BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 013717
(437 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 111/228 (48%), Gaps = 24/228 (10%)
Query: 205 KKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG 264
K++ H +V L + +I + S D ++++W + L ++ H +AV + + G
Sbjct: 166 KRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM 225
Query: 265 TVYTGSADRKIRVW--AKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSIL 322
V T S DR I VW A P + L L H++AVN + D V SG DR+I
Sbjct: 226 MV-TCSKDRSIAVWDMASPTD---ITLRRVLVGHRAAVNVVDFDDKYIVSASG--DRTIK 279
Query: 323 VWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFG-CLAV 381
VW+ S V T L GH + I CL L++SGS+D T+R+W D G CL V
Sbjct: 280 VWN--TSTCEFVRT--LNGHKRGIACLQYRDRLVVSGSSDNTIRLW----DIECGACLRV 331
Query: 382 LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSSP 429
LEGH + V+ + + + SG+ DG+I+ W + + +P
Sbjct: 332 LEGHEELVRCIRFDNKR-------IVSGAYDGKIKVWDLVAALDPRAP 372
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 286 RHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKA 345
RH+L + +++ L D + SG D +I +WD+ N + L GH +
Sbjct: 120 RHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDK----NTLECKRILTGHTGS 175
Query: 346 ILCLINVAGLLMSGSADRTVRIW 368
+LCL ++++GS+D TVR+W
Sbjct: 176 VLCLQYDERVIITGSSDSTVRVW 198
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 344 KAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGV 403
K + CL ++SG D T++IW + + C +L GHT V L Q
Sbjct: 134 KGVYCLQYDDQKIVSGLRDNTIKIWDKNT---LECKRILTGHTGSVLCL-------QYDE 183
Query: 404 VSVFSGSLDGEIRAWQVS 421
+ +GS D +R W V+
Sbjct: 184 RVIITGSSDSTVRVWDVN 201
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 98/212 (46%), Gaps = 22/212 (10%)
Query: 211 HGD-AVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTG 269
H D +T L I S S D +LK+W A +CL ++ H V + + + +G
Sbjct: 117 HDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR-DNIIISG 175
Query: 270 SADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDS 329
S DR ++VW N + I TL H S V + L + V SG+ D ++ VWD E
Sbjct: 176 STDRTLKVW----NAETGECIHTLYGHTSTVRCMHLHEKRVV--SGSRDATLRVWDIETG 229
Query: 330 ANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPV 389
V L GH A+ C+ ++SG+ D V++W ++ CL L+GHT V
Sbjct: 230 QCLHV----LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE---TCLHTLQGHTNRV 282
Query: 390 KSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
SL Q + V SGSLD IR W V
Sbjct: 283 YSL-------QFDGIHVVSGSLDTSIRVWDVE 307
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 112/276 (40%), Gaps = 51/276 (18%)
Query: 145 VKSVTFCDGKIFTAHQDCKIRVWQXXXXXXXXXXXXXXXVNDRLLRFMLPNSYVTVRRHK 204
+ + FC +I + D ++VW V + LR +
Sbjct: 122 ITCLQFCGNRIVSGSDDNTLKVW--------------SAVTGKCLRTL------------ 155
Query: 205 KKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG 264
+ H V + + +I S S D++LK+W A C+ ++ H V + +
Sbjct: 156 ----VGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE-K 210
Query: 265 TVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVW 324
V +GS D +RVW + H L+ H +AV + DG + SGA D + VW
Sbjct: 211 RVVSGSRDATLRVWDIETGQCLHVLMG----HVAAVRCVQY--DGRRVVSGAYDFMVKVW 264
Query: 325 DREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEG 384
D E L+GH + L ++SGS D ++R+W + C+ L G
Sbjct: 265 DPETET----CLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG---NCIHTLTG 317
Query: 385 HTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
H +SLT+ E N +V SG+ D ++ W +
Sbjct: 318 H----QSLTSGMELKDNILV---SGNADSTVKIWDI 346
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 88/194 (45%), Gaps = 21/194 (10%)
Query: 211 HGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGS 270
H AV + + + S ++D +K+W CL +++ H + V ++ G V +GS
Sbjct: 238 HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD-GIHVVSGS 296
Query: 271 ADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSA 330
D IRVW + + I TL H+S + + L D+ +L SG D ++ +WD +
Sbjct: 297 LDTSIRVW----DVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQ 350
Query: 331 NHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVK 390
+ G + H A+ CL +++ S D TV++W + G F ++
Sbjct: 351 CLQTLQGPNK-HQSAVTCLQFNKNFVITSSDDGTVKLWDLKT-GEF------------IR 396
Query: 391 SLTAVTEEGQNGVV 404
+L + G GVV
Sbjct: 397 NLVTLESGGSGGVV 410
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 114/231 (49%), Gaps = 22/231 (9%)
Query: 199 TVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIW--RASDLRCLESIK--AHEDA 254
+++ +K+K+W + G++ + S D+ +K+ + D ++ + AH+ A
Sbjct: 9 SLKLYKEKIW--------SFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKA 60
Query: 255 VNAVAVSAGGTVYT-GSADRKIRVWAKPFNEKR---HALIATLEKHKSAVNALALSDDGT 310
+ +VA ++ GS D + +WAK + R L+A +E H++ V +A S+DG
Sbjct: 61 IRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY 120
Query: 311 VLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLI--NVAGLLMSGSADRTVRIW 368
L + + D+S+ +W+ ++S L+ H + + +I LL S S D TVRIW
Sbjct: 121 YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW 180
Query: 369 QRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ 419
+ D + C+AVL GH V S E GV + SGS D +R W+
Sbjct: 181 -KDYDDDWECVAVLNGHEGTVWSSDFDKTE---GVFRLCSGSDDSTVRVWK 227
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 105/235 (44%), Gaps = 26/235 (11%)
Query: 224 LIYSVSWDKSLKIW-------RASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKI 275
L+ + S+D ++ IW R ++ L I+ HE+ V VA S G + T S D+ +
Sbjct: 72 LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSV 131
Query: 276 RVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVV 335
+W + + + I+ L++H V + +L S + D ++ +W +D +
Sbjct: 132 WIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIW--KDYDDDWEC 189
Query: 336 TGALRGHGKAILC--LINVAGL--LMSGSADRTVRIWQRGSDG-----RFGCLAVL-EGH 385
L GH + G+ L SGS D TVR+W+ D + C A+L + H
Sbjct: 190 VAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVH 249
Query: 386 TKPVKSLT-----AVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSSPLNLQKW 435
+ V ++ + G +GV++V+ +DGE + + C +N+ KW
Sbjct: 250 KRQVYNVAWGFNGLIASVGADGVLAVYE-EVDGEWKVFAKRALCHGVYEINVVKW 303
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 134/297 (45%), Gaps = 43/297 (14%)
Query: 142 SGSVKSVTFC-DGK-IFTAHQDCKIRVWQXXXXXXXXXXXXXXXVNDRLLRFMLPNSYVT 199
S SV+ V F DG+ I +A D +++W VN R P+
Sbjct: 221 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFR---PDGQTI 277
Query: 200 VRRHKKK---LW----------IEHGDAVTGLAV--NNGLIYSVSWDKSLKIWRASDLRC 244
K LW H +V G+A + I S S DK++K+W + +
Sbjct: 278 ASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QH 336
Query: 245 LESIKAHEDAVNAVAVSAGG-TVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNAL 303
L+++ H +V VA S G T+ + S D+ +++W + L+ TL H S+V +
Sbjct: 337 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQTLTGHSSSVRGV 391
Query: 304 ALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI--LCLINVAGLLMSGSA 361
A S DG + S + D+++ +W+R ++ T L GH ++ + + S S
Sbjct: 392 AFSPDGQTIASASDDKTVKLWNRN---GQLLQT--LTGHSSSVWGVAFSPDDQTIASASD 446
Query: 362 DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAW 418
D+TV++W R +G+ L L GH+ V+ + A + +GQ ++ S S D ++ W
Sbjct: 447 DKTVKLWNR--NGQL--LQTLTGHSSSVRGV-AFSPDGQ----TIASASDDKTVKLW 494
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 108/213 (50%), Gaps = 25/213 (11%)
Query: 211 HGDAVTGLAV--NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG-TVY 267
H +V G+A + I S S DK++K+W + + L+++ H +V VA S G T+
Sbjct: 179 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIA 237
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
+ S D+ +++W + L+ TL H S+VN +A DG + S + D+++ +W+R
Sbjct: 238 SASDDKTVKLW-----NRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRN 292
Query: 328 DSANHMVVTGALRGHGKAI--LCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGH 385
++ T L GH ++ + + S S D+TV++W R +G+ L L GH
Sbjct: 293 ---GQLLQT--LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR--NGQH--LQTLTGH 343
Query: 386 TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAW 418
+ V + A + +GQ ++ S S D ++ W
Sbjct: 344 SSSVWGV-AFSPDGQ----TIASASDDKTVKLW 371
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 108/213 (50%), Gaps = 25/213 (11%)
Query: 211 HGDAVTGLAV--NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG-TVY 267
H +V G+A + I S S DK++K+W + + L+++ H +V VA S G T+
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIA 73
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
+ S D+ +++W + L+ TL H S+V +A S DG + S + D+++ +W+R
Sbjct: 74 SASDDKTVKLW-----NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 128
Query: 328 DSANHMVVTGALRGHGKAI--LCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGH 385
++ T L GH ++ + + S S D+TV++W R +G+ L L GH
Sbjct: 129 ---GQLLQT--LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR--NGQL--LQTLTGH 179
Query: 386 TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAW 418
+ V + A + +GQ ++ S S D ++ W
Sbjct: 180 SSSVWGV-AFSPDGQ----TIASASDDKTVKLW 207
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 107/213 (50%), Gaps = 25/213 (11%)
Query: 211 HGDAVTGLAV--NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG-TVY 267
H +V G+A + I S S DK++K+W + + L+++ H +V VA S T+
Sbjct: 384 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDDQTIA 442
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
+ S D+ +++W + L+ TL H S+V +A S DG + S + D+++ +W+R
Sbjct: 443 SASDDKTVKLW-----NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 497
Query: 328 DSANHMVVTGALRGHGKAI--LCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGH 385
++ T L GH ++ + + S S D+TV++W R +G+ L L GH
Sbjct: 498 ---GQLLQT--LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR--NGQL--LQTLTGH 548
Query: 386 TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAW 418
+ V + A + +GQ ++ S S D ++ W
Sbjct: 549 SSSVWGV-AFSPDGQ----TIASASSDKTVKLW 576
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 9/118 (7%)
Query: 211 HGDAVTGLAV--NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG-TVY 267
H +V G+A + I S S DK++K+W + + L+++ H +V VA S G T+
Sbjct: 466 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIA 524
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD 325
+ S D+ +++W + L+ TL H S+V +A S DG + S + D+++ +W+
Sbjct: 525 SASDDKTVKLW-----NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 16/128 (12%)
Query: 293 LEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI--LCLI 350
LE H S+V +A S DG + S + D+++ +W+R ++ T L GH ++ +
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN---GQLLQT--LTGHSSSVWGVAFS 66
Query: 351 NVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGS 410
+ S S D+TV++W R +G+ L L GH+ V+ + A + +GQ ++ S S
Sbjct: 67 PDGQTIASASDDKTVKLWNR--NGQL--LQTLTGHSSSVRGV-AFSPDGQ----TIASAS 117
Query: 411 LDGEIRAW 418
D ++ W
Sbjct: 118 DDKTVKLW 125
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 90/364 (24%), Positives = 148/364 (40%), Gaps = 65/364 (17%)
Query: 89 CINSVQLGHKLPIGCIAVHHNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGS---- 144
C+ G L GC + + S + D + N N SSS S
Sbjct: 69 CVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENL---NTSSSPSSDLY 125
Query: 145 VKSVTFC-DGKIF-TAHQDCKIRVWQXXXXXXXXXXXXXXXVNDRLLRFMLPNSYVTVRR 202
++SV F DGK T +D IR+W + +R + +L +
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWD---------------IENRKIVMIL-------QG 163
Query: 203 HKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA 262
H++ ++ ++ + L+ S S D++++IW +C ++ ED V VAVS
Sbjct: 164 HEQDIY-----SLDYFPSGDKLV-SGSGDRTVRIWDLRTGQCSLTLSI-EDGVTTVAVSP 216
Query: 263 GGTVY--TGSADRKIRVWAKPFNEKRHALIATLEK-------HKSAVNALALSDDGTVLF 313
G Y GS DR +RVW + + L+ L+ HK +V ++ + DG +
Sbjct: 217 GDGKYIAAGSLDRAVRVW----DSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 272
Query: 314 SGACDRSILVWDRED--------SANHMVVTGALRGHGKAILCLINVAG--LLMSGSADR 363
SG+ DRS+ +W+ ++ + N GH +L + ++SGS DR
Sbjct: 273 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 332
Query: 364 TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVF-SGSLDGEIRAWQVSV 422
V W + S L +L+GH V S+ +VF +GS D + R W+
Sbjct: 333 GVLFWDKKSGNP---LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389
Query: 423 SCPN 426
PN
Sbjct: 390 IAPN 393
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 101/229 (44%), Gaps = 33/229 (14%)
Query: 214 AVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADR 273
+T L + + + + DK ++++ + + + L + H+ V A+ + GG + +GS DR
Sbjct: 124 VITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDR 183
Query: 274 KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLF--SGACDRSILVW------- 324
+RVW + K+ E H S V L + + + + +G+ D ++ VW
Sbjct: 184 TVRVW----DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 239
Query: 325 --DREDSANHMVV----------TGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGS 372
D + ++ +V G LRGH ++ + +++SGS D T+ +W
Sbjct: 240 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDV-- 297
Query: 373 DGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
+ CL +L GHT + S E + S S+D IR W +
Sbjct: 298 -AQMKCLYILSGHTDRIYSTIYDHERKR-----CISASMDTTIRIWDLE 340
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 211 HGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAV-NAVAVSAGGTVYTG 269
H +V ++ + ++ S S+D +L +W + ++CL + H D + + + +
Sbjct: 269 HMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISA 328
Query: 270 SADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRED 328
S D IR+W E L+ TL+ H + V L LSD L S A D SI WD D
Sbjct: 329 SMDTTIRIWDLENGE----LMYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDAND 381
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 10/88 (11%)
Query: 338 ALRGHGKAIL-CLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT 396
LRGH +++ CL +++G+ D+ +R++ + +F L L GH V +L
Sbjct: 116 TLRGHMTSVITCLQFEDNYVITGADDKMIRVYD-SINKKF--LLQLSGHDGGVWAL---- 168
Query: 397 EEGQNGVVSVFSGSLDGEIRAWQVSVSC 424
+ G++ SGS D +R W + C
Sbjct: 169 KYAHGGIL--VSGSTDRTVRVWDIKKGC 194
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 100/229 (43%), Gaps = 33/229 (14%)
Query: 214 AVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADR 273
+T L + + + + DK ++++ + + + L + H+ V A+ + GG + +GS DR
Sbjct: 124 VITCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDR 183
Query: 274 KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLF--SGACDRSILVW------- 324
+RVW + K+ E H S V L + + + + +G+ D ++ VW
Sbjct: 184 TVRVW----DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 239
Query: 325 --DREDSANHMVV----------TGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGS 372
D + ++ +V G LRGH ++ + +++SGS D T+ +W
Sbjct: 240 VPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDV-- 297
Query: 373 DGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
+ CL +L GHT + S E + S S D IR W +
Sbjct: 298 -AQXKCLYILSGHTDRIYSTIYDHERKR-----CISASXDTTIRIWDLE 340
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Query: 211 HGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAV-NAVAVSAGGTVYTG 269
H +V ++ + ++ S S+D +L +W + +CL + H D + + + +
Sbjct: 269 HXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISA 328
Query: 270 SADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRED 328
S D IR+W E L TL+ H + V L LSD L S A D SI WD D
Sbjct: 329 SXDTTIRIWDLENGE----LXYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDAND 381
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 10/88 (11%)
Query: 338 ALRGHGKAIL-CLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT 396
LRGH +++ CL +++G+ D+ +R++ + +F L L GH V +L
Sbjct: 116 TLRGHXTSVITCLQFEDNYVITGADDKXIRVYD-SINKKF--LLQLSGHDGGVWAL---- 168
Query: 397 EEGQNGVVSVFSGSLDGEIRAWQVSVSC 424
+ G++ SGS D +R W + C
Sbjct: 169 KYAHGGIL--VSGSTDRTVRVWDIKKGC 194
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 21/179 (11%)
Query: 247 SIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALAL 305
++ H AV++V S G + SAD+ I++W ++ K T+ HK ++ +A
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWG-AYDGKFEK---TISGHKLGISDVAW 76
Query: 306 SDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILC--LINVAGLLMSGSADR 363
S D +L S + D+++ +WD S+ + T L+GH + C + L++SGS D
Sbjct: 77 SSDSNLLVSASDDKTLKIWDV--SSGKCLKT--LKGHSNYVFCCNFNPQSNLIVSGSFDE 132
Query: 364 TVRIWQRGSDGRFG-CLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
+VRIW D + G CL L H+ PV ++ ++G + + S S DG R W +
Sbjct: 133 SVRIW----DVKTGKCLKTLPAHSDPVSAV----HFNRDGSL-IVSSSYDGLCRIWDTA 182
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 29/210 (13%)
Query: 221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA-GGTVYTGSADRKIRVWA 279
++ L+ S S DK+LKIW S +CL+++K H + V + + +GS D +R+W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 280 KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE---------DSA 330
+ K + TL H V+A+ + DG+++ S + D +WD D
Sbjct: 138 ---DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 194
Query: 331 NHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVK 390
N V +GK IL + + D T+++W S G+ CL GH
Sbjct: 195 NPPVSFVKFSPNGKYIL----------AATLDNTLKLWDY-SKGK--CLKTYTGHKNEKY 241
Query: 391 SLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
+ A G + SGS D + W +
Sbjct: 242 CIFA--NFSVTGGKWIVSGSEDNLVYIWNL 269
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 13/199 (6%)
Query: 224 LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPF 282
LI S S+D+S++IW +CL+++ AH D V+AV + G+ + + S D R+W
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH 342
+ LI + V+ + S +G + + D ++ +WD TG +
Sbjct: 184 GQCLKTLI---DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH-KNE 239
Query: 343 GKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQ 400
I +V G ++SGS D V IW + + L+GHT V S E
Sbjct: 240 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQKLQGHTDVVISTACHPTE-- 294
