Query 013717
Match_columns 437
No_of_seqs 720 out of 3801
Neff 11.5
Searched_HMMs 46136
Date Fri Mar 29 06:41:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/013717.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/013717hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.9E-52 4E-57 343.8 26.3 313 58-419 117-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 2.6E-49 5.7E-54 325.3 25.9 293 86-427 102-445 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 2.1E-45 4.7E-50 306.0 22.6 273 96-419 173-458 (459)
4 KOG0286 G-protein beta subunit 100.0 4.8E-42 1E-46 273.0 31.3 285 92-419 48-343 (343)
5 KOG0315 G-protein beta subunit 100.0 4E-41 8.7E-46 261.8 29.3 286 69-395 11-309 (311)
6 KOG0272 U4/U6 small nuclear ri 100.0 2.3E-42 5E-47 287.9 21.4 267 59-369 178-458 (459)
7 KOG0279 G protein beta subunit 100.0 7.8E-40 1.7E-44 258.8 29.7 285 90-422 6-314 (315)
8 KOG0319 WD40-repeat-containing 100.0 2.2E-40 4.8E-45 294.3 29.3 352 59-427 108-583 (775)
9 KOG0315 G-protein beta subunit 100.0 2.4E-39 5.2E-44 251.9 27.3 276 109-428 11-295 (311)
10 KOG0318 WD40 repeat stress pro 100.0 4.6E-38 1E-42 269.3 37.0 349 57-421 148-602 (603)
11 KOG0285 Pleiotropic regulator 100.0 3.5E-39 7.5E-44 263.6 27.7 294 87-429 139-448 (460)
12 KOG0645 WD40 repeat protein [G 100.0 3.1E-38 6.8E-43 248.7 32.0 288 91-421 6-311 (312)
13 KOG0273 Beta-transducin family 100.0 1.3E-38 2.9E-43 269.1 28.3 298 92-436 172-502 (524)
14 KOG0281 Beta-TrCP (transducin 100.0 1.6E-40 3.5E-45 270.5 15.7 278 96-426 195-482 (499)
15 KOG0286 G-protein beta subunit 100.0 4.4E-38 9.6E-43 250.5 28.5 274 58-369 57-343 (343)
16 KOG0265 U5 snRNP-specific prot 100.0 4.4E-38 9.6E-43 251.4 26.0 284 90-420 38-337 (338)
17 KOG0281 Beta-TrCP (transducin 100.0 2.7E-39 5.9E-44 263.4 16.9 267 67-374 206-480 (499)
18 KOG0319 WD40-repeat-containing 100.0 1.1E-37 2.4E-42 277.2 27.7 314 61-422 286-620 (775)
19 KOG0291 WD40-repeat-containing 100.0 4.1E-36 8.9E-41 267.8 36.5 352 60-430 100-517 (893)
20 KOG0295 WD40 repeat-containing 100.0 1.7E-37 3.6E-42 254.3 24.6 302 69-420 77-405 (406)
21 KOG0279 G protein beta subunit 100.0 1.5E-36 3.3E-41 240.2 26.0 265 67-371 27-313 (315)
22 KOG0284 Polyadenylation factor 100.0 5.5E-38 1.2E-42 260.7 18.5 275 97-421 95-380 (464)
23 KOG0282 mRNA splicing factor [ 100.0 3.4E-38 7.4E-43 267.5 15.4 286 88-419 203-503 (503)
24 KOG0263 Transcription initiati 100.0 5.5E-37 1.2E-41 275.3 23.0 279 86-424 365-652 (707)
25 KOG0273 Beta-transducin family 100.0 1.9E-35 4.2E-40 250.0 29.8 305 64-421 186-523 (524)
26 KOG0313 Microtubule binding pr 100.0 1.6E-35 3.5E-40 244.0 28.1 295 81-421 88-418 (423)
27 KOG0318 WD40 repeat stress pro 100.0 9.1E-35 2E-39 249.2 33.7 321 61-425 64-564 (603)
28 KOG0293 WD40 repeat-containing 100.0 1.3E-36 2.9E-41 252.9 21.4 287 88-423 213-515 (519)
29 KOG0295 WD40 repeat-containing 100.0 4.7E-36 1E-40 245.8 23.8 268 60-370 112-405 (406)
30 KOG0296 Angio-associated migra 100.0 3.9E-35 8.4E-40 240.6 29.0 317 52-421 60-398 (399)
31 KOG0266 WD40 repeat-containing 100.0 4.7E-35 1E-39 269.7 30.9 283 92-421 151-454 (456)
32 KOG0306 WD40-repeat-containing 100.0 1.3E-34 2.9E-39 258.1 31.2 343 61-422 70-623 (888)
33 KOG0265 U5 snRNP-specific prot 100.0 8.9E-35 1.9E-39 232.6 26.3 269 60-368 51-335 (338)
34 KOG0316 Conserved WD40 repeat- 100.0 7.1E-35 1.5E-39 225.3 24.1 276 90-420 8-298 (307)
35 cd00200 WD40 WD40 domain, foun 100.0 9.6E-34 2.1E-38 249.2 34.5 275 94-419 4-289 (289)
36 KOG0285 Pleiotropic regulator 100.0 1.5E-35 3.2E-40 242.5 21.0 239 139-425 148-393 (460)
37 KOG0645 WD40 repeat protein [G 100.0 2.4E-34 5.3E-39 226.9 26.9 272 60-371 18-311 (312)
38 KOG0284 Polyadenylation factor 100.0 2.5E-36 5.4E-41 250.9 15.4 271 60-372 100-381 (464)
39 KOG0291 WD40-repeat-containing 100.0 1.3E-33 2.9E-38 251.9 32.9 318 61-427 270-618 (893)
40 KOG0274 Cdc4 and related F-box 100.0 5.8E-34 1.3E-38 261.2 29.7 278 96-427 206-488 (537)
41 KOG0263 Transcription initiati 100.0 3E-34 6.5E-39 257.8 25.8 231 60-329 382-651 (707)
42 PLN00181 protein SPA1-RELATED; 100.0 6.1E-33 1.3E-37 274.7 37.7 300 77-420 457-792 (793)
43 KOG0306 WD40-repeat-containing 100.0 3.2E-33 6.9E-38 249.4 29.1 294 75-422 341-665 (888)
44 KOG0292 Vesicle coat complex C 100.0 2.6E-33 5.6E-38 254.1 28.2 319 58-423 11-399 (1202)
45 KOG0313 Microtubule binding pr 100.0 2.5E-33 5.4E-38 231.1 25.6 291 68-371 115-418 (423)
46 KOG0276 Vesicle coat complex C 100.0 3E-33 6.6E-38 244.6 26.1 266 59-367 16-295 (794)
47 KOG0277 Peroxisomal targeting 100.0 1.9E-33 4.2E-38 219.7 21.9 273 102-420 12-308 (311)
48 KOG0276 Vesicle coat complex C 100.0 9.2E-34 2E-38 247.8 21.7 241 139-424 10-260 (794)
49 KOG0292 Vesicle coat complex C 100.0 1E-32 2.2E-37 250.3 27.3 284 96-425 7-325 (1202)
50 KOG0643 Translation initiation 100.0 3.8E-33 8.3E-38 219.7 20.7 276 96-423 8-319 (327)
51 KOG0274 Cdc4 and related F-box 100.0 1.3E-32 2.9E-37 252.3 26.8 269 68-382 218-490 (537)
52 KOG0296 Angio-associated migra 100.0 4.1E-32 9E-37 222.9 25.8 285 92-425 57-360 (399)
53 KOG0282 mRNA splicing factor [ 100.0 1.5E-33 3.2E-38 239.5 16.7 269 60-369 218-503 (503)
54 KOG0316 Conserved WD40 repeat- 100.0 3.9E-32 8.5E-37 210.2 21.0 243 139-425 14-261 (307)
55 KOG0278 Serine/threonine kinas 100.0 8.4E-33 1.8E-37 215.7 17.3 276 96-426 12-302 (334)
56 KOG0266 WD40 repeat-containing 100.0 2E-31 4.4E-36 245.7 28.4 270 60-371 163-454 (456)
57 KOG0294 WD40 repeat-containing 100.0 1.4E-30 3E-35 210.1 27.8 268 111-425 4-285 (362)
58 KOG1446 Histone H3 (Lys4) meth 100.0 1.1E-29 2.3E-34 205.5 32.0 284 93-423 8-305 (311)
59 PLN00181 protein SPA1-RELATED; 100.0 3.6E-30 7.8E-35 255.0 36.0 275 60-370 487-792 (793)
60 KOG0772 Uncharacterized conser 100.0 9.2E-31 2E-35 224.2 26.3 298 93-419 161-485 (641)
61 KOG0283 WD40 repeat-containing 100.0 4.6E-31 9.9E-36 239.4 25.6 270 140-424 265-579 (712)
62 KOG0640 mRNA cleavage stimulat 100.0 3.6E-31 7.7E-36 213.0 22.1 289 91-421 104-426 (430)
63 KOG0268 Sof1-like rRNA process 100.0 2.3E-32 5.1E-37 224.1 15.5 283 89-425 56-349 (433)
64 KOG0301 Phospholipase A2-activ 100.0 1.1E-30 2.4E-35 231.4 27.1 277 89-423 4-290 (745)
65 KOG0305 Anaphase promoting com 100.0 2.1E-30 4.5E-35 229.1 27.6 271 104-425 183-465 (484)
66 KOG0275 Conserved WD40 repeat- 100.0 4.1E-32 8.9E-37 219.8 15.4 282 96-419 211-507 (508)
67 KOG0277 Peroxisomal targeting 100.0 6.3E-31 1.4E-35 205.8 20.7 270 61-370 13-308 (311)
68 cd00200 WD40 WD40 domain, foun 100.0 1.8E-29 3.9E-34 222.0 32.2 268 59-369 12-289 (289)
69 KOG0293 WD40 repeat-containing 100.0 1.1E-30 2.4E-35 217.8 22.5 272 58-372 226-514 (519)
70 KOG1408 WD40 repeat protein [F 100.0 4.1E-30 8.8E-35 228.5 27.2 323 60-422 328-714 (1080)
71 KOG1407 WD40 repeat protein [F 100.0 6.4E-30 1.4E-34 200.9 25.0 274 96-421 18-311 (313)
72 KOG0289 mRNA splicing factor [ 100.0 1.1E-29 2.3E-34 213.3 26.8 274 99-420 220-505 (506)
73 KOG0300 WD40 repeat-containing 100.0 2.2E-30 4.7E-35 209.2 21.4 320 89-424 138-479 (481)
74 KOG0288 WD40 repeat protein Ti 100.0 4.2E-31 9.1E-36 220.3 16.6 281 91-419 167-459 (459)
75 KOG2106 Uncharacterized conser 100.0 1.5E-27 3.3E-32 204.1 37.8 339 60-420 204-625 (626)
76 KOG0641 WD40 repeat protein [G 100.0 5.6E-28 1.2E-32 186.3 30.9 299 89-421 23-349 (350)
77 KOG0283 WD40 repeat-containing 100.0 6.8E-30 1.5E-34 231.9 23.7 245 96-372 265-577 (712)
78 KOG4283 Transcription-coupled 100.0 3.1E-29 6.7E-34 200.5 24.0 286 96-421 41-365 (397)
79 KOG0288 WD40 repeat protein Ti 100.0 4.4E-30 9.5E-35 214.3 17.2 270 60-368 179-458 (459)
80 PTZ00421 coronin; Provisional 100.0 9.4E-28 2E-32 220.3 34.1 261 106-398 30-315 (493)
81 KOG0264 Nucleosome remodeling 100.0 4.3E-29 9.4E-34 211.1 22.6 255 140-423 122-406 (422)
82 KOG0308 Conserved WD40 repeat- 100.0 2.6E-29 5.7E-34 221.1 21.9 323 66-425 35-397 (735)
83 KOG0310 Conserved WD40 repeat- 100.0 1.5E-28 3.2E-33 209.5 25.7 276 96-423 24-311 (487)
84 KOG0294 WD40 repeat-containing 100.0 2.9E-28 6.3E-33 196.7 25.5 257 92-396 36-307 (362)
85 KOG0647 mRNA export protein (c 100.0 3E-28 6.6E-33 195.5 24.9 269 96-412 25-315 (347)
86 KOG0772 Uncharacterized conser 100.0 1.9E-28 4.1E-33 210.1 22.8 278 60-369 171-485 (641)
87 KOG0308 Conserved WD40 repeat- 100.0 4.4E-29 9.4E-34 219.7 19.2 283 97-423 20-329 (735)
88 KOG2096 WD40 repeat protein [G 100.0 8E-28 1.7E-32 194.5 24.9 298 93-419 80-400 (420)
89 KOG1036 Mitotic spindle checkp 100.0 1.2E-27 2.6E-32 192.7 25.2 266 96-410 11-293 (323)
90 KOG0299 U3 snoRNP-associated p 100.0 1.1E-27 2.4E-32 202.7 26.2 290 92-422 135-457 (479)
91 KOG0264 Nucleosome remodeling 100.0 1.8E-28 3.9E-33 207.4 21.1 254 93-372 119-405 (422)
92 KOG1332 Vesicle coat complex C 100.0 6.6E-29 1.4E-33 193.4 16.8 248 140-422 9-287 (299)
93 PTZ00420 coronin; Provisional 100.0 1.1E-26 2.5E-31 214.1 34.7 249 114-398 50-318 (568)
94 PTZ00420 coronin; Provisional 100.0 5.3E-27 1.1E-31 216.3 32.0 200 209-424 71-296 (568)
95 KOG0278 Serine/threonine kinas 100.0 6.2E-29 1.3E-33 194.2 16.2 266 65-375 26-301 (334)
96 KOG0275 Conserved WD40 repeat- 100.0 6.8E-29 1.5E-33 201.2 16.0 267 60-369 217-507 (508)
97 PTZ00421 coronin; Provisional 100.0 9.6E-27 2.1E-31 213.7 32.0 253 141-425 19-294 (493)
98 KOG0641 WD40 repeat protein [G 100.0 1.8E-26 3.8E-31 178.0 28.2 278 60-371 36-349 (350)
99 KOG0639 Transducin-like enhanc 100.0 3.2E-27 7E-32 202.1 25.6 284 90-421 411-704 (705)
100 KOG0268 Sof1-like rRNA process 100.0 9.3E-29 2E-33 203.1 15.5 268 60-374 70-348 (433)
101 KOG1332 Vesicle coat complex C 100.0 5.2E-28 1.1E-32 188.4 18.6 251 96-380 9-295 (299)
102 KOG1407 WD40 repeat protein [F 100.0 5.7E-27 1.2E-31 184.4 24.2 261 56-362 20-293 (313)
103 KOG0301 Phospholipase A2-activ 100.0 1.5E-27 3.3E-32 211.6 23.6 253 70-372 27-289 (745)
104 KOG0305 Anaphase promoting com 100.0 4.8E-27 1E-31 207.9 26.8 264 67-373 186-463 (484)
105 KOG0269 WD40 repeat-containing 100.0 3.5E-28 7.6E-33 218.1 19.5 286 99-423 40-342 (839)
106 KOG0973 Histone transcription 100.0 5.3E-27 1.1E-31 218.7 26.5 302 96-425 11-359 (942)
107 KOG0310 Conserved WD40 repeat- 100.0 3.3E-27 7.2E-32 201.4 23.0 269 59-372 29-310 (487)
108 KOG0647 mRNA export protein (c 100.0 8E-27 1.7E-31 187.3 23.3 254 58-354 29-304 (347)
109 KOG1036 Mitotic spindle checkp 100.0 1.4E-26 3.1E-31 186.6 24.6 260 60-361 17-294 (323)
110 KOG0300 WD40 repeat-containing 100.0 1.7E-27 3.7E-32 192.6 19.0 277 62-373 154-478 (481)
111 KOG2445 Nuclear pore complex c 100.0 2.2E-26 4.8E-31 185.3 24.7 274 96-395 11-341 (361)
112 KOG2445 Nuclear pore complex c 100.0 7.7E-26 1.7E-30 182.2 25.6 252 139-422 10-319 (361)
113 KOG0289 mRNA splicing factor [ 100.0 6.4E-26 1.4E-30 190.7 24.5 270 61-370 224-505 (506)
114 KOG1539 WD repeat protein [Gen 100.0 8.7E-26 1.9E-30 204.5 27.1 318 67-425 171-610 (910)
115 KOG0299 U3 snoRNP-associated p 100.0 3.1E-26 6.7E-31 194.0 22.6 263 139-430 139-419 (479)
116 KOG1446 Histone H3 (Lys4) meth 100.0 6.1E-25 1.3E-29 178.1 29.0 271 57-372 15-304 (311)
117 KOG1063 RNA polymerase II elon 100.0 7.1E-26 1.5E-30 201.0 25.3 360 61-421 321-763 (764)
118 KOG0640 mRNA cleavage stimulat 100.0 4.8E-26 1E-30 183.6 22.1 274 60-371 116-426 (430)
119 KOG0321 WD40 repeat-containing 100.0 1.4E-26 3E-31 203.7 20.6 281 108-424 64-394 (720)
120 KOG2106 Uncharacterized conser 99.9 2.8E-24 6E-29 184.3 32.8 310 74-435 176-534 (626)
121 KOG1539 WD repeat protein [Gen 99.9 7.6E-25 1.6E-29 198.4 31.0 336 61-419 207-646 (910)
122 KOG0973 Histone transcription 99.9 1.1E-25 2.5E-30 209.9 25.3 275 59-373 16-357 (942)
123 KOG0650 WD40 repeat nucleolar 99.9 1.2E-25 2.7E-30 196.3 23.3 307 91-418 392-732 (733)
124 KOG1408 WD40 repeat protein [F 99.9 1.9E-25 4.1E-30 199.1 24.5 351 67-427 269-677 (1080)
125 KOG2048 WD40 repeat protein [G 99.9 3.3E-24 7.2E-29 190.1 32.0 274 60-370 29-318 (691)
126 KOG0646 WD40 repeat protein [G 99.9 3.2E-25 6.9E-30 188.3 24.0 298 78-422 18-351 (476)
127 KOG0643 Translation initiation 99.9 4.9E-25 1.1E-29 174.2 23.0 224 139-400 7-245 (327)
128 KOG1063 RNA polymerase II elon 99.9 1.2E-24 2.5E-29 193.4 27.2 350 67-421 205-699 (764)
129 KOG2048 WD40 repeat protein [G 99.9 3.6E-24 7.8E-29 189.9 30.1 282 96-422 23-320 (691)
130 KOG0646 WD40 repeat protein [G 99.9 5.6E-25 1.2E-29 186.8 23.6 269 111-424 10-310 (476)
131 KOG1034 Transcriptional repres 99.9 3.1E-24 6.8E-29 174.5 25.0 287 96-421 36-383 (385)
132 KOG0270 WD40 repeat-containing 99.9 9.3E-25 2E-29 184.4 20.8 275 61-374 130-452 (463)
133 KOG0267 Microtubule severing p 99.9 2.4E-26 5.1E-31 205.0 10.6 244 111-411 7-258 (825)
134 KOG0269 WD40 repeat-containing 99.9 1.8E-25 3.8E-30 200.9 15.0 235 101-374 90-343 (839)
135 KOG0302 Ribosome Assembly prot 99.9 8.9E-25 1.9E-29 180.8 17.9 208 210-424 149-381 (440)
136 KOG2055 WD40 repeat protein [G 99.9 1.1E-23 2.3E-28 178.8 23.8 283 98-421 213-512 (514)
137 KOG4328 WD40 protein [Function 99.9 1.3E-23 2.9E-28 178.1 23.8 289 96-421 184-495 (498)
138 KOG1274 WD40 repeat protein [G 99.9 2.8E-23 6.1E-28 190.4 27.1 261 96-399 11-283 (933)
139 KOG4378 Nuclear protein COP1 [ 99.9 2.9E-23 6.2E-28 177.8 22.7 285 73-398 7-305 (673)
140 KOG0321 WD40 repeat-containing 99.9 7.4E-24 1.6E-28 186.7 19.3 317 69-397 65-428 (720)
141 KOG0270 WD40 repeat-containing 99.9 5.8E-24 1.3E-28 179.6 17.8 265 143-428 174-456 (463)
142 KOG1273 WD40 repeat protein [G 99.9 7.7E-23 1.7E-27 165.6 23.1 285 89-424 15-325 (405)
143 KOG0302 Ribosome Assembly prot 99.9 2.5E-23 5.4E-28 172.2 20.0 243 96-369 149-436 (440)
144 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.7E-21 3.6E-26 172.8 32.0 266 108-425 1-283 (300)
145 KOG1274 WD40 repeat protein [G 99.9 2.6E-22 5.7E-27 184.1 26.3 241 140-422 11-263 (933)
146 KOG0267 Microtubule severing p 99.9 1E-24 2.2E-29 194.6 10.3 224 96-362 26-259 (825)
147 KOG4283 Transcription-coupled 99.9 4.2E-23 9.1E-28 165.6 17.3 206 206-425 37-280 (397)
148 KOG2055 WD40 repeat protein [G 99.9 1.6E-22 3.5E-27 171.7 21.5 276 58-371 215-512 (514)
149 KOG0639 Transducin-like enhanc 99.9 4.7E-23 1E-27 176.8 16.6 244 140-427 417-669 (705)
150 KOG0322 G-protein beta subunit 99.9 4.5E-23 9.8E-28 162.8 14.6 284 92-420 7-322 (323)
151 KOG1445 Tumor-specific antigen 99.9 9E-22 2E-26 173.7 23.5 210 213-431 628-854 (1012)
152 KOG1445 Tumor-specific antigen 99.9 2E-22 4.3E-27 177.8 18.7 147 269-424 599-753 (1012)
153 KOG1188 WD40 repeat protein [G 99.9 2.8E-22 6E-27 164.1 18.2 273 109-420 41-345 (376)
154 KOG0307 Vesicle coat complex C 99.9 4.5E-23 9.7E-28 193.7 15.5 265 75-374 36-330 (1049)
155 KOG4227 WD40 repeat protein [G 99.9 9.6E-22 2.1E-26 163.9 20.4 291 96-420 54-386 (609)
156 KOG4328 WD40 protein [Function 99.9 1.1E-21 2.3E-26 166.6 20.5 282 58-371 188-495 (498)
157 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 5.6E-20 1.2E-24 163.0 32.3 274 70-396 3-300 (300)
158 KOG4378 Nuclear protein COP1 [ 99.9 2E-21 4.3E-26 166.6 19.3 269 109-424 4-283 (673)
159 KOG0307 Vesicle coat complex C 99.9 3.4E-22 7.4E-27 187.8 15.2 243 141-424 63-330 (1049)
160 KOG0290 Conserved WD40 repeat- 99.9 4.4E-20 9.5E-25 148.1 23.8 290 92-417 38-361 (364)
161 KOG1517 Guanine nucleotide bin 99.9 5.9E-20 1.3E-24 171.2 25.2 294 101-424 1067-1384(1387)
162 KOG1334 WD40 repeat protein [G 99.9 2.2E-21 4.7E-26 166.1 14.2 295 92-425 135-470 (559)
163 KOG1273 WD40 repeat protein [G 99.9 7.5E-20 1.6E-24 148.4 21.6 278 59-374 26-325 (405)
164 KOG2919 Guanine nucleotide-bin 99.9 3.8E-20 8.2E-25 150.6 19.8 267 102-412 53-361 (406)
165 KOG1007 WD repeat protein TSSC 99.9 9.4E-20 2E-24 146.1 21.3 295 76-422 38-362 (370)
166 KOG1034 Transcriptional repres 99.9 9.7E-21 2.1E-25 154.4 15.7 255 67-327 104-383 (385)
167 KOG2096 WD40 repeat protein [G 99.9 1.4E-19 3E-24 147.1 22.1 275 60-370 90-401 (420)
168 KOG1310 WD40 repeat protein [G 99.9 2.8E-20 6E-25 161.7 18.4 211 93-327 44-303 (758)
169 KOG0649 WD40 repeat protein [G 99.9 1.1E-18 2.5E-23 136.6 25.4 280 101-418 13-313 (325)
170 KOG0303 Actin-binding protein 99.9 2.8E-19 6E-24 149.4 22.9 233 135-398 74-321 (472)
171 KOG1009 Chromatin assembly com 99.9 3E-19 6.5E-24 149.7 22.6 305 96-425 11-376 (434)
172 KOG0650 WD40 repeat nucleolar 99.9 8.1E-20 1.8E-24 160.3 19.4 274 60-368 404-732 (733)
173 KOG0303 Actin-binding protein 99.9 9.8E-20 2.1E-24 152.0 18.9 211 207-431 76-304 (472)
174 KOG2919 Guanine nucleotide-bin 99.8 3.7E-19 8E-24 144.9 20.7 270 61-362 54-361 (406)
175 KOG1007 WD repeat protein TSSC 99.8 3E-19 6.4E-24 143.3 17.7 207 207-424 58-292 (370)
176 COG2319 FOG: WD40 repeat [Gene 99.8 1.5E-16 3.2E-21 148.5 38.3 315 60-425 69-404 (466)
177 KOG0322 G-protein beta subunit 99.8 3.1E-19 6.7E-24 141.4 16.3 283 60-370 18-322 (323)
178 KOG0642 Cell-cycle nuclear pro 99.8 1.9E-19 4E-24 157.1 15.7 211 207-426 289-566 (577)
179 KOG0649 WD40 repeat protein [G 99.8 2E-17 4.3E-22 129.7 24.8 263 62-368 16-313 (325)
180 KOG1587 Cytoplasmic dynein int 99.8 5E-18 1.1E-22 155.4 24.7 273 77-372 221-517 (555)
181 KOG1538 Uncharacterized conser 99.8 1.7E-18 3.7E-23 154.1 20.9 268 100-423 14-295 (1081)
182 KOG1587 Cytoplasmic dynein int 99.8 5.8E-18 1.2E-22 155.0 24.9 266 118-423 223-518 (555)
183 KOG0644 Uncharacterized conser 99.8 9.9E-20 2.1E-24 165.6 13.2 271 96-426 188-473 (1113)
184 KOG0290 Conserved WD40 repeat- 99.8 3.7E-18 8E-23 137.2 19.7 205 210-424 94-321 (364)
185 KOG2110 Uncharacterized conser 99.8 4E-16 8.7E-21 129.7 31.9 223 67-328 16-249 (391)
186 KOG1240 Protein kinase contain 99.8 7.9E-18 1.7E-22 159.5 24.7 300 87-419 1036-1431(1431)
187 KOG1963 WD40 repeat protein [G 99.8 1.3E-16 2.8E-21 146.7 30.5 288 96-423 203-540 (792)
188 KOG0642 Cell-cycle nuclear pro 99.8 6.6E-19 1.4E-23 153.7 14.7 261 91-386 286-573 (577)
189 KOG1523 Actin-related protein 99.8 1.6E-17 3.4E-22 135.4 21.1 203 97-330 9-239 (361)
190 COG2319 FOG: WD40 repeat [Gene 99.8 5.2E-16 1.1E-20 144.8 35.0 280 96-424 63-362 (466)
191 KOG2110 Uncharacterized conser 99.8 8.5E-16 1.8E-20 127.8 30.7 231 99-372 6-249 (391)
192 PRK11028 6-phosphogluconolacto 99.8 6.3E-16 1.4E-20 138.4 31.1 273 111-422 4-305 (330)
193 KOG1517 Guanine nucleotide bin 99.8 4.5E-17 9.7E-22 152.3 23.8 283 60-373 1068-1383(1387)
194 KOG1188 WD40 repeat protein [G 99.8 9.4E-18 2E-22 137.8 16.0 196 223-426 41-247 (376)
195 KOG2394 WD40 protein DMR-N9 [G 99.8 5.2E-17 1.1E-21 141.2 21.4 216 101-353 126-384 (636)
196 KOG0644 Uncharacterized conser 99.8 4.6E-19 9.9E-24 161.4 9.0 240 138-427 186-432 (1113)
197 KOG1009 Chromatin assembly com 99.8 1.6E-16 3.5E-21 133.5 22.3 276 59-374 16-375 (434)
198 KOG1538 Uncharacterized conser 99.8 1.1E-16 2.4E-21 142.8 21.2 259 60-371 16-293 (1081)
199 PRK11028 6-phosphogluconolacto 99.8 4.9E-15 1.1E-19 132.7 32.0 269 72-372 6-305 (330)
200 KOG1963 WD40 repeat protein [G 99.7 3.6E-15 7.9E-20 137.4 27.1 334 61-424 210-586 (792)
201 KOG1524 WD40 repeat-containing 99.7 3.8E-16 8.3E-21 135.9 19.2 260 96-417 12-282 (737)
202 KOG3881 Uncharacterized conser 99.7 1.1E-15 2.4E-20 128.0 19.7 266 96-398 53-343 (412)
203 KOG1524 WD40 repeat-containing 99.7 2.5E-16 5.5E-21 137.0 16.0 231 140-416 12-250 (737)
204 KOG4227 WD40 repeat protein [G 99.7 9.2E-16 2E-20 128.5 18.3 252 139-423 53-324 (609)
205 KOG1272 WD40-repeat-containing 99.7 4.5E-17 9.7E-22 139.2 10.7 272 102-425 133-413 (545)
206 KOG1523 Actin-related protein 99.7 1.9E-15 4.2E-20 123.4 18.3 208 211-424 9-239 (361)
207 KOG1240 Protein kinase contain 99.7 3.8E-15 8.3E-20 141.7 22.7 265 122-426 1034-1339(1431)
208 KOG1334 WD40 repeat protein [G 99.7 2.5E-16 5.4E-21 135.5 12.2 279 61-373 147-468 (559)
209 KOG2321 WD40 repeat protein [G 99.7 2.1E-14 4.6E-19 126.2 23.4 286 90-425 43-347 (703)
210 KOG0771 Prolactin regulatory e 99.7 1.4E-15 3.1E-20 128.7 14.5 197 216-425 148-358 (398)
211 PRK01742 tolB translocation pr 99.7 2.1E-14 4.6E-19 132.6 21.0 229 117-397 183-426 (429)
212 KOG2111 Uncharacterized conser 99.7 1.3E-12 2.8E-17 107.1 28.5 234 101-373 8-258 (346)
213 KOG2139 WD40 repeat protein [G 99.6 3.2E-13 7E-18 112.4 25.4 292 99-423 99-433 (445)
214 KOG3881 Uncharacterized conser 99.6 3.7E-14 8.1E-19 119.0 18.7 253 140-425 53-324 (412)
215 KOG1409 Uncharacterized conser 99.6 3.7E-14 8E-19 117.1 18.3 318 61-422 29-395 (404)
216 KOG1310 WD40 repeat protein [G 99.6 5.1E-15 1.1E-19 129.4 13.2 215 206-425 44-307 (758)
217 KOG1354 Serine/threonine prote 99.6 1.5E-13 3.2E-18 113.6 19.6 278 96-374 23-362 (433)
218 KOG0974 WD-repeat protein WDR6 99.6 8.5E-14 1.8E-18 130.8 20.3 189 220-424 97-291 (967)
219 KOG2111 Uncharacterized conser 99.6 1.4E-12 3E-17 106.9 24.6 175 78-283 75-258 (346)
220 KOG2139 WD40 repeat protein [G 99.6 1.5E-12 3.3E-17 108.4 25.1 277 61-371 103-431 (445)
221 KOG0771 Prolactin regulatory e 99.6 2.7E-14 5.8E-19 121.1 15.1 192 146-372 148-355 (398)
222 PRK01742 tolB translocation pr 99.6 9.5E-13 2.1E-17 121.6 26.2 193 210-421 201-401 (429)
223 KOG1272 WD40-repeat-containing 99.6 3.3E-15 7.1E-20 127.9 8.1 224 144-419 131-360 (545)
224 KOG2394 WD40 protein DMR-N9 [G 99.5 7E-14 1.5E-18 122.1 12.3 198 223-427 186-458 (636)
225 KOG4497 Uncharacterized conser 99.5 7.1E-12 1.5E-16 103.2 22.2 323 62-415 14-426 (447)
226 PRK03629 tolB translocation pr 99.5 7.9E-12 1.7E-16 115.3 25.5 228 118-396 180-427 (429)
227 KOG0974 WD-repeat protein WDR6 99.5 6.4E-11 1.4E-15 111.9 28.6 151 56-241 133-289 (967)
228 TIGR03300 assembly_YfgL outer 99.5 3.6E-10 7.8E-15 103.3 32.2 298 69-418 66-376 (377)
229 PRK04922 tolB translocation pr 99.5 2.3E-11 4.9E-16 112.8 23.6 228 118-396 185-432 (433)
230 PF02239 Cytochrom_D1: Cytochr 99.5 2.5E-10 5.4E-15 102.3 29.2 269 108-424 5-305 (369)
231 KOG4497 Uncharacterized conser 99.4 3.3E-11 7.2E-16 99.4 20.1 270 107-427 19-397 (447)
232 KOG2321 WD40 repeat protein [G 99.4 2.2E-11 4.8E-16 107.6 19.7 249 140-432 49-313 (703)
233 PRK02889 tolB translocation pr 99.4 5.6E-11 1.2E-15 109.8 22.7 231 118-397 177-425 (427)
234 KOG1409 Uncharacterized conser 99.4 5.3E-11 1.2E-15 98.8 19.4 242 138-424 20-273 (404)
235 PF10282 Lactonase: Lactonase, 99.4 6.6E-09 1.4E-13 93.3 34.5 269 118-421 14-322 (345)
236 KOG4547 WD40 repeat-containing 99.4 1.1E-10 2.3E-15 103.9 21.7 185 108-328 5-221 (541)
237 PRK05137 tolB translocation pr 99.4 2.4E-10 5.2E-15 106.2 25.4 227 118-396 183-432 (435)
238 KOG1354 Serine/threonine prote 99.4 2.8E-11 6E-16 100.4 16.6 246 60-330 29-362 (433)
239 TIGR03300 assembly_YfgL outer 99.4 8.9E-10 1.9E-14 100.7 28.2 268 105-425 62-342 (377)
240 PF02239 Cytochrom_D1: Cytochr 99.4 6.7E-10 1.4E-14 99.5 26.2 308 72-425 10-351 (369)
241 KOG4547 WD40 repeat-containing 99.4 2.9E-10 6.4E-15 101.1 23.4 204 154-372 7-221 (541)
242 KOG0280 Uncharacterized conser 99.4 2.2E-10 4.9E-15 93.1 20.2 270 118-425 47-337 (339)
243 PF08662 eIF2A: Eukaryotic tra 99.4 7.1E-11 1.5E-15 95.9 17.2 150 256-425 9-183 (194)
244 PRK03629 tolB translocation pr 99.4 4.4E-10 9.6E-15 103.8 24.5 225 79-353 180-427 (429)
245 PRK04922 tolB translocation pr 99.4 3.3E-10 7.2E-15 105.1 23.3 195 211-423 202-413 (433)
246 COG5170 CDC55 Serine/threonine 99.3 4.7E-11 1E-15 97.8 14.8 272 96-371 24-367 (460)
247 KOG1064 RAVE (regulator of V-A 99.3 1.5E-11 3.2E-16 122.0 13.7 192 206-425 2202-2402(2439)
248 KOG4190 Uncharacterized conser 99.3 1.7E-11 3.6E-16 108.1 12.2 286 90-417 726-1032(1034)
249 PF08662 eIF2A: Eukaryotic tra 99.3 2E-10 4.4E-15 93.3 17.9 127 233-372 38-180 (194)
250 PRK05137 tolB translocation pr 99.3 1.2E-09 2.6E-14 101.5 25.0 196 210-425 199-416 (435)
251 PRK02889 tolB translocation pr 99.3 7.4E-10 1.6E-14 102.4 23.0 193 211-419 194-399 (427)
252 KOG0280 Uncharacterized conser 99.3 5.9E-10 1.3E-14 90.7 19.2 205 214-427 16-248 (339)
253 KOG1064 RAVE (regulator of V-A 99.3 1.5E-11 3.2E-16 122.0 11.9 185 144-374 2210-2401(2439)
254 KOG2315 Predicted translation 99.3 3.1E-09 6.7E-14 94.2 24.2 309 63-398 41-412 (566)
255 TIGR02800 propeller_TolB tol-p 99.3 2.7E-09 5.9E-14 99.2 23.9 207 118-371 171-397 (417)
256 KOG2315 Predicted translation 99.3 3.4E-08 7.4E-13 87.7 28.6 318 77-424 10-393 (566)
257 KOG0309 Conserved WD40 repeat- 99.2 1.7E-10 3.8E-15 105.1 13.8 278 60-372 28-340 (1081)
258 PF10282 Lactonase: Lactonase, 99.2 2.4E-07 5.1E-12 83.3 33.5 275 77-371 12-322 (345)
259 KOG0309 Conserved WD40 repeat- 99.2 1.2E-10 2.5E-15 106.2 11.7 287 98-423 24-341 (1081)
260 PRK00178 tolB translocation pr 99.2 1.9E-08 4.2E-13 93.6 26.4 229 118-397 180-428 (430)
261 COG5354 Uncharacterized protei 99.2 7.2E-08 1.6E-12 84.8 27.0 320 79-424 12-398 (561)
262 COG4946 Uncharacterized protei 99.2 1.3E-07 2.9E-12 82.4 27.7 166 108-316 332-507 (668)
263 PRK04792 tolB translocation pr 99.2 1.3E-08 2.9E-13 94.5 23.0 228 118-396 199-446 (448)
264 COG2706 3-carboxymuconate cycl 99.2 9.7E-07 2.1E-11 74.8 31.5 276 77-373 15-323 (346)
265 KOG4714 Nucleoporin [Nuclear s 99.2 8.4E-10 1.8E-14 88.3 12.7 135 232-369 159-316 (319)
266 PRK11138 outer membrane biogen 99.2 1.9E-07 4.1E-12 85.8 30.1 300 70-420 71-393 (394)
267 COG2706 3-carboxymuconate cycl 99.2 4.7E-07 1E-11 76.7 29.3 267 118-423 17-323 (346)
268 KOG4532 WD40-like repeat conta 99.2 1.6E-08 3.5E-13 81.5 19.6 232 154-422 86-332 (344)
269 TIGR02800 propeller_TolB tol-p 99.1 4.3E-08 9.4E-13 91.2 25.5 191 211-422 188-398 (417)
270 KOG4190 Uncharacterized conser 99.1 2.3E-10 5.1E-15 101.0 9.2 246 137-419 730-986 (1034)
271 KOG1912 WD40 repeat protein [G 99.1 7.5E-09 1.6E-13 95.3 18.8 285 98-425 15-368 (1062)
272 PF13360 PQQ_2: PQQ-like domai 99.1 4.2E-08 9.1E-13 83.6 22.8 226 161-425 2-234 (238)
273 PF04762 IKI3: IKI3 family; I 99.1 2.4E-07 5.1E-12 92.6 30.6 307 98-423 75-458 (928)
274 PRK11138 outer membrane biogen 99.1 2.7E-07 5.9E-12 84.8 28.5 272 106-425 67-357 (394)
275 KOG4532 WD40-like repeat conta 99.1 2.7E-08 5.8E-13 80.3 18.7 195 223-425 85-286 (344)
276 TIGR02658 TTQ_MADH_Hv methylam 99.1 7.5E-07 1.6E-11 78.3 29.3 272 117-428 27-337 (352)
277 KOG2041 WD40 repeat protein [G 99.1 7.5E-08 1.6E-12 88.2 23.4 281 96-420 12-336 (1189)
278 PRK00178 tolB translocation pr 99.1 7.6E-08 1.7E-12 89.7 24.5 195 211-423 197-408 (430)
279 KOG4714 Nucleoporin [Nuclear s 99.1 1.1E-09 2.4E-14 87.6 9.1 195 215-422 39-255 (319)
280 PRK04792 tolB translocation pr 99.0 1.7E-07 3.8E-12 87.1 23.8 195 211-423 216-427 (448)
281 KOG2041 WD40 repeat protein [G 99.0 1.5E-08 3.2E-13 92.6 15.3 243 141-412 13-279 (1189)
282 KOG2695 WD40 repeat protein [G 99.0 1.9E-09 4.2E-14 89.8 7.8 149 267-424 228-379 (425)
283 KOG3914 WD repeat protein WDR4 99.0 1.8E-08 3.9E-13 85.9 13.6 161 255-426 65-228 (390)
284 PRK01029 tolB translocation pr 99.0 4.8E-07 1E-11 83.5 24.3 233 118-397 166-425 (428)
285 KOG2314 Translation initiation 99.0 1.1E-06 2.3E-11 78.4 24.6 316 61-423 215-575 (698)
286 KOG2695 WD40 repeat protein [G 98.9 4.7E-09 1E-13 87.6 8.0 164 226-396 228-402 (425)
287 KOG3914 WD repeat protein WDR4 98.9 2.6E-08 5.7E-13 84.9 12.6 146 223-374 75-226 (390)
288 PRK01029 tolB translocation pr 98.9 1.3E-06 2.7E-11 80.7 24.4 200 213-425 185-407 (428)
289 COG5170 CDC55 Serine/threonine 98.9 1.1E-07 2.4E-12 78.5 14.9 260 141-424 25-370 (460)
290 KOG0882 Cyclophilin-related pe 98.9 8.7E-08 1.9E-12 83.0 14.9 246 96-374 7-308 (558)
291 KOG1275 PAB-dependent poly(A) 98.9 5.4E-08 1.2E-12 91.4 14.5 183 108-326 147-341 (1118)
292 PLN02919 haloacid dehalogenase 98.9 4E-06 8.6E-11 85.6 29.0 201 214-425 625-892 (1057)
293 KOG2066 Vacuolar assembly/sort 98.9 1.9E-07 4.1E-12 86.8 17.5 187 141-371 38-233 (846)
294 COG4946 Uncharacterized protei 98.9 4.7E-06 1E-10 73.1 24.9 166 218-399 327-501 (668)
295 KOG1912 WD40 repeat protein [G 98.9 3.7E-07 8E-12 84.5 19.1 242 141-422 14-305 (1062)
296 PF13360 PQQ_2: PQQ-like domai 98.9 4.1E-06 8.8E-11 71.4 24.6 215 118-374 4-233 (238)
297 COG5354 Uncharacterized protei 98.8 4.1E-06 8.9E-11 74.1 24.0 276 61-374 76-398 (561)
298 TIGR02658 TTQ_MADH_Hv methylam 98.8 4.9E-05 1.1E-09 67.0 30.5 261 78-382 27-338 (352)
299 PF15492 Nbas_N: Neuroblastoma 98.8 7.3E-06 1.6E-10 67.5 23.1 199 108-330 9-262 (282)
300 PF08450 SGL: SMP-30/Gluconola 98.8 3.7E-05 8.1E-10 65.7 29.2 215 147-409 4-244 (246)
301 PLN02919 haloacid dehalogenase 98.8 2E-05 4.4E-10 80.6 31.5 251 62-331 573-892 (1057)
302 KOG2066 Vacuolar assembly/sort 98.8 2.2E-07 4.7E-12 86.4 15.1 184 211-421 38-233 (846)
303 PF04762 IKI3: IKI3 family; I 98.8 2.6E-05 5.7E-10 78.3 30.6 236 141-420 74-378 (928)
304 PF00400 WD40: WD domain, G-be 98.8 4.7E-08 1E-12 56.5 6.5 38 288-325 2-39 (39)
305 PF00400 WD40: WD domain, G-be 98.8 4.4E-08 9.5E-13 56.6 6.4 38 377-419 2-39 (39)
306 KOG0882 Cyclophilin-related pe 98.7 3.3E-07 7.2E-12 79.5 12.8 269 68-368 20-369 (558)
307 PF08450 SGL: SMP-30/Gluconola 98.7 0.00017 3.6E-09 61.8 29.5 209 103-352 4-233 (246)
308 PF15492 Nbas_N: Neuroblastoma 98.7 9.6E-05 2.1E-09 61.1 24.9 191 212-425 43-263 (282)
309 KOG1275 PAB-dependent poly(A) 98.6 2E-06 4.3E-11 81.3 17.0 186 221-425 146-345 (1118)
310 KOG2314 Translation initiation 98.6 3.7E-05 8E-10 69.0 23.0 271 102-422 214-526 (698)
311 cd00216 PQQ_DH Dehydrogenases 98.6 0.00013 2.9E-09 68.8 28.4 278 106-426 59-429 (488)
312 KOG4649 PQQ (pyrrolo-quinoline 98.6 0.00019 4E-09 58.5 25.5 108 108-250 23-133 (354)
313 KOG1645 RING-finger-containing 98.5 1.8E-05 3.9E-10 68.1 18.5 242 139-422 190-462 (463)
314 KOG2114 Vacuolar assembly/sort 98.5 2.1E-05 4.5E-10 74.3 20.4 209 144-390 27-260 (933)
315 KOG2114 Vacuolar assembly/sort 98.5 1.4E-05 3E-10 75.4 19.1 205 214-428 27-250 (933)
316 PF08596 Lgl_C: Lethal giant l 98.5 0.00015 3.3E-09 65.6 25.0 250 144-399 3-319 (395)
317 PRK04043 tolB translocation pr 98.5 0.00019 4.1E-09 66.1 25.9 190 214-423 189-402 (419)
318 KOG3621 WD40 repeat-containing 98.5 6E-05 1.3E-09 69.7 21.3 140 101-269 38-186 (726)
319 PF11768 DUF3312: Protein of u 98.4 0.00098 2.1E-08 61.0 27.9 90 235-330 239-332 (545)
320 KOG1832 HIV-1 Vpr-binding prot 98.3 2.4E-07 5.1E-12 87.1 2.6 197 203-425 1092-1295(1516)
321 KOG1645 RING-finger-containing 98.3 1.7E-05 3.6E-10 68.3 13.1 117 207-329 188-317 (463)
322 KOG1008 Uncharacterized conser 98.3 2.3E-07 5.1E-12 84.0 1.8 201 212-423 56-277 (783)
323 KOG1920 IkappaB kinase complex 98.3 0.0006 1.3E-08 67.4 24.0 277 98-420 68-364 (1265)
324 PF03178 CPSF_A: CPSF A subuni 98.3 0.00089 1.9E-08 59.8 23.7 179 232-422 2-203 (321)
325 PF07433 DUF1513: Protein of u 98.3 0.0006 1.3E-08 58.2 20.9 200 217-425 9-251 (305)
326 PRK04043 tolB translocation pr 98.2 0.0011 2.3E-08 61.2 24.0 186 144-372 189-401 (419)
327 PF11768 DUF3312: Protein of u 98.2 0.004 8.7E-08 57.2 29.3 141 276-423 239-402 (545)
328 KOG1008 Uncharacterized conser 98.2 1.4E-06 3.1E-11 79.1 4.1 244 141-421 55-335 (783)
329 PF08596 Lgl_C: Lethal giant l 98.2 0.00095 2.1E-08 60.5 21.4 205 214-425 3-294 (395)
330 PF04053 Coatomer_WDAD: Coatom 98.2 0.0011 2.3E-08 61.0 21.9 222 141-423 31-264 (443)
331 KOG1832 HIV-1 Vpr-binding prot 98.1 1.4E-06 3.1E-11 82.0 3.1 187 91-330 1093-1294(1516)
332 cd00216 PQQ_DH Dehydrogenases 98.1 0.0091 2E-07 56.6 29.5 283 72-374 65-427 (488)
333 PF03178 CPSF_A: CPSF A subuni 98.1 0.0059 1.3E-07 54.5 25.8 211 79-324 3-262 (321)
334 PF14783 BBS2_Mid: Ciliary BBS 98.1 0.0003 6.5E-09 49.9 13.6 98 215-322 2-109 (111)
335 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.1 0.0097 2.1E-07 56.7 29.8 196 108-331 69-337 (527)
336 PF07433 DUF1513: Protein of u 98.1 0.0041 9E-08 53.2 22.9 222 147-414 9-278 (305)
337 PF00780 CNH: CNH domain; Int 98.1 0.0057 1.2E-07 53.3 25.7 226 151-426 6-260 (275)
338 KOG1920 IkappaB kinase complex 98.1 0.00064 1.4E-08 67.2 19.6 202 212-422 68-323 (1265)
339 KOG3621 WD40 repeat-containing 98.1 4.9E-05 1.1E-09 70.3 11.1 150 214-363 37-190 (726)
340 PRK02888 nitrous-oxide reducta 97.9 0.0047 1E-07 58.1 21.7 110 261-372 285-405 (635)
341 PF04841 Vps16_N: Vps16, N-ter 97.9 0.012 2.7E-07 54.1 24.3 196 118-354 62-270 (410)
342 PF08553 VID27: VID27 cytoplas 97.9 0.0044 9.5E-08 60.5 21.5 99 223-326 543-646 (794)
343 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.0026 5.7E-08 45.2 14.8 104 300-417 2-110 (111)
344 PF06977 SdiA-regulated: SdiA- 97.9 0.012 2.6E-07 49.6 23.2 201 209-418 18-247 (248)
345 PHA02713 hypothetical protein; 97.9 0.0043 9.3E-08 59.6 21.0 217 118-374 273-536 (557)
346 PHA02713 hypothetical protein; 97.8 0.0038 8.3E-08 60.0 19.7 190 220-424 302-536 (557)
347 KOG4441 Proteins containing BT 97.8 0.0097 2.1E-07 57.1 22.2 218 118-374 302-549 (571)
348 KOG3617 WD40 and TPR repeat-co 97.8 0.0015 3.3E-08 62.2 16.0 68 214-281 61-131 (1416)
349 COG3386 Gluconolactonase [Carb 97.8 0.022 4.8E-07 49.8 22.2 205 110-353 39-264 (307)
350 PF06433 Me-amine-dh_H: Methyl 97.7 0.028 6.1E-07 49.0 26.5 272 118-427 18-326 (342)
351 COG3386 Gluconolactonase [Carb 97.7 0.033 7.2E-07 48.7 25.5 180 219-412 73-277 (307)
352 PF04053 Coatomer_WDAD: Coatom 97.7 0.047 1E-06 50.5 23.6 220 97-371 31-262 (443)
353 PF06433 Me-amine-dh_H: Methyl 97.6 0.04 8.8E-07 48.0 25.4 151 223-383 148-329 (342)
354 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.074 1.6E-06 50.8 33.5 265 104-374 116-493 (527)
355 KOG3617 WD40 and TPR repeat-co 97.6 0.00067 1.5E-08 64.5 10.3 105 217-327 20-131 (1416)
356 smart00320 WD40 WD40 repeats. 97.6 0.0003 6.5E-09 39.6 5.5 37 289-325 4-40 (40)
357 KOG2444 WD40 repeat protein [G 97.6 0.00015 3.3E-09 58.0 5.2 141 266-423 33-179 (238)
358 COG5276 Uncharacterized conser 97.5 0.041 8.9E-07 46.3 29.5 280 96-421 84-369 (370)
359 KOG4640 Anaphase-promoting com 97.5 0.0005 1.1E-08 63.1 8.8 92 212-307 20-115 (665)
360 PF08553 VID27: VID27 cytoplas 97.5 0.0054 1.2E-07 59.9 16.2 134 118-281 505-647 (794)
361 smart00320 WD40 WD40 repeats. 97.5 0.00033 7.2E-09 39.4 5.0 38 377-419 3-40 (40)
362 KOG4441 Proteins containing BT 97.5 0.031 6.7E-07 53.8 20.5 191 217-423 327-548 (571)
363 COG3391 Uncharacterized conser 97.4 0.092 2E-06 48.0 22.1 221 145-398 76-310 (381)
364 KOG4640 Anaphase-promoting com 97.3 0.0017 3.6E-08 59.8 9.6 94 252-353 20-115 (665)
365 PF14870 PSII_BNR: Photosynthe 97.2 0.14 3E-06 44.6 33.7 281 96-418 14-301 (302)
366 PRK02888 nitrous-oxide reducta 97.2 0.1 2.2E-06 49.6 19.4 255 155-422 69-405 (635)
367 COG5276 Uncharacterized conser 97.1 0.14 3.1E-06 43.2 28.6 242 96-374 39-288 (370)
368 PF00930 DPPIV_N: Dipeptidyl p 97.1 0.2 4.2E-06 45.5 20.4 121 297-423 183-315 (353)
369 PF00780 CNH: CNH domain; Int 97.1 0.18 3.9E-06 43.9 27.0 239 107-384 6-265 (275)
370 KOG2079 Vacuolar assembly/sort 97.0 0.0036 7.8E-08 61.4 8.9 99 266-369 102-201 (1206)
371 KOG4649 PQQ (pyrrolo-quinoline 97.0 0.15 3.4E-06 42.1 25.0 138 155-328 26-166 (354)
372 KOG1897 Damage-specific DNA bi 97.0 0.45 9.7E-06 47.2 34.6 178 233-426 751-947 (1096)
373 KOG2395 Protein involved in va 97.0 0.023 4.9E-07 51.7 12.9 138 224-370 348-499 (644)
374 PF04841 Vps16_N: Vps16, N-ter 97.0 0.3 6.6E-06 45.1 30.0 245 79-372 62-315 (410)
375 PHA03098 kelch-like protein; P 96.9 0.22 4.7E-06 48.2 20.7 163 217-387 338-526 (534)
376 PF02897 Peptidase_S9_N: Proly 96.9 0.38 8.3E-06 44.8 26.3 197 216-421 127-357 (414)
377 PRK13616 lipoprotein LpqB; Pro 96.8 0.16 3.5E-06 49.0 18.4 186 214-415 351-562 (591)
378 PHA03098 kelch-like protein; P 96.8 0.21 4.5E-06 48.3 19.2 191 217-423 290-513 (534)
379 COG0823 TolB Periplasmic compo 96.7 0.082 1.8E-06 48.8 14.5 173 234-423 175-360 (425)
380 KOG2079 Vacuolar assembly/sort 96.6 0.079 1.7E-06 52.6 14.5 107 214-326 91-202 (1206)
381 PRK13684 Ycf48-like protein; P 96.6 0.5 1.1E-05 42.4 31.7 158 252-420 172-330 (334)
382 PF12894 Apc4_WD40: Anaphase-p 96.5 0.012 2.7E-07 34.8 5.5 32 296-327 10-41 (47)
383 KOG2377 Uncharacterized conser 96.5 0.08 1.7E-06 47.4 12.6 140 256-399 26-166 (657)
384 KOG2395 Protein involved in va 96.5 0.062 1.3E-06 49.0 11.9 144 109-282 346-501 (644)
385 COG3391 Uncharacterized conser 96.4 0.71 1.5E-05 42.3 22.1 196 216-424 77-286 (381)
386 PF15390 DUF4613: Domain of un 96.4 0.24 5.3E-06 46.1 15.4 115 210-327 54-186 (671)
387 KOG1916 Nuclear protein, conta 96.4 0.00066 1.4E-08 65.0 -0.6 230 117-419 111-372 (1283)
388 TIGR03074 PQQ_membr_DH membran 96.3 1.3 2.9E-05 44.2 21.5 213 152-374 194-480 (764)
389 COG3490 Uncharacterized protei 96.3 0.21 4.6E-06 42.0 13.2 98 216-316 71-180 (366)
390 PF00930 DPPIV_N: Dipeptidyl p 96.3 0.87 1.9E-05 41.3 22.0 274 118-411 24-348 (353)
391 PRK13616 lipoprotein LpqB; Pro 96.3 0.76 1.6E-05 44.6 18.9 130 231-366 429-563 (591)
392 PF05694 SBP56: 56kDa selenium 96.2 0.28 6E-06 44.4 14.6 104 230-334 220-349 (461)
393 COG0823 TolB Periplasmic compo 96.2 0.36 7.8E-06 44.6 16.0 134 232-374 218-361 (425)
394 PHA02790 Kelch-like protein; P 96.2 0.35 7.7E-06 45.9 16.6 184 221-423 271-472 (480)
395 PF14870 PSII_BNR: Photosynthe 96.1 0.85 1.9E-05 39.9 25.5 272 60-368 20-301 (302)
396 KOG2444 WD40 repeat protein [G 96.1 0.035 7.5E-07 44.9 7.5 101 152-281 70-177 (238)
397 KOG2280 Vacuolar assembly/sort 96.0 1.3 2.8E-05 42.8 18.3 199 98-332 43-251 (829)
398 PF12894 Apc4_WD40: Anaphase-p 96.0 0.026 5.7E-07 33.4 4.9 32 386-422 11-42 (47)
399 PF14655 RAB3GAP2_N: Rab3 GTPa 95.9 1.4 3E-05 40.4 25.3 78 293-374 303-401 (415)
400 PHA02790 Kelch-like protein; P 95.8 1.7 3.6E-05 41.4 19.0 181 108-329 272-472 (480)
401 COG3204 Uncharacterized protei 95.7 1.2 2.5E-05 38.1 18.4 162 210-372 83-264 (316)
402 PF12234 Rav1p_C: RAVE protein 95.7 0.99 2.1E-05 43.6 16.4 122 289-420 21-155 (631)
403 PF06977 SdiA-regulated: SdiA- 95.6 1.2 2.6E-05 37.8 24.4 204 93-324 15-247 (248)
404 PF08728 CRT10: CRT10; InterP 95.6 0.73 1.6E-05 44.9 15.3 111 214-326 102-245 (717)
405 PF02897 Peptidase_S9_N: Proly 95.5 2.2 4.7E-05 39.8 26.5 184 233-424 203-407 (414)
406 KOG1897 Damage-specific DNA bi 95.4 3.3 7.1E-05 41.5 28.2 195 96-327 446-659 (1096)
407 PF08728 CRT10: CRT10; InterP 95.4 0.39 8.4E-06 46.7 12.9 121 300-421 103-246 (717)
408 TIGR03547 muta_rot_YjhT mutatr 95.2 2.3 5.1E-05 38.4 22.4 63 108-173 18-96 (346)
409 KOG1900 Nuclear pore complex, 95.1 1.8 4E-05 44.6 17.0 76 251-328 177-273 (1311)
410 COG3204 Uncharacterized protei 95.1 1.9 4E-05 36.9 14.9 166 250-423 83-265 (316)
411 PF14727 PHTB1_N: PTHB1 N-term 95.1 2.7 5.9E-05 38.7 32.3 280 108-425 37-364 (418)
412 KOG4499 Ca2+-binding protein R 95.1 1.6 3.5E-05 35.9 16.6 149 252-412 108-276 (310)
413 PF10168 Nup88: Nuclear pore c 94.9 4.6 9.9E-05 40.3 21.1 79 253-332 85-184 (717)
414 KOG3630 Nuclear pore complex, 94.9 0.42 9.1E-06 48.2 11.6 124 226-354 118-254 (1405)
415 KOG1916 Nuclear protein, conta 94.8 0.14 3.1E-06 49.9 8.2 165 250-421 130-323 (1283)
416 COG3490 Uncharacterized protei 94.8 2.3 4.9E-05 36.2 15.2 231 147-419 72-346 (366)
417 PF10313 DUF2415: Uncharacteri 94.7 0.21 4.5E-06 28.7 5.6 31 298-328 1-34 (43)
418 KOG2377 Uncharacterized conser 94.6 0.84 1.8E-05 41.3 11.8 134 216-354 26-164 (657)
419 COG3292 Predicted periplasmic 94.6 4.1 8.9E-05 38.3 17.5 272 96-417 162-443 (671)
420 PF14583 Pectate_lyase22: Olig 94.6 3.4 7.3E-05 37.2 27.3 180 231-423 167-383 (386)
421 KOG2280 Vacuolar assembly/sort 94.4 2.5 5.5E-05 40.9 15.0 90 231-324 63-152 (829)
422 KOG3630 Nuclear pore complex, 94.2 0.21 4.5E-06 50.1 8.0 96 213-314 156-260 (1405)
423 PRK14131 N-acetylneuraminic ac 94.2 4.4 9.6E-05 37.1 21.4 63 108-173 39-117 (376)
424 PF10647 Gmad1: Lipoprotein Lp 94.1 3.4 7.3E-05 35.4 17.9 158 254-423 25-199 (253)
425 COG1520 FOG: WD40-like repeat 94.0 4.7 0.0001 36.9 21.9 193 149-374 65-271 (370)
426 PF14727 PHTB1_N: PTHB1 N-term 94.0 5 0.00011 37.0 26.2 143 154-327 39-204 (418)
427 PF07569 Hira: TUP1-like enhan 94.0 0.6 1.3E-05 38.8 9.3 70 212-281 12-95 (219)
428 TIGR03074 PQQ_membr_DH membran 93.8 8.1 0.00018 38.9 22.8 69 108-177 194-285 (764)
429 PF12234 Rav1p_C: RAVE protein 93.8 2.6 5.6E-05 40.8 14.3 115 253-371 30-156 (631)
430 KOG2247 WD40 repeat-containing 93.7 0.0025 5.4E-08 57.1 -5.3 243 108-396 46-305 (615)
431 PLN00033 photosystem II stabil 93.4 6.4 0.00014 36.2 17.8 110 211-324 279-396 (398)
432 PF15390 DUF4613: Domain of un 93.3 4.9 0.00011 38.0 14.4 151 253-421 20-186 (671)
433 PF07569 Hira: TUP1-like enhan 93.2 0.68 1.5E-05 38.5 8.5 74 344-423 13-97 (219)
434 TIGR02604 Piru_Ver_Nterm putat 92.8 7.5 0.00016 35.5 16.8 73 253-327 14-99 (367)
435 PF05096 Glu_cyclase_2: Glutam 92.7 5.6 0.00012 33.8 26.1 187 90-316 34-249 (264)
436 PF05694 SBP56: 56kDa selenium 92.7 7.9 0.00017 35.5 19.0 192 223-424 88-345 (461)
437 TIGR03548 mutarot_permut cycli 92.6 7.3 0.00016 34.8 21.1 109 218-330 69-197 (323)
438 PF02333 Phytase: Phytase; In 92.4 8.2 0.00018 35.0 24.6 193 223-423 69-292 (381)
439 KOG1898 Splicing factor 3b, su 92.4 14 0.00031 37.6 18.0 177 233-423 854-1050(1205)
440 PF10313 DUF2415: Uncharacteri 91.6 0.77 1.7E-05 26.4 4.7 35 387-423 1-35 (43)
441 PF05096 Glu_cyclase_2: Glutam 91.5 8.1 0.00018 32.9 24.3 187 214-411 46-251 (264)
442 PF07995 GSDH: Glucose / Sorbo 90.9 12 0.00025 33.7 26.9 57 355-416 273-330 (331)
443 KOG4460 Nuclear pore complex, 90.1 4.4 9.5E-05 37.7 10.4 79 254-332 105-203 (741)
444 KOG1900 Nuclear pore complex, 89.8 4.8 0.0001 41.8 11.5 146 228-374 95-275 (1311)
445 KOG2247 WD40 repeat-containing 89.7 0.063 1.4E-06 48.6 -1.2 226 155-425 49-284 (615)
446 PLN02153 epithiospecifier prot 89.4 16 0.00035 33.0 20.3 154 219-379 30-232 (341)
447 PF12657 TFIIIC_delta: Transcr 89.4 4.7 0.0001 32.1 9.4 37 387-423 86-123 (173)
448 PLN02153 epithiospecifier prot 89.4 16 0.00035 33.0 23.3 27 217-243 81-112 (341)
449 PF12657 TFIIIC_delta: Transcr 89.3 3 6.5E-05 33.3 8.2 31 298-328 86-122 (173)
450 COG5167 VID27 Protein involved 89.1 9.9 0.00022 35.4 11.8 138 225-371 483-632 (776)
451 PLN02193 nitrile-specifier pro 88.2 24 0.00052 33.6 20.2 55 118-173 194-255 (470)
452 TIGR02604 Piru_Ver_Nterm putat 88.1 21 0.00045 32.6 16.0 103 213-316 14-142 (367)
453 PF07995 GSDH: Glucose / Sorbo 88.0 11 0.00024 33.8 11.8 53 254-308 3-59 (331)
454 PF14781 BBS2_N: Ciliary BBSom 87.8 9.7 0.00021 28.5 12.5 101 223-330 11-128 (136)
455 TIGR03548 mutarot_permut cycli 87.8 20 0.00043 32.1 22.2 63 220-283 122-196 (323)
456 COG3823 Glutamine cyclotransfe 87.7 14 0.00029 30.2 13.7 123 91-247 36-165 (262)
457 PF10433 MMS1_N: Mono-function 87.7 27 0.00059 33.6 22.2 232 68-307 222-503 (504)
458 COG5167 VID27 Protein involved 87.7 14 0.0003 34.5 11.7 139 267-421 484-632 (776)
459 COG4590 ABC-type uncharacteriz 87.6 3.8 8.2E-05 37.3 8.2 166 248-426 216-391 (733)
460 PF14781 BBS2_N: Ciliary BBSom 87.5 10 0.00022 28.4 11.9 109 259-374 5-128 (136)
461 PF12341 DUF3639: Protein of u 87.5 2 4.3E-05 21.9 3.8 26 213-238 2-27 (27)
462 PLN00033 photosystem II stabil 87.5 24 0.00051 32.6 33.2 151 255-418 241-396 (398)
463 KOG1898 Splicing factor 3b, su 87.0 40 0.00086 34.7 17.6 134 231-371 911-1048(1205)
464 PF14761 HPS3_N: Hermansky-Pud 86.7 16 0.00035 30.0 15.1 151 216-370 21-213 (215)
465 KOG1983 Tomosyn and related SN 86.7 13 0.00028 38.9 12.5 32 214-245 37-70 (993)
466 KOG4499 Ca2+-binding protein R 86.6 17 0.00037 30.2 16.7 98 253-354 158-264 (310)
467 COG1520 FOG: WD40-like repeat 86.6 26 0.00055 32.1 19.8 109 222-335 68-179 (370)
468 PRK14131 N-acetylneuraminic ac 86.2 27 0.00058 32.0 22.7 25 219-243 82-117 (376)
469 PF11715 Nup160: Nucleoporin N 86.2 6.7 0.00015 38.1 10.1 34 298-331 215-252 (547)
470 PF10168 Nup88: Nuclear pore c 86.0 40 0.00088 33.9 22.3 34 210-243 144-182 (717)
471 PF14761 HPS3_N: Hermansky-Pud 85.7 18 0.0004 29.6 15.2 139 257-425 22-167 (215)
472 PF12768 Rax2: Cortical protei 85.6 23 0.00051 30.8 12.1 118 272-397 15-147 (281)
473 PLN02193 nitrile-specifier pro 85.2 35 0.00077 32.4 25.1 154 219-380 226-418 (470)
474 PF12341 DUF3639: Protein of u 84.7 3.1 6.6E-05 21.2 3.7 25 345-369 3-27 (27)
475 KOG3522 Predicted guanine nucl 84.0 6.5 0.00014 38.8 8.4 75 96-172 624-699 (925)
476 PRK13684 Ycf48-like protein; P 83.3 34 0.00074 30.8 29.4 155 212-370 172-330 (334)
477 PF11715 Nup160: Nucleoporin N 83.0 7.3 0.00016 37.9 8.8 70 352-425 157-252 (547)
478 TIGR03547 muta_rot_YjhT mutatr 82.8 36 0.00079 30.7 22.7 54 273-329 168-227 (346)
479 PF14583 Pectate_lyase22: Olig 82.8 38 0.00081 30.9 23.4 156 210-371 185-381 (386)
480 smart00564 PQQ beta-propeller 82.6 4.9 0.00011 21.2 4.4 26 223-248 7-32 (33)
481 KOG4460 Nuclear pore complex, 82.5 44 0.00096 31.5 13.2 76 299-374 105-201 (741)
482 PF12768 Rax2: Cortical protei 82.3 33 0.00071 29.9 11.8 51 118-173 17-75 (281)
483 KOG2063 Vacuolar assembly/sort 82.1 39 0.00085 34.5 13.1 83 143-244 16-100 (877)
484 PF14655 RAB3GAP2_N: Rab3 GTPa 81.7 44 0.00096 31.0 22.1 75 348-425 314-402 (415)
485 smart00036 CNH Domain found in 81.7 37 0.0008 30.0 26.3 58 109-171 14-74 (302)
486 KOG1896 mRNA cleavage and poly 81.2 77 0.0017 33.4 26.2 185 230-424 1002-1216(1366)
487 PF01011 PQQ: PQQ enzyme repea 81.0 5.2 0.00011 22.3 4.2 26 224-249 2-27 (38)
488 PF03022 MRJP: Major royal jel 80.7 39 0.00084 29.6 20.8 186 118-315 35-253 (287)
489 PF08801 Nucleoporin_N: Nup133 80.4 51 0.0011 30.8 19.7 29 345-373 191-221 (422)
490 PF07676 PD40: WD40-like Beta 80.3 8 0.00017 21.5 5.1 35 290-324 1-38 (39)
491 KOG1983 Tomosyn and related SN 79.5 88 0.0019 33.0 18.9 71 252-331 198-268 (993)
492 PF14779 BBS1: Ciliary BBSome 79.4 21 0.00046 30.3 9.0 69 210-278 174-255 (257)
493 KOG3616 Selective LIM binding 79.1 38 0.00083 33.4 11.4 106 142-279 14-124 (1636)
494 PRK10115 protease 2; Provision 78.6 78 0.0017 31.9 24.7 193 214-422 128-345 (686)
495 KOG2063 Vacuolar assembly/sort 78.0 88 0.0019 32.2 16.9 75 100-174 17-100 (877)
496 KOG3522 Predicted guanine nucl 77.8 6.7 0.00014 38.8 6.3 148 266-422 550-698 (925)
497 PF08801 Nucleoporin_N: Nup133 77.5 63 0.0014 30.2 14.0 30 388-422 191-220 (422)
498 KOG2006 WD40 repeat protein [G 77.0 88 0.0019 32.3 13.5 65 108-172 160-227 (1023)
499 PF01011 PQQ: PQQ enzyme repea 76.4 11 0.00023 21.0 4.6 26 311-336 2-27 (38)
500 COG4590 ABC-type uncharacteriz 75.6 15 0.00033 33.6 7.5 169 88-282 209-387 (733)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-52 Score=343.78 Aligned_cols=313 Identities=26% Similarity=0.380 Sum_probs=279.0
Q ss_pred cccceeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeec
Q 013717 58 SNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINT 134 (437)
Q Consensus 58 ~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~ 134 (437)
...+++|.|....+++++.|.++++||.....+.....+|...|.|++|+ |..||+|+.| .|++||.++++ .....
