+++|+++|+++|+.||. +.|+|+.++ +++++|||||+|.+.++|.+|| .+|+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEE
Confidence 456789999999999999999999999994 599999998 7999999999999999999999 5799999999999988
Q ss_pred cccc
Q 013716 183 SETK 186 (437)
Q Consensus 183 ~~~~ 186 (437)
+...
T Consensus 89 ~~~~ 92 (102)
T 1wez_A 89 NSTA 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 7643
No 156
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.3e-17 Score=126.11 Aligned_cols=78 Identities=14% Similarity=0.285 Sum_probs=72.9
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCC-----eEEEE
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG-----QVLEV 354 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g-----~~l~v 354 (437)
...++|||+|||+.+++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||..||+..|.| ++|+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 44579999999999999999999999999999999887 799999999999999999999999999 99999
Q ss_pred EeccCCCC
Q 013716 355 VLAKPQTD 362 (437)
Q Consensus 355 ~~a~~~~~ 362 (437)
.++.++..
T Consensus 88 ~~a~~~~~ 95 (108)
T 1x4c_A 88 KVDGPRSP 95 (108)
T ss_dssp EESSCCSC
T ss_pred EeCCCCCC
Confidence 99987654
No 157
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.5e-18 Score=129.54 Aligned_cols=78 Identities=21% Similarity=0.331 Sum_probs=73.1
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 281 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
..++|||+|||+.+|+++|+++|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+. ++++.|+|+.|+|.++..
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 34799999999999999999999999999999999888765 9999999999999999999 899999999999999765
No 158
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.8e-18 Score=125.32 Aligned_cols=81 Identities=20% Similarity=0.435 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
....++|||+|||+++|+++|+++|+.| .|..|+|+++ .+|+++|||||+|.+.++|.+|+. |++..|.|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3467899999999999999999999999 9999999999 679999999999999999999998 999999999999999
Q ss_pred cccc
Q 013716 183 SETK 186 (437)
Q Consensus 183 ~~~~ 186 (437)
+.++
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 8764
No 159
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.75 E-value=2.6e-18 Score=135.62 Aligned_cols=84 Identities=25% Similarity=0.489 Sum_probs=79.5
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
....++|||+|||+.+|+++|+++|++||.|..|.|+.++.++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 98 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 98 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cccc
Q 013716 183 SETK 186 (437)
Q Consensus 183 ~~~~ 186 (437)
+.++
T Consensus 99 a~~~ 102 (126)
T 3ex7_B 99 CFVR 102 (126)
T ss_dssp SEES
T ss_pred ecCC
Confidence 8754
No 160
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.75 E-value=1.1e-18 Score=131.47 Aligned_cols=80 Identities=19% Similarity=0.260 Sum_probs=74.7
Q ss_pred cceEEEecCCC------CCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCC-eEE
Q 013716 282 VKALYVKNIPD------NTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDG-QVL 352 (437)
Q Consensus 282 ~~~l~V~nLp~------~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g-~~l 352 (437)
.++|||+|||+ .+++++|+++|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+..|||..|.| +.|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l 85 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRL 85 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEE
Confidence 47999999999 99999999999999999999999888743 9999999999999999999999999999 999
Q ss_pred EEEeccCCC
Q 013716 353 EVVLAKPQT 361 (437)
Q Consensus 353 ~v~~a~~~~ 361 (437)
+|.++.+..
T Consensus 86 ~V~~a~~~~ 94 (100)
T 3ns6_A 86 FLYTMKDVE 94 (100)
T ss_dssp EEEESHHHH
T ss_pred EEEECchhh
Confidence 999997653
No 161
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=2.5e-18 Score=128.35 Aligned_cols=80 Identities=24% Similarity=0.322 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCc-CCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCC--ccCCeEEEE
Q 013716 104 PNGSEVFIGGLPK-DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK--ELKGKTIRC 180 (437)
Q Consensus 104 ~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~--~~~g~~i~v 180 (437)
.++++|||+|||+ .+|+++|+++|++||.|.+|+|+++ +|||||+|.+.++|.+|++.|++. .|.|++|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 3678999999999 9999999999999999999999764 579999999999999999998864 499999999
Q ss_pred eeccccccc
Q 013716 181 SLSETKNRL 189 (437)
Q Consensus 181 ~~~~~~~~l 189 (437)
.+++....+
T Consensus 87 ~~a~~~~~~ 95 (102)
T 1x4d_A 87 HLSQKYKRI 95 (102)
T ss_dssp EEECCCTTS
T ss_pred EECCCCCCC
Confidence 999876554
No 162
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=8e-18 Score=124.24 Aligned_cols=77 Identities=23% Similarity=0.584 Sum_probs=71.7
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
...++|||+|||+.+++++|+++|++||.|..|.|. +|||||+|.+.++|.+|+..||+..|.|++|+|.|+++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 445899999999999999999999999999999997 48999999999999999999999999999999999987
Q ss_pred CCC
Q 013716 360 QTD 362 (437)
Q Consensus 360 ~~~ 362 (437)
+..
T Consensus 80 ~~~ 82 (90)
T 2dnq_A 80 KSK 82 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 163
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.75 E-value=1.4e-18 Score=130.92 Aligned_cols=82 Identities=23% Similarity=0.482 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecC-CCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEe
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDK-ESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~-~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 181 (437)
....++|||+|||+++|+++|+++|+.|| |..|+|++++ .+|+++|||||+|.+.++|.+|+ .|++..|.|+.|+|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 34678999999999999999999999999 9999999998 58999999999999999999999 899999999999999
Q ss_pred ecccc
Q 013716 182 LSETK 186 (437)
Q Consensus 182 ~~~~~ 186 (437)
++.++
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 98764
No 164
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.75 E-value=2.3e-17 Score=129.71 Aligned_cols=84 Identities=29% Similarity=0.442 Sum_probs=77.5
Q ss_pred ccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 279 ASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 279 ~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
....++|||+|||+.+++++|+++|++||.|..|.|+.+..+. +|||||+|.+.++|.+|+..|||..|.|+.|+|.||
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 3556899999999999999999999999999999999888555 999999999999999999999999999999999999
Q ss_pred cCCCC
Q 013716 358 KPQTD 362 (437)
Q Consensus 358 ~~~~~ 362 (437)
.+...
T Consensus 112 ~~~~~ 116 (124)
T 2kt5_A 112 ASQID 116 (124)
T ss_dssp CCTTC
T ss_pred CCCCC
Confidence 86544
No 165
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=9.3e-19 Score=125.32 Aligned_cols=76 Identities=33% Similarity=0.556 Sum_probs=73.0
Q ss_pred CeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
++|||+|||+++|+++|+++|++||.|..+++++++.+++++|||||+|.+.++|.+|++.++ ..+.|+.|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999999899999999999999999999999988 9999999999876
No 166
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.1e-18 Score=130.49 Aligned_cols=81 Identities=17% Similarity=0.272 Sum_probs=73.4
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcC--CceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE--KYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~i~g~~l~v~~a 357 (437)
.+.++|||+|||+.+++++|+++|++||.|..|+|+++ ||||||+|.+.++|.+|+..|+ +..|.|++|+|.|+
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 44579999999999999999999999999999999876 4999999999999999999887 46899999999999
Q ss_pred cCCCCCC
Q 013716 358 KPQTDKK 364 (437)
Q Consensus 358 ~~~~~~~ 364 (437)
+++..+.
T Consensus 105 ~~k~~~~ 111 (119)
T 2ad9_A 105 NHKELKT 111 (119)
T ss_dssp SSSSCCC
T ss_pred cCCCCCc
Confidence 8776553
No 167
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.75 E-value=5.1e-18 Score=129.54 Aligned_cols=82 Identities=20% Similarity=0.421 Sum_probs=75.6
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||..+++++|+.+|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|++|+|.++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 455899999999999999999999999999999998876544 899999999999999999999999999999999999
Q ss_pred cCCC
Q 013716 358 KPQT 361 (437)
Q Consensus 358 ~~~~ 361 (437)
+++.
T Consensus 104 ~~k~ 107 (108)
T 2jrs_A 104 TERT 107 (108)
T ss_dssp CSSC
T ss_pred ccCC
Confidence 8763
No 168
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=9.3e-18 Score=129.97 Aligned_cols=81 Identities=25% Similarity=0.407 Sum_probs=76.7
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
+..++|||+|||+.+|+++|+++|.+||.|..|+|+.++. ++++|||||+|.+.++|.+|++.|++..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKD-GKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTT-CSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-CCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 4578999999999999999999999999999999999874 999999999999999999999999999999999999998
Q ss_pred cc
Q 013716 184 ET 185 (437)
Q Consensus 184 ~~ 185 (437)
..
T Consensus 92 ~~ 93 (114)
T 2do0_A 92 ER 93 (114)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 169
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5e-18 Score=126.83 Aligned_cols=81 Identities=23% Similarity=0.280 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCcCCCHHHHH----HhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 013716 104 PNGSEVFIGGLPKDASEEDLR----DLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~----~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 179 (437)
...++|||+|||+.+|+++|+ ++|++||.|..|+|+.++.+ +|||||+|.+.++|.+|++.||+..|.|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 356799999999999999999 99999999999999998764 88999999999999999999999999999999
Q ss_pred Eeeccccc
Q 013716 180 CSLSETKN 187 (437)
Q Consensus 180 v~~~~~~~ 187 (437)
|.++++..
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99997653
No 170
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=4.7e-18 Score=130.64 Aligned_cols=86 Identities=21% Similarity=0.325 Sum_probs=78.6
Q ss_pred CCCCeEEEcCCCcCCCHHHHH---HhhcccCCeEEEEEeecCCCC---CcccEEEEEecCHHHHHHHHHHhCCCccCCeE
Q 013716 104 PNGSEVFIGGLPKDASEEDLR---DLCEPIGDVFEVRLMKDKESG---ESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~---~~f~~~G~i~~v~~~~~~~~~---~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 177 (437)
...++|||+|||+.+|+++|+ ++|++||.|..|+|+++..++ +++|||||+|.+.++|.+|++.||+..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 356789999999999999999 999999999999999887644 56699999999999999999999999999999
Q ss_pred EEEeeccccccc
Q 013716 178 IRCSLSETKNRL 189 (437)
Q Consensus 178 i~v~~~~~~~~l 189 (437)
|+|.++.++...
T Consensus 93 l~V~~a~~k~~~ 104 (111)
T 2cpi_A 93 LKASLGTTKYCS 104 (111)
T ss_dssp EEEESCCCCSCS
T ss_pred EEEEeccccccc
Confidence 999999887643
No 171
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=126.84 Aligned_cols=82 Identities=32% Similarity=0.597 Sum_probs=76.5
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
...++|||+|||+.+|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|+. ++..|.|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 456889999999999999999999999999999999999999999999999999999999997 567899999999999
Q ss_pred cccc
Q 013716 184 ETKN 187 (437)
Q Consensus 184 ~~~~ 187 (437)
.++.
T Consensus 91 ~~~~ 94 (103)
T 2cqg_A 91 NSKQ 94 (103)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 8653
No 172
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.6e-17 Score=125.50 Aligned_cols=80 Identities=25% Similarity=0.523 Sum_probs=71.4
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
...++|||+|||+.+++++|+++|++||.| +++.+..+. +|||||+|.+.++|.+|+..||++.|.|+.|+|.|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 89 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQG 89 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcC
Confidence 456899999999999999999999999987 556555555 8999999999999999999999999999999999998
Q ss_pred CCCC
Q 013716 359 PQTD 362 (437)
Q Consensus 359 ~~~~ 362 (437)
++..
T Consensus 90 ~~~~ 93 (101)
T 2fc9_A 90 PRGS 93 (101)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 7643
No 173
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.74 E-value=2.2e-18 Score=136.25 Aligned_cols=83 Identities=24% Similarity=0.275 Sum_probs=77.0
Q ss_pred CCCCCCeEEEcCCCcCCCHHHHHHhhcccCC---eEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 013716 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGD---VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (437)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~---i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 178 (437)
.....++|||+|||+++|+++|+++|++||. |..|+|++++. |+++|||||+|.+.++|.+||+ +++..|.||.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 3446789999999999999999999999999 89999999987 9999999999999999999997 99999999999
Q ss_pred EEeecccc
Q 013716 179 RCSLSETK 186 (437)
Q Consensus 179 ~v~~~~~~ 186 (437)
.|.++.++
T Consensus 118 ~V~~a~~~ 125 (136)
T 2hgl_A 118 EVFKSHRT 125 (136)
T ss_dssp EEEECCHH
T ss_pred EEEECChH
Confidence 99988643
No 174
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.6e-18 Score=133.06 Aligned_cols=80 Identities=31% Similarity=0.449 Sum_probs=76.8
Q ss_pred CCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 013716 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (437)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 185 (437)
.++|||+|||+.+|+++|+++|+.||.|..|+|+.++.+++++|||||+|.+.++|.+|+ .|++..|.|+.|.|.++.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 478999999999999999999999999999999999999999999999999999999999 9999999999999999875
Q ss_pred c
Q 013716 186 K 186 (437)
Q Consensus 186 ~ 186 (437)
+
T Consensus 104 ~ 104 (114)
T 2cq4_A 104 E 104 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 175
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.74 E-value=9.5e-18 Score=131.89 Aligned_cols=84 Identities=24% Similarity=0.371 Sum_probs=79.1
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
....++|||+|||+.+|+++|+++|++||.|..|+|+.+. +|+++|||||+|.+.++|.+|+..|++..|.|+.|+|.+
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 3467899999999999999999999999999999999998 799999999999999999999999999999999999999
Q ss_pred ccccc
Q 013716 183 SETKN 187 (437)
Q Consensus 183 ~~~~~ 187 (437)
+.+..
T Consensus 111 a~~~~ 115 (124)
T 2kt5_A 111 VASQI 115 (124)
T ss_dssp ECCTT
T ss_pred eCCCC
Confidence 97654
No 176
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.4e-18 Score=128.66 Aligned_cols=81 Identities=31% Similarity=0.383 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEE-EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFE-VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~-v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
...++|||+|||+++|+++|+++|++||.|.. |+|+.+ .+|+++|||||+|.+.++|.+||+. ++..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 35689999999999999999999999999987 888888 6799999999999999999999976 99999999999998
Q ss_pred cccc
Q 013716 183 SETK 186 (437)
Q Consensus 183 ~~~~ 186 (437)
+...
T Consensus 91 ~~~~ 94 (104)
T 1wg5_A 91 SSRA 94 (104)
T ss_dssp ECTT
T ss_pred CCHH
Confidence 8754
No 177
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.74 E-value=9.9e-19 Score=129.05 Aligned_cols=80 Identities=20% Similarity=0.287 Sum_probs=68.5
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccC--CeeEEEeCCCCCC-C-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHG--EVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G--~v~~v~i~~~~~~-~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
.+|||+|||+.+++++|+++|++|| .|..|+|+.++.+ . +|||||+|.+.++|.+|+..|||..|.|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 9999999888643 3 9999999999999999999999999999999999998
Q ss_pred CCCC
Q 013716 359 PQTD 362 (437)
Q Consensus 359 ~~~~ 362 (437)
++..
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7643
No 178
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=6.4e-18 Score=127.30 Aligned_cols=82 Identities=15% Similarity=0.259 Sum_probs=75.2
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCee-EEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeE----E
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT-KVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQV----L 352 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~-~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~----l 352 (437)
...++|||+|||+.+++++|+++|++||.|. .|+|++++.+. +|||||+|.+.++|.+|+..|||..|.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4568999999999999999999999999999 99999887443 899999999999999999999999999999 9
Q ss_pred EEEeccCCC
Q 013716 353 EVVLAKPQT 361 (437)
Q Consensus 353 ~v~~a~~~~ 361 (437)
+|.|+++..
T Consensus 87 ~v~~a~~~~ 95 (99)
T 2div_A 87 KLNYATYSG 95 (99)
T ss_dssp CEEETTCCS
T ss_pred EEeecCCCC
Confidence 999997653
No 179
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.4e-18 Score=132.99 Aligned_cols=81 Identities=22% Similarity=0.302 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCe-EEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDV-FEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i-~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
...++|||+|||+++|+++|+++|+.||.| ..|+|+.++ +++++|||||+|.+.++|.+||+. ++..|.|+.|.|.+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 467899999999999999999999999999 889999998 799999999999999999999966 99999999999999
Q ss_pred cccc
Q 013716 183 SETK 186 (437)
Q Consensus 183 ~~~~ 186 (437)
+.++
T Consensus 91 a~~~ 94 (114)
T 2cpy_A 91 VTLE 94 (114)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8754
No 180
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.74 E-value=9.3e-18 Score=128.35 Aligned_cols=79 Identities=27% Similarity=0.419 Sum_probs=74.5
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|+.|+|.|+.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 456899999999999999999999999999999999888666 9999999999999999999999999999999999985
No 181
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=6.6e-18 Score=127.14 Aligned_cols=85 Identities=35% Similarity=0.561 Sum_probs=78.3
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
.++.++|||+|||+.+|+++|+++|++||.|..|++.++ +|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 346789999999999999999999999999999999743 78999999999999999999999999999999999
Q ss_pred ccccccccccC
Q 013716 183 SETKNRLFIGN 193 (437)
Q Consensus 183 ~~~~~~l~v~n 193 (437)
+.++..+.+++
T Consensus 86 a~~~~~~~~g~ 96 (99)
T 2cpj_A 86 ACHSASLTSGP 96 (99)
T ss_dssp SSCCSCCCCCC
T ss_pred cCCCCCCCCCC
Confidence 99988877764
No 182
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=3.2e-17 Score=121.50 Aligned_cols=77 Identities=21% Similarity=0.415 Sum_probs=71.5
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
...++|||+|||+.+++++|+++|++||.|..|.|.+ +||||+|.+.++|.+|+..||++.|.|+.|+|.|+++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 4558999999999999999999999999999999973 5999999999999999999999999999999999987
Q ss_pred CCC
Q 013716 360 QTD 362 (437)
Q Consensus 360 ~~~ 362 (437)
+..
T Consensus 82 ~~~ 84 (92)
T 2dgt_A 82 RLR 84 (92)
T ss_dssp CCS
T ss_pred CCC
Confidence 644
No 183
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=128.25 Aligned_cols=82 Identities=22% Similarity=0.412 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
....++|||+|||+.+|+++|+++|++||.|..|+|..+ ++++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 346689999999999999999999999999999999654 56899999999999999999999999999999999999
Q ss_pred ccccc
Q 013716 183 SETKN 187 (437)
Q Consensus 183 ~~~~~ 187 (437)
++++.
T Consensus 96 a~~~~ 100 (109)
T 1x4a_A 96 PRSGR 100 (109)
T ss_dssp CCCCC
T ss_pred cccCC
Confidence 98653
No 184
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.74 E-value=3.4e-18 Score=132.78 Aligned_cols=81 Identities=26% Similarity=0.316 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCC---eEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGD---VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~---i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 180 (437)
...++|||+|||+++|+++|+++|+.||. |..|+|+.++. |+++|||||+|.+.++|.+||+ +++..|.|+.|.|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 46789999999999999999999999998 89999999987 9999999999999999999997 9999999999999
Q ss_pred eecccc
Q 013716 181 SLSETK 186 (437)
Q Consensus 181 ~~~~~~ 186 (437)
.++..+
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 988643
No 185
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.74 E-value=9.9e-18 Score=123.60 Aligned_cols=78 Identities=19% Similarity=0.465 Sum_probs=72.2
Q ss_pred cceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCC-CC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 282 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
.++|||+|||+.+++++|+++|++||.|..|.++.++. +. +|||||+|.+.++|.+|+ .|||..|.|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 47999999999999999999999999999999988753 33 899999999999999999 8999999999999999976
Q ss_pred C
Q 013716 360 Q 360 (437)
Q Consensus 360 ~ 360 (437)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 186
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.74 E-value=2e-17 Score=127.11 Aligned_cols=96 Identities=17% Similarity=0.348 Sum_probs=79.0
Q ss_pred CCCCCeeeecCCCCCCCCcccccCcceEEEecCCCC-CCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHH
Q 013716 258 DGNTPTISWADPKSTPDHSAAASQVKALYVKNIPDN-TSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSAL 336 (437)
Q Consensus 258 ~~~~~~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~-~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~ 336 (437)
.|..+.+..+.+..... .....++|||+|||+. +++++|+++|++||.|..|.| .+|||||+|.+.++|.
T Consensus 6 ~g~~~~~~~s~~~~~~~---~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~ 76 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKND---PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHAR 76 (110)
T ss_dssp CSCCCCCCCCCSCCSCC---CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHH
T ss_pred CCcccccccCCCCCCCC---CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHH
Confidence 34555555554433321 2234579999999999 999999999999999999999 3589999999999999
Q ss_pred HHHHhcCCceeCCeEEEEEeccCCCC
Q 013716 337 KAVKDTEKYEIDGQVLEVVLAKPQTD 362 (437)
Q Consensus 337 ~A~~~l~g~~i~g~~l~v~~a~~~~~ 362 (437)
+|+..||+..|.|+.|+|.|++++..
T Consensus 77 ~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 77 AAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp HHHHHHTTCEETTEECCEEESCCCCS
T ss_pred HHHHHcCCCEECCeEEEEEECCCCCC
Confidence 99999999999999999999975443
No 187
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.74 E-value=5.7e-18 Score=133.49 Aligned_cols=82 Identities=20% Similarity=0.345 Sum_probs=75.9
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+||..|||..|.|++|+|.|+
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 456899999999999999999999999999999999886543 999999999999999999999999999999999999
Q ss_pred cCCC
Q 013716 358 KPQT 361 (437)
Q Consensus 358 ~~~~ 361 (437)
.++.
T Consensus 124 ~~~~ 127 (129)
T 2kxn_B 124 ITKR 127 (129)
T ss_dssp SSSS
T ss_pred cCCC
Confidence 8764
No 188
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=7.3e-18 Score=127.45 Aligned_cols=77 Identities=19% Similarity=0.325 Sum_probs=72.4
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCCCC
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~ 362 (437)
++|||+|||+.+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+|+..|||..|.|+.|+|.+++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 47999999999999999999999999999999887 469999999999999999999999999999999999987654
No 189
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.3e-18 Score=129.41 Aligned_cols=83 Identities=23% Similarity=0.481 Sum_probs=76.8
Q ss_pred CCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEe
Q 013716 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (437)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 181 (437)
.....++|||+|||..+|+++|+++|++||.|..|+++.+. +.++|||||+|.+.++|.+|++.|++..+.|+.|+|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 102 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 102 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34467899999999999999999999999999999999885 4589999999999999999999999999999999999
Q ss_pred ecccc
Q 013716 182 LSETK 186 (437)
Q Consensus 182 ~~~~~ 186 (437)
++.++
T Consensus 103 ~a~~~ 107 (109)
T 2err_A 103 NATAR 107 (109)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 98764
No 190
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.3e-18 Score=133.13 Aligned_cols=82 Identities=12% Similarity=0.150 Sum_probs=75.5
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCe-eEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEV-TKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v-~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+++|+.||.| ..|+|+.++.+. +|||||+|.+.++|.+||.. |+..|.|+.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 445899999999999999999999999999 899999888666 99999999999999999987 999999999999999
Q ss_pred cCCCC
Q 013716 358 KPQTD 362 (437)
Q Consensus 358 ~~~~~ 362 (437)
.++..
T Consensus 92 ~~~~~ 96 (114)
T 2cpy_A 92 TLEDM 96 (114)
T ss_dssp CHHHH
T ss_pred CHHHH
Confidence 87653
No 191
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.2e-18 Score=130.23 Aligned_cols=86 Identities=26% Similarity=0.440 Sum_probs=79.0
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCC-eEEEEEe-ecCCCCCcccEEEEEecCHHHHHHHHHHhC--CCccCCeEE
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGD-VFEVRLM-KDKESGESKGFAFVSFRSKEFAKKAIDELH--SKELKGKTI 178 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~-i~~v~~~-~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--~~~~~g~~i 178 (437)
+...++|||+|||+.+|+++|+++|.+||. |..|.++ .+..+++++|||||+|.+.++|.+|+..|+ +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 446789999999999999999999999998 9999998 788889999999999999999999999996 589999999
Q ss_pred EEeecccccc
Q 013716 179 RCSLSETKNR 188 (437)
Q Consensus 179 ~v~~~~~~~~ 188 (437)
.|.++.++..