Query: 401 NGVVSVFSGSLDGEIRAWQ 419
+++ + D I+ W+
Sbjct: 295 -NIIASAALENDKTIKLWK 312
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 26/198 (13%)
Query: 231 DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY-TGSADRKIRVWAKPFNEKRHAL 289
DK +KIW A D + ++I H+ ++ VA S+ + + S D+ +++W +
Sbjct: 47 DKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW----DVSSGKC 102
Query: 290 IATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTG----ALRGHGKA 345
+ TL+ H + V + ++ SG+ D S+ +WD V TG L H
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD--------VKTGKCLKTLPAHSDP 154
Query: 346 ILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGV 403
+ + N G L++S S D RIW S G+ CL L P S + G+
Sbjct: 155 VSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKTLIDDDNPPVSFVKFSPNGK--- 208
Query: 404 VSVFSGSLDGEIRAWQVS 421
+ + +LD ++ W S
Sbjct: 209 -YILAATLDNTLKLWDYS 225
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 29/210 (13%)
Query: 221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA-GGTVYTGSADRKIRVWA 279
++ L+ S S DK+LKIW S +CL+++K H + V + + +GS D +R+W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 280 KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE---------DSA 330
+ K + TL H V+A+ + DG+++ S + D +WD D
Sbjct: 138 ---DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 194
Query: 331 NHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVK 390
N V +GK IL + + D T+++W S G+ CL GH
Sbjct: 195 NPPVSFVKFSPNGKYIL----------AATLDNTLKLWDY-SKGK--CLKTYTGHKNEKY 241
Query: 391 SLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
+ A G + SGS D + W +
Sbjct: 242 CIFA--NFSVTGGKWIVSGSEDNMVYIWNL 269
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 13/199 (6%)
Query: 224 LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPF 282
LI S S+D+S++IW CL+++ AH D V+AV + G+ + + S D R+W
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH 342
+ LI + V+ + S +G + + D ++ +WD TG +
Sbjct: 184 GQCLKTLI---DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH-KNE 239
Query: 343 GKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQ 400
I +V G ++SGS D V IW + + L+GHT V S E
Sbjct: 240 KYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTK---EIVQKLQGHTDVVISTACHPTE-- 294
Query: 401 NGVVSVFSGSLDGEIRAWQ 419
+++ + D I+ W+
Sbjct: 295 -NIIASAALENDKTIKLWK 312
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 20/216 (9%)
Query: 211 HGDAVTG--LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
H AV+ + N + S S DK +KIW A D + ++I H+ ++ VA S+ +
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
+ S D+ +++W + + TL+ H + V + ++ SG+ D S+ +WD +
Sbjct: 85 SASDDKTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 328 DSANHMVVTGALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGH 385
+ L H + + N G L++S S D RIW S G+ CL L
Sbjct: 141 TG----MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKTLIDD 193
Query: 386 TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
P S + G+ + + +LD ++ W S
Sbjct: 194 DNPPVSFVKFSPNGK----YILAATLDNTLKLWDYS 225
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 14/177 (7%)
Query: 248 IKAHEDAVNAVAV-SAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALS 306
+AH D + ++AV V +GS D +++W E AL T E H+ V +A +
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW---ENNWALEQTFEGHEHFVMCVAFN 149
Query: 307 -DDGTVLFSGACDRSILVWDR-EDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRT 364
D + SG DR++ VW + + N + TG RG + +++ S D T
Sbjct: 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT 209
Query: 365 VRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
++IW + C+A LEGH V + + SGS DG ++ W S
Sbjct: 210 IKIWDYQTK---SCVATLEGHMSNVSFAVF-----HPTLPIIISGSEDGTLKIWNSS 258
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 81/205 (39%), Gaps = 26/205 (12%)
Query: 205 KKLWIEHGDAVTGLAVN--NGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNA-VAVS 261
KK + D V G+ + + + + +++W + SI+ E V A ++
Sbjct: 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 262 AGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSI 321
+ GS D +IRV FN + E H + ++A+ + SG+ D ++
Sbjct: 66 RKNWIIVGSDDFRIRV----FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV 121
Query: 322 LVWDREDSANHMVVTGALRGHGKAILCLI---NVAGLLMSGSADRTVRIWQRGSDGRFGC 378
+W+ E N+ + GH ++C+ SG DRTV++W
Sbjct: 122 KLWNWE---NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL-------- 170
Query: 379 LAVLEGHTKPVKSLTAVTEEGQNGV 403
G + P +LT E G N V
Sbjct: 171 -----GQSTPNFTLTTGQERGVNYV 190
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 356 LMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEI 415
++SGS D TV++W + + EGH V + ++ + SG LD +
Sbjct: 112 VLSGSDDLTVKLWNW--ENNWALEQTFEGHEHFVMCVAFNPKDPS----TFASGCLDRTV 165
Query: 416 RAWQVSVSCPN 426
+ W + S PN
Sbjct: 166 KVWSLGQSTPN 176
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 14/177 (7%)
Query: 248 IKAHEDAVNAVAV-SAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALS 306
+AH D + ++AV V +GS D +++W E AL T E H+ V +A +
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW---ENNWALEQTFEGHEHFVMCVAFN 149
Query: 307 -DDGTVLFSGACDRSILVWDR-EDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRT 364
D + SG DR++ VW + + N + TG RG + +++ S D T
Sbjct: 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT 209
Query: 365 VRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
++IW + C+A LEGH V + + SGS DG ++ W S
Sbjct: 210 IKIWDYQTK---SCVATLEGHMSNVSFAVF-----HPTLPIIISGSEDGTLKIWNSS 258
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 81/205 (39%), Gaps = 26/205 (12%)
Query: 205 KKLWIEHGDAVTGLAVN--NGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNA-VAVS 261
KK + D V G+ + + + + +++W + SI+ E V A ++
Sbjct: 6 KKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 262 AGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSI 321
+ GS D +IRV FN + E H + ++A+ + SG+ D ++
Sbjct: 66 RKNWIIVGSDDFRIRV----FNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTV 121
Query: 322 LVWDREDSANHMVVTGALRGHGKAILCLI---NVAGLLMSGSADRTVRIWQRGSDGRFGC 378
+W+ E N+ + GH ++C+ SG DRTV++W
Sbjct: 122 KLWNWE---NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL-------- 170
Query: 379 LAVLEGHTKPVKSLTAVTEEGQNGV 403
G + P +LT E G N V
Sbjct: 171 -----GQSTPNFTLTTGQERGVNYV 190
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 356 LMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEI 415
++SGS D TV++W + + EGH V + ++ + SG LD +
Sbjct: 112 VLSGSDDLTVKLWNW--ENNWALEQTFEGHEHFVMCVAFNPKDPS----TFASGCLDRTV 165
Query: 416 RAWQVSVSCPN 426
+ W + S PN
Sbjct: 166 KVWSLGQSTPN 176
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 29/210 (13%)
Query: 221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA-GGTVYTGSADRKIRVWA 279
++ L+ S S DK+LKIW S +CL+++K H + V + + +GS D +R+W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 280 KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE---------DSA 330
+ K + TL H V+A+ + DG+++ S + D +WD D
Sbjct: 141 ---DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 197
Query: 331 NHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVK 390
N V +GK IL + + D T+++W S G+ CL GH
Sbjct: 198 NPPVSFVKFSPNGKYIL----------AATLDNTLKLWDY-SKGK--CLKTYTGHKNEKY 244
Query: 391 SLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
+ A G + SGS D + W +
Sbjct: 245 CIFA--NFSVTGGKWIVSGSEDNLVYIWNL 272
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 13/199 (6%)
Query: 224 LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPF 282
LI S S+D+S++IW +CL+++ AH D V+AV + G+ + + S D R+W
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH 342
+ LI + V+ + S +G + + D ++ +WD TG +
Sbjct: 187 GQCLKTLI---DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH-KNE 242
Query: 343 GKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQ 400
I +V G ++SGS D V IW + + L+GHT V S E
Sbjct: 243 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQKLQGHTDVVISTACHPTE-- 297
Query: 401 NGVVSVFSGSLDGEIRAWQ 419
+++ + D I+ W+
Sbjct: 298 -NIIASAALENDKTIKLWK 315
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 211 HGDAVTG--LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
H AV+ + N + S S DK +KIW A D + ++I H+ ++ VA S+ +
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
+ S D+ +++W + + TL+ H + V + ++ SG+ D S+ +WD
Sbjct: 88 SASDDKTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-- 141
Query: 328 DSANHMVVTG----ALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAV 381
V TG L H + + N G L++S S D RIW S G+ CL
Sbjct: 142 ------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKT 192
Query: 382 LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
L P S + G+ + + +LD ++ W S
Sbjct: 193 LIDDDNPPVSFVKFSPNGK----YILAATLDNTLKLWDYS 228
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 29/210 (13%)
Query: 221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA-GGTVYTGSADRKIRVWA 279
++ L+ S S DK+LKIW S +CL+++K H + V + + +GS D +R+W
Sbjct: 72 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 130
Query: 280 KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE---------DSA 330
+ K + TL H V+A+ + DG+++ S + D +WD D
Sbjct: 131 ---DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 187
Query: 331 NHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVK 390
N V +GK IL + + D T+++W S G+ CL GH
Sbjct: 188 NPPVSFVKFSPNGKYIL----------AATLDNTLKLWDY-SKGK--CLKTYTGHKNEKY 234
Query: 391 SLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
+ A G + SGS D + W +
Sbjct: 235 CIFA--NFSVTGGKWIVSGSEDNLVYIWNL 262
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 13/199 (6%)
Query: 224 LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPF 282
LI S S+D+S++IW +CL+++ AH D V+AV + G+ + + S D R+W
Sbjct: 117 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 176
Query: 283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH 342
+ LI + V+ + S +G + + D ++ +WD TG +
Sbjct: 177 GQCLKTLI---DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH-KNE 232
Query: 343 GKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQ 400
I +V G ++SGS D V IW + + L+GHT V S E
Sbjct: 233 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQKLQGHTDVVISTACHPTE-- 287
Query: 401 NGVVSVFSGSLDGEIRAWQ 419
+++ + D I+ W+
Sbjct: 288 -NIIASAALENDKTIKLWK 305
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 211 HGDAVTG--LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
H AV+ + N + S S DK +KIW A D + ++I H+ ++ VA S+ +
Sbjct: 18 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 77
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
+ S D+ +++W + + TL+ H + V + ++ SG+ D S+ +WD
Sbjct: 78 SASDDKTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-- 131
Query: 328 DSANHMVVTG----ALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAV 381
V TG L H + + N G L++S S D RIW S G+ CL
Sbjct: 132 ------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKT 182
Query: 382 LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
L P S + G+ + + +LD ++ W S
Sbjct: 183 LIDDDNPPVSFVKFSPNGK----YILAATLDNTLKLWDYS 218
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 29/210 (13%)
Query: 221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA-GGTVYTGSADRKIRVWA 279
++ L+ S S DK+LKIW S +CL+++K H + V + + +GS D +R+W
Sbjct: 93 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 151
Query: 280 KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE---------DSA 330
+ K + TL H V+A+ + DG+++ S + D +WD D
Sbjct: 152 ---DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 208
Query: 331 NHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVK 390
N V +GK IL + + D T+++W S G+ CL GH
Sbjct: 209 NPPVSFVKFSPNGKYIL----------AATLDNTLKLWDY-SKGK--CLKTYTGHKNEKY 255
Query: 391 SLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
+ A G + SGS D + W +
Sbjct: 256 CIFA--NFSVTGGKWIVSGSEDNLVYIWNL 283
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 13/199 (6%)
Query: 224 LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPF 282
LI S S+D+S++IW +CL+++ AH D V+AV + G+ + + S D R+W
Sbjct: 138 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 197
Query: 283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH 342
+ LI + V+ + S +G + + D ++ +WD TG +
Sbjct: 198 GQCLKTLI---DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH-KNE 253
Query: 343 GKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQ 400
I +V G ++SGS D V IW + + L+GHT V S E
Sbjct: 254 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQKLQGHTDVVISTACHPTE-- 308
Query: 401 NGVVSVFSGSLDGEIRAWQ 419
+++ + D I+ W+
Sbjct: 309 -NIIASAALENDKTIKLWK 326
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 211 HGDAVTG--LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
H AV+ + N + S S DK +KIW A D + ++I H+ ++ VA S+ +
Sbjct: 39 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 98
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
+ S D+ +++W + + TL+ H + V + ++ SG+ D S+ +WD
Sbjct: 99 SASDDKTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-- 152
Query: 328 DSANHMVVTG----ALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAV 381
V TG L H + + N G L++S S D RIW S G+ CL
Sbjct: 153 ------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKT 203
Query: 382 LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
L P S + G+ + + +LD ++ W S
Sbjct: 204 LIDDDNPPVSFVKFSPNGK----YILAATLDNTLKLWDYS 239
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 29/210 (13%)
Query: 221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA-GGTVYTGSADRKIRVWA 279
++ L+ S S DK+LKIW S +CL+++K H + V + + +GS D +R+W
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 134
Query: 280 KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE---------DSA 330
+ K + TL H V+A+ + DG+++ S + D +WD D
Sbjct: 135 ---DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 191
Query: 331 NHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVK 390
N V +GK IL + + D T+++W S G+ CL GH
Sbjct: 192 NPPVSFVKFSPNGKYIL----------AATLDNTLKLWDY-SKGK--CLKTYTGHKNEKY 238
Query: 391 SLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
+ A G + SGS D + W +
Sbjct: 239 CIFA--NFSVTGGKWIVSGSEDNLVYIWNL 266
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 13/199 (6%)
Query: 224 LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPF 282
LI S S+D+S++IW +CL+++ AH D V+AV + G+ + + S D R+W
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH 342
+ LI + V+ + S +G + + D ++ +WD TG +
Sbjct: 181 GQCLKTLI---DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH-KNE 236
Query: 343 GKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQ 400
I +V G ++SGS D V IW + + L+GHT V S E
Sbjct: 237 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQKLQGHTDVVISTACHPTE-- 291
Query: 401 NGVVSVFSGSLDGEIRAWQ 419
+++ + D I+ W+
Sbjct: 292 -NIIASAALENDKTIKLWK 309
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 211 HGDAVTG--LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
H AV+ + N + S S DK +KIW A D + ++I H+ ++ VA S+ +
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 81
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
+ S D+ +++W + + TL+ H + V + ++ SG+ D S+ +WD
Sbjct: 82 SASDDKTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-- 135
Query: 328 DSANHMVVTG----ALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAV 381
V TG L H + + N G L++S S D RIW S G+ CL
Sbjct: 136 ------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKT 186
Query: 382 LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
L P S + G+ + + +LD ++ W S
Sbjct: 187 LIDDDNPPVSFVKFSPNGK----YILAATLDNTLKLWDYS 222
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 29/210 (13%)
Query: 221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA-GGTVYTGSADRKIRVWA 279
++ L+ S S DK+LKIW S +CL+++K H + V + + +GS D +R+W
Sbjct: 77 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 135
Query: 280 KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE---------DSA 330
+ K + TL H V+A+ + DG+++ S + D +WD D
Sbjct: 136 ---DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 192
Query: 331 NHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVK 390
N V +GK IL + + D T+++W S G+ CL GH
Sbjct: 193 NPPVSFVKFSPNGKYIL----------AATLDNTLKLWDY-SKGK--CLKTYTGHKNEKY 239
Query: 391 SLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
+ A G + SGS D + W +
Sbjct: 240 CIFA--NFSVTGGKWIVSGSEDNLVYIWNL 267
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 13/199 (6%)
Query: 224 LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPF 282
LI S S+D+S++IW +CL+++ AH D V+AV + G+ + + S D R+W
Sbjct: 122 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 181
Query: 283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH 342
+ LI + V+ + S +G + + D ++ +WD TG +
Sbjct: 182 GQCLKTLI---DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH-KNE 237
Query: 343 GKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQ 400
I +V G ++SGS D V IW + + L+GHT V S E
Sbjct: 238 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQKLQGHTDVVISTACHPTE-- 292
Query: 401 NGVVSVFSGSLDGEIRAWQ 419
+++ + D I+ W+
Sbjct: 293 -NIIASAALENDKTIKLWK 310
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 211 HGDAVTG--LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
H AV+ + N + S S DK +KIW A D + ++I H+ ++ VA S+ +
Sbjct: 23 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 82
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
+ S D+ +++W + + TL+ H + V + ++ SG+ D S+ +WD
Sbjct: 83 SASDDKTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-- 136
Query: 328 DSANHMVVTG----ALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAV 381
V TG L H + + N G L++S S D RIW S G+ CL
Sbjct: 137 ------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKT 187