T Consensus 117 ~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~-~~g~~ 195 (480)
T KOG0271|consen 117 AVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ-QIGRA 195 (480)
T ss_pred cEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCC-ccccc
Confidence 44688999999999999999999999998855554444999999999999 9999999999 99999999873 33444
Q ss_pred cccCCCCcccEEEEEEeCC-------eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeecccee
Q 013717 135 FNDNDSSSGSVKSVTFCDG-------KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKL 207 (437)
Q Consensus 135 ~~~~~~h~~~v~~l~~~~~-------~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (437)
+ .+|...|++++|.|- .|++++.||.|+|||+..+.....+
T Consensus 196 l---~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~l----------------------------- 243 (480)
T KOG0271|consen 196 L---RGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTL----------------------------- 243 (480)
T ss_pred c---cCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEe-----------------------------
Confidence 4 789999999999743 2999999999999999987655444
Q ss_pred eecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecC-----------------------
Q 013717 208 WIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAG----------------------- 263 (437)
Q Consensus 208 ~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~----------------------- 263 (437)
.+|..+|+|+.|.. +++++|+.|++|++|+...|++...+++|...|+.++.+-+
T Consensus 244 -sgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~ 322 (480)
T KOG0271|consen 244 -SGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQK 322 (480)
T ss_pred -ccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHH
Confidence 37999999999997 99999999999999999999999999999999999998721
Q ss_pred -------------C-eEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 013717 264 -------------G-TVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDS 329 (437)
Q Consensus 264 -------------~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 329 (437)
+ ++++|+.|.++.+|+-. ...+++..+.+|..-|+.+.|+||++++++++.|..|++||.+++
T Consensus 323 ~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~---~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG 399 (480)
T KOG0271|consen 323 KALERYEAVLKDSGERLVSGSDDFTLFLWNPF---KSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG 399 (480)
T ss_pred HHHHHHHHhhccCcceeEEecCCceEEEeccc---ccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc
Confidence 1 29999999999999743 334577788899999999999999999999999999999999999
Q ss_pred ccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEE
Q 013717 330 ANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVF 407 (437)
Q Consensus 330 ~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~ 407 (437)
+ +...+++|-..|..++|+.+ +|++|+.|.++++|++++.+ +...+.+|.+.|.++.|+|++. .++
T Consensus 400 k----~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK---l~~DLpGh~DEVf~vDwspDG~-----rV~ 467 (480)
T KOG0271|consen 400 K----FLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK---LKQDLPGHADEVFAVDWSPDGQ-----RVA 467 (480)
T ss_pred c----hhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee---ecccCCCCCceEEEEEecCCCc-----eee
Confidence 8 77778999999999999877 99999999999999999876 8889999999999999999995 799
Q ss_pred EecCCCcEEEEe
Q 013717 408 SGSLDGEIRAWQ 419 (437)
Q Consensus 408 s~~~dg~i~iw~ 419 (437)
+|+.|..+++|.
T Consensus 468 sggkdkv~~lw~ 479 (480)
T KOG0271|consen 468 SGGKDKVLRLWR 479 (480)
T ss_pred cCCCceEEEeec
Confidence 999999999995
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-49 Score=325.29 Aligned_cols=293 Identities=25% Similarity=0.379 Sum_probs=258.0
Q ss_pred CCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEe
Q 013717 86 SHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAH 159 (437)
Q Consensus 86 ~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~ 159 (437)
..-..|...+ ||.++|.|++|+ |..||+|+.| ++|+||+.+. ....++ ++|...|.|++|+||+ |++|+
T Consensus 102 rpvtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~Te--Tp~~t~---KgH~~WVlcvawsPDgk~iASG~ 176 (480)
T KOG0271|consen 102 RPVTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTE--TPLFTC---KGHKNWVLCVAWSPDGKKIASGS 176 (480)
T ss_pred cccceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCC--Ccceee---cCCccEEEEEEECCCcchhhccc
Confidence 4456677788 999999999999 8999999999 9999999993 455555 7899999999999887 99999
Q ss_pred cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-------CeEEEEECCC
Q 013717 160 QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-------GLIYSVSWDK 232 (437)
Q Consensus 160 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~l~~~~~dg 232 (437)
.||.|++||..+++... +.+.+|...|++++|.| ++|++++.||
T Consensus 177 ~dg~I~lwdpktg~~~g-----------------------------~~l~gH~K~It~Lawep~hl~p~~r~las~skDg 227 (480)
T KOG0271|consen 177 KDGSIRLWDPKTGQQIG-----------------------------RALRGHKKWITALAWEPLHLVPPCRRLASSSKDG 227 (480)
T ss_pred cCCeEEEecCCCCCccc-----------------------------ccccCcccceeEEeecccccCCCccceecccCCC
Confidence 99999999999887432 22357999999999977 7899999999
Q ss_pred cEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEc------
Q 013717 233 SLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALS------ 306 (437)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~------ 306 (437)
.|+|||+..++++..+.+|..+|+|+.|--+|.+++|+.|++|++|+... +.+.+.+++|...|+.++.+
T Consensus 228 ~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~d----G~~~r~lkGHahwvN~lalsTdy~LR 303 (480)
T KOG0271|consen 228 SVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALD----GKLCRELKGHAHWVNHLALSTDYVLR 303 (480)
T ss_pred CEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccc----hhHHHhhcccchheeeeeccchhhhh
Confidence 99999999999999999999999999999888899999999999997653 45788899999999999877
Q ss_pred -----cCCC-------------------------EEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--
Q 013717 307 -----DDGT-------------------------VLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-- 354 (437)
Q Consensus 307 -----~~~~-------------------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-- 354 (437)
|.++ .|++|+.|.++.+|+....+. .+....+|...|..+.|+|+
T Consensus 304 tgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kk---pi~rmtgHq~lVn~V~fSPd~r 380 (480)
T KOG0271|consen 304 TGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKK---PITRMTGHQALVNHVSFSPDGR 380 (480)
T ss_pred ccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEeccccccc---chhhhhchhhheeeEEECCCcc
Confidence 2233 499999999999999865432 44457889999999988877
Q ss_pred EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCCC
Q 013717 355 LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNS 427 (437)
Q Consensus 355 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 427 (437)
++|+++.|..|++||-++++ .+..+++|-++|..++|+.|. ++|++|+.|.++++|++++.+...
T Consensus 381 ~IASaSFDkSVkLW~g~tGk---~lasfRGHv~~VYqvawsaDs-----RLlVS~SkDsTLKvw~V~tkKl~~ 445 (480)
T KOG0271|consen 381 YIASASFDKSVKLWDGRTGK---FLASFRGHVAAVYQVAWSADS-----RLLVSGSKDSTLKVWDVRTKKLKQ 445 (480)
T ss_pred EEEEeecccceeeeeCCCcc---hhhhhhhccceeEEEEeccCc-----cEEEEcCCCceEEEEEeeeeeecc
Confidence 99999999999999999988 899999999999999999988 599999999999999999987543
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.1e-45 Score=305.96 Aligned_cols=273 Identities=23% Similarity=0.348 Sum_probs=248.4
Q ss_pred CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC----eEEEEecCCeEEEEe
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG----KIFTAHQDCKIRVWQ 168 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~l~s~~~dg~i~iwd 168 (437)
|-+.+|..+.|+ ++.||||+-+ .++||+... ...+.++ .+|...|.++.|+|. .+++|+.||++++|+
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~--~~~~~~l---~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~ 247 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQ--CNLLQTL---RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWK 247 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCC--cceeEEE---eccccceeeEEEccCCCccceeeeccCCceeeec
Confidence 778999999999 9999999999 999999998 4556666 789999999999976 299999999999999
Q ss_pred CCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEE
Q 013717 169 LTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLE 246 (437)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~ 246 (437)
+++...+..+. +|...|..++|+| ++|++++.|.+-++||++++..+.
T Consensus 248 ~~~e~~l~~l~------------------------------gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL 297 (459)
T KOG0272|consen 248 LSQETPLQDLE------------------------------GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELL 297 (459)
T ss_pred cCCCcchhhhh------------------------------cchhhheeeeecCCCceeeecccccchhhcccccchhhH
Confidence 99875554443 7999999999999 999999999999999999999988
Q ss_pred EeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEE
Q 013717 247 SIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD 325 (437)
Q Consensus 247 ~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 325 (437)
...+|...|.+++|.+||. +++|+.|..-+|||++++. .+..+.+|..+|.+|+|+|+|..|++|+.|++++|||
T Consensus 298 ~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr----~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWD 373 (459)
T KOG0272|consen 298 LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR----CIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWD 373 (459)
T ss_pred hhcccccccceeEecCCCceeeccCccchhheeecccCc----EEEEecccccceeeEeECCCceEEeecCCCCcEEEee
Confidence 8899999999999999999 8999999999999998765 7788899999999999999999999999999999999
Q ss_pred CCCCccceEEeeeecccccceEEEEeeC---CEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCc
Q 013717 326 REDSANHMVVTGALRGHGKAILCLINVA---GLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNG 402 (437)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 402 (437)
++..+. ...+.+|...|..+.+.+ .+|++++.|++++||..++.. +++.+.||.+.|.+++.++++.
T Consensus 374 LR~r~~----ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~---~~ksLaGHe~kV~s~Dis~d~~--- 443 (459)
T KOG0272|consen 374 LRMRSE----LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS---PLKSLAGHEGKVISLDISPDSQ--- 443 (459)
T ss_pred eccccc----ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc---cchhhcCCccceEEEEeccCCc---
Confidence 987653 556788999998888875 399999999999999988755 9999999999999999999984
Q ss_pred eEEEEEecCCCcEEEEe
Q 013717 403 VVSVFSGSLDGEIRAWQ 419 (437)
Q Consensus 403 ~~~l~s~~~dg~i~iw~ 419 (437)
+++|++.|.++++|.
T Consensus 444 --~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 444 --AIATSSFDRTIKLWR 458 (459)
T ss_pred --eEEEeccCceeeecc
Confidence 899999999999995
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.8e-42 Score=273.01 Aligned_cols=285 Identities=19% Similarity=0.276 Sum_probs=246.4
Q ss_pred eeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEE
Q 013717 92 SVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIR 165 (437)
Q Consensus 92 ~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~ 165 (437)
.++| ||...|.++.|+ .++|++++.| .+.|||.-+.......++ ....|..++|+|.. +++|+.|+...
T Consensus 48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl-----~s~WVMtCA~sPSg~~VAcGGLdN~Cs 122 (343)
T KOG0286|consen 48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPL-----PSSWVMTCAYSPSGNFVACGGLDNKCS 122 (343)
T ss_pred EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEec-----CceeEEEEEECCCCCeEEecCcCceeE
Confidence 3667 999999999999 8999999999 999999988544444443 67899999999876 88999999999
Q ss_pred EEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcce
Q 013717 166 VWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRC 244 (437)
Q Consensus 166 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 244 (437)
||++.+.+..... ...+.+.+|.+.+.|+.|-+ ..|++++.|.+..+||+++++.
T Consensus 123 iy~ls~~d~~g~~------------------------~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~ 178 (343)
T KOG0286|consen 123 IYPLSTRDAEGNV------------------------RVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQ 178 (343)
T ss_pred EEecccccccccc------------------------eeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceE
Confidence 9999865321111 12244568999999999988 9999999999999999999999
Q ss_pred EEEeecccccEEEEEEec-CCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEE
Q 013717 245 LESIKAHEDAVNAVAVSA-GGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSIL 322 (437)
Q Consensus 245 ~~~~~~~~~~v~~~~~~~-~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 322 (437)
+..+.+|.+.|.++.++| +++ +++|+.|+..++||++.. ...+.|.+|++.|+++.|.|+|.-|++|+.|++.+
T Consensus 179 ~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~----~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcR 254 (343)
T KOG0286|consen 179 TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG----QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCR 254 (343)
T ss_pred EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc----ceeEeecccccccceEEEccCCCeeeecCCCceeE
Confidence 999999999999999999 777 999999999999999865 47899999999999999999999999999999999
Q ss_pred EEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCC
Q 013717 323 VWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQ 400 (437)
Q Consensus 323 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 400 (437)
+||++.......+.. ......|++++|+ |.+|++|..|.++.+||.-.++ .+..+.+|.+.|.++..+|++-
T Consensus 255 lyDlRaD~~~a~ys~--~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e---~vg~L~GHeNRvScl~~s~DG~- 328 (343)
T KOG0286|consen 255 LYDLRADQELAVYSH--DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE---RVGVLAGHENRVSCLGVSPDGM- 328 (343)
T ss_pred EEeecCCcEEeeecc--CcccCCceeEEEcccccEEEeeecCCceeEeeccccc---eEEEeeccCCeeEEEEECCCCc-
Confidence 999998765554432 3344566777765 7799999999999999998776 7889999999999999999994
Q ss_pred CceEEEEEecCCCcEEEEe
Q 013717 401 NGVVSVFSGSLDGEIRAWQ 419 (437)
Q Consensus 401 ~~~~~l~s~~~dg~i~iw~ 419 (437)
.++||+.|.++|||.
T Consensus 329 ----av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 329 ----AVATGSWDSTLRIWA 343 (343)
T ss_pred ----EEEecchhHheeecC
Confidence 799999999999994
No 5
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4e-41 Score=261.81 Aligned_cols=286 Identities=18% Similarity=0.333 Sum_probs=246.6
Q ss_pred ccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccE
Q 013717 69 PSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSV 145 (437)
Q Consensus 69 ~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v 145 (437)
-.+++.++|.+|++|.... +.|..++ .....|+.|... +++||+|+...||+||++++....+.++ ++|...|
T Consensus 11 viLvsA~YDhTIRfWqa~t-G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~---e~h~kNV 86 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALT-GICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATF---EGHTKNV 86 (311)
T ss_pred eEEEeccCcceeeeeehhc-CeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEE---eccCCce
Confidence 4688999999999999876 7888888 556789999998 7888888877999999999877677777 7899999
Q ss_pred EEEEEeCC-e-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-
Q 013717 146 KSVTFCDG-K-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN- 222 (437)
Q Consensus 146 ~~l~~~~~-~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 222 (437)
+++.|.-+ + +++|+.||+++|||++.....+.+. |..+|+++..+|
T Consensus 87 taVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-------------------------------~~spVn~vvlhpn 135 (311)
T KOG0315|consen 87 TAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-------------------------------HNSPVNTVVLHPN 135 (311)
T ss_pred EEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-------------------------------CCCCcceEEecCC
Confidence 99999844 4 9999999999999999865444443 889999999999
Q ss_pred -CeEEEEECCCcEEEEECCCcceEEEee-cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCc--ccceeeEEeeCcc
Q 013717 223 -GLIYSVSWDKSLKIWRASDLRCLESIK-AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNE--KRHALIATLEKHK 297 (437)
Q Consensus 223 -~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~ 297 (437)
..|++|..+|.|++||+.+..+...+. .....|.++.+.|||. ++.+...|...+|++.... ...+++.+++.|.
T Consensus 136 QteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~ 215 (311)
T KOG0315|consen 136 QTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHN 215 (311)
T ss_pred cceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheeccc
Confidence 899999999999999999887766654 4557899999999999 8888889999999986533 2345677889999
Q ss_pred ccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCC
Q 013717 298 SAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGR 375 (437)
Q Consensus 298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~ 375 (437)
+.+....+|||+++|++++.|.+++||+.++. +.....+.+|...+...+|+.+ ||++|+.|+.+++|++..++
T Consensus 216 ~~il~C~lSPd~k~lat~ssdktv~iwn~~~~---~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k- 291 (311)
T KOG0315|consen 216 GHILRCLLSPDVKYLATCSSDKTVKIWNTDDF---FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGK- 291 (311)
T ss_pred ceEEEEEECCCCcEEEeecCCceEEEEecCCc---eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCc-
Confidence 99999999999999999999999999999865 4466678899999988888755 99999999999999999987
Q ss_pred eeeeeeecCCCCCeeEEEEE
Q 013717 376 FGCLAVLEGHTKPVKSLTAV 395 (437)
Q Consensus 376 ~~~~~~~~~h~~~v~~l~~~ 395 (437)
.++...+|..+..|++..
T Consensus 292 --~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 292 --EVRQYQGHHKAAVCVALN 309 (311)
T ss_pred --eeeecCCcccccEEEEee
Confidence 788999999888887754
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.3e-42 Score=287.93 Aligned_cols=267 Identities=22% Similarity=0.334 Sum_probs=240.0
Q ss_pred ccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee----CCEEEEEecC-eEEEEeCCCCceeee
Q 013717 59 NLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH----HNFLYAASSH-EINVYDRTGTTWTSI 132 (437)
Q Consensus 59 ~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~----~~~l~s~~~d-~v~vwd~~~~~~~~~ 132 (437)
.....|++....+++.|-+|.+.+|+.... ..+++| ||...|.++.|+ +..||||+.| ++++|++.+. ..+
T Consensus 178 is~~~fS~ds~~laT~swsG~~kvW~~~~~-~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e--~~l 254 (459)
T KOG0272|consen 178 ISGCSFSRDSKHLATGSWSGLVKVWSVPQC-NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE--TPL 254 (459)
T ss_pred ceeeEeecCCCeEEEeecCCceeEeecCCc-ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC--cch
Confidence 345688899999999999999999999886 777777 999999999999 3489999999 9999999883 445
Q ss_pred eccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeec
Q 013717 133 NTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIE 210 (437)
Q Consensus 133 ~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (437)
..+ .+|...|..++|+|++ |+|++.|.+-++||+.++...... .|
T Consensus 255 ~~l---~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~Q------------------------------EG 301 (459)
T KOG0272|consen 255 QDL---EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQ------------------------------EG 301 (459)
T ss_pred hhh---hcchhhheeeeecCCCceeeecccccchhhcccccchhhHhh------------------------------cc
Confidence 555 7899999999999876 999999999999999998755443 37
Q ss_pred CCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccc
Q 013717 211 HGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRH 287 (437)
Q Consensus 211 ~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~ 287 (437)
|...|.+++|++ .++++|+.|..-+|||+++++++..+.+|..+|.+++|+|+|. +|+|+.|++++|||++...
T Consensus 302 Hs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~--- 378 (459)
T KOG0272|consen 302 HSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS--- 378 (459)
T ss_pred cccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccc---
Confidence 999999999998 8999999999999999999999999999999999999999999 9999999999999998654
Q ss_pred eeeEEeeCccccEEEEEEcc-CCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCc
Q 013717 288 ALIATLEKHKSAVNALALSD-DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRT 364 (437)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~ 364 (437)
.+..+.+|.+-|+.|.|+| .|.+|++++.|++++||..++.. +.+.+.||.+.|.+++.+++ ++++++.|.+
T Consensus 379 -~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~----~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT 453 (459)
T KOG0272|consen 379 -ELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWS----PLKSLAGHEGKVISLDISPDSQAIATSSFDRT 453 (459)
T ss_pred -cceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcc----cchhhcCCccceEEEEeccCCceEEEeccCce
Confidence 4778889999999999999 78899999999999999997765 66678899999999887655 8999999999
Q ss_pred EEEee
Q 013717 365 VRIWQ 369 (437)
Q Consensus 365 i~iwd 369 (437)
+++|.
T Consensus 454 ~KLW~ 458 (459)
T KOG0272|consen 454 IKLWR 458 (459)
T ss_pred eeecc
Confidence 99995
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.8e-40 Score=258.83 Aligned_cols=285 Identities=23% Similarity=0.349 Sum_probs=232.5
Q ss_pred eeeeec-CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCC
Q 013717 90 INSVQL-GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDC 162 (437)
Q Consensus 90 ~~~~~~-~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg 162 (437)
.+..++ +|++.|+.++.. .+.+++++.| .+.+|++.....+.-...+.+.+|+..|..+..+++. .++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 344566 999999999998 7899999999 9999999876554433334447899999999999665 89999999
Q ss_pred eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECC
Q 013717 163 KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRAS 240 (437)
Q Consensus 163 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~ 240 (437)
++++||+.+++..+ .|.+|...|.+++|++ ..+++|+.|.+|++||+.
T Consensus 86 ~lrlWDl~~g~~t~------------------------------~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~ 135 (315)
T KOG0279|consen 86 TLRLWDLATGESTR------------------------------RFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL 135 (315)
T ss_pred eEEEEEecCCcEEE------------------------------EEEecCCceEEEEecCCCceeecCCCcceeeeeeec
Confidence 99999999886433 3458999999999998 899999999999999986
Q ss_pred CcceEEEeecc--cccEEEEEEecCC--e-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEE
Q 013717 241 DLRCLESIKAH--EDAVNAVAVSAGG--T-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSG 315 (437)
Q Consensus 241 ~~~~~~~~~~~--~~~v~~~~~~~~~--~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 315 (437)
.. +..++..+ .+.|+|+.|+|+. . |++++.|++|++||+++- +....+.+|.+.++.++++|||.+.++|
T Consensus 136 g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~----~l~~~~~gh~~~v~t~~vSpDGslcasG 210 (315)
T KOG0279|consen 136 GV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNC----QLRTTFIGHSGYVNTVTVSPDGSLCASG 210 (315)
T ss_pred cc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCc----chhhccccccccEEEEEECCCCCEEecC
Confidence 54 44555433 7899999999985 3 999999999999988653 4667788999999999999999999999
Q ss_pred eCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecC---------C
Q 013717 316 ACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEG---------H 385 (437)
Q Consensus 316 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~---------h 385 (437)
+.||.+.+||++.++.... ..|...|.+++|.|+ +.++...+..|+|||+.+.. ++..+.. .
T Consensus 211 gkdg~~~LwdL~~~k~lys-----l~a~~~v~sl~fspnrywL~~at~~sIkIwdl~~~~---~v~~l~~d~~g~s~~~~ 282 (315)
T KOG0279|consen 211 GKDGEAMLWDLNEGKNLYS-----LEAFDIVNSLCFSPNRYWLCAATATSIKIWDLESKA---VVEELKLDGIGPSSKAG 282 (315)
T ss_pred CCCceEEEEEccCCceeEe-----ccCCCeEeeEEecCCceeEeeccCCceEEEeccchh---hhhhccccccccccccC
Confidence 9999999999998875332 357889999999998 55555556669999999876 3333321 1
Q ss_pred CCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717 386 TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 386 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
.-.-.+++|++++. .|++|-.|+.|++|.+..
T Consensus 283 ~~~clslaws~dG~-----tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 283 DPICLSLAWSADGQ-----TLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred CcEEEEEEEcCCCc-----EEEeeecCCcEEEEEeec
Confidence 22356788999884 799999999999999853
No 8
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.2e-40 Score=294.32 Aligned_cols=352 Identities=22% Similarity=0.378 Sum_probs=275.8
Q ss_pred ccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee----CCEEEEEecC-eEEEEeCCCCceeee
Q 013717 59 NLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH----HNFLYAASSH-EINVYDRTGTTWTSI 132 (437)
Q Consensus 59 ~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~----~~~l~s~~~d-~v~vwd~~~~~~~~~ 132 (437)
...+.|.|..-.+++++.||.+.+||... ..+.+.| ||.+.|.++.|+ ...|++|..| .|++||+.+... ++
T Consensus 108 vi~ma~~~~g~LlAtggaD~~v~VWdi~~-~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t-cl 185 (775)
T KOG0319|consen 108 VITMAFDPTGTLLATGGADGRVKVWDIKN-GYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT-CL 185 (775)
T ss_pred eEEEEEcCCCceEEeccccceEEEEEeeC-CEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch-HH
Confidence 34678999999999999999999999987 5677777 999999999999 4568899999 999999997422 34
Q ss_pred eccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccc-------------------------
Q 013717 133 NTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVN------------------------- 185 (437)
Q Consensus 133 ~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~------------------------- 185 (437)
..+ ..|...|++++|.++. +++++.|..+.+||+.+.+............
T Consensus 186 ~~~---~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~ 262 (775)
T KOG0319|consen 186 HTM---ILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVV 262 (775)
T ss_pred HHH---HhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceE
Confidence 444 6799999999999665 9999999999999986543222211000000
Q ss_pred -------------------------------cceeeecCCCCeeEE---------------------------------e
Q 013717 186 -------------------------------DRLLRFMLPNSYVTV---------------------------------R 201 (437)
Q Consensus 186 -------------------------------~~~~~~~~~~~~~~~---------------------------------~ 201 (437)
.........+..+.+ .
T Consensus 263 ~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVA 342 (775)
T KOG0319|consen 263 QYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVA 342 (775)
T ss_pred EEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEE
Confidence 000000000110000 0
Q ss_pred ------------eccceeeecCCCcEEEEE-eCC-CeEEEEECCCcEEEEECCCcc----eEEEeecccccEEEEEEecC
Q 013717 202 ------------RHKKKLWIEHGDAVTGLA-VNN-GLIYSVSWDKSLKIWRASDLR----CLESIKAHEDAVNAVAVSAG 263 (437)
Q Consensus 202 ------------~~~~~~~~~~~~~v~~~~-~~~-~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~ 263 (437)
.....++.+|...|.++. +.. .+|++|+.|.++++|.++++. ++....+|...|.+++++..
T Consensus 343 TNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~ 422 (775)
T KOG0319|consen 343 TNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKL 422 (775)
T ss_pred eCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeeccc
Confidence 001145578999999998 444 599999999999999884432 34455689999999999877
Q ss_pred Ce--EEEEeCCCeEEEecCCCCccccee-eE----EeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEe
Q 013717 264 GT--VYTGSADRKIRVWAKPFNEKRHAL-IA----TLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVT 336 (437)
Q Consensus 264 ~~--l~~~~~dg~v~iwd~~~~~~~~~~-~~----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~ 336 (437)
+. |++++.|+++++|++........+ .. ....|...|++++++|+.+++++|+.|.+.+||+++... +.
T Consensus 423 ~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~----l~ 498 (775)
T KOG0319|consen 423 GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR----LL 498 (775)
T ss_pred CccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCce----EE
Confidence 76 999999999999999763322221 11 335699999999999999999999999999999997443 77
Q ss_pred eeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCc
Q 013717 337 GALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGE 414 (437)
Q Consensus 337 ~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~ 414 (437)
+.+.||...+.++.|.+. .+++++.|++|+||.+.+.. |++++.||...|..+.|..++. .|++++.||-
T Consensus 499 ~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS---ClkT~eGH~~aVlra~F~~~~~-----qliS~~adGl 570 (775)
T KOG0319|consen 499 GVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS---CLKTFEGHTSAVLRASFIRNGK-----QLISAGADGL 570 (775)
T ss_pred EEeeCCccceEEEEeccccceeEeccCCceEEEEEeccce---eeeeecCccceeEeeeeeeCCc-----EEEeccCCCc
Confidence 889999999999999977 99999999999999999866 9999999999999999999885 5999999999
Q ss_pred EEEEeeccCCCCC
Q 013717 415 IRAWQVSVSCPNS 427 (437)
Q Consensus 415 i~iw~~~~~~~~~ 427 (437)
|++|++++++-..
T Consensus 571 iKlWnikt~eC~~ 583 (775)
T KOG0319|consen 571 IKLWNIKTNECEM 583 (775)
T ss_pred EEEEeccchhhhh
Confidence 9999999886543
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.4e-39 Score=251.94 Aligned_cols=276 Identities=22% Similarity=0.354 Sum_probs=230.2
Q ss_pred CEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCcccc
Q 013717 109 NFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVND 186 (437)
Q Consensus 109 ~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 186 (437)
-+|++++.| +||+|...+| .+.+++ ....+.|+.+...|++ .++++..-.||+||++++....
T Consensus 11 viLvsA~YDhTIRfWqa~tG--~C~rTi---qh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~P---------- 75 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTG--ICSRTI---QHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNP---------- 75 (311)
T ss_pred eEEEeccCcceeeeeehhcC--eEEEEE---ecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCc----------
Confidence 479999999 9999999995 566666 2345789999999887 4444456789999999876422
Q ss_pred ceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCC
Q 013717 187 RLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGG 264 (437)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~ 264 (437)
...+.+|...|+++.|.. +.+++|++||+++|||++...+.+.++ +..+|+++..+|+.
T Consensus 76 ------------------v~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ 136 (311)
T KOG0315|consen 76 ------------------VATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ 136 (311)
T ss_pred ------------------eeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc
Confidence 234467999999999976 999999999999999999977766665 77999999999988
Q ss_pred e-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCc--cceEEeeeecc
Q 013717 265 T-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSA--NHMVVTGALRG 341 (437)
Q Consensus 265 ~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~ 341 (437)
. |++|..+|.|++||+..+....+++ ......|.++...|||.+++++...|..++|++-... ........++.
T Consensus 137 teLis~dqsg~irvWDl~~~~c~~~li---Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a 213 (311)
T KOG0315|consen 137 TELISGDQSGNIRVWDLGENSCTHELI---PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA 213 (311)
T ss_pred ceEEeecCCCcEEEEEccCCccccccC---CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec
Confidence 7 9999999999999998765333332 2345789999999999999999999999999986532 33445566888
Q ss_pred cccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEe
Q 013717 342 HGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ 419 (437)
Q Consensus 342 ~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~ 419 (437)
|.+.++.+.++++ +|++++.|.+++||+.++. ++.-..+.+|...+.+.+|+.++ +||+||+.|+.+|+|+
T Consensus 214 h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg-----~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 214 HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSADG-----EYLVTASSDHTARLWD 286 (311)
T ss_pred ccceEEEEEECCCCcEEEeecCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccCc-----cEEEecCCCCceeecc
Confidence 9999988877766 9999999999999999975 45778889999999999999998 4999999999999999
Q ss_pred eccCCCCCC
Q 013717 420 VSVSCPNSS 428 (437)
Q Consensus 420 ~~~~~~~~~ 428 (437)
+..++...+
T Consensus 287 ~~~~k~v~q 295 (311)
T KOG0315|consen 287 LSAGKEVRQ 295 (311)
T ss_pred cccCceeee
Confidence 999985443
No 10
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.6e-38 Score=269.28 Aligned_cols=349 Identities=24% Similarity=0.356 Sum_probs=275.1
Q ss_pred ccccceeeccccc-cccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceee
Q 013717 57 QSNLSLQTLPSVP-SLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTS 131 (437)
Q Consensus 57 ~~~~~~~~~~~~~-~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~ 131 (437)
+...+..|-|+.| .+++++.|+++.+++-.+ .+...++ .|..-|.|+.|+ |.++|+++.| .|.+||-.++ +.
T Consensus 148 r~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP-FKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg--e~ 224 (603)
T KOG0318|consen 148 RRINSVDFKPSRPFRIATGSDDNTVAFFEGPP-FKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG--EK 224 (603)
T ss_pred eeEeeeeccCCCceEEEeccCCCeEEEeeCCC-eeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc--cE
Confidence 3445677878777 588999999999997544 5666677 999999999999 9999999999 9999999995 55
Q ss_pred eeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecC-CCCeeEEe-------
Q 013717 132 INTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFML-PNSYVTVR------- 201 (437)
Q Consensus 132 ~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------- 201 (437)
+..+....+|.+.|.+|.|+||. +++++.|.+++|||+.+.+....+..-....+....... .+..+.+.
T Consensus 225 vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ 304 (603)
T KOG0318|consen 225 VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINY 304 (603)
T ss_pred EEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEE
Confidence 66665567899999999999876 999999999999999998766655443333333332222 22222221
Q ss_pred -----eccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceE-----------EE----------------
Q 013717 202 -----RHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCL-----------ES---------------- 247 (437)
Q Consensus 202 -----~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~-----------~~---------------- 247 (437)
....+++.+|...|+++..++ .+|++|+.||.|.-||..++..- ..
T Consensus 305 ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd 384 (603)
T KOG0318|consen 305 LNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDD 384 (603)
T ss_pred ecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCC
Confidence 113356789999999999998 89999999999999998642110 00
Q ss_pred ----------------------------------------------eec--------ccccEEEEEEecCCe-EEEEeCC
Q 013717 248 ----------------------------------------------IKA--------HEDAVNAVAVSAGGT-VYTGSAD 272 (437)
Q Consensus 248 ----------------------------------------------~~~--------~~~~v~~~~~~~~~~-l~~~~~d 272 (437)
++. ..-...+++++|++. +++|+.|
T Consensus 385 ~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~D 464 (603)
T KOG0318|consen 385 TLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQD 464 (603)
T ss_pred eEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEeccc
Confidence 000 011345788899998 9999999
Q ss_pred CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee
Q 013717 273 RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV 352 (437)
Q Consensus 273 g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 352 (437)
|.|++|.+..... ........|.++|++++|+||+.+|+++...+.+.+||+.+.+. ....+.-|...|.|++|+
T Consensus 465 gkvhvysl~g~~l--~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~---~~~~w~FHtakI~~~aWs 539 (603)
T KOG0318|consen 465 GKVHVYSLSGDEL--KEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV---KTNRWAFHTAKINCVAWS 539 (603)
T ss_pred ceEEEEEecCCcc--cceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce---ecceeeeeeeeEEEEEeC
Confidence 9999999875442 23334567999999999999999999999999999999987654 333455699999999999
Q ss_pred CC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717 353 AG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 353 ~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
++ ++|+|+.|..|.||+++... +.+....+|...|+.+.|..+. .|++.|.|..|++|++.
T Consensus 540 P~n~~vATGSlDt~Viiysv~kP~--~~i~iknAH~~gVn~v~wlde~------tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 540 PNNKLVATGSLDTNVIIYSVKKPA--KHIIIKNAHLGGVNSVAWLDES------TVVSSGQDANIKVWNVT 602 (603)
T ss_pred CCceEEEeccccceEEEEEccChh--hheEeccccccCceeEEEecCc------eEEeccCcceeEEeccc
Confidence 88 99999999999999999866 3477778899999999999876 69999999999999875
No 11
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=3.5e-39 Score=263.60 Aligned_cols=294 Identities=19% Similarity=0.323 Sum_probs=252.8
Q ss_pred Ccceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEec
Q 013717 87 HLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQ 160 (437)
Q Consensus 87 ~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~ 160 (437)
..+++.+.+ ||.+.|.|+++. ++++++|+.| +|+|||+.++.++. ++ .+|...|..+++++-. +++++.
T Consensus 139 apwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl--tl---tGhi~~vr~vavS~rHpYlFs~ge 213 (460)
T KOG0285|consen 139 APWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL--TL---TGHIETVRGVAVSKRHPYLFSAGE 213 (460)
T ss_pred CcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE--ee---cchhheeeeeeecccCceEEEecC
Confidence 356777778 999999999999 8999999999 99999999975444 44 4799999999999765 999999
Q ss_pred CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEE
Q 013717 161 DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWR 238 (437)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd 238 (437)
|+.|+.||++..+.++.+. +|-..|.|++.+| +.|++|+.|.++++||
T Consensus 214 dk~VKCwDLe~nkvIR~Yh------------------------------GHlS~V~~L~lhPTldvl~t~grDst~RvWD 263 (460)
T KOG0285|consen 214 DKQVKCWDLEYNKVIRHYH------------------------------GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWD 263 (460)
T ss_pred CCeeEEEechhhhhHHHhc------------------------------cccceeEEEeccccceeEEecCCcceEEEee
Confidence 9999999999887666554 7999999999999 9999999999999999
Q ss_pred CCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC
Q 013717 239 ASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC 317 (437)
Q Consensus 239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 317 (437)
+++...+..+.+|..+|..+.+.|-+- +++|+.|++|++||++.+. ....+..|...+.+++.+|....+++++.
T Consensus 264 iRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk----t~~tlt~hkksvral~lhP~e~~fASas~ 339 (460)
T KOG0285|consen 264 IRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK----TMITLTHHKKSVRALCLHPKENLFASASP 339 (460)
T ss_pred ecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCc----eeEeeecccceeeEEecCCchhhhhccCC
Confidence 999999999999999999999988554 9999999999999998664 56677789999999999999999999988
Q ss_pred CCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecC-----CCCCeeE
Q 013717 318 DRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEG-----HTKPVKS 391 (437)
Q Consensus 318 dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----h~~~v~~ 391 (437)
|. |+-|++..+. +...+.+|..-+.+++.+.+ ++++|++.|.+.+||.+++..++...+... ....|.+
T Consensus 340 dn-ik~w~~p~g~----f~~nlsgh~~iintl~~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~a 414 (460)
T KOG0285|consen 340 DN-IKQWKLPEGE----FLQNLSGHNAIINTLSVNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFA 414 (460)
T ss_pred cc-ceeccCCccc----hhhccccccceeeeeeeccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeE
Confidence 75 9999997765 66668899999999998766 999999999999999999886665544432 2457888
Q ss_pred EEEEccCCCCceEEEEEecCCCcEEEEeeccCC-CCCCC
Q 013717 392 LTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC-PNSSP 429 (437)
Q Consensus 392 l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~-~~~~~ 429 (437)
.+|...+. .|++|..|.+|++|+-+... +...|
T Consensus 415 s~fDktg~-----rlit~eadKtIk~~keDe~aT~EthP 448 (460)
T KOG0285|consen 415 SCFDKTGS-----RLITGEADKTIKMYKEDEHATEETHP 448 (460)
T ss_pred EeecccCc-----eEEeccCCcceEEEecccccCcccCC
Confidence 88888775 69999999999999876543 34444
No 12
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=3.1e-38 Score=248.74 Aligned_cols=288 Identities=22% Similarity=0.372 Sum_probs=240.2
Q ss_pred eeeec-CccCCeEEEEee---CCEEEEEecC-eEEEEeCCC-CceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCC
Q 013717 91 NSVQL-GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTG-TTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDC 162 (437)
Q Consensus 91 ~~~~~-~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~-~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg 162 (437)
..+.+ +|.+.|..++|+ |..||+++.| .|++|+... ..+.+...+. .+|+..|++++|+|.+ |++++.|.
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld--~~hkrsVRsvAwsp~g~~La~aSFD~ 83 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLD--DGHKRSVRSVAWSPHGRYLASASFDA 83 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEecc--ccchheeeeeeecCCCcEEEEeeccc
Confidence 44556 999999999999 4489999999 999999984 3455555443 5799999999999765 99999999
Q ss_pred eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECC
Q 013717 163 KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRAS 240 (437)
Q Consensus 163 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~ 240 (437)
++.||.-..++... ...+.+|+.+|.|++|++ ++||+++.|+.|-||.+.
T Consensus 84 t~~Iw~k~~~efec----------------------------v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~d 135 (312)
T KOG0645|consen 84 TVVIWKKEDGEFEC----------------------------VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEID 135 (312)
T ss_pred eEEEeecCCCceeE----------------------------EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEec
Confidence 99999877554221 233468999999999998 999999999999999987
Q ss_pred C---cceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe
Q 013717 241 D---LRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA 316 (437)
Q Consensus 241 ~---~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (437)
. .++...++.|...|..+.|+|... |++++.|++|++|+-.. ...+.+..++.+|...|.+++|++.|..|++++
T Consensus 136 eddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s 214 (312)
T KOG0645|consen 136 EDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS 214 (312)
T ss_pred CCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEEEec
Confidence 4 367788889999999999999877 99999999999998653 567889999999999999999999999999999
Q ss_pred CCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCC---CCeeeee-eecCCCCCeeEE
Q 013717 317 CDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSD---GRFGCLA-VLEGHTKPVKSL 392 (437)
Q Consensus 317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~-~~~~h~~~v~~l 392 (437)
.|++++||-.... + ...|...+..+.+....|++++.|+.|++|..... ..+..+. .-..|...|+++
T Consensus 215 dD~tv~Iw~~~~~-----~---~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV 286 (312)
T KOG0645|consen 215 DDGTVSIWRLYTD-----L---SGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSV 286 (312)
T ss_pred CCcceEeeeeccC-----c---chhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceE
Confidence 9999999986522 1 23377888889999779999999999999987643 1223333 445799999999
Q ss_pred EEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717 393 TAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 393 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
.|.|.... +|++|++||.|++|.+.
T Consensus 287 ~w~p~~~~----~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 287 QWNPKVSN----RLASGGDDGIVNFWELE 311 (312)
T ss_pred EEcCCCCC----ceeecCCCceEEEEEec
Confidence 99995443 79999999999999985
No 13
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.3e-38 Score=269.06 Aligned_cols=298 Identities=22% Similarity=0.273 Sum_probs=249.3
Q ss_pred eeecCccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCceeeee--ccc-------cCCCCcccEEEEEEeCCe--EE
Q 013717 92 SVQLGHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTWTSIN--TFN-------DNDSSSGSVKSVTFCDGK--IF 156 (437)
Q Consensus 92 ~~~~~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~--~~~-------~~~~h~~~v~~l~~~~~~--l~ 156 (437)
...+.|..+|.+.+|+ ...|++|+.+ ..++|++......... .++ ........|++++|+.++ |+
T Consensus 172 ~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~La 251 (524)
T KOG0273|consen 172 AKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLA 251 (524)
T ss_pred eeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEE
Confidence 3444899999999999 4489999999 9999999752111111 111 001234689999999554 99
Q ss_pred EEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcE
Q 013717 157 TAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSL 234 (437)
Q Consensus 157 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i 234 (437)
+|+.||.+++|+....... .+ ..|.++|.++.|+. .+|++++.||++
T Consensus 252 tG~~~G~~riw~~~G~l~~-tl------------------------------~~HkgPI~slKWnk~G~yilS~~vD~tt 300 (524)
T KOG0273|consen 252 TGSEDGEARIWNKDGNLIS-TL------------------------------GQHKGPIFSLKWNKKGTYILSGGVDGTT 300 (524)
T ss_pred EeecCcEEEEEecCchhhh-hh------------------------------hccCCceEEEEEcCCCCEEEeccCCccE
Confidence 9999999999998755322 22 24999999999998 899999999999
Q ss_pred EEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEE
Q 013717 235 KIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFS 314 (437)
Q Consensus 235 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 314 (437)
.+||..++...+.+..|..+-..+.|-.+..+++.+.||.|+++.+..+ .++.++.+|.+.|.++.|+|.|.+|++
T Consensus 301 ilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~----~P~~t~~GH~g~V~alk~n~tg~LLaS 376 (524)
T KOG0273|consen 301 ILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGED----RPVKTFIGHHGEVNALKWNPTGSLLAS 376 (524)
T ss_pred EEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCC----CcceeeecccCceEEEEECCCCceEEE
Confidence 9999999999999998888878899988888999999999999987654 377888899999999999999999999
Q ss_pred EeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-----------EEEEEeCCCcEEEeeCCCCCCeeeeeeec
Q 013717 315 GACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-----------LLMSGSADRTVRIWQRGSDGRFGCLAVLE 383 (437)
Q Consensus 315 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 383 (437)
++.|++++||...... ....+.+|...|..+.|+|. .+++++.|++|++||+..+. ++..+.
T Consensus 377 ~SdD~TlkiWs~~~~~----~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv---~i~~f~ 449 (524)
T KOG0273|consen 377 CSDDGTLKIWSMGQSN----SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV---PIHTLM 449 (524)
T ss_pred ecCCCeeEeeecCCCc----chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc---eeEeec
Confidence 9999999999986654 55667889999988888743 89999999999999999987 899999
Q ss_pred CCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCCCC-----CeeccccC
Q 013717 384 GHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSS-----PLNLQKWN 436 (437)
Q Consensus 384 ~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~-----~~~~~~w~ 436 (437)
.|..+|.+++|+|++ +|+++|+.||.|.+|++++++.... .+..++||
T Consensus 450 kH~~pVysvafS~~g-----~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn 502 (524)
T KOG0273|consen 450 KHQEPVYSVAFSPNG-----RYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWN 502 (524)
T ss_pred cCCCceEEEEecCCC-----cEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEc
Confidence 999999999999998 4899999999999999999986443 33556666
No 14
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.6e-40 Score=270.52 Aligned_cols=278 Identities=24% Similarity=0.422 Sum_probs=242.2
Q ss_pred CccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcc
Q 013717 96 GHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKH 174 (437)
Q Consensus 96 ~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~ 174 (437)
...+.|+|+.+..+.+++|..| +|+|||.++ ..+...+ .+|++.|.|+.|...-+++|+.|.+|++||+++++.
T Consensus 195 e~skgVYClQYDD~kiVSGlrDnTikiWD~n~--~~c~~~L---~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~ 269 (499)
T KOG0281|consen 195 ENSKGVYCLQYDDEKIVSGLRDNTIKIWDKNS--LECLKIL---TGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEP 269 (499)
T ss_pred ccCCceEEEEecchhhhcccccCceEEecccc--HHHHHhh---hcCCCcEEeeeccceEEEecCCCceEEEEeccCCch
Confidence 3568899999999999999999 999999998 5556555 789999999999988899999999999999999986
Q ss_pred cccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcc---eEEEeecc
Q 013717 175 HKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLR---CLESIKAH 251 (437)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~ 251 (437)
+..+ .+|...|..+.|+++++++++.|.++.+||+.... +...+.+|
T Consensus 270 l~tl------------------------------ihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGH 319 (499)
T KOG0281|consen 270 LNTL------------------------------IHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGH 319 (499)
T ss_pred hhHH------------------------------hhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhh
Confidence 6554 36999999999999999999999999999997654 23445689
Q ss_pred cccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCcc
Q 013717 252 EDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSAN 331 (437)
Q Consensus 252 ~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 331 (437)
...|+.+.|+. ..+++++.|.+|++|++.+. +.++++.+|...|.|+.+. |+++++|+.|.+|++||+..+.
T Consensus 320 rAaVNvVdfd~-kyIVsASgDRTikvW~~st~----efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~- 391 (499)
T KOG0281|consen 320 RAAVNVVDFDD-KYIVSASGDRTIKVWSTSTC----EFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGA- 391 (499)
T ss_pred hhheeeecccc-ceEEEecCCceEEEEeccce----eeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccH-
Confidence 99999999962 25999999999999976544 5899999999999999885 8899999999999999999887
Q ss_pred ceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCe------eeeeeecCCCCCeeEEEEEccCCCCceEE
Q 013717 332 HMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRF------GCLAVLEGHTKPVKSLTAVTEEGQNGVVS 405 (437)
Q Consensus 332 ~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 405 (437)
+...+.||..-|.|+.|+...+++|+.||+|+|||+..+... .|+..+..|.+.|..+.|..- .
T Consensus 392 ---cLRvLeGHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f-------q 461 (499)
T KOG0281|consen 392 ---CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF-------Q 461 (499)
T ss_pred ---HHHHHhchHHhhhheeecCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecce-------E
Confidence 445578999999999999999999999999999999876532 266778889999999999764 5
Q ss_pred EEEecCCCcEEEEeeccCCCC
Q 013717 406 VFSGSLDGEIRAWQVSVSCPN 426 (437)
Q Consensus 406 l~s~~~dg~i~iw~~~~~~~~ 426 (437)
+++++-|.+|.|||+..+.+.
T Consensus 462 IvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 462 IISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred EEeccCCCeEEEEEcCCCCcc
Confidence 999999999999999877653
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.4e-38 Score=250.49 Aligned_cols=274 Identities=21% Similarity=0.316 Sum_probs=233.7
Q ss_pred cccceeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCcee-eee
Q 013717 58 SNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWT-SIN 133 (437)
Q Consensus 58 ~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~-~~~ 133 (437)
....+...+..+.+++.|.||.+.+||.-...+....---...|..+||+ |+++|.|+-| ...||++.+.+.+ ...
T Consensus 57 Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~ 136 (343)
T KOG0286|consen 57 KIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVR 136 (343)
T ss_pred ceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccce
Confidence 44577888999999999999999999986654444433667899999999 9999999999 9999999864111 112
Q ss_pred ccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC
Q 013717 134 TFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG 212 (437)
Q Consensus 134 ~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (437)
.-..+.+|.+.+.|+.|.++. |+|++.|.+..+||+++++....+ .+|.
T Consensus 137 v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f------------------------------~GH~ 186 (343)
T KOG0286|consen 137 VSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVF------------------------------HGHT 186 (343)
T ss_pred eeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEe------------------------------cCCc
Confidence 222237899999999999776 999999999999999999865544 4799
Q ss_pred CcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccce
Q 013717 213 DAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHA 288 (437)
Q Consensus 213 ~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~ 288 (437)
+.|.++.+.| +.+++|+-|+..++||++.+.+.++|.+|+..|+++.|.|+|. |++|+.|++.++||++.+.
T Consensus 187 gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~---- 262 (343)
T KOG0286|consen 187 GDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQ---- 262 (343)
T ss_pred ccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCc----
Confidence 9999999988 9999999999999999999999999999999999999999999 9999999999999998765
Q ss_pred eeEEee--CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCc
Q 013717 289 LIATLE--KHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRT 364 (437)
Q Consensus 289 ~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~ 364 (437)
.+..+. .-..+|++++|+..|++|++|..|.++.+||.-.++ ....+.+|...|.|+...++ .+++|+.|..
T Consensus 263 ~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e----~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~ 338 (343)
T KOG0286|consen 263 ELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGE----RVGVLAGHENRVSCLGVSPDGMAVATGSWDST 338 (343)
T ss_pred EEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccc----eEEEeeccCCeeEEEEECCCCcEEEecchhHh
Confidence 233333 344689999999999999999999999999996655 55667899999999887766 9999999999
Q ss_pred EEEee
Q 013717 365 VRIWQ 369 (437)
Q Consensus 365 i~iwd 369 (437)
+|||.
T Consensus 339 lriW~ 343 (343)
T KOG0286|consen 339 LRIWA 343 (343)
T ss_pred eeecC
Confidence 99994
No 16
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.4e-38 Score=251.40 Aligned_cols=284 Identities=26% Similarity=0.351 Sum_probs=237.5
Q ss_pred eeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCe
Q 013717 90 INSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCK 163 (437)
Q Consensus 90 ~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~ 163 (437)
.++..+ ||.+.|+.+.|+ |.+||+|+.| .|.+|+.... .+....+ .+|+++|..+.|..+. +++++.|.+
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd-ceN~~~l---kgHsgAVM~l~~~~d~s~i~S~gtDk~ 113 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD-CENFWVL---KGHSGAVMELHGMRDGSHILSCGTDKT 113 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc-ccceeee---ccccceeEeeeeccCCCEEEEecCCce
Confidence 344455 999999999999 9999999999 9999997653 3333333 6899999999999655 999999999
Q ss_pred EEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECC
Q 013717 164 IRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRAS 240 (437)
Q Consensus 164 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~ 240 (437)
|+.||.++++.....+ +|..-|+.+.... .++.+|+.||++++||++
T Consensus 114 v~~wD~~tG~~~rk~k------------------------------~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R 163 (338)
T KOG0265|consen 114 VRGWDAETGKRIRKHK------------------------------GHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIR 163 (338)
T ss_pred EEEEecccceeeehhc------------------------------cccceeeecCccccCCeEEEecCCCceEEEEeec
Confidence 9999999998666554 6888888887543 788999999999999999
Q ss_pred CcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC
Q 013717 241 DLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR 319 (437)
Q Consensus 241 ~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 319 (437)
+.+.++++. .+-+++++.|..++. +++|+-|+.|++||++.+. ....+.+|..+|+.+..+|+|.++.+-+.|.
T Consensus 164 ~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d----~~~~lsGh~DtIt~lsls~~gs~llsnsMd~ 238 (338)
T KOG0265|consen 164 KKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKND----GLYTLSGHADTITGLSLSRYGSFLLSNSMDN 238 (338)
T ss_pred ccchhhccc-cceeEEEEEecccccceeeccccCceeeeccccCc----ceEEeecccCceeeEEeccCCCccccccccc
Confidence 998888875 566799999998887 9999999999999997664 6788899999999999999999999999999
Q ss_pred cEEEEECCCCccceEEeeeecccc----cceEEEEeeC--CEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEE
Q 013717 320 SILVWDREDSANHMVVTGALRGHG----KAILCLINVA--GLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLT 393 (437)
Q Consensus 320 ~i~i~d~~~~~~~~~~~~~~~~~~----~~i~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~ 393 (437)
++++||++...........+.+|. ...+..+|++ ..+.+|+.|..+++||..... .+..+.||.+.|++++
T Consensus 239 tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~---~lyklpGh~gsvn~~~ 315 (338)
T KOG0265|consen 239 TVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRR---ILYKLPGHYGSVNEVD 315 (338)
T ss_pred eEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccccc---EEEEcCCcceeEEEee
Confidence 999999986443333333344432 2334555554 499999999999999998766 8999999999999999
Q ss_pred EEccCCCCceEEEEEecCCCcEEEEee
Q 013717 394 AVTEEGQNGVVSVFSGSLDGEIRAWQV 420 (437)
Q Consensus 394 ~~~~~~~~~~~~l~s~~~dg~i~iw~~ 420 (437)
|+|..+ +|.+++.|.+|++=++
T Consensus 316 Fhp~e~-----iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 316 FHPTEP-----IILSCSSDKTIYLGEI 337 (338)
T ss_pred ecCCCc-----EEEEeccCceeEeecc
Confidence 999986 8999999999987543
No 17
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2.7e-39 Score=263.39 Aligned_cols=267 Identities=23% Similarity=0.372 Sum_probs=234.0
Q ss_pred ccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCccc
Q 013717 67 SVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGS 144 (437)
Q Consensus 67 ~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~ 144 (437)
....++++..|.+|.+||.+. ..+...+ ||++.|.|+.|..+.+++|+.| +|+|||++++ +.+.++ -+|...
T Consensus 206 DD~kiVSGlrDnTikiWD~n~-~~c~~~L~GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tg--e~l~tl---ihHcea 279 (499)
T KOG0281|consen 206 DDEKIVSGLRDNTIKIWDKNS-LECLKILTGHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTG--EPLNTL---IHHCEA 279 (499)
T ss_pred cchhhhcccccCceEEecccc-HHHHHhhhcCCCcEEeeeccceEEEecCCCceEEEEeccCC--chhhHH---hhhcce
Confidence 556789999999999999876 5666677 9999999999999999999999 9999999995 455555 579999
Q ss_pred EEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCe
Q 013717 145 VKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGL 224 (437)
Q Consensus 145 v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 224 (437)
|..+.|+++.+++++.|.+|.+||+.......... ++.||...|+.+.|+.++
T Consensus 280 VLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rr---------------------------VLvGHrAaVNvVdfd~ky 332 (499)
T KOG0281|consen 280 VLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRR---------------------------VLVGHRAAVNVVDFDDKY 332 (499)
T ss_pred eEEEEEeCCEEEEecCCceeEEEeccCchHHHHHH---------------------------HHhhhhhheeeeccccce
Confidence 99999999999999999999999998775443333 335899999999999999
Q ss_pred EEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEE
Q 013717 225 IYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNAL 303 (437)
Q Consensus 225 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 303 (437)
+++++.|.+|++|++.+++++.++.+|...|-|+.+ .++ +++|+.|.+|++||+..+ .+++.+++|+.-|.++
T Consensus 333 IVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G----~cLRvLeGHEeLvRci 406 (499)
T KOG0281|consen 333 IVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG----ACLRVLEGHEELVRCI 406 (499)
T ss_pred EEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc----HHHHHHhchHHhhhhe
Confidence 999999999999999999999999999999999987 466 899999999999988765 4888999999999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCccceEE-----eeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCC
Q 013717 304 ALSDDGTVLFSGACDRSILVWDREDSANHMVV-----TGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 304 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 374 (437)
.|. .+.+++|..||+|+|||+..+..+... ...+..|.+.|..+.|+.-.+++++.|.+|.|||...+.
T Consensus 407 RFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 407 RFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred eec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecceEEEeccCCCeEEEEEcCCCC
Confidence 996 669999999999999999876544322 223457899999999999999999999999999998755
No 18
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-37 Score=277.22 Aligned_cols=314 Identities=21% Similarity=0.353 Sum_probs=263.7
Q ss_pred ceeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEeeC---CEEEEEecC-eEEEEeCCCCceeeeeccc
Q 013717 61 SLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVHH---NFLYAASSH-EINVYDRTGTTWTSINTFN 136 (437)
Q Consensus 61 ~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~~---~~l~s~~~d-~v~vwd~~~~~~~~~~~~~ 136 (437)
.+...++...++.++.+.++.+++.+......+..|.++.|..+.|-| ++||.++.. .+|+|+..+...+ .
T Consensus 286 ~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~---i-- 360 (775)
T KOG0319|consen 286 HLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ---I-- 360 (775)
T ss_pred cceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE---E--
Confidence 445566777888889999999998877554444449999999999985 999999999 9999999885444 1
Q ss_pred cCCCCcccEEEEE-EeCC-eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCc
Q 013717 137 DNDSSSGSVKSVT-FCDG-KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDA 214 (437)
Q Consensus 137 ~~~~h~~~v~~l~-~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (437)
..+|...|.++. |+.+ .|++|+.|.++++|.++.+....... ....+|...
T Consensus 361 -i~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~--------------------------a~~~gH~~s 413 (775)
T KOG0319|consen 361 -IPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCV--------------------------AQANGHTNS 413 (775)
T ss_pred -EeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhh--------------------------hhhcccccc
Confidence 258999999999 4444 59999999999999995443221111 111479999
Q ss_pred EEEEEeCC---CeEEEEECCCcEEEEECCCcce-----E----EEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCC
Q 013717 215 VTGLAVNN---GLIYSVSWDKSLKIWRASDLRC-----L----ESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKP 281 (437)
Q Consensus 215 v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~-----~----~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~ 281 (437)
|.+++++. .+|++++.|+++++|++...+. + .+...|...|++++++|+.+ +++|+.|.+.+||++.
T Consensus 414 vgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le 493 (775)
T KOG0319|consen 414 VGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE 493 (775)
T ss_pred cceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc
Confidence 99999976 8999999999999999976221 1 12237999999999999999 9999999999999886
Q ss_pred CCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEE
Q 013717 282 FNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSG 359 (437)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~ 359 (437)
.......+.+|...|.++.|+|..+.+++++.|++|+||.+.+.. ..+.+.||...|....|- +..|+++
T Consensus 494 ----~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS----ClkT~eGH~~aVlra~F~~~~~qliS~ 565 (775)
T KOG0319|consen 494 ----QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS----CLKTFEGHTSAVLRASFIRNGKQLISA 565 (775)
T ss_pred ----CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccce----eeeeecCccceeEeeeeeeCCcEEEec
Confidence 336888999999999999999999999999999999999998776 677789999999888775 5599999
Q ss_pred eCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717 360 SADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 360 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
+.||-|++|+++++. |+.++.+|.+.|.+++.++... +++||+.||.|.+|.=.+
T Consensus 566 ~adGliKlWnikt~e---C~~tlD~H~DrvWaL~~~~~~~-----~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 566 GADGLIKLWNIKTNE---CEMTLDAHNDRVWALSVSPLLD-----MFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred cCCCcEEEEeccchh---hhhhhhhccceeEEEeecCccc-----eeEecCCCeEEEEeecCc
Confidence 999999999999987 9999999999999999999885 799999999999997433
No 19
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.1e-36 Score=267.82 Aligned_cols=352 Identities=19% Similarity=0.287 Sum_probs=261.4
Q ss_pred cceeeccccccccccCCCceeEEecCCCcc-------eeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCc
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLC-------INSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTT 128 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~-------~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~ 128 (437)
.++.|+|+...++ ++....+.+|...... .+.+++ ||.+.|.++.|+ .++|++|+.| .+++|+++..+
T Consensus 100 ~~i~fSPng~~fa-v~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k 178 (893)
T KOG0291|consen 100 GAIKFSPNGKFFA-VGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNK 178 (893)
T ss_pred ceEEECCCCcEEE-EEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecccc
Confidence 5788888888777 4555678888773322 344555 999999999999 8999999999 99999999843
Q ss_pred eeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCC--ccccc---------ccc---------------
Q 013717 129 WTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPT--KHHKL---------KTT--------------- 180 (437)
Q Consensus 129 ~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~--~~~~~---------~~~--------------- 180 (437)
......+ .+|...|.+.-|..+. +++.+.||.+.+|..... ..... ...
T Consensus 179 ~~~~~~l---~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k 255 (893)
T KOG0291|consen 179 NLFTYAL---NGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYK 255 (893)
T ss_pred ccceEec---cCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEE
Confidence 3223333 7899999999998554 999999999999987621 00000 000
Q ss_pred -----cCcc-ccceeeecCCCC-eeEEeeccc-------------eeeecCCCcEEEEEeCC--CeEEEEECC-CcEEEE
Q 013717 181 -----LPTV-NDRLLRFMLPNS-YVTVRRHKK-------------KLWIEHGDAVTGLAVNN--GLIYSVSWD-KSLKIW 237 (437)
Q Consensus 181 -----~~~~-~~~~~~~~~~~~-~~~~~~~~~-------------~~~~~~~~~v~~~~~~~--~~l~~~~~d-g~i~iw 237 (437)
+... .......+.... .+.+..... +.+.-...+|..++|+. +.++.|+.. |++-||
T Consensus 256 ~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVw 335 (893)
T KOG0291|consen 256 TKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVW 335 (893)
T ss_pred EEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEE
Confidence 0000 000001111111 111111111 11112335677788874 888887765 889999
Q ss_pred ECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe
Q 013717 238 RASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA 316 (437)
Q Consensus 238 d~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (437)
+.+....+...++|...+++++++|||. +++|+.||+|+|||...+ .++.++..|.+.|+.+.|+..|+.+++.+
T Consensus 336 eWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg----fC~vTFteHts~Vt~v~f~~~g~~llssS 411 (893)
T KOG0291|consen 336 EWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG----FCFVTFTEHTSGVTAVQFTARGNVLLSSS 411 (893)
T ss_pred EeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCc----eEEEEeccCCCceEEEEEEecCCEEEEee
Confidence 9998888888889999999999999999 999999999999976544 58999999999999999999999999999
Q ss_pred CCCcEEEEECCCCccceEEeeeecccccceEEEE--eeCCEEEEEeCCC-cEEEeeCCCCCCeeeeeeecCCCCCeeEEE
Q 013717 317 CDRSILVWDREDSANHMVVTGALRGHGKAILCLI--NVAGLLMSGSADR-TVRIWQRGSDGRFGCLAVLEGHTKPVKSLT 393 (437)
Q Consensus 317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~ 393 (437)
.||+|+.||+...++-..+... ......|++ ++|.++.+|+.|. .|++|++.+++ ++..+.||.+||.+++
T Consensus 412 LDGtVRAwDlkRYrNfRTft~P---~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGq---llDiLsGHEgPVs~l~ 485 (893)
T KOG0291|consen 412 LDGTVRAWDLKRYRNFRTFTSP---EPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQ---LLDILSGHEGPVSGLS 485 (893)
T ss_pred cCCeEEeeeecccceeeeecCC---CceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCe---eeehhcCCCCcceeeE
Confidence 9999999999876654444322 222334555 4477888888886 59999999998 8999999999999999
Q ss_pred EEccCCCCceEEEEEecCCCcEEEEeeccCCCCCCCe
Q 013717 394 AVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSSPL 430 (437)
Q Consensus 394 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 430 (437)
|+|.++ .|+++|.|.+||+|++-......+++
T Consensus 486 f~~~~~-----~LaS~SWDkTVRiW~if~s~~~vEtl 517 (893)
T KOG0291|consen 486 FSPDGS-----LLASGSWDKTVRIWDIFSSSGTVETL 517 (893)
T ss_pred EccccC-----eEEeccccceEEEEEeeccCceeeeE
Confidence 999986 79999999999999997764443333
No 20
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-37 Score=254.32 Aligned_cols=302 Identities=24% Similarity=0.390 Sum_probs=252.5
Q ss_pred ccccccCCCceeEEecCCCcc-eeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcc
Q 013717 69 PSLQKLSPDETINFSSASHLC-INSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSG 143 (437)
Q Consensus 69 ~~~~s~s~dg~i~~~~~~~~~-~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~ 143 (437)
+.+..+.+.+..+....-.+. .+.+.+ ||..+|+.+-|+ --.++++++| +|++||..+++. ...+ .+|..