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987643
No 192
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=124.22 Aligned_cols=77 Identities=23% Similarity=0.363 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHh--CCCccCCeEEEEe
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL--HSKELKGKTIRCS 181 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l--~~~~~~g~~i~v~ 181 (437)
++.++|||+|||+.+|+++|+++|++||.|..|+++++ +|||||+|.+.++|.+|++.| ++..+.|++|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 86 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQ 86 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEE
Confidence 46789999999999999999999999999999998764 789999999999999999976 4677999999999
Q ss_pred ecccc
Q 013716 182 LSETK 186 (437)
Q Consensus 182 ~~~~~ 186 (437)
+++.+
T Consensus 87 ~a~~~ 91 (101)
T 2cq1_A 87 YSNHK 91 (101)
T ss_dssp ECSCS
T ss_pred EcCcc
Confidence 99854
No 193
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2e-17 Score=126.84 Aligned_cols=80 Identities=18% Similarity=0.413 Sum_probs=74.1
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
...++|||+|||..+++++|+.+|++||.|..|.|+.+ +|||||+|.+.++|.+|+..|||..|.|+.|+|.|+++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 34579999999999999999999999999999999887 48999999999999999999999999999999999987
Q ss_pred CCCC
Q 013716 360 QTDK 363 (437)
Q Consensus 360 ~~~~ 363 (437)
+...
T Consensus 99 ~~~~ 102 (109)
T 1x4g_A 99 SPDM 102 (109)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 6543
No 194
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.74 E-value=9.7e-18 Score=126.21 Aligned_cols=79 Identities=18% Similarity=0.351 Sum_probs=73.1
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeE--------EEeCCCCCC-C-ccEEEEEeCCHHHHHHHHHhcCCceeCC
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK--------VVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDG 349 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~--------v~i~~~~~~-~-~g~afV~f~~~~~A~~A~~~l~g~~i~g 349 (437)
...++|||+|||+.+++++|+++|++||.|.. |+|+.++.+ . +|||||+|.+.++|.+|+..|||..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45689999999999999999999999999999 999887653 3 9999999999999999999999999999
Q ss_pred eEEEEEecc
Q 013716 350 QVLEVVLAK 358 (437)
Q Consensus 350 ~~l~v~~a~ 358 (437)
+.|+|.+|+
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999984
No 195
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.74 E-value=1.3e-17 Score=126.82 Aligned_cols=77 Identities=18% Similarity=0.271 Sum_probs=70.4
Q ss_pred cceEEEecCCCCCCHHHHHHHHhccC-CeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCC
Q 013716 282 VKALYVKNIPDNTSTEKIKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (437)
Q Consensus 282 ~~~l~V~nLp~~~t~~~L~~~f~~~G-~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (437)
..+|||+|||+.+++++|+++|++|| .|..+.|.... ++|||||+|.+.++|.+||..|||..|.|++|+|.++...
T Consensus 28 ~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~--~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 28 RYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRD--FDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCS--SSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCC--CCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 47999999999999999999999999 89999996432 4799999999999999999999999999999999998643
No 196
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.74 E-value=2.3e-18 Score=136.68 Aligned_cols=83 Identities=22% Similarity=0.409 Sum_probs=78.1
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEE--EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCC----ccCCeEE
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFE--VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK----ELKGKTI 178 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~--v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~----~~~g~~i 178 (437)
..++|||+|||+++|+++|+++|++||.|.. |+|++++.+|+++|||||+|.+. +|.+|+..|++. .|.|+.|
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l 100 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTI 100 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEE
Confidence 5678999999999999999999999999977 99999999999999999999999 999999999999 9999999
Q ss_pred EEeecccccc
Q 013716 179 RCSLSETKNR 188 (437)
Q Consensus 179 ~v~~~~~~~~ 188 (437)
.|.++.+.+.
T Consensus 101 ~V~~a~~~~~ 110 (131)
T 2m2b_A 101 NVEFAKGSKR 110 (131)
T ss_dssp CCEECCCSCC
T ss_pred EEEECCCCCC
Confidence 9999987643
No 197
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=127.52 Aligned_cols=83 Identities=20% Similarity=0.430 Sum_probs=75.7
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+||.. |++.|.|+.|+|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 455899999999999999999999999999999999886543 89999999999999999998 999999999999999
Q ss_pred cCCCCC
Q 013716 358 KPQTDK 363 (437)
Q Consensus 358 ~~~~~~ 363 (437)
.++...
T Consensus 93 ~~~~~~ 98 (105)
T 2dh8_A 93 TPRGMQ 98 (105)
T ss_dssp CCSSCC
T ss_pred cCCCCC
Confidence 876543
No 198
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.1e-17 Score=123.84 Aligned_cols=78 Identities=23% Similarity=0.385 Sum_probs=72.4
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeC--CeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID--GQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~--g~~l~v~~a 357 (437)
.+.++|||+|||+.+++++|+++|++||.|..|.+..+ +|||||+|.+.++|.+|+..||+..|. |++|+|.|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a 90 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFA 90 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEEC
Confidence 34479999999999999999999999999999999876 489999999999999999999999999 999999999
Q ss_pred cCCC
Q 013716 358 KPQT 361 (437)
Q Consensus 358 ~~~~ 361 (437)
+++.
T Consensus 91 ~~~~ 94 (97)
T 1why_A 91 KSGP 94 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 199
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=2.9e-18 Score=129.83 Aligned_cols=84 Identities=26% Similarity=0.433 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCcC-CCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC--CCccCCeEEE
Q 013716 103 PPNGSEVFIGGLPKD-ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH--SKELKGKTIR 179 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~-~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--~~~~~g~~i~ 179 (437)
..++++|||+|||++ +|+++|+++|++||.|..|+|++ ++|||||+|.+.++|.+|++.|+ +..|.|++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 446789999999998 99999999999999999999963 47899999999999999999886 4569999999
Q ss_pred Eeecccccccccc
Q 013716 180 CSLSETKNRLFIG 192 (437)
Q Consensus 180 v~~~~~~~~l~v~ 192 (437)
|.+++.+..+..+
T Consensus 96 V~~a~~~~~~~~~ 108 (112)
T 1x4f_A 96 VDLSEKYKKLVSG 108 (112)
T ss_dssp EEEECSCSSSSCC
T ss_pred EEECccccccccC
Confidence 9999887766543
No 200
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.73 E-value=8.9e-19 Score=129.51 Aligned_cols=80 Identities=31% Similarity=0.654 Sum_probs=74.2
Q ss_pred CeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecccc
Q 013716 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSETK 186 (437)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~~ 186 (437)
++|||+|||+++|+++|+++|++||.|..|++++++.+++++|||||+|.+.+ |.+|+..||+..+.|+.|+|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999999999 99999999999999999999999765
Q ss_pred c
Q 013716 187 N 187 (437)
Q Consensus 187 ~ 187 (437)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 201
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=128.65 Aligned_cols=82 Identities=26% Similarity=0.566 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCcc--------CC
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL--------KG 175 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~--------~g 175 (437)
...++|||+|||+.+|+++|+++|++||.|..|+|++++ +++++|||||+|.+.++|.+|+..||+..| .+
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 356899999999999999999999999999999999998 799999999999999999999999999999 57
Q ss_pred eEEEEeecccc
Q 013716 176 KTIRCSLSETK 186 (437)
Q Consensus 176 ~~i~v~~~~~~ 186 (437)
++|.|.++.++
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999888754
No 202
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.73 E-value=1.3e-17 Score=129.89 Aligned_cols=79 Identities=22% Similarity=0.374 Sum_probs=73.0
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCC-C-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+++|++||.|..|+|+.++.+ . +|||||+|.+.++|.+|+..|||..|+|++|+|.|+
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 45689999999999999999999999999999999988653 3 999999999999999999999999999999999998
Q ss_pred c
Q 013716 358 K 358 (437)
Q Consensus 358 ~ 358 (437)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 4
No 203
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=122.43 Aligned_cols=79 Identities=14% Similarity=0.312 Sum_probs=73.7
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
...++|||+|||+.+++++|+++|+.| .|..|+|+.+..+. +|||||+|.+.++|.+|+. ||+..|.|+.|+|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 345799999999999999999999999 99999999886666 9999999999999999999 99999999999999997
Q ss_pred CC
Q 013716 359 PQ 360 (437)
Q Consensus 359 ~~ 360 (437)
++
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 65
No 204
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.3e-18 Score=130.90 Aligned_cols=81 Identities=28% Similarity=0.514 Sum_probs=77.0
Q ss_pred CCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 013716 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (437)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 185 (437)
.++|||+|||+.+|+++|+++|.+||.|..|+|+.++.+++++|||||+|.+.++|.+||+. ++..|.|+.|.|.++.+
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~ 105 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVA 105 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCC
Confidence 47899999999999999999999999999999999999999999999999999999999976 99999999999999986
Q ss_pred cc
Q 013716 186 KN 187 (437)
Q Consensus 186 ~~ 187 (437)
+.
T Consensus 106 ~~ 107 (116)
T 1x4b_A 106 RE 107 (116)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 205
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.2e-18 Score=130.89 Aligned_cols=82 Identities=11% Similarity=0.323 Sum_probs=75.4
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCC-C-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 281 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
..++|||+|||+.+++++|+++|+.||.|..|.|+.++.+ . +|||||+|.+.++|.+|| .||++.|.|+.|+|.+++
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3579999999999999999999999999999999988764 3 899999999999999999 899999999999999998
Q ss_pred CCCCC
Q 013716 359 PQTDK 363 (437)
Q Consensus 359 ~~~~~ 363 (437)
++..+
T Consensus 103 ~~~~~ 107 (114)
T 2cq4_A 103 AEKNR 107 (114)
T ss_dssp HHHHH
T ss_pred CCccC
Confidence 76543
No 206
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.8e-17 Score=124.67 Aligned_cols=79 Identities=27% Similarity=0.489 Sum_probs=73.3
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
...++|||+|||+.+++++|+++|++||.|..|++.++ +|||||+|.+.++|.+|+..|||..|.|++|+|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 88 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACH 88 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCC
Confidence 45579999999999999999999999999999999866 49999999999999999999999999999999999987
Q ss_pred CCC
Q 013716 360 QTD 362 (437)
Q Consensus 360 ~~~ 362 (437)
+..
T Consensus 89 ~~~ 91 (99)
T 2cpj_A 89 SAS 91 (99)
T ss_dssp CSC
T ss_pred CCC
Confidence 644
No 207
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=128.76 Aligned_cols=83 Identities=23% Similarity=0.453 Sum_probs=75.4
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+++|+.||.|..|.|+.++.+. +|||||+|.+.++|.+||.. +++.|.|+.|+|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 345899999999999999999999999999999999886533 89999999999999999997 999999999999999
Q ss_pred cCCCCC
Q 013716 358 KPQTDK 363 (437)
Q Consensus 358 ~~~~~~ 363 (437)
.++...
T Consensus 104 ~~~~~~ 109 (116)
T 1x4b_A 104 VAREES 109 (116)
T ss_dssp SSCCCC
T ss_pred CCCccC
Confidence 876543
No 208
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=126.57 Aligned_cols=81 Identities=25% Similarity=0.447 Sum_probs=72.4
Q ss_pred CcceEEEecCCCCC------CHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCe-EEE
Q 013716 281 QVKALYVKNIPDNT------STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ-VLE 353 (437)
Q Consensus 281 ~~~~l~V~nLp~~~------t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~-~l~ 353 (437)
..++|||+|||+.+ ++++|+.+|++||.|..|.|++....++|||||+|.+.++|.+|+..|||..|.|+ +|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~ 93 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 93 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEE
Confidence 35799999999999 78999999999999999999853333399999999999999999999999999998 999
Q ss_pred EEeccCCC
Q 013716 354 VVLAKPQT 361 (437)
Q Consensus 354 v~~a~~~~ 361 (437)
|.++....
T Consensus 94 V~~a~~~~ 101 (105)
T 2nlw_A 94 VNLFTDFD 101 (105)
T ss_dssp EECSCCCC
T ss_pred EEEcchHh
Confidence 99997543
No 209
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.4e-17 Score=123.59 Aligned_cols=82 Identities=26% Similarity=0.486 Sum_probs=73.9
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCC-CC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+||. +++.|+|+.|+|.|+
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 4457999999999999999999999999999999998865 34 9999999999999999998 478999999999999
Q ss_pred cCCCCC
Q 013716 358 KPQTDK 363 (437)
Q Consensus 358 ~~~~~~ 363 (437)
.++...
T Consensus 91 ~~~~~~ 96 (103)
T 2cqg_A 91 NSKQSQ 96 (103)
T ss_dssp CTTCCC
T ss_pred CCCCcC
Confidence 876543
No 210
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.3e-17 Score=125.17 Aligned_cols=82 Identities=21% Similarity=0.310 Sum_probs=74.5
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeE-EEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~-v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+++|++||.|.. |+|+.+..++ +|||||+|.+.++|.+||.. |+..|+||.|+|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 44579999999999999999999999999987 8888886666 99999999999999999997 999999999999999
Q ss_pred cCCCC
Q 013716 358 KPQTD 362 (437)
Q Consensus 358 ~~~~~ 362 (437)
.++..
T Consensus 92 ~~~~~ 96 (104)
T 1wg5_A 92 SRAEV 96 (104)
T ss_dssp CTTTS
T ss_pred CHHHH
Confidence 76543
No 211
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.73 E-value=5.9e-18 Score=128.69 Aligned_cols=80 Identities=19% Similarity=0.331 Sum_probs=74.2
Q ss_pred CCCeEEEcCCCcCC------CHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCe-E
Q 013716 105 NGSEVFIGGLPKDA------SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK-T 177 (437)
Q Consensus 105 ~~~~l~v~nLp~~~------t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~-~ 177 (437)
..++|||+|||+.+ |+++|+.+|++||.|..|+|+ +.+|+++|||||+|.+.++|.+|+..||+..|.|+ .
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 46899999999999 789999999999999999988 35699999999999999999999999999999998 9
Q ss_pred EEEeecccc
Q 013716 178 IRCSLSETK 186 (437)
Q Consensus 178 i~v~~~~~~ 186 (437)
|+|.++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999998754
No 212
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=134.69 Aligned_cols=81 Identities=33% Similarity=0.604 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
....++|||+|||+.+|+++|+++|++||.|..|+|++++.+++++|||||+|.+.++|.+|++.|++..|.|+.|+|.+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 139 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 139 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEe
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred c
Q 013716 183 S 183 (437)
Q Consensus 183 ~ 183 (437)
|
T Consensus 140 A 140 (140)
T 2ku7_A 140 A 140 (140)
T ss_dssp -
T ss_pred C
Confidence 5
No 213
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.8e-18 Score=128.37 Aligned_cols=78 Identities=26% Similarity=0.400 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC--CCccCCeEEEE
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH--SKELKGKTIRC 180 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~--~~~~~g~~i~v 180 (437)
.+++++|||+|||+++|+++|+++|++||.|..|+|+++ +|||||+|.+.++|.+|++.|+ +..|.|++|.|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 346789999999999999999999999999999999864 7899999999999999999887 46899999999
Q ss_pred eecccc
Q 013716 181 SLSETK 186 (437)
Q Consensus 181 ~~~~~~ 186 (437)
.+++.+
T Consensus 102 ~~a~~k 107 (119)
T 2ad9_A 102 QFSNHK 107 (119)
T ss_dssp EECSSS
T ss_pred EEccCC
Confidence 999765
No 214
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.73 E-value=4.7e-18 Score=128.05 Aligned_cols=79 Identities=22% Similarity=0.435 Sum_probs=71.7
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCC--CCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEe
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK--SGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~--~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 356 (437)
...++|||+|||+.+++++|+++|+.|| |..|+|+.++ .+. +|||||+|.+.++|.+|+ .|||..|+|+.|+|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 4558999999999999999999999999 9999999886 344 999999999999999999 8999999999999999
Q ss_pred ccCC
Q 013716 357 AKPQ 360 (437)
Q Consensus 357 a~~~ 360 (437)
++++
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 9865
No 215
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.9e-17 Score=121.50 Aligned_cols=77 Identities=40% Similarity=0.618 Sum_probs=71.1
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcc--CCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRH--GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~--G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+.+|++| |.|..|.+. +|||||+|.+.++|.+|+..|||..|.|++|+|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 456899999999999999999999999 999999875 479999999999999999999999999999999999
Q ss_pred cCCCC
Q 013716 358 KPQTD 362 (437)
Q Consensus 358 ~~~~~ 362 (437)
+++..
T Consensus 87 ~~~~~ 91 (99)
T 2cpd_A 87 KPVDK 91 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87643
No 216
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.73 E-value=2.8e-17 Score=125.67 Aligned_cols=83 Identities=20% Similarity=0.442 Sum_probs=73.4
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCC-C-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+.+|+.||.|..|+|+.++.+ . +|||||+|.+.++|.+|+..+ +..|+|+.|+|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 44589999999999999999999999999999999988753 3 999999999999999999986 59999999999999
Q ss_pred cCCCCC
Q 013716 358 KPQTDK 363 (437)
Q Consensus 358 ~~~~~~ 363 (437)
.++..+
T Consensus 102 ~~~~~~ 107 (109)
T 2rs2_A 102 FPRRAQ 107 (109)
T ss_dssp CCCCCC
T ss_pred cCCCCC
Confidence 876543
No 217
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=8.2e-18 Score=127.72 Aligned_cols=78 Identities=26% Similarity=0.347 Sum_probs=73.1
Q ss_pred CCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeeccc
Q 013716 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSET 185 (437)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~~ 185 (437)
.++|||+|||+++|+++|+++|+.| .|..|+|+.++. |+++|||||+|.+.++|.+|| .+++..|.||.|.|..+..
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 3689999999999999999999999 899999999976 999999999999999999999 7899999999999988865
Q ss_pred c
Q 013716 186 K 186 (437)
Q Consensus 186 ~ 186 (437)
.
T Consensus 93 ~ 93 (109)
T 2dnn_A 93 R 93 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 218
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.73 E-value=9.7e-18 Score=133.03 Aligned_cols=82 Identities=18% Similarity=0.289 Sum_probs=74.8
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeE--EEeCCCCC-CC-ccEEEEEeCCHHHHHHHHHhcCCc----eeCCeE
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK--VVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKY----EIDGQV 351 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~--v~i~~~~~-~~-~g~afV~f~~~~~A~~A~~~l~g~----~i~g~~ 351 (437)
...++|||+|||+.+|+++|+++|++||.|.. |+|++++. +. ||||||+|.+. +|.+|+..|||. .|.|+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~ 99 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKT 99 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEE
Confidence 45689999999999999999999999999976 99998884 34 99999999999 999999999999 999999
Q ss_pred EEEEeccCCCC
Q 013716 352 LEVVLAKPQTD 362 (437)
Q Consensus 352 l~v~~a~~~~~ 362 (437)
|+|.|++++..
T Consensus 100 l~V~~a~~~~~ 110 (131)
T 2m2b_A 100 INVEFAKGSKR 110 (131)
T ss_dssp CCCEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999987644
No 219
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.73 E-value=2.6e-18 Score=136.69 Aligned_cols=83 Identities=29% Similarity=0.464 Sum_probs=79.0
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
...++|||+|||+.+|+++|+++|++||.|..|+|+.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|.|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 35689999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred ccc
Q 013716 184 ETK 186 (437)
Q Consensus 184 ~~~ 186 (437)
++.
T Consensus 125 ~~~ 127 (135)
T 2lea_A 125 RYG 127 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 220
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=2.9e-18 Score=123.87 Aligned_cols=73 Identities=19% Similarity=0.382 Sum_probs=67.8
Q ss_pred CCeEEEcCCCcCC------CHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCe-EE
Q 013716 106 GSEVFIGGLPKDA------SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGK-TI 178 (437)
Q Consensus 106 ~~~l~v~nLp~~~------t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~-~i 178 (437)
+++|||+|||+.+ |+++|+++|++||.|..|+++ +.+|+++|||||+|.+.++|.+|++.||+..+.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 4789999999999 789999999999999999987 35699999999999999999999999999999999 88
Q ss_pred EE
Q 013716 179 RC 180 (437)
Q Consensus 179 ~v 180 (437)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 66
No 221
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.72 E-value=1.1e-17 Score=131.57 Aligned_cols=81 Identities=22% Similarity=0.489 Sum_probs=77.2
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
..++|||+|||+++|+++|+++|++||.|..|++++++.+++++|||||+|.+.++|.+|+ .|++..|.|+.|.|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3589999999999999999999999999999999999889999999999999999999999 899999999999999987
Q ss_pred cc
Q 013716 185 TK 186 (437)
Q Consensus 185 ~~ 186 (437)
+.
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 222
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=129.26 Aligned_cols=82 Identities=18% Similarity=0.353 Sum_probs=72.2
Q ss_pred cCcceEEEecCCCCCCHHHHH----HHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013716 280 SQVKALYVKNIPDNTSTEKIK----ELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~----~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 355 (437)
.+.++|||+|||+.+++++|+ ++|++||.|..|.+... ...||||||+|.+.++|.+|+..|||..|.|++|+|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~-~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS-DDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC-CSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC-CCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 345799999999999999876 69999999999988653 1238999999999999999999999999999999999
Q ss_pred eccCCCC
Q 013716 356 LAKPQTD 362 (437)
Q Consensus 356 ~a~~~~~ 362 (437)
|++.+..
T Consensus 106 ~a~~~~~ 112 (127)
T 2a3j_A 106 FSETPQS 112 (127)
T ss_dssp ECCCCCH
T ss_pred EccCcch
Confidence 9986643
No 223
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.1e-17 Score=125.19 Aligned_cols=83 Identities=25% Similarity=0.382 Sum_probs=74.4
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhccCC-eeEEEeC-CCCCC-C-ccEEEEEeCCHHHHHHHHHhcC--CceeCCeEEEE
Q 013716 281 QVKALYVKNIPDNTSTEKIKELFQRHGE-VTKVVMP-PGKSG-K-RDFGFIHYAERSSALKAVKDTE--KYEIDGQVLEV 354 (437)
Q Consensus 281 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~-v~~v~i~-~~~~~-~-~g~afV~f~~~~~A~~A~~~l~--g~~i~g~~l~v 354 (437)
..++|||+|||+.+++++|+++|++||. |..|.|+ .++.+ . +|||||+|.+.++|.+|+..|| +..|.|+.|+|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V 86 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAV 86 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEE
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEE
Confidence 4579999999999999999999999998 9999998 55553 3 8999999999999999999996 58999999999
Q ss_pred EeccCCCCC
Q 013716 355 VLAKPQTDK 363 (437)
Q Consensus 355 ~~a~~~~~~ 363 (437)
.|+.++...
T Consensus 87 ~~a~~~~~~ 95 (109)
T 2dis_A 87 DWAEPEIDV 95 (109)
T ss_dssp EESCSSCST
T ss_pred EEcCCCCCc
Confidence 999877553
No 224
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.6e-17 Score=120.11 Aligned_cols=77 Identities=21% Similarity=0.455 Sum_probs=71.3
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
...++|||+|||+.+++++|+.+|++||.|..|.|.+ +||||+|.+.++|.+|+..|||..|.|++|+|.++++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 4457999999999999999999999999999999974 5899999999999999999999999999999999987
Q ss_pred CCC
Q 013716 360 QTD 362 (437)
Q Consensus 360 ~~~ 362 (437)
+..
T Consensus 81 ~~~ 83 (90)
T 2dnp_A 81 GQK 83 (90)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 225
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.3e-17 Score=125.65 Aligned_cols=79 Identities=15% Similarity=0.302 Sum_probs=71.5
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
...++|||+|||+.+|+++|+++|++|| +..|+|+.++.++ +|||||+|.+.++|.+||. +|++.|+||.|+|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 4457999999999999999999999999 4599998888666 9999999999999999995 79999999999999986
Q ss_pred CC
Q 013716 359 PQ 360 (437)
Q Consensus 359 ~~ 360 (437)
+.
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 226
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.72 E-value=2.8e-17 Score=120.55 Aligned_cols=77 Identities=26% Similarity=0.525 Sum_probs=70.3
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCC-CC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+. ++++.|+|+.|+|.+|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 4557999999999999999999999999999999988765 33 9999999999999999996 5888999999999986
No 227
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.3e-17 Score=120.39 Aligned_cols=75 Identities=23% Similarity=0.469 Sum_probs=70.3
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhc-CCceeCCeEEEEEecc
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT-EKYEIDGQVLEVVLAK 358 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l-~g~~i~g~~l~v~~a~ 358 (437)
...++|||+|||..+++++|+++|++||.|..|.+.++ +|||||+|.+.++|.+|+..| ++..|.|++|+|.|++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 45589999999999999999999999999999999875 499999999999999999999 9999999999999984
No 228
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.3e-17 Score=125.24 Aligned_cols=77 Identities=14% Similarity=0.275 Sum_probs=72.1
Q ss_pred cceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCC
Q 013716 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (437)
Q Consensus 282 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (437)
..+|||+|||+.+++++|+++|+.| .|..|+|+.++.++ +|||||+|.+.++|.+|| .+|++.|+||.|.|..+.++
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 4799999999999999999999999 89999999888777 999999999999999999 68999999999999998654
No 229
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=7.1e-18 Score=127.67 Aligned_cols=80 Identities=16% Similarity=0.262 Sum_probs=71.4
Q ss_pred cCcceEEEecCCCC-CCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcC--CceeCCeEEEEEe
Q 013716 280 SQVKALYVKNIPDN-TSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE--KYEIDGQVLEVVL 356 (437)
Q Consensus 280 ~~~~~l~V~nLp~~-~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~--g~~i~g~~l~v~~ 356 (437)
.+.++|||+|||+. +++++|+++|++||.|..|+|++. ||||||+|.+.++|.+|+..|+ +..|.||+|+|.|
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM----KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 45689999999998 999999999999999999999764 4999999999999999999886 4569999999999
Q ss_pred ccCCCCC
Q 013716 357 AKPQTDK 363 (437)
Q Consensus 357 a~~~~~~ 363 (437)
++.+...