Query: 382 LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
L P S + G+ + + +LD ++ W S
Sbjct: 188 LIDDDNPPVSFVKFSPNGK----YILAATLDNTLKLWDYS 223
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 29/210 (13%)
Query: 221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA-GGTVYTGSADRKIRVWA 279
++ L+ S S DK+LKIW S +CL+++K H + V + + +GS D +R+W
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 134
Query: 280 KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE---------DSA 330
+ K + TL H V+A+ + DG+++ S + D +WD D
Sbjct: 135 ---DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 191
Query: 331 NHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVK 390
N V +GK IL + + D T+++W S G+ CL GH
Sbjct: 192 NPPVSFVKFSPNGKYIL----------AATLDNTLKLWDY-SKGK--CLKTYTGHKNEKY 238
Query: 391 SLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
+ A G + SGS D + W +
Sbjct: 239 CIFA--NFSVTGGKWIVSGSEDNLVYIWNL 266
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 13/199 (6%)
Query: 224 LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPF 282
LI S S+D+S++IW +CL+++ AH D V+AV + G+ + + S D R+W
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 180
Query: 283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH 342
+ LI + V+ + S +G + + D ++ +WD TG +
Sbjct: 181 GQCLKTLI---DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH-KNE 236
Query: 343 GKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQ 400
I +V G ++SGS D V IW + + L+GHT V S E
Sbjct: 237 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQKLQGHTDVVISTACHPTE-- 291
Query: 401 NGVVSVFSGSLDGEIRAWQ 419
+++ + D I+ W+
Sbjct: 292 -NIIASAALENDKTIKLWK 309
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 211 HGDAVTG--LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
H AV+ + N + S S DK +KIW A D + ++I H+ ++ VA S+ +
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 81
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
+ S D+ +++W + + TL+ H + V + ++ SG+ D S+ +WD
Sbjct: 82 SASDDKTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-- 135
Query: 328 DSANHMVVTG----ALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAV 381
V TG L H + + N G L++S S D RIW S G+ CL
Sbjct: 136 ------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKT 186
Query: 382 LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
L P S + G+ + + +LD ++ W S
Sbjct: 187 LIDDDNPPVSFVKFSPNGK----YILAATLDNTLKLWDYS 222
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 29/210 (13%)
Query: 221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA-GGTVYTGSADRKIRVWA 279
++ L+ S S DK+LKIW S +CL+++K H + V + + +GS D +R+W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 280 KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE---------DSA 330
+ K + TL H V+A+ + DG+++ S + D +WD D
Sbjct: 141 ---DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 197
Query: 331 NHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVK 390
N V +GK IL + + D T+++W S G+ CL GH
Sbjct: 198 NPPVSFVKFSPNGKYIL----------AATLDNTLKLWDY-SKGK--CLKTYTGHKNEKY 244
Query: 391 SLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
+ A G + SGS D + W +
Sbjct: 245 CIFA--NFSVTGGKWIVSGSEDNLVYIWNL 272
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 13/199 (6%)
Query: 224 LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPF 282
LI S S+D+S++IW +CL+++ AH D V+AV + G+ + + S D R+W
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH 342
+ LI + V+ + S +G + + D ++ +WD TG +
Sbjct: 187 GQCLKTLI---DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH-KNE 242
Query: 343 GKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQ 400
I +V G ++SGS D V IW + + L+GHT V S E
Sbjct: 243 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQKLQGHTDVVISTACHPTE-- 297
Query: 401 NGVVSVFSGSLDGEIRAWQ 419
+++ + D I+ W+
Sbjct: 298 -NIIASAALENDKTIKLWK 315
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 211 HGDAVTG--LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
H AV+ + N + S S DK +KIW A D + ++I H+ ++ VA S+ +
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
+ S D+ +++W + + TL+ H + V + ++ SG+ D S+ +WD
Sbjct: 88 SASDDKTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-- 141
Query: 328 DSANHMVVTG----ALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAV 381
V TG L H + + N G L++S S D RIW S G+ CL
Sbjct: 142 ------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKT 192
Query: 382 LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
L P S + G+ + + +LD ++ W S
Sbjct: 193 LIDDDNPPVSFVKFSPNGK----YILAATLDNTLKLWDYS 228
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 29/210 (13%)
Query: 221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA-GGTVYTGSADRKIRVWA 279
++ L+ S S DK+LKIW S +CL+++K H + V + + +GS D +R+W
Sbjct: 75 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 133
Query: 280 KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE---------DSA 330
+ K + TL H V+A+ + DG+++ S + D +WD D
Sbjct: 134 ---DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 190
Query: 331 NHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVK 390
N V +GK IL + + D T+++W S G+ CL GH
Sbjct: 191 NPPVSFVKFSPNGKYIL----------AATLDNTLKLWDY-SKGK--CLKTYTGHKNEKY 237
Query: 391 SLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
+ A G + SGS D + W +
Sbjct: 238 CIFA--NFSVTGGKWIVSGSEDNLVYIWNL 265
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 13/199 (6%)
Query: 224 LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPF 282
LI S S+D+S++IW +CL+++ AH D V+AV + G+ + + S D R+W
Sbjct: 120 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 179
Query: 283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH 342
+ LI + V+ + S +G + + D ++ +WD TG +
Sbjct: 180 GQCLKTLI---DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH-KNE 235
Query: 343 GKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQ 400
I +V G ++SGS D V IW + + L+GHT V S E
Sbjct: 236 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQKLQGHTDVVISTACHPTE-- 290
Query: 401 NGVVSVFSGSLDGEIRAWQ 419
+++ + D I+ W+
Sbjct: 291 -NIIASAALENDKTIKLWK 308
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 211 HGDAVTG--LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
H AV+ + N + S S DK +KIW A D + ++I H+ ++ VA S+ +
Sbjct: 21 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 80
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
+ S D+ +++W + + TL+ H + V + ++ SG+ D S+ +WD
Sbjct: 81 SASDDKTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-- 134
Query: 328 DSANHMVVTG----ALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAV 381
V TG L H + + N G L++S S D RIW S G+ CL
Sbjct: 135 ------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKT 185
Query: 382 LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
L P S + G+ + + +LD ++ W S
Sbjct: 186 LIDDDNPPVSFVKFSPNGK----YILAATLDNTLKLWDYS 221
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 29/210 (13%)
Query: 221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA-GGTVYTGSADRKIRVWA 279
++ L+ S S DK+LKIW S +CL+++K H + V + + +GS D +R+W
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 156
Query: 280 KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE---------DSA 330
+ K + TL H V+A+ + DG+++ S + D +WD D
Sbjct: 157 ---DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 213
Query: 331 NHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVK 390
N V +GK IL + + D T+++W S G+ CL GH
Sbjct: 214 NPPVSFVKFSPNGKYIL----------AATLDNTLKLWDY-SKGK--CLKTYTGHKNEKY 260
Query: 391 SLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
+ A G + SGS D + W +
Sbjct: 261 CIFA--NFSVTGGKWIVSGSEDNLVYIWNL 288
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 13/199 (6%)
Query: 224 LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPF 282
LI S S+D+S++IW +CL+++ AH D V+AV + G+ + + S D R+W
Sbjct: 143 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 202
Query: 283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH 342
+ LI + V+ + S +G + + D ++ +WD TG +
Sbjct: 203 GQCLKTLI---DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH-KNE 258
Query: 343 GKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQ 400
I +V G ++SGS D V IW + + L+GHT V S E
Sbjct: 259 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQKLQGHTDVVISTACHPTE-- 313
Query: 401 NGVVSVFSGSLDGEIRAWQ 419
+++ + D I+ W+
Sbjct: 314 -NIIASAALENDKTIKLWK 331
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 211 HGDAVTG--LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
H AV+ + N + S S DK +KIW A D + ++I H+ ++ VA S+ +
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
+ S D+ +++W + + TL+ H + V + ++ SG+ D S+ +WD
Sbjct: 104 SASDDKTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-- 157
Query: 328 DSANHMVVTG----ALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAV 381
V TG L H + + N G L++S S D RIW S G+ CL
Sbjct: 158 ------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKT 208
Query: 382 LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
L P S + G+ + + +LD ++ W S
Sbjct: 209 LIDDDNPPVSFVKFSPNGK----YILAATLDNTLKLWDYS 244
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 29/210 (13%)
Query: 221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA-GGTVYTGSADRKIRVWA 279
++ L+ S S DK+LKIW S +CL+++K H + V + + +GS D +R+W
Sbjct: 81 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 139
Query: 280 KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE---------DSA 330
+ K + TL H V+A+ + DG+++ S + D +WD D
Sbjct: 140 ---DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 196
Query: 331 NHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVK 390
N V +GK IL + + D T+++W S G+ CL GH
Sbjct: 197 NPPVSFVKFSPNGKYIL----------AATLDNTLKLWDY-SKGK--CLKTYTGHKNEKY 243
Query: 391 SLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
+ A G + SGS D + W +
Sbjct: 244 CIFA--NFSVTGGKWIVSGSEDNLVYIWNL 271
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 13/199 (6%)
Query: 224 LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPF 282
LI S S+D+S++IW +CL+++ AH D V+AV + G+ + + S D R+W
Sbjct: 126 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 185
Query: 283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH 342
+ LI + V+ + S +G + + D ++ +WD TG +
Sbjct: 186 GQCLKTLI---DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH-KNE 241
Query: 343 GKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQ 400
I +V G ++SGS D V IW + + L+GHT V S E
Sbjct: 242 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQKLQGHTDVVISTACHPTE-- 296
Query: 401 NGVVSVFSGSLDGEIRAWQ 419
+++ + D I+ W+
Sbjct: 297 -NIIASAALENDKTIKLWK 314
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 211 HGDAVTG--LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
H AV+ + N + S S DK +KIW A D + ++I H+ ++ VA S+ +
Sbjct: 27 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 86
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
+ S D+ +++W + + TL+ H + V + ++ SG+ D S+ +WD
Sbjct: 87 SASDDKTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-- 140
Query: 328 DSANHMVVTG----ALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAV 381
V TG L H + + N G L++S S D RIW S G+ CL
Sbjct: 141 ------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKT 191
Query: 382 LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
L P S + G+ + + +LD ++ W S
Sbjct: 192 LIDDDNPPVSFVKFSPNGK----YILAATLDNTLKLWDYS 227
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 29/210 (13%)
Query: 221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA-GGTVYTGSADRKIRVWA 279
++ L+ S S DK+LKIW S +CL+++K H + V + + +GS D +R+W
Sbjct: 82 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 140
Query: 280 KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE---------DSA 330
+ K + TL H V+A+ + DG+++ S + D +WD D
Sbjct: 141 ---DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 197
Query: 331 NHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVK 390
N V +GK IL + + D T+++W S G+ CL GH
Sbjct: 198 NPPVSFVKFSPNGKYIL----------AATLDNTLKLWDY-SKGK--CLKTYTGHKNEKY 244
Query: 391 SLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
+ A G + SGS D + W +
Sbjct: 245 CIFA--NFSVTGGKWIVSGSEDNLVYIWNL 272
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 13/199 (6%)
Query: 224 LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPF 282
LI S S+D+S++IW +CL+++ AH D V+AV + G+ + + S D R+W
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 186
Query: 283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH 342
+ LI + V+ + S +G + + D ++ +WD TG +
Sbjct: 187 GQCLKTLI---DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH-KNE 242
Query: 343 GKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQ 400
I +V G ++SGS D V IW + + L+GHT V S E
Sbjct: 243 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQKLQGHTDVVISTACHPTE-- 297
Query: 401 NGVVSVFSGSLDGEIRAWQ 419
+++ + D I+ W+
Sbjct: 298 -NIIASAALENDKTIKLWK 315
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 211 HGDAVTG--LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
H AV+ + N + S S DK +KIW A D + ++I H+ ++ VA S+ +
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
+ S D+ +++W + + TL+ H + V + ++ SG+ D S+ +WD
Sbjct: 88 SASDDKTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-- 141
Query: 328 DSANHMVVTG----ALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAV 381
V TG L H + + N G L++S S D RIW S G+ CL
Sbjct: 142 ------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKT 192
Query: 382 LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
L P S + G+ + + +LD ++ W S
Sbjct: 193 LIDDDNPPVSFVKFSPNGK----YILAATLDNTLKLWDYS 228
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 29/210 (13%)
Query: 221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA-GGTVYTGSADRKIRVWA 279
++ L+ S S DK+LKIW S +CL+++K H + V + + +GS D +R+W
Sbjct: 100 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 158
Query: 280 KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE---------DSA 330
+ K + TL H V+A+ + DG+++ S + D +WD D
Sbjct: 159 ---DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 215
Query: 331 NHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVK 390
N V +GK IL + + D T+++W S G+ CL GH
Sbjct: 216 NPPVSFVKFSPNGKYIL----------AATLDNTLKLWDY-SKGK--CLKTYTGHKNEKY 262
Query: 391 SLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
+ A G + SGS D + W +
Sbjct: 263 CIFA--NFSVTGGKWIVSGSEDNLVYIWNL 290
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 88/199 (44%), Gaps = 13/199 (6%)
Query: 224 LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPF 282
LI S S+D+S++IW +CL+++ AH D V+AV + G+ + + S D R+W
Sbjct: 145 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 204
Query: 283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH 342
+ LI + V+ + S +G + + D ++ +WD TG +
Sbjct: 205 GQCLKTLI---DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH-KNE 260
Query: 343 GKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQ 400
I +V G ++SGS D V IW + + L+GHT V S E
Sbjct: 261 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQKLQGHTDVVISTACHPTE-- 315
Query: 401 NGVVSVFSGSLDGEIRAWQ 419
+++ + D I+ W+
Sbjct: 316 -NIIASAALENDKTIKLWK 333
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 211 HGDAVTG--LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
H AV+ + N + S S DK +KIW A D + ++I H+ ++ VA S+ +
Sbjct: 46 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 105
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
+ S D+ +++W + + TL+ H + V + ++ SG+ D S+ +WD
Sbjct: 106 SASDDKTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-- 159
Query: 328 DSANHMVVTG----ALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAV 381
V TG L H + + N G L++S S D RIW S G+ CL
Sbjct: 160 ------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKT 210
Query: 382 LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
L P S + G+ + + +LD ++ W S
Sbjct: 211 LIDDDNPPVSFVKFSPNGK----YILAATLDNTLKLWDYS 246
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 29/210 (13%)
Query: 221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA-GGTVYTGSADRKIRVWA 279
++ L+ S S DK+LKIW S +CL+++K H + V + + +GS D +R+W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 280 KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE---------DSA 330
+ K + TL H V+A+ + DG+++ S + D +WD D
Sbjct: 138 ---DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 194
Query: 331 NHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVK 390
N V +GK IL + + D T+++W S G+ CL GH
Sbjct: 195 NPPVSFVKFSPNGKYIL----------AATLDNTLKLWDY-SKGK--CLKTYTGHKNEKY 241
Query: 391 SLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
+ A G + SGS D + W +
Sbjct: 242 CIFA--NFSVTGGKWIVSGSEDNLVYIWNL 269
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 10/171 (5%)
Query: 224 LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPF 282
LI S S+D+S++IW +CL+++ AH D V+AV + G+ + + S D R+W
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH 342
+ LI + V+ + S +G + + D ++ +WD TG +
Sbjct: 184 GQCLKTLI---DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH-KNE 239
Query: 343 GKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKS 391
I +V G ++SGS D V IW + + L+GHT V S
Sbjct: 240 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQKLQGHTDVVIS 287
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 211 HGDAVTG--LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
H AV+ + N + S S DK +KIW A D + ++I H+ ++ VA S+ +
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
+ S D+ +++W + + TL+ H + V + ++ SG+ D S+ +WD
Sbjct: 85 SASDDKTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-- 138