T Consensus 77 ~el~~g~pt~~~~~~~~wipRp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~--e~~L---rGHt~ 151 (406)
T KOG0295|consen 77 DELIAGDPTGSKRTPALWIPRPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGEL--ERSL---RGHTD 151 (406)
T ss_pred cccccCCCCcCccChhhcCCCCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhh--hhhh---hcccc
Confidence 445555555555444432222 444555 999999999999 5667777789 999999999644 5555 78999
Q ss_pred cEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717 144 SVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN 221 (437)
Q Consensus 144 ~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 221 (437)
.|..|.|+..+ +++++.|-.+++||.++.. ..++. +.+|+..|.+++|-
T Consensus 152 sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~--~c~ks---------------------------~~gh~h~vS~V~f~ 202 (406)
T KOG0295|consen 152 SVFDISFDASGKYLATCSSDLSAKLWDFDTFF--RCIKS---------------------------LIGHEHGVSSVFFL 202 (406)
T ss_pred ceeEEEEecCccEEEecCCccchhheeHHHHH--HHHHH---------------------------hcCcccceeeEEEE
Confidence 99999999443 9999999999999998631 22221 23699999999998
Q ss_pred C--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccc
Q 013717 222 N--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKS 298 (437)
Q Consensus 222 ~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 298 (437)
| +++++++.|.+|+.|++.++.++.++.+|...|..++.+.||. +++++.|.+|++|-+.+. .+...++.|+-
T Consensus 203 P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~----~~k~~lR~hEh 278 (406)
T KOG0295|consen 203 PLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATK----QCKAELREHEH 278 (406)
T ss_pred ecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccc----hhhhhhhcccc
Confidence 8 9999999999999999999999999999999999999999999 999999999999966543 35567788999
Q ss_pred cEEEEEEccC---------------CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeC
Q 013717 299 AVNALALSDD---------------GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSA 361 (437)
Q Consensus 299 ~i~~~~~~~~---------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~ 361 (437)
+|.+++|.|. +.++.+++.|++|++||+.++. +...+.+|...|..++++ |.||+++.+
T Consensus 279 ~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~----cL~tL~ghdnwVr~~af~p~Gkyi~ScaD 354 (406)
T KOG0295|consen 279 PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM----CLFTLVGHDNWVRGVAFSPGGKYILSCAD 354 (406)
T ss_pred ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe----EEEEEecccceeeeeEEcCCCeEEEEEec
Confidence 9999999772 2589999999999999999886 455578899999999988 669999999
Q ss_pred CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEee
Q 013717 362 DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420 (437)
Q Consensus 362 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 420 (437)
|+++++||+++.+ +...+.+|..-|++++|..+.+ +++||+-|.++++|..
T Consensus 355 Dktlrvwdl~~~~---cmk~~~ah~hfvt~lDfh~~~p-----~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 355 DKTLRVWDLKNLQ---CMKTLEAHEHFVTSLDFHKTAP-----YVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCcEEEEEeccce---eeeccCCCcceeEEEecCCCCc-----eEEeccccceeeeeec
Confidence 9999999999877 9999999999999999998885 8999999999999974
No 21
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.5e-36 Score=240.21 Aligned_cols=265 Identities=24% Similarity=0.349 Sum_probs=218.3
Q ss_pred ccccccccCCCceeEEecCCC----cceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccC
Q 013717 67 SVPSLQKLSPDETINFSSASH----LCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDN 138 (437)
Q Consensus 67 ~~~~~~s~s~dg~i~~~~~~~----~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~ 138 (437)
....+.+.+.|..+.+|++.. .+..++.+ ||...|..++.+ |++.++++.| .+++||+.++ +....|
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g--~~t~~f--- 101 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG--ESTRRF--- 101 (315)
T ss_pred CCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCC--cEEEEE---
Confidence 356788999999999999943 34557777 999999999998 9999999999 9999999996 444445
Q ss_pred CCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717 139 DSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT 216 (437)
Q Consensus 139 ~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 216 (437)
.+|...|.+++|+++. +++|+.|.+|++|++.......... ..+.+.|.
T Consensus 102 ~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~-----------------------------~~~~~WVs 152 (315)
T KOG0279|consen 102 VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHE-----------------------------DSHREWVS 152 (315)
T ss_pred EecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEec-----------------------------CCCcCcEE
Confidence 5899999999999664 9999999999999998654332222 12478999
Q ss_pred EEEeCC----CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeE
Q 013717 217 GLAVNN----GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIA 291 (437)
Q Consensus 217 ~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~ 291 (437)
|+.|+| .+|++++.|++|++||+++.+....+.+|.+.++.++++|||. +++|+.||.+.+||++... .+.
T Consensus 153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k----~ly 228 (315)
T KOG0279|consen 153 CVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK----NLY 228 (315)
T ss_pred EEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCc----eeE
Confidence 999999 5899999999999999999999999999999999999999999 9999999999999997654 344
Q ss_pred EeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeeccc-----ccceEEEEee--CCEEEEEeCCCc
Q 013717 292 TLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH-----GKAILCLINV--AGLLMSGSADRT 364 (437)
Q Consensus 292 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~~i~~~~~~--~~~l~~~~~dg~ 364 (437)
.+ .+...|.+++|+|+...|+.+. +..|+|||+++......+.....+. .....+++|+ |..|++|-.|+.
T Consensus 229 sl-~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~ 306 (315)
T KOG0279|consen 229 SL-EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNV 306 (315)
T ss_pred ec-cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCc
Confidence 44 4788999999999986666664 5569999999877655554433333 3334666776 669999999999
Q ss_pred EEEeeCC
Q 013717 365 VRIWQRG 371 (437)
Q Consensus 365 i~iwd~~ 371 (437)
|++|.+.
T Consensus 307 irv~qv~ 313 (315)
T KOG0279|consen 307 IRVWQVA 313 (315)
T ss_pred EEEEEee
Confidence 9999875
No 22
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.5e-38 Score=260.74 Aligned_cols=275 Identities=22% Similarity=0.338 Sum_probs=233.7
Q ss_pred ccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCC
Q 013717 97 HKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTP 171 (437)
Q Consensus 97 h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~ 171 (437)
-..+|..+.|. |+.|++|+.. .+.+|+..+-..+ ..+ ..|..+|.++.|+.+. +++|+.+|.|++|+.+-
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFE--til---QaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFE--TIL---QAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM 169 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHH--HHh---hhhcccceeEEEccCCCEEEEcCCCceEEecccch
Confidence 34578889998 8999999999 9999998763222 222 5799999999999665 99999999999999874
Q ss_pred CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee
Q 013717 172 TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK 249 (437)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~ 249 (437)
... +.+. ..|...|++++|+| ..+++++.||+|+|||....+....+.
T Consensus 170 nnV-k~~~-----------------------------ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~ 219 (464)
T KOG0284|consen 170 NNV-KIIQ-----------------------------AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR 219 (464)
T ss_pred hhh-HHhh-----------------------------HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec
Confidence 422 1111 13558999999999 899999999999999999998888899
Q ss_pred cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 013717 250 AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRED 328 (437)
Q Consensus 250 ~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (437)
+|.-.|.+++|+|..- +++|+.|..|++||.+++ .++.++.+|+..|..+.|+|++++|++++.|..+++||+++
T Consensus 220 GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg----~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~ 295 (464)
T KOG0284|consen 220 GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG----SCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT 295 (464)
T ss_pred cCCCCcceeccCCccceeEEccCCceeEeecCCCc----chhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH
Confidence 9999999999999766 999999999999987765 47888899999999999999999999999999999999985
Q ss_pred CccceEEeeeecccccceEEEEeeCC---EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEE
Q 013717 329 SANHMVVTGALRGHGKAILCLINVAG---LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVS 405 (437)
Q Consensus 329 ~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 405 (437)
.+. ...+++|...+.++.|++- +|.+|+.||.|..|.+...+ .....-.+|...|.+++|+|-+ .+
T Consensus 296 mkE----l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~--p~~~i~~AHd~~iwsl~~hPlG-----hi 364 (464)
T KOG0284|consen 296 MKE----LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE--PLGEIPPAHDGEIWSLAYHPLG-----HI 364 (464)
T ss_pred hHH----HHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc--cccCCCcccccceeeeeccccc-----ee
Confidence 543 3446889999999998854 99999999999999998544 2344456899999999999998 58
Q ss_pred EEEecCCCcEEEEeec
Q 013717 406 VFSGSLDGEIRAWQVS 421 (437)
Q Consensus 406 l~s~~~dg~i~iw~~~ 421 (437)
|++|+.|.++++|.-.
T Consensus 365 l~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 365 LATGSNDRTVRFWTRN 380 (464)
T ss_pred EeecCCCcceeeeccC
Confidence 9999999999999744
No 23
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.4e-38 Score=267.53 Aligned_cols=286 Identities=16% Similarity=0.269 Sum_probs=239.4
Q ss_pred cceeeeec-CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEec
Q 013717 88 LCINSVQL-GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQ 160 (437)
Q Consensus 88 ~~~~~~~~-~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~ 160 (437)
+...++.+ ||+..|+++.|. +.+|++++.| .|+||++-. ...+++++ .+|..+|..++|++.+ +++++.
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~-~~~~lrtf---~gH~k~Vrd~~~s~~g~~fLS~sf 278 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD-DRRCLRTF---KGHRKPVRDASFNNCGTSFLSASF 278 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec-Ccceehhh---hcchhhhhhhhccccCCeeeeeec
Confidence 45667778 999999999997 8999999999 999999987 35677777 7999999999999655 999999
Q ss_pred CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEE
Q 013717 161 DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIW 237 (437)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iw 237 (437)
|+.|++||+++|+....+. ....++|+.|+| +.+++|+.|+.|+.|
T Consensus 279 D~~lKlwDtETG~~~~~f~-------------------------------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~w 327 (503)
T KOG0282|consen 279 DRFLKLWDTETGQVLSRFH-------------------------------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQW 327 (503)
T ss_pred ceeeeeeccccceEEEEEe-------------------------------cCCCceeeecCCCCCcEEEEecCCCcEEEE
Confidence 9999999999998766554 455778999988 799999999999999
Q ss_pred ECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe
Q 013717 238 RASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA 316 (437)
Q Consensus 238 d~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (437)
|+++++.++++..|-+.|..+.|-++|+ +++.+.|+.++||+.+.... .......+.-...++..+|+++++++-+
T Consensus 328 DiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~---ik~i~~~~~hsmP~~~~~P~~~~~~aQs 404 (503)
T KOG0282|consen 328 DIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP---IKNIADPEMHTMPCLTLHPNGKWFAAQS 404 (503)
T ss_pred eccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc---chhhcchhhccCcceecCCCCCeehhhc
Confidence 9999999999999999999999999999 99999999999998765431 1111222344567899999999999999
Q ss_pred CCCcEEEEECCCCccceEEeeeecccccce--EEEE--eeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEE
Q 013717 317 CDRSILVWDREDSANHMVVTGALRGHGKAI--LCLI--NVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSL 392 (437)
Q Consensus 317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i--~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l 392 (437)
.|+.|.+|.+... -.......+.+|...= +.+. +++.+|++|..||.+.+||.++-+ ++..+.+|.+++..+
T Consensus 405 ~dN~i~ifs~~~~-~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k---l~~~lkah~~~ci~v 480 (503)
T KOG0282|consen 405 MDNYIAIFSTVPP-FRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK---LVSKLKAHDQPCIGV 480 (503)
T ss_pred cCceEEEEecccc-cccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh---hhhccccCCcceEEE
Confidence 9999999997543 2222334456665432 3334 445699999999999999999866 889999999999999
Q ss_pred EEEccCCCCceEEEEEecCCCcEEEEe
Q 013717 393 TAVTEEGQNGVVSVFSGSLDGEIRAWQ 419 (437)
Q Consensus 393 ~~~~~~~~~~~~~l~s~~~dg~i~iw~ 419 (437)
.|+|.... .++|||.||.|++|+
T Consensus 481 ~wHP~e~S----kvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 481 DWHPVEPS----KVATCGWDGLIKIWD 503 (503)
T ss_pred EecCCCcc----eeEecccCceeEecC
Confidence 99998876 799999999999996
No 24
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.5e-37 Score=275.35 Aligned_cols=279 Identities=21% Similarity=0.365 Sum_probs=231.1
Q ss_pred CCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecC
Q 013717 86 SHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQD 161 (437)
Q Consensus 86 ~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~d 161 (437)
.....+..++ .-...++|..|+ +..||.|-.| .|++|.+...+++.++. ...+. .+=+.+.|
T Consensus 365 ~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~-------~~~l~-------~~d~~sad 430 (707)
T KOG0263|consen 365 SLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKD-------ASDLS-------NIDTESAD 430 (707)
T ss_pred CCCcEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccc-------hhhhc-------cccccccc
Confidence 3345566666 667889999999 7889999999 99999998743333222 11111 12233334
Q ss_pred CeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEEC
Q 013717 162 CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRA 239 (437)
Q Consensus 162 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~ 239 (437)
-.+.+-|-+.... .+.+.+|.++|..+.|+| ++|+++++|+++|+|.+
T Consensus 431 ~~~~~~D~~~~~~------------------------------~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl 480 (707)
T KOG0263|consen 431 VDVDMLDDDSSGT------------------------------SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSL 480 (707)
T ss_pred hhhhhccccCCce------------------------------eEEeecCCCceeeeeecccccceeeccCCcceeeeec
Confidence 3344555443321 123468999999999999 99999999999999999
Q ss_pred CCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC
Q 013717 240 SDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD 318 (437)
Q Consensus 240 ~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 318 (437)
.+..++..+++|..+|+.+.|+|.|. ||+++.|++-++|..... .+++.+.+|.+.|.|+.|+|+..|+++|+.|
T Consensus 481 ~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~----~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD 556 (707)
T KOG0263|consen 481 DTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN----KPLRIFAGHLSDVDCVSFHPNSNYVATGSSD 556 (707)
T ss_pred ccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC----CchhhhcccccccceEEECCcccccccCCCC
Confidence 99999999999999999999999999 999999999999976653 5788899999999999999999999999999
Q ss_pred CcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEc
Q 013717 319 RSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT 396 (437)
Q Consensus 319 g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~ 396 (437)
.+|++||+.++.. .+.+.||.++|.++++++. +|++|+.||.|.+||+.++. ++..+.+|.+.|.+|.|+.
T Consensus 557 ~tVRlWDv~~G~~----VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~---~v~~l~~Ht~ti~SlsFS~ 629 (707)
T KOG0263|consen 557 RTVRLWDVSTGNS----VRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGS---LVKQLKGHTGTIYSLSFSR 629 (707)
T ss_pred ceEEEEEcCCCcE----EEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCc---chhhhhcccCceeEEEEec
Confidence 9999999998874 4556889999999888755 99999999999999999987 8999999999999999999
Q ss_pred cCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 397 EEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 397 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
++. .|++||.|.+|++||+....
T Consensus 630 dg~-----vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 630 DGN-----VLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred CCC-----EEEecCCCCeEEEEEchhhc
Confidence 996 79999999999999987543
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.9e-35 Score=249.99 Aligned_cols=305 Identities=18% Similarity=0.267 Sum_probs=254.6
Q ss_pred eccccc-cccccCCCceeEEecCCC-cceeeee------c-------CccCCeEEEEee--CCEEEEEecC-eEEEEeCC
Q 013717 64 TLPSVP-SLQKLSPDETINFSSASH-LCINSVQ------L-------GHKLPIGCIAVH--HNFLYAASSH-EINVYDRT 125 (437)
Q Consensus 64 ~~~~~~-~~~s~s~dg~i~~~~~~~-~~~~~~~------~-------~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~ 125 (437)
-.|... .+++.+.|...++|++.. ...+... + .-+..|++|+|+ |.+||+|+.| .+++|+..
T Consensus 186 WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~ 265 (524)
T KOG0273|consen 186 WNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKD 265 (524)
T ss_pred cCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecC
Confidence 345555 788888999999999853 2222221 1 224689999999 9999999999 99999998
Q ss_pred CCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeec
Q 013717 126 GTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRH 203 (437)
Q Consensus 126 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (437)
.. .+.++ ..|.++|.+|.|+..+ |++++.|+++.+||..++...+.+.
T Consensus 266 G~---l~~tl---~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~------------------------ 315 (524)
T KOG0273|consen 266 GN---LISTL---GQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFE------------------------ 315 (524)
T ss_pred ch---hhhhh---hccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeee------------------------
Confidence 73 45555 5699999999999544 9999999999999998886544433
Q ss_pred cceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCC
Q 013717 204 KKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKP 281 (437)
Q Consensus 204 ~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~ 281 (437)
-|..+-.++.|-. ..+++.+.|+.|+++.+...+++.++.+|.++|.+|.|+|.+. |++++.|++++||.+.
T Consensus 316 ------~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~ 389 (524)
T KOG0273|consen 316 ------FHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMG 389 (524)
T ss_pred ------eccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecC
Confidence 3777767888876 8999999999999999999999999999999999999999999 9999999999999765
Q ss_pred CCcccceeeEEeeCccccEEEEEEccCC---------CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee
Q 013717 282 FNEKRHALIATLEKHKSAVNALALSDDG---------TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV 352 (437)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 352 (437)
.. .....+.+|...|..+.|+|+| ..+++++.|++|++||+..+. ....+..|..+|.+++++
T Consensus 390 ~~----~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv----~i~~f~kH~~pVysvafS 461 (524)
T KOG0273|consen 390 QS----NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV----PIHTLMKHQEPVYSVAFS 461 (524)
T ss_pred CC----cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc----eeEeeccCCCceEEEEec
Confidence 33 3677788999999999999954 479999999999999998887 445567799999999998
Q ss_pred CC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717 353 AG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 353 ~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
++ ++|+|+.||.|.+|+.++++ .++.+.+ .+.|..++|+.+++ +|..+-.||.+++-|+.
T Consensus 462 ~~g~ylAsGs~dg~V~iws~~~~~---l~~s~~~-~~~Ifel~Wn~~G~-----kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 462 PNGRYLASGSLDGCVHIWSTKTGK---LVKSYQG-TGGIFELCWNAAGD-----KLGACASDGSVCVLDLR 523 (524)
T ss_pred CCCcEEEecCCCCeeEeccccchh---eeEeecC-CCeEEEEEEcCCCC-----EEEEEecCCCceEEEec
Confidence 54 99999999999999999977 6666664 55699999999986 58888889999999875
No 26
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.6e-35 Score=243.97 Aligned_cols=295 Identities=25% Similarity=0.384 Sum_probs=244.6
Q ss_pred EEecCCCcceeeeecCccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEe--CCe---
Q 013717 81 NFSSASHLCINSVQLGHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC--DGK--- 154 (437)
Q Consensus 81 ~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~--- 154 (437)
.|-..-...+....+-|.+.|.++...++++++|+.| .+++||.... ....+ .+|.++|.+++|. +..
T Consensus 88 EYv~~~~aP~pl~~~~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk---~~~~~---~Ght~~ik~v~~v~~n~~~~~ 161 (423)
T KOG0313|consen 88 EYVEAITAPKPLQCFLHDDWVSSVKGASKWILTGSYDGTSRIWDLKGK---SIKTI---VGHTGPIKSVAWVIKNSSSCL 161 (423)
T ss_pred EEEEecCCCCccccccchhhhhhhcccCceEEEeecCCeeEEEecCCc---eEEEE---ecCCcceeeeEEEecCCccce
Confidence 3333344456666678999999999999999999999 9999999873 34444 5899999999986 222
Q ss_pred EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCC
Q 013717 155 IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDK 232 (437)
Q Consensus 155 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg 232 (437)
|++++.|.++++|.++.++........ -.||...|.++...+ ..+++|+.|.
T Consensus 162 fvsas~Dqtl~Lw~~~~~~~~~~~~~~--------------------------~~GHk~~V~sVsv~~sgtr~~SgS~D~ 215 (423)
T KOG0313|consen 162 FVSASMDQTLRLWKWNVGENKVKALKV--------------------------CRGHKRSVDSVSVDSSGTRFCSGSWDT 215 (423)
T ss_pred EEEecCCceEEEEEecCchhhhhHHhH--------------------------hcccccceeEEEecCCCCeEEeecccc
Confidence 999999999999999877644332211 137999999999877 8999999999
Q ss_pred cEEEEECCC-------------------------cceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccc
Q 013717 233 SLKIWRASD-------------------------LRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRH 287 (437)
Q Consensus 233 ~i~iwd~~~-------------------------~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 287 (437)
.|+||+..+ +.++..+.+|.++|.++.|++.+.+.+++.|.+|+.||+..+.
T Consensus 216 ~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~--- 292 (423)
T KOG0313|consen 216 MLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGG--- 292 (423)
T ss_pred eeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeeccc---
Confidence 999999321 2345677899999999999986669999999999999998765
Q ss_pred eeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEEeCCCc
Q 013717 288 ALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGSADRT 364 (437)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~ 364 (437)
....+. ....++++..+|..++|++|+.|..|++||.+++.. ......+.+|...|.++.+++. .|++|+.|++
T Consensus 293 -~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g-s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t 369 (423)
T KOG0313|consen 293 -LKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG-SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT 369 (423)
T ss_pred -ceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCC-ceeEEeeecchhhhhheecCCCCceEEEEEecCCe
Confidence 233333 467899999999999999999999999999998843 3466778999999999999876 8999999999
Q ss_pred EEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717 365 VRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 365 i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
+++||+++.. .++..+.+|.+.|.++.|.... ++++||.|.+|+++.-.
T Consensus 370 ~klWDvRS~k--~plydI~~h~DKvl~vdW~~~~------~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 370 VKLWDVRSTK--APLYDIAGHNDKVLSVDWNEGG------LIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEEEEeccCC--CcceeeccCCceEEEEeccCCc------eEEeccCcceEEEeccc
Confidence 9999999866 5889999999999999999876 79999999999998643
No 27
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=9.1e-35 Score=249.18 Aligned_cols=321 Identities=20% Similarity=0.261 Sum_probs=261.0
Q ss_pred ceeeccccccccccCCCceeEEecCCC-cceeeeec-CccCCeEEEEee--CCEEEEEecC-----eEEEEeCCCCceee
Q 013717 61 SLQTLPSVPSLQKLSPDETINFSSASH-LCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-----EINVYDRTGTTWTS 131 (437)
Q Consensus 61 ~~~~~~~~~~~~s~s~dg~i~~~~~~~-~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-----~v~vwd~~~~~~~~ 131 (437)
-..++|+...++++...|.+++|+... ...+...+ .-.++|..++|+ ++.+++.+++ .+.+||..+ .
T Consensus 64 VAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~----S 139 (603)
T KOG0318|consen 64 VAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGN----S 139 (603)
T ss_pred EEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCC----c
Confidence 458899999999999999999999976 55555566 788999999999 7777777654 455666544 2
Q ss_pred eeccccCCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceee
Q 013717 132 INTFNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLW 208 (437)
Q Consensus 132 ~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (437)
...+ .+|...|+++.|-|.+ +++|+.|++|.+|+-...+.... +
T Consensus 140 vGei---~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s------------------------------~ 186 (603)
T KOG0318|consen 140 VGEI---TGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSS------------------------------F 186 (603)
T ss_pred ccee---eccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeec------------------------------c
Confidence 3333 6899999999999776 99999999999998654432222 2
Q ss_pred ecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee---cccccEEEEEEecCCe-EEEEeCCCeEEEecCCC
Q 013717 209 IEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK---AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPF 282 (437)
Q Consensus 209 ~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~ 282 (437)
..|..-|+|+.|+| .++++++.||+|.+||-.+++.+..+. +|++.|.+++|+||+. +++++.|.+++|||+..
T Consensus 187 r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~ 266 (603)
T KOG0318|consen 187 REHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVST 266 (603)
T ss_pred cccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeec
Confidence 36999999999999 999999999999999999999999998 8999999999999999 99999999999999875
Q ss_pred Ccc---------------------------------------cceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEE
Q 013717 283 NEK---------------------------------------RHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILV 323 (437)
Q Consensus 283 ~~~---------------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 323 (437)
+.. ....+..+.+|...|+++..+||+++|++|+.||.|.-
T Consensus 267 ~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~ 346 (603)
T KOG0318|consen 267 NSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINS 346 (603)
T ss_pred cceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEE
Confidence 431 11234456789999999999999999999999999999
Q ss_pred EECCCCccc-----------------------------------------------------------------------
Q 013717 324 WDREDSANH----------------------------------------------------------------------- 332 (437)
Q Consensus 324 ~d~~~~~~~----------------------------------------------------------------------- 332 (437)
|+..++...
T Consensus 347 W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~ 426 (603)
T KOG0318|consen 347 WDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACIS 426 (603)
T ss_pred EecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecC
Confidence 998611000
Q ss_pred ---------------------------------------e-----------EEeeeecccccceEEEEeeCC--EEEEEe
Q 013717 333 ---------------------------------------M-----------VVTGALRGHGKAILCLINVAG--LLMSGS 360 (437)
Q Consensus 333 ---------------------------------------~-----------~~~~~~~~~~~~i~~~~~~~~--~l~~~~ 360 (437)
. ........|.+.+++++++++ +||+|.
T Consensus 427 ~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~D 506 (603)
T KOG0318|consen 427 DIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGD 506 (603)
T ss_pred cEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEec
Confidence 0 000012347778888888876 999999
Q ss_pred CCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 361 ADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 361 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
..+.+.+||+.+.+. ....+.-|...|.+|+|+|+. ++++||+-|-+|.||+++.+..
T Consensus 507 a~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aWsP~n-----~~vATGSlDt~Viiysv~kP~~ 564 (603)
T KOG0318|consen 507 ASRKVVLYDVASREV--KTNRWAFHTAKINCVAWSPNN-----KLVATGSLDTNVIIYSVKKPAK 564 (603)
T ss_pred cCCcEEEEEcccCce--ecceeeeeeeeEEEEEeCCCc-----eEEEeccccceEEEEEccChhh
Confidence 999999999998762 445556699999999999998 4899999999999999987653
No 28
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.3e-36 Score=252.94 Aligned_cols=287 Identities=22% Similarity=0.322 Sum_probs=233.3
Q ss_pred cceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCC-ceeeeeccccCCCCcccEEEEEEeCCe--EEEEec
Q 013717 88 LCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGT-TWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQ 160 (437)
Q Consensus 88 ~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~ 160 (437)
+.+..+++ .|.+.|.-+.|+ |+|||+++.| +..+|++... ..+...++ .+|..+|..|.|+||- |++|+.
T Consensus 213 p~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tl---vgh~~~V~yi~wSPDdryLlaCg~ 289 (519)
T KOG0293|consen 213 PSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTL---VGHSQPVSYIMWSPDDRYLLACGF 289 (519)
T ss_pred CchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeee---ecccCceEEEEECCCCCeEEecCc
Confidence 34555667 999999999999 9999999999 9999998652 33444555 7899999999999764 999999
Q ss_pred CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEE
Q 013717 161 DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWR 238 (437)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd 238 (437)
|..+.+||+.++....... .++...+.+++|.| ..+++|+.|+.+..||
T Consensus 290 ~e~~~lwDv~tgd~~~~y~-----------------------------~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wd 340 (519)
T KOG0293|consen 290 DEVLSLWDVDTGDLRHLYP-----------------------------SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWD 340 (519)
T ss_pred hHheeeccCCcchhhhhcc-----------------------------cCcCCCcceeEEccCCceeEecCCCCcEEEec
Confidence 9999999999998665544 23567899999999 7899999999999999
Q ss_pred CCCcceEEEeecc-cccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe
Q 013717 239 ASDLRCLESIKAH-EDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA 316 (437)
Q Consensus 239 ~~~~~~~~~~~~~-~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (437)
+.. +.+..+++. ...|.++++.+||+ +++.+.|..|++|+....... . +.....+|+++..+.||+++++.-
T Consensus 341 lDg-n~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr----~-lise~~~its~~iS~d~k~~LvnL 414 (519)
T KOG0293|consen 341 LDG-NILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDR----G-LISEEQPITSFSISKDGKLALVNL 414 (519)
T ss_pred CCc-chhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhh----c-cccccCceeEEEEcCCCcEEEEEc
Confidence 854 455555533 35699999999999 888889999999987543221 1 223567899999999999999999
Q ss_pred CCCcEEEEECCCCccceEEeeeecccccce----EEEEeeC-CEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeE
Q 013717 317 CDRSILVWDREDSANHMVVTGALRGHGKAI----LCLINVA-GLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKS 391 (437)
Q Consensus 317 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i----~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 391 (437)
.+..+++||++... +...+.||...- .|+.... .++++|++|+.|+||+..+++ ++.++.||...|++
T Consensus 415 ~~qei~LWDl~e~~----lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk---ll~~LsGHs~~vNc 487 (519)
T KOG0293|consen 415 QDQEIHLWDLEENK----LVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK---LLAVLSGHSKTVNC 487 (519)
T ss_pred ccCeeEEeecchhh----HHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc---eeEeecCCcceeeE
Confidence 99999999998655 333445554432 2333222 399999999999999999988 99999999999999
Q ss_pred EEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717 392 LTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 392 l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
++|+|..+. ++++||+||+||||.....
T Consensus 488 VswNP~~p~----m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 488 VSWNPADPE----MFASASDDGTIRIWGPSDN 515 (519)
T ss_pred EecCCCCHH----HhhccCCCCeEEEecCCcc
Confidence 999999886 9999999999999987643
No 29
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.7e-36 Score=245.84 Aligned_cols=268 Identities=25% Similarity=0.372 Sum_probs=235.5
Q ss_pred cceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeecc
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTF 135 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~ 135 (437)
..+-++|+...+++.+.|++|.+|+..... +...+ ||.+.|..++|+ |.+||+++.| .+++||.+.. .++++.+
T Consensus 112 t~v~~hp~~~~v~~as~d~tikv~D~~tg~-~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-~~c~ks~ 189 (406)
T KOG0295|consen 112 TRVIFHPSEALVVSASEDATIKVFDTETGE-LERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF-FRCIKSL 189 (406)
T ss_pred eeeeeccCceEEEEecCCceEEEEEccchh-hhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH-HHHHHHh
Confidence 466789999999999999999999997744 47777 999999999999 9999999999 8999999874 3344443
Q ss_pred ccCCCCcccEEEEEEeCC--eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCC
Q 013717 136 NDNDSSSGSVKSVTFCDG--KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGD 213 (437)
Q Consensus 136 ~~~~~h~~~v~~l~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (437)
.+|.-.|.+++|-|. .+++++.|.+|+.|++.++-....+ .+|..
T Consensus 190 ---~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~------------------------------~~h~e 236 (406)
T KOG0295|consen 190 ---IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTF------------------------------PGHSE 236 (406)
T ss_pred ---cCcccceeeEEEEecCCeeeecccccceeEEecccceeEEec------------------------------cCchH
Confidence 789999999999854 4999999999999999998655443 46889
Q ss_pred cEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecC---------------Ce-EEEEeCCCeE
Q 013717 214 AVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAG---------------GT-VYTGSADRKI 275 (437)
Q Consensus 214 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~-l~~~~~dg~v 275 (437)
.|..+..+. .++++++.|.+|++|-+.++++...++.|+.+|.+++|-|. +. +.+++.|++|
T Consensus 237 wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktI 316 (406)
T KOG0295|consen 237 WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTI 316 (406)
T ss_pred hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceE
Confidence 999999987 88999999999999999999999999999999999999753 13 8899999999
Q ss_pred EEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-
Q 013717 276 RVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG- 354 (437)
Q Consensus 276 ~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 354 (437)
++||+.++ .++.++.+|.+.|..++|+|.|+||+++..|+++++||+++.+ ....+..|..-+++++++.+
T Consensus 317 k~wdv~tg----~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~----cmk~~~ah~hfvt~lDfh~~~ 388 (406)
T KOG0295|consen 317 KIWDVSTG----MCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ----CMKTLEAHEHFVTSLDFHKTA 388 (406)
T ss_pred EEEeccCC----eEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce----eeeccCCCcceeEEEecCCCC
Confidence 99988765 5889999999999999999999999999999999999998776 44556689999999999866
Q ss_pred -EEEEEeCCCcEEEeeC
Q 013717 355 -LLMSGSADRTVRIWQR 370 (437)
Q Consensus 355 -~l~~~~~dg~i~iwd~ 370 (437)
++++|+-|.++++|.-
T Consensus 389 p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 389 PYVVTGSVDQTVKVWEC 405 (406)
T ss_pred ceEEeccccceeeeeec
Confidence 9999999999999964
No 30
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=3.9e-35 Score=240.61 Aligned_cols=317 Identities=14% Similarity=0.171 Sum_probs=258.0
Q ss_pred ceEEeccccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCC
Q 013717 52 YSVSLQSNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGT 127 (437)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~ 127 (437)
|.....+.++++.+|+.+++++++.|..-.+|+..... ....+ ||.+.|+|+.|+ |.+||||+-+ .|+||+..++
T Consensus 60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge-~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg 138 (399)
T KOG0296|consen 60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE-FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG 138 (399)
T ss_pred hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc-ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccC
Confidence 34444566889999999999999999999999998766 45555 999999999999 9999999999 9999999996
Q ss_pred ceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccc
Q 013717 128 TWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKK 205 (437)
Q Consensus 128 ~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (437)
..+. .+ ......|.-+.|+|.. |++|+.||.+-+|.+.++.. .
T Consensus 139 ~~~~--~~---~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~------------------------------~ 183 (399)
T KOG0296|consen 139 GEQW--KL---DQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQAL------------------------------C 183 (399)
T ss_pred ceEE--Ee---ecccCceEEEEecccccEEEeecCCCcEEEEECCCcce------------------------------e
Confidence 4332 22 1345678888888865 99999999999999987532 2
Q ss_pred eeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeec-ccccEEEEEEecCCe-EEEEeCCCeEEEecCC
Q 013717 206 KLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKA-HEDAVNAVAVSAGGT-VYTGSADRKIRVWAKP 281 (437)
Q Consensus 206 ~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~ 281 (437)
+++.+|..++++=.|.| +.++++..||+|++||..+++++..+.. ......++.++..+. ++.|..++.+++-+..
T Consensus 184 kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~ 263 (399)
T KOG0296|consen 184 KVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNG 263 (399)
T ss_pred eEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccc
Confidence 34468999999999988 9999999999999999999999988862 345677888888887 8888888888887443
Q ss_pred CCcccceeeEEee--------CccccEEEEEEcc---CCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEE
Q 013717 282 FNEKRHALIATLE--------KHKSAVNALALSD---DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLI 350 (437)
Q Consensus 282 ~~~~~~~~~~~~~--------~~~~~i~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~ 350 (437)
+ .+.+.... .+...+.++.+.| .=.+.|+|+.||+|.|||+...+.... -.|...|..+.
T Consensus 264 s----gKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~-----c~he~~V~~l~ 334 (399)
T KOG0296|consen 264 S----GKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHI-----CEHEDGVTKLK 334 (399)
T ss_pred c----ceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhhee-----ccCCCceEEEE
Confidence 3 23333332 2444455555554 556889999999999999987653332 34788899999
Q ss_pred eeC-CEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717 351 NVA-GLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 351 ~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
|.+ .+|++++.+|.|+.||.++++ ++.++.||..+|.+++.+|+.+ +++|+|.|++.+|+++.
T Consensus 335 w~~t~~l~t~c~~g~v~~wDaRtG~---l~~~y~GH~~~Il~f~ls~~~~-----~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 335 WLNTDYLLTACANGKVRQWDARTGQ---LKFTYTGHQMGILDFALSPQKR-----LVVTVSDDNTALVFEVP 398 (399)
T ss_pred EcCcchheeeccCceEEeeeccccc---eEEEEecCchheeEEEEcCCCc-----EEEEecCCCeEEEEecC
Confidence 998 599999999999999999998 9999999999999999999884 89999999999999875
No 31
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.7e-35 Score=269.68 Aligned_cols=283 Identities=28% Similarity=0.499 Sum_probs=234.3
Q ss_pred eeec-C-ccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeE
Q 013717 92 SVQL-G-HKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKI 164 (437)
Q Consensus 92 ~~~~-~-h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i 164 (437)
...+ + |...|.|+.|+ |++|++++.+ .+++|+...........+ .+|...|..++|+++. +++++.|++|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l---~~h~~~v~~~~fs~d~~~l~s~s~D~ti 227 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL---SGHTRGVSDVAFSPDGSYLLSGSDDKTL 227 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc---cccccceeeeEECCCCcEEEEecCCceE
Confidence 4445 4 48999999999 9999999999 999999966432123333 6899999999999776 9999999999
Q ss_pred EEEeCCCC-cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCC
Q 013717 165 RVWQLTPT-KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASD 241 (437)
Q Consensus 165 ~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~ 241 (437)
++||+... ...+ .+.+|...|++++|++ +++++|+.|++|+|||+++
T Consensus 228 riwd~~~~~~~~~------------------------------~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~ 277 (456)
T KOG0266|consen 228 RIWDLKDDGRNLK------------------------------TLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRT 277 (456)
T ss_pred EEeeccCCCeEEE------------------------------EecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccC
Confidence 99999433 3332 3347999999999999 7999999999999999999
Q ss_pred cceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccc--cEEEEEEccCCCEEEEEeCC
Q 013717 242 LRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKS--AVNALALSDDGTVLFSGACD 318 (437)
Q Consensus 242 ~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d 318 (437)
++++..+.+|.+.|++++|++++. |++++.|+.|++||+...... +...+..+.. +++++.|+|++.++++++.|
T Consensus 278 ~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d 355 (456)
T KOG0266|consen 278 GECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL--CLKLLSGAENSAPVTSVQFSPNGKYLLSASLD 355 (456)
T ss_pred CeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee--eeecccCCCCCCceeEEEECCCCcEEEEecCC
Confidence 999999999999999999999999 999999999999998765422 3445555544 49999999999999999999
Q ss_pred CcEEEEECCCCccceEEeeeecccccceEEE---E--eeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCC-CCCeeEE
Q 013717 319 RSILVWDREDSANHMVVTGALRGHGKAILCL---I--NVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGH-TKPVKSL 392 (437)
Q Consensus 319 g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~---~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l 392 (437)
+.+++||+..+... ..+.+|...+.|+ . ..+.++++|+.|+.|++||..++. .+..+.+| ...+..+
T Consensus 356 ~~~~~w~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~---~~~~l~~h~~~~~~~~ 428 (456)
T KOG0266|consen 356 RTLKLWDLRSGKSV----GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG---ILQRLEGHSKAAVSDL 428 (456)
T ss_pred CeEEEEEccCCcce----eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc---hhhhhcCCCCCceecc
Confidence 99999999877643 3345555543333 2 235599999999999999999866 78899999 8999999
Q ss_pred EEEccCCCCceEEEEEec--CCCcEEEEeec
Q 013717 393 TAVTEEGQNGVVSVFSGS--LDGEIRAWQVS 421 (437)
Q Consensus 393 ~~~~~~~~~~~~~l~s~~--~dg~i~iw~~~ 421 (437)
++++..+ ++++++ .|+.+++|..+
T Consensus 429 ~~~~~~~-----~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 429 SSHPTEN-----LIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred ccCCCcC-----eeeecCcCCCceEEEecCC
Confidence 9999885 788888 79999999865
No 32
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-34 Score=258.07 Aligned_cols=343 Identities=21% Similarity=0.361 Sum_probs=257.2
Q ss_pred ceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccc
Q 013717 61 SLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFN 136 (437)
Q Consensus 61 ~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~ 136 (437)
.+...|....++.+-.||.|++|+..+. .....+ ||...|+++.|+ |..|++||.| .|.+||+-.... ...+
T Consensus 70 ~l~~~~d~l~lAVGYaDGsVqif~~~s~-~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~G--l~rL- 145 (888)
T KOG0306|consen 70 CLRSSDDILLLAVGYADGSVQIFSLESE-EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEG--LFRL- 145 (888)
T ss_pred EeeccCCcceEEEEecCceEEeeccCCC-ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEecccee--eEEe-
Confidence 4455567777788888999999999876 555556 999999999999 9999999999 999999987432 3333
Q ss_pred cCCCCcccEEEEEEeC-Ce-EEEEecCCeEEEEeCCCCcccccccccCc------------------cc-----------
Q 013717 137 DNDSSSGSVKSVTFCD-GK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPT------------------VN----------- 185 (437)
Q Consensus 137 ~~~~h~~~v~~l~~~~-~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------------------~~----------- 185 (437)
.+|...|+..-|.. +. +++.+.|+.|++||+++..+......-.. ..
T Consensus 146 --~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D 223 (888)
T KOG0306|consen 146 --RGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDD 223 (888)
T ss_pred --ecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccc
Confidence 68999999999985 44 99999999999999987543221110000 00
Q ss_pred ---------------------cceee--ecCCCCeeEEeeccc-------------------------------------
Q 013717 186 ---------------------DRLLR--FMLPNSYVTVRRHKK------------------------------------- 205 (437)
Q Consensus 186 ---------------------~~~~~--~~~~~~~~~~~~~~~------------------------------------- 205 (437)
++... ....+.++.+.+..+
T Consensus 224 ~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v 303 (888)
T KOG0306|consen 224 EKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDV 303 (888)
T ss_pred cccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccch
Confidence 00000 000000111100000
Q ss_pred ---------------------------------------------------------------eeeecCCCcEEEEEeCC
Q 013717 206 ---------------------------------------------------------------KLWIEHGDAVTGLAVNN 222 (437)
Q Consensus 206 ---------------------------------------------------------------~~~~~~~~~v~~~~~~~ 222 (437)
-.+.+|...|.+++++.
T Consensus 304 ~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~ 383 (888)
T KOG0306|consen 304 EKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSS 383 (888)
T ss_pred hhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeec
Confidence 11257888899999988
Q ss_pred -CeEEEEECCCcEEEEECCCcceEEE----------------------------------------eecccccEEEEEEe
Q 013717 223 -GLIYSVSWDKSLKIWRASDLRCLES----------------------------------------IKAHEDAVNAVAVS 261 (437)
Q Consensus 223 -~~l~~~~~dg~i~iwd~~~~~~~~~----------------------------------------~~~~~~~v~~~~~~ 261 (437)
+.++..+..+.+++|+..+.+++++ +++|.+.|++++.+
T Consensus 384 d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~ 463 (888)
T KOG0306|consen 384 DSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLS 463 (888)
T ss_pred CceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeec
Confidence 5555555678899999887665543 23678899999999
Q ss_pred cCCe-EEEEeCCCeEEEecCCCCcc----cceee-----EEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCcc
Q 013717 262 AGGT-VYTGSADRKIRVWAKPFNEK----RHALI-----ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSAN 331 (437)
Q Consensus 262 ~~~~-l~~~~~dg~v~iwd~~~~~~----~~~~~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 331 (437)
||++ +++|+.|.+|++||...-.. +.+.+ +.+ .-...|.|+.+||||++|+++-.|.+|+||-+++.+
T Consensus 464 pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK- 541 (888)
T KOG0306|consen 464 PDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK- 541 (888)
T ss_pred CCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEeccee-
Confidence 9999 99999999999998642211 10111 112 245789999999999999999999999999997755
Q ss_pred ceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEe
Q 013717 332 HMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSG 409 (437)
Q Consensus 332 ~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~ 409 (437)
+.-.+.||.-+|.|+..+++ +++||+.|..|+||-+.-|. |.+.+-+|.+.|.++.|.|.. .+++++
T Consensus 542 ---FflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD---CHKS~fAHdDSvm~V~F~P~~-----~~FFt~ 610 (888)
T KOG0306|consen 542 ---FFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD---CHKSFFAHDDSVMSVQFLPKT-----HLFFTC 610 (888)
T ss_pred ---eeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccch---hhhhhhcccCceeEEEEcccc-----eeEEEe
Confidence 66678899999998876654 99999999999999999888 999999999999999999966 489999
Q ss_pred cCCCcEEEEeecc
Q 013717 410 SLDGEIRAWQVSV 422 (437)
Q Consensus 410 ~~dg~i~iw~~~~ 422 (437)
|.||.|+-||-+.
T Consensus 611 gKD~kvKqWDg~k 623 (888)
T KOG0306|consen 611 GKDGKVKQWDGEK 623 (888)
T ss_pred cCcceEEeechhh
Confidence 9999999998554
No 33
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.9e-35 Score=232.55 Aligned_cols=269 Identities=17% Similarity=0.282 Sum_probs=236.3
Q ss_pred cceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeecc
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTF 135 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~ 135 (437)
..+.|.|....+++.+.|..|.+|++....+....+ +|.++|..+.|. ++.+++++.| +|+.||.++| +..+.+
T Consensus 51 ~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG--~~~rk~ 128 (338)
T KOG0265|consen 51 YTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETG--KRIRKH 128 (338)
T ss_pred EEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccc--eeeehh
Confidence 577999999999999999999999998888888888 999999999998 9999999999 9999999995 555555
Q ss_pred ccCCCCcccEEEEEEeC---CeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC
Q 013717 136 NDNDSSSGSVKSVTFCD---GKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG 212 (437)
Q Consensus 136 ~~~~~h~~~v~~l~~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (437)
++|..-|+.+.-.. ..+.+++.||++++||+++....+.+. ..
T Consensus 129 ---k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-------------------------------~k 174 (338)
T KOG0265|consen 129 ---KGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-------------------------------NK 174 (338)
T ss_pred ---ccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-------------------------------cc
Confidence 67999999998552 228899999999999999876555443 45
Q ss_pred CcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCccccee
Q 013717 213 DAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHAL 289 (437)
Q Consensus 213 ~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~ 289 (437)
.+++++.|.. ..+.+|+-|+.|++||++.......+.+|.+.|+.+..+++|. +.+-+.|.++++||++.-.....+
T Consensus 175 yqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~ 254 (338)
T KOG0265|consen 175 YQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRC 254 (338)
T ss_pred eeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCce
Confidence 6899999987 8999999999999999999999999999999999999999999 999999999999999876666667
Q ss_pred eEEeeCccc----cEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCC
Q 013717 290 IATLEKHKS----AVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADR 363 (437)
Q Consensus 290 ~~~~~~~~~----~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg 363 (437)
+..+.+|.. .....+|+|+++.+-+|+.|..+++||..... +...+.||.+.|.++.|++. +|.+++.|.
T Consensus 255 v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~----~lyklpGh~gsvn~~~Fhp~e~iils~~sdk 330 (338)
T KOG0265|consen 255 VKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRR----ILYKLPGHYGSVNEVDFHPTEPIILSCSSDK 330 (338)
T ss_pred EEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccccc----EEEEcCCcceeEEEeeecCCCcEEEEeccCc
Confidence 777776543 45678999999999999999999999986543 66678999999999999987 999999999
Q ss_pred cEEEe
Q 013717 364 TVRIW 368 (437)
Q Consensus 364 ~i~iw 368 (437)
+|++=
T Consensus 331 ~i~lg 335 (338)
T KOG0265|consen 331 TIYLG 335 (338)
T ss_pred eeEee
Confidence 98864
No 34
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.1e-35 Score=225.28 Aligned_cols=276 Identities=17% Similarity=0.297 Sum_probs=227.3
Q ss_pred eeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCe
Q 013717 90 INSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCK 163 (437)
Q Consensus 90 ~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~ 163 (437)
+...++ .|.++|.++.|+ |+|.++++.| +|++|+...+ ..++++ .+|...|..++.+.+. +++|+.|..
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg--~liktY---sghG~EVlD~~~s~Dnskf~s~GgDk~ 82 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG--ALIKTY---SGHGHEVLDAALSSDNSKFASCGGDKA 82 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc--ceeeee---cCCCceeeeccccccccccccCCCCce
Confidence 345566 999999999999 9999999999 9999999884 556665 6899999999987443 999999999
Q ss_pred EEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCC
Q 013717 164 IRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASD 241 (437)
Q Consensus 164 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~ 241 (437)
+.+||+++++..+.+ .+|.+.|+.+.|+. ..+++|+.|.++++||.+.
T Consensus 83 v~vwDV~TGkv~Rr~------------------------------rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS 132 (307)
T KOG0316|consen 83 VQVWDVNTGKVDRRF------------------------------RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRS 132 (307)
T ss_pred EEEEEcccCeeeeec------------------------------ccccceeeEEEecCcceEEEeccccceeEEEEccc
Confidence 999999999866554 47999999999998 8999999999999999976
Q ss_pred c--ceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC
Q 013717 242 L--RCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR 319 (437)
Q Consensus 242 ~--~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 319 (437)
. ++++.+....+.|.++... +-.|++|+.||+++.||++.+. +.. .-...+|+++.|++|++..++++.|+
T Consensus 133 ~s~ePiQildea~D~V~Si~v~-~heIvaGS~DGtvRtydiR~G~----l~s--Dy~g~pit~vs~s~d~nc~La~~l~s 205 (307)
T KOG0316|consen 133 RSFEPIQILDEAKDGVSSIDVA-EHEIVAGSVDGTVRTYDIRKGT----LSS--DYFGHPITSVSFSKDGNCSLASSLDS 205 (307)
T ss_pred CCCCccchhhhhcCceeEEEec-ccEEEeeccCCcEEEEEeecce----eeh--hhcCCcceeEEecCCCCEEEEeeccc
Confidence 4 6788888888899999885 3349999999999999998654 222 22457899999999999999999999
Q ss_pred cEEEEECCCCccceEEeeeecccccce----EEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCC-eeEEEE
Q 013717 320 SILVWDREDSANHMVVTGALRGHGKAI----LCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKP-VKSLTA 394 (437)
Q Consensus 320 ~i~i~d~~~~~~~~~~~~~~~~~~~~i----~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~-v~~l~~ 394 (437)
++++.|-.+++ +...+.+|...- .|+.-+...+++|++||.|++||+.... .+..+..|... |+++++
T Consensus 206 tlrLlDk~tGk----lL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~---~~sk~~~~~~v~v~dl~~ 278 (307)
T KOG0316|consen 206 TLRLLDKETGK----LLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET---QISKLSVVSTVIVTDLSC 278 (307)
T ss_pred eeeecccchhH----HHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccce---eeeeeccCCceeEEeeec
Confidence 99999999887 555566665543 3333445599999999999999999876 77788878777 899999
Q ss_pred EccCCCCceEEEEEecCCCcEEEEee
Q 013717 395 VTEEGQNGVVSVFSGSLDGEIRAWQV 420 (437)
Q Consensus 395 ~~~~~~~~~~~l~s~~~dg~i~iw~~ 420 (437)
+|.... |+++. ++.+.+|.-
T Consensus 279 hp~~~~-----f~~A~-~~~~~~~~~ 298 (307)
T KOG0316|consen 279 HPTMDD-----FITAT-GHGDLFWYQ 298 (307)
T ss_pred ccCccc-----eeEec-CCceeceee
Confidence 998864 55554 345666643
No 35
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=9.6e-34 Score=249.23 Aligned_cols=275 Identities=33% Similarity=0.563 Sum_probs=229.1
Q ss_pred ec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEE
Q 013717 94 QL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVW 167 (437)
Q Consensus 94 ~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw 167 (437)
.+ +|.++|.+++|+ +++|++++.+ .|++|++.++. ....+ ..|...+..+.|.++. +++++.||.|++|
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~--~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 78 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE--LLRTL---KGHTGPVRDVAASADGTYLASGSSDKTIRLW 78 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC--cEEEE---ecCCcceeEEEECCCCCEEEEEcCCCeEEEE
Confidence 45 899999999999 6999999988 99999998853 22232 4688899999999664 9999999999999
Q ss_pred eCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceE
Q 013717 168 QLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCL 245 (437)
Q Consensus 168 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~ 245 (437)
++.+++....+ ..|...+.++.+.+ .++++++.||.|++||+.+++..
T Consensus 79 ~~~~~~~~~~~------------------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 128 (289)
T cd00200 79 DLETGECVRTL------------------------------TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCL 128 (289)
T ss_pred EcCcccceEEE------------------------------eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEE
Confidence 99876432222 35778999999998 67777777999999999989888
Q ss_pred EEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEE
Q 013717 246 ESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVW 324 (437)
Q Consensus 246 ~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 324 (437)
..+..|...+.+++|+|++. +++++.+|.|++||++.. +....+..|...+.++.|+|+++.+++++.|+.|++|
T Consensus 129 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~ 204 (289)
T cd00200 129 TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG----KCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204 (289)
T ss_pred EEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcccc----ccceeEecCccccceEEECCCcCEEEEecCCCcEEEE
Confidence 88888999999999999887 666666999999998643 3456666788899999999999999999999999999
Q ss_pred ECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCc
Q 013717 325 DREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNG 402 (437)
Q Consensus 325 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 402 (437)
|++.++ ....+..|...+.++.++++ ++++++.||.|++||+..++ ....+..|...|.+++|++++.
T Consensus 205 d~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~--- 274 (289)
T cd00200 205 DLSTGK----CLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE---CVQTLSGHTNSVTSLAWSPDGK--- 274 (289)
T ss_pred ECCCCc----eecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce---eEEEccccCCcEEEEEECCCCC---
Confidence 998754 33344567778988888873 77777779999999998755 6777778999999999999864
Q ss_pred eEEEEEecCCCcEEEEe
Q 013717 403 VVSVFSGSLDGEIRAWQ 419 (437)
Q Consensus 403 ~~~l~s~~~dg~i~iw~ 419 (437)
+|++++.||.|++|+
T Consensus 275 --~l~~~~~d~~i~iw~ 289 (289)
T cd00200 275 --RLASGSADGTIRIWD 289 (289)
T ss_pred --EEEEecCCCeEEecC
Confidence 799999999999996
No 36
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.5e-35 Score=242.46 Aligned_cols=239 Identities=23% Similarity=0.398 Sum_probs=214.8
Q ss_pred CCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717 139 DSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT 216 (437)
Q Consensus 139 ~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 216 (437)
.+|.+.|.|+++.|.. |++|+.|++|+|||+.+++....+. +|...|.
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkltlt------------------------------Ghi~~vr 197 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLT------------------------------GHIETVR 197 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeec------------------------------chhheee
Confidence 7899999999999765 9999999999999999998655443 7999999
Q ss_pred EEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEe
Q 013717 217 GLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATL 293 (437)
Q Consensus 217 ~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 293 (437)
.+++++ .|+++++.|+.|+.||++..+.++.+.+|-..|.|++.+|.-. |++|+.|..+++||+++.. .+..+
T Consensus 198 ~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~----~V~~l 273 (460)
T KOG0285|consen 198 GVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA----SVHVL 273 (460)
T ss_pred eeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc----eEEEe
Confidence 999998 9999999999999999999999999999999999999999887 9999999999999998764 67889
Q ss_pred eCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCC
Q 013717 294 EKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRG 371 (437)
Q Consensus 294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~ 371 (437)
.+|..+|..+.+.|-...+++|+.|++|++||++.++... .+..|...+.+++.++. .+|+++.|. |+-|++.
T Consensus 274 ~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~----tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p 348 (460)
T KOG0285|consen 274 SGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMI----TLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLP 348 (460)
T ss_pred cCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeE----eeecccceeeEEecCCchhhhhccCCcc-ceeccCC
Confidence 9999999999999988899999999999999999887443 34568889999888876 677777774 9999999
Q ss_pred CCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 372 SDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 372 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
.+. .+..+.+|..-|++++...++ ++++|+++|.+.+||-+++-.
T Consensus 349 ~g~---f~~nlsgh~~iintl~~nsD~------v~~~G~dng~~~fwdwksg~n 393 (460)
T KOG0285|consen 349 EGE---FLQNLSGHNAIINTLSVNSDG------VLVSGGDNGSIMFWDWKSGHN 393 (460)
T ss_pred ccc---hhhccccccceeeeeeeccCc------eEEEcCCceEEEEEecCcCcc
Confidence 877 667799999999999999888 899999999999999988754
No 37
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=2.4e-34 Score=226.86 Aligned_cols=272 Identities=21% Similarity=0.350 Sum_probs=228.0
Q ss_pred cceeeccc-cccccccCCCceeEEecCCC--cceeeeec--CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceee
Q 013717 60 LSLQTLPS-VPSLQKLSPDETINFSSASH--LCINSVQL--GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTS 131 (437)
Q Consensus 60 ~~~~~~~~-~~~~~s~s~dg~i~~~~~~~--~~~~~~~~--~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~ 131 (437)
.++..+|. ...+++.+.|..|++|+... ...+...+ +|+..|.++||+ |++||+|+-| ++.||.-..+++++
T Consensus 18 W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efec 97 (312)
T KOG0645|consen 18 WSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFEC 97 (312)
T ss_pred EEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeE
Confidence 45677777 67899999999999999973 46777777 999999999998 9999999999 99999999988888
Q ss_pred eeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeee
Q 013717 132 INTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWI 209 (437)
Q Consensus 132 ~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (437)
+..+ ++|...|.|++|+.++ |++++.|..|-||.+..+....... ++.
T Consensus 98 v~~l---EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~a---------------------------VL~ 147 (312)
T KOG0645|consen 98 VATL---EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIA---------------------------VLQ 147 (312)
T ss_pred Eeee---eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEe---------------------------eec
Confidence 8887 8999999999999554 9999999999999998665444433 335
Q ss_pred cCCCcEEEEEeCC--CeEEEEECCCcEEEEECC---CcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCC
Q 013717 210 EHGDAVTGLAVNN--GLIYSVSWDKSLKIWRAS---DLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFN 283 (437)
Q Consensus 210 ~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~ 283 (437)
+|...|..+.|+| .+|++++.|++|++|+-. ..++++++.+|...|.+++|++.|. +++++.|++++||.....
T Consensus 148 ~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~ 227 (312)
T KOG0645|consen 148 EHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD 227 (312)
T ss_pred cccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC
Confidence 7999999999999 999999999999999866 3478999999999999999999996 999999999999954321
Q ss_pred cccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCc--cc-eEEeeeecccccceEEEEeeCC---EEE
Q 013717 284 EKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSA--NH-MVVTGALRGHGKAILCLINVAG---LLM 357 (437)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--~~-~~~~~~~~~~~~~i~~~~~~~~---~l~ 357 (437)
- -..|..+++.+.|. ...|++++.|+.|++|.-.... .. ..+......|...|+++.+++. +|+
T Consensus 228 ~--------~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~ 297 (312)
T KOG0645|consen 228 L--------SGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLA 297 (312)
T ss_pred c--------chhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCcee
Confidence 1 12367889999998 4489999999999999876421 11 1122244678899999999973 999
Q ss_pred EEeCCCcEEEeeCC
Q 013717 358 SGSADRTVRIWQRG 371 (437)
Q Consensus 358 ~~~~dg~i~iwd~~ 371 (437)
+|+.||.|++|.+.
T Consensus 298 s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 298 SGGDDGIVNFWELE 311 (312)
T ss_pred ecCCCceEEEEEec
Confidence 99999999999875
No 38
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.5e-36 Score=250.92 Aligned_cols=271 Identities=21% Similarity=0.360 Sum_probs=229.8
Q ss_pred cceeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccc
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFN 136 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~ 136 (437)
..+.-.|....+.+++..|.+.+|+.....-......|..+|+++.|+ +.++++|+.+ .|++|+.+-.. ++.+.
T Consensus 100 ~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn---Vk~~~ 176 (464)
T KOG0284|consen 100 NVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN---VKIIQ 176 (464)
T ss_pred eeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh---hHHhh
Confidence 567889999999999999999999985432222222999999999999 9999999999 99999987632 33321
Q ss_pred cCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCc
Q 013717 137 DNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDA 214 (437)
Q Consensus 137 ~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (437)
..|...|++++|+|+- +++++.||+|+|||....+....+ .+|.-.
T Consensus 177 --ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL------------------------------~GHgwd 224 (464)
T KOG0284|consen 177 --AHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVL------------------------------RGHGWD 224 (464)
T ss_pred --HhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhhee------------------------------ccCCCC
Confidence 2366999999999643 999999999999998866543333 479999
Q ss_pred EEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeE
Q 013717 215 VTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIA 291 (437)
Q Consensus 215 v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~ 291 (437)
|.++.|+| .++++|+.|..|++||.++++++.++..|+..|..+.|++++. |++++.|..+++||++.- +.+.
T Consensus 225 VksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m----kEl~ 300 (464)
T KOG0284|consen 225 VKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM----KELF 300 (464)
T ss_pred cceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh----HHHH
Confidence 99999999 9999999999999999999999999999999999999999999 999999999999998733 4677
Q ss_pred EeeCccccEEEEEEcc-CCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEe
Q 013717 292 TLEKHKSAVNALALSD-DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIW 368 (437)
Q Consensus 292 ~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iw 368 (437)
.+++|...++++.|+| ...+|.+|+.||.|..|.+...+. +.....+|...|.++++++- +|++|+.|.++++|
T Consensus 301 ~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p---~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw 377 (464)
T KOG0284|consen 301 TYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEP---LGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFW 377 (464)
T ss_pred HhhcchhhheeeccccccccceeeccCCCceEEEecccccc---ccCCCcccccceeeeeccccceeEeecCCCcceeee
Confidence 8889999999999999 556899999999999999874332 22334679999999999864 99999999999999
Q ss_pred eCCC
Q 013717 369 QRGS 372 (437)
Q Consensus 369 d~~~ 372 (437)
.-..
T Consensus 378 ~r~r 381 (464)
T KOG0284|consen 378 TRNR 381 (464)
T ss_pred ccCC
Confidence 7554
No 39
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.3e-33 Score=251.93 Aligned_cols=318 Identities=18% Similarity=0.254 Sum_probs=255.9
Q ss_pred ceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC--eEEEEeCCCCceeeeecc
Q 013717 61 SLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH--EINVYDRTGTTWTSINTF 135 (437)
Q Consensus 61 ~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d--~v~vwd~~~~~~~~~~~~ 135 (437)
...|++....+++.-.+|...++.+.. ..+++.+ --..+|..++|+ |++||.|+.. .+.||++++.. .+...
T Consensus 270 aa~fH~~t~~lvvgFssG~f~LyelP~-f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEs--YVlKQ 346 (893)
T KOG0291|consen 270 AAAFHKGTNLLVVGFSSGEFGLYELPD-FNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSES--YVLKQ 346 (893)
T ss_pred eeeccCCceEEEEEecCCeeEEEecCC-ceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccc--eeeec
Confidence 558899999999999999999988865 5666777 566889999999 9999999988 99999998842 22222
Q ss_pred ccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCC
Q 013717 136 NDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGD 213 (437)
Q Consensus 136 ~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (437)
++|...+++++++||+ +++|+.||+|++||..++-+...+ ..|..
T Consensus 347 ---QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTF------------------------------teHts 393 (893)
T KOG0291|consen 347 ---QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTF------------------------------TEHTS 393 (893)
T ss_pred ---cccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEe------------------------------ccCCC
Confidence 6899999999999885 999999999999999987544333 36999
Q ss_pred cEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeec-ccccEEEEEEecCCe-EEEEeCC-CeEEEecCCCCcccce
Q 013717 214 AVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKA-HEDAVNAVAVSAGGT-VYTGSAD-RKIRVWAKPFNEKRHA 288 (437)
Q Consensus 214 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~-l~~~~~d-g~v~iwd~~~~~~~~~ 288 (437)
.|+.+.|.. +.+++.+-||+|+.||+...+..+++.. ..-...|++..|.|. +.+|+.| -.|.+|++.++ +
T Consensus 394 ~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG----q 469 (893)
T KOG0291|consen 394 GVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG----Q 469 (893)
T ss_pred ceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC----e
Confidence 999999987 8999999999999999999999888873 345678899999999 5555555 35999977655 5
Q ss_pred eeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeCCCcEE
Q 013717 289 LIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVR 366 (437)
Q Consensus 289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~ 366 (437)
++..+.+|+++|.+++|+|+|..|++++.|.+|++||+-......... .+...++.+++. |..|++++-||.|.
T Consensus 470 llDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl----~i~sdvl~vsfrPdG~elaVaTldgqIt 545 (893)
T KOG0291|consen 470 LLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL----EIRSDVLAVSFRPDGKELAVATLDGQIT 545 (893)
T ss_pred eeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeE----eeccceeEEEEcCCCCeEEEEEecceEE
Confidence 888999999999999999999999999999999999996543222221 234555666655 66999999999999
Q ss_pred EeeCCCCCCeee-----------------eeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCCC
Q 013717 367 IWQRGSDGRFGC-----------------LAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNS 427 (437)
Q Consensus 367 iwd~~~~~~~~~-----------------~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 427 (437)
+||.+.+.+... ...-.+.....+.|++++|+. ++++||....|++|++.++-...
T Consensus 546 f~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~-----~IlAgG~sn~iCiY~v~~~vllk 618 (893)
T KOG0291|consen 546 FFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGK-----CILAGGESNSICIYDVPEGVLLK 618 (893)
T ss_pred EEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCC-----EEEecCCcccEEEEECchhheee
Confidence 999876542110 011112345799999999995 89999999999999999876543
No 40
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=5.8e-34 Score=261.24 Aligned_cols=278 Identities=26% Similarity=0.457 Sum_probs=246.6
Q ss_pred CccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeec-cccCCCCcccEEEEEEe--CCeEEEEecCCeEEEEeCCC
Q 013717 96 GHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINT-FNDNDSSSGSVKSVTFC--DGKIFTAHQDCKIRVWQLTP 171 (437)
Q Consensus 96 ~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~-~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~ 171 (437)
.|...+.|..+.++++++++.+ +|++||...+ ..+.. + .+|.+.|.++++. .+.+++|+.|.++++||..+
T Consensus 206 ~~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~--~~i~~~l---~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 206 TDDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNG--YLILTRL---VGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST 280 (537)
T ss_pred cCcchhhhheeecCeEEecCCCceeEEeecccc--eEEEeec---cCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC
Confidence 3678899999999999999999 9999999985 33333 4 7899999999999 66799999999999999999
Q ss_pred CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEeecc
Q 013717 172 TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAH 251 (437)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 251 (437)
+++...+ .+|...|.++...+..+++|+.|.+|++|+++++.++..+.+|
T Consensus 281 g~C~~~l------------------------------~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h 330 (537)
T KOG0274|consen 281 GECTHSL------------------------------QGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGH 330 (537)
T ss_pred CcEEEEe------------------------------cCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccc
Confidence 9865544 4799999999999999999999999999999999999999999
Q ss_pred cccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCcc
Q 013717 252 EDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSAN 331 (437)
Q Consensus 252 ~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 331 (437)
.++|.++.++ .+.+++|+.|+.|++||+. ..+++..+.+|...|.++.+.+. .++++|+.|++|++||+++..
T Consensus 331 ~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~----~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~- 403 (537)
T KOG0274|consen 331 TGPVNCVQLD-EPLLVSGSYDGTVKVWDPR----TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR- 403 (537)
T ss_pred cccEEEEEec-CCEEEEEecCceEEEEEhh----hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh-
Confidence 9999999998 5559999999999999876 44699999999999999988765 799999999999999998872
Q ss_pred ceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecC-CCCCeeEEEEEccCCCCceEEEEEec
Q 013717 332 HMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEG-HTKPVKSLTAVTEEGQNGVVSVFSGS 410 (437)
Q Consensus 332 ~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~l~s~~ 410 (437)
.....+.+|...+..+...+++|++++.|++|++||..+++ ++.++.+ |.+.|..+++... .+++++
T Consensus 404 --~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~---~~~~~~~~~~~~v~~l~~~~~-------~il~s~ 471 (537)
T KOG0274|consen 404 --KCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGE---CLRTLEGRHVGGVSALALGKE-------EILCSS 471 (537)
T ss_pred --hhhhhhcCCcccccccccccceeEeccccccEEEeecccCc---eeeeeccCCcccEEEeecCcc-------eEEEEe
Confidence 25556788999999999999999999999999999999887 8888888 7789999888721 699999
Q ss_pred CCCcEEEEeeccCCCCC
Q 013717 411 LDGEIRAWQVSVSCPNS 427 (437)
Q Consensus 411 ~dg~i~iw~~~~~~~~~ 427 (437)
.||.+++||+++++...