T Consensus 99 a~~~~~~ 105 (112)
T 1x4f_A 99 SEKYKKL 105 (112)
T ss_dssp ECSCSSS
T ss_pred Ccccccc
Confidence 9766543
No 230
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=127.38 Aligned_cols=83 Identities=25% Similarity=0.524 Sum_probs=76.0
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 281 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
..++|||+|||+.+++++|+++|++||.|..|.|+.++.+. +|||||+|.+.++|.+|+..|||..|.|+.|+|.|+.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 34799999999999999999999999999999998876443 8999999999999999999999999999999999998
Q ss_pred CCCCC
Q 013716 359 PQTDK 363 (437)
Q Consensus 359 ~~~~~ 363 (437)
++..+
T Consensus 87 ~~~~~ 91 (104)
T 1p1t_A 87 SEKNK 91 (104)
T ss_dssp CTTHH
T ss_pred Cccch
Confidence 76543
No 231
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=124.84 Aligned_cols=81 Identities=28% Similarity=0.524 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
+...++|||+|||+.+|+++|+++|++||.| +++.+ .+++++|||||+|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 3467899999999999999999999999977 56666 5699999999999999999999999999999999999999
Q ss_pred ccccc
Q 013716 183 SETKN 187 (437)
Q Consensus 183 ~~~~~ 187 (437)
+.++.
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 98653
No 232
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.72 E-value=8.8e-18 Score=119.43 Aligned_cols=73 Identities=25% Similarity=0.472 Sum_probs=68.2
Q ss_pred eEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCC-CC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 284 ~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
+|||+|||+.+++++|+++|++||.|..|.++.++. +. +|||||+|.+.++|.+|+. ||++.|+|++|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999998874 33 9999999999999999998 9999999999999986
No 233
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.72 E-value=2.9e-18 Score=135.99 Aligned_cols=80 Identities=14% Similarity=0.303 Sum_probs=73.0
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
...++|||+|||+.+|+++|+++|++|| |+.|+|+.++.++ +|||||+|.+.++|.+|| .+|+..|.||.|+|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 4457999999999999999999999999 7799999988776 999999999999999999 789999999999999987
Q ss_pred CCC
Q 013716 359 PQT 361 (437)
Q Consensus 359 ~~~ 361 (437)
+..
T Consensus 122 ~~~ 124 (139)
T 2hgn_A 122 TTG 124 (139)
T ss_dssp CSC
T ss_pred CCC
Confidence 553
No 234
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=135.45 Aligned_cols=81 Identities=16% Similarity=0.250 Sum_probs=73.7
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhccC--CeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEe
Q 013716 281 QVKALYVKNIPDNTSTEKIKELFQRHG--EVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (437)
Q Consensus 281 ~~~~l~V~nLp~~~t~~~L~~~f~~~G--~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 356 (437)
..++|||+|||+.+++++|+++|+.|| .|..|+|+.++.+. +|||||+|.+.++|.+||..|||..|.|+.|+|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 347999999999999999999999999 99999999886443 99999999999999999999999999999999999
Q ss_pred ccCCC
Q 013716 357 AKPQT 361 (437)
Q Consensus 357 a~~~~ 361 (437)
+.++.
T Consensus 134 a~~~~ 138 (156)
T 3n9u_C 134 ATRQN 138 (156)
T ss_dssp CCHHH
T ss_pred cCCCc
Confidence 97643
No 235
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4e-17 Score=126.61 Aligned_cols=82 Identities=23% Similarity=0.414 Sum_probs=71.7
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCe----eEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEV----TKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v----~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 355 (437)
...++|||+|||+.+++++|+++|++||.| ..+.+. ....+|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 456899999999999999999999999998 555555 22237999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 013716 356 LAKPQTDK 363 (437)
Q Consensus 356 ~a~~~~~~ 363 (437)
|++++..+
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99876554
No 236
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=2e-17 Score=124.59 Aligned_cols=78 Identities=24% Similarity=0.271 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCC--ccCCeEEEEe
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSK--ELKGKTIRCS 181 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~--~~~g~~i~v~ 181 (437)
++.++|||+|||+.+|+++|+++|++||.|..|+++++ ||||||+|.+.++|.+|++.|++. .+.|+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 46789999999999999999999999999999998753 789999999999999999988654 5899999999
Q ss_pred eccccc
Q 013716 182 LSETKN 187 (437)
Q Consensus 182 ~~~~~~ 187 (437)
++..+.
T Consensus 87 ~a~~~~ 92 (104)
T 1wex_A 87 YSTSKR 92 (104)
T ss_dssp ECSSSS
T ss_pred EccCcc
Confidence 998653
No 237
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=129.57 Aligned_cols=83 Identities=20% Similarity=0.406 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCcCCCHHHHH----HhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 013716 103 PPNGSEVFIGGLPKDASEEDLR----DLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~----~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 178 (437)
.++.++|||+|||+.+++++|+ ++|++||.|..|.+.+ +++++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 3457899999999999999876 6999999999998754 48899999999999999999999999999999999
Q ss_pred EEeecccccc
Q 013716 179 RCSLSETKNR 188 (437)
Q Consensus 179 ~v~~~~~~~~ 188 (437)
+|.++..+..
T Consensus 103 ~V~~a~~~~~ 112 (127)
T 2a3j_A 103 VITFSETPQS 112 (127)
T ss_dssp EEEECCCCCH
T ss_pred EEEEccCcch
Confidence 9999987643
No 238
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.3e-18 Score=134.44 Aligned_cols=82 Identities=23% Similarity=0.325 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
...++|||+|||+++|+++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|.+||+ ||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 456899999999999999999999999999887777777789999999999999999999998 9999999999999998
Q ss_pred ccc
Q 013716 184 ETK 186 (437)
Q Consensus 184 ~~~ 186 (437)
..+
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 754
No 239
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.3e-17 Score=125.32 Aligned_cols=81 Identities=20% Similarity=0.248 Sum_probs=71.6
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCC-CC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+++|++||.|..+.++.++. +. +|||||+|.+.++|.+|+..|||..|.|++|+|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 3457899999999999999999999999998766655443 33 899999999999999999999999999999999998
Q ss_pred cCC
Q 013716 358 KPQ 360 (437)
Q Consensus 358 ~~~ 360 (437)
..+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 240
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=1.3e-17 Score=126.88 Aligned_cols=82 Identities=22% Similarity=0.356 Sum_probs=72.9
Q ss_pred CCCCCCCeEEEcCCCcCCCHHHHHHhhcccC-CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 013716 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIG-DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (437)
Q Consensus 101 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 179 (437)
..++..++|||+|||+++|+++|+++|++|| .|..+.+.. ++++|||||+|.+.++|.+|++.||+..|.|+.|+
T Consensus 23 ~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~ 98 (111)
T 2jvr_A 23 KLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVIT 98 (111)
T ss_dssp --CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 4556778999999999999999999999999 899998853 35799999999999999999999999999999999
Q ss_pred Eeecccc
Q 013716 180 CSLSETK 186 (437)
Q Consensus 180 v~~~~~~ 186 (437)
|.++...
T Consensus 99 V~~a~~~ 105 (111)
T 2jvr_A 99 VERDDNP 105 (111)
T ss_dssp EEESCC-
T ss_pred EEECCCC
Confidence 9998643
No 241
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.72 E-value=2.7e-17 Score=120.70 Aligned_cols=84 Identities=26% Similarity=0.383 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
...++|||+|||+.+|+++|+++|++| .|..+++. +++|||||+|.+.++|.+|++.||+..+.|+.|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 456899999999999999999999999 99999884 57899999999999999999999999999999999999
Q ss_pred cccccccccCC
Q 013716 184 ETKNRLFIGNV 194 (437)
Q Consensus 184 ~~~~~l~v~nl 194 (437)
..+..+.+.|.
T Consensus 76 ~~~~~~~~~n~ 86 (88)
T 1wg1_A 76 PTDALLCSGPS 86 (88)
T ss_dssp CCCCCCSCCCT
T ss_pred CCCceEecCCC
Confidence 88877777653
No 242
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.71 E-value=4.3e-18 Score=121.09 Aligned_cols=75 Identities=25% Similarity=0.539 Sum_probs=71.1
Q ss_pred eEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 108 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
+|||+|||+++|+++|+++|++||.|..|++++++.+++++|||||+|.+.++|.+|++ +++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 59999999999999999999999999999999999999999999999999999999996 5899999999998764
No 243
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.5e-17 Score=124.47 Aligned_cols=82 Identities=24% Similarity=0.467 Sum_probs=74.8
Q ss_pred hhcCCCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeE
Q 013716 98 QLLALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177 (437)
Q Consensus 98 ~~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 177 (437)
.....+...++|||+|||..+|+++|+.+|++||.|..|++. +++|||||+|.+.++|.+|+..||+..|.|+.
T Consensus 19 ~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 92 (101)
T 2la4_A 19 IIRSAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRN 92 (101)
T ss_dssp HHTTSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred hhhcCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 344556678999999999999999999999999999999996 46899999999999999999999999999999
Q ss_pred EEEeeccc
Q 013716 178 IRCSLSET 185 (437)
Q Consensus 178 i~v~~~~~ 185 (437)
|+|.++++
T Consensus 93 l~V~~a~~ 100 (101)
T 2la4_A 93 LRTGWGKE 100 (101)
T ss_dssp CCCCBCCC
T ss_pred EEEEeccC
Confidence 99999875
No 244
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.71 E-value=3.7e-18 Score=130.27 Aligned_cols=82 Identities=15% Similarity=0.219 Sum_probs=76.1
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCC---eEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGD---VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~---i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 179 (437)
....++|||+|||+++|+++|+++|+.||. |..|+|+.++. |+++|||||+|.+.++|.+||. +++..|.|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 346789999999999999999999999998 89999999987 9999999999999999999997 999999999999
Q ss_pred Eeecccc
Q 013716 180 CSLSETK 186 (437)
Q Consensus 180 v~~~~~~ 186 (437)
|.++.++
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9988643
No 245
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.71 E-value=4.6e-17 Score=132.58 Aligned_cols=117 Identities=15% Similarity=0.263 Sum_probs=106.4
Q ss_pred CCcccEEEEEecCHHHHHHHHHHh-CCCccCCeEEEEeeccc----------------------cccccccCCCCCCCHH
Q 013716 145 GESKGFAFVSFRSKEFAKKAIDEL-HSKELKGKTIRCSLSET----------------------KNRLFIGNVPKNWTED 201 (437)
Q Consensus 145 ~~~~g~afV~f~~~~~A~~a~~~l-~~~~~~g~~i~v~~~~~----------------------~~~l~v~nl~~~~~~~ 201 (437)
...+|+++|+|.+.+.|++|++.+ |+..+.| .+.+.++.. .++|||+|||+.++++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~ 88 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKT 88 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHH
Confidence 467999999999999999999999 9999999 999988653 2689999999999999
Q ss_pred HHHHHHHhhCCceeEEEEeeCCCCCCCCccEEEEEecChHHHHHHHHHHhccCcccCCCCCeeeecCCCC
Q 013716 202 EFRKVIEDVGPGVETIELIKDPQNPSRNRGFSFVLYYNNACADYSRQKMLNANFKLDGNTPTISWADPKS 271 (437)
Q Consensus 202 ~l~~~f~~~g~~i~~~~~~~d~~~~~~~~g~~fv~f~~~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~ 271 (437)
+|+++|+.||. |..++++++ ++|||||+|.+.++|..|+..|++. .+.|+.+.|.|+.++.
T Consensus 89 ~l~~~F~~~G~-i~~v~i~~~------~~g~afV~f~~~~~a~~A~~~l~g~--~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 89 ELERAFGYYGP-LRSVWVARN------PPGFAFVEFEDPRDAADAVRELDGR--TLCGCRVRVELSNGEK 149 (150)
T ss_dssp HHHHHHHHHSC-EEEEEECSS------SCSEEEEEESSHHHHHHHHHHHSSS--CSSSSCCEEEECCCCC
T ss_pred HHHHHHHhhCC-EEEEEEeeC------CCcEEEEEECCHHHHHHHHHHcCCC--EECCeEEEEEEcCCCC
Confidence 99999999998 999999876 5889999999999999999999875 5789999999998763
No 246
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.71 E-value=6.7e-17 Score=120.75 Aligned_cols=75 Identities=21% Similarity=0.395 Sum_probs=70.2
Q ss_pred cCcceEEEecCCC-CCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 280 SQVKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 280 ~~~~~l~V~nLp~-~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
...++|||+|||+ .+++++|+.+|++||.|..|.|. +|||||+|.+.++|.+|+..|||..|.|++|+|.|++
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 4568999999998 99999999999999999999994 5899999999999999999999999999999999997
Q ss_pred CC
Q 013716 359 PQ 360 (437)
Q Consensus 359 ~~ 360 (437)
.+
T Consensus 94 ~~ 95 (97)
T 2xnq_A 94 SN 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 247
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4e-17 Score=120.46 Aligned_cols=77 Identities=35% Similarity=0.628 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
+...++|||+|||+++|+++|+++|++||.|..|+++ +|||||+|.+.++|.+|+..||+..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999999986 57999999999999999999999999999999999
Q ss_pred ccccc
Q 013716 183 SETKN 187 (437)
Q Consensus 183 ~~~~~ 187 (437)
+.++.
T Consensus 77 a~~~~ 81 (90)
T 2dnq_A 77 SKNKS 81 (90)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98654
No 248
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4e-17 Score=123.63 Aligned_cols=82 Identities=32% Similarity=0.573 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
....++|||+|||+.+|+++|+++|+.|+ .|+++.++.+++++|||||+|.+.++|.+|++.|++..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDW 88 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 44678999999999999999999999874 678888888899999999999999999999999999999999999999
Q ss_pred ccccc
Q 013716 183 SETKN 187 (437)
Q Consensus 183 ~~~~~ 187 (437)
++++.
T Consensus 89 a~~~~ 93 (102)
T 2fc8_A 89 AKPKG 93 (102)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98654
No 249
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.71 E-value=3.8e-17 Score=128.49 Aligned_cols=80 Identities=20% Similarity=0.455 Sum_probs=72.9
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCC-CC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 281 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
..++|||+|||+.+++++|+++|++||.|..|.|+.++. +. +|||||+|.+.++|.+|+ .|||+.|.|+.|+|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 357999999999999999999999999999999988753 33 899999999999999999 799999999999999997
Q ss_pred CCC
Q 013716 359 PQT 361 (437)
Q Consensus 359 ~~~ 361 (437)
+..
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 250
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.71 E-value=2.3e-17 Score=128.01 Aligned_cols=81 Identities=14% Similarity=0.221 Sum_probs=74.9
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCC---eeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGE---VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~---v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 355 (437)
...++|||+|||+.+|+++|+++|+.||. |..|+|+.++.++ +|||||+|.+.++|.+||. ||++.|+||.|+|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 34578999999999999999999999999 8999999887777 9999999999999999999 99999999999999
Q ss_pred eccCCC
Q 013716 356 LAKPQT 361 (437)
Q Consensus 356 ~a~~~~ 361 (437)
++..+.
T Consensus 94 ~a~~~~ 99 (118)
T 2db1_A 94 KSHRTE 99 (118)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 997654
No 251
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.71 E-value=9.8e-18 Score=121.04 Aligned_cols=73 Identities=26% Similarity=0.524 Sum_probs=66.0
Q ss_pred ceEEEecCCCCC------CHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCe-EEEEE
Q 013716 283 KALYVKNIPDNT------STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ-VLEVV 355 (437)
Q Consensus 283 ~~l~V~nLp~~~------t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~-~l~v~ 355 (437)
++|||+|||+.+ ++++|+++|++||.|..|.|++....++|||||+|.+.++|.+|+..|||..|.|+ +|+|+
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V~ 81 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVN 81 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEeC
Confidence 689999999999 77999999999999999999854333399999999999999999999999999999 88763
No 252
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.8e-17 Score=123.90 Aligned_cols=77 Identities=21% Similarity=0.376 Sum_probs=70.9
Q ss_pred cCcceEEEecCCC-CCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 280 SQVKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 280 ~~~~~l~V~nLp~-~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
...++|||+|||+ .+++++|+.+|++||.|..|.|. +|||||+|.+.++|.+|+..|||..|.|++|+|.|++
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 81 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSS 81 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcC
Confidence 4558999999998 99999999999999999999994 5899999999999999999999999999999999998
Q ss_pred CCCC
Q 013716 359 PQTD 362 (437)
Q Consensus 359 ~~~~ 362 (437)
++..
T Consensus 82 ~~~~ 85 (96)
T 2kvi_A 82 SNAR 85 (96)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 6644
No 253
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.71 E-value=3.5e-17 Score=124.78 Aligned_cols=77 Identities=26% Similarity=0.448 Sum_probs=71.6
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
...++|||+|||+.+++++|+.+|++||.|..|.|. +|||||+|.+.++|.+|+..|||..|.|+.|+|.|+++
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 102 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKL 102 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 456899999999999999999999999999999998 48999999999999999999999999999999999987
Q ss_pred CCC
Q 013716 360 QTD 362 (437)
Q Consensus 360 ~~~ 362 (437)
+..
T Consensus 103 ~~~ 105 (108)
T 2jvo_A 103 PAK 105 (108)
T ss_dssp CC-
T ss_pred CCC
Confidence 654
No 254
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4e-17 Score=125.14 Aligned_cols=82 Identities=24% Similarity=0.601 Sum_probs=75.5
Q ss_pred CCCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 013716 101 ALPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (437)
Q Consensus 101 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 180 (437)
......++|||+|||+.+|+++|+.+|++||.|..|+|+++ +|||||+|.+.++|.+|+..|++..|.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 93 (109)
T 1x4g_A 20 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKC 93 (109)
T ss_dssp HSCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 35567899999999999999999999999999999999875 789999999999999999999999999999999
Q ss_pred eecccccc
Q 013716 181 SLSETKNR 188 (437)
Q Consensus 181 ~~~~~~~~ 188 (437)
.+++++..
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4g_A 94 YWGKESPD 101 (109)
T ss_dssp ECCCCCCS
T ss_pred EecCCCCC
Confidence 99987643
No 255
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3e-17 Score=122.02 Aligned_cols=78 Identities=21% Similarity=0.464 Sum_probs=69.4
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCC-eeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCC-ceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGE-VTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK-YEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~-v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g-~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..||| ..|.|+.|+|.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 34579999999999999999999999999 6666652 258999999999999999999999 9999999999999
Q ss_pred cCCCC
Q 013716 358 KPQTD 362 (437)
Q Consensus 358 ~~~~~ 362 (437)
+++..
T Consensus 81 ~~~~~ 85 (93)
T 2cqh_A 81 VSKKL 85 (93)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 87644
No 256
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.71 E-value=7.6e-18 Score=124.44 Aligned_cols=79 Identities=28% Similarity=0.534 Sum_probs=70.3
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCC-C-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCC
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (437)
++|||+|||..+++++|+++|++||.|..|.+..++.+ . +|||||+|.+.+ |.+|+..|||..|.|++|+|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999988753 3 999999999999 99999999999999999999999876
Q ss_pred CC
Q 013716 361 TD 362 (437)
Q Consensus 361 ~~ 362 (437)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 257
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=4.2e-17 Score=125.07 Aligned_cols=76 Identities=24% Similarity=0.333 Sum_probs=71.0
Q ss_pred cceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCCC
Q 013716 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (437)
Q Consensus 282 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 361 (437)
.++|||+|||+.+++++|+++|++||.|..|.|++. +|||||+|.+.++|.+|+..|||..|.|+.|+|.|+....
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG----GITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS----SSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 479999999999999999999999999999999864 4899999999999999999999999999999999997644
No 258
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=6.1e-17 Score=125.30 Aligned_cols=81 Identities=17% Similarity=0.318 Sum_probs=74.5
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCcee--------CCe
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEI--------DGQ 350 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i--------~g~ 350 (437)
...++|||+|||+.+++++|+.+|+.||.|..|+|+.++.+. +|||||+|.+.++|.+|+..|||..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 345799999999999999999999999999999999888555 99999999999999999999999999 678
Q ss_pred EEEEEeccCC
Q 013716 351 VLEVVLAKPQ 360 (437)
Q Consensus 351 ~l~v~~a~~~ 360 (437)
+|+|.|+.++
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999999854
No 259
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.71 E-value=6.9e-17 Score=129.96 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=71.2
Q ss_pred cceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCC--eEEEEEeccC
Q 013716 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG--QVLEVVLAKP 359 (437)
Q Consensus 282 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g--~~l~v~~a~~ 359 (437)
..+|||+||++.+|+++|+++|++||.|.+|+|.... .+|||||+|.+.++|.+|+..|||..|.| ++|+|.|+++
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~--~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~ 123 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN--NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKL 123 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS--SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC--CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecC
Confidence 4679999999999999999999999999999996543 36899999999999999999999999965 9999999987
Q ss_pred CCC
Q 013716 360 QTD 362 (437)
Q Consensus 360 ~~~ 362 (437)
+..
T Consensus 124 ~~l 126 (164)
T 1sjr_A 124 TSL 126 (164)
T ss_dssp SSC
T ss_pred Ccc
Confidence 643
No 260
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.6e-17 Score=124.39 Aligned_cols=75 Identities=23% Similarity=0.383 Sum_probs=70.4
Q ss_pred cceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCC
Q 013716 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (437)
Q Consensus 282 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (437)
.++|||+|||..+++++|+.+|++||.|..|++.+. +|||||+|.+.++|.+|+..|||..|.|+.|+|.|++++
T Consensus 27 ~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 27 VTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE----KGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred CCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 479999999999999999999999999999999843 599999999999999999999999999999999999763
No 261
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.71 E-value=1e-16 Score=129.05 Aligned_cols=78 Identities=22% Similarity=0.462 Sum_probs=72.2
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||..+++++|+++|++||.|..|+|+.++.+. +|||||+|.+.++|.+|+..|||..|.|++|+|.||
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 456899999999999999999999999999999999885533 999999999999999999999999999999999986
No 262
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.70 E-value=1e-17 Score=125.14 Aligned_cols=79 Identities=16% Similarity=0.179 Sum_probs=70.1
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCC-C-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 281 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
..++|||+|||+.+++++|+++|++||.|..+.++.++.+ . +|||||+|.+.++|.+|+..||++.|.|++|+|.++.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 3479999999999999999999999999987766655443 3 8999999999999999999999999999999999986
Q ss_pred C
Q 013716 359 P 359 (437)
Q Consensus 359 ~ 359 (437)
.
T Consensus 94 s 94 (95)
T 2ek1_A 94 S 94 (95)
T ss_dssp -
T ss_pred C
Confidence 3
No 263
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=4.8e-17 Score=121.87 Aligned_cols=79 Identities=18% Similarity=0.370 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccC--CeEEEE
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK--GKTIRC 180 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~--g~~i~v 180 (437)
..+.++|||+|||+.+|+++|+++|++||.|..|++..+ +|||||+|.+.++|.+|++.||+..|. |+.|+|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V 87 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRV 87 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEE
Confidence 446789999999999999999999999999999998653 789999999999999999999999999 999999
Q ss_pred eeccccc
Q 013716 181 SLSETKN 187 (437)
Q Consensus 181 ~~~~~~~ 187 (437)
.+++++.