Query: 328 DSANHMVVTG----ALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAV 381
V TG L H + + N G L++S S D RIW S G+ CL
Sbjct: 139 ------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKT 189
Query: 382 LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
L P S + G+ + + +LD ++ W S
Sbjct: 190 LIDDDNPPVSFVKFSPNGK----YILAATLDNTLKLWDYS 225
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 90/210 (42%), Gaps = 29/210 (13%)
Query: 221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA-GGTVYTGSADRKIRVWA 279
++ L+ S S DK+LKIW S +CL+++K H + V + + +GS D +R+W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 280 KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE---------DSA 330
+ K + TL H V+A+ + DG+++ S + D +WD D
Sbjct: 138 ---DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 194
Query: 331 NHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVK 390
N V +GK IL + + D T+++W S G+ CL GH
Sbjct: 195 NPPVSFVKFSPNGKYIL----------AATLDNTLKLWDY-SKGK--CLKTYTGHKNEKY 241
Query: 391 SLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
+ A G + SGS D + W +
Sbjct: 242 CIFA--NFSVTGGKWIVSGSEDNLVYIWNL 269
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 10/171 (5%)
Query: 224 LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPF 282
LI S S+D+S++IW +CL+++ AH D V+AV + G+ + + S D R+W
Sbjct: 124 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH 342
+ LI + V+ + S +G + + D ++ +WD TG +
Sbjct: 184 GQCLKTLI---DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH-KNE 239
Query: 343 GKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKS 391
I +V G ++SGS D V IW + + L+GHT V S
Sbjct: 240 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQKLQGHTDVVIS 287
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 28/220 (12%)
Query: 211 HGDAVTGLAV--NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
H AV+ + N + S S DK +KIW A D + ++I H+ ++ VA S+ +
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
+ S D+ +++W + + TL+ H + V + ++ SG+ D S+ +WD
Sbjct: 85 SASDDKTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD-- 138
Query: 328 DSANHMVVTG----ALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAV 381
V TG L H + + N G L++S S D RIW S G+ CL
Sbjct: 139 ------VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKT 189
Query: 382 LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
L P S + G+ + + +LD ++ W S
Sbjct: 190 LIDDDNPPVSFVKFSPNGK----YILAATLDNTLKLWDYS 225
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 14/194 (7%)
Query: 231 DKSLKIWRASDLRCLESIKAHEDAVNAVAV-SAGGTVYTGSADRKIRVWAKPFNEKRHAL 289
D ++++ + + +AH D + ++AV V +GS D +++W E AL
Sbjct: 76 DFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW---ENNWAL 132
Query: 290 IATLEKHKSAVNALALS-DDGTVLFSGACDRSILVWDR-EDSANHMVVTGALRGHGKAIL 347
T E H+ V +A + D + SG DR++ VW + + N + TG RG
Sbjct: 133 EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDY 192
Query: 348 CLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVF 407
+ +++ S D T++IW + C+A LEGH V + +
Sbjct: 193 YPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVF-----HPTLPIII 244
Query: 408 SGSLDGEIRAWQVS 421
SGS DG ++ W S
Sbjct: 245 SGSEDGTLKIWNSS 258
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 69/174 (39%), Gaps = 24/174 (13%)
Query: 234 LKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIAT 292
+++W + SI+ E V A A + GS D +IRV FN +
Sbjct: 37 VELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV----FNYNTGEKVVD 92
Query: 293 LEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLI-- 350
E H + ++A+ + SG+ D ++ +W+ E N+ + GH ++C+
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE---NNWALEQTFEGHEHFVMCVAFN 149
Query: 351 -NVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGV 403
SG DRTV++W G + P +LT E G N V
Sbjct: 150 PKDPSTFASGCLDRTVKVWSL-------------GQSTPNFTLTTGQERGVNYV 190
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 356 LMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEI 415
++SGS D TV++W + + EGH V + ++ + SG LD +
Sbjct: 112 VLSGSDDLTVKLWNW--ENNWALEQTFEGHEHFVMCVAFNPKDPS----TFASGCLDRTV 165
Query: 416 RAWQVSVSCPN 426
+ W + S PN
Sbjct: 166 KVWSLGQSTPN 176
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 89/210 (42%), Gaps = 29/210 (13%)
Query: 221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA-GGTVYTGSADRKIRVWA 279
++ L+ S S DK+LKIW S +CL+++K H + V + + +GS D +R+W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW- 137
Query: 280 KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE---------DSA 330
+ K + TL H V+A+ + DG+++ S + D +WD D
Sbjct: 138 ---DVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 194
Query: 331 NHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVK 390
N V +GK IL + + D +++W S G+ CL GH
Sbjct: 195 NPPVSFVKFSPNGKYIL----------AATLDNDLKLWDY-SKGK--CLKTYTGHKNEKY 241
Query: 391 SLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
+ A G + SGS D + W +
Sbjct: 242 CIFA--NFSVTGGKWIVSGSEDNMVYIWNL 269
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 96/216 (44%), Gaps = 20/216 (9%)
Query: 211 HGDAVTG--LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
H AV+ + N + S S DK +KIW A D + ++I H+ ++ VA S+ +
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
+ S D+ +++W + + TL+ H + V + ++ SG+ D S+ +WD +
Sbjct: 85 SASDDKTLKIW----DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 328 DSANHMVVTGALRGHGKAILCL-INVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGH 385
+ L H + + N G L++S S D RIW S G+ CL L
Sbjct: 141 TG----MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS-GQ--CLKTLIDD 193
Query: 386 TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
P S + G+ + + +LD +++ W S
Sbjct: 194 DNPPVSFVKFSPNGK----YILAATLDNDLKLWDYS 225
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 86/199 (43%), Gaps = 13/199 (6%)
Query: 224 LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPF 282
LI S S+D+S++IW CL+++ AH D V+AV + G+ + + S D R+W
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 183
Query: 283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH 342
+ LI + V+ + S +G + + D + +WD TG +
Sbjct: 184 GQCLKTLI---DDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGH-KNE 239
Query: 343 GKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQ 400
I +V G ++SGS D V IW + + L+GHT V S E
Sbjct: 240 KYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTK---EIVQKLQGHTDVVISTACHPTE-- 294
Query: 401 NGVVSVFSGSLDGEIRAWQ 419
+++ + D I+ W+
Sbjct: 295 -NIIASAALENDKTIKLWK 312
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 100/237 (42%), Gaps = 47/237 (19%)
Query: 210 EHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYT 268
+H + + N I S S DK++K+W C+++ H + V V + GT + +
Sbjct: 192 DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS 251
Query: 269 GSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDD-------------------- 308
S D+ +RVW E + A L +H+ V ++ + +
Sbjct: 252 CSNDQTVRVWVVATKECK----AELREHRHVVECISWAPESSYSSISEATGSETKKSGKP 307
Query: 309 GTVLFSGACDRSILVWDREDSANHMVVTG----ALRGHGKAILCLINVAG--LLMSGSAD 362
G L SG+ D++I +WD V TG L GH + ++ +G ++S + D
Sbjct: 308 GPFLLSGSRDKTIKMWD--------VSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADD 359
Query: 363 RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ 419
+T+R+W + C+ L H V SL + V +GS+D ++ W+
Sbjct: 360 KTLRVWDYKNK---RCMKTLNAHEHFVTSL-----DFHKTAPYVVTGSVDQTVKVWE 408
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 103/237 (43%), Gaps = 49/237 (20%)
Query: 211 HGDAVTGLAVNNG--LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VY 267
H D+V ++ ++ L+ S S D ++K+W C+ ++ H+ V++V++ G +
Sbjct: 149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV 208
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327
+ S D+ I++W + + T H+ V + + DGT++ S + D+++ VW
Sbjct: 209 SASRDKTIKMW----EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW--- 261
Query: 328 DSANHMVVT----GALRGHGKAILCL----------INVAG------------LLMSGSA 361
+V T LR H + C+ I+ A L+SGS
Sbjct: 262 -----VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316
Query: 362 DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAW 418
D+T+++W + CL L GH V+ + +G + S + D +R W
Sbjct: 317 DKTIKMWDVSTG---MCLMTLVGHDNWVRGVLF-----HSGGKFILSCADDKTLRVW 365
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 14/130 (10%)
Query: 293 LEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI--LCLI 350
L H+S V + +V+ S + D +I VWD E L+GH ++ +
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD----FERTLKGHTDSVQDISFD 159
Query: 351 NVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGS 410
+ LL S SAD T+++W F C+ + GH V S++ + NG + S S
Sbjct: 160 HSGKLLASCSADMTIKLWDFQG---FECIRTMHGHDHNVSSVSIMP----NG-DHIVSAS 211
Query: 411 LDGEIRAWQV 420
D I+ W+V
Sbjct: 212 RDKTIKMWEV 221
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 14/177 (7%)
Query: 248 IKAHEDAVNAVAV-SAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALS 306
+AH D + ++AV V +GS D +++W E AL T E H+ V +A +
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW---ENNWALEQTFEGHEHFVMCVAFN 149
Query: 307 -DDGTVLFSGACDRSILVWDR-EDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRT 364
D + SG DR++ VW + + N + TG RG + +++ S D T
Sbjct: 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT 209
Query: 365 VRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
++IW + C+A LEGH V + + SGS DG ++ W S
Sbjct: 210 IKIWDYQTK---SCVATLEGHMSNVSFAVF-----HPTLPIIISGSEDGTLKIWNSS 258
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 24/174 (13%)
Query: 234 LKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIAT 292
++IW + SI+ E V A A + GS D +IRV FN +
Sbjct: 37 VEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRV----FNYNTGEKVVD 92
Query: 293 LEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLI-- 350
E H + ++A+ + SG+ D ++ +W+ E N+ + GH ++C+
Sbjct: 93 FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE---NNWALEQTFEGHEHFVMCVAFN 149
Query: 351 -NVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGV 403
SG DRTV++W G + P +LT E G N V
Sbjct: 150 PKDPSTFASGCLDRTVKVWSL-------------GQSTPNFTLTTGQERGVNYV 190
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 356 LMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEI 415
++SGS D TV++W + + EGH V + ++ + SG LD +
Sbjct: 112 VLSGSDDLTVKLWNW--ENNWALEQTFEGHEHFVMCVAFNPKDPS----TFASGCLDRTV 165
Query: 416 RAWQVSVSCPN 426
+ W + S PN
Sbjct: 166 KVWSLGQSTPN 176
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 15/165 (9%)
Query: 211 HGDAV--TGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VY 267
H DAV + + I S DK+L++++A L IKAHED V A S+ + +
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGT--VLFSGACDRSILVWD 325
T SAD+K+++W + L+ T ++H VN ++ +L +G+ D + +WD
Sbjct: 681 TCSADKKVKIW----DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 736
Query: 326 REDSANHMVVTGALRGHGKAI-LCLINVAG-LLMSGSADRTVRIW 368
N + GH ++ C + LL S SAD T+R+W
Sbjct: 737 ----LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 88/198 (44%), Gaps = 29/198 (14%)
Query: 231 DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG-TVYTGSADRKIRVWAKPFNEKRHAL 289
D ++KI + R S H+ AV + +A G T+ + S D I+VW +
Sbjct: 989 DGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD----- 1043
Query: 290 IATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALR-----GHGK 344
L+ H+ V L D +L S + D ++ VW+ V+TG + G
Sbjct: 1044 YVFLQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWN--------VITGRIERDFTCHQGT 1094
Query: 345 AILCLINV-AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGV 403
+ C I+ A S SAD+T +IW S L L+GH V+ +A + +G
Sbjct: 1095 VLSCAISSDATKFSSTSADKTAKIW---SFDLLSPLHELKGHNGCVRC-SAFSLDG---- 1146
Query: 404 VSVFSGSLDGEIRAWQVS 421
+ + +G +GEIR W VS
Sbjct: 1147 ILLATGDDNGEIRIWNVS 1164
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 220 VNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTG-SADRKIRVW 278
+ + + S S+D ++K+W R H+ V + A+S+ T ++ SAD+ ++W
Sbjct: 1060 LQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1119
Query: 279 AKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRED 328
+ H L + H V A S DG +L +G + I +W+ D
Sbjct: 1120 SFDLLSPLHEL----KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSD 1165
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 88/220 (40%), Gaps = 24/220 (10%)
Query: 221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTG-SADRKIRVW- 278
N+ L+ + S D LK+W + C ++ H ++VN S + SAD +R+W
Sbjct: 719 NHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD 778
Query: 279 ------AKPFNEKRHALIAT--LEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSA 330
K N KR L + E + V + S DG + A ++ +L++D S
Sbjct: 779 VRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK-VLLFDIHTSG 837
Query: 331 NHMVVTGALRGHGKAI-LCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKP 388
++ GH I C + L + + V +W D R +A GH
Sbjct: 838 ---LLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELW--NIDSRLK-VADCRGHLSW 891
Query: 389 VKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSS 428
V + + +G S + S D IR W+ C NS+
Sbjct: 892 VHGVM-FSPDGS----SFLTASDDQTIRVWETKKVCKNSA 926
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 80/165 (48%), Gaps = 15/165 (9%)
Query: 211 HGDAV--TGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VY 267
H DAV + + I S DK+L++++A L IKAHED V A S+ + +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGT--VLFSGACDRSILVWD 325
T SAD+K+++W + L+ T ++H VN ++ +L +G+ D + +WD
Sbjct: 674 TCSADKKVKIW----DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWD 729
Query: 326 REDSANHMVVTGALRGHGKAI-LCLINVAG-LLMSGSADRTVRIW 368
N + GH ++ C + LL S SAD T+R+W
Sbjct: 730 ----LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 88/198 (44%), Gaps = 29/198 (14%)
Query: 231 DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG-TVYTGSADRKIRVWAKPFNEKRHAL 289
D ++KI + R S H+ AV + +A G T+ + S D I+VW +
Sbjct: 982 DGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD----- 1036
Query: 290 IATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALR-----GHGK 344
L+ H+ V L D +L S + D ++ VW+ V+TG + G
Sbjct: 1037 YVFLQAHQETVKDFRLLQDSRLL-SWSFDGTVKVWN--------VITGRIERDFTCHQGT 1087
Query: 345 AILCLINV-AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGV 403
+ C I+ A S SAD+T +IW S L L+GH V+ +A + +G
Sbjct: 1088 VLSCAISSDATKFSSTSADKTAKIW---SFDLLSPLHELKGHNGCVRC-SAFSLDG---- 1139
Query: 404 VSVFSGSLDGEIRAWQVS 421
+ + +G +GEIR W VS
Sbjct: 1140 ILLATGDDNGEIRIWNVS 1157
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 220 VNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTG-SADRKIRVW 278
+ + + S S+D ++K+W R H+ V + A+S+ T ++ SAD+ ++W
Sbjct: 1053 LQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112
Query: 279 AKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRED 328
+ H L + H V A S DG +L +G + I +W+ D
Sbjct: 1113 SFDLLSPLHEL----KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSD 1158
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 88/220 (40%), Gaps = 24/220 (10%)
Query: 221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTG-SADRKIRVW- 278
N+ L+ + S D LK+W + C ++ H ++VN S + SAD +R+W
Sbjct: 712 NHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWD 771
Query: 279 ------AKPFNEKRHALIAT--LEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSA 330
K N KR L + E + V + S DG + A ++ +L++D S
Sbjct: 772 VRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNK-VLLFDIHTSG 830
Query: 331 NHMVVTGALRGHGKAI-LCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKP 388
++ GH I C + L + + V +W D R +A GH
Sbjct: 831 ---LLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELW--NIDSRLK-VADCRGHLSW 884
Query: 389 VKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSS 428
V + + +G S + S D IR W+ C NS+
Sbjct: 885 VHGVM-FSPDGS----SFLTASDDQTIRVWETKKVCKNSA 919
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 83/166 (50%), Gaps = 17/166 (10%)
Query: 209 IEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAV-NAVAVSAGGTVY 267
I H V L+ +G++ S SWDK+ K+W+ L + +++AH +V +A VS +
Sbjct: 101 IGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSL--VYNLQAHNASVWDAKVVSFSENKF 158
Query: 268 -TGSADRKIRVWAKPFNEKRHALIATLEK-HKSAVNALALSDDGTVLFSGACDRSILVWD 325
T SAD+ I++W N+K +I T H V LA+ DDG + +C L+
Sbjct: 159 LTASADKTIKLWQ---NDK---VIKTFSGIHNDVVRHLAVVDDGHFI---SCSNDGLIKL 209
Query: 326 REDSANHMVVTGALRGHGKAILCL-INVAGLLMSGSADRTVRIWQR 370
+ ++ T GH + C+ + G ++S DRTVRIW +
Sbjct: 210 VDXHTGDVLRT--YEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSK 253
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 63/151 (41%), Gaps = 13/151 (8%)
Query: 143 GSVKSVTFCDGKIFTAHQDCKIRVWQXXXXXXXXXXXXXXXVNDRLLRFMLPNSYVTVRR 202
G+V S++F DG + + D +VW+ + +++ F N ++T
Sbjct: 105 GNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFS-ENKFLTASA 163
Query: 203 HKK-KLWIE----------HGDAVTGLA-VNNGLIYSVSWDKSLKIWRASDLRCLESIKA 250
K KLW H D V LA V++G S S D +K+ L + +
Sbjct: 164 DKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEG 223
Query: 251 HEDAVNAVAVSAGGTVYTGSADRKIRVWAKP 281
HE V + + G + + DR +R+W+K
Sbjct: 224 HESFVYCIKLLPNGDIVSCGEDRTVRIWSKE 254
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 35/179 (19%), Positives = 72/179 (40%), Gaps = 24/179 (13%)
Query: 122 YDRTGTTWTS---INTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQXXXXXXXXXX 178
+D+T W + +++S K V+F + K TA D I++WQ
Sbjct: 122 WDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSG 181
Query: 179 XXXXXV---------------NDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV-NN 222
V ND L++ + ++ +R ++ H V + + N
Sbjct: 182 IHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEG-----HESFVYCIKLLPN 236
Query: 223 GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKP 281