T Consensus 472 ~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 472 DDGSVKLWDLRSGTLIR 488 (537)
T ss_pred cCCeeEEEecccCchhh
Confidence 99999999999988755
No 41
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3e-34 Score=257.84 Aligned_cols=231 Identities=23% Similarity=0.377 Sum_probs=204.6
Q ss_pred cceeeccccccccccCCCceeEEecCCCc------------------------------ceeeeec-CccCCeEEEEee-
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHL------------------------------CINSVQL-GHKLPIGCIAVH- 107 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~------------------------------~~~~~~~-~h~~~V~~l~~~- 107 (437)
....|.+....++.+-.|..|++|++.+. .....++ ||.++|..+.|+
T Consensus 382 ~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP 461 (707)
T KOG0263|consen 382 TCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP 461 (707)
T ss_pred eeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecc
Confidence 35677788888888888999999998731 1233446 999999999999
Q ss_pred -CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCc
Q 013717 108 -HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPT 183 (437)
Q Consensus 108 -~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 183 (437)
.++|+++++| +||+|.+.+ +..+-.+ .+|..+|..+.|+|.+ ++|++.|++-++|.....+..+
T Consensus 462 d~rfLlScSED~svRLWsl~t--~s~~V~y---~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlR------- 529 (707)
T KOG0263|consen 462 DRRFLLSCSEDSSVRLWSLDT--WSCLVIY---KGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLR------- 529 (707)
T ss_pred cccceeeccCCcceeeeeccc--ceeEEEe---cCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchh-------
Confidence 8999999999 999999999 5555555 6899999999999876 9999999999999988755433
Q ss_pred cccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEe
Q 013717 184 VNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVS 261 (437)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 261 (437)
++.+|-..|.|+.|+| +++++|+.|.+|++||+.+|..++.+.+|.++|.+++|+
T Consensus 530 -----------------------ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~S 586 (707)
T KOG0263|consen 530 -----------------------IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFS 586 (707)
T ss_pred -----------------------hhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEc
Confidence 4458999999999999 999999999999999999999999999999999999999
Q ss_pred cCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 013717 262 AGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDS 329 (437)
Q Consensus 262 ~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 329 (437)
|+|+ |++|+.||.|.+||+..+. .+..+.+|.+.|.++.|+.||..|++|+.|.+|++||+...
T Consensus 587 p~Gr~LaSg~ed~~I~iWDl~~~~----~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 587 PCGRYLASGDEDGLIKIWDLANGS----LVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCCceEeecccCCcEEEEEcCCCc----chhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999 9999999999999998654 67788899999999999999999999999999999999754
No 42
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=6.1e-33 Score=274.72 Aligned_cols=300 Identities=16% Similarity=0.254 Sum_probs=228.1
Q ss_pred CceeEEecCCCcceee----eec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCce--e----eeeccccCCCCc
Q 013717 77 DETINFSSASHLCINS----VQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTW--T----SINTFNDNDSSS 142 (437)
Q Consensus 77 dg~i~~~~~~~~~~~~----~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~--~----~~~~~~~~~~h~ 142 (437)
+|...+|+........ ..+ +|...|.+++|+ +++||+|+.| .|+|||...... . ....+ .+.
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~----~~~ 532 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVEL----ASR 532 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEe----ccc
Confidence 4455556554322211 112 699999999999 8999999999 999999864210 0 11111 245
Q ss_pred ccEEEEEEeCC---eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEE
Q 013717 143 GSVKSVTFCDG---KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLA 219 (437)
Q Consensus 143 ~~v~~l~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 219 (437)
..|.+++|++. .|++++.||+|++||+.+++....+ .+|...|++++
T Consensus 533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~------------------------------~~H~~~V~~l~ 582 (793)
T PLN00181 533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEM------------------------------KEHEKRVWSID 582 (793)
T ss_pred CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEe------------------------------cCCCCCEEEEE
Confidence 68999999842 3999999999999999877543322 36999999999
Q ss_pred eCC---CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEec-CCe-EEEEeCCCeEEEecCCCCcccceeeEEee
Q 013717 220 VNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA-GGT-VYTGSADRKIRVWAKPFNEKRHALIATLE 294 (437)
Q Consensus 220 ~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 294 (437)
|++ .+|++|+.||.|++||+.+++.+..+.. ...|.++.|++ ++. +++|+.||.|++||++... ..+..+.
T Consensus 583 ~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~---~~~~~~~ 658 (793)
T PLN00181 583 YSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK---LPLCTMI 658 (793)
T ss_pred EcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC---ccceEec
Confidence 985 6899999999999999999998888874 46799999964 566 9999999999999987543 2345667
Q ss_pred CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCcc--ceEEeeeecccccceEEEEee--CCEEEEEeCCCcEEEeeC
Q 013717 295 KHKSAVNALALSDDGTVLFSGACDRSILVWDREDSAN--HMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVRIWQR 370 (437)
Q Consensus 295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~ 370 (437)
+|...|.++.|. ++.+|++++.|++|++||++.... .......+.+|...+.++.++ +.+|++|+.|+.|++|+.
T Consensus 659 ~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 659 GHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHK 737 (793)
T ss_pred CCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEEC
Confidence 899999999997 788999999999999999975321 112344577888877776665 559999999999999998
Q ss_pred CCCCCee--------ee--eeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEee
Q 013717 371 GSDGRFG--------CL--AVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420 (437)
Q Consensus 371 ~~~~~~~--------~~--~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 420 (437)
....... .+ .....|...|.+++|++++. +|++|+.||.|++|++
T Consensus 738 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~-----~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 738 AFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSS-----TLVAANSTGNIKILEM 792 (793)
T ss_pred CCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCC-----eEEEecCCCcEEEEec
Confidence 6543110 00 11234566799999999885 7999999999999996
No 43
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.2e-33 Score=249.37 Aligned_cols=294 Identities=20% Similarity=0.362 Sum_probs=243.1
Q ss_pred CCCceeEEecCCCccee--------eeec-CccCCeEEEEee--CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcc
Q 013717 75 SPDETINFSSASHLCIN--------SVQL-GHKLPIGCIAVH--HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSG 143 (437)
Q Consensus 75 s~dg~i~~~~~~~~~~~--------~~~~-~h~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~ 143 (437)
-.+.++.++.++..... ...+ ||...|.+++++ ...+++|+.+.+++|+..+ .++++++ ..+
T Consensus 341 l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t--~kciRTi-----~~~ 413 (888)
T KOG0306|consen 341 LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDT--LKCIRTI-----TCG 413 (888)
T ss_pred eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccC--cceeEEe-----ccc
Confidence 44566776666442222 1233 999999999999 4455555556999999998 6788887 345
Q ss_pred cEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717 144 SVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN 221 (437)
Q Consensus 144 ~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 221 (437)
.+.+..|.|+. ++.|...|.+.++|+.+......+. .|.+.|+.++..
T Consensus 414 y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~------------------------------AHdgaIWsi~~~ 463 (888)
T KOG0306|consen 414 YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR------------------------------AHDGAIWSISLS 463 (888)
T ss_pred cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhh------------------------------ccccceeeeeec
Confidence 88888898654 9999999999999999887655544 499999999998
Q ss_pred C--CeEEEEECCCcEEEEECCC-----cc--e-E-----EEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcc
Q 013717 222 N--GLIYSVSWDKSLKIWRASD-----LR--C-L-----ESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEK 285 (437)
Q Consensus 222 ~--~~l~~~~~dg~i~iwd~~~-----~~--~-~-----~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~ 285 (437)
| ..+++|+.|.+|++||..- +. . + .++ .....|.|+.++||++ ++++--|.+|++|-+++
T Consensus 464 pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtL-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt--- 539 (888)
T KOG0306|consen 464 PDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTL-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT--- 539 (888)
T ss_pred CCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEE-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecc---
Confidence 8 8999999999999999731 11 1 1 122 3467899999999999 88899999999996643
Q ss_pred cceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCC
Q 013717 286 RHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADR 363 (437)
Q Consensus 286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg 363 (437)
.+....+.+|.-+|.||..+||++++++|+.|.+|+||-+.-|. +...+.+|...|+++.|-|+ .+++++.|+
T Consensus 540 -lKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD----CHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~ 614 (888)
T KOG0306|consen 540 -LKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD----CHKSFFAHDDSVMSVQFLPKTHLFFTCGKDG 614 (888)
T ss_pred -eeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccch----hhhhhhcccCceeEEEEcccceeEEEecCcc
Confidence 35777889999999999999999999999999999999998877 44556789999999999887 899999999
Q ss_pred cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717 364 TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 364 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
.|+-||-.. +.++..+.+|...|++++.+|+|+ +++++|.|.+||+|.-..
T Consensus 615 kvKqWDg~k---Fe~iq~L~~H~~ev~cLav~~~G~-----~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 615 KVKQWDGEK---FEEIQKLDGHHSEVWCLAVSPNGS-----FVVSSSHDKSIRLWERTD 665 (888)
T ss_pred eEEeechhh---hhhheeeccchheeeeeEEcCCCC-----eEEeccCCceeEeeeccC
Confidence 999999775 459999999999999999999985 899999999999998665
No 44
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-33 Score=254.13 Aligned_cols=319 Identities=21% Similarity=0.306 Sum_probs=245.0
Q ss_pred cccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeee
Q 013717 58 SNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSIN 133 (437)
Q Consensus 58 ~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~ 133 (437)
...+++|+|+.+.+.+.-.+|.|.+||..- ..++..| +|.++|..++|+ +.++++|++| .|+||+.+. .+++.
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlWDYRM-~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~--rrclf 87 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRM-GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT--RRCLF 87 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeeehhhh-hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccc--ceehh
Confidence 346789999999999999999999999876 4556666 999999999999 8999999999 999999998 56666
Q ss_pred ccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC
Q 013717 134 TFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH 211 (437)
Q Consensus 134 ~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (437)
++ .+|-..|..+.|++.. +++++.|.+|+||+..+++++..+. ||
T Consensus 88 tL---~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavlt------------------------------GH 134 (1202)
T KOG0292|consen 88 TL---LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLT------------------------------GH 134 (1202)
T ss_pred hh---ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEe------------------------------cC
Confidence 66 7999999999999887 9999999999999999987665554 89
Q ss_pred CCcEEEEEeCC--CeEEEEECCCcEEEEECCCcc-----------------------------eEEEeecccccEEEEEE
Q 013717 212 GDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLR-----------------------------CLESIKAHEDAVNAVAV 260 (437)
Q Consensus 212 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-----------------------------~~~~~~~~~~~v~~~~~ 260 (437)
...|.|..|+| ..+++++-|.+||+||+...+ ..+.+.+|...|+-++|
T Consensus 135 nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAf 214 (1202)
T KOG0292|consen 135 NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAF 214 (1202)
T ss_pred ceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEe
Confidence 99999999999 999999999999999985311 12345689999999999
Q ss_pred ecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeee
Q 013717 261 SAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGAL 339 (437)
Q Consensus 261 ~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 339 (437)
+|.-. +++|+.|..|++|.+.. ...-.+.+.++|.+.|.++-|+|...++++.++|++|+|||+...+....+
T Consensus 215 hpTlpliVSG~DDRqVKlWrmne--tKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf---- 288 (1202)
T KOG0292|consen 215 HPTLPLIVSGADDRQVKLWRMNE--TKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF---- 288 (1202)
T ss_pred cCCcceEEecCCcceeeEEEecc--ccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee----
Confidence 99888 99999999999998752 222345677899999999999999999999999999999999765544333
Q ss_pred cccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCC--------------------------eeeeeeecCC---CCC
Q 013717 340 RGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGR--------------------------FGCLAVLEGH---TKP 388 (437)
Q Consensus 340 ~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~--------------------------~~~~~~~~~h---~~~ 388 (437)
+......+.++.+|. ++++|. |+-+.+|.++...+ -..+..++.- ..+
T Consensus 289 rrendRFW~laahP~lNLfAAgH-DsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~ 367 (1202)
T KOG0292|consen 289 RRENDRFWILAAHPELNLFAAGH-DSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQP 367 (1202)
T ss_pred eccCCeEEEEEecCCcceeeeec-CCceEEEEEcccCceEEEcCCEEEEEccceEEeeeccccccceeEeccCCCcccCC
Confidence 223344445554433 444443 33344554442211 0122222222 367
Q ss_pred eeEEEEEccCCCCceEEEEEecCC-CcEEEEeeccC
Q 013717 389 VKSLTAVTEEGQNGVVSVFSGSLD-GEIRAWQVSVS 423 (437)
Q Consensus 389 v~~l~~~~~~~~~~~~~l~s~~~d-g~i~iw~~~~~ 423 (437)
+.++.++|..+- .+++...| |.--++.+...
T Consensus 368 ~~smsYNpae~~----vlics~~~n~~y~L~~ipk~ 399 (1202)
T KOG0292|consen 368 PRSLSYNPAENA----VLICSNLDNGEYELVQIPKD 399 (1202)
T ss_pred cceeeeccccCe----EEEEeccCCCeEEEEEecCc
Confidence 888999998764 55554444 45556665543
No 45
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=2.5e-33 Score=231.15 Aligned_cols=291 Identities=20% Similarity=0.302 Sum_probs=226.3
Q ss_pred cccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--C---CEEEEEecC-eEEEEeCCCCceeeeeccccCCC
Q 013717 68 VPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--H---NFLYAASSH-EINVYDRTGTTWTSINTFNDNDS 140 (437)
Q Consensus 68 ~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~---~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~ 140 (437)
...+++.++||.+++|+... ++..++ ||.++|.++++. . ..+++++.| ++++|.++.++.. ........|
T Consensus 115 ~~~IltgsYDg~~riWd~~G--k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~-~~~~~~~~G 191 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKG--KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK-VKALKVCRG 191 (423)
T ss_pred CceEEEeecCCeeEEEecCC--ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh-hhHHhHhcc
Confidence 67899999999999999864 455666 999999999986 3 459999999 9999999876432 222222358
Q ss_pred CcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717 141 SSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL 218 (437)
Q Consensus 141 h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 218 (437)
|...|.++...++. +++|+.|.+|++|+...... ..+........ -........-.+.....+.+|..+|.++
T Consensus 192 Hk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~-~~~E~~s~~rr----k~~~~~~~~~~r~P~vtl~GHt~~Vs~V 266 (423)
T KOG0313|consen 192 HKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEE-DELESSSNRRR----KKQKREKEGGTRTPLVTLEGHTEPVSSV 266 (423)
T ss_pred cccceeEEEecCCCCeEEeecccceeeecccCCCcc-ccccccchhhh----hhhhhhhcccccCceEEecccccceeeE
Confidence 99999999988554 99999999999999432211 11110000000 0000001111223345668999999999
Q ss_pred EeCC-CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCc
Q 013717 219 AVNN-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKH 296 (437)
Q Consensus 219 ~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 296 (437)
.|.+ ..+++++.|.+|+.||+.++..+.++. ....++++.++|... |++|+.|..+++||.+.+ ........+.+|
T Consensus 267 ~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~-~gs~v~~s~~gH 344 (423)
T KOG0313|consen 267 VWSDATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG-DGSVVSQSLIGH 344 (423)
T ss_pred EEcCCCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCC-CCceeEEeeecc
Confidence 9998 999999999999999999999998887 456799999999888 999999999999999866 334456788899
Q ss_pred cccEEEEEEccC-CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCC
Q 013717 297 KSAVNALALSDD-GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRG 371 (437)
Q Consensus 297 ~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~ 371 (437)
.+.|.++.|+|. ..+|++|+.|+++++||+++.+. ....+.+|...|.++.|... +|++|+.|.+|+|+.-.
T Consensus 345 ~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~---plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 345 KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA---PLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC---cceeeccCCceEEEEeccCCceEEeccCcceEEEeccc
Confidence 999999999995 45788999999999999997653 23346789999999999876 99999999999999754
No 46
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3e-33 Score=244.62 Aligned_cols=266 Identities=19% Similarity=0.342 Sum_probs=229.2
Q ss_pred ccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeec
Q 013717 59 NLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINT 134 (437)
Q Consensus 59 ~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~ 134 (437)
..++.++|..+.+...-++|++.+|+.+. ...+..+ -..-+|.+..|- .+++++|++| .|+||+.++ .+.+..
T Consensus 16 VKsVd~HPtePw~la~LynG~V~IWnyet-qtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt--~ekV~~ 92 (794)
T KOG0276|consen 16 VKSVDFHPTEPWILAALYNGDVQIWNYET-QTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNT--GEKVKT 92 (794)
T ss_pred eeeeecCCCCceEEEeeecCeeEEEeccc-ceeeeeeeecccchhhheeeeccceEEEecCCceEEEEeccc--ceeeEE
Confidence 35789999999999999999999999877 4556666 778899999998 8999999999 999999999 577777
Q ss_pred cccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC
Q 013717 135 FNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG 212 (437)
Q Consensus 135 ~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (437)
| +.|...|++|+.+|.. +++++.|-+|++||.+..- ...++|.+|+
T Consensus 93 F---eAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w-----------------------------a~~qtfeGH~ 140 (794)
T KOG0276|consen 93 F---EAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW-----------------------------ACEQTFEGHE 140 (794)
T ss_pred e---eccccceeeeeecCCCCeEEecCCccEEEEeeccCce-----------------------------eeeeEEcCcc
Confidence 7 7899999999999987 9999999999999998652 1124556899
Q ss_pred CcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe---EEEEeCCCeEEEecCCCCccc
Q 013717 213 DAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT---VYTGSADRKIRVWAKPFNEKR 286 (437)
Q Consensus 213 ~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~---l~~~~~dg~v~iwd~~~~~~~ 286 (437)
..|.+++|+| +.+++++-|++|++|.+....+..++++|...|+|+.+-+.|. +++|+.|..|+|||..+.
T Consensus 141 HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk--- 217 (794)
T KOG0276|consen 141 HYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK--- 217 (794)
T ss_pred eEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH---
Confidence 9999999999 8999999999999999999999999999999999999998773 999999999999987654
Q ss_pred ceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeCCCc
Q 013717 287 HALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSADRT 364 (437)
Q Consensus 287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~ 364 (437)
.+++++++|...|..+.|+|.-..+++|++||+++||+..+-+ +...+.-....+.|++.. .+.++.|..+|.
T Consensus 218 -~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~----lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~ 292 (794)
T KOG0276|consen 218 -SCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYK----LEKTLNYGLERVWCIAAHKGDGKIAVGFDEGS 292 (794)
T ss_pred -HHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCccee----hhhhhhcCCceEEEEeecCCCCeEEEeccCCc
Confidence 4889999999999999999999999999999999999987654 333344456778888754 337777777775
Q ss_pred EEE
Q 013717 365 VRI 367 (437)
Q Consensus 365 i~i 367 (437)
|.+
T Consensus 293 i~v 295 (794)
T KOG0276|consen 293 VTV 295 (794)
T ss_pred EEE
Confidence 543
No 47
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-33 Score=219.75 Aligned_cols=273 Identities=22% Similarity=0.346 Sum_probs=223.6
Q ss_pred EEEEee---CCEEEEEe-------cC-eEEEEeCCC-CceeeeeccccCCCCcccEEEEEEeCCe---EEEEecCCeEEE
Q 013717 102 GCIAVH---HNFLYAAS-------SH-EINVYDRTG-TTWTSINTFNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRV 166 (437)
Q Consensus 102 ~~l~~~---~~~l~s~~-------~d-~v~vwd~~~-~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~i 166 (437)
.++.|+ .++||.+. .+ .+.|.++.. +.......+ .-...+..++|+++. +++++.||.+++
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~----d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl 87 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSY----DTEDGLFDVAWSENHENQVIAASGDGSLRL 87 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEee----ecccceeEeeecCCCcceEEEEecCceEEE
Confidence 466777 55555443 23 889999863 333444443 356889999999554 999999999999
Q ss_pred EeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcc
Q 013717 167 WQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLR 243 (437)
Q Consensus 167 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~ 243 (437)
||+..... +...++.|..+|.++.+++ ..+++++.|++|++|+....+
T Consensus 88 ~d~~~~s~-----------------------------Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~ 138 (311)
T KOG0277|consen 88 FDLTMPSK-----------------------------PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN 138 (311)
T ss_pred eccCCCCc-----------------------------chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc
Confidence 99543321 1233457999999999998 778888999999999999999
Q ss_pred eEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEcc-CCCEEEEEeCCCc
Q 013717 244 CLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSD-DGTVLFSGACDRS 320 (437)
Q Consensus 244 ~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~ 320 (437)
.+.++.+|..-|...+|+|.-. +++++.|+.+++||++... +.+. +..|...|.++.|+. +.+.+++|+.|+.
T Consensus 139 Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g---k~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~ 214 (311)
T KOG0277|consen 139 SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG---KFMS-IEAHNSEILCCDWSKYNHNVLATGGVDNL 214 (311)
T ss_pred ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC---ceeE-EEeccceeEeecccccCCcEEEecCCCce
Confidence 9999999999999999999654 9999999999999987654 3333 778999999999998 6679999999999
Q ss_pred EEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEcc
Q 013717 321 ILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTE 397 (437)
Q Consensus 321 i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 397 (437)
|++||++..+. ....+.+|.-.|..+.+++. +|++++.|-++||||...+. .++.+...|..-|..+.|++-
T Consensus 215 vr~wDir~~r~---pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--s~~e~~~~HtEFv~g~Dws~~ 289 (311)
T KOG0277|consen 215 VRGWDIRNLRT---PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--SAIETVDHHTEFVCGLDWSLF 289 (311)
T ss_pred EEEEehhhccc---cceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--hhhhhhhccceEEeccccccc
Confidence 99999987653 34556899999999999876 99999999999999998655 477778889999999999998
Q ss_pred CCCCceEEEEEecCCCcEEEEee
Q 013717 398 EGQNGVVSVFSGSLDGEIRAWQV 420 (437)
Q Consensus 398 ~~~~~~~~l~s~~~dg~i~iw~~ 420 (437)
.+. ++++++.|+.++||+.
T Consensus 290 ~~~----~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 290 DPG----QVASTGWDELLYVWNP 308 (311)
T ss_pred cCc----eeeecccccceeeecc
Confidence 765 8999999999999984
No 48
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.2e-34 Score=247.85 Aligned_cols=241 Identities=27% Similarity=0.408 Sum_probs=214.2
Q ss_pred CCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717 139 DSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT 216 (437)
Q Consensus 139 ~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 216 (437)
..++..|.++.++|.. ++++-.+|.|.|||.++....+.+. -...+|.
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfe------------------------------V~~~PvR 59 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFE------------------------------VSEVPVR 59 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeee------------------------------ecccchh
Confidence 3588999999999987 8899999999999999876554443 2456788
Q ss_pred EEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEe
Q 013717 217 GLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATL 293 (437)
Q Consensus 217 ~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 293 (437)
+..|-. +.+++|+.|..|+||+..+++.+..+..|.+.|.+++.+|... +++++.|-.|++||.+ ..+.+.+.+
T Consensus 60 a~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we---~~wa~~qtf 136 (794)
T KOG0276|consen 60 AAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWE---NEWACEQTF 136 (794)
T ss_pred hheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeecc---CceeeeeEE
Confidence 888876 9999999999999999999999999999999999999999888 9999999999999965 455788999
Q ss_pred eCccccEEEEEEcc-CCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC----EEEEEeCCCcEEEe
Q 013717 294 EKHKSAVNALALSD-DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG----LLMSGSADRTVRIW 368 (437)
Q Consensus 294 ~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~l~~~~~dg~i~iw 368 (437)
++|...|.+++|.| |.+.+++++.|++|+||.+.+.... .++.+|...|.|+.+-+. +|++|+.|.+|+||
T Consensus 137 eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n----fTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvW 212 (794)
T KOG0276|consen 137 EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN----FTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVW 212 (794)
T ss_pred cCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCc----eeeeccccCcceEEeccCCCcceEEecCCCceEEEe
Confidence 99999999999999 6679999999999999999876644 346789999999998633 99999999999999
Q ss_pred eCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 369 QRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 369 d~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
|..+.. |++++.||...|..+.|+|.-+ +++|||+||++|||+-.+-+
T Consensus 213 DyQtk~---CV~TLeGHt~Nvs~v~fhp~lp-----iiisgsEDGTvriWhs~Ty~ 260 (794)
T KOG0276|consen 213 DYQTKS---CVQTLEGHTNNVSFVFFHPELP-----IIISGSEDGTVRIWNSKTYK 260 (794)
T ss_pred ecchHH---HHHHhhcccccceEEEecCCCc-----EEEEecCCccEEEecCccee
Confidence 999876 9999999999999999999986 89999999999999876644
No 49
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1e-32 Score=250.28 Aligned_cols=284 Identities=21% Similarity=0.374 Sum_probs=242.3
Q ss_pred CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCC
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLT 170 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~ 170 (437)
..+..|..++|+ ..+++++-.. .|++||..- ...+..| ..|.++|..++|++.+ +++|+.|-+|++|+..
T Consensus 7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM--~tli~rF---deHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRM--GTLIDRF---DEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred cccccccceecCCCCCEEEEeecCceeeeehhhh--hhHHhhh---hccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 456788999999 6778888777 999999987 3556666 7899999999999887 9999999999999999
Q ss_pred CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEe
Q 013717 171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESI 248 (437)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~ 248 (437)
+.++...+ .+|-+.|..+.|++ ..+++++.|.+|+||+.++++++..+
T Consensus 82 ~rrclftL------------------------------~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl 131 (1202)
T KOG0292|consen 82 TRRCLFTL------------------------------LGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL 131 (1202)
T ss_pred cceehhhh------------------------------ccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE
Confidence 87655443 37999999999998 99999999999999999999999999
Q ss_pred ecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcc-------------------------cceeeEEeeCccccEEE
Q 013717 249 KAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEK-------------------------RHALIATLEKHKSAVNA 302 (437)
Q Consensus 249 ~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~-------------------------~~~~~~~~~~~~~~i~~ 302 (437)
.+|...|.|..|+|... +++++.|.+|++||+..-.. .......+++|...|+-
T Consensus 132 tGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNw 211 (1202)
T KOG0292|consen 132 TGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNW 211 (1202)
T ss_pred ecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccce
Confidence 99999999999999666 99999999999999852110 11223457899999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC--CEEEEEeCCCcEEEeeCCCCCCeeeee
Q 013717 303 LALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA--GLLMSGSADRTVRIWQRGSDGRFGCLA 380 (437)
Q Consensus 303 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~ 380 (437)
++|+|.-.+|++|+.|..|++|.+...+- + -.....+|...|.++-|++ +++++.++|+.|+|||+.... .+.
T Consensus 212 aAfhpTlpliVSG~DDRqVKlWrmnetKa-W-EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt---~v~ 286 (1202)
T KOG0292|consen 212 AAFHPTLPLIVSGADDRQVKLWRMNETKA-W-EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRT---SVQ 286 (1202)
T ss_pred EEecCCcceEEecCCcceeeEEEeccccc-e-eehhhhcccCCcceEEecCccceeEecCCCccEEEEeccccc---cee
Confidence 99999999999999999999999875432 2 3345689999999999998 599999999999999999766 788
Q ss_pred eecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 381 VLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 381 ~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
+++...+.-+.++.+|..+ |++++-|+-+.+|.++-..|
T Consensus 287 tfrrendRFW~laahP~lN------LfAAgHDsGm~VFkleRErp 325 (1202)
T KOG0292|consen 287 TFRRENDRFWILAAHPELN------LFAAGHDSGMIVFKLERERP 325 (1202)
T ss_pred eeeccCCeEEEEEecCCcc------eeeeecCCceEEEEEcccCc
Confidence 8887788999999999885 77777888888999886654
No 50
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-33 Score=219.65 Aligned_cols=276 Identities=17% Similarity=0.264 Sum_probs=219.5
Q ss_pred CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC--eEEEEecCCeEEEEeCC
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG--KIFTAHQDCKIRVWQLT 170 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~~~dg~i~iwd~~ 170 (437)
||..+++.+.|+ |++|++++.| ++.||-...| +.+.++ .+|++.|.|+..+.+ .+++|+.|.++++||++
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG--erlGty---~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG--ERLGTY---DGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEecCC--ceeeee---cCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 999999999999 9999999999 9999988664 456665 799999999999843 49999999999999999
Q ss_pred CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE-----CCCcEEEEECC---
Q 013717 171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS-----WDKSLKIWRAS--- 240 (437)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-----~dg~i~iwd~~--- 240 (437)
+++.+.... ...+|..+.|+. ++++... ..+.|.++|++
T Consensus 83 tGk~la~~k-------------------------------~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~ 131 (327)
T KOG0643|consen 83 TGKQLATWK-------------------------------TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDS 131 (327)
T ss_pred CCcEEEEee-------------------------------cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence 998766554 567889999987 4444443 24679999998
Q ss_pred ----CcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEE
Q 013717 241 ----DLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSG 315 (437)
Q Consensus 241 ----~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 315 (437)
..++...+..+...++.+-|.|-++ |++|..||.|..||++++. +.+...+.|...|+.|++++|..+++++
T Consensus 132 ~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~---~~v~s~~~h~~~Ind~q~s~d~T~FiT~ 208 (327)
T KOG0643|consen 132 SDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK---ELVDSDEEHSSKINDLQFSRDRTYFITG 208 (327)
T ss_pred hhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc---eeeechhhhccccccccccCCcceEEec
Confidence 4456777777889999999999998 9999999999999998765 4666667899999999999999999999
Q ss_pred eCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCc--------------EEEeeCCCCCCeeee
Q 013717 316 ACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRT--------------VRIWQRGSDGRFGCL 379 (437)
Q Consensus 316 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~--------------i~iwd~~~~~~~~~~ 379 (437)
+.|.+-++||+++.+....+. ...++.+.+..+. .++.|+.... .++|++-.. +.+
T Consensus 209 s~Dttakl~D~~tl~v~Kty~-----te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~e---EEi 280 (327)
T KOG0643|consen 209 SKDTTAKLVDVRTLEVLKTYT-----TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFE---EEI 280 (327)
T ss_pred ccCccceeeeccceeeEEEee-----ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHH---HHh
Confidence 999999999998765333322 2456666666553 4544443221 122222221 256
Q ss_pred eeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717 380 AVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 380 ~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
...++|.++|++++|+|++. ..++|++||.||+.-++..
T Consensus 281 grvkGHFGPINsvAfhPdGk-----sYsSGGEDG~VR~h~Fd~~ 319 (327)
T KOG0643|consen 281 GRVKGHFGPINSVAFHPDGK-----SYSSGGEDGYVRLHHFDSN 319 (327)
T ss_pred ccccccccCcceeEECCCCc-----ccccCCCCceEEEEEeccc
Confidence 78899999999999999995 6999999999999877653
No 51
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=1.3e-32 Score=252.33 Aligned_cols=269 Identities=23% Similarity=0.365 Sum_probs=235.2
Q ss_pred cccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcc
Q 013717 68 VPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSG 143 (437)
Q Consensus 68 ~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~ 143 (437)
...+.+.+.+.+|.+|+......+...+ ||.+.|.++++. +++|++|+.| +++|||..++ .+...+ .+|..
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg--~C~~~l---~gh~s 292 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG--ECTHSL---QGHTS 292 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC--cEEEEe---cCCCc
Confidence 6678889999999999998877777767 999999999999 9999999999 9999999995 555565 58999
Q ss_pred cEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCC
Q 013717 144 SVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNG 223 (437)
Q Consensus 144 ~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 223 (437)
.|.++...+..+++|+.|.+|++|+++++.....+. +|..+|.++..+..
T Consensus 293 tv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~------------------------------~h~~~V~~v~~~~~ 342 (537)
T KOG0274|consen 293 SVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLR------------------------------GHTGPVNCVQLDEP 342 (537)
T ss_pred eEEEEEccCceEeeccCCceEEEEeccCcceEEEec------------------------------cccccEEEEEecCC
Confidence 999999999999999999999999999876554443 59999999999999
Q ss_pred eEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEE
Q 013717 224 LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNAL 303 (437)
Q Consensus 224 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 303 (437)
++++|+.||+|++||+.+++++..+.+|...|.++.+.+...+++|+.|+.|++||++... +++..+.+|.+-+..+
T Consensus 343 ~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~---~c~~tl~~h~~~v~~l 419 (537)
T KOG0274|consen 343 LLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKR---KCIHTLQGHTSLVSSL 419 (537)
T ss_pred EEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCcceEEeeeeccceEeecCCchh---hhhhhhcCCccccccc
Confidence 9999999999999999999999999999999999988766559999999999999987653 5788888899888776
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeee
Q 013717 304 ALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVL 382 (437)
Q Consensus 304 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 382 (437)
.+. +++|++++.|++|++||...+++...+... |...+.++......+++++.||.+++||++++. +...+
T Consensus 420 ~~~--~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~---~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~---~~~~l 490 (537)
T KOG0274|consen 420 LLR--DNFLVSSSADGTIKLWDAEEGECLRTLEGR---HVGGVSALALGKEEILCSSDDGSVKLWDLRSGT---LIRTL 490 (537)
T ss_pred ccc--cceeEeccccccEEEeecccCceeeeeccC---CcccEEEeecCcceEEEEecCCeeEEEecccCc---hhhhh
Confidence 664 779999999999999999988755544332 678888888877799999999999999999987 44444
No 52
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.1e-32 Score=222.89 Aligned_cols=285 Identities=15% Similarity=0.228 Sum_probs=229.4
Q ss_pred eeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEE
Q 013717 92 SVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIR 165 (437)
Q Consensus 92 ~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~ 165 (437)
...| .|+++|.+++.+ .++++||+.| .-.+|++.++.+... + .+|+..|+++.|+.++ |+||+.+|.|+
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~e--l---tgHKDSVt~~~FshdgtlLATGdmsG~v~ 131 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGE--L---TGHKDSVTCCSFSHDGTLLATGDMSGKVL 131 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeE--e---cCCCCceEEEEEccCceEEEecCCCccEE
Confidence 4566 999999999999 7899999999 999999999764333 3 5799999999999554 99999999999
Q ss_pred EEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcc
Q 013717 166 VWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLR 243 (437)
Q Consensus 166 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~ 243 (437)
||+..++.....+. ..-..|.=+.|+| ..|++|+.||.+-+|.+.+..
T Consensus 132 v~~~stg~~~~~~~------------------------------~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~ 181 (399)
T KOG0296|consen 132 VFKVSTGGEQWKLD------------------------------QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA 181 (399)
T ss_pred EEEcccCceEEEee------------------------------cccCceEEEEecccccEEEeecCCCcEEEEECCCcc
Confidence 99999886443332 2445667788898 899999999999999999988
Q ss_pred eEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEee-CccccEEEEEEccCCCEEEEEeCCCcE
Q 013717 244 CLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLE-KHKSAVNALALSDDGTVLFSGACDRSI 321 (437)
Q Consensus 244 ~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i 321 (437)
..+.+.+|..++++-.|.|+|+ ++++..||+|++||..+.. ++..+. .......++.++..+..++.|+.++.+
T Consensus 182 ~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~----p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~ 257 (399)
T KOG0296|consen 182 LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ----PLHKITQAEGLELPCISLNLAGSTLTKGNSEGVA 257 (399)
T ss_pred eeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCc----eeEEecccccCcCCccccccccceeEeccCCccE
Confidence 8899999999999999999999 9999999999999887654 444433 234567788999999999999999999
Q ss_pred EEEECCCCccceEEee----eecccccceEEEE---eeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEE
Q 013717 322 LVWDREDSANHMVVTG----ALRGHGKAILCLI---NVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSL 392 (437)
Q Consensus 322 ~i~d~~~~~~~~~~~~----~~~~~~~~i~~~~---~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l 392 (437)
++-+..+++....... ....+...+-++. ++.. +.|+|+-||+|.|||+.... ++..-.|..+|+.+
T Consensus 258 ~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~----~R~~c~he~~V~~l 333 (399)
T KOG0296|consen 258 CGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST----LRHICEHEDGVTKL 333 (399)
T ss_pred EEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccch----hheeccCCCceEEE
Confidence 9998887764433321 0112333333333 3333 88999999999999998744 45556699999999
Q ss_pred EEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 393 TAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 393 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
.|.++. +|++++.||.|+.||.+++..
T Consensus 334 ~w~~t~------~l~t~c~~g~v~~wDaRtG~l 360 (399)
T KOG0296|consen 334 KWLNTD------YLLTACANGKVRQWDARTGQL 360 (399)
T ss_pred EEcCcc------hheeeccCceEEeeeccccce
Confidence 999943 899999999999999999865
No 53
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.5e-33 Score=239.49 Aligned_cols=269 Identities=19% Similarity=0.248 Sum_probs=226.7
Q ss_pred cceeecc-ccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeec
Q 013717 60 LSLQTLP-SVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINT 134 (437)
Q Consensus 60 ~~~~~~~-~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~ 134 (437)
.++.+.| ...++++.+.|+.|.+|++.....+++++ ||..+|.+++|+ |..+.+++.| .|++||.++| ++...
T Consensus 218 sai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG--~~~~~ 295 (503)
T KOG0282|consen 218 SAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETG--QVLSR 295 (503)
T ss_pred chhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccc--eEEEE
Confidence 4667778 88899999999999999998899999999 999999999999 9999999999 9999999996 45555
Q ss_pred cccCCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC
Q 013717 135 FNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH 211 (437)
Q Consensus 135 ~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (437)
+ .-...+.|+.|.|+. +++|+.|+.|+.||+++++..+.+. .|
T Consensus 296 f----~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd------------------------------~h 341 (503)
T KOG0282|consen 296 F----HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD------------------------------RH 341 (503)
T ss_pred E----ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH------------------------------hh
Confidence 4 134577899998654 9999999999999999998666554 48
Q ss_pred CCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee-cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccc
Q 013717 212 GDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK-AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRH 287 (437)
Q Consensus 212 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~ 287 (437)
-+.|..+.|-+ ..+++.+.|++++||+.+..-.+..+. .......++..+|++. +++-+.|+.|.+|.+.. .-..
T Consensus 342 Lg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~-~~r~ 420 (503)
T KOG0282|consen 342 LGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVP-PFRL 420 (503)
T ss_pred hhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccc-cccc
Confidence 89999999987 899999999999999998876665443 3344677899999999 88899999999997542 2222
Q ss_pred eeeEEeeCcc--ccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEEeCC
Q 013717 288 ALIATLEKHK--SAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGSAD 362 (437)
Q Consensus 288 ~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~d 362 (437)
...+.+++|. +.-..+.|||||.+|++|+.||.+.+||.++.+ +...+.+|...+..+.|++. .+|+++.|
T Consensus 421 nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~k----l~~~lkah~~~ci~v~wHP~e~Skvat~~w~ 496 (503)
T KOG0282|consen 421 NKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTK----LVSKLKAHDQPCIGVDWHPVEPSKVATCGWD 496 (503)
T ss_pred CHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhh----hhhccccCCcceEEEEecCCCcceeEecccC
Confidence 3344566665 456788999999999999999999999998765 55667889999999999876 99999999
Q ss_pred CcEEEee
Q 013717 363 RTVRIWQ 369 (437)
Q Consensus 363 g~i~iwd 369 (437)
|.|++||
T Consensus 497 G~Ikiwd 503 (503)
T KOG0282|consen 497 GLIKIWD 503 (503)
T ss_pred ceeEecC
Confidence 9999996
No 54
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.9e-32 Score=210.15 Aligned_cols=243 Identities=21% Similarity=0.365 Sum_probs=204.2
Q ss_pred CCCcccEEEEEEeCC--eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717 139 DSSSGSVKSVTFCDG--KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT 216 (437)
Q Consensus 139 ~~h~~~v~~l~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 216 (437)
..++++|.++.|+-+ ..++++.|.+|++|+...+..++.. .+|..+|.
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktY------------------------------sghG~EVl 63 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTY------------------------------SGHGHEVL 63 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeee------------------------------cCCCceee
Confidence 679999999999943 4999999999999999888655544 37999999
Q ss_pred EEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEe
Q 013717 217 GLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATL 293 (437)
Q Consensus 217 ~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 293 (437)
.++... ..+++|+.|..+.+||+.+|+.++.+.+|.+.|+.++|+.+.. +++|+.|..+++||.+.. ..++++.+
T Consensus 64 D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~--s~ePiQil 141 (307)
T KOG0316|consen 64 DAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR--SFEPIQIL 141 (307)
T ss_pred eccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccC--CCCccchh
Confidence 887755 8999999999999999999999999999999999999998888 999999999999999754 34677788
Q ss_pred eCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCC
Q 013717 294 EKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSD 373 (437)
Q Consensus 294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~ 373 (437)
......|.++... +..|++|+.||+++.||++.+. +...+.+|.....+++.+++..++++.|+++++.|-.++
T Consensus 142 dea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~----l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG 215 (307)
T KOG0316|consen 142 DEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGT----LSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG 215 (307)
T ss_pred hhhcCceeEEEec--ccEEEeeccCCcEEEEEeecce----eehhhcCCcceeEEecCCCCEEEEeeccceeeecccchh
Confidence 8788899999987 6689999999999999998876 444445555444445555679999999999999999998
Q ss_pred CCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 374 GRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 374 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
+ ++..+++|.+.-..+..+-.... ..+++|++||.|++||+..+..
T Consensus 216 k---lL~sYkGhkn~eykldc~l~qsd---thV~sgSEDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 216 K---LLKSYKGHKNMEYKLDCCLNQSD---THVFSGSEDGKVYFWDLVDETQ 261 (307)
T ss_pred H---HHHHhcccccceeeeeeeecccc---eeEEeccCCceEEEEEecccee
Confidence 8 89999999887666655543322 3799999999999999987653
No 55
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=8.4e-33 Score=215.72 Aligned_cols=276 Identities=21% Similarity=0.331 Sum_probs=227.5
Q ss_pred CccCCeEEEEee-----CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEE
Q 013717 96 GHKLPIGCIAVH-----HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVW 167 (437)
Q Consensus 96 ~h~~~V~~l~~~-----~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw 167 (437)
||+.+|..++|+ |-+|++++.| .-.+-+-+++.| +.+| ++|.+.|...+.+.+. -++++.|-+-++|
T Consensus 12 ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw--igtf---eghkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 12 GHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW--IGTF---EGHKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred CCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc--EEee---eccCcceeeeecCchhhhhhhhcccchhhhh
Confidence 999999999999 7899999999 777777777655 4555 7899999999998765 7788999999999
Q ss_pred eCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcc-e
Q 013717 168 QLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLR-C 244 (437)
Q Consensus 168 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-~ 244 (437)
|.-++..+..+. |..-|.+++|+. ++|++|+.+..+||||++..+ +
T Consensus 87 ~a~tgdelhsf~-------------------------------hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap 135 (334)
T KOG0278|consen 87 DAVTGDELHSFE-------------------------------HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP 135 (334)
T ss_pred hhhhhhhhhhhh-------------------------------hhheeeeEEecccchhhhccchHHHhhhhhccCCCCC
Confidence 999987665554 888999999998 999999999999999997654 5
Q ss_pred EEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEE
Q 013717 245 LESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILV 323 (437)
Q Consensus 245 ~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 323 (437)
...+.+|.+.|..+.|....+ |++.+.|++||+||.+++. .++.+. ...+|+++..+++|++|.++ ..+.|.+
T Consensus 136 p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt----~v~sL~-~~s~VtSlEvs~dG~ilTia-~gssV~F 209 (334)
T KOG0278|consen 136 PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT----EVQSLE-FNSPVTSLEVSQDGRILTIA-YGSSVKF 209 (334)
T ss_pred chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc----EEEEEe-cCCCCcceeeccCCCEEEEe-cCceeEE
Confidence 667789999999999987777 9999999999999988775 455554 56789999999999887766 4567999
Q ss_pred EECCCCccceEEeeeecccccceEEEEe--eCCEEEEEeCCCcEEEeeCCCCCCeeeeee-ecCCCCCeeEEEEEccCCC
Q 013717 324 WDREDSANHMVVTGALRGHGKAILCLIN--VAGLLMSGSADRTVRIWQRGSDGRFGCLAV-LEGHTKPVKSLTAVTEEGQ 400 (437)
Q Consensus 324 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~ 400 (437)
||..+........ ....|.+.+. ....+++|++|..++.||..++. .+.. -++|.++|.|+.|+|++.
T Consensus 210 wdaksf~~lKs~k-----~P~nV~SASL~P~k~~fVaGged~~~~kfDy~Tge---Ei~~~nkgh~gpVhcVrFSPdGE- 280 (334)
T KOG0278|consen 210 WDAKSFGLLKSYK-----MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGE---EIGSYNKGHFGPVHCVRFSPDGE- 280 (334)
T ss_pred eccccccceeecc-----CccccccccccCCCceEEecCcceEEEEEeccCCc---eeeecccCCCCceEEEEECCCCc-
Confidence 9998755322221 2334444444 44599999999999999999988 4444 489999999999999995
Q ss_pred CceEEEEEecCCCcEEEEeeccCCCC
Q 013717 401 NGVVSVFSGSLDGEIRAWQVSVSCPN 426 (437)
Q Consensus 401 ~~~~~l~s~~~dg~i~iw~~~~~~~~ 426 (437)
..++||.||+||+|....++..
T Consensus 281 ----~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 281 ----LYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred ----eeeccCCCceEEEEEecCCCch
Confidence 7999999999999999877654
No 56
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2e-31 Score=245.66 Aligned_cols=270 Identities=24% Similarity=0.447 Sum_probs=223.9
Q ss_pred cceeeccccccccccCCCceeEEecCCCcc-eeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeec
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLC-INSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINT 134 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~-~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~ 134 (437)
..+.|++....+++.+.++.+.+|...... ...+.+ +|...|.+++|+ ++++++++.| +|+|||+... ...+++
T Consensus 163 ~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~-~~~~~~ 241 (456)
T KOG0266|consen 163 TCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD-GRNLKT 241 (456)
T ss_pred EEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC-CeEEEE
Confidence 456889999999999999999999995544 356666 999999999999 8899999999 9999999432 355666
Q ss_pred cccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC
Q 013717 135 FNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG 212 (437)
Q Consensus 135 ~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (437)
+ .+|...|++++|++.. +++|+.|++|++||+++++....+ .+|.
T Consensus 242 l---~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l------------------------------~~hs 288 (456)
T KOG0266|consen 242 L---KGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKL------------------------------KGHS 288 (456)
T ss_pred e---cCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEee------------------------------eccC
Confidence 6 6899999999999665 999999999999999987654444 4799
Q ss_pred CcEEEEEeCC--CeEEEEECCCcEEEEECCCcc--eEEEeeccccc--EEEEEEecCCe-EEEEeCCCeEEEecCCCCcc
Q 013717 213 DAVTGLAVNN--GLIYSVSWDKSLKIWRASDLR--CLESIKAHEDA--VNAVAVSAGGT-VYTGSADRKIRVWAKPFNEK 285 (437)
Q Consensus 213 ~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~--v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~ 285 (437)
+.|++++|++ ++|++++.|+.|++||+.++. +...+..+... ++++.|+|++. +++++.|+.+++||+....
T Consensus 289 ~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~- 367 (456)
T KOG0266|consen 289 DGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK- 367 (456)
T ss_pred CceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCc-
Confidence 9999999998 999999999999999999998 56677655554 99999999999 9999999999999987543
Q ss_pred cceeeEEeeCccc---cEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeeccc-ccceEEEEeeC--CEEEEE
Q 013717 286 RHALIATLEKHKS---AVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH-GKAILCLINVA--GLLMSG 359 (437)
Q Consensus 286 ~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~i~~~~~~~--~~l~~~ 359 (437)
....+.+|.. .+.+..+++.+.++++|+.|+.|++||+.++. ....+.+| ...+..+.+++ ++++++
T Consensus 368 ---~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~----~~~~l~~h~~~~~~~~~~~~~~~~~~s~ 440 (456)
T KOG0266|consen 368 ---SVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG----ILQRLEGHSKAAVSDLSSHPTENLIASS 440 (456)
T ss_pred ---ceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc----hhhhhcCCCCCceeccccCCCcCeeeec
Confidence 4555666665 45555667899999999999999999998755 34445677 77777777664 488888
Q ss_pred e--CCCcEEEeeCC
Q 013717 360 S--ADRTVRIWQRG 371 (437)
Q Consensus 360 ~--~dg~i~iwd~~ 371 (437)
+ .|+.+++|...
T Consensus 441 s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 441 SFEGDGLIRLWKYD 454 (456)
T ss_pred CcCCCceEEEecCC
Confidence 8 68999999754
No 57
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.4e-30 Score=210.06 Aligned_cols=268 Identities=18% Similarity=0.315 Sum_probs=211.3
Q ss_pred EEEEecC-eEEEEeCCCCc------e-eeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccC
Q 013717 111 LYAASSH-EINVYDRTGTT------W-TSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLP 182 (437)
Q Consensus 111 l~s~~~d-~v~vwd~~~~~------~-~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 182 (437)
+++|+.. .|.-+++.-.. . -.+..+..+..|.+.|++++.+.-.+++|+.|.+|+|||+........+.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~ll--- 80 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGILL--- 80 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhccee---
Confidence 5667777 66667665321 0 11122334478999999999999999999999999999999876544432
Q ss_pred ccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC----CeEEEEECCCcEEEEECCCcceEEEeecccccEEEE
Q 013717 183 TVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN----GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAV 258 (437)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 258 (437)
.|.+.|+++.|.+ ..|++|+.||.|.+|+....+++..+++|.+.|+.+
T Consensus 81 ---------------------------~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~l 133 (362)
T KOG0294|consen 81 ---------------------------SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDL 133 (362)
T ss_pred ---------------------------ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccccccccee
Confidence 5999999999987 489999999999999999999999999999999999
Q ss_pred EEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEee
Q 013717 259 AVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTG 337 (437)
Q Consensus 259 ~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 337 (437)
+++|.++ -++.+.|+.+++||+-.+.... +..+ ....+.+.|+|.|.+++.+..++ |-||.+.+.......
T Consensus 134 siHPS~KLALsVg~D~~lr~WNLV~Gr~a~--v~~L---~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i-- 205 (362)
T KOG0294|consen 134 SIHPSGKLALSVGGDQVLRTWNLVRGRVAF--VLNL---KNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREI-- 205 (362)
T ss_pred EecCCCceEEEEcCCceeeeehhhcCccce--eecc---CCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhh--
Confidence 9999999 6788999999999986554221 1122 22334499999999999988765 999999865422222
Q ss_pred eecccccceEEEEee-CCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEE
Q 013717 338 ALRGHGKAILCLINV-AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIR 416 (437)
Q Consensus 338 ~~~~~~~~i~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~ 416 (437)
. ....+.|+.|. +..|++|++|+.|++||..+.. ++..+.+|...|.++.+..+... .||+|+|.||.|+
T Consensus 206 --~-~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~---~~~~~~AH~~RVK~i~~~~~~~~---~~lvTaSSDG~I~ 276 (362)
T KOG0294|consen 206 --E-NPKRILCATFLDGSELLVGGDNEWISLKDTDSDT---PLTEFLAHENRVKDIASYTNPEH---EYLVTASSDGFIK 276 (362)
T ss_pred --h-ccccceeeeecCCceEEEecCCceEEEeccCCCc---cceeeecchhheeeeEEEecCCc---eEEEEeccCceEE
Confidence 1 22556777776 4599999999999999999855 88999999999999997655332 5999999999999
Q ss_pred EEeeccCCC
Q 013717 417 AWQVSVSCP 425 (437)
Q Consensus 417 iw~~~~~~~ 425 (437)
+||++....
T Consensus 277 vWd~~~~~k 285 (362)
T KOG0294|consen 277 VWDIDMETK 285 (362)
T ss_pred EEEcccccc
Confidence 999998743
No 58
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-29 Score=205.48 Aligned_cols=284 Identities=18% Similarity=0.258 Sum_probs=219.3
Q ss_pred eec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEe--CCeEEEEec--CCeE
Q 013717 93 VQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC--DGKIFTAHQ--DCKI 164 (437)
Q Consensus 93 ~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~--dg~i 164 (437)
+.+ .....|.++.|+ |++|++++.| .+++||..++ +...++ ..+.-.|..++|. ++.++.++. |.+|
T Consensus 8 k~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g--~~~~ti---~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG--KQVKTI---NSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred cccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCC--ceeeEe---ecccccccEEEEecCCceEEEccCCCCCce
Confidence 344 457899999999 9999999999 9999999995 444444 3466688888887 444666665 8899
Q ss_pred EEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCc
Q 013717 165 RVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDL 242 (437)
Q Consensus 165 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~ 242 (437)
+.-++.+.+.++ .|.||...|++++.+| +.+++++.|++|++||++..
T Consensus 83 ryLsl~dNkylR------------------------------YF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~ 132 (311)
T KOG1446|consen 83 RYLSLHDNKYLR------------------------------YFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK 132 (311)
T ss_pred EEEEeecCceEE------------------------------EcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCC
Confidence 999999886544 3458999999999999 99999999999999999988
Q ss_pred ceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEee-CccccEEEEEEccCCCEEEEEeCCCc
Q 013717 243 RCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLE-KHKSAVNALALSDDGTVLFSGACDRS 320 (437)
Q Consensus 243 ~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~ 320 (437)
++...+.....+ ..+|.|+|. +|++...+.|++||++.-.........+. +.....+.|.|+|||++|+.++..+.
T Consensus 133 ~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~ 210 (311)
T KOG1446|consen 133 KCQGLLNLSGRP--IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASF 210 (311)
T ss_pred CCceEEecCCCc--ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCc
Confidence 888777644443 478999999 77777777999999986543332222232 45678999999999999999999999
Q ss_pred EEEEECCCCccceEEeeeecccccce-EEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecC-CCCCeeEEEEEccC
Q 013717 321 ILVWDREDSANHMVVTGALRGHGKAI-LCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEG-HTKPVKSLTAVTEE 398 (437)
Q Consensus 321 i~i~d~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~ 398 (437)
+++.|.-+|.....+.........++ .++.++++++++|+.||+|.+|+++++. .+..+.+ +.+++.++.|.|..
T Consensus 211 ~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~---~v~~~~~~~~~~~~~~~fnP~~ 287 (311)
T KOG1446|consen 211 IYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGK---KVAVLRGPNGGPVSCVRFNPRY 287 (311)
T ss_pred EEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCc---EeeEecCCCCCCccccccCCce
Confidence 99999988874444333222221222 4445667799999999999999999987 6777777 78999999999964
Q ss_pred CCCceEEEEEecCCCcEEEEeeccC
Q 013717 399 GQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 399 ~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
..-++.+..+-+|=....
T Consensus 288 -------~mf~sa~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 288 -------AMFVSASSNLVFWLPDED 305 (311)
T ss_pred -------eeeeecCceEEEEecccc
Confidence 444445668999976644
No 59
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=3.6e-30 Score=255.04 Aligned_cols=275 Identities=11% Similarity=0.161 Sum_probs=217.6
Q ss_pred cceeeccccccccccCCCceeEEecCCCc-------ceeeeecCccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCc
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHL-------CINSVQLGHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTT 128 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~-------~~~~~~~~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~ 128 (437)
.++.|.|....+++++.|+.|++|+.... ......+.+...|.+++|+ +.+|++++.| .|++||+.++
T Consensus 487 ~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~- 565 (793)
T PLN00181 487 CAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS- 565 (793)
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC-
Confidence 46789999999999999999999997431 1123334556789999997 6899999999 9999999884
Q ss_pred eeeeeccccCCCCcccEEEEEEeC-C--eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccc
Q 013717 129 WTSINTFNDNDSSSGSVKSVTFCD-G--KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKK 205 (437)
Q Consensus 129 ~~~~~~~~~~~~h~~~v~~l~~~~-~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (437)
+.+..+ .+|.+.|.+++|++ + .|++|+.||+|++||+.++.....+.
T Consensus 566 -~~~~~~---~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~-------------------------- 615 (793)
T PLN00181 566 -QLVTEM---KEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIK-------------------------- 615 (793)
T ss_pred -eEEEEe---cCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEe--------------------------
Confidence 444444 57999999999984 3 39999999999999998765433221
Q ss_pred eeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcc-eEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCC
Q 013717 206 KLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLR-CLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKP 281 (437)
Q Consensus 206 ~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~ 281 (437)
+...|.++.|.+ .++++|+.||.|++||+++.+ .+..+.+|...|.++.|.+...+++++.|+.|++||++
T Consensus 616 -----~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~ 690 (793)
T PLN00181 616 -----TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLS 690 (793)
T ss_pred -----cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCC
Confidence 335788998853 799999999999999998765 46677789999999999854459999999999999987
Q ss_pred CCc--ccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEee---------eecccccceEEEE
Q 013717 282 FNE--KRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTG---------ALRGHGKAILCLI 350 (437)
Q Consensus 282 ~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---------~~~~~~~~i~~~~ 350 (437)
... .....+..+.+|...+..++|+|++.+|++|+.|+.|++|+............ ....+...|.+++
T Consensus 691 ~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ 770 (793)
T PLN00181 691 MSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVC 770 (793)
T ss_pred CCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEE
Confidence 432 12346778889999999999999999999999999999999865432221110 1123456688888
Q ss_pred eeCC--EEEEEeCCCcEEEeeC
Q 013717 351 NVAG--LLMSGSADRTVRIWQR 370 (437)
Q Consensus 351 ~~~~--~l~~~~~dg~i~iwd~ 370 (437)
|+++ .|++|+.||.|+||++
T Consensus 771 ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 771 WRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EcCCCCeEEEecCCCcEEEEec
Confidence 8755 9999999999999986
No 60
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=9.2e-31 Score=224.22 Aligned_cols=298 Identities=18% Similarity=0.277 Sum_probs=219.1
Q ss_pred eec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCce--eeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeE
Q 013717 93 VQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTW--TSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKI 164 (437)
Q Consensus 93 ~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~--~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i 164 (437)
..+ +|+..|.++++. |-.|++|+.| +|++||+..... +..+.+.. .....|+++.|++.+ |++.+.....
T Consensus 161 i~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P--~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 161 IQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP--CETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred EeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCc--ccccccceeeecCCCCeEEEEecCcce
Confidence 344 999999999998 9999999999 999999987422 22222221 234578999999544 7777778899
Q ss_pred EEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCC
Q 013717 165 RVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASD 241 (437)
Q Consensus 165 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~ 241 (437)
+++|-+..+.....+. +.++. ......+|...++|.+|+| ..+++++.||+++|||+..
T Consensus 239 kl~DRdG~~~~e~~KG--------------DQYI~----Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~ 300 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKG--------------DQYIR----DMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNN 300 (641)
T ss_pred eEEccCCceeeeeecc--------------chhhh----hhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCC
Confidence 9999876554333221 11110 0112258999999999999 8999999999999999976
Q ss_pred cc-eEEEee-----cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccc--cEEEEEEccCCCEE
Q 013717 242 LR-CLESIK-----AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKS--AVNALALSDDGTVL 312 (437)
Q Consensus 242 ~~-~~~~~~-----~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l 312 (437)
.+ .++.++ +..-.++.++|++++. ||+|+.||.|.+|+..... ....+..-.+|.. .|++|.|++||++|
T Consensus 301 ~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~-v~p~~~vk~AH~~g~~Itsi~FS~dg~~L 379 (641)
T KOG0772|consen 301 TKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRT-VRPVMKVKDAHLPGQDITSISFSYDGNYL 379 (641)
T ss_pred chhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcc-cccceEeeeccCCCCceeEEEeccccchh
Confidence 54 333333 3345789999999999 9999999999999975322 2223333445665 89999999999999
Q ss_pred EEEeCCCcEEEEECCCCccceEEe-eeecccccceEEEEeeCCEEEEEeC------CCcEEEeeCCCCCCeeeeeeecCC
Q 013717 313 FSGACDRSILVWDREDSANHMVVT-GALRGHGKAILCLINVAGLLMSGSA------DRTVRIWQRGSDGRFGCLAVLEGH 385 (437)
Q Consensus 313 ~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~h 385 (437)
++-+.|+++++||++..+...... .........-.|++++..+|++|+. .|.+.+||..+-+ .+.++.-.
T Consensus 380 lSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d---~v~ki~i~ 456 (641)
T KOG0772|consen 380 LSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLD---TVYKIDIS 456 (641)
T ss_pred hhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEecccee---eEEEecCC
Confidence 999999999999999765443222 2222223334566666668888864 5689999988755 67777666
Q ss_pred CCCeeEEEEEccCCCCceEEEEEecCCCcEEEEe
Q 013717 386 TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ 419 (437)
Q Consensus 386 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~ 419 (437)
...|..+.|+|.-++ |+.|+.||.+++|-
T Consensus 457 ~aSvv~~~WhpkLNQ-----i~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 457 TASVVRCLWHPKLNQ-----IFAGSGDGTAHVYY 485 (641)
T ss_pred CceEEEEeecchhhh-----eeeecCCCceEEEE
Confidence 788999999998875 77788899998874
No 61
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.6e-31 Score=239.42 Aligned_cols=270 Identities=20% Similarity=0.304 Sum_probs=203.7
Q ss_pred CCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccc-----------------c--------------Ccccc
Q 013717 140 SSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTT-----------------L--------------PTVND 186 (437)
Q Consensus 140 ~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~-----------------~--------------~~~~~ 186 (437)
+|.+.|.++.|++++ ||+||.||.|+||.+...+....-.. . .....
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 799999999999766 99999999999999876221100000 0 00000
Q ss_pred ceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe
Q 013717 187 RLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT 265 (437)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 265 (437)
... ...+.....+...+.+.|.||.+.|.++.|+. ++|++++.|.+|++|++...+++..|. |.+.|+|++|+|-..
T Consensus 345 s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD 422 (712)
T ss_pred Ccc-ccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence 000 12222223344555677899999999999999 999999999999999999999999997 999999999999443
Q ss_pred --EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeec---
Q 013717 266 --VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALR--- 340 (437)
Q Consensus 266 --l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--- 340 (437)
|++|+.||.|+||++... .+..+.....-|++++|.|||++.+.|+.+|.+++|+....+......-...
T Consensus 423 ryFiSGSLD~KvRiWsI~d~-----~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDK-----KVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred CcEeecccccceEEeecCcC-----eeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 999999999999988643 2444555668899999999999999999999999999987543332221111
Q ss_pred -ccccceEEEEeeCC---EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCC--CeeEEEEEccCCCCceEEEEEecCCCc
Q 013717 341 -GHGKAILCLINVAG---LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTK--PVKSLTAVTEEGQNGVVSVFSGSLDGE 414 (437)
Q Consensus 341 -~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~l~s~~~dg~ 414 (437)
.....|+.+.+.+. .+++.+.|..|||||.+... ++..++|+.. .-....|+.++ ++|+++++|..
T Consensus 498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~---lv~KfKG~~n~~SQ~~Asfs~Dg-----k~IVs~seDs~ 569 (712)
T KOG0283|consen 498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD---LVHKFKGFRNTSSQISASFSSDG-----KHIVSASEDSW 569 (712)
T ss_pred cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchh---hhhhhcccccCCcceeeeEccCC-----CEEEEeecCce
Confidence 11237999988743 68889999999999997655 7777777543 23455678877 48999999999
Q ss_pred EEEEeeccCC
Q 013717 415 IRAWQVSVSC 424 (437)
Q Consensus 415 i~iw~~~~~~ 424 (437)
|++|+++...
T Consensus 570 VYiW~~~~~~ 579 (712)
T KOG0283|consen 570 VYIWKNDSFN 579 (712)
T ss_pred EEEEeCCCCc
Confidence 9999986543
No 62
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=3.6e-31 Score=212.99 Aligned_cols=289 Identities=18% Similarity=0.298 Sum_probs=222.9
Q ss_pred eeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCC------------c----eeeeeccccCCCCcccEEEEEE
Q 013717 91 NSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGT------------T----WTSINTFNDNDSSSGSVKSVTF 150 (437)
Q Consensus 91 ~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~------------~----~~~~~~~~~~~~h~~~v~~l~~ 150 (437)
....+ .|..++.+.+|+ |.++|+|+.| .|+|.|++.. . -..++++ ..|...|+++.|
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTl---YDH~devn~l~F 180 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTL---YDHVDEVNDLDF 180 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeeh---hhccCcccceee
Confidence 33445 999999999999 9999999999 9999999721 0 1123333 679999999999
Q ss_pred eCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEE
Q 013717 151 CDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIY 226 (437)
Q Consensus 151 ~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~ 226 (437)
.|.. |++++.|++|+++|+......+..+.+ ....+|.++.|+| .+++
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~----------------------------qd~~~vrsiSfHPsGefll 232 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVF----------------------------QDTEPVRSISFHPSGEFLL 232 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHHHHHHHHHh----------------------------hccceeeeEeecCCCceEE
Confidence 9875 999999999999999876544444433 2567899999999 8999
Q ss_pred EEECCCcEEEEECCCcceEEEee---cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEee-Cc-cccE
Q 013717 227 SVSWDKSLKIWRASDLRCLESIK---AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLE-KH-KSAV 300 (437)
Q Consensus 227 ~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~-~~~i 300 (437)
.|..-..+++||+.+.++...-. .|.+.|+++.+++.+. .++|+.||.|++||=-. .+++.++. .| ...|
T Consensus 233 vgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS----~rCv~t~~~AH~gsev 308 (430)
T KOG0640|consen 233 VGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVS----NRCVRTIGNAHGGSEV 308 (430)
T ss_pred EecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeecccc----HHHHHHHHhhcCCcee
Confidence 99999999999999988765543 6889999999999999 89999999999997433 33555543 34 4579
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeee-cccccceEEEEee--CCEEEEEeC-CCcEEEeeCCCCCCe
Q 013717 301 NALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGAL-RGHGKAILCLINV--AGLLMSGSA-DRTVRIWQRGSDGRF 376 (437)
Q Consensus 301 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~~l~~~~~-dg~i~iwd~~~~~~~ 376 (437)
.+..|..+|+++++.+.|..+++|.+.+++......+.- .+....-+...|+ .++++.-.+ .+.+.-||.++..+
T Consensus 309 cSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr- 387 (430)
T KOG0640|consen 309 CSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADR- 387 (430)
T ss_pred eeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhh-
Confidence 999999999999999999999999999987655543320 0111111222233 445555444 57899999998773
Q ss_pred eeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717 377 GCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 377 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
....-.+|.+.+..+.-+|.++ -+++|+.|-.+|+|--+
T Consensus 388 -~~l~slgHn~a~R~i~HSP~~p-----~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 388 -VALLSLGHNGAVRWIVHSPVEP-----AFMTCSDDFRARFWYRR 426 (430)
T ss_pred -hhhcccCCCCCceEEEeCCCCC-----ceeeecccceeeeeeec
Confidence 2223357999999999999987 59999999999999643
No 63
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.3e-32 Score=224.12 Aligned_cols=283 Identities=18% Similarity=0.286 Sum_probs=225.9
Q ss_pred ceeeeec-CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCe
Q 013717 89 CINSVQL-GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCK 163 (437)
Q Consensus 89 ~~~~~~~-~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~ 163 (437)
.+.+..| ||.+.|.|++-+ -..+++|+.| .|+|||+.. ..+..++ ..|.+.|..|++..+.+++++.|.+
T Consensus 56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq--R~~~~~f---~AH~G~V~Gi~v~~~~~~tvgdDKt 130 (433)
T KOG0268|consen 56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ--RECIRTF---KAHEGLVRGICVTQTSFFTVGDDKT 130 (433)
T ss_pred ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhh--hhhhhee---ecccCceeeEEecccceEEecCCcc
Confidence 3445566 999999999999 2579999999 999999988 4455555 6899999999999988999999999
Q ss_pred EEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCC
Q 013717 164 IRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASD 241 (437)
Q Consensus 164 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~ 241 (437)
|+.|.++.. ....+ .-...+..+.-+. +.++++++ .|.|||.+.