T Consensus 88 ~~a~~~~ 94 (97)
T 1why_A 88 DFAKSGP 94 (97)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9998653
No 264
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=9.8e-18 Score=130.04 Aligned_cols=80 Identities=25% Similarity=0.313 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCe----EEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDV----FEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i----~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 179 (437)
...++|||+|||+++|+++|+++|++||.| ..|+|+.+. +|+++|||||+|.+.++|.+||+. |+..|.||.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 467899999999999999999999999975 689999984 799999999999999999999965 99999999999
Q ss_pred Eeeccc
Q 013716 180 CSLSET 185 (437)
Q Consensus 180 v~~~~~ 185 (437)
|..+.+
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988753
No 265
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=7.3e-17 Score=123.34 Aligned_cols=77 Identities=27% Similarity=0.438 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCC-----eEE
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG-----KTI 178 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g-----~~i 178 (437)
...++|||+|||+++|+++|+++|++||.|..|+|+.+ |||||+|.+.++|.+||+.||+..|.| +.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i 85 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 85 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEE
Confidence 45789999999999999999999999999999999875 799999999999999999999999999 999
Q ss_pred EEeeccccc
Q 013716 179 RCSLSETKN 187 (437)
Q Consensus 179 ~v~~~~~~~ 187 (437)
.|.++.++.
T Consensus 86 ~V~~a~~~~ 94 (108)
T 1x4c_A 86 RVKVDGPRS 94 (108)
T ss_dssp EEEESSCCS
T ss_pred EEEeCCCCC
Confidence 999998753
No 266
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.7e-17 Score=118.72 Aligned_cols=74 Identities=20% Similarity=0.459 Sum_probs=69.3
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCC-C-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
++|||+|||+.+++++|+++|++||.|..|.++.++.+ . +|||||+|.+.++|.+|+..++ ..|+|++|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999999999988653 3 9999999999999999999999 9999999999987
No 267
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=5.3e-17 Score=118.47 Aligned_cols=76 Identities=18% Similarity=0.410 Sum_probs=70.3
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHh-CCCccCCeEEEEe
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDEL-HSKELKGKTIRCS 181 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l-~~~~~~g~~i~v~ 181 (437)
....++|||+|||+.+|+++|+++|++||.|..|++++ ++|||||+|.+.++|.+|+..| ++..+.|+.|+|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~------~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ------RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC------CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 34668999999999999999999999999999999976 4789999999999999999988 9999999999999
Q ss_pred ecc
Q 013716 182 LSE 184 (437)
Q Consensus 182 ~~~ 184 (437)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 268
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.70 E-value=1.5e-17 Score=129.18 Aligned_cols=80 Identities=29% Similarity=0.441 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeE--EEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVF--EVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~--~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 180 (437)
+...++|||+|||+++|+++|+++|+.| .|. .|+|+.++. |+++|||||+|.+.++|.+||+ +++..|.||.|.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEE
Confidence 3467899999999999999999999999 677 999999987 9999999999999999999996 5789999999999
Q ss_pred eeccc
Q 013716 181 SLSET 185 (437)
Q Consensus 181 ~~~~~ 185 (437)
..+..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88754
No 269
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.70 E-value=1.3e-17 Score=131.76 Aligned_cols=81 Identities=12% Similarity=0.210 Sum_probs=74.6
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCC---eeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGE---VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~---v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 355 (437)
...++|||+|||+.+|+++|+++|++||. |..|+|+.++.++ +|||||+|.+.++|.+||. ||+..|+||.|+|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 34579999999999999999999999999 8899999888777 9999999999999999999 99999999999999
Q ss_pred eccCCC
Q 013716 356 LAKPQT 361 (437)
Q Consensus 356 ~a~~~~ 361 (437)
++.++.
T Consensus 121 ~a~~~e 126 (136)
T 2hgl_A 121 KSHRTE 126 (136)
T ss_dssp ECCHHH
T ss_pred ECChHH
Confidence 987543
No 270
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.70 E-value=2.7e-17 Score=123.39 Aligned_cols=83 Identities=18% Similarity=0.385 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCcCCCHHHHH----HhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 013716 103 PPNGSEVFIGGLPKDASEEDLR----DLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~----~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 178 (437)
.++.++|||+|||+.+|+++|+ .+|++||.|..|++++ ++.++|||||+|.+.++|.+|++.|++..+.|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4577899999999999999999 9999999999999874 47889999999999999999999999999999999
Q ss_pred EEeecccccc
Q 013716 179 RCSLSETKNR 188 (437)
Q Consensus 179 ~v~~~~~~~~ 188 (437)
.|.++.++..
T Consensus 82 ~v~~a~~~~~ 91 (97)
T 1nu4_A 82 RIQYAKTDSD 91 (97)
T ss_dssp EEEECSSCCT
T ss_pred EEEEccCCCc
Confidence 9999987654
No 271
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=9.6e-17 Score=121.51 Aligned_cols=80 Identities=29% Similarity=0.521 Sum_probs=69.2
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCC-CC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+++|+.|+ .|.++.++. +. +|||||+|.+.++|.+||..||++.|.|+.|+|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWA 89 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEe
Confidence 4568999999999999999999999874 455555543 33 899999999999999999999999999999999999
Q ss_pred cCCCC
Q 013716 358 KPQTD 362 (437)
Q Consensus 358 ~~~~~ 362 (437)
+++..
T Consensus 90 ~~~~~ 94 (102)
T 2fc8_A 90 KPKGE 94 (102)
T ss_dssp CCCCS
T ss_pred cCCCC
Confidence 87644
No 272
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.70 E-value=1e-16 Score=119.75 Aligned_cols=79 Identities=25% Similarity=0.448 Sum_probs=71.2
Q ss_pred cCCCCCCCeEEEcCCCc-CCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 013716 100 LALPPNGSEVFIGGLPK-DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (437)
Q Consensus 100 ~~~~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 178 (437)
....+..++|||+|||+ .+|+++|+++|++||.|..|++. +|||||+|.+.++|.+|+..|++..+.|+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 87 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKL 87 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEEC
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34456789999999998 99999999999999999999982 7899999999999999999999999999999
Q ss_pred EEeecccc
Q 013716 179 RCSLSETK 186 (437)
Q Consensus 179 ~v~~~~~~ 186 (437)
+|.+++.+
T Consensus 88 ~V~~a~~~ 95 (97)
T 2xnq_A 88 ILEVSSSN 95 (97)
T ss_dssp EEEECCCC
T ss_pred EEEecCCC
Confidence 99998754
No 273
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.2e-18 Score=123.44 Aligned_cols=78 Identities=21% Similarity=0.351 Sum_probs=71.4
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCC-C-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 281 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~-~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
..++|||+|||+.+++++|+++|++||.|..|.|+.++.+ . +|||||+|.+.++|.+|+..|||..|.|+.|+|++++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 4579999999999999999999999999999999888643 3 8999999999999999999999999999999887754
No 274
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=2.8e-18 Score=129.73 Aligned_cols=81 Identities=22% Similarity=0.340 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
...++|||+|||+++|+++|+++|++||.|.. .++.+..+++++|||||+|.+.++|.+|++ |++..|.|+.|.|.++
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a 92 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 92 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEc
Confidence 35689999999999999999999999999888 667777779999999999999999999998 9999999999999998
Q ss_pred ccc
Q 013716 184 ETK 186 (437)
Q Consensus 184 ~~~ 186 (437)
.++
T Consensus 93 ~~~ 95 (101)
T 1fj7_A 93 KGR 95 (101)
T ss_dssp SCC
T ss_pred CCC
Confidence 765
No 275
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.5e-16 Score=119.05 Aligned_cols=79 Identities=16% Similarity=0.314 Sum_probs=72.4
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhccCCeeEE-EeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKV-VMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 281 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v-~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
..++|||+|||+.+++++|+.+|++||.|..| .|+.++.+ +.|||+|.+.++|.+|+..|||..|.|++|+|.++.+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~--~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET--AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS--EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC--CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 45799999999999999999999999999999 58877654 5599999999999999999999999999999999987
Q ss_pred CC
Q 013716 360 QT 361 (437)
Q Consensus 360 ~~ 361 (437)
+.
T Consensus 92 ~~ 93 (96)
T 2e44_A 92 EM 93 (96)
T ss_dssp CC
T ss_pred cc
Confidence 74
No 276
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.69 E-value=6.4e-17 Score=125.39 Aligned_cols=82 Identities=17% Similarity=0.377 Sum_probs=74.5
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
...++|||+|||+.+++++|+.+|++||.|..|.|+.+... +|||||+|.+.++|.+|+..|||..|.|+.|+|.|+.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPET-RGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTT-TTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCC-CcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 34579999999999999999999999999999999876432 89999999999999999999999999999999999986
Q ss_pred CCC
Q 013716 360 QTD 362 (437)
Q Consensus 360 ~~~ 362 (437)
+..
T Consensus 85 ~~~ 87 (115)
T 3lqv_A 85 NRA 87 (115)
T ss_dssp HHH
T ss_pred Chh
Confidence 544
No 277
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=8.5e-17 Score=119.70 Aligned_cols=78 Identities=18% Similarity=0.350 Sum_probs=67.7
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCC
Q 013716 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (437)
Q Consensus 281 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (437)
..++|||+|||+.+++++|+.+|++||.|..|.+ ++.+.+ ||||+|.+.++|.+|+. |||+.|+|+.|+|.++.++
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~--~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVM--DKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEE--CSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEE--cCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 3479999999999999999999999999999833 222223 99999999999999999 9999999999999988765
Q ss_pred CC
Q 013716 361 TD 362 (437)
Q Consensus 361 ~~ 362 (437)
..
T Consensus 83 ~~ 84 (94)
T 2e5g_A 83 EF 84 (94)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 278
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=121.15 Aligned_cols=78 Identities=17% Similarity=0.333 Sum_probs=70.4
Q ss_pred cCcceEEE--ecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCcee-----CCeEE
Q 013716 280 SQVKALYV--KNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI-----DGQVL 352 (437)
Q Consensus 280 ~~~~~l~V--~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i-----~g~~l 352 (437)
.++++||| +||++.+++++|+++|++||.|..|.|+.+ ||||||+|.+.++|.+|+..|||+.| .|++|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~----rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l 98 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 98 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT----CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEE
Confidence 34578999 669999999999999999999999999764 59999999999999999999999998 79999
Q ss_pred EEEeccCCC
Q 013716 353 EVVLAKPQT 361 (437)
Q Consensus 353 ~v~~a~~~~ 361 (437)
.|.|+....
T Consensus 99 ~v~~a~~~p 107 (114)
T 2cq2_A 99 YLNFVEKVQ 107 (114)
T ss_dssp EEEEESCCC
T ss_pred EEEecccCc
Confidence 999997543
No 279
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.69 E-value=4.7e-17 Score=122.04 Aligned_cols=80 Identities=21% Similarity=0.460 Sum_probs=72.8
Q ss_pred cCcceEEEecCCCCCCHHHHH----HHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEE
Q 013716 280 SQVKALYVKNIPDNTSTEKIK----ELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~----~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 354 (437)
.+.++|||+|||..+++++|+ .+|++||.|..|.+.. .+. +|||||+|.+.++|.+|+..|||..|.|+.|+|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 83 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEE
Confidence 455799999999999999999 9999999999999873 223 799999999999999999999999999999999
Q ss_pred EeccCCC
Q 013716 355 VLAKPQT 361 (437)
Q Consensus 355 ~~a~~~~ 361 (437)
.|++++.
T Consensus 84 ~~a~~~~ 90 (97)
T 1nu4_A 84 QYAKTDS 90 (97)
T ss_dssp EECSSCC
T ss_pred EEccCCC
Confidence 9998764
No 280
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=8.9e-17 Score=114.77 Aligned_cols=78 Identities=21% Similarity=0.385 Sum_probs=69.0
Q ss_pred CCCeEEEcCCCcCCCHHH----HHHhhccc-CCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 013716 105 NGSEVFIGGLPKDASEED----LRDLCEPI-GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~----l~~~f~~~-G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 179 (437)
..++|||+|||+.+++++ |+++|++| |+|.+| ++ |+|||.|.+.++|.+|++.|++..+.||+|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 334499999999999988 55899999 499998 24 9999999999999999999999999999999
Q ss_pred Eeecccccccccc
Q 013716 180 CSLSETKNRLFIG 192 (437)
Q Consensus 180 v~~~~~~~~l~v~ 192 (437)
|.+++.++.++..
T Consensus 78 v~~A~~~sd~~~~ 90 (96)
T 2diu_A 78 VSFTPKNRELCET 90 (96)
T ss_dssp EESSCCSCCCCCC
T ss_pred EEecCCCcceeEe
Confidence 9999988776543
No 281
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=1.5e-18 Score=134.71 Aligned_cols=84 Identities=32% Similarity=0.516 Sum_probs=78.9
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEE--------EEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCC
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFE--------VRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~--------v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 175 (437)
.+.++|||+|||+.+|+++|+++|++||.|.. |+|+.++.+++++|||||+|.+.++|.+|++.|++..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 46689999999999999999999999999998 9999998889999999999999999999999999999999
Q ss_pred eEEEEeeccccc
Q 013716 176 KTIRCSLSETKN 187 (437)
Q Consensus 176 ~~i~v~~~~~~~ 187 (437)
+.|.|.++.++.
T Consensus 85 ~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 NPIKVSFATRRA 96 (116)
Confidence 999999987653
No 282
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.69 E-value=8.9e-18 Score=133.15 Aligned_cols=81 Identities=26% Similarity=0.379 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
+...++|||+|||+++|+++|+++|++|| |+.|+|+.++. ++++|||||+|.+.++|.+|| .+++..|.|+.|.|..
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 34668999999999999999999999999 77999999986 999999999999999999999 8899999999999988
Q ss_pred cccc
Q 013716 183 SETK 186 (437)
Q Consensus 183 ~~~~ 186 (437)
+...
T Consensus 120 a~~~ 123 (139)
T 2hgn_A 120 NSTT 123 (139)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8654
No 283
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.69 E-value=6.2e-17 Score=121.10 Aligned_cols=79 Identities=23% Similarity=0.444 Sum_probs=70.0
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
...++|||+|||+.+++++|+.+|+.||.|..+ ...+. +|||||+|.+.++|.+|+..|||..|.|+.|+|.++.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 345899999999999999999999999988766 22233 8999999999999999999999999999999999998
Q ss_pred CCCC
Q 013716 359 PQTD 362 (437)
Q Consensus 359 ~~~~ 362 (437)
++..
T Consensus 90 ~~~~ 93 (96)
T 1fjc_A 90 EKGG 93 (96)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 7654
No 284
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.69 E-value=1e-16 Score=122.16 Aligned_cols=78 Identities=31% Similarity=0.567 Sum_probs=72.1
Q ss_pred CCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEe
Q 013716 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (437)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 181 (437)
.....++|||+|||+.+|+++|+.+|++||.|..|+++ +|||||+|.+.++|.+|+..|++..+.|+.|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999987 6899999999999999999999999999999999
Q ss_pred eccccc
Q 013716 182 LSETKN 187 (437)
Q Consensus 182 ~~~~~~ 187 (437)
++.+..
T Consensus 99 ~a~~~~ 104 (108)
T 2jvo_A 99 YSKLPA 104 (108)
T ss_dssp SCSCCC
T ss_pred EecCCC
Confidence 998653
No 285
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.69 E-value=1.8e-17 Score=126.48 Aligned_cols=81 Identities=15% Similarity=0.216 Sum_probs=74.9
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCC---eeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGE---VTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~---v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 355 (437)
....+|||+|||+.+|+++|+++|+.||. |..|+|+.++.++ +|||||+|.+.++|.+||. +|+..|+|+.|+|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 44579999999999999999999999998 8999999888766 9999999999999999999 99999999999999
Q ss_pred eccCCC
Q 013716 356 LAKPQT 361 (437)
Q Consensus 356 ~a~~~~ 361 (437)
++.++.
T Consensus 88 ~a~~~~ 93 (107)
T 2lmi_A 88 EINNED 93 (107)
T ss_dssp ECCHHH
T ss_pred ECCHHH
Confidence 997654
No 286
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=8.8e-17 Score=120.38 Aligned_cols=79 Identities=24% Similarity=0.410 Sum_probs=70.0
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
...++|||+|||+.+++++|+.+|++||.|. +.++.+. .+|||||+|.+.++|.+|+..|||..|.|+.|+|.++++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQG--PRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCC--CCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 3457999999999999999999999999996 5555432 379999999999999999999999999999999999987
Q ss_pred CC
Q 013716 360 QT 361 (437)
Q Consensus 360 ~~ 361 (437)
+.
T Consensus 94 ~~ 95 (97)
T 2e5j_A 94 QR 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 287
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=6.8e-17 Score=121.00 Aligned_cols=79 Identities=28% Similarity=0.485 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
...++|||+|||+.+|+++|+.+|++||.|. ++++. ++++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 3568999999999999999999999999996 66664 467999999999999999999999999999999999999
Q ss_pred cccc
Q 013716 184 ETKN 187 (437)
Q Consensus 184 ~~~~ 187 (437)
.++.
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8653
No 288
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.2e-17 Score=129.65 Aligned_cols=80 Identities=25% Similarity=0.450 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCe----EEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDV----FEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i----~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 179 (437)
.+.++|||+|||+.+|+++|+++|++||.| ..+++. +++++|||||+|.+.++|.+|+..|++..|.|+.|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC----CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 467899999999999999999999999998 445444 689999999999999999999999999999999999
Q ss_pred Eeeccccc
Q 013716 180 CSLSETKN 187 (437)
Q Consensus 180 v~~~~~~~ 187 (437)
|.++.++.
T Consensus 99 v~~a~~~~ 106 (115)
T 2cpx_A 99 IEFGKNKK 106 (115)
T ss_dssp EEECCCCS
T ss_pred EEEccCCC
Confidence 99998653
No 289
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=117.95 Aligned_cols=79 Identities=28% Similarity=0.474 Sum_probs=72.2
Q ss_pred CCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEe
Q 013716 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (437)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 181 (437)
.....++|||+|||+.+|+++|+++|++||.|..|++++ +||||+|.+.++|.+|+..||+..|.|+.|.|.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 77 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQ 77 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 345678999999999999999999999999999999963 399999999999999999999999999999999
Q ss_pred ecccccc
Q 013716 182 LSETKNR 188 (437)
Q Consensus 182 ~~~~~~~ 188 (437)
++.++..
T Consensus 78 ~a~~~~~ 84 (92)
T 2dgt_A 78 LSTSRLR 84 (92)
T ss_dssp ESSCCCS
T ss_pred EccCCCC
Confidence 9986543
No 290
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.68 E-value=5.3e-17 Score=122.79 Aligned_cols=80 Identities=13% Similarity=0.167 Sum_probs=72.3
Q ss_pred CeEEEcCC----CcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecC----HHH----HHHHHH--HhCCCc
Q 013716 107 SEVFIGGL----PKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRS----KEF----AKKAID--ELHSKE 172 (437)
Q Consensus 107 ~~l~v~nL----p~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~----~~~----A~~a~~--~l~~~~ 172 (437)
+.|||+|| |+.+++.+|+++|+.||.|.+|.++.|+.||+++|||||+|.+ ++. |.+|+. .|++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 67999999 9999999999999999999999999999999999999999996 322 889988 789999
Q ss_pred cCCeEEEEeecccc
Q 013716 173 LKGKTIRCSLSETK 186 (437)
Q Consensus 173 ~~g~~i~v~~~~~~ 186 (437)
|.|+.|+|..-...
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999987643
No 291
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.68 E-value=7.3e-17 Score=134.39 Aligned_cols=86 Identities=23% Similarity=0.344 Sum_probs=80.0
Q ss_pred CCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEe
Q 013716 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (437)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 181 (437)
.....++|||+|||+.+|+++|+++|++||.|..|.|+.+. ++.++|||||+|.+.++|.+|++.|++..|.|+.|.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999998 79999999999999999999999999999999999999
Q ss_pred ecccccc
Q 013716 182 LSETKNR 188 (437)
Q Consensus 182 ~~~~~~~ 188 (437)
++.....
T Consensus 163 ~a~~~~~ 169 (177)
T 2f3j_A 163 LVASQID 169 (177)
T ss_dssp EESSGGG
T ss_pred EecCCCC
Confidence 9976543
No 292
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=2.1e-16 Score=112.89 Aligned_cols=72 Identities=22% Similarity=0.356 Sum_probs=64.8
Q ss_pred eEEEecCCCCCCHHH----HHHHHhccC-CeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 284 ALYVKNIPDNTSTEK----IKELFQRHG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 284 ~l~V~nLp~~~t~~~----L~~~f~~~G-~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
.|||+|||+.+++++ |+++|++|| .|..|. .|+|||.|.+.++|.+|++.|+|..|.||+|+|+||+
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt--------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~ 82 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT--------GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTP 82 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC--------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSC
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe--------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecC
Confidence 499999999999987 558999995 999992 1899999999999999999999999999999999998
Q ss_pred CCCCC
Q 013716 359 PQTDK 363 (437)
Q Consensus 359 ~~~~~ 363 (437)
.+..-
T Consensus 83 ~~sd~ 87 (96)
T 2diu_A 83 KNREL 87 (96)
T ss_dssp CSCCC
T ss_pred CCcce
Confidence 76543
No 293
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=117.45 Aligned_cols=77 Identities=35% Similarity=0.554 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
+...++|||+|||+.+|+++|+.+|++||.|..|++++ +||||+|.+.++|.+|++.|++..+.|+.|.|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999973 3999999999999999999999999999999999
Q ss_pred ccccc
Q 013716 183 SETKN 187 (437)
Q Consensus 183 ~~~~~ 187 (437)
+.+..
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 97653
No 294
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=6.4e-16 Score=115.64 Aligned_cols=78 Identities=23% Similarity=0.381 Sum_probs=70.1
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
...++|||+|| .+++++|+++|++||.|..|.|... +|||||+|.+.++|.+|+..||+..|.|++|+|.|+.+
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP----RNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 34579999996 8999999999999999999999532 59999999999999999999999999999999999987
Q ss_pred CCCC
Q 013716 360 QTDK 363 (437)
Q Consensus 360 ~~~~ 363 (437)
+...
T Consensus 87 ~~~~ 90 (97)
T 1x5p_A 87 QPML 90 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6443
No 295
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=4.1e-17 Score=122.09 Aligned_cols=78 Identities=23% Similarity=0.450 Sum_probs=71.0
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
..++|||+|||+.+|+++|+++|++||.|..+ ..+++++|||||+|.+.++|.+|+..|++..|.|+.|.|.++.
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 56899999999999999999999999988666 3458999999999999999999999999999999999999997
Q ss_pred ccc
Q 013716 185 TKN 187 (437)
Q Consensus 185 ~~~ 187 (437)
++.
T Consensus 90 ~~~ 92 (96)
T 1fjc_A 90 EKG 92 (96)
T ss_dssp SSC
T ss_pred CCC
Confidence 653
No 296
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=122.91 Aligned_cols=78 Identities=29% Similarity=0.481 Sum_probs=67.3
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCC---CCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKES---GESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~---~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 180 (437)
...++|||+|||+++|+++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+|++.|++ +.|+.+.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEe
Confidence 4568999999999999999999999999999 888888777 79999999999999999999998842 56666665
Q ss_pred eecc
Q 013716 181 SLSE 184 (437)
Q Consensus 181 ~~~~ 184 (437)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 5443
No 297
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=2.5e-17 Score=124.47 Aligned_cols=81 Identities=16% Similarity=0.259 Sum_probs=70.6
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCC-CC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKS-GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 281 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~-~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
..++|||+|||+.+++++|+.+|++||.|.. .++.+.. +. +|||||+|.+.++|.+|+. |||..|.|+.|+|.+++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 4579999999999999999999999999887 4444432 33 8999999999999999998 99999999999999998
Q ss_pred CCCCC
Q 013716 359 PQTDK 363 (437)
Q Consensus 359 ~~~~~ 363 (437)
++..+
T Consensus 94 ~~~~~ 98 (101)
T 1fj7_A 94 GRDGT 98 (101)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 76543
No 298
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.68 E-value=3e-16 Score=121.58 Aligned_cols=78 Identities=21% Similarity=0.309 Sum_probs=70.8
Q ss_pred cceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccE-EEEEeCCHHHHHHHHHhcCCceeCC--eEEEEEecc
Q 013716 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDF-GFIHYAERSSALKAVKDTEKYEIDG--QVLEVVLAK 358 (437)
Q Consensus 282 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~i~g--~~l~v~~a~ 358 (437)
...|||+||++.+|+++|+++|++||.|.+|+|.... +|| |||+|.+.++|.+|+..|||..|.| +.|+|.|++
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~---~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET---TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC---CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 3578899999999999999999999999999887643 577 9999999999999999999999988 999999998
Q ss_pred CCCC
Q 013716 359 PQTD 362 (437)
Q Consensus 359 ~~~~ 362 (437)
++.-
T Consensus 105 ~~~l 108 (130)
T 3zzy_A 105 LTSL 108 (130)
T ss_dssp CSSC
T ss_pred CCce
Confidence 7654
No 299
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.68 E-value=2.5e-17 Score=124.69 Aligned_cols=80 Identities=29% Similarity=0.538 Sum_probs=74.9
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
..++|||+|||+.+|+++|+.+|++||.|..|+|+.++ +++++|||||+|.+.++|.+|+. ++..+.|+.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 45899999999999999999999999999999999998 89999999999999999999996 9999999999999887
Q ss_pred ccc
Q 013716 185 TKN 187 (437)
Q Consensus 185 ~~~ 187 (437)
.+.