G I S D++++IW + + I ++ +V + G + GS+D +R++++
Sbjct: 237 GDIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXSNGDIIVGSSDNLVRIFSQE 295
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 9/147 (6%)
Query: 225 IYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAV-SAGGTVYTGSADRKIRVWAKP-F 282
+ SVS D ++++W D + + +N+V S + G D I P F
Sbjct: 32 VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTXIN--GVPLF 89
Query: 283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH 342
+ TL H+ V +L+ D V+ SG+ D++ VW ++ A
Sbjct: 90 ATSGEDPLYTLIGHQGNVCSLSFQD--GVVISGSWDKTAKVWKEGSLVYNLQAHNASVWD 147
Query: 343 GKAILCLINVAGLLMSGSADRTVRIWQ 369
K + N ++ SAD+T+++WQ
Sbjct: 148 AKVVSFSEN---KFLTASADKTIKLWQ 171
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 68/178 (38%), Gaps = 24/178 (13%)
Query: 247 SIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALS 306
++K H+ V V V + S D +R+W+K L + + +N++
Sbjct: 13 TLKGHDQDVRDVVAVDDSKVASVSRDGTVRLWSKD----DQWLGTVVYTGQGFLNSVCYD 68
Query: 307 DDGTVLFSGACDRSI-----LVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSA 361
+ +L G D I ED ++ GH + L G+++SGS
Sbjct: 69 SEKELLLFGGKDTXINGVPLFATSGEDPLYTLI------GHQGNVCSLSFQDGVVISGSW 122
Query: 362 DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ 419
D+T ++W+ GS + L+ H V V+ + S D I+ WQ
Sbjct: 123 DKTAKVWKEGS-----LVYNLQAHNASVWDAKVVSFSENK----FLTASADKTIKLWQ 171
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 24/186 (12%)
Query: 247 SIKAHEDAVNAVAVSAG--GTVYTGSADRKIRVWAKPFNEKRHAL-IATLEKHKSAVNAL 303
+++ H V ++A SAG + + S D+ + W ++++ + + + + H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 304 ALSDDGTVLFSGACDRSILVWDREDSANHMVVTGA----LRGHGKAILC--LINVAGLLM 357
L+ DG S + D+++ +WD V TG GH ++ + A +++
Sbjct: 72 TLTADGAYALSASWDKTLRLWD--------VATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 358 SGSADRTVRIWQ-RGSDGRFGCLAVLEGHTKPVKSLTAV-TEEGQNGVVSVFSGSLDGEI 415
SGS D+T+++W +G CLA L GH V + V E+ + V++ S D +
Sbjct: 124 SGSRDKTIKVWTIKGQ-----CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178
Query: 416 RAWQVS 421
+AW ++
Sbjct: 179 KAWNLN 184
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Query: 224 LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG-------TVYTGSADRKIR 276
+I S S DK++K+W +CL ++ H D V+ V V T+ + D+ ++
Sbjct: 121 MIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 277 VWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD 325
W N + + A H S +N L S DGT++ S D I++W+
Sbjct: 180 AW----NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 63/160 (39%), Gaps = 18/160 (11%)
Query: 218 LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIR 276
L + S SWDK+L++W + + H+ V +V + + + +GS D+ I+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 277 VWAKPFNEKRHALIATLEKHKSAVNALAL------SDDGTVLFSGACDRSILVWDREDSA 330
VW + +ATL H V+ + + DD + S D+ + W+
Sbjct: 133 VWT-----IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN----L 183
Query: 331 NHMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVRIW 368
N + GH I L L+ S D + +W
Sbjct: 184 NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 12/140 (8%)
Query: 289 LIATLEKHKSAVNALALS-DDGTVLFSGACDRSILVWDRE-DSANHMVVTGALRGHGKAI 346
L TLE H V +LA S +L S + D++++ W D V + +GH +
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 347 L-CLINVAGLL-MSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVV 404
C + G +S S D+T+R+W + + GH V S+ +
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDVMSVDIDKKASM---- 121
Query: 405 SVFSGSLDGEIRAWQVSVSC 424
+ SGS D I+ W + C
Sbjct: 122 -IISGSRDKTIKVWTIKGQC 140
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 24/186 (12%)
Query: 247 SIKAHEDAVNAVAVSAG--GTVYTGSADRKIRVWAKPFNEKRHAL-IATLEKHKSAVNAL 303
+++ H V ++A SAG + + S D+ + W ++++ + + + + H V
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 304 ALSDDGTVLFSGACDRSILVWDREDSANHMVVTGA----LRGHGKAILC--LINVAGLLM 357
L+ DG S + D+++ +WD V TG GH ++ + A +++
Sbjct: 66 TLTADGAYALSASWDKTLRLWD--------VATGETYQRFVGHKSDVMSVDIDKKASMII 117
Query: 358 SGSADRTVRIWQ-RGSDGRFGCLAVLEGHTKPVKSLTAV-TEEGQNGVVSVFSGSLDGEI 415
SGS D+T+++W +G CLA L GH V + V E+ + V++ S D +
Sbjct: 118 SGSRDKTIKVWTIKGQ-----CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 172
Query: 416 RAWQVS 421
+AW ++
Sbjct: 173 KAWNLN 178
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Query: 224 LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG-------TVYTGSADRKIR 276
+I S S DK++K+W +CL ++ H D V+ V V T+ + D+ ++
Sbjct: 115 MIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 173
Query: 277 VWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD 325
W N + + A H S +N L S DGT++ S D I++W+
Sbjct: 174 AW----NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 63/160 (39%), Gaps = 18/160 (11%)
Query: 218 LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIR 276
L + S SWDK+L++W + + H+ V +V + + + +GS D+ I+
Sbjct: 67 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 126
Query: 277 VWAKPFNEKRHALIATLEKHKSAVNALAL------SDDGTVLFSGACDRSILVWDREDSA 330
VW + +ATL H V+ + + DD + S D+ + W+
Sbjct: 127 VWT-----IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN----L 177
Query: 331 NHMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVRIW 368
N + GH I L L+ S D + +W
Sbjct: 178 NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 217
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 12/140 (8%)
Query: 289 LIATLEKHKSAVNALALS-DDGTVLFSGACDRSILVWDRE-DSANHMVVTGALRGHGKAI 346
L TLE H V +LA S +L S + D++++ W D V + +GH +
Sbjct: 3 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 62
Query: 347 L-CLINVAGLL-MSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVV 404
C + G +S S D+T+R+W + + GH V S+ +
Sbjct: 63 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDVMSVDIDKKASM---- 115
Query: 405 SVFSGSLDGEIRAWQVSVSC 424
+ SGS D I+ W + C
Sbjct: 116 -IISGSRDKTIKVWTIKGQC 134
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 24/186 (12%)
Query: 247 SIKAHEDAVNAVAVSAG--GTVYTGSADRKIRVWAKPFNEKRHAL-IATLEKHKSAVNAL 303
+++ H V ++A SAG + + S D+ + W ++++ + + + + H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 304 ALSDDGTVLFSGACDRSILVWDREDSANHMVVTGA----LRGHGKAILC--LINVAGLLM 357
L+ DG S + D+++ +WD V TG GH ++ + A +++
Sbjct: 72 TLTADGAYALSASWDKTLRLWD--------VATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 358 SGSADRTVRIWQ-RGSDGRFGCLAVLEGHTKPVKSLTAV-TEEGQNGVVSVFSGSLDGEI 415
SGS D+T+++W +G CLA L GH V + V E+ + V++ S D +
Sbjct: 124 SGSRDKTIKVWTIKGQ-----CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178
Query: 416 RAWQVS 421
+AW ++
Sbjct: 179 KAWNLN 184
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Query: 224 LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG-------TVYTGSADRKIR 276
+I S S DK++K+W +CL ++ H D V+ V V T+ + D+ ++
Sbjct: 121 MIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 277 VWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD 325
W N + + A H S +N L S DGT++ S D I++W+
Sbjct: 180 AW----NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 63/160 (39%), Gaps = 18/160 (11%)
Query: 218 LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIR 276
L + S SWDK+L++W + + H+ V +V + + + +GS D+ I+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 277 VWAKPFNEKRHALIATLEKHKSAVNALAL------SDDGTVLFSGACDRSILVWDREDSA 330
VW + +ATL H V+ + + DD + S D+ + W+
Sbjct: 133 VWT-----IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN----L 183
Query: 331 NHMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVRIW 368
N + GH I L L+ S D + +W
Sbjct: 184 NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 12/140 (8%)
Query: 289 LIATLEKHKSAVNALALS-DDGTVLFSGACDRSILVWDRE-DSANHMVVTGALRGHGKAI 346
L TLE H V +LA S +L S + D++++ W D V + +GH +
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 347 L-CLINVAGLL-MSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVV 404
C + G +S S D+T+R+W + + GH V S+ +
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDVMSVDIDKKASM---- 121
Query: 405 SVFSGSLDGEIRAWQVSVSC 424
+ SGS D I+ W + C
Sbjct: 122 -IISGSRDKTIKVWTIKGQC 140
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 24/186 (12%)
Query: 247 SIKAHEDAVNAVAVSAG--GTVYTGSADRKIRVWAKPFNEKRHAL-IATLEKHKSAVNAL 303
+++ H V ++A SAG + + S D+ + W ++++ + + + + H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 304 ALSDDGTVLFSGACDRSILVWDREDSANHMVVTGA----LRGHGKAILC--LINVAGLLM 357
L+ DG S + D+++ +WD V TG GH ++ + A +++
Sbjct: 72 TLTADGAYALSASWDKTLRLWD--------VATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 358 SGSADRTVRIWQ-RGSDGRFGCLAVLEGHTKPVKSLTAV-TEEGQNGVVSVFSGSLDGEI 415
SGS D+T+++W +G CLA L GH V + V E+ + V++ S D +
Sbjct: 124 SGSRDKTIKVWTIKGQ-----CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178
Query: 416 RAWQVS 421
+AW ++
Sbjct: 179 KAWNLN 184
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 12/109 (11%)
Query: 224 LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG-------TVYTGSADRKIR 276
+I S S DK++K+W +CL ++ H D V+ V V T+ + D+ ++
Sbjct: 121 MIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 277 VWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD 325
W N + + A H S +N L S DGT++ S D I++W+
Sbjct: 180 AW----NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 63/160 (39%), Gaps = 18/160 (11%)
Query: 218 LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIR 276
L + S SWDK+L++W + + H+ V +V + + + +GS D+ I+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 277 VWAKPFNEKRHALIATLEKHKSAVNALAL------SDDGTVLFSGACDRSILVWDREDSA 330
VW + +ATL H V+ + + DD + S D+ + W+
Sbjct: 133 VWT-----IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN----L 183
Query: 331 NHMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVRIW 368
N + GH I L L+ S D + +W
Sbjct: 184 NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 12/140 (8%)
Query: 289 LIATLEKHKSAVNALALS-DDGTVLFSGACDRSILVWDRE-DSANHMVVTGALRGHGKAI 346
L TLE H V +LA S +L S + D++++ W D V + +GH +
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 347 L-CLINVAGLL-MSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVV 404
C + G +S S D+T+R+W + + GH V S+ +
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDVMSVDIDKKASM---- 121
Query: 405 SVFSGSLDGEIRAWQVSVSC 424
+ SGS D I+ W + C
Sbjct: 122 -IISGSRDKTIKVWTIKGQC 140
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 24/186 (12%)
Query: 247 SIKAHEDAVNAVAVSAG--GTVYTGSADRKIRVWAKPFNEKRHAL-IATLEKHKSAVNAL 303
+++ H V ++A SAG + + S D+ + W ++++ + + + + H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 304 ALSDDGTVLFSGACDRSILVWDREDSANHMVVTGA----LRGHGKAILC--LINVAGLLM 357
L+ DG S + D+++ +WD V TG GH ++ + A +++
Sbjct: 72 TLTADGAYALSASWDKTLRLWD--------VATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 358 SGSADRTVRIWQ-RGSDGRFGCLAVLEGHTKPVKSLTAV-TEEGQNGVVSVFSGSLDGEI 415
SGS D+T+++W +G CLA L GH V + V E+ + V++ S D +
Sbjct: 124 SGSRDKTIKVWTIKGQ-----CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178
Query: 416 RAWQVS 421
+AW ++
Sbjct: 179 KAWNLN 184
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 87/208 (41%), Gaps = 24/208 (11%)
Query: 224 LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG-------TVYTGSADRKIR 276
+I S S DK++K+W +CL ++ H D V+ V V T+ + D+ ++
Sbjct: 121 MIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 277 VWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVT 336
W N + + A H S +N L S DGT++ S D I++W+ +A + T
Sbjct: 180 AW----NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL--AAKKAMYT 233
Query: 337 GALRGHGKAILCLINVAGLLMSGSADRTVRIW----QRGSDGRFGCLAVLEGHTKPVKSL 392
L + + ++ + ++++ Q D A +P
Sbjct: 234 --LSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVS 291
Query: 393 TAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
A + +GQ ++F+G D IR WQV
Sbjct: 292 LAWSADGQ----TLFAGYTDNVIRVWQV 315
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 63/160 (39%), Gaps = 18/160 (11%)
Query: 218 LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIR 276
L + S SWDK+L++W + + H+ V +V + + + +GS D+ I+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIK 132
Query: 277 VWAKPFNEKRHALIATLEKHKSAVNALAL------SDDGTVLFSGACDRSILVWDREDSA 330
VW + +ATL H V+ + + DD + S D+ + W+
Sbjct: 133 VWT-----IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL---- 183
Query: 331 NHMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVRIW 368
N + GH I L L+ S D + +W
Sbjct: 184 NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 12/140 (8%)
Query: 289 LIATLEKHKSAVNALALS-DDGTVLFSGACDRSILVWDRE-DSANHMVVTGALRGHGKAI 346
L TLE H V +LA S +L S + D++++ W D V + +GH +
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 347 L-CLINVAGLL-MSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVV 404
C + G +S S D+T+R+W + + GH V S+ +
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDVMSVDIDKKASM---- 121
Query: 405 SVFSGSLDGEIRAWQVSVSC 424
+ SGS D I+ W + C
Sbjct: 122 -IISGSRDKTIKVWTIKGQC 140
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 15/169 (8%)
Query: 211 HGDAV--TGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VY 267
H DAV + + I S DK+L++++A L IKAHED V A S +
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDG--TVLFSGACDRSILVWD 325
T S D+K+++W N L+ T ++H VN ++ +L +G+ D + +WD
Sbjct: 680 TCSVDKKVKIW----NSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWD 735
Query: 326 REDSANHMVVTGALRGHGKAI-LCLINVAG-LLMSGSADRTVRIWQRGS 372
N + GH ++ C + LL S SAD T+++W S
Sbjct: 736 ----LNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATS 780
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 227 SVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY-TGSADRKIRVWAKPFNEK 285
S S DK+ KIW L L ++ H V A S T+ TG + +IR+W E
Sbjct: 1108 STSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGEL 1167
Query: 286 RHALIATLEKHKSA-----VNALALSDDGTVLFSGA 316
H L A L + +A V L S DG +L S
Sbjct: 1168 LH-LCAPLSEEGAATHGGWVTDLCFSPDGKMLISAG 1202
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 100/282 (35%), Gaps = 70/282 (24%)
Query: 211 HGDAV--TGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG---T 265
H D V + ++ I + S DK +KIW + + + H + VN +
Sbjct: 662 HEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLL 721
Query: 266 VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD 325
+ TGS+D +++W E R+ + H ++VN S D +L S + D ++ +WD
Sbjct: 722 LATGSSDCFLKLWDLNQKECRNTMFG----HTNSVNHCRFSPDDKLLASCSADGTLKLWD 777
Query: 326 R------------------EDSANHMVVT---------GA---LRGHGKAILCLINVAGL 355
ED M V GA + K L I+ +GL
Sbjct: 778 ATSANERKSINVKQFFLNLEDPQEDMEVIVKCCSWSADGARIMVAAKNKIFLFDIHTSGL 837
Query: 356 L-----------------------MSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSL 392
L + + V +W S + +A GH V +
Sbjct: 838 LGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSK---VADCRGHLSWVHGV 894
Query: 393 TAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSSPLNLQK 434
+ +G S + S D IR W+ C NS+ + Q+
Sbjct: 895 M-FSPDGS----SFLTSSDDQTIRLWETKKVCKNSAVMLKQE 931
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Query: 220 VNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTG-SADRKIRVW 278
+ N + S S+D ++K+W + H+ V + +S T ++ SAD+ ++W
Sbjct: 1059 LKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIW 1118
Query: 279 AKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD 325
+ H L H V A S D T+L +G + I +W+
Sbjct: 1119 SFDLLLPLHEL----RGHNGCVRCSAFSVDSTLLATGDDNGEIRIWN 1161
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 82/206 (39%), Gaps = 49/206 (23%)
Query: 233 SLKIWRASDLRCLESIKAHEDAVNAVAVSAG-GTVYTGSADRKIRVWAKPFNEKRHALIA 291
+++I + R +S H+ V + +A T+ + S D +I+VW ++
Sbjct: 990 AIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDK-----CI 1044
Query: 292 TLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRG-----HGKAI 346
L H+ V L + +L S + D ++ VW+ ++TG G +
Sbjct: 1045 FLRGHQETVKDFRLLKNSRLL-SWSFDGTVKVWN--------IITGNKEKDFVCHQGTVL 1095
Query: 347 LCLI-NVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVV- 404
C I + A S SAD+T +IW F L P+ L G NG V
Sbjct: 1096 SCDISHDATKFSSTSADKTAKIWS------FDLLL-------PLHEL-----RGHNGCVR 1137
Query: 405 -SVFS--------GSLDGEIRAWQVS 421
S FS G +GEIR W VS
Sbjct: 1138 CSAFSVDSTLLATGDDNGEIRIWNVS 1163
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 90/187 (48%), Gaps = 26/187 (13%)
Query: 247 SIKAHEDAVNAVAVSAG--GTVYTGSADRKIRVWAKPFNEKRHAL-IATLEKHKSAVNAL 303
+++ H V ++A SAG + + S D+ + W ++++ + + + + H V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 304 ALSDDGTVLFSGACDRSILVWDREDSANHMVVTGA----LRGHGKAILCLINV---AGLL 356
L+ DG S + D+++ +WD V TG GH K+ + +++ A +
Sbjct: 72 TLTADGAYALSASWDKTLRLWD--------VATGETYQRFVGH-KSDVXSVDIDKKASXI 122
Query: 357 MSGSADRTVRIWQ-RGSDGRFGCLAVLEGHTKPVKSLTAV-TEEGQNGVVSVFSGSLDGE 414
+SGS D+T+++W +G CLA L GH V + V E+ + V++ S D
Sbjct: 123 ISGSRDKTIKVWTIKGQ-----CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKX 177
Query: 415 IRAWQVS 421
++AW ++
Sbjct: 178 VKAWNLN 184
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 63/160 (39%), Gaps = 18/160 (11%)
Query: 218 LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIR 276
L + S SWDK+L++W + + H+ V +V + + + +GS D+ I+
Sbjct: 73 LTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIK 132
Query: 277 VWAKPFNEKRHALIATLEKHKSAVNALAL------SDDGTVLFSGACDRSILVWDREDSA 330
VW + +ATL H V+ + + DD + S D+ + W+
Sbjct: 133 VWT-----IKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWN----L 183
Query: 331 NHMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVRIW 368
N + GH I L L+ S D + +W
Sbjct: 184 NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLW 223
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 12/108 (11%)
Query: 225 IYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG-------TVYTGSADRKIRV 277
I S S DK++K+W +CL ++ H D V+ V V T+ + D+ ++