T Consensus 131 vK~wk~~~~----p~~ti----------------------------lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R 176 (433)
T KOG0268|consen 131 VKQWKIDGP----PLHTI----------------------------LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQR 176 (433)
T ss_pred eeeeeccCC----cceee----------------------------eccccccccccccccccccccCc--eeeeccccc
Confidence 999998752 11110 1233455555544 67777776 499999999
Q ss_pred cceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC
Q 013717 242 LRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR 319 (437)
Q Consensus 242 ~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 319 (437)
..++..+.-..+.|.++.|+|-.. |+++..|+.|.+||++.+....+.+..+ .-+.|+|+|.+--+++|++|.
T Consensus 177 ~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m-----RTN~IswnPeafnF~~a~ED~ 251 (433)
T KOG0268|consen 177 DNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM-----RTNTICWNPEAFNFVAANEDH 251 (433)
T ss_pred CCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeec-----cccceecCccccceeeccccc
Confidence 999999988888999999999887 7888899999999999877555554443 356799999888999999999
Q ss_pred cEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEcc
Q 013717 320 SILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTE 397 (437)
Q Consensus 320 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 397 (437)
.++.||++.... ....+.+|...|+.++|++. -+++|+.|.+|+||.++.+.......+- --..|.++.|+.|
T Consensus 252 nlY~~DmR~l~~---p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk--RMq~V~~Vk~S~D 326 (433)
T KOG0268|consen 252 NLYTYDMRNLSR---PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK--RMQHVFCVKYSMD 326 (433)
T ss_pred cceehhhhhhcc---cchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh--hhheeeEEEEecc
Confidence 999999986543 44557889999999998854 9999999999999999876632222221 2347999999998
Q ss_pred CCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 398 EGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 398 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
. +|+++||+|+.||+|.-...+.
T Consensus 327 s-----kyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 327 S-----KYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred c-----cEEEecCCCcceeeeecchhhh
Confidence 8 5999999999999999876554
No 64
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-30 Score=231.36 Aligned_cols=277 Identities=28% Similarity=0.498 Sum_probs=232.9
Q ss_pred ceeeeec-CccCCeEEEEee-CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEE-EEEeC---CeEEEEecC
Q 013717 89 CINSVQL-GHKLPIGCIAVH-HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKS-VTFCD---GKIFTAHQD 161 (437)
Q Consensus 89 ~~~~~~~-~h~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~---~~l~s~~~d 161 (437)
.++.+.+ ||...|..+++. +..++++|.| ++++|+-..+.+.....+ .+|.+-|.. +++.+ .++++|+.|
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~---~~~~g~i~~~i~y~e~~~~~l~~g~~D 80 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLETHAF---EGPKGFIANSICYAESDKGRLVVGGMD 80 (745)
T ss_pred ceeEEEeccCccchheeEecCCeEEeecCCCCceeeeeccCcccccceec---ccCcceeeccceeccccCcceEeeccc
Confidence 4556677 999999999988 7789999999 999999987655555555 567787777 88773 339999999
Q ss_pred CeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECC
Q 013717 162 CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRAS 240 (437)
Q Consensus 162 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~ 240 (437)
++|.+|...+......+ .+|...|.++.... ..+++|+.|.++++|..
T Consensus 81 ~~i~v~~~~~~~P~~~L------------------------------kgH~snVC~ls~~~~~~~iSgSWD~TakvW~~- 129 (745)
T KOG0301|consen 81 TTIIVFKLSQAEPLYTL------------------------------KGHKSNVCSLSIGEDGTLISGSWDSTAKVWRI- 129 (745)
T ss_pred ceEEEEecCCCCchhhh------------------------------hccccceeeeecCCcCceEecccccceEEecc-
Confidence 99999999877654444 48999999999776 66899999999999975
Q ss_pred CcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCc
Q 013717 241 DLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRS 320 (437)
Q Consensus 241 ~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 320 (437)
+++...+++|...|++++.-|++.+++|+.|..|++|.- .+.++++.+|...|+.+++-+++ .|++++.||.
T Consensus 130 -~~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~------~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~ 201 (745)
T KOG0301|consen 130 -GELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKG------GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGS 201 (745)
T ss_pred -hhhhcccCCcchheeeeeecCCCcEEeccCcceeeeccC------CchhhhhccchhheeeeEEecCC-CeEeecCCce
Confidence 556677999999999999999999999999999999953 25788999999999999999775 6788999999
Q ss_pred EEEEECCCCccceEEeeeecccccceEEEEe--eCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccC
Q 013717 321 ILVWDREDSANHMVVTGALRGHGKAILCLIN--VAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEE 398 (437)
Q Consensus 321 i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 398 (437)
|+.|++. ++ ....+.+|..-+.+++. ++..++++++|++++||+... +.+.+.-....|+++.+-+++
T Consensus 202 Ir~w~~~-ge----~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e-----~~q~I~lPttsiWsa~~L~Ng 271 (745)
T KOG0301|consen 202 IRLWDLD-GE----VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDE-----CVQVITLPTTSIWSAKVLLNG 271 (745)
T ss_pred EEEEecc-Cc----eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCc-----eEEEEecCccceEEEEEeeCC
Confidence 9999994 44 44557889999988883 344999999999999999883 777777556689999999888
Q ss_pred CCCceEEEEEecCCCcEEEEeeccC
Q 013717 399 GQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 399 ~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
+ +++|+.||.||||..+..
T Consensus 272 D------Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 272 D------IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred C------EEEeccCceEEEEEeccc
Confidence 4 999999999999988744
No 65
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-30 Score=229.13 Aligned_cols=271 Identities=23% Similarity=0.352 Sum_probs=226.2
Q ss_pred EEee-CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccc
Q 013717 104 IAVH-HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTT 180 (437)
Q Consensus 104 l~~~-~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~ 180 (437)
+.|+ .+.||.|....|.+|+..++....+..+ +...|+++.|++++ |+.|..+|.|.|||..+.+....+.
T Consensus 183 ldWss~n~laValg~~vylW~~~s~~v~~l~~~-----~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~- 256 (484)
T KOG0305|consen 183 LDWSSANVLAVALGQSVYLWSASSGSVTELCSF-----GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR- 256 (484)
T ss_pred hhcccCCeEEEEecceEEEEecCCCceEEeEec-----CCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc-
Confidence 3445 6788888887999999999876666554 48999999999655 9999999999999998776555443
Q ss_pred cCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEE-eecccccEEEEE
Q 013717 181 LPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLES-IKAHEDAVNAVA 259 (437)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~v~~~~ 259 (437)
..|...|-+++|+...+.+|+.|+.|.++|++..+.... +.+|...|..++
T Consensus 257 ----------------------------~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLk 308 (484)
T KOG0305|consen 257 ----------------------------GSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLK 308 (484)
T ss_pred ----------------------------CCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeE
Confidence 128999999999999999999999999999998876655 778999999999
Q ss_pred EecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEcc-CCCEEEEEe--CCCcEEEEECCCCccceEE
Q 013717 260 VSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSD-DGTVLFSGA--CDRSILVWDREDSANHMVV 335 (437)
Q Consensus 260 ~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~--~dg~i~i~d~~~~~~~~~~ 335 (437)
|++|+. +|+|+.|+.+.|||.... .+...+..|.+.|.+++|+| ...+||+|+ .|+.|++||..++.....+
T Consensus 309 ws~d~~~lASGgnDN~~~Iwd~~~~----~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~v 384 (484)
T KOG0305|consen 309 WSPDGNQLASGGNDNVVFIWDGLSP----EPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSV 384 (484)
T ss_pred ECCCCCeeccCCCccceEeccCCCc----cccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccc
Confidence 999999 999999999999987432 46777888999999999999 556888864 5999999999987643322
Q ss_pred eeeecccccceEEEEeeCCE--EEE--EeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecC
Q 013717 336 TGALRGHGKAILCLINVAGL--LMS--GSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSL 411 (437)
Q Consensus 336 ~~~~~~~~~~i~~~~~~~~~--l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~ 411 (437)
.....|..+.|...+ |++ |..++.|.||+..+.+ .+..+.+|...|..++++|++. .+++|+.
T Consensus 385 -----dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~---~~~~l~gH~~RVl~la~SPdg~-----~i~t~a~ 451 (484)
T KOG0305|consen 385 -----DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK---LVAELLGHTSRVLYLALSPDGE-----TIVTGAA 451 (484)
T ss_pred -----ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc---eeeeecCCcceeEEEEECCCCC-----EEEEecc
Confidence 246778999998762 443 4457899999999855 8899999999999999999985 7999999
Q ss_pred CCcEEEEeeccCCC
Q 013717 412 DGEIRAWQVSVSCP 425 (437)
Q Consensus 412 dg~i~iw~~~~~~~ 425 (437)
|.++++|++-...+
T Consensus 452 DETlrfw~~f~~~~ 465 (484)
T KOG0305|consen 452 DETLRFWNLFDERP 465 (484)
T ss_pred cCcEEeccccCCCC
Confidence 99999999987533
No 66
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.1e-32 Score=219.80 Aligned_cols=282 Identities=20% Similarity=0.294 Sum_probs=232.0
Q ss_pred CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccC---CCCcccEEEEEEeCCe--EEEEecCCeEEEE
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDN---DSSSGSVKSVTFCDGK--IFTAHQDCKIRVW 167 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~---~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw 167 (437)
|...-+-|..|+ |+||++|+.| .|.+||..+|+.+.-..+... .-+..+|.|+.|+.+. +++|+.||.|++|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 778889999999 9999999999 999999999755444333221 3378899999999665 9999999999999
Q ss_pred eCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceE
Q 013717 168 QLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCL 245 (437)
Q Consensus 168 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~ 245 (437)
.+.++++++.+. ..|...|+|+.|+. ..+++++.|.++++.-+..|+++
T Consensus 291 ri~tG~ClRrFd-----------------------------rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~L 341 (508)
T KOG0275|consen 291 RIETGQCLRRFD-----------------------------RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCL 341 (508)
T ss_pred EEecchHHHHhh-----------------------------hhhccCeeEEEEccCcchhhcccccceEEEeccccchhH
Confidence 999998877665 35999999999987 89999999999999999999999
Q ss_pred EEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeC--ccccEEEEEEccC-CCEEEEEeCCCcE
Q 013717 246 ESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEK--HKSAVNALALSDD-GTVLFSGACDRSI 321 (437)
Q Consensus 246 ~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~-~~~l~~~~~dg~i 321 (437)
..+++|...|+...|.++|. +++++.||+|++|+..+. +++.+++. ...+|+++-..|. -..++++...++|
T Consensus 342 KEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktt----eC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv 417 (508)
T KOG0275|consen 342 KEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTT----ECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTV 417 (508)
T ss_pred HHhcCccccccceEEcCCCCeEEEecCCccEEEecCcch----hhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeE
Confidence 99999999999999999999 999999999999976544 35555553 4567888888884 4588889999999
Q ss_pred EEEECCCCccceEEeeeecccccce-EEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCC
Q 013717 322 LVWDREDSANHMVVTGALRGHGKAI-LCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQ 400 (437)
Q Consensus 322 ~i~d~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 400 (437)
+|.++... ....+...-+....-| .++++.|+++.+.++|+.++.|.+.+++ +-.++.-|...|..++-+|..+
T Consensus 418 ~imn~qGQ-vVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~---LE~tl~VhEkdvIGl~HHPHqN- 492 (508)
T KOG0275|consen 418 YIMNMQGQ-VVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK---LERTLPVHEKDVIGLTHHPHQN- 492 (508)
T ss_pred EEEeccce-EEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCc---eeeeeecccccccccccCcccc-
Confidence 99998642 1111111111112223 4456667899999999999999999988 7788888999999999999875
Q ss_pred CceEEEEEecCCCcEEEEe
Q 013717 401 NGVVSVFSGSLDGEIRAWQ 419 (437)
Q Consensus 401 ~~~~~l~s~~~dg~i~iw~ 419 (437)
+|++-+.||.+++|.
T Consensus 493 ----llAsYsEDgllKLWk 507 (508)
T KOG0275|consen 493 ----LLASYSEDGLLKLWK 507 (508)
T ss_pred ----hhhhhcccchhhhcC
Confidence 799999999999995
No 67
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.3e-31 Score=205.77 Aligned_cols=270 Identities=20% Similarity=0.263 Sum_probs=215.0
Q ss_pred ceeeccccc---ccccc-----CCCceeEEecCC-C-cceeeeecCccCCeEEEEee---CCEEEEEecC-eEEEEeCCC
Q 013717 61 SLQTLPSVP---SLQKL-----SPDETINFSSAS-H-LCINSVQLGHKLPIGCIAVH---HNFLYAASSH-EINVYDRTG 126 (437)
Q Consensus 61 ~~~~~~~~~---~~~s~-----s~dg~i~~~~~~-~-~~~~~~~~~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~ 126 (437)
+++|+|-.+ ++++. ..+|.+.+.+.+ . .-...+.+.-.+.+..++|+ .+.+++++.| .+++||...
T Consensus 13 svqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~ 92 (311)
T KOG0277|consen 13 SVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM 92 (311)
T ss_pred eeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCC
Confidence 566666443 23332 468899999985 2 23334444778999999999 7888888888 999999554
Q ss_pred CceeeeeccccCCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeec
Q 013717 127 TTWTSINTFNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRH 203 (437)
Q Consensus 127 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (437)
. ...+..+ +.|...|.++.|+... +++++.|++|++|+....+.+.
T Consensus 93 ~-s~Pi~~~---kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~--------------------------- 141 (311)
T KOG0277|consen 93 P-SKPIHKF---KEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ--------------------------- 141 (311)
T ss_pred C-CcchhHH---HhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceE---------------------------
Confidence 2 2344444 7899999999999432 8889999999999988665333
Q ss_pred cceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEe
Q 013717 204 KKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVW 278 (437)
Q Consensus 204 ~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iw 278 (437)
.+.+|...|...+|+| +.+++++.|+++++||++..-....+..|...|.++.|+..+. +++|+.|+.|+.|
T Consensus 142 ---Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~w 218 (311)
T KOG0277|consen 142 ---TFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGW 218 (311)
T ss_pred ---eecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEE
Confidence 3458999999999998 9999999999999999986544455888999999999998665 9999999999999
Q ss_pred cCCCCcccceeeEEeeCccccEEEEEEccC-CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee---CC
Q 013717 279 AKPFNEKRHALIATLEKHKSAVNALALSDD-GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV---AG 354 (437)
Q Consensus 279 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~ 354 (437)
|++.-. .++..+.+|.-.|+.+.|+|. ...|++++.|-+++|||...+.. .+.....|..-+..+.|+ +.
T Consensus 219 Dir~~r---~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds---~~e~~~~HtEFv~g~Dws~~~~~ 292 (311)
T KOG0277|consen 219 DIRNLR---TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDS---AIETVDHHTEFVCGLDWSLFDPG 292 (311)
T ss_pred ehhhcc---ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchh---hhhhhhccceEEeccccccccCc
Confidence 998544 467788999999999999995 45899999999999999975433 333455688888888776 55
Q ss_pred EEEEEeCCCcEEEeeC
Q 013717 355 LLMSGSADRTVRIWQR 370 (437)
Q Consensus 355 ~l~~~~~dg~i~iwd~ 370 (437)
++|+.+.|+.++||+-
T Consensus 293 ~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 293 QVASTGWDELLYVWNP 308 (311)
T ss_pred eeeecccccceeeecc
Confidence 9999999999999983
No 68
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.98 E-value=1.8e-29 Score=221.96 Aligned_cols=268 Identities=29% Similarity=0.431 Sum_probs=219.9
Q ss_pred ccceeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeecc
Q 013717 59 NLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTF 135 (437)
Q Consensus 59 ~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~ 135 (437)
..++.+.|....+++++.||.+.+|+...........+|...+.++.|. +++|++++.+ .|++||+..+ +....+
T Consensus 12 i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~--~~~~~~ 89 (289)
T cd00200 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG--ECVRTL 89 (289)
T ss_pred EEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc--cceEEE
Confidence 3467888888899999999999999997655333333999999999998 6699999988 9999999884 233333
Q ss_pred ccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCC
Q 013717 136 NDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGD 213 (437)
Q Consensus 136 ~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (437)
..|...|.++.|+++. +++++.||.|++||+.+++....+ ..|..
T Consensus 90 ---~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~------------------------------~~~~~ 136 (289)
T cd00200 90 ---TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTL------------------------------RGHTD 136 (289)
T ss_pred ---eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEe------------------------------ccCCC
Confidence 4688899999999754 666666999999999865533322 24888
Q ss_pred cEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceee
Q 013717 214 AVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALI 290 (437)
Q Consensus 214 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~ 290 (437)
.+.++.+++ .++++++.||.|++||+++++.+..+..+...+.++.|+|++. +++++.+|.|++||++.. ..+
T Consensus 137 ~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~----~~~ 212 (289)
T cd00200 137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG----KCL 212 (289)
T ss_pred cEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC----cee
Confidence 999999999 6666666699999999999998888888888999999999996 889999999999998653 355
Q ss_pred EEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC--CEEEEEeCCCcEEEe
Q 013717 291 ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA--GLLMSGSADRTVRIW 368 (437)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~i~iw 368 (437)
..+..|...+.++.|+|++.++++++.||.|++||+.+++ ....+..|...+.++.+++ .+|++++.||.|++|
T Consensus 213 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw 288 (289)
T cd00200 213 GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGE----CVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288 (289)
T ss_pred cchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCce----eEEEccccCCcEEEEEECCCCCEEEEecCCCeEEec
Confidence 6666788899999999998899988889999999998754 3334457888898988886 599999999999999
Q ss_pred e
Q 013717 369 Q 369 (437)
Q Consensus 369 d 369 (437)
+
T Consensus 289 ~ 289 (289)
T cd00200 289 D 289 (289)
T ss_pred C
Confidence 6
No 69
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.1e-30 Score=217.84 Aligned_cols=272 Identities=21% Similarity=0.307 Sum_probs=220.9
Q ss_pred cccceeeccccccccccCCCceeEEecCC--Ccceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceee
Q 013717 58 SNLSLQTLPSVPSLQKLSPDETINFSSAS--HLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTS 131 (437)
Q Consensus 58 ~~~~~~~~~~~~~~~s~s~dg~i~~~~~~--~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~ 131 (437)
...-++|+++...+++++.|.+..+|... ...++..++ ||..+|.-+.|+ .++|++++.+ .+.+||+.+|....
T Consensus 226 EVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~ 305 (519)
T KOG0293|consen 226 EVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRH 305 (519)
T ss_pred cEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhh
Confidence 44578999999999999999999999983 345667777 999999999999 8999999999 99999999975443
Q ss_pred eeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeee
Q 013717 132 INTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWI 209 (437)
Q Consensus 132 ~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (437)
... .+|...+.+++|.||+ +++|+.|++|..||++...... -..
T Consensus 306 ~y~----~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~-W~g----------------------------- 351 (519)
T KOG0293|consen 306 LYP----SGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGN-WEG----------------------------- 351 (519)
T ss_pred hcc----cCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhc-ccc-----------------------------
Confidence 333 3467899999999887 9999999999999998653211 110
Q ss_pred cCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCccc
Q 013717 210 EHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKR 286 (437)
Q Consensus 210 ~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~ 286 (437)
-....|.+++..+ +++++.+.|..|++++.++......+. ...+|+++.++.+++ +++.-.+..+++||+..+
T Consensus 352 vr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~--- 427 (519)
T KOG0293|consen 352 VRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN--- 427 (519)
T ss_pred cccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh---
Confidence 1234688888876 899999999999999998766554443 567899999999999 677778999999998743
Q ss_pred ceeeEEeeCcccc--EEEEEEcc-CCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEEe
Q 013717 287 HALIATLEKHKSA--VNALALSD-DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGS 360 (437)
Q Consensus 287 ~~~~~~~~~~~~~--i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~ 360 (437)
..++.+.+|... +..-+|.- +..++++|++|+.|+||+..+++ +...+.||...|.|++|+|. .+|+++
T Consensus 428 -~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk----ll~~LsGHs~~vNcVswNP~~p~m~ASas 502 (519)
T KOG0293|consen 428 -KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK----LLAVLSGHSKTVNCVSWNPADPEMFASAS 502 (519)
T ss_pred -hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCc----eeEeecCCcceeeEEecCCCCHHHhhccC
Confidence 466667777654 33344543 55799999999999999998887 66678999999999999976 999999
Q ss_pred CCCcEEEeeCCC
Q 013717 361 ADRTVRIWQRGS 372 (437)
Q Consensus 361 ~dg~i~iwd~~~ 372 (437)
.||+||||....
T Consensus 503 DDgtIRIWg~~~ 514 (519)
T KOG0293|consen 503 DDGTIRIWGPSD 514 (519)
T ss_pred CCCeEEEecCCc
Confidence 999999998764
No 70
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=4.1e-30 Score=228.51 Aligned_cols=323 Identities=18% Similarity=0.235 Sum_probs=251.2
Q ss_pred cceeeccccccccccCCCceeEEecCCCc---ceeeeecCccCCeEEEEee-------------CCEEEEEecC-eEEEE
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHL---CINSVQLGHKLPIGCIAVH-------------HNFLYAASSH-EINVY 122 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~---~~~~~~~~h~~~V~~l~~~-------------~~~l~s~~~d-~v~vw 122 (437)
-.++|.+....+.-+-.|+.+++||+... .++...+.|...|..+.-- ...+++++.| +||+|
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW 407 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLW 407 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEe
Confidence 45789999999999999999999999543 4444445999999887642 3568899999 99999
Q ss_pred eCCCCceeeeeccc--------------------------------cCCCCcccEEEEEEeCCe--EEEEecCCeEEEEe
Q 013717 123 DRTGTTWTSINTFN--------------------------------DNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQ 168 (437)
Q Consensus 123 d~~~~~~~~~~~~~--------------------------------~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd 168 (437)
|+.......+..-. ...+....+.+++.+|++ |++|..-|++++|+
T Consensus 408 ~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~ 487 (1080)
T KOG1408|consen 408 DLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYD 487 (1080)
T ss_pred ecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEE
Confidence 99863111110000 002234579999999876 99999999999999
Q ss_pred CCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-----CeEEEEECCCcEEEEECCC-c
Q 013717 169 LTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-----GLIYSVSWDKSLKIWRASD-L 242 (437)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~~~~~dg~i~iwd~~~-~ 242 (437)
+..-+....+ ..|+.+|.|+.++. ++|++++.|..|+|||+.. .
T Consensus 488 Lq~l~~~~~~------------------------------eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny 537 (1080)
T KOG1408|consen 488 LQELEYTCFM------------------------------EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY 537 (1080)
T ss_pred ehhhhhhhhe------------------------------ecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence 9876544333 35999999999976 8999999999999999864 4
Q ss_pred ceEEEeecccccEEEEEEecCC--e-EEEEeCCCeEEEecCCCCcccceee--EEeeCccccEEEEEEccCCCEEEEEeC
Q 013717 243 RCLESIKAHEDAVNAVAVSAGG--T-VYTGSADRKIRVWAKPFNEKRHALI--ATLEKHKSAVNALALSDDGTVLFSGAC 317 (437)
Q Consensus 243 ~~~~~~~~~~~~v~~~~~~~~~--~-l~~~~~dg~v~iwd~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~ 317 (437)
.+++++.+|...|+++.|--.| . +++++.|..|.+ +........... ..-......++.|+..|..+++++++.
T Consensus 538 ~l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ 616 (1080)
T KOG1408|consen 538 DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ 616 (1080)
T ss_pred chhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEeeeCCCcceEEEEec
Confidence 5678888999999999998766 3 899999987754 332111111111 111123467899999999999999999
Q ss_pred CCcEEEEECCCCccceEEeeeecccccceEEEE--eeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEE
Q 013717 318 DRSILVWDREDSANHMVVTGALRGHGKAILCLI--NVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAV 395 (437)
Q Consensus 318 dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~ 395 (437)
|..|+|||+.+++....+.+. .+|.+....+. +++.||++...|.++.++|..+++ ++.++.||...|+.+.|.
T Consensus 617 Drnirif~i~sgKq~k~FKgs-~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgE---cvA~m~GHsE~VTG~kF~ 692 (1080)
T KOG1408|consen 617 DRNIRIFDIESGKQVKSFKGS-RDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGE---CVAQMTGHSEAVTGVKFL 692 (1080)
T ss_pred ccceEEEeccccceeeeeccc-ccCCCceEEEEECCCccEEEEeecCCceEEEEeccch---hhhhhcCcchheeeeeec
Confidence 999999999999877666554 45656555554 556699999999999999999988 999999999999999999
Q ss_pred ccCCCCceEEEEEecCCCcEEEEeecc
Q 013717 396 TEEGQNGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 396 ~~~~~~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
+|-. .|++.+.||.|.||.+..
T Consensus 693 nDCk-----HlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 693 NDCK-----HLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ccch-----hheeecCCceEEEEECch
Confidence 9985 599999999999999765
No 71
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.98 E-value=6.4e-30 Score=200.93 Aligned_cols=274 Identities=14% Similarity=0.179 Sum_probs=219.3
Q ss_pred CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC---CeEEEEecCCeEEEEeC
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD---GKIFTAHQDCKIRVWQL 169 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~~~dg~i~iwd~ 169 (437)
+|...|.+++|+ |..|++|+.| ++.+|+++..+. ... ....+|.+.|..++|.+ +.+++++.|.+|++||+
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~--~~~-~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~ 94 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF--RKE-LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDI 94 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchhh--hhh-hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEe
Confidence 999999999999 9999999999 999999998522 222 23368999999999984 45999999999999999
Q ss_pred CCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEE
Q 013717 170 TPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLES 247 (437)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~ 247 (437)
+.++...... ....=.-+.|+| .+++.++.|..|.+.|.++.+....
T Consensus 95 r~~k~~~~i~-------------------------------~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~ 143 (313)
T KOG1407|consen 95 RSGKCTARIE-------------------------------TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNE 143 (313)
T ss_pred ccCcEEEEee-------------------------------ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeeh
Confidence 9987655443 222223456777 9999999999999999999887776
Q ss_pred eecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEEC
Q 013717 248 IKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDR 326 (437)
Q Consensus 248 ~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (437)
.+ ....+..+.|+.++. ++.....|.|.|... ...+++..+++|.....||.|+|+|++||+|+.|..+.+||+
T Consensus 144 ~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsy----psLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~ 218 (313)
T KOG1407|consen 144 EQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSY----PSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDV 218 (313)
T ss_pred hc-ccceeeeeeecCCCCEEEEecCCceEEEEec----cccccccccccCCcceEEEEECCCCceEeeccccceeeccCh
Confidence 65 556788899987776 555556699999854 355688899999999999999999999999999999999999
Q ss_pred CCCccceEEeeeecccccceEEEEee--CCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceE
Q 013717 327 EDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVV 404 (437)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~ 404 (437)
...- ....+..+.-+|..++|+ +++||+|++|..|-|=+++++. .+..++ +.++...++|+|...
T Consensus 219 ~ELi----C~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd---~~~eI~-~~~~t~tVAWHPk~~----- 285 (313)
T KOG1407|consen 219 DELI----CERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGD---RVWEIP-CEGPTFTVAWHPKRP----- 285 (313)
T ss_pred hHhh----hheeeccccCceEEEEeccCcceeeccCccceEEeEecccCC---eEEEee-ccCCceeEEecCCCc-----
Confidence 6543 444455677778666665 6699999999999999999988 455554 788999999999885
Q ss_pred EEEEecCC---------CcEEEEeec
Q 013717 405 SVFSGSLD---------GEIRAWQVS 421 (437)
Q Consensus 405 ~l~s~~~d---------g~i~iw~~~ 421 (437)
+|+-+++| |.|+++-+.
T Consensus 286 LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 286 LLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred eeeEEecCCCCccccccceeEEecCC
Confidence 56655543 567776554
No 72
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.98 E-value=1.1e-29 Score=213.28 Aligned_cols=274 Identities=20% Similarity=0.279 Sum_probs=227.2
Q ss_pred CCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCc
Q 013717 99 LPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTK 173 (437)
Q Consensus 99 ~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~ 173 (437)
..|.++... .+.+.+|+.| .+.++|...+ +.+..+ .||...|+.+.++++. +++++.|..|++|......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~--q~l~~~---~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSN--QILATL---KGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchh--hhhhhc---cCcceEEEEEEeccchhheeecCCcceEEeecccccc
Confidence 567888877 4899999999 9999999883 455555 7999999999999876 9999999999999987665
Q ss_pred ccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeec-
Q 013717 174 HHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKA- 250 (437)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~- 250 (437)
..... ..|..+|+.+..++ .||++++.||+..+.|++++..+.....
T Consensus 295 ~~~~~------------------------------~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~ 344 (506)
T KOG0289|consen 295 EPTSS------------------------------RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE 344 (506)
T ss_pred Ccccc------------------------------ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec
Confidence 33332 35999999999998 9999999999999999999998877653
Q ss_pred -ccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 013717 251 -HEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRED 328 (437)
Q Consensus 251 -~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (437)
..-.+++.+|+|||. |.+|..||.|++||+.... ....|.+|.++|..++|+.+|.+|++++.|+.|++||++.
T Consensus 345 ~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~----~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRK 420 (506)
T KOG0289|consen 345 TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT----NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRK 420 (506)
T ss_pred cccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc----ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehh
Confidence 234599999999999 9999999999999987543 6778899999999999999999999999999999999997
Q ss_pred CccceEEeeeecccccceEEEEe--eCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEE
Q 013717 329 SANHMVVTGALRGHGKAILCLIN--VAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSV 406 (437)
Q Consensus 329 ~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l 406 (437)
.+....+.. .....+.++.+ +|.+|+.++.|=+|++++-.+. .|.++..+..|.+..+++.|.... +++
T Consensus 421 l~n~kt~~l---~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k-~W~~~~~~~~~sg~st~v~Fg~~a-----q~l 491 (506)
T KOG0289|consen 421 LKNFKTIQL---DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTK-SWTEIKELADHSGLSTGVRFGEHA-----QYL 491 (506)
T ss_pred hcccceeec---cccccceeEEEcCCCCeEEeecceeEEEEEecccc-cceeeehhhhcccccceeeecccc-----eEE
Confidence 664333321 12224555555 4679999988877777775543 478899999999999999998776 599
Q ss_pred EEecCCCcEEEEee
Q 013717 407 FSGSLDGEIRAWQV 420 (437)
Q Consensus 407 ~s~~~dg~i~iw~~ 420 (437)
+++|.|..++++.+
T Consensus 492 ~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 492 ASTSMDAILRLYAL 505 (506)
T ss_pred eeccchhheEEeec
Confidence 99999999998865
No 73
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=2.2e-30 Score=209.23 Aligned_cols=320 Identities=17% Similarity=0.272 Sum_probs=239.2
Q ss_pred ceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCC
Q 013717 89 CINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDC 162 (437)
Q Consensus 89 ~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg 162 (437)
..+++.+ ||.+.|..++.. ...+.+++.| +.+||.++++ .++.++ .+|.+.|++|.|++.+ +++++.|+
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg--~CL~~Y---~GH~GSVNsikfh~s~~L~lTaSGD~ 212 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESG--ACLATY---TGHTGSVNSIKFHNSGLLLLTASGDE 212 (481)
T ss_pred EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccc--cceeee---cccccceeeEEeccccceEEEccCCc
Confidence 5566677 999999999988 6788999999 9999999995 555555 6899999999999766 88999999
Q ss_pred eEEEEeCCCCcccccccc---cCcc-----ccceeeecCCCCee--EEeeccceeeecCCCcEEEEEeCC--CeEEEEEC
Q 013717 163 KIRVWQLTPTKHHKLKTT---LPTV-----NDRLLRFMLPNSYV--TVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSW 230 (437)
Q Consensus 163 ~i~iwd~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~ 230 (437)
+-.||...-.-....... .... .+.-......+... -...-+...+.+|...|.+..|-. +.+++++.
T Consensus 213 taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSW 292 (481)
T KOG0300|consen 213 TAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASW 292 (481)
T ss_pred chHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeec
Confidence 999997321110000000 0000 00000000000000 011122345678999999998865 89999999
Q ss_pred CCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCC
Q 013717 231 DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDG 309 (437)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 309 (437)
|.+..+||+++++.+..+.+|....+.+.-+|..+ +++.+.|-+.++||++.. ...+..|++|...|+++.|..+.
T Consensus 293 DRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea---I~sV~VFQGHtdtVTS~vF~~dd 369 (481)
T KOG0300|consen 293 DRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA---IQSVAVFQGHTDTVTSVVFNTDD 369 (481)
T ss_pred cccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh---cceeeeecccccceeEEEEecCC
Confidence 99999999999999999999999999999999998 889999999999998733 35677899999999999998754
Q ss_pred CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeCCCcEEEeeCCCCCCee-eeeeecCCC
Q 013717 310 TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVRIWQRGSDGRFG-CLAVLEGHT 386 (437)
Q Consensus 310 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~h~ 386 (437)
.+++|+.|.+|+|||+++.+....-+. ...++..++.+ ...|+.-..+..|++||+....... +...-++|.
T Consensus 370 -~vVSgSDDrTvKvWdLrNMRsplATIR----tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHr 444 (481)
T KOG0300|consen 370 -RVVSGSDDRTVKVWDLRNMRSPLATIR----TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHR 444 (481)
T ss_pred -ceeecCCCceEEEeeeccccCcceeee----cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccc
Confidence 688999999999999997665443332 23445555544 4488888888999999998644211 222456899
Q ss_pred CCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 387 KPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 387 ~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
..|.|++|..+.+- .-|+++|.|..+.-|++..+.
T Consensus 445 RMV~c~AW~eehp~---cnLftcGFDR~v~gW~in~p~ 479 (481)
T KOG0300|consen 445 RMVTCCAWLEEHPA---CNLFTCGFDRMVAGWKINTPT 479 (481)
T ss_pred eeeeeeeccccCcc---cccccccccceeeeeEecccC
Confidence 99999999876532 249999999999999998764
No 74
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=4.2e-31 Score=220.31 Aligned_cols=281 Identities=21% Similarity=0.302 Sum_probs=224.8
Q ss_pred eeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeE
Q 013717 91 NSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKI 164 (437)
Q Consensus 91 ~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i 164 (437)
....+ .|.+.|..+.|- ...|++|+.| .|++|+...++.....++ .+..++|+.+.|.+++ +++++.|+.+
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tL---aGs~g~it~~d~d~~~~~~iAas~d~~~ 243 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTL---AGSLGNITSIDFDSDNKHVIAASNDKNL 243 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhh---hccCCCcceeeecCCCceEEeecCCCce
Confidence 33445 899999999998 4899999999 999999998765566666 6778899999998544 9999999999
Q ss_pred EEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCc
Q 013717 165 RVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDL 242 (437)
Q Consensus 165 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~ 242 (437)
++|+++..+....+. +|.+.|+++.|.. ..+++|+.|.+|++||+...
T Consensus 244 r~Wnvd~~r~~~TLs------------------------------GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~ 293 (459)
T KOG0288|consen 244 RLWNVDSLRLRHTLS------------------------------GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA 293 (459)
T ss_pred eeeeccchhhhhhhc------------------------------ccccceeeehhhccccceeeccccchhhhhhhhhh
Confidence 999999887555443 7999999999977 44999999999999999998
Q ss_pred ceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEE
Q 013717 243 RCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSIL 322 (437)
Q Consensus 243 ~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 322 (437)
.+..++- ....+..|..+ ...+++|..|++|++||++... ....... .+.|+++..+++|..|.+++.|.++.
T Consensus 294 ~C~kt~l-~~S~cnDI~~~-~~~~~SgH~DkkvRfwD~Rs~~----~~~sv~~-gg~vtSl~ls~~g~~lLsssRDdtl~ 366 (459)
T KOG0288|consen 294 YCSKTVL-PGSQCNDIVCS-ISDVISGHFDKKVRFWDIRSAD----KTRSVPL-GGRVTSLDLSMDGLELLSSSRDDTLK 366 (459)
T ss_pred heecccc-ccccccceEec-ceeeeecccccceEEEeccCCc----eeeEeec-CcceeeEeeccCCeEEeeecCCCcee
Confidence 8887765 34456667665 2338999999999999987654 4445544 45999999999999999999999999
Q ss_pred EEECCCCccceEEee--eecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCC--CeeEEEEEccC
Q 013717 323 VWDREDSANHMVVTG--ALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTK--PVKSLTAVTEE 398 (437)
Q Consensus 323 i~d~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~ 398 (437)
+.|+++.+....+.. ...++...-.++++++.|+++|+.||.|+||++.+++ +...+..... .|++++|+|.+
T Consensus 367 viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgK---lE~~l~~s~s~~aI~s~~W~~sG 443 (459)
T KOG0288|consen 367 VIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGK---LEKVLSLSTSNAAITSLSWNPSG 443 (459)
T ss_pred eeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCce---EEEEeccCCCCcceEEEEEcCCC
Confidence 999988653333221 1223443345556666699999999999999999987 5555554433 59999999988
Q ss_pred CCCceEEEEEecCCCcEEEEe
Q 013717 399 GQNGVVSVFSGSLDGEIRAWQ 419 (437)
Q Consensus 399 ~~~~~~~l~s~~~dg~i~iw~ 419 (437)
. .|++++.++.+.+|.
T Consensus 444 ~-----~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 444 S-----GLLSADKQKAVTLWT 459 (459)
T ss_pred c-----hhhcccCCcceEecC
Confidence 5 699999999999994
No 75
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.97 E-value=1.5e-27 Score=204.12 Aligned_cols=339 Identities=18% Similarity=0.243 Sum_probs=252.2
Q ss_pred cceeeccccccccccCCCceeEEecCCCcce--eeeec-C-ccCCeEEEEee-CCEEEEEecC-eEEEEeCCCCceeeee
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLCI--NSVQL-G-HKLPIGCIAVH-HNFLYAASSH-EINVYDRTGTTWTSIN 133 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~--~~~~~-~-h~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~~~~~~~~ 133 (437)
+...|+|..+.+.-....|.+.+|....... ..-.+ + ...-|.|++|. +.-+++|..+ .|.||+..+ .+..+
T Consensus 204 ~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTgDS~G~i~Iw~~~~--~~~~k 281 (626)
T KOG2106|consen 204 FLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITGDSGGNILIWSKGT--NRISK 281 (626)
T ss_pred EEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEeecCCceEEEEeCCC--ceEEe
Confidence 5679999999999999999999999865443 33344 3 34789999999 7888899999 999999977 34444
Q ss_pred ccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeec---------
Q 013717 134 TFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRH--------- 203 (437)
Q Consensus 134 ~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 203 (437)
.. ..|.+.|.+++...++ |++|+.|..|..||-+ -+.. ....+|.....+..+......+.+...
T Consensus 282 ~~---~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~-y~k~-r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~ 356 (626)
T KOG2106|consen 282 QV---HAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDN-YRKL-RETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTL 356 (626)
T ss_pred Ee---eecCCceEEEEEecCccEeecCccceEEecccc-cccc-ccccCchhcCCeeEEecCCCcEEEeeccceEEEeee
Confidence 43 3699999999999665 9999999999999922 2222 222333333333333333333333222
Q ss_pred ---cceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEe
Q 013717 204 ---KKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVW 278 (437)
Q Consensus 204 ---~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iw 278 (437)
...+..+|......++.+| +++++++.|+.+++|+ ..+++.+.. ...++.|+.|+|.|.++.|+..|...+.
T Consensus 357 ~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg~va~Gt~~G~w~V~ 433 (626)
T KOG2106|consen 357 ENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHPSGVVAVGTATGRWFVL 433 (626)
T ss_pred cCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccCcceEEEeeccceEEEE
Confidence 2234578999999999999 9999999999999999 555555543 5678999999999999999999999999
Q ss_pred cCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EE
Q 013717 279 AKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LL 356 (437)
Q Consensus 279 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l 356 (437)
|.++. ..+..-. ...++++++|+|+|.+||.|+.|+.|+||-+..............+ ..|+.+.|+.+ +|
T Consensus 434 d~e~~----~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g--s~ithLDwS~Ds~~~ 506 (626)
T KOG2106|consen 434 DTETQ----DLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG--SPITHLDWSSDSQFL 506 (626)
T ss_pred ecccc----eeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC--ceeEEeeecCCCceE
Confidence 87652 2343333 3889999999999999999999999999999887766666555544 66666666543 66
Q ss_pred EEEeCCCcEEEee------------------------------------------------------------CCCCCCe
Q 013717 357 MSGSADRTVRIWQ------------------------------------------------------------RGSDGRF 376 (437)
Q Consensus 357 ~~~~~dg~i~iwd------------------------------------------------------------~~~~~~~ 376 (437)
.+-+.|-.|..|. ..-.+..
T Consensus 507 ~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~r 586 (626)
T KOG2106|consen 507 VSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPR 586 (626)
T ss_pred EeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCc
Confidence 6666666666663 2222222
Q ss_pred eeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEee
Q 013717 377 GCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420 (437)
Q Consensus 377 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 420 (437)
.....+.+|.+.|++++|.-... .+++.+.|..|..|++
T Consensus 587 A~~he~~ghs~~vt~V~Fl~~d~-----~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 587 APSHEYGGHSSHVTNVAFLCKDS-----HLISTGKDTSIMQWRL 625 (626)
T ss_pred ccceeeccccceeEEEEEeeCCc-----eEEecCCCceEEEEEe
Confidence 34456778999999999998775 5777779999999987
No 76
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=5.6e-28 Score=186.25 Aligned_cols=299 Identities=19% Similarity=0.226 Sum_probs=230.6
Q ss_pred ceeeeecCccCCeEEEEee--CCEEEEEecC-eEEEEeCCCC----------ceeeeeccccCCCCcccEEEEEEeCCe-
Q 013717 89 CINSVQLGHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGT----------TWTSINTFNDNDSSSGSVKSVTFCDGK- 154 (437)
Q Consensus 89 ~~~~~~~~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~----------~~~~~~~~~~~~~h~~~v~~l~~~~~~- 154 (437)
..++.++.....|.+++|+ |.+.+.|+.. +.+|.-...- .......++..+.|.+.|.|.+|++.+
T Consensus 23 f~~i~~l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge 102 (350)
T KOG0641|consen 23 FEAINILEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE 102 (350)
T ss_pred eEEEEEecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC
Confidence 4555666888999999999 8999999988 8888765431 001111122235699999999999776
Q ss_pred -EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC------CeEEE
Q 013717 155 -IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN------GLIYS 227 (437)
Q Consensus 155 -l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~l~~ 227 (437)
+++|+.|.+|++...+.......-. ...+.-|.+.|..++|-. ..|++
T Consensus 103 liatgsndk~ik~l~fn~dt~~~~g~-------------------------dle~nmhdgtirdl~fld~~~s~~~il~s 157 (350)
T KOG0641|consen 103 LIATGSNDKTIKVLPFNADTCNATGH-------------------------DLEFNMHDGTIRDLAFLDDPESGGAILAS 157 (350)
T ss_pred eEEecCCCceEEEEecccccccccCc-------------------------ceeeeecCCceeeeEEecCCCcCceEEEe
Confidence 9999999999998776543222111 112345999999999943 56666
Q ss_pred EE-CCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCc---cccEEEE
Q 013717 228 VS-WDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKH---KSAVNAL 303 (437)
Q Consensus 228 ~~-~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~---~~~i~~~ 303 (437)
++ .|..|++-|..+++..+.+.+|.+.|.++---..-.+++|+.|.+|++||++.+.....+-..+.+. .+.|.++
T Consensus 158 ~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav 237 (350)
T KOG0641|consen 158 AGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAV 237 (350)
T ss_pred cCCCcceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEE
Confidence 54 5788899999999999999999999998854434449999999999999998765332222223322 3679999
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCC-eeeee
Q 013717 304 ALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGR-FGCLA 380 (437)
Q Consensus 304 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~-~~~~~ 380 (437)
+..|.|++|++|-.|....+||++.++ .++.+..|...|.|+.|++. ++++++.|..|++=|+...-. ..++.
T Consensus 238 ~vdpsgrll~sg~~dssc~lydirg~r----~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~ 313 (350)
T KOG0641|consen 238 AVDPSGRLLASGHADSSCMLYDIRGGR----MIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIM 313 (350)
T ss_pred EECCCcceeeeccCCCceEEEEeeCCc----eeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceE
Confidence 999999999999999999999999887 56667889999999999987 999999999999999875321 12455
Q ss_pred eecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717 381 VLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 381 ~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
....|++.+..+.|+|.+- -+++.+.|.++.+|-+.
T Consensus 314 vv~ehkdk~i~~rwh~~d~-----sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 314 VVAEHKDKAIQCRWHPQDF-----SFISSSADKTATLWALN 349 (350)
T ss_pred EEEeccCceEEEEecCccc-----eeeeccCcceEEEeccC
Confidence 6677999999999999873 69999999999999764
No 77
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=6.8e-30 Score=231.86 Aligned_cols=245 Identities=19% Similarity=0.267 Sum_probs=190.6
Q ss_pred CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCc----------------------------e---------------
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTT----------------------------W--------------- 129 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~----------------------------~--------------- 129 (437)
.|.+.|.++.|+ |+|||+|+.| .|+||.+...+ .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 799999999999 9999999999 99999986500 0
Q ss_pred ------------eeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCC
Q 013717 130 ------------TSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNS 196 (437)
Q Consensus 130 ------------~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (437)
-....+..+.+|.+.|..|.|+.++ |++++.|.+||+|++...+++..+.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~----------------- 407 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS----------------- 407 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-----------------
Confidence 0001112237899999999999665 9999999999999999887766654
Q ss_pred eeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCC
Q 013717 197 YVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSAD 272 (437)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d 272 (437)
|.+.|+|++|+| +++++|+-||.||||++...+.+.- ..-..-|++++|.|||+ .++|+.+
T Consensus 408 --------------HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W-~Dl~~lITAvcy~PdGk~avIGt~~ 472 (712)
T KOG0283|consen 408 --------------HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDW-NDLRDLITAVCYSPDGKGAVIGTFN 472 (712)
T ss_pred --------------cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEee-hhhhhhheeEEeccCCceEEEEEec
Confidence 999999999999 9999999999999999988765543 34558899999999999 9999999
Q ss_pred CeEEEecCCCCcccceeeEEee----CccccEEEEEEccC-CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceE
Q 013717 273 RKIRVWAKPFNEKRHALIATLE----KHKSAVNALALSDD-GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAIL 347 (437)
Q Consensus 273 g~v~iwd~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~ 347 (437)
|.+++|+............... .....|+.+.|.|. -..+++.+.|..|+|||.++.....++.+....+...-.
T Consensus 473 G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~A 552 (712)
T KOG0283|consen 473 GYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISA 552 (712)
T ss_pred cEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceee
Confidence 9999998765432111111111 11237999999984 346777889999999999776655555544334343345
Q ss_pred EEEeeCCEEEEEeCCCcEEEeeCCC
Q 013717 348 CLINVAGLLMSGSADRTVRIWQRGS 372 (437)
Q Consensus 348 ~~~~~~~~l~~~~~dg~i~iwd~~~ 372 (437)
.+..+|.+|+++++|..|+||+...
T Consensus 553 sfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 553 SFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred eEccCCCEEEEeecCceEEEEeCCC
Confidence 6666888999999999999999743
No 78
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=3.1e-29 Score=200.48 Aligned_cols=286 Identities=20% Similarity=0.292 Sum_probs=222.1
Q ss_pred CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCc----------eeeeeccccCCCCcccEEEEEEeC--Ce-EEEE
Q 013717 96 GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTT----------WTSINTFNDNDSSSGSVKSVTFCD--GK-IFTA 158 (437)
Q Consensus 96 ~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~----------~~~~~~~~~~~~h~~~v~~l~~~~--~~-l~s~ 158 (437)
.|.+.|+++.+. |+|+++|+.| .|.+||++... -.++.......+|.-.|..+.|.| .+ +.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 788999999998 9999999999 99999998632 112212223367899999999984 33 8899
Q ss_pred ecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-----CeEEEEECCCc
Q 013717 159 HQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-----GLIYSVSWDKS 233 (437)
Q Consensus 159 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~~~~~dg~ 233 (437)
+.|.++++||.++.+....++ .++.|.+-+++| .++++|..|-+
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~-------------------------------me~~VYshamSp~a~sHcLiA~gtr~~~ 169 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFK-------------------------------MEGKVYSHAMSPMAMSHCLIAAGTRDVQ 169 (397)
T ss_pred cccceEEEeecccceeeEEee-------------------------------cCceeehhhcChhhhcceEEEEecCCCc
Confidence 999999999999876443332 556677777766 67888899999
Q ss_pred EEEEECCCcceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcc-----------cceeeEEeeCccccE
Q 013717 234 LKIWRASDLRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEK-----------RHALIATLEKHKSAV 300 (437)
Q Consensus 234 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~-----------~~~~~~~~~~~~~~i 300 (437)
|++-|+..|.+.+.+.+|.+.|.++.|+|... |++|+.||.|++||++.... ....++.-..|.+.+
T Consensus 170 VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkv 249 (397)
T KOG4283|consen 170 VRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKV 249 (397)
T ss_pred EEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccccee
Confidence 99999999999999999999999999999887 89999999999999975321 112222334678899
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccce-EE--E-EeeCCEEEEEeCCCcEEEeeCCCCCCe
Q 013717 301 NALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI-LC--L-INVAGLLMSGSADRTVRIWQRGSDGRF 376 (437)
Q Consensus 301 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i-~~--~-~~~~~~l~~~~~dg~i~iwd~~~~~~~ 376 (437)
..++|..+|.++++.+.|..+++|+..+++.......... |...+ .. + .-+...++---.++.+.++++-.+.
T Consensus 250 ngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~-~n~~~~~~~~~~~~~s~vfv~~p~~~~lall~~~sgs-- 326 (397)
T KOG4283|consen 250 NGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPII-HNQTTSFAVHIQSMDSDVFVLFPNDGSLALLNLLEGS-- 326 (397)
T ss_pred eeeeecccchhhhhccCccceEEeecccCccccccccccc-ccccccceEEEeecccceEEEEecCCeEEEEEccCce--
Confidence 9999999999999999999999999998865543332221 11110 11 1 1222344444455889999999877
Q ss_pred eeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717 377 GCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 377 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
.+..+..|-..|.+.++-|+-. ...+|+.|+.|..|-..
T Consensus 327 -~ir~l~~h~k~i~c~~~~~~fq-----~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 327 -FVRRLSTHLKRINCAAYRPDFE-----QCFTGDMNGNIYMWSPA 365 (397)
T ss_pred -EEEeeecccceeeEEeecCchh-----hhhccccCCcccccccc
Confidence 8889999988999999988875 48999999999999873
No 79
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=4.4e-30 Score=214.26 Aligned_cols=270 Identities=19% Similarity=0.259 Sum_probs=220.0
Q ss_pred cceeeccccccccccCCCceeEEecCCCc-ceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeec
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHL-CINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINT 134 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~-~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~ 134 (437)
..+.|.+....+++.+.|..|.+|+.... ...+.++ |-.++|+++.|. +.++++++.| .+++|++.. .+...+
T Consensus 179 ~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~--~r~~~T 256 (459)
T KOG0288|consen 179 HDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDS--LRLRHT 256 (459)
T ss_pred ceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccc--hhhhhh
Confidence 46788899999999999999999999543 4577777 999999999998 8888899999 999999998 455666
Q ss_pred cccCCCCcccEEEEEEeCC--eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC
Q 013717 135 FNDNDSSSGSVKSVTFCDG--KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG 212 (437)
Q Consensus 135 ~~~~~~h~~~v~~l~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (437)
+ .+|+..|+++.|.-. .+++|+.|.+|++||+....+.+.+. ..
T Consensus 257 L---sGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-------------------------------~~ 302 (459)
T KOG0288|consen 257 L---SGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-------------------------------PG 302 (459)
T ss_pred h---cccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-------------------------------cc
Confidence 6 689999999999843 39999999999999999865444333 34
Q ss_pred CcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeE
Q 013717 213 DAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIA 291 (437)
Q Consensus 213 ~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~ 291 (437)
..+.+|...+..+++|-.|++|++||.+...+......+. .|+++..++++. +++.+.|..+.+.|+++.........
T Consensus 303 S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA 381 (459)
T KOG0288|consen 303 SQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSA 381 (459)
T ss_pred ccccceEecceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeec
Confidence 5667777778889999999999999999999999987554 899999999999 99999999999999986542222211
Q ss_pred EeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC--CEEEEEeCCCcEEEe
Q 013717 292 TLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA--GLLMSGSADRTVRIW 368 (437)
Q Consensus 292 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~i~iw 368 (437)
.-.......+.+.|||++.|+++|+.||.|+||++.+++....+.. ......|+++.|++ ..+++++.++.+.+|
T Consensus 382 ~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~--s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 382 EGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL--STSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred cccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc--CCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 1112334589999999999999999999999999998875544332 22223688888875 499999999999999
No 80
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=9.4e-28 Score=220.32 Aligned_cols=261 Identities=18% Similarity=0.240 Sum_probs=189.1
Q ss_pred eeCCEEEEEecC-eEEEEeCCCCceee--------eeccccCCCCcccEEEEEEeC-C--eEEEEecCCeEEEEeCCCCc
Q 013717 106 VHHNFLYAASSH-EINVYDRTGTTWTS--------INTFNDNDSSSGSVKSVTFCD-G--KIFTAHQDCKIRVWQLTPTK 173 (437)
Q Consensus 106 ~~~~~l~s~~~d-~v~vwd~~~~~~~~--------~~~~~~~~~h~~~v~~l~~~~-~--~l~s~~~dg~i~iwd~~~~~ 173 (437)
+.+..+++++.+ ....|+...+.... ......+.+|.+.|.+++|+| + .|++|+.|++|++||+.++.
T Consensus 30 ~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~ 109 (493)
T PTZ00421 30 WDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEG 109 (493)
T ss_pred CCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCc
Confidence 335667777777 77788766542110 011112368999999999997 3 39999999999999997653
Q ss_pred ccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeec
Q 013717 174 HHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKA 250 (437)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 250 (437)
...... .....+.+|...|.+++|+| ++|++++.|++|+|||+.+++.+..+..
T Consensus 110 ~~~~~~-----------------------~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~ 166 (493)
T PTZ00421 110 LTQNIS-----------------------DPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC 166 (493)
T ss_pred cccccC-----------------------cceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC
Confidence 211100 11223457999999999998 5899999999999999999999999989
Q ss_pred ccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCcccc-EEEEEEccCCCEEEEEe----CCCcEEEE
Q 013717 251 HEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSA-VNALALSDDGTVLFSGA----CDRSILVW 324 (437)
Q Consensus 251 ~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~----~dg~i~i~ 324 (437)
|...|.+++|+|++. |++++.|+.|++||++... .+..+.+|.+. +..+.|.+++..+++++ .|+.|++|
T Consensus 167 h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~----~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklW 242 (493)
T PTZ00421 167 HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGT----IVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLW 242 (493)
T ss_pred CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCc----EEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEE
Confidence 999999999999998 9999999999999987643 56667777654 45678899888777654 47899999
Q ss_pred ECCCCccceEEeeeecccccceEEEEe--eCCEEEEEe-CCCcEEEeeCCCCCCeeeeeeec-CCCCCeeEEEEEccC
Q 013717 325 DREDSANHMVVTGALRGHGKAILCLIN--VAGLLMSGS-ADRTVRIWQRGSDGRFGCLAVLE-GHTKPVKSLTAVTEE 398 (437)
Q Consensus 325 d~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~ 398 (437)
|+++......... ..+...+....+ ++++|++++ .|+.|++||+..+. ++.... .+..++.+++|.|..
T Consensus 243 Dlr~~~~p~~~~~--~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~---~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 243 DTRKMASPYSTVD--LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER---LTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred eCCCCCCceeEec--cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc---eEEEeeccCCCCCcceEecccc
Confidence 9987654332211 112223333334 455777776 59999999999876 333332 355678999999864
No 81
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=4.3e-29 Score=211.12 Aligned_cols=255 Identities=20% Similarity=0.300 Sum_probs=209.6
Q ss_pred CCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717 140 SSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT 216 (437)
Q Consensus 140 ~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 216 (437)
.|.+.|+.+.+.|.. +++.+..+.|.|||............ .......+.+|...-+
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~--------------------~~~Pdl~L~gH~~eg~ 181 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG--------------------ECRPDLRLKGHEKEGY 181 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc--------------------cCCCceEEEeeccccc
Confidence 488999999998654 77788999999999876432221110 0112234567888888
Q ss_pred EEEeCC---CeEEEEECCCcEEEEECCCcc-------eEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCc
Q 013717 217 GLAVNN---GLIYSVSWDKSLKIWRASDLR-------CLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNE 284 (437)
Q Consensus 217 ~~~~~~---~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~ 284 (437)
+++|++ ..+++++.|++|++||+.... ....+.+|...|..++|++-.. |++++.|+.+.|||++.+
T Consensus 182 glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~- 260 (422)
T KOG0264|consen 182 GLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN- 260 (422)
T ss_pred ccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC-
Confidence 899988 899999999999999997543 3455678999999999998665 899999999999999963
Q ss_pred ccceeeEEeeCccccEEEEEEcc-CCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEEe
Q 013717 285 KRHALIATLEKHKSAVNALALSD-DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGS 360 (437)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~ 360 (437)
..+......+|.+.|.|++|+| ++..||+|+.|++|.+||+++... ....+.+|...|.++.|++. .||+++
T Consensus 261 -~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~---~lh~~e~H~dev~~V~WSPh~etvLASSg 336 (422)
T KOG0264|consen 261 -TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK---PLHTFEGHEDEVFQVEWSPHNETVLASSG 336 (422)
T ss_pred -CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc---CceeccCCCcceEEEEeCCCCCceeEecc
Confidence 4456677788999999999999 567889999999999999997544 55668899999999999976 999999
Q ss_pred CCCcEEEeeCCCCC-----------CeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717 361 ADRTVRIWQRGSDG-----------RFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 361 ~dg~i~iwd~~~~~-----------~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
.|+.+.|||+..-. +.+++..-.||...|..+.|+|..+. .|+|+++|+.+.||++...
T Consensus 337 ~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW----~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 337 TDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPW----TIASVAEDNILQIWQMAEN 406 (422)
T ss_pred cCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCe----EEEEecCCceEEEeecccc
Confidence 99999999986532 24567778899999999999999986 9999999999999998744
No 82
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.6e-29 Score=221.09 Aligned_cols=323 Identities=20% Similarity=0.272 Sum_probs=241.6
Q ss_pred cccccccccCCCceeEEecCCCcce-----eeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccc
Q 013717 66 PSVPSLQKLSPDETINFSSASHLCI-----NSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFN 136 (437)
Q Consensus 66 ~~~~~~~s~s~dg~i~~~~~~~~~~-----~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~ 136 (437)
|..+.+.+++.||.|+.|+...... ....+ .|.+.|..++.. ++.|+++|.| +|++|+...+.--+..++
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~sti- 113 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTI- 113 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhh-
Confidence 4555699999999999999954433 46667 899999999987 8899999999 999999988533445555
Q ss_pred cCCCCcccEEEEEE-eCCe--EEEEecCCeEEEEeCCCCcc--cccccccCccccceeeecCCCCeeEEeeccceeeecC
Q 013717 137 DNDSSSGSVKSVTF-CDGK--IFTAHQDCKIRVWQLTPTKH--HKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH 211 (437)
Q Consensus 137 ~~~~h~~~v~~l~~-~~~~--l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (437)
..|...|.|+++ ..+. +++||.|+.|.+||++++.. ......++.. ..-.++
T Consensus 114 --r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~---------------------sl~sG~ 170 (735)
T KOG0308|consen 114 --RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVN---------------------SLGSGP 170 (735)
T ss_pred --hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccc---------------------cCCCCC
Confidence 679999999999 4443 99999999999999998742 1111111100 001268
Q ss_pred CCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccce
Q 013717 212 GDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHA 288 (437)
Q Consensus 212 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~ 288 (437)
...|++++.++ ..+++|+..+.|++||.++++.+..+++|...|.++..++||. +++++.||+|++||+... .
T Consensus 171 k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ----r 246 (735)
T KOG0308|consen 171 KDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ----R 246 (735)
T ss_pred ccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc----c
Confidence 89999999999 5899999999999999999999999999999999999999998 999999999999988643 4
Q ss_pred eeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeCCCcEE
Q 013717 289 LIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVR 366 (437)
Q Consensus 289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~ 366 (437)
++.++..|...|.++..+|+=.++++|+.||.|+.=|+++..... ++. ....+|..+..+ .+-+-+++.|+.|+
T Consensus 247 Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~t-lic---k~daPv~~l~~~~~~~~~WvtTtds~I~ 322 (735)
T KOG0308|consen 247 CLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKST-LIC---KEDAPVLKLHLHEHDNSVWVTTTDSSIK 322 (735)
T ss_pred eeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhhe-Eee---cCCCchhhhhhccccCCceeeeccccce
Confidence 788888999999999999999999999999999999998853222 211 123334444333 34457788899999
Q ss_pred EeeCCCCCCeeeeeeecCC---------------------CCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 367 IWQRGSDGRFGCLAVLEGH---------------------TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 367 iwd~~~~~~~~~~~~~~~h---------------------~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
-|..+-.-....-..+..| ..+|..-+...+. +.++|=..+|.+.+||+-....
T Consensus 323 rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dk-----RhVlTkDa~gnv~lwDIl~~~~ 397 (735)
T KOG0308|consen 323 RWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDK-----RHVLTKDAKGNVALWDILACVK 397 (735)
T ss_pred ecCCccccccccCCCCCcccccCCCccccccCCCceeccCchhhhhhhhhcCc-----ceEeeecCCCCEEEEEeeeeee
Confidence 9976532110000000000 0122222233333 5899999999999999876654
No 83
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.5e-28 Score=209.52 Aligned_cols=276 Identities=21% Similarity=0.316 Sum_probs=221.4
Q ss_pred CccCCeEEEEee---CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCC
Q 013717 96 GHKLPIGCIAVH---HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLT 170 (437)
Q Consensus 96 ~h~~~V~~l~~~---~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~ 170 (437)
.....|.+++|+ +.-+|+.+.-.+.||+..+ ....+++ ......|.+++|-.|+ +++|...|.|+++|..
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~--~~~~k~~---srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k 98 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVT--RSVRKTF---SRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMK 98 (487)
T ss_pred cccCcceeEecCCCCCCceEEecccEEEEEecch--hhhhhhH---HhhccceeEEEeecCCeEEEccCCcCcEEEeccc
Confidence 445789999999 4556666655899999888 3444444 3467889999998554 7788889999999966
Q ss_pred CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEE
Q 013717 171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLES 247 (437)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~ 247 (437)
+....+.+ .+|+.+|..+.|++ ..+++|+.|+.+++||+.+......
T Consensus 99 ~r~iLR~~------------------------------~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~ 148 (487)
T KOG0310|consen 99 SRVILRQL------------------------------YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAE 148 (487)
T ss_pred cHHHHHHH------------------------------hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEE
Confidence 53333322 36999999999998 7889999999999999999887668
Q ss_pred eecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEE
Q 013717 248 IKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD 325 (437)
Q Consensus 248 ~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 325 (437)
+.+|++.|.|.+|+|... +++|+.||.|++||++... ..+.++ .|..+|..+.+-|.|..|++++. ..|+|||
T Consensus 149 l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~el-nhg~pVe~vl~lpsgs~iasAgG-n~vkVWD 223 (487)
T KOG0310|consen 149 LSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVEL-NHGCPVESVLALPSGSLIASAGG-NSVKVWD 223 (487)
T ss_pred ecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC---ceeEEe-cCCCceeeEEEcCCCCEEEEcCC-CeEEEEE
Confidence 889999999999999765 9999999999999988654 344455 48999999999999999999875 5699999
Q ss_pred CCCCccceEEeeeecccccceEEEEeeC--CEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCce
Q 013717 326 REDSANHMVVTGALRGHGKAILCLINVA--GLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGV 403 (437)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 403 (437)
+-++... ......|...|+|+.+.. ..|++|+-|+.+++||+.+ ++.+..+. ..++|.+|+.+|++.
T Consensus 224 l~~G~ql---l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~---~Kvv~s~~-~~~pvLsiavs~dd~---- 292 (487)
T KOG0310|consen 224 LTTGGQL---LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTN---YKVVHSWK-YPGPVLSIAVSPDDQ---- 292 (487)
T ss_pred ecCCcee---hhhhhcccceEEEEEeecCCceEeecccccceEEEEccc---eEEEEeee-cccceeeEEecCCCc----
Confidence 9866543 333445999999999876 5999999999999999775 33666555 678999999999874
Q ss_pred EEEEEecCCCcEEEEeeccC
Q 013717 404 VSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 404 ~~l~s~~~dg~i~iw~~~~~ 423 (437)
.++.|-.||.+.+=+....
T Consensus 293 -t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 293 -TVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred -eEEEecccceeeeehhhcc
Confidence 6999999999888765443
No 84
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.9e-28 Score=196.71 Aligned_cols=257 Identities=19% Similarity=0.296 Sum_probs=196.0
Q ss_pred eeec-CccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe----EEEEecCCeEE
Q 013717 92 SVQL-GHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK----IFTAHQDCKIR 165 (437)
Q Consensus 92 ~~~~-~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----l~s~~~dg~i~ 165 (437)
...+ .|.++|+|+|.++.++|+|+.| +|+|||+... ..+..+ ..|.+.|+++.|.+.. |++|+.||.|.
T Consensus 36 lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~--~qlg~l---l~HagsitaL~F~~~~S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 36 LFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKR--KQLGIL---LSHAGSITALKFYPPLSKSHLLSGSDDGHII 110 (362)
T ss_pred cccccccccceeEEEecceeEeccCCCCcEEEEeccch--hhhcce---eccccceEEEEecCCcchhheeeecCCCcEE
Confidence 3445 8999999999999999999999 9999999883 333333 5699999999999543 99999999999
Q ss_pred EEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcc
Q 013717 166 VWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLR 243 (437)
Q Consensus 166 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~ 243 (437)
+|+...-.....+ .+|.+.|+.++++| ++.++.+.|+.++.||+-+|+
T Consensus 111 iw~~~~W~~~~sl------------------------------K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 111 IWRVGSWELLKSL------------------------------KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred EEEcCCeEEeeee------------------------------cccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence 9999876544433 36999999999999 788889999999999999998
Q ss_pred eEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEE
Q 013717 244 CLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSIL 322 (437)
Q Consensus 244 ~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 322 (437)
.-..++ -....+.+.|+|.|. ++.+.. ..|-+|.+.... ....+. ....+.++.|. ++..|++|..|+.|.