T Consensus 85 ~~~ 87 (102)
T 2xs2_A 85 RKQ 87 (102)
T ss_dssp ECC
T ss_pred cCc
Confidence 543
No 300
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=4.9e-17 Score=124.70 Aligned_cols=75 Identities=16% Similarity=0.176 Sum_probs=70.0
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
..++|||+|||+.+|+++|+++|++||.|..|+|++ ++|||||+|.+.++|.+|++.||+..|.|+.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 457999999999999999999999999999998863 57899999999999999999999999999999999986
Q ss_pred c
Q 013716 185 T 185 (437)
Q Consensus 185 ~ 185 (437)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 301
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=3.1e-18 Score=132.97 Aligned_cols=83 Identities=18% Similarity=0.358 Sum_probs=75.0
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeE--------EEeCCCCCC-C-ccEEEEEeCCHHHHHHHHHhcCCceeCC
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK--------VVMPPGKSG-K-RDFGFIHYAERSSALKAVKDTEKYEIDG 349 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~--------v~i~~~~~~-~-~g~afV~f~~~~~A~~A~~~l~g~~i~g 349 (437)
...++|||+|||+.+++++|+++|++||.|.. |.|+.++.+ . +|||||+|.+.++|.+|+..|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 34579999999999999999999999999998 888887543 3 8999999999999999999999999999
Q ss_pred eEEEEEeccCCCC
Q 013716 350 QVLEVVLAKPQTD 362 (437)
Q Consensus 350 ~~l~v~~a~~~~~ 362 (437)
++|+|.+++++..
T Consensus 85 ~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 85 NPIKVSFATRRAD 97 (116)
Confidence 9999999986643
No 302
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=4.6e-17 Score=115.71 Aligned_cols=73 Identities=26% Similarity=0.455 Sum_probs=67.7
Q ss_pred eEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 284 ALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 284 ~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
+|||+|||+.+++++|+++|++||.|..|.++.++.+. +|||||+|.+.++|.+|+.. +++.|.|+.|+|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999876533 99999999999999999985 899999999999886
No 303
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.68 E-value=1.7e-16 Score=120.21 Aligned_cols=76 Identities=25% Similarity=0.477 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
.+.++|||+|||+.+|+++|+++|++||.|..|+++ ++||||+|.+.++|.+|++.|++..|.|+.|.|.++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 456899999999999999999999999999999986 459999999999999999999999999999999999
Q ss_pred cccc
Q 013716 184 ETKN 187 (437)
Q Consensus 184 ~~~~ 187 (437)
.++.
T Consensus 81 ~~~~ 84 (103)
T 2dgu_A 81 KPPD 84 (103)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 8653
No 304
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.67 E-value=2e-16 Score=122.18 Aligned_cols=75 Identities=15% Similarity=0.296 Sum_probs=66.8
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeE-----EEEE
Q 013716 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQV-----LEVV 355 (437)
Q Consensus 281 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~-----l~v~ 355 (437)
...+|||+|||+.+++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||..|||..|.|+. |+|.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 3479999999999999999999999999999999876 79999999999999999999999999998 6776
Q ss_pred eccCC
Q 013716 356 LAKPQ 360 (437)
Q Consensus 356 ~a~~~ 360 (437)
.+.++
T Consensus 90 ~~~~~ 94 (115)
T 3beg_B 90 VDGPR 94 (115)
T ss_dssp ECC--
T ss_pred cCCCC
Confidence 66553
No 305
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.67 E-value=9.2e-17 Score=119.96 Aligned_cols=77 Identities=27% Similarity=0.493 Sum_probs=69.8
Q ss_pred CCCCCCeEEEcCCCc-CCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 013716 102 LPPNGSEVFIGGLPK-DASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (437)
Q Consensus 102 ~~~~~~~l~v~nLp~-~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 180 (437)
..++.++|||+|||+ .+|+++|+.+|++||.|..|++. +|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345778999999998 99999999999999999999983 689999999999999999999999999999999
Q ss_pred eecccc
Q 013716 181 SLSETK 186 (437)
Q Consensus 181 ~~~~~~ 186 (437)
.++.++
T Consensus 78 ~~a~~~ 83 (96)
T 2kvi_A 78 EVSSSN 83 (96)
T ss_dssp EEEECC
T ss_pred EEcCcC
Confidence 998754
No 306
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.5e-16 Score=117.60 Aligned_cols=76 Identities=28% Similarity=0.426 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhccc--CCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEe
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPI--GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~--G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 181 (437)
...++|||+|||+.+|+++|+++|++| |.|..|++. +|||||+|.+.++|.+|+..||+..|.|+.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVT 84 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 356899999999999999999999999 999999874 5699999999999999999999999999999999
Q ss_pred eccccc
Q 013716 182 LSETKN 187 (437)
Q Consensus 182 ~~~~~~ 187 (437)
+++++.
T Consensus 85 ~a~~~~ 90 (99)
T 2cpd_A 85 LAKPVD 90 (99)
T ss_dssp CCCCCC
T ss_pred ECCCCC
Confidence 998654
No 307
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=4.2e-17 Score=126.50 Aligned_cols=80 Identities=14% Similarity=0.274 Sum_probs=72.3
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhccCCe----eEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013716 281 QVKALYVKNIPDNTSTEKIKELFQRHGEV----TKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (437)
Q Consensus 281 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v----~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 355 (437)
...+|||+|||+.+|+++|+++|++||.| ..|+|+.+..++ +|||||+|.+.++|.+||.. |++.|+||.|.|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~ 100 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELF 100 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEE
Confidence 34799999999999999999999999975 688888877776 99999999999999999996 9999999999999
Q ss_pred eccCCC
Q 013716 356 LAKPQT 361 (437)
Q Consensus 356 ~a~~~~ 361 (437)
.+.++.
T Consensus 101 ~a~~~e 106 (123)
T 2dha_A 101 RSTAAE 106 (123)
T ss_dssp EECHHH
T ss_pred ECCHHH
Confidence 987654
No 308
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=5.3e-16 Score=119.83 Aligned_cols=77 Identities=17% Similarity=0.202 Sum_probs=69.2
Q ss_pred cceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccE-EEEEeCCHHHHHHHHHhcCCceeCC--eEEEEEecc
Q 013716 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDF-GFIHYAERSSALKAVKDTEKYEIDG--QVLEVVLAK 358 (437)
Q Consensus 282 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~-afV~f~~~~~A~~A~~~l~g~~i~g--~~l~v~~a~ 358 (437)
...|||+||++.+++++|+++|++||.|..|+|... +|| |||+|.+.++|.+|+..|||..|.| +.|+|.||+
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 345789999999999999999999999999998653 286 9999999999999999999999987 699999998
Q ss_pred CCCC
Q 013716 359 PQTD 362 (437)
Q Consensus 359 ~~~~ 362 (437)
++..
T Consensus 101 ~~~l 104 (124)
T 2e5i_A 101 PTRL 104 (124)
T ss_dssp CSCC
T ss_pred CCcc
Confidence 7753
No 309
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.1e-17 Score=127.13 Aligned_cols=81 Identities=16% Similarity=0.318 Sum_probs=71.4
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeE-EEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~-v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
...++|||+|||+.+++++|+++|+.||.|.. +.+.....+. +|||||+|.+.++|.+||. ||+..|+|+.|+|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 34589999999999999999999999999987 4444444555 9999999999999999999 9999999999999999
Q ss_pred cCCC
Q 013716 358 KPQT 361 (437)
Q Consensus 358 ~~~~ 361 (437)
.++.
T Consensus 102 ~~~~ 105 (124)
T 1wel_A 102 TKKG 105 (124)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7654
No 310
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.66 E-value=1.1e-16 Score=121.15 Aligned_cols=81 Identities=20% Similarity=0.394 Sum_probs=73.6
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 281 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
..++|||+|||+.+++++|+.+|+.||.|..|.|+.++.+. +|||||+|.+.++|.+|+. +++.|+|+.|.|.++.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 45799999999999999999999999999999999888555 9999999999999999998 99999999999999987
Q ss_pred CCCC
Q 013716 360 QTDK 363 (437)
Q Consensus 360 ~~~~ 363 (437)
+...
T Consensus 86 ~~~~ 89 (102)
T 2xs2_A 86 KQNL 89 (102)
T ss_dssp CC--
T ss_pred Ccch
Confidence 6543
No 311
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.66 E-value=5e-16 Score=113.81 Aligned_cols=76 Identities=22% Similarity=0.423 Sum_probs=62.9
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCc--eeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY--EIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~--~i~g~~l~v~~a 357 (437)
.+..+|||+|||+.+|+++|+++|++||.|..|+|+.+ +||||||+|.+.++|.+ |++. .+.|+.|.|.++
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a 81 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNA 81 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEc
Confidence 44579999999999999999999999999999999885 47999999999999984 4554 456999999999
Q ss_pred cCCCC
Q 013716 358 KPQTD 362 (437)
Q Consensus 358 ~~~~~ 362 (437)
.++..
T Consensus 82 ~~k~~ 86 (89)
T 3d2w_A 82 EPKHN 86 (89)
T ss_dssp C----
T ss_pred CCCCc
Confidence 87654
No 312
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.66 E-value=3.4e-16 Score=130.32 Aligned_cols=83 Identities=29% Similarity=0.446 Sum_probs=76.8
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
...++|||+|||+.+++++|+++|+.||.|..|.|..+..+. +|||||+|.+.++|.+|+..|||..|.|+.|+|.||.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 456899999999999999999999999999999999888555 9999999999999999999999999999999999997
Q ss_pred CCCC
Q 013716 359 PQTD 362 (437)
Q Consensus 359 ~~~~ 362 (437)
....
T Consensus 166 ~~~~ 169 (177)
T 2f3j_A 166 SQID 169 (177)
T ss_dssp SGGG
T ss_pred CCCC
Confidence 6543
No 313
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.66 E-value=2.2e-16 Score=115.80 Aligned_cols=76 Identities=17% Similarity=0.354 Sum_probs=69.4
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCC
Q 013716 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (437)
Q Consensus 281 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (437)
..++|||+|||+.+++++|+++|++| .|..|+|. ..+|||||+|.+.++|.+|+..|||..|.|++|+|.|+...
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 34789999999999999999999999 99999885 23799999999999999999999999999999999999654
Q ss_pred C
Q 013716 361 T 361 (437)
Q Consensus 361 ~ 361 (437)
.
T Consensus 79 ~ 79 (88)
T 1wg1_A 79 A 79 (88)
T ss_dssp C
T ss_pred c
Confidence 3
No 314
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.4e-16 Score=118.32 Aligned_cols=78 Identities=28% Similarity=0.484 Sum_probs=69.6
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCC-eEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC-CccCCeEEEE
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGD-VFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS-KELKGKTIRC 180 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~-i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~-~~~~g~~i~v 180 (437)
+...++|||+|||+++|+++|+++|++||. |..+.+. ++|||||+|.+.++|.+|++.||+ ..|.|+.|+|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 77 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEV 77 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEE
Confidence 456789999999999999999999999999 6555552 478999999999999999999999 9999999999
Q ss_pred eeccccc
Q 013716 181 SLSETKN 187 (437)
Q Consensus 181 ~~~~~~~ 187 (437)
.++.++.
T Consensus 78 ~~a~~~~ 84 (93)
T 2cqh_A 78 DYSVSKK 84 (93)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9998653
No 315
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.66 E-value=1.2e-16 Score=124.01 Aligned_cols=80 Identities=21% Similarity=0.360 Sum_probs=72.0
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCee--EEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEe
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVT--KVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~--~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 356 (437)
...++|||+|||+.+|+++|+++|+.| .|. .|+|+.++.++ +|||||+|.+.++|.+||.. ++..|+||.|+|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEE
Confidence 345789999999999999999999999 676 99999988877 99999999999999999985 78999999999999
Q ss_pred ccCCC
Q 013716 357 AKPQT 361 (437)
Q Consensus 357 a~~~~ 361 (437)
+.++.
T Consensus 118 a~~~e 122 (126)
T 2hgm_A 118 SSQEE 122 (126)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 86543
No 316
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=4.4e-16 Score=115.78 Aligned_cols=77 Identities=25% Similarity=0.417 Sum_probs=69.1
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
...++|||+|||+++|+++|+.+|++||.|..| +.++.+++ ||||+|.+.++|.+|++ |++..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a 79 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPR 79 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEEC
Confidence 356799999999999999999999999999987 55555555 99999999999999998 9999999999999988
Q ss_pred ccc
Q 013716 184 ETK 186 (437)
Q Consensus 184 ~~~ 186 (437)
.++
T Consensus 80 ~~~ 82 (94)
T 2e5g_A 80 EQK 82 (94)
T ss_dssp CCS
T ss_pred CcC
Confidence 654
No 317
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.65 E-value=6.9e-16 Score=128.11 Aligned_cols=82 Identities=27% Similarity=0.549 Sum_probs=78.2
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
....++|||+|||+.+|+++|+++|++||.|..++++++..++.++|||||+|.+.++|.+|+..||+..+.|+.|.|.+
T Consensus 84 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 163 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163 (166)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEe
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred cc
Q 013716 183 SE 184 (437)
Q Consensus 183 ~~ 184 (437)
++
T Consensus 164 a~ 165 (166)
T 3md3_A 164 AA 165 (166)
T ss_dssp SC
T ss_pred cC
Confidence 85
No 318
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.3e-16 Score=117.95 Aligned_cols=78 Identities=23% Similarity=0.289 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEE-EeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVR-LMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~-~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
..++|||+|||+.+|+++|+.+|++||.|..|+ ++.++.++ .|||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 468899999999999999999999999999994 77776543 3999999999999999999999999999999999
Q ss_pred ccc
Q 013716 184 ETK 186 (437)
Q Consensus 184 ~~~ 186 (437)
.++
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 865
No 319
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.65 E-value=3.8e-16 Score=119.86 Aligned_cols=74 Identities=26% Similarity=0.456 Sum_probs=69.7
Q ss_pred CCCeEEEcCCCcC-CCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 105 NGSEVFIGGLPKD-ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 105 ~~~~l~v~nLp~~-~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
..++|||+|||+. +|+++|+++|++||.|..|++ ++|||||+|.+.++|.+|++.|++..|.|+.|+|.++
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 4589999999999 999999999999999999998 5789999999999999999999999999999999998
Q ss_pred ccc
Q 013716 184 ETK 186 (437)
Q Consensus 184 ~~~ 186 (437)
...
T Consensus 98 ~~~ 100 (110)
T 1wf1_A 98 GEP 100 (110)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 320
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.65 E-value=6.4e-17 Score=130.55 Aligned_cols=81 Identities=26% Similarity=0.395 Sum_probs=72.5
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEE--------EEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccC
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEV--------RLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 174 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v--------~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 174 (437)
..+.++|||+|||+.+|+++|+.+|++||.|..+ ++. .+++++|||||+|.+.++|.+|+..||+..|.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 4467899999999999999999999999988764 333 35899999999999999999999999999999
Q ss_pred CeEEEEeecccc
Q 013716 175 GKTIRCSLSETK 186 (437)
Q Consensus 175 g~~i~v~~~~~~ 186 (437)
|+.|.|.++++.
T Consensus 119 g~~l~V~~a~~~ 130 (143)
T 3egn_A 119 GKPMVVQFARSA 130 (143)
T ss_dssp TEECEEEECCCS
T ss_pred CcEEEEEECCCC
Confidence 999999999754
No 321
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1e-15 Score=114.52 Aligned_cols=76 Identities=20% Similarity=0.465 Sum_probs=70.1
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
...++|||+|| .+|+++|+++|++||.|..|+|. +++|||||+|.+.++|.+|+..|++..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a 84 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 84 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 46689999996 89999999999999999999983 57899999999999999999999999999999999999
Q ss_pred cccc
Q 013716 184 ETKN 187 (437)
Q Consensus 184 ~~~~ 187 (437)
.++.
T Consensus 85 ~~~~ 88 (97)
T 1x5p_A 85 RKQP 88 (97)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 8654
No 322
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.64 E-value=1.2e-15 Score=114.93 Aligned_cols=82 Identities=17% Similarity=0.277 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCc-----CCCHHHHHHhhcccCCeEEEEEeecCCC-CCcccEEEEEecCHHHHHHHHHHhCCCccCCeE
Q 013716 104 PNGSEVFIGGLPK-----DASEEDLRDLCEPIGDVFEVRLMKDKES-GESKGFAFVSFRSKEFAKKAIDELHSKELKGKT 177 (437)
Q Consensus 104 ~~~~~l~v~nLp~-----~~t~~~l~~~f~~~G~i~~v~~~~~~~~-~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~ 177 (437)
.++++|+|+||.. +-++++|+++|++||.|.+|+|++++.+ ++++|||||+|.+.++|.+|++.|||..+.||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999963 2378999999999999999999998754 689999999999999999999999999999999
Q ss_pred EEEeeccc
Q 013716 178 IRCSLSET 185 (437)
Q Consensus 178 i~v~~~~~ 185 (437)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 323
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.64 E-value=8.8e-16 Score=118.94 Aligned_cols=78 Identities=15% Similarity=0.235 Sum_probs=70.5
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccE-EEEEecCHHHHHHHHHHhCCCccCC--eEEEEe
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF-AFVSFRSKEFAKKAIDELHSKELKG--KTIRCS 181 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~-afV~f~~~~~A~~a~~~l~~~~~~g--~~i~v~ 181 (437)
.--.|||+||++.+|+++|+++|++||.|.+|+++.+ ++|+ |||+|.+.++|.+|++.|||..|.| +.|+|.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 3356789999999999999999999999999998764 2577 9999999999999999999999988 999999
Q ss_pred eccccc
Q 013716 182 LSETKN 187 (437)
Q Consensus 182 ~~~~~~ 187 (437)
+++++.
T Consensus 102 ~ak~~~ 107 (130)
T 3zzy_A 102 FSKLTS 107 (130)
T ss_dssp ECSCSS
T ss_pred ecCCCc
Confidence 998764
No 324
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.3e-16 Score=114.30 Aligned_cols=78 Identities=21% Similarity=0.453 Sum_probs=66.7
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCC
Q 013716 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQ 360 (437)
Q Consensus 281 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 360 (437)
..++|||+|||+.+++++|+++|++||.|..|+|+.+ ++|||||+|.+.++|.+|+.. ...+.|++|+|.++.++
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPK 78 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCC
Confidence 4579999999999999999999999999999999875 469999999999999864332 44669999999999876
Q ss_pred CCC
Q 013716 361 TDK 363 (437)
Q Consensus 361 ~~~ 363 (437)
...
T Consensus 79 ~~~ 81 (88)
T 1wf0_A 79 HNS 81 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 325
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.64 E-value=6.1e-16 Score=147.23 Aligned_cols=82 Identities=20% Similarity=0.417 Sum_probs=78.6
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
..++|||+|||+.+|+++|+.+|++||.|..|.|+.+..++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 45799999999999999999999999999999999999899999999999999999999999999999999999999998
Q ss_pred cc
Q 013716 185 TK 186 (437)
Q Consensus 185 ~~ 186 (437)
+.
T Consensus 181 ~~ 182 (437)
T 3pgw_S 181 GR 182 (437)
T ss_pred CC
Confidence 64
No 326
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.64 E-value=2.7e-16 Score=126.85 Aligned_cols=82 Identities=24% Similarity=0.399 Sum_probs=70.3
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEE--------EeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCe
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKV--------VMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQ 350 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v--------~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~ 350 (437)
.+.++|||+|||+.+|+++|+.+|++||.|..+ ++. ..+. +|||||+|.+.++|.+|+..|||..|.|+
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~--~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM--KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE--EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec--cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 345799999999999999999999999998764 222 2333 89999999999999999999999999999
Q ss_pred EEEEEeccCCCCC
Q 013716 351 VLEVVLAKPQTDK 363 (437)
Q Consensus 351 ~l~v~~a~~~~~~ 363 (437)
.|+|.|+++...+
T Consensus 121 ~l~V~~a~~~~~~ 133 (143)
T 3egn_A 121 PMVVQFARSARPK 133 (143)
T ss_dssp ECEEEECCCSCC-
T ss_pred EEEEEECCCCCCc
Confidence 9999999765443
No 327
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.5e-16 Score=117.26 Aligned_cols=79 Identities=24% Similarity=0.333 Sum_probs=69.2
Q ss_pred cCCCCCCCeEEE--cCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCcc----
Q 013716 100 LALPPNGSEVFI--GGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL---- 173 (437)
Q Consensus 100 ~~~~~~~~~l~v--~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~---- 173 (437)
.....+.++||| +||++.+|+++|+++|++||.|..|.++. .+|||||+|.+.++|.+|++.|||..+
T Consensus 19 ~~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~l 92 (114)
T 2cq2_A 19 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDL 92 (114)
T ss_dssp CCCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTT
T ss_pred cCCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEcccc
Confidence 334456788999 77999999999999999999999998753 378999999999999999999999988
Q ss_pred -CCeEEEEeecc
Q 013716 174 -KGKTIRCSLSE 184 (437)
Q Consensus 174 -~g~~i~v~~~~ 184 (437)
.|+.|.|.++.
T Consensus 93 g~g~~l~v~~a~ 104 (114)
T 2cq2_A 93 GQKITLYLNFVE 104 (114)
T ss_dssp SCEEECEEEEES
T ss_pred CCCcEEEEEecc
Confidence 68888888765
No 328
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.63 E-value=1e-14 Score=132.08 Aligned_cols=81 Identities=17% Similarity=0.420 Sum_probs=72.8
Q ss_pred cCcceEEEecCCCCCCHHHHH----HHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013716 280 SQVKALYVKNIPDNTSTEKIK----ELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~----~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 355 (437)
...++|||+|||+.+++++|+ ++|+.||.|..|+|.+.. ..+|||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSL-KMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCC-CcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 446899999999999999976 899999999999998722 238999999999999999999999999999999999
Q ss_pred eccCCC
Q 013716 356 LAKPQT 361 (437)
Q Consensus 356 ~a~~~~ 361 (437)
|++...
T Consensus 86 ~a~~~~ 91 (282)
T 3pgw_A 86 YAKTDS 91 (282)
T ss_pred EeccCc
Confidence 997655
No 329
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.63 E-value=9.1e-16 Score=132.76 Aligned_cols=82 Identities=12% Similarity=0.293 Sum_probs=74.4
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
.+.++|||+|||+.+|+++|+++|++||.|..|+|++++.+. +|||||+|.+.++|.+|+..+|+..+.|+.|+|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 445799999999999999999999999999999999877544 999999999999999999999999999999999998
Q ss_pred cCCC
Q 013716 358 KPQT 361 (437)
Q Consensus 358 ~~~~ 361 (437)
....