Sbjct: 122 IISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKA 180
Query: 278 WAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD 325
W N + + A H S +N L S DGT++ S D I +W+
Sbjct: 181 W----NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 12/140 (8%)
Query: 289 LIATLEKHKSAVNALALS-DDGTVLFSGACDRSILVWDRE-DSANHMVVTGALRGHGKAI 346
L TLE H V +LA S +L S + D++++ W D V + +GH +
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 347 L-CLINVAGLL-MSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVV 404
C + G +S S D+T+R+W + + GH V S+ +
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDVXSV-----DIDKKAS 120
Query: 405 SVFSGSLDGEIRAWQVSVSC 424
+ SGS D I+ W + C
Sbjct: 121 XIISGSRDKTIKVWTIKGQC 140
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 5/131 (3%)
Query: 262 AGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSI 321
AG + + DR+IR+W + + + E H+ V +A S G L S + D +
Sbjct: 27 AGTLLASCGGDRRIRIWGTEGDSWICKSVLS-EGHQRTVRKVAWSPCGNYLASASFDATT 85
Query: 322 LVWDREDSANHMVVTGALRGHGKAI--LCLINVAGLLMSGSADRTVRIWQRGSDGRFGCL 379
+W + V T L GH + + LL + S D++V +W+ + + C+
Sbjct: 86 CIWKKNQDDFECVTT--LEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECV 143
Query: 380 AVLEGHTKPVK 390
+VL HT+ VK
Sbjct: 144 SVLNSHTQDVK 154
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 99/227 (43%), Gaps = 34/227 (14%)
Query: 219 AVNNGLIYSVSWDKSLKIWRASD---LRCLESIKAH-EDAVNAVAVSAGGTVYTGSADRK 274
A + L+ + S DKS+ +W + C+ + +H +D + V + + + S D
Sbjct: 114 APSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDT 173
Query: 275 IRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMV 334
++++ + E ATLE H+S V +LA G L S + DR++ +W + N
Sbjct: 174 VKLYRE--EEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQG 231
Query: 335 VTGALRGHGKAILCLINVAGL----------------LMSGSADRTVRIWQR--GSDGR- 375
V A G + C+ ++G L + D +R++Q SD +
Sbjct: 232 V--ACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQ 289
Query: 376 --FGCLAVL-EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ 419
F A L + H++ V + +E G+++ S S DGE+ W+
Sbjct: 290 PTFSLTAHLHQAHSQDVNCVAWNPKE--PGLLA--SCSDDGEVAFWK 332
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 303 LALSDDGTVLFSGACDRSILVWDREDSANHMVVTGAL-RGHGKAI--LCLINVAGLLMSG 359
LA + GT+L S DR I +W E + + L GH + + + L S
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTE--GDSWICKSVLSEGHQRTVRKVAWSPCGNYLASA 79
Query: 360 SADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSL 392
S D T IW++ D F C+ LEGH VKS+
Sbjct: 80 SFDATTCIWKKNQDD-FECVTTLEGHENEVKSV 111
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 14/163 (8%)
Query: 212 GDAVT-GLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY-TG 269
GD ++ LA + L S + D S K+W + C ++ HE +NA+ G + TG
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG 244
Query: 270 SADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD--RE 327
S D R++ + + + + + +++ S G +L +G D + VWD +
Sbjct: 245 SDDATCRLF--DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 328 DSANHMVVTGALRGHGKAILCL-INVAGL-LMSGSADRTVRIW 368
D A G L GH + CL + G+ + +GS D ++IW
Sbjct: 303 DRA------GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 15/190 (7%)
Query: 190 RFMLPNSYVTVRRHKKKL---WI-EHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCL 245
+ ++ +SY T + H L W+ A +G V G + ++ +LK R ++R
Sbjct: 78 KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT-REGNVRVS 136
Query: 246 ESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALAL 305
+ H ++ + T S D +W + + T H V +L+L
Sbjct: 137 RELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW----DIETGQQTTTFTGHTGDVMSLSL 192
Query: 306 SDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI--LCLINVAGLLMSGSADR 363
+ D + SGACD S +WD + T GH I +C +GS D
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTFT----GHESDINAICFFPNGNAFATGSDDA 248
Query: 364 TVRIWQRGSD 373
T R++ +D
Sbjct: 249 TCRLFDLRAD 258
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 14/163 (8%)
Query: 212 GDAVT-GLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY-TG 269
GD ++ LA + L S + D S K+W + C ++ HE +NA+ G + TG
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG 244
Query: 270 SADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD--RE 327
S D R++ + + + + + +++ S G +L +G D + VWD +
Sbjct: 245 SDDATCRLF--DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 328 DSANHMVVTGALRGHGKAILCL-INVAGL-LMSGSADRTVRIW 368
D A G L GH + CL + G+ + +GS D ++IW
Sbjct: 303 DRA------GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 15/190 (7%)
Query: 190 RFMLPNSYVTVRRHKKKL---WI-EHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCL 245
+ ++ +SY T + H L W+ A +G V G + ++ +LK R ++R
Sbjct: 78 KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT-REGNVRVS 136
Query: 246 ESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALAL 305
+ H ++ + T S D +W + + T H V +L+L
Sbjct: 137 RELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW----DIETGQQTTTFTGHTGDVMSLSL 192
Query: 306 SDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI--LCLINVAGLLMSGSADR 363
+ D + SGACD S +WD + T GH I +C +GS D
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTFT----GHESDINAICFFPNGNAFATGSDDA 248
Query: 364 TVRIWQRGSD 373
T R++ +D
Sbjct: 249 TCRLFDLRAD 258
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 14/163 (8%)
Query: 212 GDAVT-GLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY-TG 269
GD ++ LA + L S + D S K+W + C ++ HE +NA+ G + TG
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG 244
Query: 270 SADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD--RE 327
S D R++ + + + + + +++ S G +L +G D + VWD +
Sbjct: 245 SDDATCRLF--DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 328 DSANHMVVTGALRGHGKAILCL-INVAGL-LMSGSADRTVRIW 368
D A G L GH + CL + G+ + +GS D ++IW
Sbjct: 303 DRA------GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 15/190 (7%)
Query: 190 RFMLPNSYVTVRRHKKKL---WI-EHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCL 245
+ ++ +SY T + H L W+ A +G V G + ++ +LK R ++R
Sbjct: 78 KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT-REGNVRVS 136
Query: 246 ESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALAL 305
+ H ++ + T S D +W + + T H V +L+L
Sbjct: 137 RELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW----DIETGQQTTTFTGHTGDVMSLSL 192
Query: 306 SDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI--LCLINVAGLLMSGSADR 363
+ D + SGACD S +WD + T GH I +C +GS D
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTFT----GHESDINAICFFPNGNAFATGSDDA 248
Query: 364 TVRIWQRGSD 373
T R++ +D
Sbjct: 249 TCRLFDLRAD 258
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 14/163 (8%)
Query: 212 GDAVT-GLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY-TG 269
GD ++ LA + L S + D S K+W + C ++ HE +NA+ G + TG
Sbjct: 196 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG 255
Query: 270 SADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD--RE 327
S D R++ + + + + + +++ S G +L +G D + VWD +
Sbjct: 256 SDDATCRLF--DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 313
Query: 328 DSANHMVVTGALRGHGKAILCL-INVAGL-LMSGSADRTVRIW 368
D A G L GH + CL + G+ + +GS D ++IW
Sbjct: 314 DRA------GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 15/190 (7%)
Query: 190 RFMLPNSYVTVRRHKKKL---WI-EHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCL 245
+ ++ +SY T + H L W+ A +G V G + ++ +LK R ++R
Sbjct: 89 KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT-REGNVRVS 147
Query: 246 ESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALAL 305
+ H ++ + T S D +W + + T H V +L+L
Sbjct: 148 RELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW----DIETGQQTTTFTGHTGDVMSLSL 203
Query: 306 SDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI--LCLINVAGLLMSGSADR 363
+ D + SGACD S +WD + T GH I +C +GS D
Sbjct: 204 APDTRLFVSGACDASAKLWDVREGMCRQTFT----GHESDINAICFFPNGNAFATGSDDA 259
Query: 364 TVRIWQRGSD 373
T R++ +D
Sbjct: 260 TCRLFDLRAD 269
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 14/163 (8%)
Query: 212 GDAVT-GLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY-TG 269
GD ++ LA + L S + D S K+W + C ++ HE +NA+ G + TG
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATG 244
Query: 270 SADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD--RE 327
S D R++ + + + + + +++ S G +L +G D + VWD +
Sbjct: 245 SDDATCRLF--DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 328 DSANHMVVTGALRGHGKAILCL-INVAGL-LMSGSADRTVRIW 368
D A G L GH + CL + G+ + +GS D ++IW
Sbjct: 303 DRA------GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 15/190 (7%)
Query: 190 RFMLPNSYVTVRRHKKKL---WI-EHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCL 245
+ ++ +SY T + H L W+ A +G V G + ++ +LK R ++R
Sbjct: 78 KLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT-REGNVRVS 136
Query: 246 ESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALAL 305
+ H ++ + T S D +W + + T H V +L+L
Sbjct: 137 RELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW----DIETGQQTTTFTGHTGDVMSLSL 192
Query: 306 SDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI--LCLINVAGLLMSGSADR 363
+ D + SGACD S +WD + T GH I +C +GS D
Sbjct: 193 APDTRLFVSGACDASAKLWDVREGMCRQTFT----GHESDINAICFFPNGNAFATGSDDA 248
Query: 364 TVRIWQRGSD 373
T R++ +D
Sbjct: 249 TCRLFDLRAD 258
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 12/180 (6%)
Query: 247 SIKAHEDAVNAVA--VSAGGTVYTGSADRKIRVWAKPFNEKRHALIAT-LEKHKSAVNAL 303
+++AH D V A+A + + + S D+ I +W ++K + + L H V +
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 304 ALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSA 361
LS DG SG+ D + +WD V T GH K +L + ++S S
Sbjct: 437 VLSSDGQFALSGSWDGELRLWDLAAG----VSTRRFVGHTKDVLSVAFSLDNRQIVSASR 492
Query: 362 DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
DRT+++W + ++ EGH V + Q +VS S D ++ W +S
Sbjct: 493 DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSA---SWDKTVKVWNLS 549
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 100/226 (44%), Gaps = 30/226 (13%)
Query: 211 HGDAVTGLAV---NNGLIYSVSWDKSLKIWRAS-DLRCL----ESIKAHEDAVNAVAVSA 262
H D VT +A N +I S S DKS+ +W+ + D + + H V V +S+
Sbjct: 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS 440
Query: 263 GGT-VYTGSADRKIRVW--AKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR 319
G +GS D ++R+W A + +R H V ++A S D + S + DR
Sbjct: 441 DGQFALSGSWDGELRLWDLAAGVSTRRFV------GHTKDVLSVAFSLDNRQIVSASRDR 494
Query: 320 SILVWDREDSANHMVVTGALRGHGKAILCLI----NVAGLLMSGSADRTVRIWQRGSDGR 375
+I +W+ + + G GH + C+ + ++S S D+TV++W +
Sbjct: 495 TIKLWNTLGECKYTISEGG-EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN--- 550
Query: 376 FGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
+ L GHT V S AV+ +G SG DG + W ++
Sbjct: 551 CKLRSTLAGHTGYV-STVAVSPDGS----LCASGGKDGVVLLWDLA 591
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 24/165 (14%)
Query: 225 IYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTV-YTGSADRKIRVWAKPFN 283
I S SWDK++K+W S+ + ++ H V+ VAVS G++ +G D + +W
Sbjct: 534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG 593
Query: 284 EKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRED-------------SA 330
+K ++L A S ++AL S + L A + I +WD E A
Sbjct: 594 KKLYSLEAN-----SVIHALCFSPNRYWL-CAATEHGIKIWDLESKSIVEDLKVDLKAEA 647
Query: 331 NHMVVTGALRGHGKAILCL-INVAG---LLMSGSADRTVRIWQRG 371
+G K I C +N + L SG D +R+W G
Sbjct: 648 EKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 14/157 (8%)
Query: 221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTV-YTGSADRKIRVWA 279
+N +I S WDK +K+W ++ + + H +N V VS G++ +G D + +W
Sbjct: 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW- 242
Query: 280 KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE-----DSANHMV 334
NE +H + TL+ +NAL S + L + A SI +WD E D V
Sbjct: 243 -DLNEGKH--LYTLDG-GDIINALCFSPNRYWLCA-ATGPSIKIWDLEGKIIVDELKQEV 297
Query: 335 VTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQ 369
++ + + L A L +G D VR+WQ
Sbjct: 298 ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 334
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 9/127 (7%)
Query: 247 SIKAHEDAVNAVAVSAG--GTVYTGSADRKIRVWAKPFNEKRHALIA-TLEKHKSAVNAL 303
++K H V +A + + + S D+ I +W +E + + L H V+ +
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 304 ALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSA 361
+S DG SG+ D ++ +WD T GH K +L + + ++SGS
Sbjct: 93 VISSDGQFALSGSWDGTLRLWDLTTGT----TTRRFVGHTKDVLSVAFSSDNRQIVSGSR 148
Query: 362 DRTVRIW 368
D+T+++W
Sbjct: 149 DKTIKLW 155
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 68/155 (43%), Gaps = 17/155 (10%)
Query: 224 LIYSVSWDKSLKIWRASDLRC-----LESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRV 277
+I S S DK++ +W+ + +++ H V+ V +S+ G +GS D +R+
Sbjct: 53 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 112
Query: 278 WAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTG 337
W + H V ++A S D + SG+ D++I +W+ + V
Sbjct: 113 WDLTTGTTTRRFVG----HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD- 167
Query: 338 ALRGHGKAILCLI----NVAGLLMSGSADRTVRIW 368
H + + C+ + +++S D+ V++W
Sbjct: 168 --ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW 200
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 14/157 (8%)
Query: 221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTV-YTGSADRKIRVWA 279
+N +I S WDK +K+W ++ + + H +N V VS G++ +G D + +W
Sbjct: 161 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW- 219
Query: 280 KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE-----DSANHMV 334
NE +H + TL+ +NAL S + L + A SI +WD E D V
Sbjct: 220 -DLNEGKH--LYTLDG-GDIINALCFSPNRYWLCA-ATGPSIKIWDLEGKIIVDELKQEV 274
Query: 335 VTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQ 369
++ + + L A L +G D VR+WQ
Sbjct: 275 ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ 311
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 9/127 (7%)
Query: 247 SIKAHEDAVNAVAVSAG--GTVYTGSADRKIRVWAKPFNEKRHALIA-TLEKHKSAVNAL 303
++K H V +A + + + S D+ I +W +E + + L H V+ +
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 304 ALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSA 361
+S DG SG+ D ++ +WD T GH K +L + + ++SGS
Sbjct: 70 VISSDGQFALSGSWDGTLRLWDLTTGT----TTRRFVGHTKDVLSVAFSSDNRQIVSGSR 125
Query: 362 DRTVRIW 368
D+T+++W
Sbjct: 126 DKTIKLW 132
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 68/155 (43%), Gaps = 17/155 (10%)
Query: 224 LIYSVSWDKSLKIWRASDLRC-----LESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRV 277
+I S S DK++ +W+ + +++ H V+ V +S+ G +GS D +R+
Sbjct: 30 MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 89
Query: 278 WAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTG 337
W + H V ++A S D + SG+ D++I +W+ + V
Sbjct: 90 WDLTTGTTTRRFVG----HTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD- 144
Query: 338 ALRGHGKAILCLI----NVAGLLMSGSADRTVRIW 368
H + + C+ + +++S D+ V++W
Sbjct: 145 --ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW 177
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 17/145 (11%)
Query: 231 DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY-TGSADRKIRVWAKPFNEKRHAL 289
DK +W +C+++ + HE VN+V G + +GS D R++ R
Sbjct: 219 DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLY--DLRADREVA 276
Query: 290 IATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGA----LRGHGKA 345
I + E +++ S G +LF+G D +I VWD V+ G+ L GH
Sbjct: 277 IYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWD--------VLKGSRVSILFGHENR 328
Query: 346 ILCL-INVAGL-LMSGSADRTVRIW 368
+ L ++ G SGS D T+R+W
Sbjct: 329 VSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVS-AGGTVYTGSADRKIRVWA 279
N +Y +++DK+ + +S+ H + ++A + + + + T S D +W
Sbjct: 128 NKCSVYPLTFDKNENMAAKK-----KSVAMHTNYLSACSFTNSDMQILTASGDGTCALW- 181
Query: 280 KPFNEKRHALIATLEKHKSAVNALAL--SDDGTVLFSGACDRSILVWD 325
+ + L+ + H + V L L S+ G SG CD+ +VWD
Sbjct: 182 ---DVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD 226
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 209 IEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVY- 267
I G + +++ L+++ D ++ +W + + HE+ V+ + VS GT +
Sbjct: 283 IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFC 342
Query: 268 TGSADRKIRVWA 279
+GS D +RVWA
Sbjct: 343 SGSWDHTLRVWA 354
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 65/156 (41%), Gaps = 12/156 (7%)
Query: 218 LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG-TVYTGSADRKIR 276
L+ N S SWD SL++W + +C H V +VA S + +G D +R
Sbjct: 75 LSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALR 134
Query: 277 VWAKPFNEKRHALIATLEKHKSAVNALALSD--DGTVLFSGACDRSILVWDREDSANHMV 334
VW E H L + H V+ + S D V+ SG D + VWD A +
Sbjct: 135 VWNVK-GECMHTL--SRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDL---ATGRL 188
Query: 335 VTGALRGHGKAI--LCLINVAGLLMSGSADRTVRIW 368
VT L+GH + + + L S D R+W
Sbjct: 189 VTD-LKGHTNYVTSVTVSPDGSLCASSDKDGVARLW 223
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 12/151 (7%)
Query: 224 LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGS-ADRKIRVWAKPF 282
+I S WD +K+W + R + +K H + V +V VS G++ S D R+W
Sbjct: 168 VIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTK 227
Query: 283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH 342
E + A + +N + S + A ++ I ++D E+ + + +G
Sbjct: 228 GEALSEMAA-----GAPINQICFSPN-RYWMCAATEKGIRIFDLENKDIIVELAPEHQGS 281
Query: 343 GKAILCLINVA-----GLLMSGSADRTVRIW 368
K + +++A L SG D +R+W
Sbjct: 282 KKIVPECVSIAWSADGSTLYSGYTDNVIRVW 312
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 266 VYTGSADRKIRVWAKPFNEKRHALIAT-------LEKHKSAVNALALSDDGTVLFSGACD 318
V + S D+ + W N RH+ + LE H + V+ +ALS++G S + D
Sbjct: 31 VVSTSRDKTLLSWGP--NPDRHSSECSYGLPDRRLEGHSAFVSDVALSNNGNFAVSASWD 88