T Consensus 161 ~a~v~~-L~~~at~v~w~~~Gd~F~v~~~-~~i~i~q~d~A~----v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~ 232 (362)
T KOG0294|consen 161 VAFVLN-LKNKATLVSWSPQGDHFVVSGR-NKIDIYQLDNAS----VFREIE-NPKRILCATFL-DGSELLVGGDNEWIS 232 (362)
T ss_pred cceeec-cCCcceeeEEcCCCCEEEEEec-cEEEEEecccHh----Hhhhhh-ccccceeeeec-CCceEEEecCCceEE
Confidence 766665 233345599999999 666655 468899765432 222222 22457777776 566899999999999
Q ss_pred EEECCCCccceEEeeeecccccceEEEEeeCC----EEEEEeCCCcEEEeeCCCCC--CeeeeeeecCCCCCeeEEEEEc
Q 013717 323 VWDREDSANHMVVTGALRGHGKAILCLINVAG----LLMSGSADRTVRIWQRGSDG--RFGCLAVLEGHTKPVKSLTAVT 396 (437)
Q Consensus 323 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~h~~~v~~l~~~~ 396 (437)
+||..+.. ....+.+|...|-.+.+..+ +|++++.||.|+|||++... +..++..+.- ...++|+...-
T Consensus 233 ~~D~ds~~----~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~~~ 307 (362)
T KOG0294|consen 233 LKDTDSDT----PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRVKL 307 (362)
T ss_pred EeccCCCc----cceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeeehh
Confidence 99998754 44557789999999885433 99999999999999998753 2234444443 45666666543
No 85
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3e-28 Score=195.46 Aligned_cols=269 Identities=18% Similarity=0.264 Sum_probs=209.5
Q ss_pred CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCC-ceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEe
Q 013717 96 GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGT-TWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQ 168 (437)
Q Consensus 96 ~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd 168 (437)
.-.+.|.+|+|+ ..+++.+|-| +||+|+++.. .... .....|.++|.+++|++++ +++|+.|+.+++||
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~----ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP----KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc----hhhhccCCCeEEEEEccCCceEEeeccCCceEEEE
Confidence 567889999999 5777788889 9999999873 2222 2235799999999999765 99999999999999
Q ss_pred CCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC----CeEEEEECCCcEEEEECCCcce
Q 013717 169 LTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN----GLIYSVSWDKSLKIWRASDLRC 244 (437)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~ 244 (437)
+.+++....- .|..+|..+.|-+ ..|++|+.|++|+.||.+...+
T Consensus 101 L~S~Q~~~v~-------------------------------~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~p 149 (347)
T KOG0647|consen 101 LASGQVSQVA-------------------------------AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNP 149 (347)
T ss_pred ccCCCeeeee-------------------------------ecccceeEEEEecCCCcceeEecccccceeecccCCCCe
Confidence 9998654433 4999999999976 5789999999999999999988
Q ss_pred EEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEE
Q 013717 245 LESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVW 324 (437)
Q Consensus 245 ~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 324 (437)
+.++. ..+.+.++..- ...++++..++.|.+|+++....+.+.+.. ..+-.+++|+..+|....+.|+-+|.+.|.
T Consensus 150 v~t~~-LPeRvYa~Dv~-~pm~vVata~r~i~vynL~n~~te~k~~~S--pLk~Q~R~va~f~d~~~~alGsiEGrv~iq 225 (347)
T KOG0647|consen 150 VATLQ-LPERVYAADVL-YPMAVVATAERHIAVYNLENPPTEFKRIES--PLKWQTRCVACFQDKDGFALGSIEGRVAIQ 225 (347)
T ss_pred eeeee-ccceeeehhcc-CceeEEEecCCcEEEEEcCCCcchhhhhcC--cccceeeEEEEEecCCceEeeeecceEEEE
Confidence 88886 55667777653 223788889999999999765543333221 244568999999998888999999999999
Q ss_pred ECCCCccceEEeeeecccc---------cceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEE
Q 013717 325 DREDSANHMVVTGALRGHG---------KAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLT 393 (437)
Q Consensus 325 d~~~~~~~~~~~~~~~~~~---------~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~ 393 (437)
.+..+.....+ .++.|. -.|.+++|++. .|+|++.||++.+||-.... .+.....|..+|++..
T Consensus 226 ~id~~~~~~nF--tFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~---kLk~s~~~~qpItcc~ 300 (347)
T KOG0647|consen 226 YIDDPNPKDNF--TFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDART---KLKTSETHPQPITCCS 300 (347)
T ss_pred ecCCCCccCce--eEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhh---hhhccCcCCCccceeE
Confidence 99876322111 122222 34677888876 99999999999999987655 6777788999999999
Q ss_pred EEccCCCCceEEEEEecCC
Q 013717 394 AVTEEGQNGVVSVFSGSLD 412 (437)
Q Consensus 394 ~~~~~~~~~~~~l~s~~~d 412 (437)
|+.+|.- +..+.|.|
T Consensus 301 fn~~G~i----faYA~gYD 315 (347)
T KOG0647|consen 301 FNRNGSI----FAYALGYD 315 (347)
T ss_pred ecCCCCE----EEEEeecc
Confidence 9999863 55566655
No 86
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=1.9e-28 Score=210.12 Aligned_cols=278 Identities=18% Similarity=0.227 Sum_probs=210.5
Q ss_pred cceeeccccccccccCCCceeEEecCCCcceee---eec--CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCce--
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINS---VQL--GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTW-- 129 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~---~~~--~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~-- 129 (437)
.++.+.|+...+++++.|-++.+||.+.-.... +.+ .....|.++.|+ |+.|++.+.. ..+|+|.....+
T Consensus 171 sal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e 250 (641)
T KOG0772|consen 171 SALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVE 250 (641)
T ss_pred EEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeee
Confidence 577899999999999999999999995433222 223 567789999999 8888888878 999999887322
Q ss_pred -----eeeeccccCCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCccccc-ccccCccccceeeecCCCCeeEE
Q 013717 130 -----TSINTFNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKL-KTTLPTVNDRLLRFMLPNSYVTV 200 (437)
Q Consensus 130 -----~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 200 (437)
+.+..+..-++|...++|-+|.|.. +++++.||++|+||++..+.... +....
T Consensus 251 ~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~------------------ 312 (641)
T KOG0772|consen 251 FSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP------------------ 312 (641)
T ss_pred eeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc------------------
Confidence 2233334448999999999999764 99999999999999987653222 11111
Q ss_pred eeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcc--eEEE-eecccc--cEEEEEEecCCe-EEEEeCC
Q 013717 201 RRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLR--CLES-IKAHED--AVNAVAVSAGGT-VYTGSAD 272 (437)
Q Consensus 201 ~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~--~~~~-~~~~~~--~v~~~~~~~~~~-l~~~~~d 272 (437)
..+..-+++.++|++ +.||+|+.||.|.+|+..... .... -..|.. .|+||.|+++|+ |++-+.|
T Consensus 313 -------~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D 385 (641)
T KOG0772|consen 313 -------AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFD 385 (641)
T ss_pred -------CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCC
Confidence 013455788999998 889999999999999975432 2222 236766 899999999999 9999999
Q ss_pred CeEEEecCCCCcccceeeEEeeC--ccccEEEEEEccCCCEEEEEeC------CCcEEEEECCCCccceEEeeeeccccc
Q 013717 273 RKIRVWAKPFNEKRHALIATLEK--HKSAVNALALSDDGTVLFSGAC------DRSILVWDREDSANHMVVTGALRGHGK 344 (437)
Q Consensus 273 g~v~iwd~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~------dg~i~i~d~~~~~~~~~~~~~~~~~~~ 344 (437)
+++++||++... +++....+ ..-+-+.++|+|+.++|++|.. .|.+.+||..+... ...+.-...
T Consensus 386 ~tLKvWDLrq~k---kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~----v~ki~i~~a 458 (641)
T KOG0772|consen 386 DTLKVWDLRQFK---KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDT----VYKIDISTA 458 (641)
T ss_pred Cceeeeeccccc---cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceee----EEEecCCCc
Confidence 999999998654 23333333 2335678899999999999864 57899999876543 333444477
Q ss_pred ceEEEEeeCC--EEEEEeCCCcEEEee
Q 013717 345 AILCLINVAG--LLMSGSADRTVRIWQ 369 (437)
Q Consensus 345 ~i~~~~~~~~--~l~~~~~dg~i~iwd 369 (437)
.|..+.|++. .|++|+.||.+++|-
T Consensus 459 Svv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 459 SVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred eEEEEeecchhhheeeecCCCceEEEE
Confidence 7888899987 889999999999874
No 87
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.4e-29 Score=219.72 Aligned_cols=283 Identities=19% Similarity=0.363 Sum_probs=220.5
Q ss_pred ccCCeE---EEEee---CCEEEEEecC-eEEEEeCCCCceeeeec-cccCCCCcccEEEEEEeCCe--EEEEecCCeEEE
Q 013717 97 HKLPIG---CIAVH---HNFLYAASSH-EINVYDRTGTTWTSINT-FNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRV 166 (437)
Q Consensus 97 h~~~V~---~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~~-~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~i 166 (437)
|...|. ++..+ ++||++|+.| .|++|+........... ...++.|...|+.++...+. |++++.|-+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 444444 44444 7899999999 99999987643221111 22337799999999988544 999999999999
Q ss_pred EeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe-CC--CeEEEEECCCcEEEEECCCc-
Q 013717 167 WQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV-NN--GLIYSVSWDKSLKIWRASDL- 242 (437)
Q Consensus 167 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~--~~l~~~~~dg~i~iwd~~~~- 242 (437)
|+..... ..+.. .+..|.+.|.|+++ .+ ..+++|+-|+.|.+||+.++
T Consensus 100 W~~~~~~-~~c~s---------------------------tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~ 151 (735)
T KOG0308|consen 100 WNAHKDN-TFCMS---------------------------TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGT 151 (735)
T ss_pred eecccCc-chhHh---------------------------hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcc
Confidence 9988663 12222 22369999999999 33 89999999999999999977
Q ss_pred -ceEEE--------ee-cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCE
Q 013717 243 -RCLES--------IK-AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTV 311 (437)
Q Consensus 243 -~~~~~--------~~-~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 311 (437)
+.+.. +. ++...|++++.++.|. +++|+.++.|++||.++.. .+..+++|...|..+..++||+.
T Consensus 152 ~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~----kimkLrGHTdNVr~ll~~dDGt~ 227 (735)
T KOG0308|consen 152 ATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK----KIMKLRGHTDNVRVLLVNDDGTR 227 (735)
T ss_pred hhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccccc----ceeeeeccccceEEEEEcCCCCe
Confidence 22222 22 6788999999999999 9999999999999887664 56677799999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCe
Q 013717 312 LFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPV 389 (437)
Q Consensus 312 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 389 (437)
+++++.||+|++||+...+ ....+..|...++++..++. .+++|+.||.|..=|+++... + ..+-....+|
T Consensus 228 ~ls~sSDgtIrlWdLgqQr----Cl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~--~-tlick~daPv 300 (735)
T KOG0308|consen 228 LLSASSDGTIRLWDLGQQR----CLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK--S-TLICKEDAPV 300 (735)
T ss_pred EeecCCCceEEeeeccccc----eeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchh--h-eEeecCCCch
Confidence 9999999999999997655 44456778888999988877 899999999999999998542 2 2233345678
Q ss_pred eEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717 390 KSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 390 ~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
..+......+. +..+..|+.|+-|..+..
T Consensus 301 ~~l~~~~~~~~-----~WvtTtds~I~rW~~~~~ 329 (735)
T KOG0308|consen 301 LKLHLHEHDNS-----VWVTTTDSSIKRWKLEPD 329 (735)
T ss_pred hhhhhccccCC-----ceeeeccccceecCCccc
Confidence 88877755543 578889999999987644
No 88
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=8e-28 Score=194.47 Aligned_cols=298 Identities=18% Similarity=0.239 Sum_probs=210.2
Q ss_pred eec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe---EEEEecCCeEE
Q 013717 93 VQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIR 165 (437)
Q Consensus 93 ~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~ 165 (437)
..| ||.+.|++++|+ |.+||+++.| .|++|+++....+.-+.+.. .-.-+..+.+.|.||. ++++-...+++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~-nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ-NVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-cccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 355 999999999999 9999999999 99999998843333332221 1123467889999886 66666778899
Q ss_pred EEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcc
Q 013717 166 VWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLR 243 (437)
Q Consensus 166 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~ 243 (437)
+|.+...+....... .+......+-..|.-.+..+-... .+|++++.|..|.+|+++ |+
T Consensus 159 vyk~~K~~dG~~~~~------------------~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq 219 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHH------------------FVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQ 219 (420)
T ss_pred EEEeeecccCCCCcc------------------cccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cc
Confidence 998764432111000 001111112234666666665544 899999999999999998 89
Q ss_pred eEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCc----ccceeeEEeeCccccEEEEEEccCCCEEEEEeCC
Q 013717 244 CLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNE----KRHALIATLEKHKSAVNALALSDDGTVLFSGACD 318 (437)
Q Consensus 244 ~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 318 (437)
.+..+......-+..+.+|+|+ +++++.--.|++|.+-... +.-.....+++|.+.|..++|+++.+.+++.+.|
T Consensus 220 ~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkD 299 (420)
T KOG2096|consen 220 LLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKD 299 (420)
T ss_pred eeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecC
Confidence 9998887777778889999999 8888889999999764222 1223455788999999999999999999999999
Q ss_pred CcEEEEECCCC-------ccceEEeeeecccccce--EEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCe
Q 013717 319 RSILVWDREDS-------ANHMVVTGALRGHGKAI--LCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPV 389 (437)
Q Consensus 319 g~i~i~d~~~~-------~~~~~~~~~~~~~~~~i--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v 389 (437)
|+++|||++-. +........+....+.- +.++++++.|+.+. ...+++|..++++...++. ..|...|
T Consensus 300 G~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e--~~h~~~I 376 (420)
T KOG2096|consen 300 GKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELE--DIHSTTI 376 (420)
T ss_pred CcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHH--HhhcCce
Confidence 99999998521 10111111111122222 45556666666544 4469999999877433332 4588999
Q ss_pred eEEEEEccCCCCceEEEEEecCCCcEEEEe
Q 013717 390 KSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ 419 (437)
Q Consensus 390 ~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~ 419 (437)
.+|+|++++ ++++|+| |..+++..
T Consensus 377 s~is~~~~g-----~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 377 SSISYSSDG-----KYIATCG-DRYVRVIR 400 (420)
T ss_pred eeEEecCCC-----cEEeeec-ceeeeeec
Confidence 999999998 4788887 67888876
No 89
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=1.2e-27 Score=192.74 Aligned_cols=266 Identities=18% Similarity=0.264 Sum_probs=206.9
Q ss_pred CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCC
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTP 171 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~ 171 (437)
.-.+.|.++.|+ ++.|+.++-| .+++||..... ....+ .|..++.+++|.++. +++|+.||.|+.+|+++
T Consensus 11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~--l~~~~----~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS--LKLKF----KHGAPLLDCAFADESTIVTGGLDGQVRRYDLNT 84 (323)
T ss_pred CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh--hhhhe----ecCCceeeeeccCCceEEEeccCceEEEEEecC
Confidence 446789999999 5666666677 99999999852 23332 499999999999765 99999999999999998
Q ss_pred CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee
Q 013717 172 TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK 249 (437)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~ 249 (437)
+...... .|..+|.|+...+ +.+++|+.|++|++||.+.......+.
T Consensus 85 ~~~~~ig-------------------------------th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d 133 (323)
T KOG1036|consen 85 GNEDQIG-------------------------------THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD 133 (323)
T ss_pred Ccceeec-------------------------------cCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc
Confidence 8654433 4999999999997 999999999999999998765555554
Q ss_pred cccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 013717 250 AHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDS 329 (437)
Q Consensus 250 ~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 329 (437)
....|.++... +..|++|+.+..+.+||++...... ...-...+-.+.++++.|++.-+++++-||.|.+=.++..
T Consensus 134 -~~kkVy~~~v~-g~~LvVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s 209 (323)
T KOG1036|consen 134 -QGKKVYCMDVS-GNRLVVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDS 209 (323)
T ss_pred -cCceEEEEecc-CCEEEEeecCceEEEEEcccccchh--hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCc
Confidence 34479888875 4459999999999999998654322 1122234567999999998888999999999998777665
Q ss_pred ccceEEeeeecccc---------cceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccC
Q 013717 330 ANHMVVTGALRGHG---------KAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEE 398 (437)
Q Consensus 330 ~~~~~~~~~~~~~~---------~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 398 (437)
.........++.|. -+|.+++|++- .|+||+.||.|.+||+.+.+ .+..+......|..++|+.++
T Consensus 210 ~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK---rl~q~~~~~~SI~slsfs~dG 286 (323)
T KOG1036|consen 210 EEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRK---RLKQLAKYETSISSLSFSMDG 286 (323)
T ss_pred hHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchh---hhhhccCCCCceEEEEeccCC
Confidence 22222222333332 36788888876 89999999999999999877 566666667789999999998
Q ss_pred CCCceEEEEEec
Q 013717 399 GQNGVVSVFSGS 410 (437)
Q Consensus 399 ~~~~~~~l~s~~ 410 (437)
. .|+.++
T Consensus 287 ~-----~LAia~ 293 (323)
T KOG1036|consen 287 S-----LLAIAS 293 (323)
T ss_pred C-----eEEEEe
Confidence 6 577665
No 90
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.1e-27 Score=202.75 Aligned_cols=290 Identities=21% Similarity=0.312 Sum_probs=227.6
Q ss_pred eeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCcee--eeec----------cccC-CCCcccEEEEEEeCCe
Q 013717 92 SVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWT--SINT----------FNDN-DSSSGSVKSVTFCDGK 154 (437)
Q Consensus 92 ~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~--~~~~----------~~~~-~~h~~~v~~l~~~~~~ 154 (437)
...+ .|.-+|.|++++ +.+.++++.+ +|.=|++.++... .... +... ..|...|.+++.++++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 3444 899999999999 7899999999 9999999886422 1111 1111 3788999999999776
Q ss_pred --EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEEC
Q 013717 155 --IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSW 230 (437)
Q Consensus 155 --l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~ 230 (437)
|++|+.|..|.||+.++.+..+.+ .+|.+.|.+++|-. ..+++++.
T Consensus 215 kylatgg~d~~v~Iw~~~t~ehv~~~------------------------------~ghr~~V~~L~fr~gt~~lys~s~ 264 (479)
T KOG0299|consen 215 KYLATGGRDRHVQIWDCDTLEHVKVF------------------------------KGHRGAVSSLAFRKGTSELYSASA 264 (479)
T ss_pred cEEEecCCCceEEEecCcccchhhcc------------------------------cccccceeeeeeecCccceeeeec
Confidence 999999999999999988755443 47999999999976 89999999
Q ss_pred CCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCC
Q 013717 231 DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDG 309 (437)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 309 (437)
|+.|++|+++....+.++.+|.+.|..|....-++ +-+|+.|+++++|++... ....+.++.+.+-|++|-. .
T Consensus 265 Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-----sqlifrg~~~sidcv~~In-~ 338 (479)
T KOG0299|consen 265 DRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-----SQLIFRGGEGSIDCVAFIN-D 338 (479)
T ss_pred CCceEEEehhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccc-----ceeeeeCCCCCeeeEEEec-c
Confidence 99999999999999999999999999999888888 455559999999998432 3445678888999999985 4
Q ss_pred CEEEEEeCCCcEEEEECCCCccceEEeeeec--------ccccceEEEEeeC--CEEEEEeCCCcEEEeeCCCCC-Ceee
Q 013717 310 TVLFSGACDRSILVWDREDSANHMVVTGALR--------GHGKAILCLINVA--GLLMSGSADRTVRIWQRGSDG-RFGC 378 (437)
Q Consensus 310 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-~~~~ 378 (437)
..+++|+.||.|.+|++...+..+....... .+..+|++++..+ +++++|+.+|.|++|.+..+- ...+
T Consensus 339 ~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~ 418 (479)
T KOG0299|consen 339 EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINL 418 (479)
T ss_pred cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccce
Confidence 5899999999999999987665544332211 1123777777664 499999999999999998763 2345
Q ss_pred eeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717 379 LAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 379 ~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
+..+. -.+.|++|+|++++.. +++..+....+--|-...
T Consensus 419 l~~ls-~~GfVNsl~f~~sgk~----ivagiGkEhRlGRW~~~k 457 (479)
T KOG0299|consen 419 LYSLS-LVGFVNSLAFSNSGKR----IVAGIGKEHRLGRWWCLK 457 (479)
T ss_pred eeecc-cccEEEEEEEccCCCE----EEEecccccccceeeEee
Confidence 55554 5678999999999863 666667776665565443
No 91
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=1.8e-28 Score=207.43 Aligned_cols=254 Identities=22% Similarity=0.282 Sum_probs=203.3
Q ss_pred eecCccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCceeeee-----ccccCCCCcccEEEEEEeCC---eEEEEec
Q 013717 93 VQLGHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTWTSIN-----TFNDNDSSSGSVKSVTFCDG---KIFTAHQ 160 (437)
Q Consensus 93 ~~~~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~-----~~~~~~~h~~~v~~l~~~~~---~l~s~~~ 160 (437)
+.+.|.+.|+.+.+- ...+|+++.+ .|.|||...-...... .-..+.+|...=.+|+|+.. .|++++.
T Consensus 119 ~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~ 198 (422)
T KOG0264|consen 119 QKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSD 198 (422)
T ss_pred EeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccC
Confidence 334899999998887 6788888888 9999998763111111 00022578887788999843 3999999
Q ss_pred CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEE
Q 013717 161 DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIW 237 (437)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iw 237 (437)
|++|++||+......... ......+.+|+..|..++|++ .++++++.|+.+.||
T Consensus 199 d~~i~lwdi~~~~~~~~~-----------------------~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iw 255 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKV-----------------------VDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIW 255 (422)
T ss_pred CCcEEEEeccccccCCcc-----------------------ccceEEeecCCcceehhhccccchhhheeecCCCeEEEE
Confidence 999999999866432110 122345678999999999998 899999999999999
Q ss_pred ECC--CcceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccC-CCEE
Q 013717 238 RAS--DLRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDD-GTVL 312 (437)
Q Consensus 238 d~~--~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l 312 (437)
|++ +.++.....+|.+.|+|++|+|-+. ||+|+.|++|.+||++.-. ..+..+.+|...|..|.|+|. ...|
T Consensus 256 D~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~---~~lh~~e~H~dev~~V~WSPh~etvL 332 (422)
T KOG0264|consen 256 DTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN---KPLHTFEGHEDEVFQVEWSPHNETVL 332 (422)
T ss_pred EcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc---cCceeccCCCcceEEEEeCCCCCcee
Confidence 999 5666677789999999999999766 9999999999999998544 378889999999999999995 4588
Q ss_pred EEEeCCCcEEEEECCCCcc----------ceEEeeeecccccceEEEEeeCC---EEEEEeCCCcEEEeeCCC
Q 013717 313 FSGACDRSILVWDREDSAN----------HMVVTGALRGHGKAILCLINVAG---LLMSGSADRTVRIWQRGS 372 (437)
Q Consensus 313 ~~~~~dg~i~i~d~~~~~~----------~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~ 372 (437)
++++.|+.+.|||+..-.. +..+.....||...|..++|++. .|++.++|+.+.||+...
T Consensus 333 ASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 333 ASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 9999999999999974221 22344567899999999999987 899999999999998763
No 92
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.6e-29 Score=193.40 Aligned_cols=248 Identities=20% Similarity=0.281 Sum_probs=200.3
Q ss_pred CCcccEEEEEE--eCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEE
Q 013717 140 SSSGSVKSVTF--CDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTG 217 (437)
Q Consensus 140 ~h~~~v~~l~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 217 (437)
.|...|..+.. .+.+|+|++.|++|+|+.++.......+.. +.+|.++|..
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~---------------------------L~Gh~GPVwq 61 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAE---------------------------LTGHSGPVWK 61 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeE---------------------------ecCCCCCeeE
Confidence 58888876654 577899999999999999987765333333 3589999999
Q ss_pred EEeCC----CeEEEEECCCcEEEEECCCcce--EEEeecccccEEEEEEecCCe---EEEEeCCCeEEEecCCCCcccce
Q 013717 218 LAVNN----GLIYSVSWDKSLKIWRASDLRC--LESIKAHEDAVNAVAVSAGGT---VYTGSADRKIRVWAKPFNEKRHA 288 (437)
Q Consensus 218 ~~~~~----~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~---l~~~~~dg~v~iwd~~~~~~~~~ 288 (437)
++|.. .+|++++.||.|.||.-.+++- ......|...|++++|-|.+. |++++.||.|.|.+.+.. ....
T Consensus 62 v~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~-g~w~ 140 (299)
T KOG1332|consen 62 VAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS-GGWT 140 (299)
T ss_pred EeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC-CCcc
Confidence 99954 8999999999999999887743 344558999999999998765 899999999999998755 3334
Q ss_pred eeEEeeCccccEEEEEEccC---C-----------CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC
Q 013717 289 LIATLEKHKSAVNALALSDD---G-----------TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG 354 (437)
Q Consensus 289 ~~~~~~~~~~~i~~~~~~~~---~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 354 (437)
..+....|.-.+++++|.|- | +.|++|+.|..|+||+...+ ...+...+.+|...|..+++.|.
T Consensus 141 t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAwaP~ 218 (299)
T KOG1332|consen 141 TSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAWAPS 218 (299)
T ss_pred chhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc--chhhhhhhhhcchhhhhhhhccc
Confidence 44556689999999999995 5 67999999999999999886 33455558899999998888765
Q ss_pred ------EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717 355 ------LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 355 ------~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
+|++++.||++.||..+.....-....++.....+..+.|+..++ +|+.++.|+.|.+|.-..
T Consensus 219 ~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn-----~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 219 VGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGN-----ILAVSGGDNKVTLWKENV 287 (299)
T ss_pred cCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEecccc-----EEEEecCCcEEEEEEeCC
Confidence 899999999999998774322223444555677899999999986 788889999999998654
No 93
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1.1e-26 Score=214.08 Aligned_cols=249 Identities=13% Similarity=0.253 Sum_probs=181.3
Q ss_pred EecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC---eEEEEecCCeEEEEeCCCCccc-ccccccCccccce
Q 013717 114 ASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG---KIFTAHQDCKIRVWQLTPTKHH-KLKTTLPTVNDRL 188 (437)
Q Consensus 114 ~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~ 188 (437)
|+.. .|++|+.... ..+..+ .+|.+.|.+++|+|+ .|++|+.||+|++||+.++... ....
T Consensus 50 GG~~gvI~L~~~~r~--~~v~~L---~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~--------- 115 (568)
T PTZ00420 50 GGLIGAIRLENQMRK--PPVIKL---KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIK--------- 115 (568)
T ss_pred CCceeEEEeeecCCC--ceEEEE---cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccc---------
Confidence 4445 8999988763 344444 689999999999964 3999999999999999864311 0000
Q ss_pred eeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe
Q 013717 189 LRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT 265 (437)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 265 (437)
.....+.+|...|.+++|+| ..+++++.|+.|+|||+++++.+..+. +...|.+++|+|+|.
T Consensus 116 --------------~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~ 180 (568)
T PTZ00420 116 --------------DPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGN 180 (568)
T ss_pred --------------cceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCC
Confidence 01123457999999999999 356789999999999999998877775 567899999999999
Q ss_pred -EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEE-----EEEccCCCEEEEEeCCC----cEEEEECCCCccceEE
Q 013717 266 -VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNA-----LALSDDGTVLFSGACDR----SILVWDREDSANHMVV 335 (437)
Q Consensus 266 -l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~-----~~~~~~~~~l~~~~~dg----~i~i~d~~~~~~~~~~ 335 (437)
|++++.|+.|++||++... .+..+.+|.+.+.. ..|++++.+|++++.|+ .|+|||++........
T Consensus 181 lLat~s~D~~IrIwD~Rsg~----~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~ 256 (568)
T PTZ00420 181 LLSGTCVGKHMHIIDPRKQE----IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVT 256 (568)
T ss_pred EEEEEecCCEEEEEECCCCc----EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEE
Confidence 8888899999999987653 56677788775433 33568889999988774 7999999864333222
Q ss_pred eeeecccccceEEE-Ee-eCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccC
Q 013717 336 TGALRGHGKAILCL-IN-VAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEE 398 (437)
Q Consensus 336 ~~~~~~~~~~i~~~-~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 398 (437)
..+..+...+..+ .. .+.++++|+.|+.|++|++..+. ...+..+. +..++.+++|.|..
T Consensus 257 -~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 257 -MSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred -EEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccc-cCCCccceEEcccc
Confidence 1233333333222 22 24488999999999999998653 23333333 66789999999975
No 94
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=5.3e-27 Score=216.27 Aligned_cols=200 Identities=14% Similarity=0.228 Sum_probs=151.2
Q ss_pred ecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcc--------eEEEeecccccEEEEEEecCCe--EEEEeCCCeE
Q 013717 209 IEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLR--------CLESIKAHEDAVNAVAVSAGGT--VYTGSADRKI 275 (437)
Q Consensus 209 ~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v 275 (437)
.+|...|.+++|+| .+|++|+.||.|++||+.++. .+..+.+|...|.+++|+|++. +++++.|+.|
T Consensus 71 ~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtI 150 (568)
T PTZ00420 71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFV 150 (568)
T ss_pred cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeE
Confidence 47999999999997 689999999999999997642 3446678999999999999886 5789999999
Q ss_pred EEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEE-----E
Q 013717 276 RVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCL-----I 350 (437)
Q Consensus 276 ~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~-----~ 350 (437)
++||++... ....+. +...|.+++|+|+|.+|++++.|+.|+|||+++++. ...+.+|.+.+.+. .
T Consensus 151 rIWDl~tg~----~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~----i~tl~gH~g~~~s~~v~~~~ 221 (568)
T PTZ00420 151 NIWDIENEK----RAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEI----ASSFHIHDGGKNTKNIWIDG 221 (568)
T ss_pred EEEECCCCc----EEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcE----EEEEecccCCceeEEEEeee
Confidence 999997654 333443 557899999999999999999999999999998763 34456777654221 1
Q ss_pred --eeCCEEEEEeCCC----cEEEeeCCCCCCeeeeeee--cCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717 351 --NVAGLLMSGSADR----TVRIWQRGSDGRFGCLAVL--EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 351 --~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
.++++|++++.|+ +|+|||++.... ++... ..+.+.+... +.++.+ .++++|+.|+.|++|++..
T Consensus 222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~--pl~~~~ld~~~~~L~p~-~D~~tg----~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 222 LGGDDNYILSTGFSKNNMREMKLWDLKNTTS--ALVTMSIDNASAPLIPH-YDESTG----LIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred EcCCCCEEEEEEcCCCCccEEEEEECCCCCC--ceEEEEecCCccceEEe-eeCCCC----CEEEEEECCCeEEEEEccC
Confidence 3445888877764 799999996442 44433 3333333333 334333 4899999999999999976
Q ss_pred CC
Q 013717 423 SC 424 (437)
Q Consensus 423 ~~ 424 (437)
+.
T Consensus 295 ~~ 296 (568)
T PTZ00420 295 GS 296 (568)
T ss_pred Cc
Confidence 53
No 95
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=6.2e-29 Score=194.20 Aligned_cols=266 Identities=20% Similarity=0.276 Sum_probs=218.3
Q ss_pred ccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCC
Q 013717 65 LPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDS 140 (437)
Q Consensus 65 ~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~ 140 (437)
.|..-.+.+.+.||.--+-+-+ ...-+-+| ||.+.|.+...+ .-..|+++.| +-+|||.-++ ..+..+ .
T Consensus 26 tp~g~flisa~kd~~pmlr~g~-tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tg--delhsf----~ 98 (334)
T KOG0278|consen 26 TPDGYFLISASKDGKPMLRNGD-TGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTG--DELHSF----E 98 (334)
T ss_pred CCCceEEEEeccCCCchhccCC-CCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhh--hhhhhh----h
Confidence 3455567788888766554433 35566777 999999999998 5677888899 9999999985 556665 5
Q ss_pred CcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717 141 SSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL 218 (437)
Q Consensus 141 h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 218 (437)
|.--|.+++|+.+. |++|+.+..+|++|++..+... ..+.+|.+.|..+
T Consensus 99 hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App-----------------------------~E~~ghtg~Ir~v 149 (334)
T KOG0278|consen 99 HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP-----------------------------KEISGHTGGIRTV 149 (334)
T ss_pred hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc-----------------------------hhhcCCCCcceeE
Confidence 99999999999654 9999999999999998664221 1224799999999
Q ss_pred EeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCc
Q 013717 219 AVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKH 296 (437)
Q Consensus 219 ~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 296 (437)
.|.. +.+++.+.|++||+||.+++..++++. .+.+|+++.++++|++++-...+.|.+||...- .+++.++ .
T Consensus 150 ~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf----~~lKs~k-~ 223 (334)
T KOG0278|consen 150 LWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF----GLLKSYK-M 223 (334)
T ss_pred EEeccCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccc----cceeecc-C
Confidence 9876 889998999999999999999999997 677899999999999999899999999987543 3444443 4
Q ss_pred cccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCC
Q 013717 297 KSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 374 (437)
...|.+..++|+...+++|++|..++.||..++...... ..+|.++|.|+.|+++ ..++|++||+|++|....++
T Consensus 224 P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~---nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 224 PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY---NKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred ccccccccccCCCceEEecCcceEEEEEeccCCceeeec---ccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 567899999999999999999999999999998754332 4789999999998866 89999999999999988766
Q ss_pred C
Q 013717 375 R 375 (437)
Q Consensus 375 ~ 375 (437)
.
T Consensus 301 ~ 301 (334)
T KOG0278|consen 301 T 301 (334)
T ss_pred c
Confidence 3
No 96
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=6.8e-29 Score=201.23 Aligned_cols=267 Identities=18% Similarity=0.246 Sum_probs=226.1
Q ss_pred cceeeccccccccccCCCceeEEecCCCcce-------eeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCc
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLCI-------NSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTT 128 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~-------~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~ 128 (437)
....|+|....+++.+-||-|.+|+...... ....+ -+.++|.|+.|+ ...||+|+.| .|+||.+.+|
T Consensus 217 EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG- 295 (508)
T KOG0275|consen 217 ECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG- 295 (508)
T ss_pred hheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecc-
Confidence 4779999999999999999999999854322 22223 578999999999 7899999999 9999999995
Q ss_pred eeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccce
Q 013717 129 WTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKK 206 (437)
Q Consensus 129 ~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (437)
.+++.|. ..|+..|+|+.|+.+. +++++.|.++++--+.+++..+.+.
T Consensus 296 -~ClRrFd--rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr--------------------------- 345 (508)
T KOG0275|consen 296 -QCLRRFD--RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFR--------------------------- 345 (508)
T ss_pred -hHHHHhh--hhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhc---------------------------
Confidence 5666663 4799999999999554 9999999999999999998766654
Q ss_pred eeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee--cccccEEEEEEecCCe--EEEEeCCCeEEEecC
Q 013717 207 LWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK--AHEDAVNAVAVSAGGT--VYTGSADRKIRVWAK 280 (437)
Q Consensus 207 ~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~ 280 (437)
+|...|+...|.+ ..+++++.||+|++|+..+.+|+.+++ +..-+|+++-..|.+. ++++...++|.+-++
T Consensus 346 ---GHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~ 422 (508)
T KOG0275|consen 346 ---GHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM 422 (508)
T ss_pred ---CccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec
Confidence 7999999999987 999999999999999999999999987 4566788988888776 999999999999876
Q ss_pred CCCcccceeeEEeeC---ccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--E
Q 013717 281 PFNEKRHALIATLEK---HKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--L 355 (437)
Q Consensus 281 ~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~ 355 (437)
.. +.++.+.. ..+...+...+|.|.++.+.++|+.++.|.+.+++ +...+..|...+..+..++. +
T Consensus 423 qG-----QvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~----LE~tl~VhEkdvIGl~HHPHqNl 493 (508)
T KOG0275|consen 423 QG-----QVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGK----LERTLPVHEKDVIGLTHHPHQNL 493 (508)
T ss_pred cc-----eEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCc----eeeeeecccccccccccCcccch
Confidence 53 35555542 34567778899999999999999999999998887 55666778888988887764 9
Q ss_pred EEEEeCCCcEEEee
Q 013717 356 LMSGSADRTVRIWQ 369 (437)
Q Consensus 356 l~~~~~dg~i~iwd 369 (437)
|++-++||.+++|.
T Consensus 494 lAsYsEDgllKLWk 507 (508)
T KOG0275|consen 494 LASYSEDGLLKLWK 507 (508)
T ss_pred hhhhcccchhhhcC
Confidence 99999999999994
No 97
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=9.6e-27 Score=213.68 Aligned_cols=253 Identities=14% Similarity=0.208 Sum_probs=181.7
Q ss_pred CcccEEEEEEeC--CeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717 141 SSGSVKSVTFCD--GKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL 218 (437)
Q Consensus 141 h~~~v~~l~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 218 (437)
|-..|.....++ ..+++++.+.....|+...+.......... ........+.+|.+.|.++
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G-----------------~~~~~~~~l~GH~~~V~~v 81 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYG-----------------KLASNPPILLGQEGPIIDV 81 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccc-----------------cCCCCCceEeCCCCCEEEE
Confidence 334455444443 348888888888889876543111110000 0001112456899999999
Q ss_pred EeCC---CeEEEEECCCcEEEEECCCc-------ceEEEeecccccEEEEEEecCC-e-EEEEeCCCeEEEecCCCCccc
Q 013717 219 AVNN---GLIYSVSWDKSLKIWRASDL-------RCLESIKAHEDAVNAVAVSAGG-T-VYTGSADRKIRVWAKPFNEKR 286 (437)
Q Consensus 219 ~~~~---~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~-~-l~~~~~dg~v~iwd~~~~~~~ 286 (437)
+|+| ++|++|+.|++|++||+.++ +.+..+.+|...|.+++|+|++ . |++|+.|+.|++||+...
T Consensus 82 ~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg--- 158 (493)
T PTZ00421 82 AFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG--- 158 (493)
T ss_pred EEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC---
Confidence 9987 68999999999999999765 3467788999999999999975 3 999999999999998754
Q ss_pred ceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccce-EEEEee--CCEEEEEe---
Q 013717 287 HALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI-LCLINV--AGLLMSGS--- 360 (437)
Q Consensus 287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i-~~~~~~--~~~l~~~~--- 360 (437)
..+..+..|...|.+++|+|+|.+|++++.|+.|++||+++++. ...+.+|.... ..+.|. ++.+++++
T Consensus 159 -~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~----v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~ 233 (493)
T PTZ00421 159 -KAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI----VSSVEAHASAKSQRCLWAKRKDLIITLGCSK 233 (493)
T ss_pred -eEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE----EEEEecCCCCcceEEEEcCCCCeEEEEecCC
Confidence 35667788999999999999999999999999999999998763 33345565442 233343 34665543
Q ss_pred -CCCcEEEeeCCCCCCeeeeeeecCCC-CCeeEEEEEccCCCCceEEEEEec-CCCcEEEEeeccCCC
Q 013717 361 -ADRTVRIWQRGSDGRFGCLAVLEGHT-KPVKSLTAVTEEGQNGVVSVFSGS-LDGEIRAWQVSVSCP 425 (437)
Q Consensus 361 -~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~l~s~~-~dg~i~iw~~~~~~~ 425 (437)
.|+.|++||++... .++.....+. ..+....|++++. +|++++ .||.|++||+..+++
T Consensus 234 s~Dr~VklWDlr~~~--~p~~~~~~d~~~~~~~~~~d~d~~-----~L~lggkgDg~Iriwdl~~~~~ 294 (493)
T PTZ00421 234 SQQRQIMLWDTRKMA--SPYSTVDLDQSSALFIPFFDEDTN-----LLYIGSKGEGNIRCFELMNERL 294 (493)
T ss_pred CCCCeEEEEeCCCCC--CceeEeccCCCCceEEEEEcCCCC-----EEEEEEeCCCeEEEEEeeCCce
Confidence 47899999998755 2344443333 3455566777764 566666 599999999998764
No 98
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1.8e-26 Score=178.03 Aligned_cols=278 Identities=19% Similarity=0.255 Sum_probs=215.3
Q ss_pred cceeeccccccccccCCCceeEEecC--------------CCcc-eeeeecCccCCeEEEEee--CCEEEEEecC-eEEE
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSA--------------SHLC-INSVQLGHKLPIGCIAVH--HNFLYAASSH-EINV 121 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~--------------~~~~-~~~~~~~h~~~V~~l~~~--~~~l~s~~~d-~v~v 121 (437)
-++.|+|...+.+.++...++++-.. .+.. .+.+...|.+.|+|.+|+ |+++++|+.| +|++
T Consensus 36 rav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~ 115 (350)
T KOG0641|consen 36 RAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKV 115 (350)
T ss_pred eeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEE
Confidence 47789999999998888888776543 1111 122222899999999999 9999999999 9999
Q ss_pred EeCCCCceeeeeccccCCCCcccEEEEEEeCC-----e-EEEEe-cCCeEEEEeCCCCcccccccccCccccceeeecCC
Q 013717 122 YDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG-----K-IFTAH-QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLP 194 (437)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----~-l~s~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (437)
.-.+.........-..+.-|.+.|..++|.++ . |++++ .|..|.+-|...++....+
T Consensus 116 l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~---------------- 179 (350)
T KOG0641|consen 116 LPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL---------------- 179 (350)
T ss_pred EecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee----------------
Confidence 87765433333222222459999999999733 2 55543 4667777777776543333
Q ss_pred CCeeEEeeccceeeecCCCcEEEE-EeCCCeEEEEECCCcEEEEECCCcceEEEeec-------ccccEEEEEEecCCe-
Q 013717 195 NSYVTVRRHKKKLWIEHGDAVTGL-AVNNGLIYSVSWDKSLKIWRASDLRCLESIKA-------HEDAVNAVAVSAGGT- 265 (437)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~~- 265 (437)
.+|.+.|.++ .|+.-++++|+.|.+|++||++-..++.++.. ....|.++++.|.|+
T Consensus 180 --------------sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrl 245 (350)
T KOG0641|consen 180 --------------SGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRL 245 (350)
T ss_pred --------------cCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcce
Confidence 3799999887 67889999999999999999998888887741 236799999999999
Q ss_pred EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccc
Q 013717 266 VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKA 345 (437)
Q Consensus 266 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 345 (437)
|++|-.|....+||++.+. .++.+..|...|.++.|+|.-.|+++++.|..|++-|+...-...........|...
T Consensus 246 l~sg~~dssc~lydirg~r----~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk 321 (350)
T KOG0641|consen 246 LASGHADSSCMLYDIRGGR----MIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDK 321 (350)
T ss_pred eeeccCCCceEEEEeeCCc----eeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCc
Confidence 8999999999999998664 788999999999999999999999999999999999997542222222234568888
Q ss_pred eEEEEeeCC--EEEEEeCCCcEEEeeCC
Q 013717 346 ILCLINVAG--LLMSGSADRTVRIWQRG 371 (437)
Q Consensus 346 i~~~~~~~~--~l~~~~~dg~i~iwd~~ 371 (437)
+..+.|+++ -+++.+.|.++.+|-+.
T Consensus 322 ~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 322 AIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eEEEEecCccceeeeccCcceEEEeccC
Confidence 888999887 78889999999999764
No 99
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=3.2e-27 Score=202.07 Aligned_cols=284 Identities=15% Similarity=0.282 Sum_probs=223.6
Q ss_pred eeeeecCccCCeEEEEee--CCEEEEEecCeEEEEeCCCCce-eeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeE
Q 013717 90 INSVQLGHKLPIGCIAVH--HNFLYAASSHEINVYDRTGTTW-TSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKI 164 (437)
Q Consensus 90 ~~~~~~~h~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i 164 (437)
+.+.++.|..-|.+++++ .++++||+.+.|+|||+..... ..+..+.. ......|+++...+++ |++|+.-.++
T Consensus 411 rq~~tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdc-l~rdnyiRSckL~pdgrtLivGGeastl 489 (705)
T KOG0639|consen 411 RQINTLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDC-LNRDNYIRSCKLLPDGRTLIVGGEASTL 489 (705)
T ss_pred HhhhhhccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccc-cCcccceeeeEecCCCceEEecccccee
Confidence 345566899999999999 8999999999999999976421 22222211 1245678888888765 9999999999
Q ss_pred EEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCc
Q 013717 165 RVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDL 242 (437)
Q Consensus 165 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~ 242 (437)
.|||+.......... + ......+.+++.++ +..+++..||.|.|||+.+.
T Consensus 490 siWDLAapTprikae-l---------------------------tssapaCyALa~spDakvcFsccsdGnI~vwDLhnq 541 (705)
T KOG0639|consen 490 SIWDLAAPTPRIKAE-L---------------------------TSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ 541 (705)
T ss_pred eeeeccCCCcchhhh-c---------------------------CCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc
Confidence 999998654221111 1 01223566778888 88999999999999999999
Q ss_pred ceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcE
Q 013717 243 RCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSI 321 (437)
Q Consensus 243 ~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 321 (437)
..++.+++|.+.+.||.+++||. |.+|+-|++|+.||++..... .. ....+.|.++..+|++.++++|-+++.+
T Consensus 542 ~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql----qq-hdF~SQIfSLg~cP~~dWlavGMens~v 616 (705)
T KOG0639|consen 542 TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL----QQ-HDFSSQIFSLGYCPTGDWLAVGMENSNV 616 (705)
T ss_pred eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh----hh-hhhhhhheecccCCCccceeeecccCcE
Confidence 99999999999999999999999 999999999999999865421 11 1245789999999999999999999999
Q ss_pred EEEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCC
Q 013717 322 LVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEG 399 (437)
Q Consensus 322 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 399 (437)
.|......+. ..+.-|...|+++.|. |.++++.+.|+.+..|...-+. .+...+ ....|.++..+.++
T Consensus 617 evlh~skp~k-----yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGa---siFqsk-E~SsVlsCDIS~dd- 686 (705)
T KOG0639|consen 617 EVLHTSKPEK-----YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA---SIFQSK-ESSSVLSCDISFDD- 686 (705)
T ss_pred EEEecCCccc-----eeecccccEEEEEEecccCceeeecCchhhhhhccCcccc---ceeecc-ccCcceeeeeccCc-
Confidence 9988765432 2245588889887765 7799999999999999988766 444444 45789999999887
Q ss_pred CCceEEEEEecCCCcEEEEeec
Q 013717 400 QNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 400 ~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
+|++||+.|....+|.+.
T Consensus 687 ----kyIVTGSGdkkATVYeV~ 704 (705)
T KOG0639|consen 687 ----KYIVTGSGDKKATVYEVI 704 (705)
T ss_pred ----eEEEecCCCcceEEEEEe
Confidence 599999999999999874
No 100
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=9.3e-29 Score=203.10 Aligned_cols=268 Identities=15% Similarity=0.241 Sum_probs=211.6
Q ss_pred cceeecccc-ccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccc
Q 013717 60 LSLQTLPSV-PSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFN 136 (437)
Q Consensus 60 ~~~~~~~~~-~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~ 136 (437)
..+.-+|.. ..+++++.||.+.+|++.. ..+..++ .|.+.|..|++....++++++| +|+.|.++.. ...++
T Consensus 70 ~~lakhp~~ls~~aSGs~DG~VkiWnlsq-R~~~~~f~AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~---p~~ti- 144 (433)
T KOG0268|consen 70 SCLAKHPNKLSTVASGSCDGEVKIWNLSQ-RECIRTFKAHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGP---PLHTI- 144 (433)
T ss_pred chhhcCcchhhhhhccccCceEEEEehhh-hhhhheeecccCceeeEEecccceEEecCCcceeeeeccCC---cceee-
Confidence 355666765 7899999999999999977 5666777 9999999999998888888888 9999998873 34443
Q ss_pred cCCCCcccEEEEEEe--CCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCc
Q 013717 137 DNDSSSGSVKSVTFC--DGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDA 214 (437)
Q Consensus 137 ~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (437)
.....+..|.-+ .+.++|+|. .|.|||.........+. --...
T Consensus 145 ---lg~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~sms------------------------------wG~Dt 189 (433)
T KOG0268|consen 145 ---LGKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMS------------------------------WGADS 189 (433)
T ss_pred ---eccccccccccccccccccccCc--eeeecccccCCccceee------------------------------cCCCc
Confidence 134556666665 333888876 49999987554333332 24567
Q ss_pred EEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceee
Q 013717 215 VTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALI 290 (437)
Q Consensus 215 v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~ 290 (437)
|.++.|+| ..|++++.|+.|.+||+++..+++.+. ..-.-+.|+|+|.+. +++|..|..+..||++.-. .++
T Consensus 190 i~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~---~p~ 265 (433)
T KOG0268|consen 190 ISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS---RPL 265 (433)
T ss_pred eeEEecCCCcchheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhc---ccc
Confidence 89999999 889999999999999999998887765 344567899999777 9999999999999987544 467
Q ss_pred EEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEe
Q 013717 291 ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIW 368 (437)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iw 368 (437)
....+|.+.|.+++|+|.|+.|++|+.|.+|+||..+.+...-.... .-...|.|+.|+-+ ++++|+.|+.|++|
T Consensus 266 ~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht---kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlW 342 (433)
T KOG0268|consen 266 NVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT---KRMQHVFCVKYSMDSKYIISGSDDGNVRLW 342 (433)
T ss_pred hhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH---hhhheeeEEEEeccccEEEecCCCcceeee
Confidence 77889999999999999999999999999999999987654332211 12345778877644 99999999999999
Q ss_pred eCCCCC
Q 013717 369 QRGSDG 374 (437)
Q Consensus 369 d~~~~~ 374 (437)
.....+
T Consensus 343 ka~Ase 348 (433)
T KOG0268|consen 343 KAKASE 348 (433)
T ss_pred ecchhh
Confidence 876544
No 101
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.2e-28 Score=188.44 Aligned_cols=251 Identities=19% Similarity=0.288 Sum_probs=195.8
Q ss_pred CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCce-eeeeccccCCCCcccEEEEEEe-CCe---EEEEecCCeEEEE
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTW-TSINTFNDNDSSSGSVKSVTFC-DGK---IFTAHQDCKIRVW 167 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~-~~~~~~~~~~~h~~~v~~l~~~-~~~---l~s~~~dg~i~iw 167 (437)
.|.+.|..+..+ |..|||++.| +|+|+....... +.+.++ .+|.++|..++|. |.. |++++.||.|.||
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L---~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAEL---TGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEe---cCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 899999988777 9999999999 999999987533 555555 7999999999997 433 9999999999999
Q ss_pred eCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC----CeEEEEECCCcEEEEECCCc-
Q 013717 168 QLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN----GLIYSVSWDKSLKIWRASDL- 242 (437)
Q Consensus 168 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~- 242 (437)
.-.+++-.+... +..|...|++++|.| -.|++++.||.|.|++.+..
T Consensus 86 ke~~g~w~k~~e----------------------------~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g 137 (299)
T KOG1332|consen 86 KEENGRWTKAYE----------------------------HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSG 137 (299)
T ss_pred ecCCCchhhhhh----------------------------hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCC
Confidence 988875333222 235999999999988 67889999999999988654
Q ss_pred --ceEEEeecccccEEEEEEecC---C-----------e-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEE
Q 013717 243 --RCLESIKAHEDAVNAVAVSAG---G-----------T-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALAL 305 (437)
Q Consensus 243 --~~~~~~~~~~~~v~~~~~~~~---~-----------~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 305 (437)
........|.-.|+++.|.|. | + |++|+.|..|+||+...+ .+.....+++|..-|+.++|
T Consensus 138 ~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~--~w~~e~~l~~H~dwVRDVAw 215 (299)
T KOG1332|consen 138 GWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD--SWKLERTLEGHKDWVRDVAW 215 (299)
T ss_pred CccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc--chhhhhhhhhcchhhhhhhh
Confidence 122333478999999999885 3 3 999999999999998754 55666678999999999999
Q ss_pred ccCC----CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEE--EeeCCEEEEEeCCCcEEEeeCCCCCCeeee
Q 013717 306 SDDG----TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCL--INVAGLLMSGSADRTVRIWQRGSDGRFGCL 379 (437)
Q Consensus 306 ~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 379 (437)
.|.- .+|++++.||++.||..+........ ..+......+..+ ++.+++|++++.|+.|.+|.-....++.++
T Consensus 216 aP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~-tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v 294 (299)
T KOG1332|consen 216 APSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKK-TLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWEEV 294 (299)
T ss_pred ccccCCCceeeEEecCCCcEEEEEecCccCcccc-cccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEEEc
Confidence 9953 48999999999999988743222221 1122234445544 455889999999999999987766555554
Q ss_pred e
Q 013717 380 A 380 (437)
Q Consensus 380 ~ 380 (437)
.
T Consensus 295 ~ 295 (299)
T KOG1332|consen 295 G 295 (299)
T ss_pred c
Confidence 3
No 102
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=5.7e-27 Score=184.42 Aligned_cols=261 Identities=19% Similarity=0.192 Sum_probs=212.1
Q ss_pred eccccceeeccccccccccCCCceeEEecCCCcceeeeec--CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCce
Q 013717 56 LQSNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL--GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTW 129 (437)
Q Consensus 56 ~~~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~--~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~ 129 (437)
.+...++...-....+++++.|+++.+|++.........- ||.+.|-.++|+ .+++++++.| .|++||...++
T Consensus 20 ~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k- 98 (313)
T KOG1407|consen 20 VQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGK- 98 (313)
T ss_pred hhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCc-
Confidence 4455677888889999999999999999998764433333 999999999998 8999999999 99999999854
Q ss_pred eeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeecccee
Q 013717 130 TSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKL 207 (437)
Q Consensus 130 ~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (437)
+.... . ..+.=.-+.|+|+. ++.++.|..|.+.|.++.+......
T Consensus 99 -~~~~i---~-~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~---------------------------- 145 (313)
T KOG1407|consen 99 -CTARI---E-TKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ---------------------------- 145 (313)
T ss_pred -EEEEe---e-ccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc----------------------------
Confidence 34333 1 23333456677544 9999999999999998776444332
Q ss_pred eecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCc
Q 013717 208 WIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNE 284 (437)
Q Consensus 208 ~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~ 284 (437)
....+..++|+. ++++.....|+|.|......+++..++.|.....||.|+|+|+ ||+|+.|-.+.+||+..
T Consensus 146 ---~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~E-- 220 (313)
T KOG1407|consen 146 ---FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDE-- 220 (313)
T ss_pred ---ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhH--
Confidence 344667777765 6777667779999999999999999999999999999999999 99999999999998753
Q ss_pred ccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCC
Q 013717 285 KRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSAD 362 (437)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~d 362 (437)
..+++.+..+.-+|..+.|+.||++||+|++|..|-|=+++++.....+. +.++...++|+|+ +||-+..|
T Consensus 221 --LiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-----~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 221 --LICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-----CEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred --hhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee-----ccCCceeEEecCCCceeeEEecC
Confidence 34677888899999999999999999999999999999999998665543 5778889999988 66666554
No 103
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=1.5e-27 Score=211.59 Aligned_cols=253 Identities=19% Similarity=0.283 Sum_probs=209.5
Q ss_pred cccccCCCceeEEecCCC-cceeeeec-CccCCeEE-EEee---CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCc
Q 013717 70 SLQKLSPDETINFSSASH-LCINSVQL-GHKLPIGC-IAVH---HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSS 142 (437)
Q Consensus 70 ~~~s~s~dg~i~~~~~~~-~~~~~~~~-~h~~~V~~-l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~ 142 (437)
.+.+.|.||++++|+... .......+ +|.+-|.+ ++|. +..|++|+.| .|.+|.... ...+..+ .+|+
T Consensus 27 ~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~--~~P~~~L---kgH~ 101 (745)
T KOG0301|consen 27 CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ--AEPLYTL---KGHK 101 (745)
T ss_pred EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCC--CCchhhh---hccc
Confidence 688899999999999844 44444666 88888888 7776 5679999999 999999988 4555565 7899
Q ss_pred ccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717 143 GSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN 221 (437)
Q Consensus 143 ~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 221 (437)
..|.++....+. +++|+.|.++++|....-.. .+.+|...|++++.-
T Consensus 102 snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~--------------------------------~l~gH~asVWAv~~l 149 (745)
T KOG0301|consen 102 SNVCSLSIGEDGTLISGSWDSTAKVWRIGELVY--------------------------------SLQGHTASVWAVASL 149 (745)
T ss_pred cceeeeecCCcCceEecccccceEEecchhhhc--------------------------------ccCCcchheeeeeec
Confidence 999999977555 89999999999998764321 124799999999988
Q ss_pred C-CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccE
Q 013717 222 N-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAV 300 (437)
Q Consensus 222 ~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i 300 (437)
| +.+++|+.|.+|++|.- ++.++++.+|.+-|..+++-+++.|++++.||.|++|++.. ..+.++.+|.+-+
T Consensus 150 ~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~g-----e~l~~~~ghtn~v 222 (745)
T KOG0301|consen 150 PENTYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDG-----EVLLEMHGHTNFV 222 (745)
T ss_pred CCCcEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccC-----ceeeeeeccceEE
Confidence 8 99999999999999985 77899999999999999999998999999999999999843 4788889999999
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee-CCEEEEEeCCCcEEEeeCCC
Q 013717 301 NALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV-AGLLMSGSADRTVRIWQRGS 372 (437)
Q Consensus 301 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~dg~i~iwd~~~ 372 (437)
.++...+++..++++++|++++||+.. + +.+.+.-....|++...- ..-|++|+.||.||||....
T Consensus 223 Ysis~~~~~~~Ivs~gEDrtlriW~~~--e----~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 223 YSISMALSDGLIVSTGEDRTLRIWKKD--E----CVQVITLPTTSIWSAKVLLNGDIVVGGSDGRVRVFTVDK 289 (745)
T ss_pred EEEEecCCCCeEEEecCCceEEEeecC--c----eEEEEecCccceEEEEEeeCCCEEEeccCceEEEEEecc
Confidence 999988888899999999999999986 2 222233234466666654 34789999999999998663
No 104
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.8e-27 Score=207.92 Aligned_cols=264 Identities=20% Similarity=0.263 Sum_probs=217.8
Q ss_pred ccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCC-Cc
Q 013717 67 SVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDS-SS 142 (437)
Q Consensus 67 ~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~-h~ 142 (437)
+...++.++....+.+|+..........--+...|+++.|+ |++|++|..+ .|.|||... .+.+..+ .+ |.
T Consensus 186 ss~n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~--~k~~~~~---~~~h~ 260 (484)
T KOG0305|consen 186 SSANVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE--QKKTRTL---RGSHA 260 (484)
T ss_pred ccCCeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhh--ccccccc---cCCcC
Confidence 44556668888899999997654222221338999999999 9999999999 999999988 4455555 45 99
Q ss_pred ccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC
Q 013717 143 GSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN 222 (437)
Q Consensus 143 ~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 222 (437)
..|-+++|....+.+|+.|+.|..+|++..+..... +.+|...|..++|++
T Consensus 261 ~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~-----------------------------~~~H~qeVCgLkws~ 311 (484)
T KOG0305|consen 261 SRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVST-----------------------------LQGHRQEVCGLKWSP 311 (484)
T ss_pred ceeEEEeccCceEEEecCCCcEEEEEEecchhhhhh-----------------------------hhcccceeeeeEECC
Confidence 999999999888999999999999999977644331 246999999999998
Q ss_pred --CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe--EEEEe--CCCeEEEecCCCCcccceeeEEeeCc
Q 013717 223 --GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT--VYTGS--ADRKIRVWAKPFNEKRHALIATLEKH 296 (437)
Q Consensus 223 --~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~ 296 (437)
.++++|+.|+.+.|||....+.+..+..|...|.+++|+|-.. ||+|+ .|+.|++||..++. .+.... .
T Consensus 312 d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~----~i~~vd-t 386 (484)
T KOG0305|consen 312 DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA----RIDSVD-T 386 (484)
T ss_pred CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc----Eecccc-c
Confidence 9999999999999999988888999999999999999999655 77765 59999999887543 444433 5
Q ss_pred cccEEEEEEccCCCEEEEE--eCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCC
Q 013717 297 KSAVNALALSDDGTVLFSG--ACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGS 372 (437)
Q Consensus 297 ~~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~ 372 (437)
.+.|..|.|++..+.|+++ ..++.|.||+..+.+ ....+.+|...|..++.+++ .+++|+.|.++++|++-.
T Consensus 387 gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~----~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 387 GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK----LVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc----eeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 7899999999998877764 457899999997644 66678899999998887765 999999999999999876
Q ss_pred C
Q 013717 373 D 373 (437)
Q Consensus 373 ~ 373 (437)
.
T Consensus 463 ~ 463 (484)
T KOG0305|consen 463 E 463 (484)
T ss_pred C
Confidence 4
No 105
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.5e-28 Score=218.14 Aligned_cols=286 Identities=19% Similarity=0.269 Sum_probs=217.6
Q ss_pred CCeEEEEee--CCEEEEEecCeEEEEeCCCCce--eeeeccccCCCCcccEEEEEEe---CCeEEEEecCCeEEEEeCCC
Q 013717 99 LPIGCIAVH--HNFLYAASSHEINVYDRTGTTW--TSINTFNDNDSSSGSVKSVTFC---DGKIFTAHQDCKIRVWQLTP 171 (437)
Q Consensus 99 ~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~--~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~ 171 (437)
....+|..+ -..++.++...++||.++.... .+...+.....-...+..+.|. .+.|++++..|.|.+||+..
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk 119 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK 119 (839)
T ss_pred cccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence 344555555 5667777777778887765321 1111111111122344556666 33499999999999999986
Q ss_pred CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEe
Q 013717 172 TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESI 248 (437)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~ 248 (437)
....+.+ ..|..|+..++++.|+. .+|++|+.||+|++||++..+...++
T Consensus 120 ~~rnk~l---------------------------~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~ 172 (839)
T KOG0269|consen 120 SIRNKLL---------------------------TVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF 172 (839)
T ss_pred cccchhh---------------------------hHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc
Confidence 3211111 12346999999999987 99999999999999999999999999
Q ss_pred ecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEEC
Q 013717 249 KAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDR 326 (437)
Q Consensus 249 ~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (437)
.+....|..++|+|... |+++...|.+++||++... .+...+.+|.++|.++.|+|++.+||+|+.|+.|+|||+
T Consensus 173 ~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~---r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~ 249 (839)
T KOG0269|consen 173 RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD---RCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDM 249 (839)
T ss_pred cccchhhhceeeccCCCceEEEecCCceEEEeeccCch---hHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEec
Confidence 88999999999998543 9999999999999998654 456678899999999999999999999999999999999
Q ss_pred CCCccceEEeeeecccccceEEEEeeCC---EEEEEeC--CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCC
Q 013717 327 EDSANHMVVTGALRGHGKAILCLINVAG---LLMSGSA--DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQN 401 (437)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 401 (437)
.+.+...... + ....++.++.|.|. .|++++. |-.|+|||++.. +.+..++..|...++.++|...+.
T Consensus 250 t~~~~~~~~t--I-nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP--YIP~~t~~eH~~~vt~i~W~~~d~-- 322 (839)
T KOG0269|consen 250 TDSRAKPKHT--I-NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP--YIPYATFLEHTDSVTGIAWDSGDR-- 322 (839)
T ss_pred cCCCccceeE--E-eecceeeeeeeccCccchhhhhhccccceEEEEeeccc--cccceeeeccCccccceeccCCCc--
Confidence 8754332221 1 13456788888876 7887765 778999999974 478889999999999999987444
Q ss_pred ceEEEEEecCCCcEEEEeeccC
Q 013717 402 GVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 402 ~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
..+.+++.||.|..-.++..
T Consensus 323 --~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 323 --INLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred --eeeEeecCccHHHHhhhhcc
Confidence 38999999999877665544
No 106
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=5.3e-27 Score=218.69 Aligned_cols=302 Identities=20% Similarity=0.262 Sum_probs=228.3
Q ss_pred CccCCeEEEEee--CCEEEEEe--cC-eEEEEeCCCCc-------eeeeeccccCCCCcccEEEEEEeCCe--EEEEecC
Q 013717 96 GHKLPIGCIAVH--HNFLYAAS--SH-EINVYDRTGTT-------WTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQD 161 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~--~d-~v~vwd~~~~~-------~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d 161 (437)
.+...|.+++.+ +..++||+ .| .++||+.+.-. ......+.....|.+.|+|+.|++|+ |++|+.|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 345678999998 89999999 77 88899986510 01122223336799999999999876 9999999
Q ss_pred CeEEEEeCCCCcccccccccCccccceeeecC-CCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEE
Q 013717 162 CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFML-PNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWR 238 (437)
Q Consensus 162 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd 238 (437)
+.|.+|+......... +.. ........-....++.+|...|.+++|+| .++++++.|++|.|||
T Consensus 91 ~~v~iW~~~~~~~~~~-------------fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn 157 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTV-------------FGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWN 157 (942)
T ss_pred ceEEEeeecccCCccc-------------ccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEc
Confidence 9999999874100000 000 00111122234466788999999999998 9999999999999999
Q ss_pred CCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeC------ccccEEEEEEccCCCE
Q 013717 239 ASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEK------HKSAVNALALSDDGTV 311 (437)
Q Consensus 239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~ 311 (437)
..+++.+..+++|...|..+.|.|-|+ |++-+.|++|++|++.. +...+.+.+ ....+..+.|+|||++
T Consensus 158 ~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d----w~i~k~It~pf~~~~~~T~f~RlSWSPDG~~ 233 (942)
T KOG0973|consen 158 AKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD----WGIEKSITKPFEESPLTTFFLRLSWSPDGHH 233 (942)
T ss_pred cccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEccc----ceeeEeeccchhhCCCcceeeecccCCCcCe
Confidence 999999999999999999999999999 99999999999997542 233333332 2346789999999999
Q ss_pred EEEEeC----CCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-------------------EEEEEeCCCcEEEe
Q 013717 312 LFSGAC----DRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-------------------LLMSGSADRTVRIW 368 (437)
Q Consensus 312 l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------------~l~~~~~dg~i~iw 368 (437)
|++... -.++.|.+-.+ +.....+-||..++.++.|++. .+|+|+.|+.|-||
T Consensus 234 las~nA~n~~~~~~~IieR~t----Wk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW 309 (942)
T KOG0973|consen 234 LASPNAVNGGKSTIAIIERGT----WKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVW 309 (942)
T ss_pred ecchhhccCCcceeEEEecCC----ceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEE
Confidence 998643 34577777533 3355567889999999998742 57899999999999
Q ss_pred eCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 369 QRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 369 d~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
.....++.-.+. +-....|.+++|+|+|- .|+.+|.||+|.+..++.++.
T Consensus 310 ~T~~~RPl~vi~--~lf~~SI~DmsWspdG~-----~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 310 NTALPRPLFVIH--NLFNKSIVDMSWSPDGF-----SLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred ecCCCCchhhhh--hhhcCceeeeeEcCCCC-----eEEEEecCCeEEEEEcchHHh
Confidence 987655322222 22356899999999994 699999999999999987653
No 107
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.3e-27 Score=201.36 Aligned_cols=269 Identities=18% Similarity=0.291 Sum_probs=213.0
Q ss_pred ccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeec
Q 013717 59 NLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINT 134 (437)
Q Consensus 59 ~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~ 134 (437)
..++.|.|..|.-..+...-.+.+++... ......+ -..+.|+++.|- |++||.|+.. .|+|||.++ ...++.