T Consensus 93 ~~~~ 96 (213)
T 4f02_A 93 QRDP 96 (213)
T ss_dssp CCCT
T ss_pred cccc
Confidence 7554
No 330
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.63 E-value=1e-15 Score=112.08 Aligned_cols=75 Identities=32% Similarity=0.557 Sum_probs=62.7
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCc--cCCeEEEE
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE--LKGKTIRC 180 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~--~~g~~i~v 180 (437)
.+..++|||+|||+++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+ +++.. +.|+.|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 456789999999999999999999999999999999864 78999999999999984 34544 46999999
Q ss_pred eecccc
Q 013716 181 SLSETK 186 (437)
Q Consensus 181 ~~~~~~ 186 (437)
.++.++
T Consensus 79 ~~a~~k 84 (89)
T 3d2w_A 79 SNAEPK 84 (89)
T ss_dssp EECC--
T ss_pred EEcCCC
Confidence 998765
No 331
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.63 E-value=1.1e-15 Score=127.82 Aligned_cols=79 Identities=28% Similarity=0.537 Sum_probs=76.3
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
..++|||+|||+.+|+++|+++|++||.|..+++++++.+|+++|||||+|.+.++|.+|++.||+..+.|+.|.|.+|
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 4689999999999999999999999999999999999888999999999999999999999999999999999999987
No 332
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.63 E-value=1.4e-15 Score=111.38 Aligned_cols=72 Identities=24% Similarity=0.456 Sum_probs=66.8
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhcc----C-------CeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeC
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRH----G-------EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~----G-------~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~ 348 (437)
...++|||+|||+.+++++|+++|++| | .|..+.+.++ +|||||+|.+.++|.+|+ .|||..|.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~----kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS----SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC----CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 345799999999999999999999999 8 8999999876 499999999999999999 99999999
Q ss_pred CeEEEEEe
Q 013716 349 GQVLEVVL 356 (437)
Q Consensus 349 g~~l~v~~ 356 (437)
|+.|+|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999974
No 333
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.62 E-value=1.6e-15 Score=114.32 Aligned_cols=81 Identities=21% Similarity=0.243 Sum_probs=70.6
Q ss_pred cCcceEEEecCCC-----CCCHHHHHHHHhccCCeeEEEeCCCCC--CC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeE
Q 013716 280 SQVKALYVKNIPD-----NTSTEKIKELFQRHGEVTKVVMPPGKS--GK-RDFGFIHYAERSSALKAVKDTEKYEIDGQV 351 (437)
Q Consensus 280 ~~~~~l~V~nLp~-----~~t~~~L~~~f~~~G~v~~v~i~~~~~--~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~ 351 (437)
.++++|+|+||.. .-++++|+++|++||.|.+|.|+.++. +. +|||||+|.+.++|.+|+..|||+.|+||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4567999999963 237899999999999999999987753 23 899999999999999999999999999999
Q ss_pred EEEEeccCC
Q 013716 352 LEVVLAKPQ 360 (437)
Q Consensus 352 l~v~~a~~~ 360 (437)
|+|.|+.+.
T Consensus 86 i~v~~a~~~ 94 (105)
T 2pe8_A 86 VKACFYNLD 94 (105)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999999753
No 334
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.62 E-value=1.1e-15 Score=122.89 Aligned_cols=79 Identities=14% Similarity=0.181 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCC--eEEEEee
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG--KTIRCSL 182 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g--~~i~v~~ 182 (437)
.-.+|||+|||+.+|+++|+++|++||.|..|+|..+ +++|||||+|.+.++|.+|++.|+|..|.| +.|+|.+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 3456899999999999999999999999999998653 357899999999999999999999999965 9999999
Q ss_pred ccccc
Q 013716 183 SETKN 187 (437)
Q Consensus 183 ~~~~~ 187 (437)
++++.
T Consensus 121 Ak~~~ 125 (164)
T 1sjr_A 121 SKLTS 125 (164)
T ss_dssp CSSSS
T ss_pred ecCCc
Confidence 98763
No 335
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.62 E-value=1.5e-15 Score=129.94 Aligned_cols=78 Identities=18% Similarity=0.252 Sum_probs=72.4
Q ss_pred CcceEEEecCC-CCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 281 QVKALYVKNIP-DNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 281 ~~~~l~V~nLp-~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
..++|||+||| +.+++++|+++|++||.|.+|+|++++ +|||||+|.+.++|.+||..|||..|.|++|+|.+++.
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~---~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK---PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS---TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC---CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 34799999999 899999999999999999999998764 68999999999999999999999999999999999975
Q ss_pred CC
Q 013716 360 QT 361 (437)
Q Consensus 360 ~~ 361 (437)
+.
T Consensus 80 ~~ 81 (205)
T 3tyt_A 80 PA 81 (205)
T ss_dssp SC
T ss_pred Cc
Confidence 43
No 336
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.62 E-value=1.5e-15 Score=132.03 Aligned_cols=83 Identities=19% Similarity=0.481 Sum_probs=79.6
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
...++|||+|||..+|+++|+++|+.||.|..|++++++.+|+++|||||+|.+.++|.+|++.||+..|.|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 46689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccc
Q 013716 184 ETK 186 (437)
Q Consensus 184 ~~~ 186 (437)
.+.
T Consensus 203 ~~~ 205 (216)
T 2qfj_A 203 VTP 205 (216)
T ss_dssp SSC
T ss_pred cCC
Confidence 865
No 337
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.62 E-value=6.4e-16 Score=119.34 Aligned_cols=74 Identities=28% Similarity=0.456 Sum_probs=65.9
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeE-----EE
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKT-----IR 179 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~-----i~ 179 (437)
..++|||+|||+++|+++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||+.||+..|.|+. |+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 4688999999999999999999999999999999765 89999999999999999999999999988 66
Q ss_pred Eeeccc
Q 013716 180 CSLSET 185 (437)
Q Consensus 180 v~~~~~ 185 (437)
|..+.+
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 666554
No 338
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.62 E-value=3e-15 Score=126.54 Aligned_cols=121 Identities=16% Similarity=0.216 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHhccCcccCCCCCeeeecCCCCCCCCc---ccccCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCC
Q 013716 240 NACADYSRQKMLNANFKLDGNTPTISWADPKSTPDHS---AAASQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPP 316 (437)
Q Consensus 240 ~~~a~~a~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~ 316 (437)
...+..|++......+.+......+........+... ......++|||+|||+.+++++|+.+|++||.|..|+|++
T Consensus 64 ~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~ 143 (193)
T 2voo_A 64 FNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRR 143 (193)
T ss_dssp HHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEE
T ss_pred HHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEE
Confidence 4555555554433445556665666555322111100 0122357999999999999999999999999999999998
Q ss_pred CCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCCC
Q 013716 317 GKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (437)
Q Consensus 317 ~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 361 (437)
+..+. +|||||+|.+.++|.+|+..+ +..|+|++|+|.++..-.
T Consensus 144 ~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y~ 188 (193)
T 2voo_A 144 TLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDYF 188 (193)
T ss_dssp CTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC-
T ss_pred CCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHHH
Confidence 87766 999999999999999999865 569999999999987543
No 339
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.6e-15 Score=114.79 Aligned_cols=77 Identities=25% Similarity=0.298 Sum_probs=69.0
Q ss_pred ceEEEecC----CCCCCHHHHHHHHhccCCeeEEEeCCCCCCC--ccEEEEEeCC----HHH----HHHHHH--hcCCce
Q 013716 283 KALYVKNI----PDNTSTEKIKELFQRHGEVTKVVMPPGKSGK--RDFGFIHYAE----RSS----ALKAVK--DTEKYE 346 (437)
Q Consensus 283 ~~l~V~nL----p~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~--~g~afV~f~~----~~~----A~~A~~--~l~g~~ 346 (437)
..|||+|| |+.+++..|+.+|+.||.|.+|.++.++.+. +|||||+|.+ +.+ |.+|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 9999999999999999999999999999875 9999999996 433 899988 789999
Q ss_pred eCCeEEEEEeccC
Q 013716 347 IDGQVLEVVLAKP 359 (437)
Q Consensus 347 i~g~~l~v~~a~~ 359 (437)
|+|++|+|.+.+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998753
No 340
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.61 E-value=1.1e-15 Score=112.07 Aligned_cols=71 Identities=24% Similarity=0.525 Sum_probs=66.0
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhccc----C-------CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCcc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPI----G-------DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKEL 173 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~----G-------~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~ 173 (437)
..++|||+|||+++|+++|+++|++| | .|..+++.+ ++|||||+|.+.++|.+|+ .||+..+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~------~kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS------SSSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC------CCcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 56899999999999999999999999 8 899999864 3789999999999999999 9999999
Q ss_pred CCeEEEEee
Q 013716 174 KGKTIRCSL 182 (437)
Q Consensus 174 ~g~~i~v~~ 182 (437)
.|+.|+|..
T Consensus 78 ~g~~l~V~r 86 (87)
T 2hzc_A 78 QGQSLKIRR 86 (87)
T ss_dssp TTEECEEEC
T ss_pred CCeEEEEeC
Confidence 999999874
No 341
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.61 E-value=1.8e-15 Score=129.55 Aligned_cols=85 Identities=27% Similarity=0.524 Sum_probs=80.4
Q ss_pred CCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEee
Q 013716 103 PPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSL 182 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~ 182 (437)
....++|||+|||+.+|+++|+++|++||.|..|++++++.++.++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35678999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccccc
Q 013716 183 SETKN 187 (437)
Q Consensus 183 ~~~~~ 187 (437)
+.++.
T Consensus 191 a~~~~ 195 (198)
T 2yh0_A 191 ASVGA 195 (198)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98653
No 342
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.60 E-value=7e-16 Score=128.27 Aligned_cols=81 Identities=23% Similarity=0.559 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
..++|||+|||+.+|+++|+++|++||.|..++++.++.+|+++|||||+|.+.++|.+|++ +++..+.|+.|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 35789999999999999999999999999999999998889999999999999999999996 89999999999999998
Q ss_pred cc
Q 013716 185 TK 186 (437)
Q Consensus 185 ~~ 186 (437)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 343
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=4.4e-15 Score=114.64 Aligned_cols=74 Identities=23% Similarity=0.350 Sum_probs=67.3
Q ss_pred eEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccE-EEEEecCHHHHHHHHHHhCCCccCC--eEEEEeecc
Q 013716 108 EVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGF-AFVSFRSKEFAKKAIDELHSKELKG--KTIRCSLSE 184 (437)
Q Consensus 108 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~-afV~f~~~~~A~~a~~~l~~~~~~g--~~i~v~~~~ 184 (437)
.|||+|||+.+|+++|+.+|++||.|..|+|+.. .|| |||+|.+.++|.+|++.|||..|.| +.|+|.+++
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 3679999999999999999999999999998652 276 9999999999999999999999987 699999998
Q ss_pred ccc
Q 013716 185 TKN 187 (437)
Q Consensus 185 ~~~ 187 (437)
++.
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 765
No 344
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.60 E-value=3.7e-15 Score=123.81 Aligned_cols=81 Identities=25% Similarity=0.511 Sum_probs=74.6
Q ss_pred cceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCC-CCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 282 VKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGK-SGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 282 ~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~-~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
.++|||+|||+.+++++|+++|+.||.|..|.+++++ .+. +|||||+|.+.++|.+|+..|||..|.|++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 3689999999999999999999999999999999887 444 89999999999999999999999999999999999986
Q ss_pred CCC
Q 013716 360 QTD 362 (437)
Q Consensus 360 ~~~ 362 (437)
...
T Consensus 82 ~~~ 84 (167)
T 1fxl_A 82 SSA 84 (167)
T ss_dssp CCG
T ss_pred Ccc
Confidence 543
No 345
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.60 E-value=4.3e-15 Score=123.57 Aligned_cols=80 Identities=23% Similarity=0.526 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCC--eEEEEe
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG--KTIRCS 181 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g--~~i~v~ 181 (437)
...++|||+|||..+|+++|+++|++||.|..++++++..+++++|||||+|.+.++|.+|+..||+..+.| ++|+|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 456899999999999999999999999999999999998889999999999999999999999999999988 999998
Q ss_pred ec
Q 013716 182 LS 183 (437)
Q Consensus 182 ~~ 183 (437)
+|
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 346
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.60 E-value=3.7e-15 Score=127.34 Aligned_cols=84 Identities=27% Similarity=0.540 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
...++|||+|||+.+|+++|+++|+.||.|..|+++++..+++++|||||+|.+.++|.+|+.. ++..|.|+.|.|.++
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKA 180 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEEC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEec
Confidence 3568999999999999999999999999999999999998899999999999999999999965 899999999999999
Q ss_pred ccccc
Q 013716 184 ETKNR 188 (437)
Q Consensus 184 ~~~~~ 188 (437)
.++..
T Consensus 181 ~~k~~ 185 (196)
T 1l3k_A 181 LSKQE 185 (196)
T ss_dssp C----
T ss_pred CChhH
Confidence 86643
No 347
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.59 E-value=2.9e-15 Score=116.40 Aligned_cols=77 Identities=23% Similarity=0.399 Sum_probs=69.6
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
...++|||+|| .+++++|+.+|++||.|..|.|.. .+|||||+|.+.++|.+|+..|||..|.|+.|+|.|+.+
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~----~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP----PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET----TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 34579999996 699999999999999999999963 359999999999999999999999999999999999987
Q ss_pred CCC
Q 013716 360 QTD 362 (437)
Q Consensus 360 ~~~ 362 (437)
+..
T Consensus 111 ~~~ 113 (121)
T 2bz2_A 111 QPM 113 (121)
T ss_dssp SCC
T ss_pred CCC
Confidence 644
No 348
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.6e-14 Score=110.96 Aligned_cols=81 Identities=11% Similarity=0.208 Sum_probs=69.3
Q ss_pred cCcceEEEecCCCCCC-----------HHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeC
Q 013716 280 SQVKALYVKNIPDNTS-----------TEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID 348 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t-----------~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~ 348 (437)
..+++|+|.||..... +++|+++|++||.|..|.|. ++. .+|||||+|.+.++|.+|+..|||+.|+
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~-~~~-~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLF-DRH-PDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEE-TTC-TTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEe-cCC-CCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 4568999999954432 57999999999999999774 332 4899999999999999999999999999
Q ss_pred CeEEEEEeccCCCC
Q 013716 349 GQVLEVVLAKPQTD 362 (437)
Q Consensus 349 g~~l~v~~a~~~~~ 362 (437)
|++|+|.|+.++..
T Consensus 91 gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 91 GRQITAQAWDGTTD 104 (112)
T ss_dssp TEECEEEECCSCCC
T ss_pred CcEEEEEEeCCCCC
Confidence 99999999987644
No 349
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.2e-15 Score=111.84 Aligned_cols=77 Identities=31% Similarity=0.522 Sum_probs=66.0
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeec
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLS 183 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~ 183 (437)
...++|||+|||+++|+++|+++|++||.|..|+|+.+ ++|||||+|.+.++|++|+. ....+.|+.|.|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 35689999999999999999999999999999998764 68999999999999986542 234558999999998
Q ss_pred cccc
Q 013716 184 ETKN 187 (437)
Q Consensus 184 ~~~~ 187 (437)
.++.
T Consensus 76 ~~~~ 79 (88)
T 1wf0_A 76 EPKH 79 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 350
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.58 E-value=6.1e-15 Score=124.66 Aligned_cols=79 Identities=27% Similarity=0.450 Sum_probs=72.2
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
..++|||+|||+++|+++|+++|++||.|..|+|+++.. ++++|||||+|.+.++|.+|++.+ +..+.|+.|.|.+..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~-~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTT-CCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCC-CCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 348999999999999999999999999999999999865 999999999999999999999655 568999999999876
Q ss_pred c
Q 013716 185 T 185 (437)
Q Consensus 185 ~ 185 (437)
.
T Consensus 186 ~ 186 (193)
T 2voo_A 186 D 186 (193)
T ss_dssp T
T ss_pred H
Confidence 4
No 351
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.5e-14 Score=111.60 Aligned_cols=76 Identities=21% Similarity=0.414 Sum_probs=65.6
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCC----C-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEE
Q 013716 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSG----K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVV 355 (437)
Q Consensus 281 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~----~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 355 (437)
..++|||+|||+.+++++|+++|++||.|. +.++.+..+ . +|||||+|.+.++|.+||..|+ .++|+.|.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~ 83 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCV 83 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEec
Confidence 457999999999999999999999999999 888776643 4 9999999999999999999984 4778888777
Q ss_pred eccC
Q 013716 356 LAKP 359 (437)
Q Consensus 356 ~a~~ 359 (437)
.+..
T Consensus 84 ~~~~ 87 (114)
T 2dnl_A 84 SSPT 87 (114)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 6543
No 352
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.57 E-value=6.5e-15 Score=114.42 Aligned_cols=77 Identities=21% Similarity=0.490 Sum_probs=70.6
Q ss_pred CCCCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEe
Q 013716 102 LPPNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCS 181 (437)
Q Consensus 102 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~ 181 (437)
.+...++|||+|| ++|+++|+.+|++||.|..|++. +++|||||+|.+.++|.+|+..|++..|.|+.|.|.
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999996 69999999999999999999984 578999999999999999999999999999999999
Q ss_pred ecccc
Q 013716 182 LSETK 186 (437)
Q Consensus 182 ~~~~~ 186 (437)
++.+.
T Consensus 107 ~a~~~ 111 (121)
T 2bz2_A 107 IARKQ 111 (121)
T ss_dssp ECCSS
T ss_pred EeCCC
Confidence 99865
No 353
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.57 E-value=1.1e-14 Score=109.76 Aligned_cols=80 Identities=16% Similarity=0.294 Sum_probs=69.6
Q ss_pred CcceEEEecC--CCCCC--------HHHHHHHHhccCCeeEEEeCCCCCC---C-ccEEEEEeCCHHHHHHHHHhcCCce
Q 013716 281 QVKALYVKNI--PDNTS--------TEKIKELFQRHGEVTKVVMPPGKSG---K-RDFGFIHYAERSSALKAVKDTEKYE 346 (437)
Q Consensus 281 ~~~~l~V~nL--p~~~t--------~~~L~~~f~~~G~v~~v~i~~~~~~---~-~g~afV~f~~~~~A~~A~~~l~g~~ 346 (437)
++++|.|.|+ |..+. .++|++.|++||.|.+|+|+++..+ . +|||||+|.+.++|.+|+..|||+.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4579999998 33343 3689999999999999999988754 3 8999999999999999999999999
Q ss_pred eCCeEEEEEeccCC
Q 013716 347 IDGQVLEVVLAKPQ 360 (437)
Q Consensus 347 i~g~~l~v~~a~~~ 360 (437)
|+||+|+|.|+...
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999998643
No 354
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.56 E-value=1.1e-14 Score=121.90 Aligned_cols=78 Identities=27% Similarity=0.573 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccC---CeEEEEe
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK---GKTIRCS 181 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~---g~~i~v~ 181 (437)
..++|||+|||+.+|+++|+++|++||.|..|+++++.. |+++|||||+|.+.++|.+|++.||+..+. +++|.|.
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~-g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~ 172 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPD-GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVK 172 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCC-CCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEE
Confidence 567899999999999999999999999999999999864 999999999999999999999999998776 4999998
Q ss_pred ec
Q 013716 182 LS 183 (437)
Q Consensus 182 ~~ 183 (437)
++
T Consensus 173 ~a 174 (175)
T 3nmr_A 173 FA 174 (175)
T ss_dssp EC
T ss_pred ec
Confidence 87
No 355
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.7e-14 Score=109.62 Aligned_cols=85 Identities=26% Similarity=0.331 Sum_probs=72.6
Q ss_pred CCCCCCCeEEEcCCCcCC-----------CHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC
Q 013716 101 ALPPNGSEVFIGGLPKDA-----------SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169 (437)
Q Consensus 101 ~~~~~~~~l~v~nLp~~~-----------t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 169 (437)
..+..+++|+|+||.... ++++|+++|++||.|..|.| .++ .++|||||+|.+.++|.+|+..||
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 455678999999994433 26899999999999999966 443 379999999999999999999999
Q ss_pred CCccCCeEEEEeeccccccc
Q 013716 170 SKELKGKTIRCSLSETKNRL 189 (437)
Q Consensus 170 ~~~~~g~~i~v~~~~~~~~l 189 (437)
+..|.|+.|.|.++.++...
T Consensus 86 g~~~~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTTDY 105 (112)
T ss_dssp TCEETTEECEEEECCSCCCS
T ss_pred CCEECCcEEEEEEeCCCCCc
Confidence 99999999999999876543
No 356
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.54 E-value=5.7e-15 Score=127.27 Aligned_cols=79 Identities=23% Similarity=0.389 Sum_probs=70.2
Q ss_pred cCcceEEEecCCCCC---------CHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCcee---
Q 013716 280 SQVKALYVKNIPDNT---------STEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEI--- 347 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~---------t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i--- 347 (437)
...++|||+||+..+ ++++|+.+|++||.|..|+|+.. ||||||+|.+.++|..|+..|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~----kG~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES----KNCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC----CCEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 456899999999988 79999999999999999999864 59999999999999999999999999
Q ss_pred ---------CCeEEEEEeccCCCC
Q 013716 348 ---------DGQVLEVVLAKPQTD 362 (437)
Q Consensus 348 ---------~g~~l~v~~a~~~~~ 362 (437)
.|+.|.|.||+....
T Consensus 208 ~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 208 SDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TSTTGGGGGGSCCCEEEECC----
T ss_pred ccccccccCCCCEEEEEEccCCCC
Confidence 899999999986544
No 357
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.54 E-value=1.4e-14 Score=121.24 Aligned_cols=77 Identities=23% Similarity=0.454 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEEeecc
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRCSLSE 184 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v~~~~ 184 (437)
..++|||+|||+.+|+++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 56799999999999999999999999987665 4568999999999999999999999999999999999999997
Q ss_pred cc
Q 013716 185 TK 186 (437)
Q Consensus 185 ~~ 186 (437)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 358
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.52 E-value=3.8e-14 Score=123.97 Aligned_cols=79 Identities=20% Similarity=0.318 Sum_probs=74.0
Q ss_pred cCcceEEEecCCC-CCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 280 SQVKALYVKNIPD-NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 280 ~~~~~l~V~nLp~-~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
...++|||+|||+ .+++++|+++|+.||.|..|+|++++ +|||||+|.+.++|.+|+..|||..|.|+.|+|.++.
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 4568999999999 99999999999999999999999876 6899999999999999999999999999999999998
Q ss_pred CCC
Q 013716 359 PQT 361 (437)
Q Consensus 359 ~~~ 361 (437)
...
T Consensus 109 ~~~ 111 (229)
T 2adc_A 109 HQN 111 (229)
T ss_dssp CCC
T ss_pred Ccc
Confidence 654
No 359
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.52 E-value=1.9e-14 Score=123.97 Aligned_cols=80 Identities=20% Similarity=0.400 Sum_probs=71.4
Q ss_pred CCCCCCeEEEcCCCcCC---------CHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCc
Q 013716 102 LPPNGSEVFIGGLPKDA---------SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172 (437)
Q Consensus 102 ~~~~~~~l~v~nLp~~~---------t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~ 172 (437)
.....++|||+|||..+ |+++|+.+|++||.|.+|+|+. ++|||||+|.+.++|..|++.|++..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 34578999999999998 7999999999999999999975 47999999999999999999999999
Q ss_pred c------------CCeEEEEeeccccc
Q 013716 173 L------------KGKTIRCSLSETKN 187 (437)
Q Consensus 173 ~------------~g~~i~v~~~~~~~ 187 (437)
| .|+.|.|.++....
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred EeccccccccccCCCCEEEEEEccCCC
Confidence 9 89999999998653
No 360
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.52 E-value=3e-14 Score=107.35 Aligned_cols=82 Identities=20% Similarity=0.305 Sum_probs=72.1
Q ss_pred CCCCeEEEcCC--CcCCC--------HHHHHHhhcccCCeEEEEEeecCCC--CCcccEEEEEecCHHHHHHHHHHhCCC
Q 013716 104 PNGSEVFIGGL--PKDAS--------EEDLRDLCEPIGDVFEVRLMKDKES--GESKGFAFVSFRSKEFAKKAIDELHSK 171 (437)
Q Consensus 104 ~~~~~l~v~nL--p~~~t--------~~~l~~~f~~~G~i~~v~~~~~~~~--~~~~g~afV~f~~~~~A~~a~~~l~~~ 171 (437)
.++++|.|+|+ |..+. +++|++.|++||.|.+|+|+++..+ ++++|+|||+|.+.++|.+|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 36789999999 44443 4689999999999999999988764 468999999999999999999999999
Q ss_pred ccCCeEEEEeeccc
Q 013716 172 ELKGKTIRCSLSET 185 (437)
Q Consensus 172 ~~~g~~i~v~~~~~ 185 (437)
.+.||.|+|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999998764
No 361
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.52 E-value=6.3e-15 Score=110.98 Aligned_cols=71 Identities=18% Similarity=0.274 Sum_probs=63.0
Q ss_pred EecCCCCCCHHHHHHHH------------hccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEE
Q 013716 287 VKNIPDNTSTEKIKELF------------QRHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLE 353 (437)
Q Consensus 287 V~nLp~~~t~~~L~~~f------------~~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 353 (437)
+.||++.+++++|+++| ++||.|.+|.|+++..++ +|||||+|.+.++|.+|+..|||+.|+||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45677777777776666 999999999999887766 99999999999999999999999999999999
Q ss_pred EEec
Q 013716 354 VVLA 357 (437)
Q Consensus 354 v~~a 357 (437)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9987
No 362
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.51 E-value=4e-14 Score=108.67 Aligned_cols=81 Identities=21% Similarity=0.349 Sum_probs=71.9
Q ss_pred CCCeEEEcCCC--cCC---CHHHHHHhhcccCCeEEEEEeecCC----CCCcccEEEEEecCHHHHHHHHHHhCCCccCC
Q 013716 105 NGSEVFIGGLP--KDA---SEEDLRDLCEPIGDVFEVRLMKDKE----SGESKGFAFVSFRSKEFAKKAIDELHSKELKG 175 (437)
Q Consensus 105 ~~~~l~v~nLp--~~~---t~~~l~~~f~~~G~i~~v~~~~~~~----~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g 175 (437)
++++|+|+|+- .++ .+++|++.|++||.|.+|+|+++.. +++++|+|||+|.+.++|.+|++.|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 68999999993 233 3689999999999999999998864 46788999999999999999999999999999
Q ss_pred eEEEEeeccc
Q 013716 176 KTIRCSLSET 185 (437)
Q Consensus 176 ~~i~v~~~~~ 185 (437)
|.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998864
No 363
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.49 E-value=4.6e-14 Score=120.67 Aligned_cols=76 Identities=21% Similarity=0.340 Sum_probs=72.1
Q ss_pred ceEEEecCCC-CCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCCC
Q 013716 283 KALYVKNIPD-NTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (437)
Q Consensus 283 ~~l~V~nLp~-~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 361 (437)
++|||+|||+ .+++++|+++|+.||.|..|+++.++ +|||||+|.+.++|.+|+..|||..|.|+.|+|.++....