Query: 319 RSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIW 368
S+ +W+ ++ GH K +L + ++SG D +R+W
Sbjct: 89 HSLRLWNLQNGQCQY----KFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVW 136
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 75/179 (41%), Gaps = 16/179 (8%)
Query: 200 VRRHKKKL-WIEHGDAVTGLAVNNGLIYSVSWDKS-LKIW------RASDLRCLESIKAH 251
+ RH +++ + HG+ V + ++N + + K +K+W S + L+ +
Sbjct: 38 IPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRD 97
Query: 252 EDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTV 311
+ + G T+ G + +W R + A L A ALA+S D V
Sbjct: 98 NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR--IKAELTSSAPACYALAISPDSKV 155
Query: 312 LFSGACDRSILVWDREDSANHMVVTGALRGH--GKAILCLINVAGLLMSGSADRTVRIW 368
FS D +I VWD ++ + +GH G + + + N L +G D TVR W
Sbjct: 156 CFSCCSDGNIAVWD----LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 233 SLKIWR--ASDLRCLESIKAHEDAVNAVAVSAGGTV-YTGSADRKIRVWAKPFNEKRHAL 289
+L IW A R + + A A+A+S V ++ +D I VW + L
Sbjct: 120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVW----DLHNQTL 175
Query: 290 IATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD 325
+ + H + + +S+DGT L++G D ++ WD
Sbjct: 176 VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 231 DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGS--ADRKIRVWAKPFNEKRHA 288
D+ ++IW CL ++ AH + + + +G A ++ +W P K
Sbjct: 220 DRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK--- 276
Query: 289 LIATLEKHKSAVNALALSDDGTVLFSGACDRSILVW 324
+A L+ H S V +L +S DG + S A D ++ +W
Sbjct: 277 -VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 78/207 (37%), Gaps = 29/207 (14%)
Query: 187 RLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLE 246
+LL+ P Y++ WI+ G+ LAV +++W + L
Sbjct: 59 QLLQMEQPGEYIS-----SVAWIKEGNY---LAVGTS-------SAEVQLWDVQQQKRLR 103
Query: 247 SIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALS 306
++ +H V +++ + + S R + H +ATL H V L +
Sbjct: 104 NMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHH-VATLSGHSQEVCGLRWA 159
Query: 307 DDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLI------NVAGLLMSGS 360
DG L SG D + VW V H A+ + NV G+
Sbjct: 160 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLA-TGGGT 218
Query: 361 ADRTVRIWQRGSDGRFGCLAVLEGHTK 387
+DR +RIW S CL+ ++ H++
Sbjct: 219 SDRHIRIWNVCSG---ACLSAVDAHSQ 242
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 15/129 (11%)
Query: 306 SDDGTVLFSGACDRSILVW---DREDSANHMVVTGALRGHGKAI--LCLINVAGLLMSGS 360
++D VL SG+ D+++++W + E + + AL GH + L L +S S
Sbjct: 36 NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95
Query: 361 ADRTVRIWQRGSDGRFG-CLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ 419
D+T+R+W D R G GH V S+ + Q + S + EI+ W
Sbjct: 96 WDKTLRLW----DLRTGTTYKRFVGHQSEVYSVAFSPDNRQ-----ILSAGAEREIKLWN 146
Query: 420 VSVSCPNSS 428
+ C SS
Sbjct: 147 ILGECKFSS 155
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 67/170 (39%), Gaps = 58/170 (34%)
Query: 211 HGDAVTGLAVN--NGLIYSVSWDKSLKIWRASDLRCLESIK---AHEDAVNAVAVSAGG- 264
H V+ LA++ N S SWDK+L++W DLR + K H+ V +VA S
Sbjct: 75 HNHFVSDLALSQENCFAISSSWDKTLRLW---DLRTGTTYKRFVGHQSEVYSVAFSPDNR 131
Query: 265 TVYTGSADRKIRVW----------------------------------AKPFN------- 283
+ + A+R+I++W +PF
Sbjct: 132 QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVG 191
Query: 284 --------EKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD 325
+ T + H+S VN L++S +G + +G D+ +L+WD
Sbjct: 192 WDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWD 241
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 12/125 (9%)
Query: 268 TGSADRKIRVWAKPFNEKRHALIA----TLEKHKSAVNALALSDDGTVLFSGACDRSILV 323
+GS D+ + +W K + E+++ L H V+ LALS + S + D+++ +
Sbjct: 44 SGSRDKTVMIW-KLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRL 102
Query: 324 WDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAV 381
WD + GH + + ++S A+R +++W + +F A
Sbjct: 103 WDLRTGTTYK----RFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSS-AE 157
Query: 382 LEGHT 386
E H+
Sbjct: 158 KENHS 162
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/148 (22%), Positives = 65/148 (43%), Gaps = 11/148 (7%)
Query: 242 LRCLESIKAHEDAVNAVAVSA----GGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHK 297
++ +E + +D++ ++ S G + GS +R W + + + H
Sbjct: 29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWE--VQDSGQTIPKAQQMHT 86
Query: 298 SAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI--LCLINVAGL 355
V + SDDG+ +F+ +CD++ +WD S+N + K I + N +
Sbjct: 87 GPVLDVCWSDDGSKVFTASCDKTAKMWDL--SSNQAIQIAQHDAPVKTIHWIKAPNYS-C 143
Query: 356 LMSGSADRTVRIWQRGSDGRFGCLAVLE 383
+M+GS D+T++ W S L + E
Sbjct: 144 VMTGSWDKTLKFWDTRSSNPMMVLQLPE 171
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 231 DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGS--ADRKIRVWAKPFNEKRHA 288
D+ ++IW CL ++ AH + + + +G A ++ +W P K
Sbjct: 311 DRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK--- 367
Query: 289 LIATLEKHKSAVNALALSDDGTVLFSGACDRSILVW 324
+A L+ H S V +L +S DG + S A D ++ +W
Sbjct: 368 -VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 10/104 (9%)
Query: 290 IATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCL 349
+ATL H V L + DG L SG D + VW V H A+ +
Sbjct: 234 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 293
Query: 350 I------NVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTK 387
NV G++DR +RIW S CL+ ++ H++
Sbjct: 294 AWCPWQSNVLA-TGGGTSDRHIRIWNVCSG---ACLSAVDAHSQ 333
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 231 DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGS--ADRKIRVWAKPFNEKRHA 288
D+ ++IW CL ++ AH + + + +G A ++ +W P K
Sbjct: 300 DRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK--- 356
Query: 289 LIATLEKHKSAVNALALSDDGTVLFSGACDRSILVW 324
+A L+ H S V +L +S DG + S A D ++ +W
Sbjct: 357 -VAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 42/104 (40%), Gaps = 10/104 (9%)
Query: 290 IATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCL 349
+ATL H V L + DG L SG D + VW V H A+ +
Sbjct: 223 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAV 282
Query: 350 I------NVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTK 387
NV G++DR +RIW S CL+ ++ H++
Sbjct: 283 AWCPWQSNVLA-TGGGTSDRHIRIWNVCSG---ACLSAVDAHSQ 322
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 88/208 (42%), Gaps = 22/208 (10%)
Query: 225 IYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG-TVYTGSADRKIRVWAKPFN 283
I S S D L +W A + +IK H V A + G +V G D ++
Sbjct: 81 IVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQ 140
Query: 284 EKRHALIAT---LEKHKS-AVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGAL 339
R + L HK A + + D T L +G+ D++ ++WD + + + G+
Sbjct: 141 ADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVT-TGQRISIFGSE 199
Query: 340 --RGHGKAILCL-INV--AGLLMSGSADRTVRIWQRGSDGRFGCLAV--LEGHTKPVKSL 392
GH +L L IN A + +SGS D TVR+W D R AV GH + S+
Sbjct: 200 FPSGHTADVLSLSINSLNANMFISGSCDTTVRLW----DLRITSRAVRTYHGHEGDINSV 255
Query: 393 TAVTEEGQNGVVSVFSGSLDGEIRAWQV 420
+ + G +GS DG R + +
Sbjct: 256 KFFPDGQRFG-----TGSDDGTCRLFDM 278
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 15/161 (9%)
Query: 219 AVNNGLIYSVSWDKSLKIWRASDLR----CLESIKAHEDAVNAVAVSAGGTVY-TGSADR 273
++N + S S D ++++W DLR + + HE +N+V G + TGS D
Sbjct: 215 SLNANMFISGSCDTTVRLW---DLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDG 271
Query: 274 KIRVWAKPFNEKRHALIATLEKHKSA---VNALALSDDGTVLFSGACDRSILVWDREDSA 330
R++ + +++ + V ++A S G +LF+G + VWD A
Sbjct: 272 TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTL-LA 330
Query: 331 NHMVVTGALRG-HGKAILC--LINVAGLLMSGSADRTVRIW 368
++ G L+ H I C L + L +GS D+ ++IW
Sbjct: 331 EMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 60/159 (37%), Gaps = 38/159 (23%)
Query: 90 INSVQL---GHKLPIGCIAVHHNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVK 146
INSV+ G + G + H++ VY+R + ND+ V
Sbjct: 252 INSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREP---------DRNDNELPIVT 302
Query: 147 SVTF-CDGKI-FTAHQDCKIRVWQXXXXXXXXXXXXXXXVNDRLLRFMLPNSYVTVRRHK 204
SV F G++ F + + VW D LL M+ N H+
Sbjct: 303 SVAFSISGRLLFAGYSNGDCYVW------------------DTLLAEMVLNLGTLQNSHE 344
Query: 205 KKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLR 243
++ + GL+ + + + SWDK+LKIW S R
Sbjct: 345 GRI------SCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 99/239 (41%), Gaps = 65/239 (27%)
Query: 249 KAHEDAVNAVAVSAGG-----TVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNAL 303
+AH+DA+ +VA TV TGS D ++VW + ++R L +LE H+ V ++
Sbjct: 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVW--KWRDERLDLQWSLEGHQLGVVSV 86
Query: 304 ALSDDGTVLFSGACDRSILVWDREDSA--------------------NHMVVTG------ 337
+S + S + D I +WD E+ + + TG
Sbjct: 87 DISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKV 146
Query: 338 ------------ALRGHGKAILCLINV--AGLLMSGSADRTVRIWQRGSDGRFGCLAVLE 383
+L GK IL + L SG+ D + I+ + G+ L LE
Sbjct: 147 NIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT-GKL--LHTLE 203
Query: 384 GHTKPVKSLT------AVTEEGQNGVVSVF-------SGSLDGEIRAWQVSVS-CPNSS 428
GH P++SLT + +G + ++ +G+L G +W ++V+ CP+ +
Sbjct: 204 GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH-ASWVLNVAFCPDDT 261
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 336 TGALRGHGKAI--LCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLT 393
TG L GH I L + LL+S S D T+RIW G+ C GH++ + S +
Sbjct: 240 TGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY---GHSQSIVSAS 296
Query: 394 AVTEEGQNGVVSVFSGSLDGEIRAWQV 420
V ++ V S S+DG +R W +
Sbjct: 297 WVGDD------KVISCSMDGSVRLWSL 317
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 97/236 (41%), Gaps = 37/236 (15%)
Query: 231 DKSLKIW--RASDLRCLESIKAHEDAVNAVAVS---AGGTVYTGSADRKIRVWAKPFN-- 283
D+S+KI+ R + ++ HE V VA + G + + S DRK+ +W +
Sbjct: 34 DRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTW 93
Query: 284 EKRHALIATLEKHKSAVNAL--ALSDDGTVLFSGACDRSILV--------WDREDSANH- 332
EK H H S+VN++ A D G +L G+ D +I + W+ + N
Sbjct: 94 EKSHEHAG----HDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAH 149
Query: 333 -----------MVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAV 381
VV G+L H N SG D +++W+ DG++
Sbjct: 150 TIGCNAVSWAPAVVPGSLIDHPSGQK--PNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK 207
Query: 382 LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNS-SPLNLQKWN 436
LE H+ V+ + G ++ S S DG + W + N+ SP L K+N
Sbjct: 208 LEAHSDWVRDVAWAPSIGLP-TSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFN 262
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 80/202 (39%), Gaps = 31/202 (15%)
Query: 244 CLESIKAHEDAVNAVAVSA--GGTVYTGSADRKIRVWA------------KPFNEKRHAL 289
C ++ H + AV+ S + T SAD ++++W + +K A+
Sbjct: 178 CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAV 237
Query: 290 IATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCL 349
+ H VN L + DG L + D + +W+ + N +V G + + K L
Sbjct: 238 ESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKF 297
Query: 350 INVAG------LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGV 403
G + GS T+ ++ S + + +L+GH K V Q+
Sbjct: 298 TVSCGCSSEFVFVPYGS---TIAVYTVYSGEQ---ITMLKGHYKTVDCCVF-----QSNF 346
Query: 404 VSVFSGSLDGEIRAWQVSVSCP 425
++SGS D I AW S+ P
Sbjct: 347 QELYSGSRDCNILAWVPSLYEP 368
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 269 GSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRED 328
G+ + I+V FN +R A H S + L G L S + D + +W +D
Sbjct: 112 GTTEGDIKVLDSNFNLQREIDQA----HVSEITKLKFFPSGEALISSSQDMQLKIWSVKD 167
Query: 329 SANHMVVTGALRGHGKAI--LCLINVAGLLMSGSADRTVRIWQRGS 372
+N L GH + + +I+ ++S S D T+R+W+ G+
Sbjct: 168 GSNPR----TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT 209
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 12/66 (18%)
Query: 356 LMSGSADRTVRIW--QRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDG 413
L+S S D ++IW + GS+ R L GH V + A+ + G+N V S SLDG
Sbjct: 151 LISSSQDMQLKIWSVKDGSNPR-----TLIGHRATVTDI-AIIDRGRN----VLSASLDG 200
Query: 414 EIRAWQ 419
IR W+
Sbjct: 201 TIRLWE 206
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 262 AGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSI 321
+G + + S D ++++W+ LI H++ V +A+ D G + S + D +I
Sbjct: 147 SGEALISSSQDMQLKIWSVKDGSNPRTLIG----HRATVTDIAIIDRGRNVLSASLDGTI 202
Query: 322 LVWD 325
+W+
Sbjct: 203 RLWE 206
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 10/106 (9%)
Query: 269 GSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRED 328
G+ + I+V FN +R A H S + L G L S + D + +W +D
Sbjct: 115 GTTEGDIKVLDSNFNLQREIDQA----HVSEITKLKFFPSGEALISSSQDMQLKIWSVKD 170
Query: 329 SANHMVVTGALRGHGKAI--LCLINVAGLLMSGSADRTVRIWQRGS 372
+N L GH + + +I+ ++S S D T+R+W+ G+
Sbjct: 171 GSNPR----TLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT 212
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 12/66 (18%)
Query: 356 LMSGSADRTVRIW--QRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDG 413
L+S S D ++IW + GS+ R L GH V + A+ + G+N V S SLDG
Sbjct: 154 LISSSQDMQLKIWSVKDGSNPR-----TLIGHRATVTDI-AIIDRGRN----VLSASLDG 203
Query: 414 EIRAWQ 419
IR W+
Sbjct: 204 TIRLWE 209
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 262 AGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSI 321
+G + + S D ++++W+ LI H++ V +A+ D G + S + D +I
Sbjct: 150 SGEALISSSQDMQLKIWSVKDGSNPRTLIG----HRATVTDIAIIDRGRNVLSASLDGTI 205
Query: 322 LVWD 325
+W+
Sbjct: 206 RLWE 209
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 92/216 (42%), Gaps = 33/216 (15%)
Query: 231 DKSLKIWRASDLRCLESIKAHEDAVNAV---AVSAGGTVYTGSADRKIRVWAK-PFNE-- 284
DK W SD S +AH+ ++ A+ + G + + S D+ +++W + P E
Sbjct: 41 DKDTSNWELSD-----SWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEEC 95
Query: 285 --KRHALIATLEKHKSAVNAL------------ALSDDGTVLFSGACDRSIL-VWDREDS 329
+R + TL K ++ ++ L +DG + A + S L W
Sbjct: 96 SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSE 155
Query: 330 ANHMVVTGALRGHGKAILCLI----NVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGH 385
+ + A H ++ CL + ++ SA I+QRG DG+ A L GH
Sbjct: 156 XKVLSIPPA--NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGH 213
Query: 386 TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
++S++ G+ + + +G DG IR ++++
Sbjct: 214 KSLIRSISWAPSIGRWYQL-IATGCKDGRIRIFKIT 248
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 15/181 (8%)
Query: 218 LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRV 277
+A NG I S+S D +L + L++I H + A+ V+ + +GS D +I
Sbjct: 305 VATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP---LISGSYDGRIXE 361
Query: 278 WAKPFNEKRHA-LIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVT 336
W+ + H+ LI +L+ K A ++S D T+ +G + SAN+ T
Sbjct: 362 WSSSSXHQDHSNLIVSLDNSK-AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFT 420
Query: 337 GALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGS----DGRFGCLAVLEGHTKPVKSL 392
L + +L L + G ++ ++VR+ GS + + + EG+T V L
Sbjct: 421 AVLT-NDDDLLILQSFTGDII-----KSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKL 474
Query: 393 T 393
+
Sbjct: 475 S 475
Score = 35.4 bits (80), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 65/161 (40%), Gaps = 20/161 (12%)
Query: 262 AGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNA--LALS-DDGTVLFSGACD 318
+G V T +DRKI F+ K + +E + V ALS D + D
Sbjct: 218 SGEFVITVGSDRKISC----FDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD 273
Query: 319 RSILVWDREDSANHMVVTGALRGHGKAILCLINVA-GLLMSGSADRTVRIWQRGSDGRFG 377
+I VWD S T + G + ++ G ++S S D T+ ++ G D
Sbjct: 274 ATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDE--- 330
Query: 378 CLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAW 418
L + GH K + +LT V + SGS DG I W
Sbjct: 331 VLKTISGHNKGITALT---------VNPLISGSYDGRIXEW 362
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 92/216 (42%), Gaps = 33/216 (15%)
Query: 231 DKSLKIWRASDLRCLESIKAHEDAVNAV---AVSAGGTVYTGSADRKIRVWAK-PFNE-- 284
DK W SD S +AH+ ++ A+ + G + + S D+ +++W + P E
Sbjct: 41 DKDTSNWELSD-----SWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEEC 95
Query: 285 --KRHALIATLEKHKSAVNAL------------ALSDDGTVLFSGACDRSIL-VWDREDS 329
+R + TL K ++ ++ L +DG + A + S L W
Sbjct: 96 SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSE 155
Query: 330 ANHMVVTGALRGHGKAILCLI----NVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGH 385
+ + A H ++ CL + ++ SA I+QRG DG+ A L GH
Sbjct: 156 MKVLSIPPA--NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGH 213
Query: 386 TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
++S++ G+ + + +G DG IR ++++
Sbjct: 214 KSLIRSISWAPSIGRWYQL-IATGCKDGRIRIFKIT 248
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 92/216 (42%), Gaps = 33/216 (15%)
Query: 231 DKSLKIWRASDLRCLESIKAHEDAVNAV---AVSAGGTVYTGSADRKIRVWAK-PFNE-- 284
DK W SD S +AH+ ++ A+ + G + + S D+ +++W + P E
Sbjct: 39 DKDTSNWELSD-----SWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEEC 93
Query: 285 --KRHALIATLEKHKSAVNAL------------ALSDDGTVLFSGACDRSIL-VWDREDS 329
+R + TL K ++ ++ L +DG + A + S L W
Sbjct: 94 SGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSE 153
Query: 330 ANHMVVTGALRGHGKAILCLI----NVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGH 385
+ + A H ++ CL + ++ SA I+QRG DG+ A L GH
Sbjct: 154 MKVLSIPPA--NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGH 211
Query: 386 TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
++S++ G+ + + +G DG IR ++++
Sbjct: 212 KSLIRSISWAPSIGRWYQL-IATGCKDGRIRIFKIT 246
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 15/181 (8%)
Query: 218 LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRV 277
+A NG I S+S D +L + L++I H + A+ V+ + +GS D +I
Sbjct: 305 VATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNP---LISGSYDGRIME 361