T Consensus 29 vssl~fsp~~P~d~aVt~S~rvqly~~~~-~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~--r~iLR~ 105 (487)
T KOG0310|consen 29 VSSLCFSPKHPYDFAVTSSVRVQLYSSVT-RSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS--RVILRQ 105 (487)
T ss_pred ceeEecCCCCCCceEEecccEEEEEecch-hhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc--HHHHHH
Confidence 35788888888766677777788887755 3344445 788999999998 9999999888 999999666 334444
Q ss_pred cccCCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC
Q 013717 135 FNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH 211 (437)
Q Consensus 135 ~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (437)
+ .+|+.+|..+.|++.. +++|+.|+.+++||+.+..... .+.+|
T Consensus 106 ~---~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~------------------------------~l~~h 152 (487)
T KOG0310|consen 106 L---YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQA------------------------------ELSGH 152 (487)
T ss_pred H---hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEE------------------------------EecCC
Confidence 4 7899999999999543 8999999999999999875311 12479
Q ss_pred CCcEEEEEeCC---CeEEEEECCCcEEEEECCCc-ceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccc
Q 013717 212 GDAVTGLAVNN---GLIYSVSWDKSLKIWRASDL-RCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRH 287 (437)
Q Consensus 212 ~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~ 287 (437)
++.|.|.+++| .++++|+.||.|++||++.. ..+.++. |..+|..+.+-|.|.+++......|++||+..+.
T Consensus 153 tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~--- 228 (487)
T KOG0310|consen 153 TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG--- 228 (487)
T ss_pred cceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc---
Confidence 99999999998 58999999999999999887 6666665 9999999999999884444456789999987554
Q ss_pred eeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC--CEEEEEeCCCcE
Q 013717 288 ALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA--GLLMSGSADRTV 365 (437)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~i 365 (437)
+.+..+..|...|+|+++..++..|++|+.|+.|++||+.+-+ ....+. ..++|.+++.++ +.++.|..+|.+
T Consensus 229 qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~K----vv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv 303 (487)
T KOG0310|consen 229 QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYK----VVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLV 303 (487)
T ss_pred eehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceE----EEEeee-cccceeeEEecCCCceEEEeccccee
Confidence 3455555699999999999999999999999999999976544 333332 467888887765 599999999988
Q ss_pred EEeeCCC
Q 013717 366 RIWQRGS 372 (437)
Q Consensus 366 ~iwd~~~ 372 (437)
.+=+...
T Consensus 304 ~~rr~~~ 310 (487)
T KOG0310|consen 304 SIRRREV 310 (487)
T ss_pred eeehhhc
Confidence 7765443
No 108
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=8e-27 Score=187.34 Aligned_cols=254 Identities=14% Similarity=0.138 Sum_probs=196.6
Q ss_pred cccceeecc-ccccccccCCCceeEEecCCCcceee-eec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceee
Q 013717 58 SNLSLQTLP-SVPSLQKLSPDETINFSSASHLCINS-VQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTS 131 (437)
Q Consensus 58 ~~~~~~~~~-~~~~~~s~s~dg~i~~~~~~~~~~~~-~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~ 131 (437)
+...+.|+| ....++..|-||++++|+++...... ... .|.++|.+++|+ |..+++|+.| .+++||+.++....
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~ 108 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQ 108 (347)
T ss_pred chheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeee
Confidence 345788999 44556688999999999997743333 333 999999999999 9999999999 99999999974444
Q ss_pred eeccccCCCCcccEEEEEEeCCe----EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeecccee
Q 013717 132 INTFNDNDSSSGSVKSVTFCDGK----IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKL 207 (437)
Q Consensus 132 ~~~~~~~~~h~~~v~~l~~~~~~----l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (437)
+ ..|.++|.++.|-+.. |+||+.|.+|++||.+.......+.
T Consensus 109 v------~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~---------------------------- 154 (347)
T KOG0647|consen 109 V------AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ---------------------------- 154 (347)
T ss_pred e------eecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee----------------------------
Confidence 3 3599999999998554 7999999999999999765444433
Q ss_pred eecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEe--ecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCc
Q 013717 208 WIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESI--KAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNE 284 (437)
Q Consensus 208 ~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~ 284 (437)
-.+.++++..-..+++.+..+..|.+|+++.+...... ...+-.+.|++..++.. .+.|+-+|.+.+..++...
T Consensus 155 ---LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~ 231 (347)
T KOG0647|consen 155 ---LPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPN 231 (347)
T ss_pred ---ccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCC
Confidence 44678888887789999999999999999776432221 12345689999998888 9999999999999886532
Q ss_pred ccceeeEEeeCcc---------ccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC
Q 013717 285 KRHALIATLEKHK---------SAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG 354 (437)
Q Consensus 285 ~~~~~~~~~~~~~---------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 354 (437)
. +.-..|+.|. -.|++|+|+|....|++++.||+..+||-.... .+.....|..+|.|..|+.+
T Consensus 232 ~--~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~----kLk~s~~~~qpItcc~fn~~ 304 (347)
T KOG0647|consen 232 P--KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDART----KLKTSETHPQPITCCSFNRN 304 (347)
T ss_pred c--cCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhh----hhhccCcCCCccceeEecCC
Confidence 2 2223344443 257899999998899999999999999976543 23334668889998888754
No 109
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=1.4e-26 Score=186.56 Aligned_cols=260 Identities=17% Similarity=0.182 Sum_probs=204.8
Q ss_pred cceeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee-CCEEEEEecC-eEEEEeCCCCceeeeecccc
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH-HNFLYAASSH-EINVYDRTGTTWTSINTFND 137 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~ 137 (437)
.++.|.|+...++..+-||.+++++.... .+...+.|..++.+++|. ...+++|+-| .|+.+|++++....+.
T Consensus 17 S~v~f~~~~~~LLvssWDgslrlYdv~~~-~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~ig---- 91 (323)
T KOG1036|consen 17 SSVKFSPSSSDLLVSSWDGSLRLYDVPAN-SLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIG---- 91 (323)
T ss_pred eeEEEcCcCCcEEEEeccCcEEEEeccch-hhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeec----
Confidence 46788888888998999999999999876 555555999999999999 7899999999 9999999997544443
Q ss_pred CCCCcccEEEEEEe--CCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcE
Q 013717 138 NDSSSGSVKSVTFC--DGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAV 215 (437)
Q Consensus 138 ~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 215 (437)
.|..+|.||.++ .+.+++|+.|++|++||.+........ .....|
T Consensus 92 --th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~-------------------------------d~~kkV 138 (323)
T KOG1036|consen 92 --THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF-------------------------------DQGKKV 138 (323)
T ss_pred --cCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccc-------------------------------ccCceE
Confidence 499999999999 455999999999999999863322211 244589
Q ss_pred EEEEeCCCeEEEEECCCcEEEEECCCcceEEEee--cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEE
Q 013717 216 TGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIK--AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIAT 292 (437)
Q Consensus 216 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~ 292 (437)
.++....+.|++|+.|..+.+||+++.......+ ..+-.+.|+++.|++. +++++-||.|.+=.++...........
T Consensus 139 y~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkya 218 (323)
T KOG1036|consen 139 YCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYA 218 (323)
T ss_pred EEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhcee
Confidence 9999999999999999999999999876544332 3456799999999887 999999999988766544332233334
Q ss_pred eeCcc---------ccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeC
Q 013717 293 LEKHK---------SAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSA 361 (437)
Q Consensus 293 ~~~~~---------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~ 361 (437)
|+.|. -+|++|+|+|-...|++|+.||.|.+||+...+.... +......|..++++ |..||+++.
T Consensus 219 FkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q----~~~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 219 FKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQ----LAKYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhh----ccCCCCceEEEEeccCCCeEEEEec
Confidence 44443 3789999999988999999999999999987654333 33445667777666 558888864
No 110
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.7e-27 Score=192.56 Aligned_cols=277 Identities=19% Similarity=0.303 Sum_probs=225.5
Q ss_pred eeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeC------CCC----
Q 013717 62 LQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDR------TGT---- 127 (437)
Q Consensus 62 ~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~------~~~---- 127 (437)
+......+.+.+.+.|++..+|.++. ..|+..+ ||.+.|+|+.|+ +.++++++.| +..||.. ...
T Consensus 154 Vaa~~tqpi~gtASADhTA~iWs~Es-g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~ 232 (481)
T KOG0300|consen 154 VAADSTQPICGTASADHTARIWSLES-GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPS 232 (481)
T ss_pred ehhhcCCcceeecccccceeEEeecc-ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCC
Confidence 34445667889999999999999987 5666667 999999999999 8999999999 9999982 110
Q ss_pred ----c---------------------eeeeeccccCCCCcccEEEEEEeCC--eEEEEecCCeEEEEeCCCCcccccccc
Q 013717 128 ----T---------------------WTSINTFNDNDSSSGSVKSVTFCDG--KIFTAHQDCKIRVWQLTPTKHHKLKTT 180 (437)
Q Consensus 128 ----~---------------------~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~ 180 (437)
+ ......+..+.+|.+.|.+..|..+ .+++++.|.+..+||+++++....+.
T Consensus 233 ~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~Lt- 311 (481)
T KOG0300|consen 233 DHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILT- 311 (481)
T ss_pred CCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceecccc-
Confidence 0 0111112233678889999999733 49999999999999999998666554
Q ss_pred cCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCc-ceEEEeecccccEEE
Q 013717 181 LPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDL-RCLESIKAHEDAVNA 257 (437)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~ 257 (437)
+|..+.+.++-+| +++++.+.|.+.++||.+.. ..+..|++|.+.|++
T Consensus 312 -----------------------------GHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS 362 (481)
T KOG0300|consen 312 -----------------------------GHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTS 362 (481)
T ss_pred -----------------------------CcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeE
Confidence 7999999999888 88899999999999999743 456778899999999
Q ss_pred EEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEee
Q 013717 258 VAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTG 337 (437)
Q Consensus 258 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 337 (437)
+.|..+.++++|+.|.+|++||++... .++.+++ ..++++.++.+..+..|+.-..+..|++||+...+.......
T Consensus 363 ~vF~~dd~vVSgSDDrTvKvWdLrNMR---splATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrt 438 (481)
T KOG0300|consen 363 VVFNTDDRVVSGSDDRTVKVWDLRNMR---SPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRT 438 (481)
T ss_pred EEEecCCceeecCCCceEEEeeecccc---Ccceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcc
Confidence 999999999999999999999998544 3445554 567899999998888999998899999999987655444445
Q ss_pred eecccccceEEEEeeCC----EEEEEeCCCcEEEeeCCCC
Q 013717 338 ALRGHGKAILCLINVAG----LLMSGSADRTVRIWQRGSD 373 (437)
Q Consensus 338 ~~~~~~~~i~~~~~~~~----~l~~~~~dg~i~iwd~~~~ 373 (437)
...+|...|.|.+|..+ -|++++.|..+.=|.+...
T Consensus 439 sRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 439 SRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 56789999999999866 7889999999999998763
No 111
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.2e-26 Score=185.30 Aligned_cols=274 Identities=18% Similarity=0.298 Sum_probs=208.8
Q ss_pred CccCCeEEEEee--CCEEEEEecC-eEEEEeCCC--CceeeeeccccCCCCcccEEEEEEe-CCe---EEEEecCCeEEE
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTG--TTWTSINTFNDNDSSSGSVKSVTFC-DGK---IFTAHQDCKIRV 166 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~--~~~~~~~~~~~~~~h~~~v~~l~~~-~~~---l~s~~~dg~i~i 166 (437)
+|.+-|.|+.|+ |+.+|+++.| +|+|||.+. +.+...... ..|.+.|..+.|. |.. +++++.|+++.|
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~W---rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSW---RAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeE---EecCCcEEEEEecCccccceEEEEecCCceee
Confidence 899999999999 9999999999 999999653 467777777 6799999999998 433 999999999999
Q ss_pred EeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC----CeEEEEECCCcEEEEECCCc
Q 013717 167 WQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN----GLIYSVSWDKSLKIWRASDL 242 (437)
Q Consensus 167 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~ 242 (437)
|.-........- ..-.....+......|+++.|.| -.+++++.||.+|||+...-
T Consensus 88 WEE~~~~~~~~~---------------------~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp 146 (361)
T KOG2445|consen 88 WEEQEKSEEAHG---------------------RRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDP 146 (361)
T ss_pred eeeccccccccc---------------------ceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCc
Confidence 986421110000 00011233456788999999998 57899999999999987543
Q ss_pred c------eEEEee-------cccccEEEEEEecCCe----EEEEeCC-----CeEEEecCCCCcccceeeEEeeCccccE
Q 013717 243 R------CLESIK-------AHEDAVNAVAVSAGGT----VYTGSAD-----RKIRVWAKPFNEKRHALIATLEKHKSAV 300 (437)
Q Consensus 243 ~------~~~~~~-------~~~~~v~~~~~~~~~~----l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~i 300 (437)
- ...+++ .+.....|+.|+|... |++|+.+ +.+.||....+.+.+..+.++.+|..+|
T Consensus 147 ~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI 226 (361)
T KOG2445|consen 147 MNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPI 226 (361)
T ss_pred cccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcc
Confidence 2 222232 3567788999997553 6666665 5899998877777778888888999999
Q ss_pred EEEEEccC-C---CEEEEEeCCCcEEEEECCC----------------CccceEEeeeecccccceEEEEee--CCEEEE
Q 013717 301 NALALSDD-G---TVLFSGACDRSILVWDRED----------------SANHMVVTGALRGHGKAILCLINV--AGLLMS 358 (437)
Q Consensus 301 ~~~~~~~~-~---~~l~~~~~dg~i~i~d~~~----------------~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~ 358 (437)
++++|.|+ | .+|++++.|| |+||.++. .+........+.+|.+.|..+.|+ |..|++
T Consensus 227 ~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsS 305 (361)
T KOG2445|consen 227 RDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSS 305 (361)
T ss_pred eeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEee
Confidence 99999995 2 4899999999 99999873 122334556688999999998887 779999
Q ss_pred EeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEE
Q 013717 359 GSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAV 395 (437)
Q Consensus 359 ~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~ 395 (437)
.+.||.||+|...-...++|...+.... .+....|.
T Consensus 306 tGdDG~VRLWkany~n~~kC~sv~~~e~-~~~~~~~~ 341 (361)
T KOG2445|consen 306 TGDDGCVRLWKANYNNLWKCTSVLKAEG-SVTKPDFS 341 (361)
T ss_pred cCCCceeeehhhhhhhhheeeeEEeccC-CCCCcccc
Confidence 9999999999988777777887776543 33333343
No 112
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=7.7e-26 Score=182.20 Aligned_cols=252 Identities=16% Similarity=0.278 Sum_probs=196.9
Q ss_pred CCCcccEEEEEEe--CCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717 139 DSSSGSVKSVTFC--DGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT 216 (437)
Q Consensus 139 ~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 216 (437)
.+|..-|.++.|. +.++++|+.|++|+|||.+........ ...+..|.+.|.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~--------------------------Ts~Wrah~~Si~ 63 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSC--------------------------TSSWRAHDGSIW 63 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEE--------------------------eeeEEecCCcEE
Confidence 4688999999998 445999999999999997554321111 123567999999
Q ss_pred EEEeCC----CeEEEEECCCcEEEEECCC---------cceEEEeecccccEEEEEEecCCe---EEEEeCCCeEEEecC
Q 013717 217 GLAVNN----GLIYSVSWDKSLKIWRASD---------LRCLESIKAHEDAVNAVAVSAGGT---VYTGSADRKIRVWAK 280 (437)
Q Consensus 217 ~~~~~~----~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~---l~~~~~dg~v~iwd~ 280 (437)
.+.|.+ +.+++++.|+++.||.-.. .....++......|+.+.|.|... +++++.||.||||+.
T Consensus 64 rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA 143 (361)
T KOG2445|consen 64 RVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEA 143 (361)
T ss_pred EEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEec
Confidence 999965 8899999999999998621 123445667788999999999654 999999999999976
Q ss_pred CCCc--ccceeeEEee-------CccccEEEEEEccC---CCEEEEEeCC-----CcEEEEECCCCccceEEeeeecccc
Q 013717 281 PFNE--KRHALIATLE-------KHKSAVNALALSDD---GTVLFSGACD-----RSILVWDREDSANHMVVTGALRGHG 343 (437)
Q Consensus 281 ~~~~--~~~~~~~~~~-------~~~~~i~~~~~~~~---~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~ 343 (437)
.... ..+.+...++ .+..+..|+.|+|. ..+|++|+.+ +.++||......++......+.+|.
T Consensus 144 ~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~ 223 (361)
T KOG2445|consen 144 PDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT 223 (361)
T ss_pred CCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC
Confidence 4321 2233333333 45667889999983 4578888765 4899999888777777788888999
Q ss_pred cceEEEEeeCC------EEEEEeCCCcEEEeeCCCCC-----------------CeeeeeeecCCCCCeeEEEEEccCCC
Q 013717 344 KAILCLINVAG------LLMSGSADRTVRIWQRGSDG-----------------RFGCLAVLEGHTKPVKSLTAVTEEGQ 400 (437)
Q Consensus 344 ~~i~~~~~~~~------~l~~~~~dg~i~iwd~~~~~-----------------~~~~~~~~~~h~~~v~~l~~~~~~~~ 400 (437)
.+|..++|.|+ +||+++.|| |+||.++... +.+.+..+.+|.+.|..+.|.-.+
T Consensus 224 dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG-- 300 (361)
T KOG2445|consen 224 DPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG-- 300 (361)
T ss_pred CcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee--
Confidence 99999999876 899999999 9999987411 234567788999999999999988
Q ss_pred CceEEEEEecCCCcEEEEeecc
Q 013717 401 NGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 401 ~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
..|.+.|.||+||+|+...
T Consensus 301 ---tiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 301 ---TILSSTGDDGCVRLWKANY 319 (361)
T ss_pred ---eEEeecCCCceeeehhhhh
Confidence 4899999999999998543
No 113
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=6.4e-26 Score=190.72 Aligned_cols=270 Identities=17% Similarity=0.206 Sum_probs=216.6
Q ss_pred ceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccc
Q 013717 61 SLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFN 136 (437)
Q Consensus 61 ~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~ 136 (437)
++...|+.+.+++++.|.++.+++...+. .+.++ ||...|+.+.|+ ...+++++.| .|+||.......... .
T Consensus 224 ald~~~s~~~ilTGG~d~~av~~d~~s~q-~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~--~- 299 (506)
T KOG0289|consen 224 ALDIIPSSSKILTGGEDKTAVLFDKPSNQ-ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS--S- 299 (506)
T ss_pred EEeecCCCCcceecCCCCceEEEecchhh-hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc--c-
Confidence 45556666889999999999999887744 44555 999999999999 7889999999 999999987532222 2
Q ss_pred cCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCc
Q 013717 137 DNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDA 214 (437)
Q Consensus 137 ~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (437)
..|..+|+.+...+.+ |++++.||+..+.|++++..+...... ...-.
T Consensus 300 --~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~----------------------------~s~v~ 349 (506)
T KOG0289|consen 300 --RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE----------------------------TSDVE 349 (506)
T ss_pred --ccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeec----------------------------cccce
Confidence 4699999999998654 999999999999999998755443310 12345
Q ss_pred EEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeE
Q 013717 215 VTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIA 291 (437)
Q Consensus 215 v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~ 291 (437)
+++.+|+| ..+.+|..||.|+|||+.....+..|.+|.++|..++|+.+|. +++++.|+.|++||++... ...
T Consensus 350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~----n~k 425 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK----NFK 425 (506)
T ss_pred eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc----ccc
Confidence 89999999 6778889999999999999999999999999999999999999 9999999999999998544 223
Q ss_pred EeeC-ccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEe
Q 013717 292 TLEK-HKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIW 368 (437)
Q Consensus 292 ~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iw 368 (437)
++.. ....+.++.|.+.|.+|+.++.|=+|++++-.+ ..+.....+..|.+...++.|... ++++++.|..++++
T Consensus 426 t~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~--k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 426 TIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT--KSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY 503 (506)
T ss_pred eeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc--ccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence 3322 234799999999999999998776666666443 444555566778878888888755 99999999999888
Q ss_pred eC
Q 013717 369 QR 370 (437)
Q Consensus 369 d~ 370 (437)
.+
T Consensus 504 a~ 505 (506)
T KOG0289|consen 504 AL 505 (506)
T ss_pred ec
Confidence 64
No 114
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=8.7e-26 Score=204.46 Aligned_cols=318 Identities=17% Similarity=0.235 Sum_probs=247.2
Q ss_pred ccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCc
Q 013717 67 SVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSS 142 (437)
Q Consensus 67 ~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~ 142 (437)
..+.+.-++..|.+.+|+... .+.+.++ ++...|+++.-+ =+.+|.|..+ +|.+++++.+ +.+.++. ...
T Consensus 171 YLNKIvvGs~~G~lql~Nvrt-~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d--kil~sFk---~d~ 244 (910)
T KOG1539|consen 171 YLNKIVVGSSQGRLQLWNVRT-GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD--KILMSFK---QDW 244 (910)
T ss_pred heeeEEEeecCCcEEEEEecc-CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccC--cEEEEEE---ccc
Confidence 346677789999999999987 4556666 999999999998 6899999999 9999999984 5666662 225
Q ss_pred ccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEE
Q 013717 143 GSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLA 219 (437)
Q Consensus 143 ~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 219 (437)
+.|+.+.|..|+ +++|+..|.+.+||++..+...... ..|.+.|....
T Consensus 245 g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~-----------------------------nah~~sv~~~~ 295 (910)
T KOG1539|consen 245 GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTR-----------------------------NAHYGSVTGAT 295 (910)
T ss_pred cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeee-----------------------------ccccCCcccce
Confidence 999999999554 8888889999999999877655444 24888888888
Q ss_pred eCC--CeEEEEECCCcEEEEECCCc----ceEEEeecccccEEEEEEe-cCCe-EEEEeCCCeEEEecCCCCccc-----
Q 013717 220 VNN--GLIYSVSWDKSLKIWRASDL----RCLESIKAHEDAVNAVAVS-AGGT-VYTGSADRKIRVWAKPFNEKR----- 286 (437)
Q Consensus 220 ~~~--~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~v~~~~~~-~~~~-l~~~~~dg~v~iwd~~~~~~~----- 286 (437)
|.+ ..+++++.|+.+++|=..++ +.++.-.+|..+..|+.|. .++. +.+++.|++++.+++......
T Consensus 296 fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~ 375 (910)
T KOG1539|consen 296 FLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ 375 (910)
T ss_pred ecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc
Confidence 877 88999999999998855543 3455556899999999987 5666 888999998888865311100
Q ss_pred -------------------cee--------------------------------------eEE-----eeCccccEEEEE
Q 013717 287 -------------------HAL--------------------------------------IAT-----LEKHKSAVNALA 304 (437)
Q Consensus 287 -------------------~~~--------------------------------------~~~-----~~~~~~~i~~~~ 304 (437)
.+. ... ++.....+++++
T Consensus 376 ~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~ 455 (910)
T KOG1539|consen 376 LHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVC 455 (910)
T ss_pred cccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEE
Confidence 000 000 111235688999
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCC-------
Q 013717 305 LSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGR------- 375 (437)
Q Consensus 305 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~------- 375 (437)
.++.|++.+.|+..|.|-+|++.++-....+ ..-..|..+|..++.++. .+++++.+|.+++||......
T Consensus 456 vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf-~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~ 534 (910)
T KOG1539|consen 456 VSFCGNFVFIGYSKGTIDRFNMQSGIHRKSF-GDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG 534 (910)
T ss_pred EeccCceEEEeccCCeEEEEEcccCeeeccc-ccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC
Confidence 9999999999999999999999887532222 123579999999998865 899999999999999876330
Q ss_pred -------------------------------eeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 376 -------------------------------FGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 376 -------------------------------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
.+.++.+.+|.+.|++++|+|++ ++|++++.|++||+||+.++.
T Consensus 535 ~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dg-----rWlisasmD~tIr~wDlpt~~ 609 (910)
T KOG1539|consen 535 SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDG-----RWLISASMDSTIRTWDLPTGT 609 (910)
T ss_pred CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCC-----cEEEEeecCCcEEEEeccCcc
Confidence 11345577999999999999999 589999999999999999987
Q ss_pred C
Q 013717 425 P 425 (437)
Q Consensus 425 ~ 425 (437)
.
T Consensus 610 l 610 (910)
T KOG1539|consen 610 L 610 (910)
T ss_pred e
Confidence 5
No 115
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=3.1e-26 Score=194.03 Aligned_cols=263 Identities=23% Similarity=0.375 Sum_probs=206.6
Q ss_pred CCCcccEEEEEEeCC--eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717 139 DSSSGSVKSVTFCDG--KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT 216 (437)
Q Consensus 139 ~~h~~~v~~l~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 216 (437)
..|.-+|.+++++++ ..++++.+|+|.-|++.+++....+..-+.. .. ..+.... .....|...+.
T Consensus 139 ~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev---~k-----~~~~~~k----~~r~~h~keil 206 (479)
T KOG0299|consen 139 GKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEV---LK-----SHGNPLK----ESRKGHVKEIL 206 (479)
T ss_pred ccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchh---hh-----hccCCCC----cccccccceeE
Confidence 579999999999977 4999999999999999988744222111000 00 0000000 00026999999
Q ss_pred EEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEe
Q 013717 217 GLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATL 293 (437)
Q Consensus 217 ~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 293 (437)
++++++ ++|++|+.|..|.||+.++++.++.+.+|.+.|.+++|-.... +++++.|+.|++|++... ..+.++
T Consensus 207 ~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~----s~vetl 282 (479)
T KOG0299|consen 207 TLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL----SYVETL 282 (479)
T ss_pred EEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh----HHHHHH
Confidence 999988 9999999999999999999999999999999999999986555 999999999999976533 467788
Q ss_pred eCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCC
Q 013717 294 EKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGS 372 (437)
Q Consensus 294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~ 372 (437)
.+|...|..|....-++.+-+|+.|+++++|++.... ...+.++.+.+-|+++-.+ .+++|+.+|.|.+|++..
T Consensus 283 yGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees-----qlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~K 357 (479)
T KOG0299|consen 283 YGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES-----QLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLK 357 (479)
T ss_pred hCCccceeeechhcccceEEeccccceeEEEeccccc-----eeeeeCCCCCeeeEEEecccceeeccCCceEEEeeecc
Confidence 8999999999999888888888899999999995432 2225677888888887654 999999999999999987
Q ss_pred CCCeeeeeee-cCC-----------CCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCCCCCe
Q 013717 373 DGRFGCLAVL-EGH-----------TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSSPL 430 (437)
Q Consensus 373 ~~~~~~~~~~-~~h-----------~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 430 (437)
.+ ++.+. .+| ...|++++..|..+ ++++|+.+|.||+|.+..+.....|+
T Consensus 358 Kk---plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd-----L~asGS~~G~vrLW~i~~g~r~i~~l 419 (479)
T KOG0299|consen 358 KK---PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD-----LLASGSWSGCVRLWKIEDGLRAINLL 419 (479)
T ss_pred cC---ceeEeeccccccCCccccccccceeeeEecccCc-----eEEecCCCCceEEEEecCCcccccee
Confidence 66 23222 122 23799999999875 89999999999999999985544444
No 116
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=6.1e-25 Score=178.06 Aligned_cols=271 Identities=16% Similarity=0.176 Sum_probs=208.4
Q ss_pred ccccceeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEec--C-eEEEEeCCCCceee
Q 013717 57 QSNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAASS--H-EINVYDRTGTTWTS 131 (437)
Q Consensus 57 ~~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~--d-~v~vwd~~~~~~~~ 131 (437)
....++.|+++...+++.+.|-++++++.....+....-.+.-.|..+.|. ...++.++. | +||..++.+ .+.
T Consensus 15 ~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~d--Nky 92 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHD--NKY 92 (311)
T ss_pred CceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeec--Cce
Confidence 345689999999999999999999999997744444333777778888886 566666664 6 999999999 466
Q ss_pred eeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeee
Q 013717 132 INTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWI 209 (437)
Q Consensus 132 ~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (437)
++.+ .||...|..|+.+|.. +++++.|++|++||++..++...+.
T Consensus 93 lRYF---~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~------------------------------ 139 (311)
T KOG1446|consen 93 LRYF---PGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN------------------------------ 139 (311)
T ss_pred EEEc---CCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe------------------------------
Confidence 7777 7999999999999654 9999999999999999766544332
Q ss_pred cCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCc--ceEEEee---cccccEEEEEEecCCe-EEEEeCCCeEEEecCC
Q 013717 210 EHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDL--RCLESIK---AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKP 281 (437)
Q Consensus 210 ~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~--~~~~~~~---~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~ 281 (437)
...-...+|+| -++|++.....|++||++.. .+..++. ......+.|.|+|||+ ++.++..+.+.+.|.-
T Consensus 140 --~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf 217 (311)
T KOG1446|consen 140 --LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAF 217 (311)
T ss_pred --cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEcc
Confidence 22334567888 44555555559999999865 2333443 3467899999999999 8889999999999876
Q ss_pred CCcccceeeEEeeCcccc---EEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecc-cccceEEEEeeCCEEE
Q 013717 282 FNEKRHALIATLEKHKSA---VNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRG-HGKAILCLINVAGLLM 357 (437)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~l~ 357 (437)
.+. ....+..+... .....|.||++++++|+.||+|++|+++++..... +.+ +...+.++.|+|.+..
T Consensus 218 ~G~----~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~----~~~~~~~~~~~~~fnP~~~m 289 (311)
T KOG1446|consen 218 DGT----VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAV----LRGPNGGPVSCVRFNPRYAM 289 (311)
T ss_pred CCc----EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeE----ecCCCCCCccccccCCceee
Confidence 554 45555544332 36788999999999999999999999998874444 334 6888899999999877
Q ss_pred EEeCCCcEEEeeCCC
Q 013717 358 SGSADRTVRIWQRGS 372 (437)
Q Consensus 358 ~~~~dg~i~iwd~~~ 372 (437)
-.+.+..+.+|=...
T Consensus 290 f~sa~s~l~fw~p~~ 304 (311)
T KOG1446|consen 290 FVSASSNLVFWLPDE 304 (311)
T ss_pred eeecCceEEEEeccc
Confidence 788888899996553
No 117
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.95 E-value=7.1e-26 Score=201.01 Aligned_cols=360 Identities=16% Similarity=0.228 Sum_probs=256.5
Q ss_pred ceeeccccccccccCCCceeEEecC--CCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeec
Q 013717 61 SLQTLPSVPSLQKLSPDETINFSSA--SHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINT 134 (437)
Q Consensus 61 ~~~~~~~~~~~~s~s~dg~i~~~~~--~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~ 134 (437)
.-.+.|+.+.+.+-+..|-.++|.. .......... ||.+.|..++|+ |++|.+.+.| +-|+|-.-.. ...-..
T Consensus 321 g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~-q~~wHE 399 (764)
T KOG1063|consen 321 GGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGR-QQEWHE 399 (764)
T ss_pred eEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccccc-ccceee
Confidence 3456778888999999999999993 2333444444 999999999999 9999999999 9999876532 222333
Q ss_pred cccCCCCcccEEEEEEeC-Ce-EEEEecCCeEEEEeCCCCccc----------ccc------cccCccccceeeecC---
Q 013717 135 FNDNDSSSGSVKSVTFCD-GK-IFTAHQDCKIRVWQLTPTKHH----------KLK------TTLPTVNDRLLRFML--- 193 (437)
Q Consensus 135 ~~~~~~h~~~v~~l~~~~-~~-l~s~~~dg~i~iwd~~~~~~~----------~~~------~~~~~~~~~~~~~~~--- 193 (437)
+...+-|...++|+++-+ +. +++|.....+|+++....-.. ... ...+...-....++.
T Consensus 400 iaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~ 479 (764)
T KOG1063|consen 400 IARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGET 479 (764)
T ss_pred ecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccc
Confidence 333366999999999986 44 999999999999987532100 000 000000000000000
Q ss_pred -CCCe---------------eE-----------EeeccceeeecCCCcEEEEEeCC--CeEEEEECC-----CcEEEEEC
Q 013717 194 -PNSY---------------VT-----------VRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWD-----KSLKIWRA 239 (437)
Q Consensus 194 -~~~~---------------~~-----------~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d-----g~i~iwd~ 239 (437)
.... +. .--.+.+.+.||...|.+++.+| +++++++.. ..|++|+.
T Consensus 480 ~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t 559 (764)
T KOG1063|consen 480 NTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNT 559 (764)
T ss_pred ccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEec
Confidence 0000 00 00111244579999999999998 888888754 45999999
Q ss_pred CCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC
Q 013717 240 SDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD 318 (437)
Q Consensus 240 ~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 318 (437)
.+...++.+..|.-.|+.|+|+||++ |++.+.|+++.+|....+..........+.|..-|.+..|+|++.+|++++.|
T Consensus 560 ~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRD 639 (764)
T KOG1063|consen 560 ANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRD 639 (764)
T ss_pred cchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCC
Confidence 99999999999999999999999999 99999999999998754443333344467899999999999999999999999
Q ss_pred CcEEEEECCCCccceEEeeeecccccceEEEEeeCC-------EEEEEeCCCcEEEeeCCCC------CCeee---eeee
Q 013717 319 RSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-------LLMSGSADRTVRIWQRGSD------GRFGC---LAVL 382 (437)
Q Consensus 319 g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-------~l~~~~~dg~i~iwd~~~~------~~~~~---~~~~ 382 (437)
.+|++|.................+...|+++++.+- .+++|-+.|.|.+|..... ..+.. +...
T Consensus 640 K~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~ 719 (764)
T KOG1063|consen 640 KKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCAT 719 (764)
T ss_pred ceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccc
Confidence 999999988763222222134457788888877632 7889999999999996521 11111 2223
Q ss_pred cCCCCCeeEEEEEccC-----CCCceEEEEEecCCCcEEEEeec
Q 013717 383 EGHTKPVKSLTAVTEE-----GQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 383 ~~h~~~v~~l~~~~~~-----~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
.+|...|+.+.|.|.. ...+...|++|++|..+|+++++
T Consensus 720 ~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 720 IGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cChHHhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 4577889999999874 12344678999999999999875
No 118
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=4.8e-26 Score=183.58 Aligned_cols=274 Identities=16% Similarity=0.293 Sum_probs=217.9
Q ss_pred cceeeccccccccccCCCceeEEecCC-----------------Ccceeeeec-CccCCeEEEEee--CCEEEEEecC-e
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSAS-----------------HLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-E 118 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~-----------------~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~ 118 (437)
-...|.|....+++++.|-.|.+.+.. ...+.+++| .|.+.|+++.|+ ...|++|+.| +
T Consensus 116 R~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~t 195 (430)
T KOG0640|consen 116 RAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNT 195 (430)
T ss_pred eeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCe
Confidence 466899999999999999999999874 234678888 999999999999 8899999999 9
Q ss_pred EEEEeCCCCceee-eeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCC
Q 013717 119 INVYDRTGTTWTS-INTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPN 195 (437)
Q Consensus 119 v~vwd~~~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (437)
|++||+.....+. .+.+ ....+|.+|.|.|.+ |+.|....++++||+++.++.......
T Consensus 196 vKlFDfsK~saKrA~K~~----qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd-------------- 257 (430)
T KOG0640|consen 196 VKLFDFSKTSAKRAFKVF----QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPD-------------- 257 (430)
T ss_pred EEEEecccHHHHHHHHHh----hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcc--------------
Confidence 9999998742222 2222 356799999999776 888888899999999988754333211
Q ss_pred CeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee-cc-cccEEEEEEecCCe-EEEEe
Q 013717 196 SYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK-AH-EDAVNAVAVSAGGT-VYTGS 270 (437)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~-~~~v~~~~~~~~~~-l~~~~ 270 (437)
.+|.+.|+++.+++ ++.++|+.||.|++||--.++|+.++. .| ...|.+..|..+++ +++.+
T Consensus 258 -------------~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG 324 (430)
T KOG0640|consen 258 -------------DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG 324 (430)
T ss_pred -------------cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC
Confidence 25999999999998 899999999999999999999998886 44 45788999999999 99999
Q ss_pred CCCeEEEecCCCCcccceeeEEeeCcc-----ccEEEEEEccCCCEEEEEeC-CCcEEEEECCCCccceEEeeeeccccc
Q 013717 271 ADRKIRVWAKPFNEKRHALIATLEKHK-----SAVNALALSDDGTVLFSGAC-DRSILVWDREDSANHMVVTGALRGHGK 344 (437)
Q Consensus 271 ~dg~v~iwd~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~ 344 (437)
.|..+++|.+.++. .+..+.+.. .--+...|+....+++.-.+ .+.+.-||.++......+ ..+|.+
T Consensus 325 ~DS~vkLWEi~t~R----~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~---slgHn~ 397 (430)
T KOG0640|consen 325 KDSTVKLWEISTGR----MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALL---SLGHNG 397 (430)
T ss_pred CcceeeeeeecCCc----eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhc---ccCCCC
Confidence 99999999887654 455554321 11234557766667766544 577999999987654333 357999
Q ss_pred ceEEEEeeCC--EEEEEeCCCcEEEeeCC
Q 013717 345 AILCLINVAG--LLMSGSADRTVRIWQRG 371 (437)
Q Consensus 345 ~i~~~~~~~~--~l~~~~~dg~i~iwd~~ 371 (437)
.+.++..++. .+++++.|-.+|+|--+
T Consensus 398 a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 398 AVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CceEEEeCCCCCceeeecccceeeeeeec
Confidence 9999988876 89999999999999654
No 119
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.95 E-value=1.4e-26 Score=203.67 Aligned_cols=281 Identities=20% Similarity=0.286 Sum_probs=207.9
Q ss_pred CCEEEEEecC-eEEEEeCCCCcee-eeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCc
Q 013717 108 HNFLYAASSH-EINVYDRTGTTWT-SINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPT 183 (437)
Q Consensus 108 ~~~l~s~~~d-~v~vwd~~~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 183 (437)
...|+.+.++ .|.++|......+ ....+.....|.+.|..+.|.++. |++++.|.++++||+++.+....
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~------ 137 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG------ 137 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecc------
Confidence 5789999999 9999999885444 223344456899999999999865 99999999999999998764332
Q ss_pred cccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcc-----------------
Q 013717 184 VNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLR----------------- 243 (437)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~----------------- 243 (437)
..+.+|...|.+++|.+ ..|++|+.||.|.|||++-..
T Consensus 138 ----------------------~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~ 195 (720)
T KOG0321|consen 138 ----------------------RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNT 195 (720)
T ss_pred ----------------------eeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccC
Confidence 23468999999999987 899999999999999986421
Q ss_pred ----------eEEEeeccccc----EEEEEEecCCeEEEEeC-CCeEEEecCCCCccccee--eE--EeeCc---cccEE
Q 013717 244 ----------CLESIKAHEDA----VNAVAVSAGGTVYTGSA-DRKIRVWAKPFNEKRHAL--IA--TLEKH---KSAVN 301 (437)
Q Consensus 244 ----------~~~~~~~~~~~----v~~~~~~~~~~l~~~~~-dg~v~iwd~~~~~~~~~~--~~--~~~~~---~~~i~ 301 (437)
.+...+.+... |+.+.|-.+..||+++. |+.|+|||++.+....+. .. .+.-| .-.+.
T Consensus 196 ~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~ 275 (720)
T KOG0321|consen 196 APTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQV 275 (720)
T ss_pred CCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeE
Confidence 01111223333 44455543444998888 999999999866532211 11 11112 33577
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccc----eEEEEeeCCEEEEEeCCCcEEEeeCCCCCCee
Q 013717 302 ALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKA----ILCLINVAGLLMSGSADRTVRIWQRGSDGRFG 377 (437)
Q Consensus 302 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~----i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 377 (437)
++.....|.+|++.+.|+.|++|++....... ...+.++... -.++.+++.++++|+.|...++|.+.+.+ .
T Consensus 276 nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP--~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e--~ 351 (720)
T KOG0321|consen 276 NLILDSSGTYLFASCTDNSIYFYNMRSLSISP--VAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE--A 351 (720)
T ss_pred EEEecCCCCeEEEEecCCcEEEEeccccCcCc--hhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc--C
Confidence 88888888999999999999999998654322 2222222211 14566778899999999999999999866 5
Q ss_pred eeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 378 CLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 378 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
....+.+|...|++++|.|..-. -++++++|-.+++|++..+-
T Consensus 352 ~~~~l~Ght~eVt~V~w~pS~~t----~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 352 PPALLLGHTREVTTVRWLPSATT----PVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred ChhhhhCcceEEEEEeeccccCC----CceeeccCcceEEEeccCch
Confidence 77888999999999999987644 48888999999999996553
No 120
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.95 E-value=2.8e-24 Score=184.30 Aligned_cols=310 Identities=17% Similarity=0.252 Sum_probs=231.1
Q ss_pred cCCCceeEEecCCCcceeeeecCccCCeEEEEee---CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEE
Q 013717 74 LSPDETINFSSASHLCINSVQLGHKLPIGCIAVH---HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTF 150 (437)
Q Consensus 74 ~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~---~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~ 150 (437)
.+.++.+.+|+.+..........-++.|....|+ .+++++.+.+.+..|++.++.+.....+... .....|.|++|
T Consensus 176 ~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek-~ekk~Vl~v~F 254 (626)
T KOG2106|consen 176 DSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEK-REKKFVLCVTF 254 (626)
T ss_pred CCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeecccc-ccceEEEEEEE
Confidence 3667788999988766665555677889999999 7889999888999999998754333322221 23378999999
Q ss_pred eCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEE
Q 013717 151 CDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSV 228 (437)
Q Consensus 151 ~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~ 228 (437)
.++. +++|..+|.|.||+..+.+..+... .|.+.|.+++.-. ..|++|
T Consensus 255 ~engdviTgDS~G~i~Iw~~~~~~~~k~~~------------------------------aH~ggv~~L~~lr~GtllSG 304 (626)
T KOG2106|consen 255 LENGDVITGDSGGNILIWSKGTNRISKQVH------------------------------AHDGGVFSLCMLRDGTLLSG 304 (626)
T ss_pred cCCCCEEeecCCceEEEEeCCCceEEeEee------------------------------ecCCceEEEEEecCccEeec
Confidence 9877 9999999999999997665333222 4999999998877 888889
Q ss_pred ECCCcEEEEECCCc----------------------------------------ceEEEeecccccEEEEEEecCCe-EE
Q 013717 229 SWDKSLKIWRASDL----------------------------------------RCLESIKAHEDAVNAVAVSAGGT-VY 267 (437)
Q Consensus 229 ~~dg~i~iwd~~~~----------------------------------------~~~~~~~~~~~~v~~~~~~~~~~-l~ 267 (437)
+.|..|..||-.-. .......+|.+....++.+|+.. ++
T Consensus 305 gKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~ 384 (626)
T KOG2106|consen 305 GKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLL 384 (626)
T ss_pred CccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhhee
Confidence 99999999983210 00112236777889999999887 99
Q ss_pred EEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceE
Q 013717 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAIL 347 (437)
Q Consensus 268 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~ 347 (437)
+++.|+.+++|+ . . ++.... .-..+..++.|+|.| .++.|...|...+.|.++.. +..... ...++.
T Consensus 385 T~gqdk~v~lW~-~-~----k~~wt~-~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~----lv~~~~-d~~~ls 451 (626)
T KOG2106|consen 385 TCGQDKHVRLWN-D-H----KLEWTK-IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD----LVTIHT-DNEQLS 451 (626)
T ss_pred eccCcceEEEcc-C-C----ceeEEE-EecCceeEeeccCcc-eEEEeeccceEEEEecccce----eEEEEe-cCCceE
Confidence 999999999996 1 2 122221 245778999999999 99999999999999998733 221111 255555
Q ss_pred EEEee--CCEEEEEeCCCcEEEeeCCCCCC-eeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 348 CLINV--AGLLMSGSADRTVRIWQRGSDGR-FGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 348 ~~~~~--~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
++.++ |.+||.|+.|+.|+||.+....+ +..+... |..+|+.+.|++|+. +|.+-+.|-.|..| .....
T Consensus 452 ~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~--~gs~ithLDwS~Ds~-----~~~~~S~d~eiLyW-~~~~~ 523 (626)
T KOG2106|consen 452 VVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC--SGSPITHLDWSSDSQ-----FLVSNSGDYEILYW-KPSEC 523 (626)
T ss_pred EEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee--cCceeEEeeecCCCc-----eEEeccCceEEEEE-ccccC
Confidence 55554 66999999999999999987652 2223333 338999999999984 89999999999999 66666
Q ss_pred CCCCCeecccc
Q 013717 425 PNSSPLNLQKW 435 (437)
Q Consensus 425 ~~~~~~~~~~w 435 (437)
+...+..-.+|
T Consensus 524 ~~~ts~kDvkW 534 (626)
T KOG2106|consen 524 KQITSVKDVKW 534 (626)
T ss_pred cccceecceee
Confidence 66666655666
No 121
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=7.6e-25 Score=198.45 Aligned_cols=336 Identities=18% Similarity=0.227 Sum_probs=249.5
Q ss_pred ceeeccccccccccCCCceeEEecCCCcceeeeecCc-cCCeEEEEee--C-CEEEEEecC-eEEEEeCCCCceeeeecc
Q 013717 61 SLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGH-KLPIGCIAVH--H-NFLYAASSH-EINVYDRTGTTWTSINTF 135 (437)
Q Consensus 61 ~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h-~~~V~~l~~~--~-~~l~s~~~d-~v~vwd~~~~~~~~~~~~ 135 (437)
++...|-...++-+..+|+|.++++.. .+.+..+.| .++|+++.|. | ..||+|+.. .+.+||++..+......
T Consensus 207 ~ieqsPaLDVVaiG~~~G~ViifNlK~-dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~- 284 (910)
T KOG1539|consen 207 AIEQSPALDVVAIGLENGTVIIFNLKF-DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTR- 284 (910)
T ss_pred EeccCCcceEEEEeccCceEEEEEccc-CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeee-
Confidence 556677788889899999999999976 455666766 5999999998 4 567777776 99999999854443333
Q ss_pred ccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccc-cccccCcc--ccceeeecCCCCe-------------
Q 013717 136 NDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHK-LKTTLPTV--NDRLLRFMLPNSY------------- 197 (437)
Q Consensus 136 ~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~------------- 197 (437)
..|.+.|....|.++. +++++.|+.+++|=.+++.-.. .++.-.++ +.....++..+..
T Consensus 285 ---nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~ 361 (910)
T KOG1539|consen 285 ---NAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRS 361 (910)
T ss_pred ---ccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhh
Confidence 4699999999999887 8899999999999665332110 00000000 0000000000000
Q ss_pred -----------------------------------------------------eE---------Eeeccc----eeeecC
Q 013717 198 -----------------------------------------------------VT---------VRRHKK----KLWIEH 211 (437)
Q Consensus 198 -----------------------------------------------------~~---------~~~~~~----~~~~~~ 211 (437)
++ .+.... .....+
T Consensus 362 fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~ 441 (910)
T KOG1539|consen 362 FSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDP 441 (910)
T ss_pred hhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecC
Confidence 00 000000 111122
Q ss_pred C------CcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEe---ecccccEEEEEEecCCe-EEEEeCCCeEEEec
Q 013717 212 G------DAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESI---KAHEDAVNAVAVSAGGT-VYTGSADRKIRVWA 279 (437)
Q Consensus 212 ~------~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd 279 (437)
. ..+++++.+. ++.+.|+..|.|-+|++++|-....+ ..|..+|+.++...-++ +++++.+|.+.+||
T Consensus 442 ~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~ 521 (910)
T KOG1539|consen 442 KRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWD 521 (910)
T ss_pred ccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEe
Confidence 2 5677777766 89999999999999999999888888 48999999999988777 99999999999998
Q ss_pred CCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEE
Q 013717 280 KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLM 357 (437)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~ 357 (437)
..... ++..++ ....+.++..+.....++.+..|-.|+++|..+.+ ..+.+.+|...|+.++|+++ +|+
T Consensus 522 f~~k~----l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k----vvR~f~gh~nritd~~FS~DgrWli 592 (910)
T KOG1539|consen 522 FKKKV----LKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK----VVREFWGHGNRITDMTFSPDGRWLI 592 (910)
T ss_pred cCCcc----eeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhh----hhHHhhccccceeeeEeCCCCcEEE
Confidence 86432 444444 46678888888888899999999999999997654 66678899999999988865 999
Q ss_pred EEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCC-CcEEEEe
Q 013717 358 SGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLD-GEIRAWQ 419 (437)
Q Consensus 358 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d-g~i~iw~ 419 (437)
+++.|++|++||+.++. ++-.+. -..+.+.+.|+|+++ +|+|+..| .-|++|-
T Consensus 593 sasmD~tIr~wDlpt~~---lID~~~-vd~~~~sls~SPngD-----~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 593 SASMDSTIRTWDLPTGT---LIDGLL-VDSPCTSLSFSPNGD-----FLATVHVDQNGIYLWS 646 (910)
T ss_pred EeecCCcEEEEeccCcc---eeeeEe-cCCcceeeEECCCCC-----EEEEEEecCceEEEEE
Confidence 99999999999999987 554443 457899999999995 89999999 6799996
No 122
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=1.1e-25 Score=209.88 Aligned_cols=275 Identities=19% Similarity=0.285 Sum_probs=219.6
Q ss_pred ccceeeccccccccccC--CCceeEEecCCCc-----------ceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEE
Q 013717 59 NLSLQTLPSVPSLQKLS--PDETINFSSASHL-----------CINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINV 121 (437)
Q Consensus 59 ~~~~~~~~~~~~~~s~s--~dg~i~~~~~~~~-----------~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~v 121 (437)
.+++..+|+...+++++ .||.+.+|+.+.. .+.+.+. .|.+.|+|+.|+ |++||+|++| .|.|
T Consensus 16 IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~i 95 (942)
T KOG0973|consen 16 IFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMI 95 (942)
T ss_pred EEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEE
Confidence 57889999999999999 9999999997332 2333444 899999999999 9999999999 9999
Q ss_pred EeCCC----------------CceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCc
Q 013717 122 YDRTG----------------TTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPT 183 (437)
Q Consensus 122 wd~~~----------------~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 183 (437)
|+... ..|+....+ .+|.+.|..++|+|+. |++++.|++|.+||..+.+....+
T Consensus 96 W~~~~~~~~~~fgs~g~~~~vE~wk~~~~l---~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl----- 167 (942)
T KOG0973|consen 96 WERAEIGSGTVFGSTGGAKNVESWKVVSIL---RGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVL----- 167 (942)
T ss_pred eeecccCCcccccccccccccceeeEEEEE---ecCCCccceeccCCCccEEEEecccceEEEEccccceeeeee-----
Confidence 99882 123444444 7899999999999765 999999999999999887544433
Q ss_pred cccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecc------cccE
Q 013717 184 VNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAH------EDAV 255 (437)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~v 255 (437)
.+|...|..+.|+| ++|++-+.|++|+||++.+....+.+..+ ...+
T Consensus 168 -------------------------~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f 222 (942)
T KOG0973|consen 168 -------------------------RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFF 222 (942)
T ss_pred -------------------------ecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCccee
Confidence 47999999999999 99999999999999998887777666532 3457
Q ss_pred EEEEEecCCe-EEEEeC----CCeEEEecCCCCcccceeeEEeeCccccEEEEEEccC-----CC------------EEE
Q 013717 256 NAVAVSAGGT-VYTGSA----DRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDD-----GT------------VLF 313 (437)
Q Consensus 256 ~~~~~~~~~~-l~~~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~------------~l~ 313 (437)
.-+.|+|||. |++... -..+.|. ....++.-..+-+|.+++.+++|+|. .+ .+|
T Consensus 223 ~RlSWSPDG~~las~nA~n~~~~~~~Ii----eR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~A 298 (942)
T KOG0973|consen 223 LRLSWSPDGHHLASPNAVNGGKSTIAII----ERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAA 298 (942)
T ss_pred eecccCCCcCeecchhhccCCcceeEEE----ecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEE
Confidence 8899999999 666432 3457777 34556677788899999999999981 11 678
Q ss_pred EEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCC
Q 013717 314 SGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSD 373 (437)
Q Consensus 314 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~ 373 (437)
+|+.|++|.||.....+..... +.+ ....|..++|+++ .|++++.||+|.++..+..
T Consensus 299 vgSqDrSlSVW~T~~~RPl~vi-~~l--f~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 299 VGSQDRSLSVWNTALPRPLFVI-HNL--FNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred EecCCccEEEEecCCCCchhhh-hhh--hcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 8999999999999766544332 222 3567888888755 9999999999999988753
No 123
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1.2e-25 Score=196.32 Aligned_cols=307 Identities=18% Similarity=0.251 Sum_probs=227.1
Q ss_pred eeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe---EEEEecCCe
Q 013717 91 NSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK---IFTAHQDCK 163 (437)
Q Consensus 91 ~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~ 163 (437)
+...+ ||++.|.||..+ |.+|++|+.| +|+||.+.++ +++.++ ...+.|.||+|+|.. +++++.+..
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg--Rcvr~~----~~d~~I~~vaw~P~~~~~vLAvA~~~~ 465 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG--RCVRTV----QFDSEIRSVAWNPLSDLCVLAVAVGEC 465 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc--eEEEEE----eecceeEEEEecCCCCceeEEEEecCc
Confidence 33344 999999999988 9999999999 9999999995 556655 246799999999664 666666666
Q ss_pred EEEEeCCCCccccc------ccccCcccc---ceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECC-
Q 013717 164 IRVWQLTPTKHHKL------KTTLPTVND---RLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWD- 231 (437)
Q Consensus 164 i~iwd~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~d- 231 (437)
+.|-+..-+..+.. +...+.... ....+.... ..-.....++...|...|..+.|+. .||++...+
T Consensus 466 ~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~--~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~ 543 (733)
T KOG0650|consen 466 VLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRAS--LDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDS 543 (733)
T ss_pred eEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhh--hhhhccceEEEEecCCccceeeeecCCceEEEeccCC
Confidence 77776554422211 111110000 001111110 0001112456678999999999998 899988654
Q ss_pred --CcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccC
Q 013717 232 --KSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDD 308 (437)
Q Consensus 232 --g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 308 (437)
..|.|+++...+...-|+...+.|.++.|+|... |++++ -..|++||+... .+++.+......|..++.+|.
T Consensus 544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kq----elvKkL~tg~kwiS~msihp~ 618 (733)
T KOG0650|consen 544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQ----ELVKKLLTGSKWISSMSIHPN 618 (733)
T ss_pred CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHH----HHHHHHhcCCeeeeeeeecCC
Confidence 5688999988777777766788899999999887 55554 568999988643 345555556678999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeC------CCCCCeeeee
Q 013717 309 GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQR------GSDGRFGCLA 380 (437)
Q Consensus 309 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~------~~~~~~~~~~ 380 (437)
|..|+.|+.|+.+..||+.-... ....+..|...+..+++++. ++++|+.||++.||.- .......++.
T Consensus 619 GDnli~gs~d~k~~WfDldlssk---Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK 695 (733)
T KOG0650|consen 619 GDNLILGSYDKKMCWFDLDLSSK---PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLK 695 (733)
T ss_pred CCeEEEecCCCeeEEEEcccCcc---hhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeee
Confidence 99999999999999999985543 33446679999999999987 9999999999999853 2233356788
Q ss_pred eecCCCCC----eeEEEEEccCCCCceEEEEEecCCCcEEEE
Q 013717 381 VLEGHTKP----VKSLTAVTEEGQNGVVSVFSGSLDGEIRAW 418 (437)
Q Consensus 381 ~~~~h~~~----v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw 418 (437)
.+.+|... |....|+|..+ +|++++.||+|++|
T Consensus 696 ~L~gH~~~~~~gVLd~~wHP~qp-----WLfsAGAd~tirlf 732 (733)
T KOG0650|consen 696 RLRGHEKTNDLGVLDTIWHPRQP-----WLFSAGADGTIRLF 732 (733)
T ss_pred eccCceeecccceEeecccCCCc-----eEEecCCCceEEee
Confidence 99999765 99999999986 79999999999998
No 124
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.9e-25 Score=199.06 Aligned_cols=351 Identities=14% Similarity=0.109 Sum_probs=242.1
Q ss_pred ccccccccCCCceeEEecCCCcceeeeec-Ccc-----------------------CCeEEEEee--CCEEEEEecC-eE
Q 013717 67 SVPSLQKLSPDETINFSSASHLCINSVQL-GHK-----------------------LPIGCIAVH--HNFLYAASSH-EI 119 (437)
Q Consensus 67 ~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~-----------------------~~V~~l~~~--~~~l~s~~~d-~v 119 (437)
+...++-++.+|.|++++.....-.-..- .|. -...++.|+ .+.|...-.| .+
T Consensus 269 s~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSl 348 (1080)
T KOG1408|consen 269 SSRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSL 348 (1080)
T ss_pred ecceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceE
Confidence 56778888899999999874321111100 111 112355677 7888888888 99
Q ss_pred EEEeCCCCceeeeeccccCCCCcccEEEEEEeC-------------CeEEEEecCCeEEEEeCCCCcccccccccCcccc
Q 013717 120 NVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD-------------GKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVND 186 (437)
Q Consensus 120 ~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-------------~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 186 (437)
+|||+.. ...+......--|...|+.+.-.| +.+++++.|++|++|+++.......+..-.-..+
T Consensus 349 YvWDvrD--~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~ 426 (1080)
T KOG1408|consen 349 YVWDVRD--VNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSAN 426 (1080)
T ss_pred EEEeccc--cccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhh
Confidence 9999987 333333333345888888886543 2299999999999999986432222111000000
Q ss_pred ceeeecCCCCee-------EEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEE
Q 013717 187 RLLRFMLPNSYV-------TVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNA 257 (437)
Q Consensus 187 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~ 257 (437)
.....+..+... ...........+....+.+++++| .+|++|..-|+++||++...+....+..|+..|.|
T Consensus 427 l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilc 506 (1080)
T KOG1408|consen 427 LSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILC 506 (1080)
T ss_pred hhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEE
Confidence 000001111100 011111122244566899999999 99999999999999999999999999999999999
Q ss_pred EEEecCC---e-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCC--CEEEEEeCCCcEEEEECCCCcc
Q 013717 258 VAVSAGG---T-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDG--TVLFSGACDRSILVWDREDSAN 331 (437)
Q Consensus 258 ~~~~~~~---~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~ 331 (437)
+.|+... + |++++.|.-|++||+..+. .++.++.+|...|+++.|.-.| ..+++++.|..|.+=-......
T Consensus 507 LeyS~p~~~~kLLASasrdRlIHV~Dv~rny---~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~ 583 (1080)
T KOG1408|consen 507 LEYSFPVLTNKLLASASRDRLIHVYDVKRNY---DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASS 583 (1080)
T ss_pred EeecCchhhhHhhhhccCCceEEEEeccccc---chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccC
Confidence 9998532 3 9999999999999976543 6788899999999999999877 6888999998775433221111
Q ss_pred ceEEe-eeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEE
Q 013717 332 HMVVT-GALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFS 408 (437)
Q Consensus 332 ~~~~~-~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s 408 (437)
...+. +...-....+..++.++. ++++++.|..|+||++.++++.+..+--++|.+....+...|.+ .||++
T Consensus 584 g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSg-----iY~at 658 (1080)
T KOG1408|consen 584 GRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSG-----IYLAT 658 (1080)
T ss_pred ceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCc-----cEEEE
Confidence 11111 111112344566666655 99999999999999999998555555556688888888899988 48999
Q ss_pred ecCCCcEEEEeeccCCCCC
Q 013717 409 GSLDGEIRAWQVSVSCPNS 427 (437)
Q Consensus 409 ~~~dg~i~iw~~~~~~~~~ 427 (437)
...|.++.++|+-+++.+.
T Consensus 659 Scsdktl~~~Df~sgEcvA 677 (1080)
T KOG1408|consen 659 SCSDKTLCFVDFVSGECVA 677 (1080)
T ss_pred eecCCceEEEEeccchhhh
Confidence 9999999999999987543
No 125
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.3e-24 Score=190.12 Aligned_cols=274 Identities=20% Similarity=0.248 Sum_probs=225.5
Q ss_pred cceeeccccccccccCCCceeEEecCCCcceeeeec--CccCCeEEEEee-CCEEEEEecC-eEEEEeCCCCceeeeecc
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL--GHKLPIGCIAVH-HNFLYAASSH-EINVYDRTGTTWTSINTF 135 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~--~h~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~~~~~~~~~~ 135 (437)
-++++....+.++..-.+|.|.+|++...+-+...+ +.+..|.+++|. +..|++.+.+ .|.-||+.+. +....+
T Consensus 29 ~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~l--k~~~~~ 106 (691)
T KOG2048|consen 29 VSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTL--KQKYNI 106 (691)
T ss_pred EEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccC--ceeEEe
Confidence 467788888889988899999999999988888888 457899999999 8999999988 9999999984 444443
Q ss_pred ccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCC
Q 013717 136 NDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGD 213 (437)
Q Consensus 136 ~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (437)
+...+.|.+++.+|.. ++.|+.||.+...+...++.... ..+....+
T Consensus 107 ---d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~----------------------------r~l~rq~s 155 (691)
T KOG2048|consen 107 ---DSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYK----------------------------RSLMRQKS 155 (691)
T ss_pred ---cCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEE----------------------------eecccccc
Confidence 4578999999999765 88899999777777766542211 12223568
Q ss_pred cEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee--------cccccEEEEEEecCCeEEEEeCCCeEEEecCCCC
Q 013717 214 AVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK--------AHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFN 283 (437)
Q Consensus 214 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~ 283 (437)
.|.+++|++ ..++.|+.||.|++||+..+..+.... ....-|+++.+-.++.|++|..-|+|.+||...+
T Consensus 156 RvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~g 235 (691)
T KOG2048|consen 156 RVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFG 235 (691)
T ss_pred eEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCc
Confidence 999999999 559999999999999999988766221 1334588899988999999999999999976544
Q ss_pred cccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCC
Q 013717 284 EKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADR 363 (437)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg 363 (437)
.+++.+..|.+.|.+++..+++.++++++.|+.|.-|...+.+..+........|...+.+++..+..+++|+.|.
T Consensus 236 ----TLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~ 311 (691)
T KOG2048|consen 236 ----TLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDF 311 (691)
T ss_pred ----chhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceee
Confidence 4778888899999999999999999999999999999988776656666667788889999999999999999998
Q ss_pred cEEEeeC
Q 013717 364 TVRIWQR 370 (437)
Q Consensus 364 ~i~iwd~ 370 (437)
.+.+-..
T Consensus 312 ~l~i~~s 318 (691)
T KOG2048|consen 312 TLAICSS 318 (691)
T ss_pred EEEEccc
Confidence 8777543
No 126
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.2e-25 Score=188.31 Aligned_cols=298 Identities=19% Similarity=0.282 Sum_probs=224.6
Q ss_pred ceeEEecCCCcceeeeecCc-cCCeEEE-EeeCCEEEEEecC--eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC
Q 013717 78 ETINFSSASHLCINSVQLGH-KLPIGCI-AVHHNFLYAASSH--EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG 153 (437)
Q Consensus 78 g~i~~~~~~~~~~~~~~~~h-~~~V~~l-~~~~~~l~s~~~d--~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 153 (437)
.++.+|++.....+.+..+- ...-.++ +..+.|++++... .|.+|.+......... .--.++|.+++-+|.
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~-----~v~Pg~v~al~s~n~ 92 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQY-----IVLPGPVHALASSNL 92 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhh-----cccccceeeeecCCC
Confidence 45889999887666665532 2222223 3347888888866 9999999874222211 235688999999977
Q ss_pred e--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE
Q 013717 154 K--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS 229 (437)
Q Consensus 154 ~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~ 229 (437)
+ |+.|+..|.|++|.+.+|..+..+. .|-..|+|+.|+. .+|++|+
T Consensus 93 G~~l~ag~i~g~lYlWelssG~LL~v~~------------------------------aHYQ~ITcL~fs~dgs~iiTgs 142 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSGILLNVLS------------------------------AHYQSITCLKFSDDGSHIITGS 142 (476)
T ss_pred ceEEEeecccCcEEEEEeccccHHHHHH------------------------------hhccceeEEEEeCCCcEEEecC
Confidence 6 5555599999999999998766554 5999999999987 9999999
Q ss_pred CCCcEEEEECC---------CcceEEEeecccccEEEEEEecCC---eEEEEeCCCeEEEecCCCCcccceeeEEeeCcc
Q 013717 230 WDKSLKIWRAS---------DLRCLESIKAHEDAVNAVAVSAGG---TVYTGSADRKIRVWAKPFNEKRHALIATLEKHK 297 (437)
Q Consensus 230 ~dg~i~iwd~~---------~~~~~~~~~~~~~~v~~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 297 (437)
.||.|.+|++. +-+++..+..|.-+|+++...+.| ++++++.|.++++||+..+. ++..+. ..
T Consensus 143 kDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~----LLlti~-fp 217 (476)
T KOG0646|consen 143 KDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV----LLLTIT-FP 217 (476)
T ss_pred CCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce----eeEEEe-cC
Confidence 99999999873 235678888999999999988764 39999999999999987653 454444 56
Q ss_pred ccEEEEEEccCCCEEEEEeCCCcEEEEECCCCc------------cceEEeeeeccccc--ceEEEEee--CCEEEEEeC
Q 013717 298 SAVNALALSDDGTVLFSGACDRSILVWDREDSA------------NHMVVTGALRGHGK--AILCLINV--AGLLMSGSA 361 (437)
Q Consensus 298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------~~~~~~~~~~~~~~--~i~~~~~~--~~~l~~~~~ 361 (437)
..+.+++.+|-++.+++|+.+|.|.+.++.... ........+.+|.. .|+|++.+ +.+|++|+.
T Consensus 218 ~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~ 297 (476)
T KOG0646|consen 218 SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDE 297 (476)
T ss_pred CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCC
Confidence 789999999999999999999999999886533 11122334567877 88887754 679999999
Q ss_pred CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717 362 DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 362 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
||.++|||+.+.+ +++++....++|+.+.+.|-... .+..-+..-.+-.|++..
T Consensus 298 dg~VcvWdi~S~Q---~iRtl~~~kgpVtnL~i~~~~~~----~~l~~~~~ps~~~~~lkr 351 (476)
T KOG0646|consen 298 DGKVCVWDIYSKQ---CIRTLQTSKGPVTNLQINPLERG----IILFEHKQPSLPNPHLKR 351 (476)
T ss_pred CCCEEEEecchHH---HHHHHhhhccccceeEeeccccc----eecccccCccCCchHhhc
Confidence 9999999999876 88888777899999999665432 233333344455555443
No 127
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=4.9e-25 Score=174.17 Aligned_cols=224 Identities=17% Similarity=0.210 Sum_probs=187.5
Q ss_pred CCCcccEEEEEEeCC--eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717 139 DSSSGSVKSVTFCDG--KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT 216 (437)
Q Consensus 139 ~~h~~~v~~l~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 216 (437)
.+|..+++.|.|+-+ .|.+++.|.+..+|-..+++.+..+ .+|.+.|+
T Consensus 7 ~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty------------------------------~GHtGavW 56 (327)
T KOG0643|consen 7 QGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY------------------------------DGHTGAVW 56 (327)
T ss_pred ccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeee------------------------------cCCCceEE
Confidence 689999999999944 4999999999999998777655444 48999999
Q ss_pred EEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeC------CCeEEEecCCCCcc---
Q 013717 217 GLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSA------DRKIRVWAKPFNEK--- 285 (437)
Q Consensus 217 ~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~------dg~v~iwd~~~~~~--- 285 (437)
|+..+. +.+++|+.|.++++||+++|+++..++ ...+|..+.|+++|.++..+. .+.|.++|++....