T Consensus 4 ~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 4 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 6999999999 99999999999999999999999876 5899999999999999999999999999999999998654
No 364
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.48 E-value=6.1e-14 Score=107.68 Aligned_cols=80 Identities=16% Similarity=0.248 Sum_probs=68.9
Q ss_pred cCcceEEEecCCC--CC---CHHHHHHHHhccCCeeEEEeCCCCCC-----C-ccEEEEEeCCHHHHHHHHHhcCCceeC
Q 013716 280 SQVKALYVKNIPD--NT---STEKIKELFQRHGEVTKVVMPPGKSG-----K-RDFGFIHYAERSSALKAVKDTEKYEID 348 (437)
Q Consensus 280 ~~~~~l~V~nLp~--~~---t~~~L~~~f~~~G~v~~v~i~~~~~~-----~-~g~afV~f~~~~~A~~A~~~l~g~~i~ 348 (437)
.++++|+|.|+-. .+ .+++|++.|++||.|.+|+|++++.+ . +|||||+|.+.++|.+|+..|||+.|+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 3568999999942 22 35899999999999999999887542 2 799999999999999999999999999
Q ss_pred CeEEEEEeccC
Q 013716 349 GQVLEVVLAKP 359 (437)
Q Consensus 349 g~~l~v~~a~~ 359 (437)
||.|+|.|+..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999864
No 365
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.47 E-value=1.7e-13 Score=122.35 Aligned_cols=77 Identities=30% Similarity=0.471 Sum_probs=71.5
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
...++|||+|||+.+|+++|+++|+.||.|..|.|.++ +|||||+|.+.++|.+|+..|||..|.|+.|+|.++.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD----RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 44579999999999999999999999999999999765 49999999999999999999999999999999999975
Q ss_pred C
Q 013716 360 Q 360 (437)
Q Consensus 360 ~ 360 (437)
.
T Consensus 96 ~ 96 (261)
T 3sde_A 96 G 96 (261)
T ss_dssp S
T ss_pred C
Confidence 3
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.46 E-value=2.5e-14 Score=107.67 Aligned_cols=72 Identities=28% Similarity=0.443 Sum_probs=63.5
Q ss_pred EcCCCcCCCHHHHHHhh------------cccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 013716 111 IGGLPKDASEEDLRDLC------------EPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (437)
Q Consensus 111 v~nLp~~~t~~~l~~~f------------~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 178 (437)
+.|||+.+++++|+++| ++||.|.+|+|+++.. ++++|||||+|.+.++|.+|+..|||..+.||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45667777777777666 9999999999998765 8999999999999999999999999999999999
Q ss_pred EEeec
Q 013716 179 RCSLS 183 (437)
Q Consensus 179 ~v~~~ 183 (437)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99876
No 367
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.45 E-value=4e-13 Score=102.29 Aligned_cols=79 Identities=11% Similarity=0.211 Sum_probs=67.7
Q ss_pred cCcceEEEecCCCCCC----------HHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCC
Q 013716 280 SQVKALYVKNIPDNTS----------TEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG 349 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t----------~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g 349 (437)
.++++|.|.|+-.... +++|++.|++||.|.+|.|.++. .+|||||+|.+.++|.+|+..|||+.|+|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~--~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS--AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC--TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC--CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3457899999853322 25889999999999999998764 37999999999999999999999999999
Q ss_pred eEEEEEeccCC
Q 013716 350 QVLEVVLAKPQ 360 (437)
Q Consensus 350 ~~l~v~~a~~~ 360 (437)
|.|+|.|+...
T Consensus 83 R~i~v~~~~~~ 93 (114)
T 3s6e_A 83 KMITAAYVPLP 93 (114)
T ss_dssp EECEEEEECHH
T ss_pred EEEEEEEEcHH
Confidence 99999998643
No 368
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=8.6e-13 Score=97.88 Aligned_cols=66 Identities=21% Similarity=0.281 Sum_probs=57.6
Q ss_pred CCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCCCC
Q 013716 292 DNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQTD 362 (437)
Q Consensus 292 ~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~~ 362 (437)
..+++++|+++|++||.|..|.|+. .++|||||+|.+.++|..|+..+++ +.|++|+|.|++++..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~---~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS---KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES---SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc---CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 4689999999999999999999983 2379999999999999999998554 6799999999986643
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.36 E-value=1.8e-12 Score=117.99 Aligned_cols=75 Identities=21% Similarity=0.412 Sum_probs=66.3
Q ss_pred cCcceEEEec--CCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeC---Ce--EE
Q 013716 280 SQVKALYVKN--IPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEID---GQ--VL 352 (437)
Q Consensus 280 ~~~~~l~V~n--Lp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~---g~--~l 352 (437)
.++++|||+| |++.+|+++|+++|++||.|..|.+.+. ||||||+|.+.++|.+||..|||..+- |+ .|
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~----kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~l 91 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN----KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITL 91 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTT----CSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEEC
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCccccccCCceEE
Confidence 5568999999 5789999999999999999999998763 599999999999999999999999772 45 68
Q ss_pred EEEecc
Q 013716 353 EVVLAK 358 (437)
Q Consensus 353 ~v~~a~ 358 (437)
.|.|+.
T Consensus 92 y~~~~~ 97 (345)
T 3tht_A 92 YLNFVE 97 (345)
T ss_dssp EEEECS
T ss_pred EEEEee
Confidence 888884
No 370
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=4.3e-12 Score=94.10 Aligned_cols=74 Identities=20% Similarity=0.209 Sum_probs=62.9
Q ss_pred CCeEEEcCCC-------cCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 013716 106 GSEVFIGGLP-------KDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (437)
Q Consensus 106 ~~~l~v~nLp-------~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 178 (437)
..+|.|.-.+ ..+|+++|+++|++||.|..|+|+ ++++|||||+|.+.++|.+|++.+++ +.|+.|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 4567776654 458999999999999999999987 46899999999999999999987544 679999
Q ss_pred EEeecccc
Q 013716 179 RCSLSETK 186 (437)
Q Consensus 179 ~v~~~~~~ 186 (437)
+|.++.++
T Consensus 83 ~V~~a~~~ 90 (100)
T 2d9o_A 83 KISWLEGQ 90 (100)
T ss_dssp EEECSSCC
T ss_pred EEEEccCC
Confidence 99998755
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.31 E-value=7.3e-12 Score=95.32 Aligned_cols=78 Identities=21% Similarity=0.330 Sum_probs=66.8
Q ss_pred CCCCCeEEEcCCCc--CC--------CHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCc
Q 013716 103 PPNGSEVFIGGLPK--DA--------SEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKE 172 (437)
Q Consensus 103 ~~~~~~l~v~nLp~--~~--------t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~ 172 (437)
+.++++|.|+|+=. +. .+++|++.|++||.|.+|.|.++. ++|+|||+|.+.++|.+|++.|||..
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 34678899999932 21 245789999999999999986652 58999999999999999999999999
Q ss_pred cCCeEEEEeecc
Q 013716 173 LKGKTIRCSLSE 184 (437)
Q Consensus 173 ~~g~~i~v~~~~ 184 (437)
+.||.|.|.++.
T Consensus 80 f~GR~i~v~~~~ 91 (114)
T 3s6e_A 80 FAGKMITAAYVP 91 (114)
T ss_dssp ETTEECEEEEEC
T ss_pred ECCEEEEEEEEc
Confidence 999999999985
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.30 E-value=4.1e-12 Score=115.64 Aligned_cols=78 Identities=23% Similarity=0.331 Sum_probs=66.1
Q ss_pred CCCCCCCeEEEcC--CCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccC---C
Q 013716 101 ALPPNGSEVFIGG--LPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK---G 175 (437)
Q Consensus 101 ~~~~~~~~l~v~n--Lp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~---g 175 (437)
..+.++++|||+| |++.+|+++|+++|++||.|..|++.. +||||||+|.+.++|++|++.|||..+. |
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 3456788999999 578999999999999999999987743 5799999999999999999999999873 4
Q ss_pred e--EEEEeecc
Q 013716 176 K--TIRCSLSE 184 (437)
Q Consensus 176 ~--~i~v~~~~ 184 (437)
+ .|.|.++.
T Consensus 87 ~~~~ly~~~~~ 97 (345)
T 3tht_A 87 QKITLYLNFVE 97 (345)
T ss_dssp CEEECEEEECS
T ss_pred CceEEEEEEee
Confidence 5 56666663
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=2.4e-11 Score=85.99 Aligned_cols=74 Identities=22% Similarity=0.305 Sum_probs=63.8
Q ss_pred cCcceEEEecCC----CCCCH----HHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeE
Q 013716 280 SQVKALYVKNIP----DNTST----EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQV 351 (437)
Q Consensus 280 ~~~~~l~V~nLp----~~~t~----~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~ 351 (437)
++..+|+|..++ ..+-. .+|.+.|++||.|..+++..++ +||+|.+.++|.+||. |||..+.||.
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~------~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK------MWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS------EEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC------EEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 445688888876 23333 5789999999999999999876 8999999999999998 9999999999
Q ss_pred EEEEeccCC
Q 013716 352 LEVVLAKPQ 360 (437)
Q Consensus 352 l~v~~a~~~ 360 (437)
|+|+++++.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999999764
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=6.4e-11 Score=89.94 Aligned_cols=76 Identities=22% Similarity=0.288 Sum_probs=68.9
Q ss_pred cCcceEEEecCCCC-CCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCC-HHHHHHHHHhcC--CceeCCeEEEEE
Q 013716 280 SQVKALYVKNIPDN-TSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAE-RSSALKAVKDTE--KYEIDGQVLEVV 355 (437)
Q Consensus 280 ~~~~~l~V~nLp~~-~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~-~~~A~~A~~~l~--g~~i~g~~l~v~ 355 (437)
..+..|+|+||+.. ++.++|+++|++||.|..|.+.++. ..|||+|.+ ..+|..|+..|+ +..|.|..+++.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~----~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA----KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC----SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC----CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 45679999999999 9999999999999999999999887 469999999 899999999995 779999999998
Q ss_pred eccC
Q 013716 356 LAKP 359 (437)
Q Consensus 356 ~a~~ 359 (437)
....
T Consensus 92 vL~G 95 (121)
T 1owx_A 92 VLEG 95 (121)
T ss_dssp ECCH
T ss_pred ECCC
Confidence 8653
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=7.7e-11 Score=83.42 Aligned_cols=75 Identities=24% Similarity=0.399 Sum_probs=64.2
Q ss_pred CCCCCeEEEcCCCc----CCCH----HHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccC
Q 013716 103 PPNGSEVFIGGLPK----DASE----EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELK 174 (437)
Q Consensus 103 ~~~~~~l~v~nLp~----~~t~----~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~ 174 (437)
-++..||+|.-+|. ..-. .+|.+.|.+||.|..++++.++ +||+|.+.++|.+|++ |+|..+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~ 74 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELL 74 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEET
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeC
Confidence 45678899998872 3333 5789999999999999998864 8999999999999996 9999999
Q ss_pred CeEEEEeecccc
Q 013716 175 GKTIRCSLSETK 186 (437)
Q Consensus 175 g~~i~v~~~~~~ 186 (437)
||.|+|+.+++.
T Consensus 75 Gr~LkV~lkt~d 86 (91)
T 2dnr_A 75 NRTITIALKSPS 86 (91)
T ss_dssp TEEEEEEECCCS
T ss_pred CeEEEEEeCCCC
Confidence 999999998753
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=1.2e-10 Score=88.44 Aligned_cols=76 Identities=17% Similarity=0.236 Sum_probs=66.6
Q ss_pred CCCCCeEEEcCCCcC-CCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecC-HHHHHHHHHHhC--CCccCCeEE
Q 013716 103 PPNGSEVFIGGLPKD-ASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRS-KEFAKKAIDELH--SKELKGKTI 178 (437)
Q Consensus 103 ~~~~~~l~v~nLp~~-~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~-~~~A~~a~~~l~--~~~~~g~~i 178 (437)
-+.++.|+|+||+.. ++.++|+++|++||.|..|.+.++.. .|||.|.+ ..+|..|+..|+ +..|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 357899999999999 99999999999999999999988754 59999999 899999999985 677888888
Q ss_pred EEeecc
Q 013716 179 RCSLSE 184 (437)
Q Consensus 179 ~v~~~~ 184 (437)
.+....
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 776543
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=3.8e-10 Score=80.18 Aligned_cols=73 Identities=12% Similarity=0.237 Sum_probs=62.9
Q ss_pred cCcceEEEecCCCC-----CCH----HHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCe
Q 013716 280 SQVKALYVKNIPDN-----TST----EKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQ 350 (437)
Q Consensus 280 ~~~~~l~V~nLp~~-----~t~----~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~ 350 (437)
++..+|+|..++.. +-. .+|.+.|++||.|..+++..++ +||+|.+.++|.+||. |||..|.||
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~------~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ------MLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE------EEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc------EEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 45579999988743 322 4689999999999999999886 9999999999999998 999999999
Q ss_pred EEEEEeccC
Q 013716 351 VLEVVLAKP 359 (437)
Q Consensus 351 ~l~v~~a~~ 359 (437)
.|+|++..+
T Consensus 86 ~L~V~~k~~ 94 (95)
T 1ufw_A 86 AVKISGPSS 94 (95)
T ss_dssp EEEEECCCC
T ss_pred EEEEeccCC
Confidence 999998653
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=4.4e-10 Score=79.87 Aligned_cols=76 Identities=17% Similarity=0.245 Sum_probs=64.4
Q ss_pred cCCCCCCCeEEEcCCCcC-----CCH----HHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC
Q 013716 100 LALPPNGSEVFIGGLPKD-----ASE----EDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170 (437)
Q Consensus 100 ~~~~~~~~~l~v~nLp~~-----~t~----~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~ 170 (437)
...-|+..||+|.-++.. +-. .+|.+.|.+||.|..++|+.++ +||+|.+.++|.+||+ |++
T Consensus 9 ~~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG 79 (95)
T 1ufw_A 9 SFQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDG 79 (95)
T ss_dssp CCCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGG
T ss_pred eecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCC
Confidence 345577889999998743 222 4688999999999999998874 9999999999999997 999
Q ss_pred CccCCeEEEEeecc
Q 013716 171 KELKGKTIRCSLSE 184 (437)
Q Consensus 171 ~~~~g~~i~v~~~~ 184 (437)
..+.||.|+|+.-.
T Consensus 80 ~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 80 MKVKGRAVKISGPS 93 (95)
T ss_dssp SEETTEEEEEECCC
T ss_pred eeeCCeEEEEeccC
Confidence 99999999998654
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.87 E-value=2.2e-09 Score=93.11 Aligned_cols=66 Identities=17% Similarity=0.209 Sum_probs=58.5
Q ss_pred CCHHHHHHHHhccCCeeEEEeCCCCCC-----C-ccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccC
Q 013716 294 TSTEKIKELFQRHGEVTKVVMPPGKSG-----K-RDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKP 359 (437)
Q Consensus 294 ~t~~~L~~~f~~~G~v~~v~i~~~~~~-----~-~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 359 (437)
-.+++|++.|++||.|.+|.|+++..+ . +|++||+|.+.++|.+|+..|||+.|+||.|+|.|...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 355789999999999999999754432 4 89999999999999999999999999999999999854
No 380
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.87 E-value=1.2e-08 Score=73.73 Aligned_cols=71 Identities=15% Similarity=0.245 Sum_probs=66.9
Q ss_pred cceEEEecCCCCCCHHHHHHHHhcc-----CCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEe
Q 013716 282 VKALYVKNIPDNTSTEKIKELFQRH-----GEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVL 356 (437)
Q Consensus 282 ~~~l~V~nLp~~~t~~~L~~~f~~~-----G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 356 (437)
.++|-+-|||..++...|+.++.++ |.|+.|.+.++..| |+|+|.+...|-+|...|+|..|.||+|+|.-
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~G----Aivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNG----AIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTE----EEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCc----eEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 4789999999999999999999999 99999999999955 99999999999999999999999999999864
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.83 E-value=1.2e-08 Score=88.44 Aligned_cols=83 Identities=19% Similarity=0.315 Sum_probs=69.5
Q ss_pred CCCCCCeEEEcCCC-----cCCCHHHHHHhhcccCCeEEEEEeecCC----CCCcccEEEEEecCHHHHHHHHHHhCCCc
Q 013716 102 LPPNGSEVFIGGLP-----KDASEEDLRDLCEPIGDVFEVRLMKDKE----SGESKGFAFVSFRSKEFAKKAIDELHSKE 172 (437)
Q Consensus 102 ~~~~~~~l~v~nLp-----~~~t~~~l~~~f~~~G~i~~v~~~~~~~----~~~~~g~afV~f~~~~~A~~a~~~l~~~~ 172 (437)
.....+.+.+.|+- ..-.+++|++.|++||.|.++.|+++.. +++++|++||+|.+.++|.+|+..|||..
T Consensus 120 ~~~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~ 199 (222)
T 3dxb_A 120 SAMESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRW 199 (222)
T ss_dssp SCCBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCB
T ss_pred cccccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCce
Confidence 34455667777763 2345678999999999999999986544 45899999999999999999999999999
Q ss_pred cCCeEEEEeecc
Q 013716 173 LKGKTIRCSLSE 184 (437)
Q Consensus 173 ~~g~~i~v~~~~ 184 (437)
+.||.|.|.++.
T Consensus 200 ~~gr~i~~~~~~ 211 (222)
T 3dxb_A 200 FAGRKVVAEVYD 211 (222)
T ss_dssp SSSSBCEEEECC
T ss_pred ECCeEEEEEEcC
Confidence 999999999875
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.57 E-value=4.8e-07 Score=65.49 Aligned_cols=73 Identities=22% Similarity=0.271 Sum_probs=67.2
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhccc-----CCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEE
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPI-----GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIR 179 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~-----G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~ 179 (437)
..++|-|-|||..++...|+.++..+ |.|..|.+..+.. =|+|+|.+...|-+|.-.|+|..|.||+|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 47999999999999999999999999 9999999988854 599999999999999999999999999999
Q ss_pred Eeec
Q 013716 180 CSLS 183 (437)
Q Consensus 180 v~~~ 183 (437)
|...
T Consensus 94 ~gTv 97 (117)
T 2l9w_A 94 SGTI 97 (117)
T ss_dssp EECH
T ss_pred ecCH
Confidence 8643
No 383
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=1.8e-05 Score=56.94 Aligned_cols=87 Identities=22% Similarity=0.318 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcc----c-CCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEE
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEP----I-GDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTI 178 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~----~-G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i 178 (437)
...++|.|.|||..+.++.|.-+|+. - |.|..+.... +-|+|+|.+...|++.|+. ....|.+..|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 35678999999999999999999966 2 4888888754 3699999999999999943 5778889999
Q ss_pred EEeeccc--cccccccCCCCCCC
Q 013716 179 RCSLSET--KNRLFIGNVPKNWT 199 (437)
Q Consensus 179 ~v~~~~~--~~~l~v~nl~~~~~ 199 (437)
.|...-+ ..++++.+|++.++
T Consensus 77 sV~P~~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 77 SLRPAPPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEEECCCCCCCCCCCCSCCCCCC
T ss_pred EEEcCCCCCcceEeeecCCCCCC
Confidence 9987654 57899999998764
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.99 E-value=4e-05 Score=55.49 Aligned_cols=74 Identities=20% Similarity=0.148 Sum_probs=62.4
Q ss_pred ceEEEecCCCCC-C----HHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEec
Q 013716 283 KALYVKNIPDNT-S----TEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLA 357 (437)
Q Consensus 283 ~~l~V~nLp~~~-t----~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a 357 (437)
++|+|.||+..+ . .+.++.+|..|+.+.....++.- .-..|.|.+.++|.+|-..||+..|.|+.|+|-|+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF----RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFg 81 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF----KRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFA 81 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT----TEEEEECSSTTHHHHHHHTSTTSEETTEECEEECC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc----eEEEEEeCChHHHHHHHHHhccceecCceeEEEec
Confidence 689999998655 2 25779999999988877666654 24799999999999999999999999999999999
Q ss_pred cCC
Q 013716 358 KPQ 360 (437)
Q Consensus 358 ~~~ 360 (437)
.+.
T Consensus 82 q~~ 84 (104)
T 1wey_A 82 QTL 84 (104)
T ss_dssp CCS
T ss_pred CCC
Confidence 743
No 385
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.95 E-value=0.00018 Score=51.84 Aligned_cols=76 Identities=21% Similarity=0.259 Sum_probs=63.0
Q ss_pred cCcceEEEecCCCCCCHHHHHHHHhc-----cCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEE
Q 013716 280 SQVKALYVKNIPDNTSTEKIKELFQR-----HGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEV 354 (437)
Q Consensus 280 ~~~~~l~V~nLp~~~t~~~L~~~f~~-----~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 354 (437)
...++|.|.|||..++++.|.-+|+. =|.|..|.... +-|+|+|.+...|.+++.+ ..|.|++..|.|
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV 78 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQ-ADHELHGAQLSL 78 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcC-CcceecCeEEEE
Confidence 34579999999999999999999987 24788888766 2499999999999999974 478999999999
Q ss_pred EeccCCCC
Q 013716 355 VLAKPQTD 362 (437)
Q Consensus 355 ~~a~~~~~ 362 (437)
.-..+...
T Consensus 79 ~P~~~~~~ 86 (104)
T 2dhx_A 79 RPAPPRAP 86 (104)
T ss_dssp EECCCCCC
T ss_pred EcCCCCCc
Confidence 87655544
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.87 E-value=3.2e-05 Score=55.98 Aligned_cols=74 Identities=19% Similarity=0.189 Sum_probs=63.8
Q ss_pred CCeEEEcCCCcCC-C----HHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCCeEEEE
Q 013716 106 GSEVFIGGLPKDA-S----EEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKGKTIRC 180 (437)
Q Consensus 106 ~~~l~v~nLp~~~-t----~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~i~v 180 (437)
..+|+|.||+.++ . .+.++.+|..|+.+......+... -..|.|.+.++|.+|...||+..+.|+.|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4689999999865 2 257899999999999888876543 4799999999999999999999999999999
Q ss_pred eeccc
Q 013716 181 SLSET 185 (437)
Q Consensus 181 ~~~~~ 185 (437)
.++++
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 98873
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.77 E-value=9.6e-05 Score=52.68 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=55.8
Q ss_pred CeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCC--cccEEEEEecCHHHHHHHHHHhCCCccC
Q 013716 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGE--SKGFAFVSFRSKEFAKKAIDELHSKELK 174 (437)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~--~~g~afV~f~~~~~A~~a~~~l~~~~~~ 174 (437)
+.|.||+||+.+|++++.+.+..+..+.....+.-+.+.. .-.-|||.|.+.+++....+.++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4699999999999999999999998887777766543322 2234999999999999999999998764
No 388
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.68 E-value=0.00017 Score=51.35 Aligned_cols=76 Identities=12% Similarity=0.166 Sum_probs=60.3
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC----ccEEEEEeCCHHHHHHHHHhcCCceeCCe-----EEE
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK----RDFGFIHYAERSSALKAVKDTEKYEIDGQ-----VLE 353 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~i~g~-----~l~ 353 (437)
.+|.|++||+.+|++++.+.++....+........+... -.-|||.|.+.+++..-...++|+.|-+. +..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 479999999999999999999998887776665444221 34699999999999999999999977532 345
Q ss_pred EEecc
Q 013716 354 VVLAK 358 (437)
Q Consensus 354 v~~a~ 358 (437)
|.+|.