Query: 278 WAKPFNEKRHA-LIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVT 336
W+ + H+ LI +L+ K A ++S D T+ +G + SAN+ T
Sbjct: 362 WSSSSMHQDHSNLIVSLDNSK-AQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFT 420
Query: 337 GALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGS----DGRFGCLAVLEGHTKPVKSL 392
L + +L L + G ++ ++VR+ GS + + + EG+T V L
Sbjct: 421 AVLT-NDDDLLILQSFTGDII-----KSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKL 474
Query: 393 T 393
+
Sbjct: 475 S 475
Score = 35.4 bits (80), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 65/161 (40%), Gaps = 14/161 (8%)
Query: 262 AGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSI 321
+G V T +DRKI + E + E + + AL+ D GA D +I
Sbjct: 218 SGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGA-DATI 276
Query: 322 LVWDREDSANHMVVTGALRGHGKAILCLINVA-GLLMSGSADRTVRIWQRGSDGRFGCLA 380
VWD S T + G + ++ G ++S S D T+ ++ G D L
Sbjct: 277 RVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDE---VLK 333
Query: 381 VLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421
+ GH K + +LT V + SGS DG I W S
Sbjct: 334 TISGHNKGITALT---------VNPLISGSYDGRIMEWSSS 365
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 81/203 (39%), Gaps = 31/203 (15%)
Query: 198 VTVRRHK----KKLWIEHGDAVTGLA---VNNGLIYSVSWDKSLKIWRASD---LRCLES 247
T + H+ K ++ H V +A ++ L SV+ D+ L IW + + +
Sbjct: 213 ATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT 272
Query: 248 IKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWA-KPFNEKRHALIATLEKHKSAVNALA 304
+ AH VN ++ + + TGSAD+ + +W + K H + E HK + +
Sbjct: 273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH----SFESHKDEIFQVQ 328
Query: 305 LSD-DGTVLFSGACDRSILVWDREDSANHMVVTGALRG-------HGKAILCL------I 350
S + T+L S DR + VWD A G HG +
Sbjct: 329 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP 388
Query: 351 NVAGLLMSGSADRTVRIWQRGSD 373
N ++ S S D +++WQ +
Sbjct: 389 NEPWIICSVSEDNIMQVWQMAEN 411
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 264 GTVYTGSADRKIRVWAKPFNEKRHALIAT---LEKHKSAVNALALSDDGTVLF-SGACDR 319
G + + S D I +W K H +I H + V +A LF S A D+
Sbjct: 195 GYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ 254
Query: 320 SILVWDREDSANHMVVTGALRGHGKAILCL-INVAG--LLMSGSADRTVRIW 368
+++WD ++ N + + H + CL N +L +GSAD+TV +W
Sbjct: 255 KLMIWDTRNN-NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 305
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 80/199 (40%), Gaps = 31/199 (15%)
Query: 198 VTVRRHK----KKLWIEHGDAVTGLA---VNNGLIYSVSWDKSLKIWRASD---LRCLES 247
T + H+ K ++ H V +A ++ L SV+ D+ L IW + + +
Sbjct: 215 ATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT 274
Query: 248 IKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWA-KPFNEKRHALIATLEKHKSAVNALA 304
+ AH VN ++ + + TGSAD+ + +W + K H + E HK + +
Sbjct: 275 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH----SFESHKDEIFQVQ 330
Query: 305 LSD-DGTVLFSGACDRSILVWDREDSANHMVVTGALRG-------HGKAILCL------I 350
S + T+L S DR + VWD A G HG +
Sbjct: 331 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP 390
Query: 351 NVAGLLMSGSADRTVRIWQ 369
N ++ S S D +++WQ
Sbjct: 391 NEPWIICSVSEDNIMQVWQ 409
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 264 GTVYTGSADRKIRVWAKPFNEKRHALIAT---LEKHKSAVNALALSDDGTVLF-SGACDR 319
G + + S D I +W K H +I H + V +A LF S A D+
Sbjct: 197 GYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ 256
Query: 320 SILVWDREDSANHMVVTGALRGHGKAILCL-INVAG--LLMSGSADRTVRIW 368
+++WD ++ N + + H + CL N +L +GSAD+TV +W
Sbjct: 257 KLMIWDTRNN-NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 307
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 80/199 (40%), Gaps = 31/199 (15%)
Query: 198 VTVRRHK----KKLWIEHGDAVTGLA---VNNGLIYSVSWDKSLKIWRASD---LRCLES 247
T + H+ K ++ H V +A ++ L SV+ D+ L IW + + +
Sbjct: 217 ATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT 276
Query: 248 IKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWA-KPFNEKRHALIATLEKHKSAVNALA 304
+ AH VN ++ + + TGSAD+ + +W + K H + E HK + +
Sbjct: 277 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLH----SFESHKDEIFQVQ 332
Query: 305 LSD-DGTVLFSGACDRSILVWDREDSANHMVVTGALRG-------HGKAILCL------I 350
S + T+L S DR + VWD A G HG +
Sbjct: 333 WSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNP 392
Query: 351 NVAGLLMSGSADRTVRIWQ 369
N ++ S S D +++WQ
Sbjct: 393 NEPWIICSVSEDNIMQVWQ 411
Score = 32.0 bits (71), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 264 GTVYTGSADRKIRVWAKPFNEKRHALIAT---LEKHKSAVNALALSDDGTVLF-SGACDR 319
G + + S D I +W K H +I H + V +A LF S A D+
Sbjct: 199 GYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ 258
Query: 320 SILVWDREDSANHMVVTGALRGHGKAILCL-INVAG--LLMSGSADRTVRIW 368
+++WD ++ N + + H + CL N +L +GSAD+TV +W
Sbjct: 259 KLMIWDTRNN-NTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALW 309
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 11/113 (9%)
Query: 220 VNNGLIYSVSWDKSLKIW--RASDL-RCLESIKAHEDAVNAVAVSAGGT--VYTGSADRK 274
++ L SV+ D+ L IW R+++ + S+ AH VN ++ + + TGSAD+
Sbjct: 238 LHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKT 297
Query: 275 IRVWA-KPFNEKRHALIATLEKHKSAVNALALSD-DGTVLFSGACDRSILVWD 325
+ +W + K H + E HK + + S + T+L S DR + VWD
Sbjct: 298 VALWDLRNLKLKLH----SFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 310 TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCL-INVAG--LLMSGSADRTVR 366
++ S A D+ +++WD S N + ++ H + CL N +L +GSAD+TV
Sbjct: 241 SLFGSVADDQKLMIWDTR-SNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299
Query: 367 IW 368
+W
Sbjct: 300 LW 301
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 76/192 (39%), Gaps = 27/192 (14%)
Query: 205 KKLWIEHGDAVTGLA---VNNGLIYSVSWDKSLKIWRA---SDLRCLESIKAHEDAVNAV 258
K ++ H V +A ++ L SV+ D+ L IW + + + AH VN +
Sbjct: 222 KAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCL 281
Query: 259 AVSAGGT--VYTGSADRKIRVWA-KPFNEKRHALIATLEKHKSAVNALALSD-DGTVLFS 314
+ + + TGSAD+ + +W + K H T E HK + + S + T+L S
Sbjct: 282 SFNPYSEFILATGSADKTVALWDLRNLKLKLH----TFESHKDEIFQVHWSPHNETILAS 337
Query: 315 GACDRSILVWDREDSANHMVVTGALRG-------HGKAILCL------INVAGLLMSGSA 361
DR + VWD A G HG + N ++ S S
Sbjct: 338 SGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE 397
Query: 362 DRTVRIWQRGSD 373
D ++IWQ +
Sbjct: 398 DNIMQIWQMAEN 409
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 339 LRGHGKAILCLI---NVAGLLMSGSADRTVRIWQRGSDGRFGCL----AVLEGHTKPVKS 391
LRGH K L N++G L+S S D TV +W + + G + A+ GH+ V+
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 392 L 392
+
Sbjct: 235 V 235
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Query: 209 IEHGDAVTGL--AVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTV 266
+ H +V GL + + I S S DK++KIW + L+ ++I + G +
Sbjct: 236 VAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG----TRIEDQQLGII 291
Query: 267 YTGSADRKIRVWAKPFNEKRHALIATLEK----HKSAVNALALSDDGTVLFSGACDRSIL 322
+T A + + A F + + ++++ H A+ AL+ S DG LFS + I
Sbjct: 292 WTKQA--LVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHIN 349
Query: 323 VWD 325
WD
Sbjct: 350 SWD 352
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 87/207 (42%), Gaps = 15/207 (7%)
Query: 225 IYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNE 284
I S S D ++ I+ + + H V++V + G+++ + V +
Sbjct: 163 IISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 222
Query: 285 KRHALIA--TLEK--HKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALR 340
+ + +L+ H +V L S DGT + S + D++I +W+ + R
Sbjct: 223 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR 282
Query: 341 GHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCL-AVLEGHTKPVKSLTAVTEEG 399
+ L +I L+S SA+ + + G + V GH K + +L++ + +G
Sbjct: 283 IEDQQ-LGIIWTKQALVSISANGFINF----VNPELGSIDQVRYGHNKAITALSS-SADG 336
Query: 400 QNGVVSVFSGSLDGEIRAWQVSVSCPN 426
+ ++FS +G I +W +S N
Sbjct: 337 K----TLFSADAEGHINSWDISTGISN 359
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Query: 290 IATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCL 349
I TL+ H S V LA DG L SG D + +WD S T KA+
Sbjct: 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNH-NAAVKAVAWC 268
Query: 350 INVAGLLMS--GSADRTVRIWQRGSDGRFGCL 379
+ LL + G+ D+ + W + R +
Sbjct: 269 PWQSNLLATGGGTMDKQIHFWNAATGARVNTV 300
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 75/192 (39%), Gaps = 27/192 (14%)
Query: 205 KKLWIEHGDAVTGLA---VNNGLIYSVSWDKSLKIWRA---SDLRCLESIKAHEDAVNAV 258
K ++ H V +A ++ L SV+ D+ L IW + + + AH VN +
Sbjct: 222 KAIFTGHSAVVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCL 281
Query: 259 AVSAGGT--VYTGSADRKIRVWA-KPFNEKRHALIATLEKHKSAVNALALSD-DGTVLFS 314
+ + + TGSAD+ + +W + K H T E HK + + S + T+L S
Sbjct: 282 SFNPYSEFILATGSADKTVALWDLRNLKLKLH----TFESHKDEIFQVHWSPHNETILAS 337
Query: 315 GACDRSILVWDREDSANHMVVTGALRG-------HGKAILCL------INVAGLLMSGSA 361
DR + VWD A G HG + N ++ S S
Sbjct: 338 SGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSE 397
Query: 362 DRTVRIWQRGSD 373
D +IWQ +
Sbjct: 398 DNIXQIWQXAEN 409
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 339 LRGHGKAILCLI---NVAGLLMSGSADRTVRIWQRGSDGRFGCL----AVLEGHTKPVKS 391
LRGH K L N++G L+S S D TV +W + + G + A+ GH+ V+
Sbjct: 175 LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVED 234
Query: 392 L 392
+
Sbjct: 235 V 235
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 12/131 (9%)
Query: 244 CLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEK--HKSAVN 301
C ++ + VS G + S + +W EK L+ K H V
Sbjct: 87 CTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWE--ILEKESLLVNKFAKYEHDDIVK 143
Query: 302 ALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMS 358
L++ DGT SG D S+ VWD A V + H + C+ G + +S
Sbjct: 144 TLSVFSDGTQAVSGGKDFSVKVWDLSQKA----VLKSYNAHSSEVNCVAACPGKDTIFLS 199
Query: 359 GSADRTVRIWQ 369
D + +W
Sbjct: 200 CGEDGRILLWD 210
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 266 VYTGSADRKIRVWAKPFNEKRHAL---IATLEKHKSAVNALALSDDG-TVLFSGACDRSI 321
+ +GS D + VW P L + TLE H V +A VL S CD I
Sbjct: 97 IASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVI 156
Query: 322 LVWD 325
LVWD
Sbjct: 157 LVWD 160
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 39/196 (19%), Positives = 78/196 (39%), Gaps = 37/196 (18%)
Query: 142 SGSVKSVTFC---DGKIFTAHQDCKIRVWQXXXXXXXXXXXXXXXVNDRLLRFMLPNSYV 198
+ V + +C D I + +DC + VW+ + D L L +
Sbjct: 81 TAPVLDIAWCPHNDNVIASGSEDCTVMVWE---------------IPDGGLVLPLREPVI 125
Query: 199 TVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESI--KAHEDAVN 256
T+ H K++ I V ++ S D + +W + ++ H D +
Sbjct: 126 TLEGHTKRVGI-----VAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIY 180
Query: 257 AVAVSA-GGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSA---VNALALSDDGTVL 312
+V S G + T D+++RV ++ ++A ++ V+A+ +S +G +L
Sbjct: 181 SVDWSRDGALICTSCRDKRVRV----IEPRKGTVVAEKDRPHEGTRPVHAVFVS-EGKIL 235
Query: 313 ---FSGACDRSILVWD 325
FS +R + +WD
Sbjct: 236 TTGFSRMSERQVALWD 251
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 20/185 (10%)
Query: 250 AHEDAV-NAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNAL--ALS 306
AH + + +AV G + T S+D+ I+++ + H LI TL H+ V + A
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFE--VEGETHKLIDTLTGHEGPVWRVDWAHP 64
Query: 307 DDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLI----NVAGLLMSGSAD 362
GT+L S + D +L+W E+ + A+ H ++ + LL+ S+D
Sbjct: 65 KFGTILASCSYDGKVLIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPLLLVASSD 122
Query: 363 RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLT----AVTEEGQ-NGVVS---VFSGSLDGE 414
V + + +G + +++ H V S + + E+G+ NG +G D
Sbjct: 123 GKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181
Query: 415 IRAWQ 419
++ W+
Sbjct: 182 VKIWK 186
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLF-----SGACDRSIL 322
TG AD +++W + + + L +TLE H V +A S TVL S + DR+ +
Sbjct: 175 TGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS--PTVLLRSYLASVSQDRTCI 232
Query: 323 VWDREDS 329
+W +++
Sbjct: 233 IWTQDNE 239
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 20/185 (10%)
Query: 250 AHEDAV-NAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNAL--ALS 306
AH + + +AV G + T S+D+ I+++ + H LI TL H+ V + A
Sbjct: 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFE--VEGETHKLIDTLTGHEGPVWRVDWAHP 66
Query: 307 DDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLI----NVAGLLMSGSAD 362
GT+L S + D +L+W E+ + A+ H ++ + LL+ S+D
Sbjct: 67 KFGTILASCSYDGKVLIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPLLLVASSD 124
Query: 363 RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLT----AVTEEGQ-NGVVS---VFSGSLDGE 414
V + + +G + +++ H V S + + E+G+ NG +G D
Sbjct: 125 GKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 183
Query: 415 IRAWQ 419
++ W+
Sbjct: 184 VKIWK 188
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLF-----SGACDRSIL 322
TG AD +++W + + + L +TLE H V +A S TVL S + DR+ +
Sbjct: 177 TGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP--TVLLRSYLASVSQDRTCI 234
Query: 323 VWDRED 328
+W +++
Sbjct: 235 IWTQDN 240
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLF-----SGACDRSIL 322
TG AD +++W + + + L +TLE H V +A S TVL S + DR+ +
Sbjct: 175 TGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP--TVLLRSYMASVSQDRTCI 232
Query: 323 VWDREDS 329
+W +++
Sbjct: 233 IWTQDNE 239
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 250 AHEDAV-NAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNAL--ALS 306
AH + + +AV G + T S+D+ I+++ + H LI TL H+ V + A
Sbjct: 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFE--VEGETHKLIDTLTGHEGPVWRVDWAHP 64
Query: 307 DDGTVLFSGACDRSILVWDRED 328
GT+L S + D +++W E+
Sbjct: 65 KFGTILASCSYDGKVMIWKEEN 86
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLF-----SGACDRSIL 322
TG AD +++W + + + L +TLE H V +A S TVL S + DR+ +
Sbjct: 175 TGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP--TVLLRSYLASVSQDRTCI 232
Query: 323 VWDREDS 329
+W +++
Sbjct: 233 IWTQDNE 239
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 20/185 (10%)
Query: 250 AHEDAV-NAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNAL--ALS 306
AH + + +AV G + T S+D+ I+++ + H LI TL H+ V + A
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFE--VEGETHKLIDTLTGHEGPVWRVDWAHP 64
Query: 307 DDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLI----NVAGLLMSGSAD 362
GT+L S + D +L+W E+ + A+ H ++ + LL+ S+D
Sbjct: 65 KFGTILASCSYDGKVLIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPLLLVASSD 122
Query: 363 RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLT----AVTEEGQ-NGVVS---VFSGSLDGE 414
V + + +G + +++ H V S + + E+G+ NG +G D
Sbjct: 123 GKVSVVEFKENGTTSPI-IIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNL 181
Query: 415 IRAWQ 419
++ W+
Sbjct: 182 VKIWK 186
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 7/66 (10%)
Query: 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLF-----SGACDRSIL 322
TG AD +++W + + + L +TLE H V +A S TVL S + DR+ +
Sbjct: 175 TGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP--TVLLRSYXASVSQDRTCI 232
Query: 323 VWDRED 328
+W +++
Sbjct: 233 IWTQDN 238
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 250 AHEDAV-NAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNAL--ALS 306
AH + + +AV G T S+D+ I+++ + H LI TL H+ V + A
Sbjct: 7 AHNEXIHDAVXDYYGKRXATCSSDKTIKIFE--VEGETHKLIDTLTGHEGPVWRVDWAHP 64
Query: 307 DDGTVLFSGACDRSILVWDRED 328
GT+L S + D + +W E+
Sbjct: 65 KFGTILASCSYDGKVXIWKEEN 86
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 11/116 (9%)
Query: 295 KHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA- 353
+H V+ +++ GT SG+ D I VWD VV + R H + C+
Sbjct: 125 EHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA----QQVVLSSYRAHAAQVTCVAASPH 180
Query: 354 --GLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVF 407
+ +S S D + +W D R A G + P T++ Q V VF
Sbjct: 181 KDSVFLSCSEDNRILLW----DTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVF 232
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 210 EHGDAVTGLAVNNGLIYSVSWDK--SLKIWRASDLRCLESIKAHEDAVNAVAVSA--GGT 265
EH D V+ ++V + +VS K +K+W + L S +AH V VA S
Sbjct: 125 EHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV 184
Query: 266 VYTGSADRKIRVW 278
+ S D +I +W
Sbjct: 185 FLSCSEDNRILLW 197
>pdb|3DW8|B Chain B, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|E Chain E, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 447
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 21/103 (20%)
Query: 250 AHEDAVNAVAVSAGGTVYTGSADRKIRVW-------------AKPFN-EKRHALIATLEK 295
AH +N++++++ Y + D +I +W KP N E+ +I E
Sbjct: 175 AHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEF 234
Query: 296 HKSAVNALAL-SDDGTVLF-----SGACDR-SILVWDREDSAN 331
H ++ N S GT+ S CDR S L + ED +N
Sbjct: 235 HPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSN 277
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 287 HALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI 346
H L H+ + + + +G +LFS + D S VW + G L GH I
Sbjct: 22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER----LGTLDGHTGTI 77
Query: 347 --LCLINVAGLLMSGSADRTVRIW 368
+ + ++GSAD ++++W
Sbjct: 78 WSIDVDCFTKYCVTGSADYSIKLW 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,110,859
Number of Sequences: 62578
Number of extensions: 446032
Number of successful extensions: 1873
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1158
Number of HSP's gapped (non-prelim): 341
length of query: 437
length of database: 14,973,337
effective HSP length: 102
effective length of query: 335
effective length of database: 8,590,381
effective search space: 2877777635
effective search space used: 2877777635
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)