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 66663
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.36 E-value=0.00093 Score=49.85 Aligned_cols=72 Identities=19% Similarity=0.206 Sum_probs=57.9
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCC-eEEEEEecc
Q 013716 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDG-QVLEVVLAK 358 (437)
Q Consensus 281 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g-~~l~v~~a~ 358 (437)
..+.|.|-+.|... ...|...|++||.|.+...... ...-.|+|.+..+|.+||.+ ||..|+| -.|-|....
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~----~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNT----GNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSS----SSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCC----CCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECC
Confidence 34678999998775 5667889999999998887322 35899999999999999985 9999985 667776654
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.29 E-value=0.00089 Score=47.53 Aligned_cols=56 Identities=23% Similarity=0.420 Sum_probs=45.4
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 169 (437)
....++| ++|+.+...||.++|+.||.| .|+-+-|- .|||.|.+++.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 4456677 999999999999999999954 44444442 69999999999999998663
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.24 E-value=0.0011 Score=49.37 Aligned_cols=71 Identities=14% Similarity=0.213 Sum_probs=56.2
Q ss_pred CCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCCCccCC-eEEEEeec
Q 013716 105 NGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHSKELKG-KTIRCSLS 183 (437)
Q Consensus 105 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g-~~i~v~~~ 183 (437)
..+-|.|-+.|+.. ...|..+|++||.|+...... ...+..|.|.+..+|++|| ..||..+.| --|=|.+.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p~ 94 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKPC 94 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEEC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEEC
Confidence 35679999999986 557778999999999888622 2458999999999999999 569999875 44555544
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.13 E-value=0.0012 Score=46.84 Aligned_cols=54 Identities=19% Similarity=0.330 Sum_probs=43.9
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcC
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 343 (437)
..++| +.|..+...||.++|+.||.|. |..+.+. .|||.|.+++.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT-----sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT-----SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT-----EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC-----eEEEEecCHHHHHHHHHhcc
Confidence 45666 9999999999999999998443 4444443 69999999999999998763
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.11 E-value=0.0013 Score=47.13 Aligned_cols=76 Identities=11% Similarity=0.115 Sum_probs=56.4
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCC----ccEEEEEeCCHHHHHHHHHhcCCceeCC-----eEEE
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGK----RDFGFIHYAERSSALKAVKDTEKYEIDG-----QVLE 353 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~i~g-----~~l~ 353 (437)
-+|.|+.||+.+|++++.+.++..-.+........+... -.-|||.|.+.++...-...++|+.|-+ -+..
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~ 89 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAV 89 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeE
Confidence 589999999999999988888775455444443333211 2359999999999999999999997754 2566
Q ss_pred EEecc
Q 013716 354 VVLAK 358 (437)
Q Consensus 354 v~~a~ 358 (437)
|.||.
T Consensus 90 VE~AP 94 (97)
T 2l08_A 90 VEFAP 94 (97)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 77763
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.05 E-value=0.00078 Score=48.21 Aligned_cols=69 Identities=17% Similarity=0.141 Sum_probs=49.6
Q ss_pred CCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCC--cccEEEEEecCHHHHHHHHHHhCCCccC
Q 013716 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGE--SKGFAFVSFRSKEFAKKAIDELHSKELK 174 (437)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~--~~g~afV~f~~~~~A~~a~~~l~~~~~~ 174 (437)
+-.|.||.||+.+|++++.+.+..+-.+.....+.-+.+.. .-.-|||.|.+.++.....+..+|..+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 34699999999999999998887765543333332222111 1123999999999999999999887653
No 395
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.96 E-value=0.001 Score=47.40 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=44.5
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcC
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTE 343 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 343 (437)
..++| +.|..+...+|.++|+.||. ..|..+.+. .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT-----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT-----EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC-----eEEEEecCHHHHHHHHHhcc
Confidence 35666 99999999999999999993 345555553 69999999999999999764
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.90 E-value=0.0014 Score=46.64 Aligned_cols=54 Identities=26% Similarity=0.444 Sum_probs=43.9
Q ss_pred CeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC
Q 013716 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169 (437)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 169 (437)
..++| ++|+.+...+|.++|+.||.| .|+-+-|- .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34566 999999999999999999943 45544442 69999999999999998764
No 397
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.53 E-value=0.0028 Score=47.91 Aligned_cols=76 Identities=18% Similarity=0.272 Sum_probs=55.6
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCCeeE-EEeCCCCC-------------C--CccEEEEEeCCHHHHHHHHHhcCCce
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHGEVTK-VVMPPGKS-------------G--KRDFGFIHYAERSSALKAVKDTEKYE 346 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~-v~i~~~~~-------------~--~~g~afV~f~~~~~A~~A~~~l~g~~ 346 (437)
..|.|-+.|...+. .+...|++||.|.. +.+.+... . ......|+|.+..+|.+||.. ||..
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAV 85 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCE
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeE
Confidence 46778888766555 46689999999875 32222100 0 135679999999999999985 9999
Q ss_pred eCCeEEEEEeccCC
Q 013716 347 IDGQVLEVVLAKPQ 360 (437)
Q Consensus 347 i~g~~l~v~~a~~~ 360 (437)
|+|..|-|....+.
T Consensus 86 i~G~mIGV~Py~~~ 99 (132)
T 3p3d_A 86 FNGVLLGVIPYTKD 99 (132)
T ss_dssp ETTEECEEEECCHH
T ss_pred eCcEEEEEEECCHH
Confidence 99998888877543
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.89 E-value=0.0052 Score=57.92 Aligned_cols=55 Identities=9% Similarity=0.262 Sum_probs=42.7
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHh
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~ 341 (437)
+.|+|. .|..+++.+|.++|++||.|.++.+..++. .||.|+|.+.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS---EEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC---eEEEEEeCCHHHHHHHHhc
Confidence 689997 799999999999999999999999987653 6999999999999877654
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.73 E-value=0.011 Score=44.77 Aligned_cols=77 Identities=9% Similarity=0.167 Sum_probs=54.2
Q ss_pred CCeEEEcCCCcCCCHHHHHHhhcccCCeEEEE-Eee------------cCCCC-CcccEEEEEecCHHHHHHHHHHhCCC
Q 013716 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVR-LMK------------DKESG-ESKGFAFVSFRSKEFAKKAIDELHSK 171 (437)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~-~~~------------~~~~~-~~~g~afV~f~~~~~A~~a~~~l~~~ 171 (437)
...|.|-+.|...+. .|.+.|++||.|..-. ..+ .+... ....+..|+|.+..+|.+|| ..||.
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL-~~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDAL-LENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHH-TTTTC
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHH-HhCCe
Confidence 456888899877766 5666899999986621 111 00000 12457899999999999999 56999
Q ss_pred ccCCeEEEEeecc
Q 013716 172 ELKGKTIRCSLSE 184 (437)
Q Consensus 172 ~~~g~~i~v~~~~ 184 (437)
.|.|.-|=|.+..
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999877676664
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.52 E-value=0.0068 Score=57.11 Aligned_cols=55 Identities=20% Similarity=0.211 Sum_probs=42.8
Q ss_pred CCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHH
Q 013716 106 GSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAID 166 (437)
Q Consensus 106 ~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~ 166 (437)
.|+|+|. .|..+++.+|.++|++||+|.++.+..++ .-||.|+|.+.+++.+++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHh
Confidence 4889997 79999999999999999999999887653 2699999999999998874
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.50 E-value=1.6 Score=42.07 Aligned_cols=55 Identities=18% Similarity=0.296 Sum_probs=45.1
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCC
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEK 344 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 344 (437)
..++|+ +|..+...+|.+.|+.||. ..|+.+.+. .|||.|.+.+.|..++..++.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widdt-----~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDDT-----SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSSS-----EEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcCC-----eEEEEECCHHHHHHHHHHHHh
Confidence 466665 8999999999999999995 456655554 699999999999999998753
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.21 E-value=1.4 Score=42.38 Aligned_cols=55 Identities=24% Similarity=0.407 Sum_probs=44.3
Q ss_pred CeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhCC
Q 013716 107 SEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELHS 170 (437)
Q Consensus 107 ~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~ 170 (437)
..++|+ +|..+...+|.++|+.||.| .|+.+-+ ..|||.|.+.+.|..++..+..
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 466666 99999999999999999954 5544333 3699999999999999988753
No 403
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=75.63 E-value=7.4 Score=26.08 Aligned_cols=60 Identities=8% Similarity=0.146 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHhccC-----CeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEecc
Q 013716 292 DNTSTEKIKELFQRHG-----EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAK 358 (437)
Q Consensus 292 ~~~t~~~L~~~f~~~G-----~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 358 (437)
..+...+|..++..-+ .|-.|.|... |.||+- ....|..++..|++..+.|+.+.|+.++
T Consensus 11 ~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~------~s~v~v-~~~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 11 KKIRAVDFVGTIAKIDGVSADDIGIITIMDN------ASYVEI-LNGKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp ----CHHHHHHHHTSTTCCGGGEEEEEECSS------CEEEEE-CTTCHHHHHHHHTTCCC---CCCEEECC
T ss_pred cCCCHHHHHHHHHHccCCChhhccEEEEeCC------cEEEEE-CHHHHHHHHHHhccccCcCceEEEEECC
Confidence 4567777777777644 3557777553 689988 4667888999999999999999998764
No 404
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=66.78 E-value=7.2 Score=30.97 Aligned_cols=51 Identities=16% Similarity=0.184 Sum_probs=37.9
Q ss_pred ceEEEecCCC-C--------CCHHHHHHHH--hccCCeeEEEeCCCCCCCccEEEEEeCCHHH
Q 013716 283 KALYVKNIPD-N--------TSTEKIKELF--QRHGEVTKVVMPPGKSGKRDFGFIHYAERSS 334 (437)
Q Consensus 283 ~~l~V~nLp~-~--------~t~~~L~~~f--~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~ 334 (437)
..+.|.|+|. . .+...|++.| +.|..+ .|+.+.+..+.+|+|.|.|.+--.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~-kv~~l~~~~Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPT-RVRPLWNYLGHSGTAIVEFNKDWN 74 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCS-EEEEEECSSBEEEEEEEECCSSHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCc-eeEecccCCCCceeEEEEecCChH
Confidence 5678889886 2 3457899977 889654 477777777778999999986443
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=62.80 E-value=34 Score=23.43 Aligned_cols=69 Identities=19% Similarity=0.200 Sum_probs=51.5
Q ss_pred CcceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCc-------eeCCeEEE
Q 013716 281 QVKALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKY-------EIDGQVLE 353 (437)
Q Consensus 281 ~~~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~-------~i~g~~l~ 353 (437)
+.+-+.|-|+|..+-..++--.....|---.|..+. |.|.|.|.+.++...|+..|-++ .|.|..+.
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid------gqamirfqnsdeqrlaiqkllnhnnnklqieirgqicd 84 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQICD 84 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS------SCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTEEEE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec------CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcceeee
Confidence 446688999999998888877777777666665544 56999999999999999877322 45566665
Q ss_pred EE
Q 013716 354 VV 355 (437)
Q Consensus 354 v~ 355 (437)
|-
T Consensus 85 vi 86 (129)
T 4eyt_A 85 VI 86 (129)
T ss_dssp EE
T ss_pred ee
Confidence 53
No 406
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=56.28 E-value=36 Score=23.48 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=40.1
Q ss_pred EEEecCCCCCCHHHHHHHHhc-cC-CeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhc
Q 013716 285 LYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDT 342 (437)
Q Consensus 285 l~V~nLp~~~t~~~L~~~f~~-~G-~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l 342 (437)
-++-.+....+..+|++.+.. |+ .|..|..+..+.+. .-|||++..-.+|.....++
T Consensus 25 ~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~-KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 25 KLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGE-KKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSC-EEEEEEECTTSCHHHHHHHS
T ss_pred EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCc-eEEEEEcCCCCcHHHHHHhh
Confidence 445556778999999999987 76 56777655444332 34999998888777665543
No 407
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat repeat, transcription factor, nucleus; 2.85A {Saccharomyces cerevisiae}
Probab=55.86 E-value=2.1 Score=41.96 Aligned_cols=9 Identities=11% Similarity=0.039 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 013716 158 KEFAKKAID 166 (437)
Q Consensus 158 ~~~A~~a~~ 166 (437)
++-+.+.+.
T Consensus 415 ~~~~~~Fl~ 423 (649)
T 3tj1_A 415 LELMDSFLV 423 (649)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 408
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=49.26 E-value=61 Score=22.19 Aligned_cols=58 Identities=17% Similarity=0.276 Sum_probs=47.1
Q ss_pred CCCCeEEEcCCCcCCCHHHHHHhhcccCCeEEEEEeecCCCCCcccEEEEEecCHHHHHHHHHHhC
Q 013716 104 PNGSEVFIGGLPKDASEEDLRDLCEPIGDVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAIDELH 169 (437)
Q Consensus 104 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 169 (437)
...|-|.|-|+|..+-..++.-.....|--..|..+ -|.|.|.|.+.+...-|+..|-
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHH
Confidence 356889999999999999988888888866666543 3569999999999999997764
No 409
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=45.52 E-value=38 Score=26.85 Aligned_cols=48 Identities=23% Similarity=0.264 Sum_probs=35.5
Q ss_pred eEEEcCCCc-C--------CCHHHHHHhh--cccCCeEEEEEeecCCCCCcccEEEEEecCH
Q 013716 108 EVFIGGLPK-D--------ASEEDLRDLC--EPIGDVFEVRLMKDKESGESKGFAFVSFRSK 158 (437)
Q Consensus 108 ~l~v~nLp~-~--------~t~~~l~~~f--~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~ 158 (437)
++.|-|+|. . .+..+|++.| ..|.++. |+.+..+ .-.+|+|.|.|.+-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKD 72 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCC
Confidence 577888887 2 4557899977 9998865 5555554 34788999999875
No 410
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=39.42 E-value=63 Score=22.22 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=37.7
Q ss_pred EEEecCCCCCCHHHHHHHHhc-cC-CeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHH
Q 013716 285 LYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVK 340 (437)
Q Consensus 285 l~V~nLp~~~t~~~L~~~f~~-~G-~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~ 340 (437)
-++-.+....+..+|++.+.. |+ .|..|..+..+.+. --|||++..-.+|.....
T Consensus 24 ~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~-KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 24 KLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGE-KKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSS-EEEEEEECTTSCHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCc-eEEEEEECCCCcHHHHHH
Confidence 445567788999999999987 77 56777655444322 349999987766655443
No 411
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=33.66 E-value=1.3e+02 Score=21.34 Aligned_cols=68 Identities=15% Similarity=0.187 Sum_probs=47.5
Q ss_pred EecCCCCCCHHHHHHHHhc-cCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHhcCCceeCCeEEEEEeccCCC
Q 013716 287 VKNIPDNTSTEKIKELFQR-HGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKDTEKYEIDGQVLEVVLAKPQT 361 (437)
Q Consensus 287 V~nLp~~~t~~~L~~~f~~-~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~~ 361 (437)
|-.++..+.-++|...... ||.-..++..... ..|-..+.++-.+||..|+-. -.-+.|+|-+..++.
T Consensus 21 Ii~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~E------llIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~~ 89 (103)
T 2cu1_A 21 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYTNNE------LVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVINGS 89 (103)
T ss_dssp EEEEESSCCHHHHHHHHHHHHSSCEEEEECSSS------SCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECCC
T ss_pred EEeccCCccHHHHHHHHHHHhCCeeeEEEecce------EEEeccCHHHHHHHHHHHccC-CcccceEEEEecCCC
Confidence 3355778888888766654 8987777776332 678888999999999977532 344556665555543
No 412
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=30.85 E-value=1e+02 Score=23.77 Aligned_cols=56 Identities=20% Similarity=0.280 Sum_probs=38.4
Q ss_pred EEEecCCCCCCHHHHHHHHhc-cC-CeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHh
Q 013716 285 LYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (437)
Q Consensus 285 l~V~nLp~~~t~~~L~~~f~~-~G-~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~ 341 (437)
-++--+....+..+|++.+.. |+ .|..|..+....+. --|||++..-.+|......
T Consensus 89 ~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~-KKAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 89 TMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGN-KKAYIRLAADSDSLTLANK 146 (150)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSC-EEEEEEECSSSCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCc-EEEEEEcCCCCcHHHHHHh
Confidence 344456778999999988887 66 46777655444332 2499999877777765543
No 413
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=30.61 E-value=1.3e+02 Score=21.40 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=30.4
Q ss_pred cCCCHHHHHHhh-cccC----CeEEEEEeecCCCCCcccEEEEEecCHHHHHHHH
Q 013716 116 KDASEEDLRDLC-EPIG----DVFEVRLMKDKESGESKGFAFVSFRSKEFAKKAI 165 (437)
Q Consensus 116 ~~~t~~~l~~~f-~~~G----~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~ 165 (437)
...+..+|++.+ ..|+ .|.-..+....-.|++.|||.| |.+.+.|++.-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 567778888766 4444 2333334444445678888866 77777776554
No 414
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=30.42 E-value=1.1e+02 Score=23.37 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=38.5
Q ss_pred EEEecCCCCCCHHHHHHHHhc-cC-CeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHh
Q 013716 285 LYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (437)
Q Consensus 285 l~V~nLp~~~t~~~L~~~f~~-~G-~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~ 341 (437)
-++--+....+..+|++.+.. |+ .|..|..+....+. --|||++..-.+|......
T Consensus 81 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~-KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 81 ILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGT-KKAYVRLTADYDALDIANR 138 (142)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSC-EEEEEEECTTCCHHHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCc-eEEEEEeCCCCcHHHHHHh
Confidence 444456778999999988887 66 57777655444332 2499999877777665443
No 415
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=29.02 E-value=12 Score=34.13 Aligned_cols=13 Identities=23% Similarity=0.322 Sum_probs=8.9
Q ss_pred CCCHHHHHHHHhc
Q 013716 293 NTSTEKIKELFQR 305 (437)
Q Consensus 293 ~~t~~~L~~~f~~ 305 (437)
.+++++|+++...
T Consensus 228 ~vt~~~l~~i~~~ 240 (358)
T 2pk2_A 228 TVTLELLDELTHE 240 (358)
T ss_dssp SCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 4677777777654
No 416
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=27.33 E-value=1.4e+02 Score=21.33 Aligned_cols=47 Identities=13% Similarity=0.099 Sum_probs=29.7
Q ss_pred cCCCHHHHHHhh-cccC----CeEEEEEeecCCCCCcccEEEEEecCHHHHHH
Q 013716 116 KDASEEDLRDLC-EPIG----DVFEVRLMKDKESGESKGFAFVSFRSKEFAKK 163 (437)
Q Consensus 116 ~~~t~~~l~~~f-~~~G----~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~ 163 (437)
...+..+|++.+ ..|+ .|.-..+....-.|++.|||.| |.+.+.|++
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 567788888766 4444 2333334445545778888876 777777764
No 417
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=26.51 E-value=1.3e+02 Score=19.14 Aligned_cols=54 Identities=9% Similarity=0.071 Sum_probs=40.9
Q ss_pred ceEEEecCCCCCCHHHHHHHHhccCCeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHh
Q 013716 283 KALYVKNIPDNTSTEKIKELFQRHGEVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (437)
Q Consensus 283 ~~l~V~nLp~~~t~~~L~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~ 341 (437)
.++.|.++.-.-=...|...+.. ..|..+.+.... +.+.|.|.+.+....+|..
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~----~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE----AVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE----EEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC----CEEEEEECCHHHHHHHHHH
Confidence 46889999877667788889988 788888885544 5688888855666667765
No 418
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=25.36 E-value=20 Score=38.14 Aligned_cols=20 Identities=15% Similarity=0.112 Sum_probs=12.7
Q ss_pred cEEEEEecCHHHHHHHHHHh
Q 013716 149 GFAFVSFRSKEFAKKAIDEL 168 (437)
Q Consensus 149 g~afV~f~~~~~A~~a~~~l 168 (437)
+.++|...+.+-|......+
T Consensus 228 ~rvlvl~PtraLa~Q~~~~l 247 (1108)
T 3l9o_A 228 QRVIYTSPIKALSNQKYREL 247 (1108)
T ss_dssp CEEEEEESSHHHHHHHHHHH
T ss_pred CeEEEEcCcHHHHHHHHHHH
Confidence 45777777777666555443
No 419
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=24.59 E-value=1.1e+02 Score=23.60 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=37.9
Q ss_pred EEEecCCCCCCHHHHHHHHhc-cC-CeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHh
Q 013716 285 LYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (437)
Q Consensus 285 l~V~nLp~~~t~~~L~~~f~~-~G-~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~ 341 (437)
.++--+....+..+|++.+.. |+ .|..|..+....+. --|||++..-.+|......
T Consensus 91 ~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~-KKAyV~L~~~~daldvAnk 148 (152)
T 3iz5_X 91 TLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGK-KKAYVKLTPDYDALDVANK 148 (152)
T ss_dssp EEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSS-EEEEEEECTTSCHHHHHGG
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCc-eEEEEEcCCCCcHHHHHHh
Confidence 344456778999999988877 66 46777655444332 2499999877777765443
No 420
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=23.74 E-value=1.6e+02 Score=22.91 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=38.2
Q ss_pred EEEecCCCCCCHHHHHHHHhc-cC-CeeEEEeCCCCCCCccEEEEEeCCHHHHHHHHHh
Q 013716 285 LYVKNIPDNTSTEKIKELFQR-HG-EVTKVVMPPGKSGKRDFGFIHYAERSSALKAVKD 341 (437)
Q Consensus 285 l~V~nLp~~~t~~~L~~~f~~-~G-~v~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~ 341 (437)
-|+--+....+..+|++.+.. |+ .|..|..+....+. --|||++..-.+|......
T Consensus 95 ~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~-KKAiVtL~~g~~aid~~~k 152 (156)
T 2zkr_s 95 TLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGE-KKAYVRLAPDYDALDVANK 152 (156)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSC-EEEEEEECTTSCHHHHHHH
T ss_pred cEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCc-eEEEEEECCCCcHHHHHHh
Confidence 345556778999999999887 76 57777655444332 3499999877666655543
No 421
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=23.68 E-value=1.7e+02 Score=21.05 Aligned_cols=48 Identities=17% Similarity=0.068 Sum_probs=29.3
Q ss_pred cCCCHHHHHHhh-cccCC----eEEEEEeecCCCCCcccEEEEEecCHHHHHHH
Q 013716 116 KDASEEDLRDLC-EPIGD----VFEVRLMKDKESGESKGFAFVSFRSKEFAKKA 164 (437)
Q Consensus 116 ~~~t~~~l~~~f-~~~G~----i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a 164 (437)
...+..+|++.+ ..|+. |.-..+....-.|++.|||.| |.+.+.|++.
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 456778888755 44552 222333344445678888876 7788777643
No 422
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=22.44 E-value=1.2e+02 Score=20.97 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=20.9
Q ss_pred CeEEEEEeecCCCCCcccEEEEEec
Q 013716 132 DVFEVRLMKDKESGESKGFAFVSFR 156 (437)
Q Consensus 132 ~i~~v~~~~~~~~~~~~g~afV~f~ 156 (437)
.|.+|++.+-...|+-++||-|+|.
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~d 29 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLD 29 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEET
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEEC
Confidence 5788888777666889999999987
No 423
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A {Saccharomyces cerevisiae}
Probab=21.64 E-value=19 Score=35.98 Aligned_cols=8 Identities=25% Similarity=0.447 Sum_probs=0.0
Q ss_pred HHHHHHhh
Q 013716 120 EEDLRDLC 127 (437)
Q Consensus 120 ~~~l~~~f 127 (437)
++.|...|
T Consensus 757 eekv~~~i 764 (956)
T 4aco_A 757 EEKVTRII 764 (956)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 33333333
No 424
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=20.47 E-value=66 Score=31.96 Aligned_cols=54 Identities=9% Similarity=0.270 Sum_probs=38.3
Q ss_pred CCCCCCHHHHHHHHh----ccCCeeEEEeCCCCCCC-ccEEEEEeCCHHHHHHHHHhcC
Q 013716 290 IPDNTSTEKIKELFQ----RHGEVTKVVMPPGKSGK-RDFGFIHYAERSSALKAVKDTE 343 (437)
Q Consensus 290 Lp~~~t~~~L~~~f~----~~G~v~~v~i~~~~~~~-~g~afV~f~~~~~A~~A~~~l~ 343 (437)
.+...+--+|..+|- .+|.|+.+.|...+... +.+++|.|.+.++|.+|+..+-
T Consensus 351 ~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i~ 409 (658)
T 4bby_A 351 GPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREIA 409 (658)
T ss_dssp CSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred ccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHHH
Confidence 344444447888883 57889988765444333 5678999999999999987764
Done!