T Consensus 57 ~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~ 135 (327)
T KOG0643|consen 57 CCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDID 135 (327)
T ss_pred EEEecCCcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhc
Confidence 999887 999999999999999999999999997 677899999999999554444 36799999884331
Q ss_pred cceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCC
Q 013717 286 RHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADR 363 (437)
Q Consensus 286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg 363 (437)
...++..+..+.+.++.+.|.|-+++|++|..||.|.+||++++.. +......|...|..+.++++ ++++++.|.
T Consensus 136 s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~---~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dt 212 (327)
T KOG0643|consen 136 SEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE---LVDSDEEHSSKINDLQFSRDRTYFITGSKDT 212 (327)
T ss_pred ccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce---eeechhhhccccccccccCCcceEEecccCc
Confidence 2345666677889999999999999999999999999999998753 44445668889988888766 999999999
Q ss_pred cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCC
Q 013717 364 TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQ 400 (437)
Q Consensus 364 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 400 (437)
+-++||..+-+ +++++. -..||++.+++|..+.
T Consensus 213 takl~D~~tl~---v~Kty~-te~PvN~aaisP~~d~ 245 (327)
T KOG0643|consen 213 TAKLVDVRTLE---VLKTYT-TERPVNTAAISPLLDH 245 (327)
T ss_pred cceeeecccee---eEEEee-ecccccceecccccce
Confidence 99999999855 666665 4679999999998764
No 128
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=1.2e-24 Score=193.39 Aligned_cols=350 Identities=18% Similarity=0.221 Sum_probs=249.3
Q ss_pred ccccccccCCCceeEEecCCCcc--------------------e---ee-------eec-CccCCeEEEEee--CCEEEE
Q 013717 67 SVPSLQKLSPDETINFSSASHLC--------------------I---NS-------VQL-GHKLPIGCIAVH--HNFLYA 113 (437)
Q Consensus 67 ~~~~~~s~s~dg~i~~~~~~~~~--------------------~---~~-------~~~-~h~~~V~~l~~~--~~~l~s 113 (437)
+.-.+++.|+|..|++|.+.... . .+ ..+ ||.+.|+++.|+ +..|.+
T Consensus 205 ~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLS 284 (764)
T KOG1063|consen 205 DDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLS 284 (764)
T ss_pred CcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhhee
Confidence 45689999999999999873222 1 11 223 999999999999 668999
Q ss_pred EecC-eEEEEeCCC--CceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccce
Q 013717 114 ASSH-EINVYDRTG--TTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRL 188 (437)
Q Consensus 114 ~~~d-~v~vwd~~~--~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 188 (437)
++.| ++.+|.... |-+.....+....+..+......|+++. +++-+..|..++|.............+.++.+..
T Consensus 285 ASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V 364 (764)
T KOG1063|consen 285 ASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGV 364 (764)
T ss_pred cccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccc
Confidence 9999 999998775 4566666665555667789999999877 8888999999999944433333333333333222
Q ss_pred eee--cCCCCeeEEeec-----------cc------eeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCC------
Q 013717 189 LRF--MLPNSYVTVRRH-----------KK------KLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASD------ 241 (437)
Q Consensus 189 ~~~--~~~~~~~~~~~~-----------~~------~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~------ 241 (437)
..+ ...+.++..... .+ ..-+-|...++|+++-+ ..+++|.....+|+|+...
T Consensus 365 ~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l 444 (764)
T KOG1063|consen 365 KDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSL 444 (764)
T ss_pred eeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHH
Confidence 211 111222211110 11 11134777888998866 6778888888899997642
Q ss_pred -------------------------------------c---------------------------------ceEEEeecc
Q 013717 242 -------------------------------------L---------------------------------RCLESIKAH 251 (437)
Q Consensus 242 -------------------------------------~---------------------------------~~~~~~~~~ 251 (437)
| ..++.+.+|
T Consensus 445 ~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGH 524 (764)
T KOG1063|consen 445 MAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGH 524 (764)
T ss_pred HHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccC
Confidence 0 011224478
Q ss_pred cccEEEEEEecCCe-EEEEeCC-----CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEE
Q 013717 252 EDAVNAVAVSAGGT-VYTGSAD-----RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD 325 (437)
Q Consensus 252 ~~~v~~~~~~~~~~-l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 325 (437)
...|.+++.+|++. +|+++.. -.|++|+ ...+.....+.+|.-.|+.++|+|||++|++.+.|.++.+|.
T Consensus 525 GyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~----t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~ 600 (764)
T KOG1063|consen 525 GYEVYALAISPTGNLIASACKSSLKEHAVIRLWN----TANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYE 600 (764)
T ss_pred ceeEEEEEecCCCCEEeehhhhCCccceEEEEEe----ccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeee
Confidence 88999999999999 7777654 4589994 444556667889999999999999999999999999999999
Q ss_pred CCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeee--eecCCCCCeeEEEEEccCCCC
Q 013717 326 REDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLA--VLEGHTKPVKSLTAVTEEGQN 401 (437)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~ 401 (437)
.........-......|..-|...+|.++ +++|++.|.+|++|....... +.+. ....+..+|+++++.|-....
T Consensus 601 ~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d-~~i~~~a~~~~~~aVTAv~~~~~~~~e 679 (764)
T KOG1063|consen 601 VQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRD-KYISRFACLKFSLAVTAVAYLPVDHNE 679 (764)
T ss_pred eecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchh-hhhhhhchhccCCceeeEEeecccccc
Confidence 85432222122236779988998888876 899999999999999887621 1121 344588999999999865433
Q ss_pred ceEEEEEecCCCcEEEEeec
Q 013717 402 GVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 402 ~~~~l~s~~~dg~i~iw~~~ 421 (437)
...+++.|-..|.|.+|+..
T Consensus 680 ~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 680 KGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred ccceEEEEecccEEEEEecc
Confidence 33467888889999999976
No 129
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.6e-24 Score=189.91 Aligned_cols=282 Identities=17% Similarity=0.268 Sum_probs=224.8
Q ss_pred CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC-eEEEEecCCeEEEEeCCC
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG-KIFTAHQDCKIRVWQLTP 171 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~~~dg~i~iwd~~~ 171 (437)
--...|.||||+ .+.||.+-.+ .|.+|++... +-....+. .+....|.+|+|.++ +|.+.+.+|.|..||+.+
T Consensus 23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~-w~~~~vi~--g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN-WFLEPVIH--GPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHT 99 (691)
T ss_pred eeccceEEEEEeccCCceeeeccCCcEEEEccCCC-ceeeEEEe--cCCCCceeeEEEccCCeEEeecCCceEEEEeccc
Confidence 445789999999 7778988888 9999999885 55555553 245678999999955 499999999999999998
Q ss_pred CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEE--
Q 013717 172 TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLES-- 247 (437)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~-- 247 (437)
.+...... ...+.|++++.+| ..++.|+.||.+..++...++....
T Consensus 100 lk~~~~~d------------------------------~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~ 149 (691)
T KOG2048|consen 100 LKQKYNID------------------------------SNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRS 149 (691)
T ss_pred CceeEEec------------------------------CCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEee
Confidence 87554443 3667999999999 8899999999888888877765443
Q ss_pred eecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEee----CccccEEEEEEccCCCEEEEEeCCCcEE
Q 013717 248 IKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLE----KHKSAVNALALSDDGTVLFSGACDRSIL 322 (437)
Q Consensus 248 ~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 322 (437)
+...++.|.++.|+|++. ++.|+.||.|++||...+.........+. ....-|.++.|-.++ .|++|+.-|+|.
T Consensus 150 l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~ 228 (691)
T KOG2048|consen 150 LMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVT 228 (691)
T ss_pred cccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEE
Confidence 334578999999999999 99999999999999876653331111111 133457888888665 799999999999
Q ss_pred EEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCC-eeeeeeecCCCCCeeEEEEEccCC
Q 013717 323 VWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGR-FGCLAVLEGHTKPVKSLTAVTEEG 399 (437)
Q Consensus 323 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~h~~~v~~l~~~~~~~ 399 (437)
+||...+. +...+..|...|.+++...+ .+++++.|+.|.-|...+.+. +........|...|.+++..++
T Consensus 229 FWd~~~gT----LiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~-- 302 (691)
T KOG2048|consen 229 FWDSIFGT----LIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN-- 302 (691)
T ss_pred EEcccCcc----hhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--
Confidence 99998776 66667789999999987754 999999999999998877653 4455566778899999999986
Q ss_pred CCceEEEEEecCCCcEEEEeecc
Q 013717 400 QNGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 400 ~~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
.+++||.|+.+.+-....
T Consensus 303 -----~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 303 -----ALISGGRDFTLAICSSRE 320 (691)
T ss_pred -----eEEecceeeEEEEccccc
Confidence 599999999998876655
No 130
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=5.6e-25 Score=186.82 Aligned_cols=269 Identities=19% Similarity=0.280 Sum_probs=199.8
Q ss_pred EEEEecC--eEEEEeCCCCceeeeeccccCCCC-cccEEEEEE-eCCeEEEE-ecCCeEEEEeCCCCcccccccccCccc
Q 013717 111 LYAASSH--EINVYDRTGTTWTSINTFNDNDSS-SGSVKSVTF-CDGKIFTA-HQDCKIRVWQLTPTKHHKLKTTLPTVN 185 (437)
Q Consensus 111 l~s~~~d--~v~vwd~~~~~~~~~~~~~~~~~h-~~~v~~l~~-~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~~ 185 (437)
..+++.| .+.+||+.+|. ...+++ +. ...-.++.. .+..++++ ..-..|.+|.+..........
T Consensus 10 ~sssS~d~~~~~~~dl~TGt--~~~~yk---g~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~------ 78 (476)
T KOG0646|consen 10 CSSSSFDPINCIVWDLRTGT--SLLQYK---GSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYI------ 78 (476)
T ss_pred EeccCCCCcceeEEecCCCc--eeEEec---CcccccchhhhhhchhheeeecccCccccccccCchhhhhhhc------
Confidence 3445556 79999999963 233331 11 111122222 23444444 445579999987665443221
Q ss_pred cceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecC
Q 013717 186 DRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAG 263 (437)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 263 (437)
--.++|.+++-+| .+++.|+..|.|++|.+.+|+.+..+..|-..|+|+.|+.|
T Consensus 79 ------------------------v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~d 134 (476)
T KOG0646|consen 79 ------------------------VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDD 134 (476)
T ss_pred ------------------------ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCC
Confidence 1456899999988 55555559999999999999999999999999999999999
Q ss_pred Ce-EEEEeCCCeEEEecCCC-----CcccceeeEEeeCccccEEEEEEccC--CCEEEEEeCCCcEEEEECCCCccceEE
Q 013717 264 GT-VYTGSADRKIRVWAKPF-----NEKRHALIATLEKHKSAVNALALSDD--GTVLFSGACDRSILVWDREDSANHMVV 335 (437)
Q Consensus 264 ~~-l~~~~~dg~v~iwd~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (437)
|. |++|+.||.|.+|++.. +....+++..+..|.-+|+++...+. ..+|++++.|.++++||+..+.....+
T Consensus 135 gs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti 214 (476)
T KOG0646|consen 135 GSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI 214 (476)
T ss_pred CcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE
Confidence 99 99999999999997632 12244678889999999999998875 358999999999999999887644333
Q ss_pred eeeecccccceEEEEee--CCEEEEEeCCCcEEEeeCCCCC-------------CeeeeeeecCCCC--CeeEEEEEccC
Q 013717 336 TGALRGHGKAILCLINV--AGLLMSGSADRTVRIWQRGSDG-------------RFGCLAVLEGHTK--PVKSLTAVTEE 398 (437)
Q Consensus 336 ~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~-------------~~~~~~~~~~h~~--~v~~l~~~~~~ 398 (437)
. ....+.++..+ +..+++|+.+|.|.+.++..-. ....+..+.||.+ .|+|++.+-|+
T Consensus 215 ~-----fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~Dg 289 (476)
T KOG0646|consen 215 T-----FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDG 289 (476)
T ss_pred e-----cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCc
Confidence 2 23455666655 4599999999999988765422 1235667889998 99999999998
Q ss_pred CCCceEEEEEecCCCcEEEEeeccCC
Q 013717 399 GQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 399 ~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
. +|++|+.||.|+|||+.+..
T Consensus 290 t-----lLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 290 T-----LLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred c-----EEEeeCCCCCEEEEecchHH
Confidence 5 89999999999999987654
No 131
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.94 E-value=3.1e-24 Score=174.48 Aligned_cols=287 Identities=17% Similarity=0.316 Sum_probs=215.6
Q ss_pred CccCCeEEEEee-------CCEEEEEecCeEEEEeCCCCce-eeeeccccCCCCcccEEEEEEe---CC-e--EEEEecC
Q 013717 96 GHKLPIGCIAVH-------HNFLYAASSHEINVYDRTGTTW-TSINTFNDNDSSSGSVKSVTFC---DG-K--IFTAHQD 161 (437)
Q Consensus 96 ~h~~~V~~l~~~-------~~~l~s~~~d~v~vwd~~~~~~-~~~~~~~~~~~h~~~v~~l~~~---~~-~--l~s~~~d 161 (437)
+|+.+|..++|+ .+.+|+++.+.+.+|......+ ..+... ....|......++|+ .+ . +++++.-
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y-~D~d~~Esfytcsw~yd~~~~~p~la~~G~~ 114 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSY-ADEDHDESFYTCSWSYDSNTGNPFLAAGGYL 114 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeec-cCCCCCcceEEEEEEecCCCCCeeEEeecce
Confidence 899999999998 5778888888999998876432 233333 223577888888887 22 2 8888999
Q ss_pred CeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEE
Q 013717 162 CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWR 238 (437)
Q Consensus 162 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd 238 (437)
|.|+|.|+.+++....+ .+|...|+.+.++| +++++++.|..|++|+
T Consensus 115 GvIrVid~~~~~~~~~~------------------------------~ghG~sINeik~~p~~~qlvls~SkD~svRlwn 164 (385)
T KOG1034|consen 115 GVIRVIDVVSGQCSKNY------------------------------RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWN 164 (385)
T ss_pred eEEEEEecchhhhccce------------------------------eccCccchhhhcCCCCCcEEEEecCCceEEEEe
Confidence 99999999988765544 37999999999998 6999999999999999
Q ss_pred CCCcceEEEee---cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccc---------------------e---ee
Q 013717 239 ASDLRCLESIK---AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRH---------------------A---LI 290 (437)
Q Consensus 239 ~~~~~~~~~~~---~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~---------------------~---~~ 290 (437)
+++..++..+- +|.+.|.++.|+++|. |++++.|..|++|++....-.. . ..
T Consensus 165 I~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f 244 (385)
T KOG1034|consen 165 IQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF 244 (385)
T ss_pred ccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence 99999998874 7999999999999998 9999999999999986221000 0 00
Q ss_pred EEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCC-C---------ccceEEeeeecccccceEEEEee----CCEE
Q 013717 291 ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRED-S---------ANHMVVTGALRGHGKAILCLINV----AGLL 356 (437)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~---------~~~~~~~~~~~~~~~~i~~~~~~----~~~l 356 (437)
.+-.-|...|.|+.|- |+++++=+.++.|..|..-. . +........+.-....|.-+.|. .+.|
T Consensus 245 st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 245 STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 1223466777778876 67999999999999998721 1 11222334444445555444433 4499
Q ss_pred EEEeCCCcEEEeeCCCCCCeeeeeeecC--CCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717 357 MSGSADRTVRIWQRGSDGRFGCLAVLEG--HTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 357 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
|.|...|.|++||++..++.. ..++.. ....|...+|+.++. +|+...+|++|.-||--
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~-~ttl~~s~~~~tVRQ~sfS~dgs-----~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPK-CTTLTHSKSGSTVRQTSFSRDGS-----ILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hhccCCCcEEEEECCCCCCcc-CceEEeccccceeeeeeecccCc-----EEEEEeCCCcEEEEEee
Confidence 999999999999999877432 222222 245799999999985 79999999999999853
No 132
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=9.3e-25 Score=184.36 Aligned_cols=275 Identities=15% Similarity=0.222 Sum_probs=201.9
Q ss_pred ceeeccccccccccCCCce-----eEEecCCCcceeeeec-Ccc----CCeEEEEee---------CCEEEEEecC-eEE
Q 013717 61 SLQTLPSVPSLQKLSPDET-----INFSSASHLCINSVQL-GHK----LPIGCIAVH---------HNFLYAASSH-EIN 120 (437)
Q Consensus 61 ~~~~~~~~~~~~s~s~dg~-----i~~~~~~~~~~~~~~~-~h~----~~V~~l~~~---------~~~l~s~~~d-~v~ 120 (437)
-+...|+.++++.+-.... +++++... -..+ .|. ..-.|++|. |+|+|.|..+ .|.
T Consensus 130 e~~V~psDnlIl~ar~eddvs~LEvYVyn~~e----~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~Ie 205 (463)
T KOG0270|consen 130 EEQVKPSDNLILCARNEDDVSYLEVYVYNEEE----ENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIE 205 (463)
T ss_pred cceeccCCcEEEEeeccCCceEEEEEEEcCCC----cceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeE
Confidence 5566777777665544333 33333322 1122 332 233566663 7899999999 999
Q ss_pred EEeCCCCc-eeeeecc---------------ccCCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCccccccccc
Q 013717 121 VYDRTGTT-WTSINTF---------------NDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTL 181 (437)
Q Consensus 121 vwd~~~~~-~~~~~~~---------------~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~ 181 (437)
|||+.-.. ......+ ....+|+..|.+|.|+... |++|+.|.+|++||+.+++....+.
T Consensus 206 IWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-- 283 (463)
T KOG0270|consen 206 IWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT-- 283 (463)
T ss_pred EeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh--
Confidence 99986420 0000000 1124699999999998443 9999999999999999998665544
Q ss_pred CccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecccccEEEE
Q 013717 182 PTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAV 258 (437)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~ 258 (437)
.|...|.++.|++ ..|++|+.|++|.+.|.+........-...+.|-.+
T Consensus 284 ----------------------------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv 335 (463)
T KOG0270|consen 284 ----------------------------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKV 335 (463)
T ss_pred ----------------------------hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEE
Confidence 4899999999998 899999999999999998533322222356789999
Q ss_pred EEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccC-CCEEEEEeCCCcEEEEECCCCccceEE
Q 013717 259 AVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDD-GTVLFSGACDRSILVWDREDSANHMVV 335 (437)
Q Consensus 259 ~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (437)
+|.|... ++++..||.|+-+|+|... +++.+++.|.++|.++++++. -.++++++.|+.|++|++.........
T Consensus 336 ~w~~~se~~f~~~tddG~v~~~D~R~~~---~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~ 412 (463)
T KOG0270|consen 336 AWDPHSENSFFVSTDDGTVYYFDIRNPG---KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK 412 (463)
T ss_pred EecCCCceeEEEecCCceEEeeecCCCC---CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccc
Confidence 9999776 8899999999999998665 688899999999999999985 348899999999999999865544333
Q ss_pred eeeecccccceEEEEeeCC---EEEEEeCCCcEEEeeCCCCC
Q 013717 336 TGALRGHGKAILCLINVAG---LLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 336 ~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~ 374 (437)
.+.+ .-+...|+++++. +++.|+..+.++|||+.+..
T Consensus 413 ~~~~--~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 413 EHSF--KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred cccc--cccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 3222 1233567777766 88999999999999998755
No 133
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=2.4e-26 Score=204.98 Aligned_cols=244 Identities=22% Similarity=0.374 Sum_probs=204.1
Q ss_pred EEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEe-CCe-EEEEecCCeEEEEeCCCCcccccccccCccccc
Q 013717 111 LYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC-DGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDR 187 (437)
Q Consensus 111 l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 187 (437)
+...... .+++||.+.. ..|...|.++..- ..+ +++|+.|..+-+|.+........
T Consensus 7 ~m~~~~~t~Lr~~~~~~~-----------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S---------- 65 (825)
T KOG0267|consen 7 LMKTKRATKLRVWDTREF-----------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS---------- 65 (825)
T ss_pred cceeeeeeccccccchhh-----------hhhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe----------
Confidence 3344444 6777776441 3488888888864 223 99999999999999875543222
Q ss_pred eeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe
Q 013717 188 LLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT 265 (437)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 265 (437)
+.+|+.+|.++.|+. .+|++|+.+|+|++||++..+.++++.+|...+.++.|+|.+.
T Consensus 66 --------------------~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~ 125 (825)
T KOG0267|consen 66 --------------------LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGE 125 (825)
T ss_pred --------------------eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceE
Confidence 247999999999998 8899999999999999999999999999999999999999999
Q ss_pred -EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeeccccc
Q 013717 266 -VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGK 344 (437)
Q Consensus 266 -l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 344 (437)
++.|+.|+.+++||++... +...+.+|...+..+.|+|+|++++.|+.|.+++|||+..++ +...+..|.+
T Consensus 126 ~~a~gStdtd~~iwD~Rk~G----c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk----~~~ef~~~e~ 197 (825)
T KOG0267|consen 126 FFASGSTDTDLKIWDIRKKG----CSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGK----LSKEFKSHEG 197 (825)
T ss_pred EeccccccccceehhhhccC----ceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccc----cccccccccc
Confidence 8899999999999987543 677888899999999999999999999999999999998776 6777888999
Q ss_pred ceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecC
Q 013717 345 AILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSL 411 (437)
Q Consensus 345 ~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~ 411 (437)
.+..+.+++. +++.|+.|+++++||+++- +.+.........|.+++|.|++. .+.+|..
T Consensus 198 ~v~sle~hp~e~Lla~Gs~d~tv~f~dletf---e~I~s~~~~~~~v~~~~fn~~~~-----~~~~G~q 258 (825)
T KOG0267|consen 198 KVQSLEFHPLEVLLAPGSSDRTVRFWDLETF---EVISSGKPETDGVRSLAFNPDGK-----IVLSGEQ 258 (825)
T ss_pred cccccccCchhhhhccCCCCceeeeecccee---EEeeccCCccCCceeeeecCCce-----eeecCch
Confidence 9999998876 8899999999999999974 47777777788999999999983 4555543
No 134
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.8e-25 Score=200.94 Aligned_cols=235 Identities=17% Similarity=0.257 Sum_probs=185.1
Q ss_pred eEEEEee---CCEEEEEecC-eEEEEeCCCC-ceeeeeccccCCCCcccEEEEEEe---CCeEEEEecCCeEEEEeCCCC
Q 013717 101 IGCIAVH---HNFLYAASSH-EINVYDRTGT-TWTSINTFNDNDSSSGSVKSVTFC---DGKIFTAHQDCKIRVWQLTPT 172 (437)
Q Consensus 101 V~~l~~~---~~~l~s~~~d-~v~vwd~~~~-~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iwd~~~~ 172 (437)
+..+.|. .++||+++.+ .|.+||+... +.+.+.. +..|+..++++.|+ |+.|++|+.||+|++||++..
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~---f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~ 166 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTV---FNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK 166 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccchhhhH---hhhhccceeeeeeccCCccEEEecCCCceEEEEeeecc
Confidence 3445565 7999999999 9999999872 1222223 36899999999998 555999999999999999977
Q ss_pred cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCc-ceEEEe
Q 013717 173 KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDL-RCLESI 248 (437)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~-~~~~~~ 248 (437)
+..... .+....|.++.|+| ..++++...|.+++||++.. ++...+
T Consensus 167 ~S~~t~------------------------------~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~ 216 (839)
T KOG0269|consen 167 KSKSTF------------------------------RSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKL 216 (839)
T ss_pred cccccc------------------------------cccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHh
Confidence 644333 34677899999998 89999999999999999865 456677
Q ss_pred ecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCC-EEEEEeC--CCcEEEE
Q 013717 249 KAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGT-VLFSGAC--DRSILVW 324 (437)
Q Consensus 249 ~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~--dg~i~i~ 324 (437)
.+|.++|.|+.|+|++. ||+|+.|++|+|||+..... ..+..+. ...++.++.|-|+.. +|++++. |-.|+||
T Consensus 217 ~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~--~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VW 293 (839)
T KOG0269|consen 217 TAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA--KPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVW 293 (839)
T ss_pred hcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc--cceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEE
Confidence 79999999999999887 99999999999999875432 2333333 457899999999765 4555543 7889999
Q ss_pred ECCCCccceEEeeeecccccceEEEEeeCC---EEEEEeCCCcEEEeeCCCCC
Q 013717 325 DREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 325 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~ 374 (437)
|++. +......+..|...+..++|... .+.+++.||.|..-..++..
T Consensus 294 DvrR---PYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 294 DVRR---PYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred eecc---ccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 9984 44455667789999999998763 89999999988766555533
No 135
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=8.9e-25 Score=180.76 Aligned_cols=208 Identities=22% Similarity=0.343 Sum_probs=170.2
Q ss_pred cCCCcEEEEEeCC----CeEEEEECCCcEEEEECCC----------------cceEEEeecccccEEEEEEec--CCeEE
Q 013717 210 EHGDAVTGLAVNN----GLIYSVSWDKSLKIWRASD----------------LRCLESIKAHEDAVNAVAVSA--GGTVY 267 (437)
Q Consensus 210 ~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~----------------~~~~~~~~~~~~~v~~~~~~~--~~~l~ 267 (437)
.|.+.++.+...+ .+.++=+..|.|+|||+.. .+++.++.+|...=++++|+| .|.++
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 4666666666554 5666678899999999853 356778889999999999999 44599
Q ss_pred EEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccC-CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccce
Q 013717 268 TGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDD-GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI 346 (437)
Q Consensus 268 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i 346 (437)
+|..-+.|++|...++.-. .-...+.+|...|-.++|+|. ...|++|+.||+|+|||++.+.....+.. .+|...|
T Consensus 229 sGDc~~~I~lw~~~~g~W~-vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~--kAh~sDV 305 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWK-VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST--KAHNSDV 305 (440)
T ss_pred cCccccceEeeeeccCcee-ecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe--eccCCce
Confidence 9999999999987653211 112345679999999999995 45899999999999999998854443332 7799999
Q ss_pred EEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 347 LCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 347 ~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
..++|+.. +||+|+.||+++|||++.-+...++..++-|..+|++|.|+|.... .|+++|.|.+|.+||+....
T Consensus 306 NVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s----~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 306 NVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDS----VIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred eeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCc----eEEeccCCCcEEEEEeeccC
Confidence 99999977 8999999999999999987766789999999999999999998775 79999999999999998654
No 136
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.1e-23 Score=178.81 Aligned_cols=283 Identities=15% Similarity=0.216 Sum_probs=217.4
Q ss_pred cCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCC
Q 013717 98 KLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTP 171 (437)
Q Consensus 98 ~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~ 171 (437)
.+.|+++.|+ ...|.+|+.| .++||.++......+..+ .-...+|.+.+|.+++ +++++....+..||+.+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~---~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSI---HLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheee---eeccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence 5789999999 7899999999 999999988655555544 3356799999999765 89999999999999988
Q ss_pred CcccccccccCccccceeeecCCCCeeEEeeccceeeecCC-CcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEe
Q 013717 172 TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG-DAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESI 248 (437)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~ 248 (437)
.+..+.... .++. ..+..+.+++ ++|+..+..|.|.+....+++.+..+
T Consensus 290 ak~~k~~~~----------------------------~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~ 341 (514)
T KOG2055|consen 290 AKVTKLKPP----------------------------YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSF 341 (514)
T ss_pred cccccccCC----------------------------CCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhhee
Confidence 764433221 1222 3344556666 89999999999999999999999999
Q ss_pred ecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCcc-ccEEEEEEccCCCEEEEEeCCCcEEEEEC
Q 013717 249 KAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHK-SAVNALALSDDGTVLFSGACDRSILVWDR 326 (437)
Q Consensus 249 ~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (437)
+ ..+.|..++|+.+++ |++.+.+|.|.+||++.+ .+++.+.... -.-++++.+++|.+||+|+..|.|-|||.
T Consensus 342 K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~----~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 342 K-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN----SCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred e-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCc----ceEEEEeecCccceeeeeecCCCceEEeccCcceEEEecc
Confidence 7 677899999999999 888889999999999765 3566665322 23467888899999999999999999997
Q ss_pred CCCc--cceEEeeeecccccceEEEEeeCC--EEEEEeC--CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCC
Q 013717 327 EDSA--NHMVVTGALRGHGKAILCLINVAG--LLMSGSA--DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQ 400 (437)
Q Consensus 327 ~~~~--~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 400 (437)
.+.. ........+..-...|..+.|+++ +||.++. +..+|+-.+.+-..+.-..+....-+.|+||+|+|.++
T Consensus 417 ~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG- 495 (514)
T KOG2055|consen 417 NSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSG- 495 (514)
T ss_pred chhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCc-
Confidence 6421 111133334455677888888876 5555554 67899999887554333334444556799999999876
Q ss_pred CceEEEEEecCCCcEEEEeec
Q 013717 401 NGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 401 ~~~~~l~s~~~dg~i~iw~~~ 421 (437)
+|+.|-.+|.|.+|++.
T Consensus 496 ----~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 496 ----YLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ----eEEeecCCCceeeEeec
Confidence 89999999999999985
No 137
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=1.3e-23 Score=178.06 Aligned_cols=289 Identities=13% Similarity=0.183 Sum_probs=204.3
Q ss_pred CccCCeEEEEee---C-CEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe---EEEEecCCeEEEE
Q 013717 96 GHKLPIGCIAVH---H-NFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVW 167 (437)
Q Consensus 96 ~h~~~V~~l~~~---~-~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iw 167 (437)
-|.++|++++|+ . .++|+|+.. .|-+||+.+.+ +....+..+..|.++|.+|.|+|.. +++.+.||+|++-
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~-~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~ 262 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE-KDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQ 262 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC-CccCceEEeccCCccccceEecCCChhheeeeccCceeeee
Confidence 788999999999 3 678888877 99999996321 2222233336799999999999654 9999999999999
Q ss_pred eCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcce-
Q 013717 168 QLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRC- 244 (437)
Q Consensus 168 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~- 244 (437)
|++.......+..- .....+..+.++. ..++.+..=|...+||.++...
T Consensus 263 D~~~~i~e~v~s~~----------------------------~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~ 314 (498)
T KOG4328|consen 263 DFEGNISEEVLSLD----------------------------TDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE 314 (498)
T ss_pred eecchhhHHHhhcC----------------------------ccceeeeeccccCCCccEEEeecccceEEEEeecCCcc
Confidence 99977543333211 1233455666655 6777777777999999998765
Q ss_pred EEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEE
Q 013717 245 LESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSIL 322 (437)
Q Consensus 245 ~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 322 (437)
...+..|+..|..|+++|-.. +++++.|++++|||++.-.....++.....|...|.++.|||.+-.|++.+.|..|+
T Consensus 315 ~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IR 394 (498)
T KOG4328|consen 315 YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIR 394 (498)
T ss_pred chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceE
Confidence 556667888999999999876 999999999999999865444433344456999999999999887899999999999
Q ss_pred EEECC----CCccceEEeeeecccccce--EEEEeeC--CEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCC-CeeE-E
Q 013717 323 VWDRE----DSANHMVVTGALRGHGKAI--LCLINVA--GLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTK-PVKS-L 392 (437)
Q Consensus 323 i~d~~----~~~~~~~~~~~~~~~~~~i--~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~-~v~~-l 392 (437)
|||.. .......+.+. ..+...+ ....|++ .++++|-.-..|-|||-..++ .+..+..-.. .|.+ .
T Consensus 395 v~dss~~sa~~~p~~~I~Hn-~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q---~v~el~~P~~~tI~~vn 470 (498)
T KOG4328|consen 395 VFDSSCISAKDEPLGTIPHN-NRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ---MVCELHDPESSTIPSVN 470 (498)
T ss_pred EeecccccccCCccceeecc-CcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE---EeeeccCccccccccce
Confidence 99984 22122212111 1111222 2233444 499999999999999988755 4555433322 4443 4
Q ss_pred EEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717 393 TAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 393 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
.|+|-+.. +++.++..|.|+||--+
T Consensus 471 ~~HP~~~~----~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 471 EFHPMRDT----LAAGGNSSGKIYVFTNK 495 (498)
T ss_pred eecccccc----eeccCCccceEEEEecC
Confidence 57887743 44445557888888544
No 138
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.8e-23 Score=190.42 Aligned_cols=261 Identities=15% Similarity=0.205 Sum_probs=207.6
Q ss_pred CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCC
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPT 172 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~ 172 (437)
+|+..-+.++|. |++|++++.| .|++|+..... .....+ ..+...|.+++...+.|++|+.+++|.+|.+..+
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~-e~P~ti---~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDE-EEPETI---DISGELVSSIACYSNHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcc-cCCchh---hccCceeEEEeecccceEEeeccceEEEeeCCCC
Confidence 899999999998 9999999999 99999988742 223333 2378899999999889999999999999999988
Q ss_pred cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeec
Q 013717 173 KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKA 250 (437)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 250 (437)
+....+. ...-++.+++++. .+++.|+.|-.|++.++.+......+++
T Consensus 87 ~~~~iL~------------------------------Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg 136 (933)
T KOG1274|consen 87 EEDTILA------------------------------RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG 136 (933)
T ss_pred Cccceee------------------------------eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecc
Confidence 7554443 2456788888887 7999999999999999999999999999
Q ss_pred ccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEee---C-ccccEEEEEEccCCCEEEEEeCCCcEEEEE
Q 013717 251 HEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLE---K-HKSAVNALALSDDGTVLFSGACDRSILVWD 325 (437)
Q Consensus 251 ~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 325 (437)
|.++|.++.|+|++. ||+.+.||.|++||+........+..... . ....+..++|+|+|..|++...|+.|++|+
T Consensus 137 h~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~ 216 (933)
T KOG1274|consen 137 HDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYS 216 (933)
T ss_pred cCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEc
Confidence 999999999999999 99999999999999975442221111111 1 135577899999988888889999999999
Q ss_pred CCCCccceEEeeeecccccceEEEEe--eCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCC
Q 013717 326 REDSANHMVVTGALRGHGKAILCLIN--VAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEG 399 (437)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 399 (437)
..+.+....+.... +...+.++.| +|.|||+++.||.|.|||.++.. . +.....|.+++|.|+.+
T Consensus 217 r~~we~~f~Lr~~~--~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~---~----~~~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 217 RKGWELQFKLRDKL--SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHE---R----HEFKRAVCCEAWKPNAN 283 (933)
T ss_pred cCCceeheeecccc--cccceEEEEEcCCCcEEeeeccCCcEEEEecccch---h----ccccceeEEEecCCCCC
Confidence 98887666655443 2333555554 56699999999999999999733 1 23346799999999876
No 139
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=2.9e-23 Score=177.82 Aligned_cols=285 Identities=17% Similarity=0.193 Sum_probs=206.0
Q ss_pred ccCCCceeEEecCCCcceeeeecCc--cCCeEEEEee-CCEEEEEe--cC-eEEEEeCCCCceeeeeccccCCCCcccEE
Q 013717 73 KLSPDETINFSSASHLCINSVQLGH--KLPIGCIAVH-HNFLYAAS--SH-EINVYDRTGTTWTSINTFNDNDSSSGSVK 146 (437)
Q Consensus 73 s~s~dg~i~~~~~~~~~~~~~~~~h--~~~V~~l~~~-~~~l~s~~--~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~ 146 (437)
.++....+.+||.......-..+.| ...|.++.|+ .++|++++ .| .|++|.-... ...+.......+. .-.
T Consensus 7 ~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~-~~~Vp~~~k~~gd--~~~ 83 (673)
T KOG4378|consen 7 VASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGK-TPEVPRVRKLTGD--NAF 83 (673)
T ss_pred eeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCC-CCccceeeccccc--hHH
Confidence 3455557888988543322222222 2348999998 66576665 45 8889976653 1111111111222 223
Q ss_pred EEEEe--CCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--
Q 013717 147 SVTFC--DGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-- 222 (437)
Q Consensus 147 ~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-- 222 (437)
|++.. .-.+++|+..+.|+|||++.....+.+ .+|...|+++.++.
T Consensus 84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~l------------------------------kdh~stvt~v~YN~~D 133 (673)
T KOG4378|consen 84 CVACASQSLYEISGGQSGCVKIWDLRAKLIHRFL------------------------------KDHQSTVTYVDYNNTD 133 (673)
T ss_pred HHhhhhcceeeeccCcCceeeehhhHHHHHhhhc------------------------------cCCcceeEEEEecCCc
Confidence 33332 133999999999999999854433333 36999999999987
Q ss_pred CeEEEEECCCcEEEEECCCcceEEEeecc-cccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCcccc
Q 013717 223 GLIYSVSWDKSLKIWRASDLRCLESIKAH-EDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSA 299 (437)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 299 (437)
.+|++++..|.|.|..+.++.....+... ...|.-+.|+|..+ |.+++.+|.|.+||+.... ......+.|..+
T Consensus 134 eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s---p~~~~~~~HsAP 210 (673)
T KOG4378|consen 134 EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS---PIFHASEAHSAP 210 (673)
T ss_pred ceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC---cccchhhhccCC
Confidence 89999999999999999999888888744 45667899999887 8889999999999986443 234445679999
Q ss_pred EEEEEEccC-CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeee
Q 013717 300 VNALALSDD-GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGC 378 (437)
Q Consensus 300 i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 378 (437)
...|+|+|. ..+|++.+.|..|.+||++..+....+.. .|.-...++..+|.+|++|...|.|..||++..+ .+
T Consensus 211 ~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y---~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k--~P 285 (673)
T KOG4378|consen 211 CRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTY---SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK--AP 285 (673)
T ss_pred cCcceecCCccceEEEecccceEEEeecccccccceeee---cCCcceeeecCCceEEEeecCCceEEEEecccCC--CC
Confidence 999999995 55888999999999999986553333321 2333334444456699999999999999999866 68
Q ss_pred eeeecCCCCCeeEEEEEccC
Q 013717 379 LAVLEGHTKPVKSLTAVTEE 398 (437)
Q Consensus 379 ~~~~~~h~~~v~~l~~~~~~ 398 (437)
+.++.+|...|++++|-+..
T Consensus 286 v~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 286 VAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred ceEeeecccceeEEEeeecc
Confidence 99999999999999999863
No 140
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=7.4e-24 Score=186.65 Aligned_cols=317 Identities=18% Similarity=0.229 Sum_probs=208.7
Q ss_pred ccccccCCCceeEEecCCCccee------eeecCccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCC
Q 013717 69 PSLQKLSPDETINFSSASHLCIN------SVQLGHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDND 139 (437)
Q Consensus 69 ~~~~s~s~dg~i~~~~~~~~~~~------~~~~~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~ 139 (437)
..++.+..||.|.+++....... ...+.|...|..++|. ...|++++.| ++++||++..+..-...+ .
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~---~ 141 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLN---L 141 (720)
T ss_pred ceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceee---c
Confidence 35666788999999988443222 2223999999999999 6789999999 999999998654444333 6
Q ss_pred CCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCC-CCeeEEeeccceeeecCCCc-
Q 013717 140 SSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLP-NSYVTVRRHKKKLWIEHGDA- 214 (437)
Q Consensus 140 ~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~- 214 (437)
+|.+.|.+++|.+.. |++|+.||.|.|||++-........ +. ..+..-... ..-..........+..+...
T Consensus 142 GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~-~~---~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti 217 (720)
T KOG0321|consen 142 GHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEE-FD---NRIYGRHNTAPTPSKPLKKRIRKWKAASNTI 217 (720)
T ss_pred ccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHH-Hh---hhhhccccCCCCCCchhhccccccccccCce
Confidence 899999999998543 9999999999999987543110000 00 000000000 00000011111222233333
Q ss_pred ---EEEEEeCC-CeEEEEEC-CCcEEEEECCCcceEEEee--------cc---cccEEEEEEecCCe-EEEEeCCCeEEE
Q 013717 215 ---VTGLAVNN-GLIYSVSW-DKSLKIWRASDLRCLESIK--------AH---EDAVNAVAVSAGGT-VYTGSADRKIRV 277 (437)
Q Consensus 215 ---v~~~~~~~-~~l~~~~~-dg~i~iwd~~~~~~~~~~~--------~~---~~~v~~~~~~~~~~-l~~~~~dg~v~i 277 (437)
|+.+.|.. ..|++++. |+.|+|||+++........ .+ .-.+.++.....|. |++.+.|+.|.+
T Consensus 218 ~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ 297 (720)
T KOG0321|consen 218 FSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYF 297 (720)
T ss_pred eeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEE
Confidence 55566655 88998887 9999999998765433221 12 33577777777777 666667999999
Q ss_pred ecCCCCcccceeeEEeeCccc--cEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-
Q 013717 278 WAKPFNEKRHALIATLEKHKS--AVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG- 354 (437)
Q Consensus 278 wd~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 354 (437)
|++..... .++..+.++.. .-..-..+||+.++++|+.|...++|.+...+.... .+.+|...|+++.|.+.
T Consensus 298 ynm~s~s~--sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~---~l~Ght~eVt~V~w~pS~ 372 (720)
T KOG0321|consen 298 YNMRSLSI--SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA---LLLGHTREVTTVRWLPSA 372 (720)
T ss_pred EeccccCc--CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh---hhhCcceEEEEEeecccc
Confidence 99875432 23333333322 122334689999999999999999999987655433 36789999999998765
Q ss_pred --EEEEEeCCCcEEEeeCCCCCC-----------eeeeeeecCCCCCeeEEEEEcc
Q 013717 355 --LLMSGSADRTVRIWQRGSDGR-----------FGCLAVLEGHTKPVKSLTAVTE 397 (437)
Q Consensus 355 --~l~~~~~dg~i~iwd~~~~~~-----------~~~~~~~~~h~~~v~~l~~~~~ 397 (437)
-++++++|..++||++..+-. ......+++|...+..+.++-.
T Consensus 373 ~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~ 428 (720)
T KOG0321|consen 373 TTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLR 428 (720)
T ss_pred CCCceeeccCcceEEEeccCchhhccccccchhhhhhhhhhhcccccccccccccc
Confidence 678889999999999865331 1123344666666666555543
No 141
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=5.8e-24 Score=179.62 Aligned_cols=265 Identities=17% Similarity=0.215 Sum_probs=191.4
Q ss_pred ccEEEEEEe---------CCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCC
Q 013717 143 GSVKSVTFC---------DGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGD 213 (437)
Q Consensus 143 ~~v~~l~~~---------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (437)
....|+.|. ++.++.|+.|..|.|||+.-.........+.... .+.....+.....-.+|+.
T Consensus 174 afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~---------sk~~~k~~k~~~~~~gHTd 244 (463)
T KOG0270|consen 174 AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKA---------SKKKKKKGKRSNSASGHTD 244 (463)
T ss_pred CcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhh---------hhhhhhhcccccccccchH
Confidence 344677764 1249999999999999987432211111110000 0000000011112246999
Q ss_pred cEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccce
Q 013717 214 AVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHA 288 (437)
Q Consensus 214 ~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~ 288 (437)
.|.+++|+. +.|++|+.|.+|++||+.++++...+..|.+.|.++.|+|..- |++|+.|++|.+.|.+.......
T Consensus 245 avl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~ 324 (463)
T KOG0270|consen 245 AVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGK 324 (463)
T ss_pred HHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCc
Confidence 999999987 8999999999999999999999999999999999999999775 99999999999999985222211
Q ss_pred eeEEeeCccccEEEEEEccCC-CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEEeCCCc
Q 013717 289 LIATLEKHKSAVNALALSDDG-TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGSADRT 364 (437)
Q Consensus 289 ~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~ 364 (437)
.++ ..+.|-.++|.|.. ..++++..||+|+-+|+|... .....+.+|...|.+++++.. ++++++.|+.
T Consensus 325 ---~wk-~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~---~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~ 397 (463)
T KOG0270|consen 325 ---EWK-FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG---KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV 397 (463)
T ss_pred ---eEE-eccceEEEEecCCCceeEEEecCCceEEeeecCCCC---CceeEEEeccCCcceEEecCCCCcceeeccccce
Confidence 222 45778999999954 477888899999999999764 244556789999999998754 9999999999
Q ss_pred EEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCCCC
Q 013717 365 VRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSS 428 (437)
Q Consensus 365 i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 428 (437)
|++|++..... ..+..-.-.-+...|.++.|+... +++.||..+.++|||+.+..++..
T Consensus 398 Vklw~~~~~~~-~~v~~~~~~~~rl~c~~~~~~~a~----~la~GG~k~~~~vwd~~~~~~V~k 456 (463)
T KOG0270|consen 398 VKLWKFDVDSP-KSVKEHSFKLGRLHCFALDPDVAF----TLAFGGEKAVLRVWDIFTNSPVRK 456 (463)
T ss_pred EEEEeecCCCC-cccccccccccceeecccCCCcce----EEEecCccceEEEeecccChhHHH
Confidence 99999876441 112111111234677778887764 889999999999999998876543
No 142
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=7.7e-23 Score=165.56 Aligned_cols=285 Identities=16% Similarity=0.241 Sum_probs=203.2
Q ss_pred ceeeeecCccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCe
Q 013717 89 CINSVQLGHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCK 163 (437)
Q Consensus 89 ~~~~~~~~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~ 163 (437)
..+..++.|.. -.|+.|+ |.+||+|..| .|.|||+.+. ...+.+ .+|..+|.+++|++++ |++++.|..
T Consensus 15 Eel~~tld~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~--~iar~l---saH~~pi~sl~WS~dgr~LltsS~D~s 88 (405)
T KOG1273|consen 15 EELTHTLDNPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTF--RIARML---SAHVRPITSLCWSRDGRKLLTSSRDWS 88 (405)
T ss_pred HhhceeccCCc-cceEEeccCcceeeeeccCCcEEEEEcccc--chhhhh---hccccceeEEEecCCCCEeeeecCCce
Confidence 44455553433 7899999 9999999999 9999999994 333444 6799999999999665 999999999
Q ss_pred EEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECC
Q 013717 164 IRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRAS 240 (437)
Q Consensus 164 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~ 240 (437)
|.+||+..+.....+. ...+|+...|+| +..++.-.+..-.+.++.
T Consensus 89 i~lwDl~~gs~l~rir-------------------------------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s 137 (405)
T KOG1273|consen 89 IKLWDLLKGSPLKRIR-------------------------------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFS 137 (405)
T ss_pred eEEEeccCCCceeEEE-------------------------------ccCccceeeeccccCCeEEEEEecCCcEEEEec
Confidence 9999999987655554 677899999998 555555445445555554
Q ss_pred CcceEEEee-cc----cccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCcc-ccEEEEEEccCCCEEE
Q 013717 241 DLRCLESIK-AH----EDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHK-SAVNALALSDDGTVLF 313 (437)
Q Consensus 241 ~~~~~~~~~-~~----~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~ 313 (437)
..+. ..+. .. +....+..|.+.|+ +++|...|.+.++|..+- +++..++-.. ..|..+.++..|+.|+
T Consensus 138 ~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~----e~vas~rits~~~IK~I~~s~~g~~li 212 (405)
T KOG1273|consen 138 DPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL----ECVASFRITSVQAIKQIIVSRKGRFLI 212 (405)
T ss_pred CCce-eeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh----eeeeeeeechheeeeEEEEeccCcEEE
Confidence 4221 1111 11 11223345788888 999999999999976543 5676666555 7899999999999999
Q ss_pred EEeCCCcEEEEECCCCccc-----eEEeeeec----ccccceEEEEeeCCEEEEEeC-CCcEEEeeCCCCCCeeeeeeec
Q 013717 314 SGACDRSILVWDREDSANH-----MVVTGALR----GHGKAILCLINVAGLLMSGSA-DRTVRIWQRGSDGRFGCLAVLE 383 (437)
Q Consensus 314 ~~~~dg~i~i~d~~~~~~~-----~~~~~~~~----~~~~~i~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~ 383 (437)
.-+.|..|+.|+++.--.. ....+.+. ...-.-.|++-+|.|+++|+. ...++||....|. +++.+.
T Consensus 213 iNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~Gs---LVKILh 289 (405)
T KOG1273|consen 213 INTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGS---LVKILH 289 (405)
T ss_pred EecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcc---eeeeec
Confidence 9999999999998731100 00111110 011122444445557776664 4579999999887 899999
Q ss_pred CCC-CCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 384 GHT-KPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 384 ~h~-~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
|.+ ....++.|+|-.+ .+++- ..|.|++|.....+
T Consensus 290 G~kgE~l~DV~whp~rp-----~i~si-~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 290 GTKGEELLDVNWHPVRP-----IIASI-ASGVVYIWAVVQVE 325 (405)
T ss_pred CCchhheeeccccccee-----eeeec-cCCceEEEEeeccc
Confidence 887 5688999999874 46666 78999999876543
No 143
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=2.5e-23 Score=172.24 Aligned_cols=243 Identities=18% Similarity=0.254 Sum_probs=181.3
Q ss_pred CccCCeEEEEee--C--CEEEEEecC-eEEEEeCCCC-----------ceeeeeccccCCCCcccEEEEEEeCC---eEE
Q 013717 96 GHKLPIGCIAVH--H--NFLYAASSH-EINVYDRTGT-----------TWTSINTFNDNDSSSGSVKSVTFCDG---KIF 156 (437)
Q Consensus 96 ~h~~~V~~l~~~--~--~~l~s~~~d-~v~vwd~~~~-----------~~~~~~~~~~~~~h~~~v~~l~~~~~---~l~ 156 (437)
+|.+.|..+... + .+.++-+.. .|+||++... .....+.+....+|.+.=.+|+|+|- .|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 888888887776 3 445555566 9999998641 11222233333789988999999973 399
Q ss_pred EEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCc
Q 013717 157 TAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKS 233 (437)
Q Consensus 157 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~ 233 (437)
+|..-+.|++|...++.-..... -|.+|...|-.++|+| +.|++|+.||+
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~---------------------------Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs 281 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQR---------------------------PFTGHTKSVEDLQWSPTEDGVFASCSCDGS 281 (440)
T ss_pred cCccccceEeeeeccCceeecCc---------------------------cccccccchhhhccCCccCceEEeeecCce
Confidence 99999999999998865332222 2246999999999998 89999999999
Q ss_pred EEEEECCCcc---eEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccC-
Q 013717 234 LKIWRASDLR---CLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDD- 308 (437)
Q Consensus 234 i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 308 (437)
|+|||++.+. ++.+ +.|...|+.|.|+.... |++|+.||+++|||++.- ...+++..++.|..+|++|.|+|.
T Consensus 282 IrIWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~-~~~~pVA~fk~Hk~pItsieW~p~e 359 (440)
T KOG0302|consen 282 IRIWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQF-KSGQPVATFKYHKAPITSIEWHPHE 359 (440)
T ss_pred EEEEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhc-cCCCcceeEEeccCCeeEEEecccc
Confidence 9999999883 3333 68999999999998777 999999999999999954 344788899999999999999994
Q ss_pred CCEEEEEeCCCcEEEEECCCCcc---------------ceEEeeeecccccceEEEEeeCC---EEEEEeCCCcEEEee
Q 013717 309 GTVLFSGACDRSILVWDREDSAN---------------HMVVTGALRGHGKAILCLINVAG---LLMSGSADRTVRIWQ 369 (437)
Q Consensus 309 ~~~l~~~~~dg~i~i~d~~~~~~---------------~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd 369 (437)
...|++++.|.+|.+||+.-..- +..+..... -+..+..+.|+.+ +|++.+.|| +.||.
T Consensus 360 ~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 360 DSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred CceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 55888889999999999863211 111111111 1344566677644 888888888 55553
No 144
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=1.7e-21 Score=172.82 Aligned_cols=266 Identities=14% Similarity=0.114 Sum_probs=177.9
Q ss_pred CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--E-EEEecCCeEEEEeCCCCcccccccccCc
Q 013717 108 HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--I-FTAHQDCKIRVWQLTPTKHHKLKTTLPT 183 (437)
Q Consensus 108 ~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 183 (437)
++.+++++.| .|++||+.+++ ....+ ..+ ..+.+++|+++. + ++++.++.|++||..+++....+.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~--~~~~~---~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---- 70 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLE--VTRTF---PVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP---- 70 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCc--eEEEE---ECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc----
Confidence 3578899988 99999998853 33443 223 346789999764 4 567788999999998775433221
Q ss_pred cccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEE-EECCCcEEEEECCCcceEEEeecccccEEEEEE
Q 013717 184 VNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYS-VSWDKSLKIWRASDLRCLESIKAHEDAVNAVAV 260 (437)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 260 (437)
.+ ..+..+++++ +.+++ +..++.|++||+.+.+.+..+.. ...+.+++|
T Consensus 71 --------------------------~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~ 122 (300)
T TIGR03866 71 --------------------------SG-PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAV 122 (300)
T ss_pred --------------------------CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEE
Confidence 12 2245677877 55544 45689999999999887777652 345788999
Q ss_pred ecCCe-EEEEeCCC-eEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEE-eCCCcEEEEECCCCccceEEee
Q 013717 261 SAGGT-VYTGSADR-KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSG-ACDRSILVWDREDSANHMVVTG 337 (437)
Q Consensus 261 ~~~~~-l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~ 337 (437)
+|++. ++++..++ .+.+||..... ...... ....+..++|+|+|++|+++ ..++.|++||+++++....+..
T Consensus 123 ~~dg~~l~~~~~~~~~~~~~d~~~~~----~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~ 197 (300)
T TIGR03866 123 SPDGKIVVNTSETTNMAHFIDTKTYE----IVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITF 197 (300)
T ss_pred CCCCCEEEEEecCCCeEEEEeCCCCe----EEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeee
Confidence 99998 77777664 56777875432 222222 23346789999999988655 4699999999988754332221
Q ss_pred eecc-cc--cceEEEEe--eCCEE-EEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEe-c
Q 013717 338 ALRG-HG--KAILCLIN--VAGLL-MSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSG-S 410 (437)
Q Consensus 338 ~~~~-~~--~~i~~~~~--~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~-~ 410 (437)
...+ +. .....+.+ +++++ ++.+.++.+.+||+.+.+ .+..+. +...+.+++|+|++. +|+++ +
T Consensus 198 ~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~---~~~~~~-~~~~~~~~~~~~~g~-----~l~~~~~ 268 (300)
T TIGR03866 198 EIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE---VLDYLL-VGQRVWQLAFTPDEK-----YLLTTNG 268 (300)
T ss_pred cccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc---EEEEEE-eCCCcceEEECCCCC-----EEEEEcC
Confidence 1100 11 11223444 45554 444556789999998765 333332 445799999999885 56654 6
Q ss_pred CCCcEEEEeeccCCC
Q 013717 411 LDGEIRAWQVSVSCP 425 (437)
Q Consensus 411 ~dg~i~iw~~~~~~~ 425 (437)
.+|.|++||+++++.
T Consensus 269 ~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 269 VSNDVSVIDVAALKV 283 (300)
T ss_pred CCCeEEEEECCCCcE
Confidence 799999999998875
No 145
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.6e-22 Score=184.14 Aligned_cols=241 Identities=19% Similarity=0.271 Sum_probs=194.9
Q ss_pred CCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCc-ccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717 140 SSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTK-HHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT 216 (437)
Q Consensus 140 ~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 216 (437)
.|....+.|+|.+++ |++++.||.|++|+..... ....+. .+...|.
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~------------------------------~~g~~v~ 60 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETID------------------------------ISGELVS 60 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhh------------------------------ccCceeE
Confidence 599999999999766 9999999999999987652 222111 2778899
Q ss_pred EEEeCCCeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeC
Q 013717 217 GLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEK 295 (437)
Q Consensus 217 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 295 (437)
+++...++|++|+.+++|.+|....++.-..+....-++.+++++.+|. +|.|+.|-.|++.++.... ....+++
T Consensus 61 ~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s----~~~~lrg 136 (933)
T KOG1274|consen 61 SIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS----QEKVLRG 136 (933)
T ss_pred EEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc----hheeecc
Confidence 9999889999999999999999998877666666777899999999999 9999999999999776443 5667889
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecc---c-ccceEEEEeeCC--EEEEEeCCCcEEEee
Q 013717 296 HKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRG---H-GKAILCLINVAG--LLMSGSADRTVRIWQ 369 (437)
Q Consensus 296 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---~-~~~i~~~~~~~~--~l~~~~~dg~i~iwd 369 (437)
|.++|.++.|+|++++||+.+.||.|+|||+.++.....+...... . ...+..++|+++ .++....|+.|++|+
T Consensus 137 h~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~ 216 (933)
T KOG1274|consen 137 HDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYS 216 (933)
T ss_pred cCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEc
Confidence 9999999999999999999999999999999987644433322111 1 233455667665 888889999999999
Q ss_pred CCCCCCeeeeeeecC--CCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717 370 RGSDGRFGCLAVLEG--HTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 370 ~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
..+.. ....+.. +...+..+.|+|.| +||++++.||.|.|||+++
T Consensus 217 r~~we---~~f~Lr~~~~ss~~~~~~wsPnG-----~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 217 RKGWE---LQFKLRDKLSSSKFSDLQWSPNG-----KYIAASTLDGQILVWNVDT 263 (933)
T ss_pred cCCce---eheeecccccccceEEEEEcCCC-----cEEeeeccCCcEEEEeccc
Confidence 88755 4444433 44559999999997 5999999999999999995
No 146
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1e-24 Score=194.63 Aligned_cols=224 Identities=21% Similarity=0.396 Sum_probs=190.0
Q ss_pred CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCC
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLT 170 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~ 170 (437)
.|...|.|+..- ++.+++|+.+ .+-+|.+.. ...+..+ .+|..+|.++.|+... |++|+.+|+|++||++
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k--p~~i~S~---~~hespIeSl~f~~~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK--PNAITSL---TGHESPIESLTFDTSERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeeccccccC--Cchhhee---eccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence 788888888865 8999999999 999999877 3333333 6899999999999655 8899999999999999
Q ss_pred CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEe
Q 013717 171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESI 248 (437)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~ 248 (437)
..+..+.+ .+|...+..+.|+| .+.+.|+.|+.+++||.+..-+.+.+
T Consensus 101 eAk~vrtL------------------------------tgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~ 150 (825)
T KOG0267|consen 101 EAKIVRTL------------------------------TGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTY 150 (825)
T ss_pred hhhhhhhh------------------------------hccccCcceeeeccceEEeccccccccceehhhhccCceeee
Confidence 77654433 37999999999999 78889999999999999988899999
Q ss_pred ecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECC
Q 013717 249 KAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327 (437)
Q Consensus 249 ~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (437)
.+|...|..++|+|+|+ ++.|+.|..++|||+..+ +....|..|.+.+..+.|+|..-+++.|+.|+++++||++
T Consensus 151 ~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag----k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 151 KSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG----KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred cCCcceeEEEeecCCCceeeccCCcceeeeeccccc----ccccccccccccccccccCchhhhhccCCCCceeeeeccc
Confidence 99999999999999998 999999999999987654 4788899999999999999999999999999999999997
Q ss_pred CCccceEEeeeecccccceEEEEeeCC--EEEEEeCC
Q 013717 328 DSANHMVVTGALRGHGKAILCLINVAG--LLMSGSAD 362 (437)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~d 362 (437)
+.+ .+.........|.+..|+++ .+++|..+
T Consensus 227 tfe----~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 227 TFE----VISSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred eeE----EeeccCCccCCceeeeecCCceeeecCchh
Confidence 543 55555556778888888876 55555443
No 147
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=4.2e-23 Score=165.58 Aligned_cols=206 Identities=20% Similarity=0.311 Sum_probs=165.0
Q ss_pred eeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcc------------eEE---EeecccccEEEEEEecCCe--
Q 013717 206 KLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLR------------CLE---SIKAHEDAVNAVAVSAGGT-- 265 (437)
Q Consensus 206 ~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~------------~~~---~~~~~~~~v~~~~~~~~~~-- 265 (437)
.+...|.+.|+++.+.+ +++++|+.||.|.+||++.-. ++. .-.+|+-.|..+.|-|-..
T Consensus 37 d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 37 DFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred ceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCce
Confidence 44466999999999988 999999999999999997532 110 0125778899999988544
Q ss_pred EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccC---CCEEEEEeCCCcEEEEECCCCccceEEeeeeccc
Q 013717 266 VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDD---GTVLFSGACDRSILVWDREDSANHMVVTGALRGH 342 (437)
Q Consensus 266 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 342 (437)
+.+++.|.++++||..+.+ ....|+ .++.|.+-+++|- ..++++|..|-.|++.|+.++. +.+.+.||
T Consensus 117 FtssSFDhtlKVWDtnTlQ----~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs----~sH~LsGH 187 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQ----EAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS----FSHTLSGH 187 (397)
T ss_pred eecccccceEEEeecccce----eeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc----ceeeeccc
Confidence 8899999999999876543 333333 4567888888883 4588889999999999999887 77788999
Q ss_pred ccceEEEEeeCC---EEEEEeCCCcEEEeeCCCCC------------CeeeeeeecCCCCCeeEEEEEccCCCCceEEEE
Q 013717 343 GKAILCLINVAG---LLMSGSADRTVRIWQRGSDG------------RFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVF 407 (437)
Q Consensus 343 ~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~------------~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~ 407 (437)
...|+++.|++. .|++|+.||.|++||++... ....++.-.+|.+.|++++|..++. +++
T Consensus 188 r~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~-----~l~ 262 (397)
T KOG4283|consen 188 RDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR-----YLA 262 (397)
T ss_pred cCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch-----hhh
Confidence 999999999987 89999999999999998642 1112223346778999999999984 799
Q ss_pred EecCCCcEEEEeeccCCC
Q 013717 408 SGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 408 s~~~dg~i~iw~~~~~~~ 425 (437)
+++.|..+++|+...+..
T Consensus 263 ~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 263 SCGTDDRIRVWNMESGRN 280 (397)
T ss_pred hccCccceEEeecccCcc
Confidence 999999999999998865
No 148
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.6e-22 Score=171.70 Aligned_cols=276 Identities=13% Similarity=0.178 Sum_probs=214.5
Q ss_pred cccceeeccccccccccCCCceeEEecCCCc-ceeeeec-CccCCeEEEEee--CC-EEEEEecC-eEEEEeCCCCceee
Q 013717 58 SNLSLQTLPSVPSLQKLSPDETINFSSASHL-CINSVQL-GHKLPIGCIAVH--HN-FLYAASSH-EINVYDRTGTTWTS 131 (437)
Q Consensus 58 ~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~-~~~~~~~-~h~~~V~~l~~~--~~-~l~s~~~d-~v~vwd~~~~~~~~ 131 (437)
...+++|+|..+.+.+++.|++++++.++.. .+.++.+ --..+|.+.+|. |. .+++++.. .+..||+.+.+...
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k 294 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTK 294 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccccc
Confidence 3368999999999999999999999999644 3445555 567899999998 66 88888888 99999999976666
Q ss_pred eeccccCCCCc-ccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceee
Q 013717 132 INTFNDNDSSS-GSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLW 208 (437)
Q Consensus 132 ~~~~~~~~~h~-~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (437)
+... .++. ..+.....+++. |+..+..|.|.+.-..+++.+..++
T Consensus 295 ~~~~---~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K----------------------------- 342 (514)
T KOG2055|consen 295 LKPP---YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK----------------------------- 342 (514)
T ss_pred ccCC---CCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-----------------------------
Confidence 6655 3333 456666677544 9999999999999998887665554
Q ss_pred ecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeeccc-ccEEEEEEecCCe-EEEEeCCCeEEEecCCCC-
Q 013717 209 IEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHE-DAVNAVAVSAGGT-VYTGSADRKIRVWAKPFN- 283 (437)
Q Consensus 209 ~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~- 283 (437)
-.+.|.+++|+. +.|++.+.+|.|.+||++...+++.+.... -.-++++.++++. ||+|+..|.|.|||....
T Consensus 343 --ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~ 420 (514)
T KOG2055|consen 343 --IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCF 420 (514)
T ss_pred --eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhh
Confidence 567888999976 888888899999999999999999887322 1235677778888 999999999999986532
Q ss_pred -cccceeeEEeeCccccEEEEEEccCCCEEEEEeC--CCcEEEEECCCCccceEEeeeec---ccccceEEEEeeCC--E
Q 013717 284 -EKRHALIATLEKHKSAVNALALSDDGTVLFSGAC--DRSILVWDREDSANHMVVTGALR---GHGKAILCLINVAG--L 355 (437)
Q Consensus 284 -~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~--~ 355 (437)
....+++..+......|+++.|++|++.|+.++. +..+++.-+.+.. ....+. ..-+.+.|++|++. +
T Consensus 421 ~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T----VFsNfP~~n~~vg~vtc~aFSP~sG~ 496 (514)
T KOG2055|consen 421 ASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT----VFSNFPTSNTKVGHVTCMAFSPNSGY 496 (514)
T ss_pred ccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEecccee----eeccCCCCCCcccceEEEEecCCCce
Confidence 2234566667777789999999999999988775 6678888775432 222222 23345688888875 9
Q ss_pred EEEEeCCCcEEEeeCC
Q 013717 356 LMSGSADRTVRIWQRG 371 (437)
Q Consensus 356 l~~~~~dg~i~iwd~~ 371 (437)
+|.|..+|.+.+|.+.
T Consensus 497 lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 497 LAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEeecCCCceeeEeec
Confidence 9999999999999875
No 149
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=4.7e-23 Score=176.76 Aligned_cols=244 Identities=18% Similarity=0.283 Sum_probs=193.7
Q ss_pred CCcccEEEEEEeC-Ce-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEE
Q 013717 140 SSSGSVKSVTFCD-GK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTG 217 (437)
Q Consensus 140 ~h~~~v~~l~~~~-~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 217 (437)
.|..-|.++.++. .+ ++||+. |.|+|||+...........++. ......|.+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdc-------------------------l~rdnyiRS 470 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDC-------------------------LNRDNYIRS 470 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccc-------------------------cCcccceee
Confidence 5888999999984 44 777775 7899999986543332222221 124567888
Q ss_pred EEeCC--CeEEEEECCCcEEEEECCCcce--EEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEE
Q 013717 218 LAVNN--GLIYSVSWDKSLKIWRASDLRC--LESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIAT 292 (437)
Q Consensus 218 ~~~~~--~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~ 292 (437)
+...+ +.|++|++-.++.|||+..... ...+........+++++||.+ .+++..||.|.|||+... ..++.
T Consensus 471 ckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq----~~Vrq 546 (705)
T KOG0639|consen 471 CKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ----TLVRQ 546 (705)
T ss_pred eEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc----eeeec
Confidence 88877 8999999999999999976543 333334445688899999999 888999999999999754 47899
Q ss_pred eeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeCCCcEEEeeC
Q 013717 293 LEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVRIWQR 370 (437)
Q Consensus 293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~ 370 (437)
|++|...+.||.+++||..|.+|+.|++|+.||++.++..... .....|.++.+. +++|+.|.+++.+-|-..
T Consensus 547 fqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh-----dF~SQIfSLg~cP~~dWlavGMens~vevlh~ 621 (705)
T KOG0639|consen 547 FQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH-----DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHT 621 (705)
T ss_pred ccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh-----hhhhhheecccCCCccceeeecccCcEEEEec
Confidence 9999999999999999999999999999999999987643321 134567777655 459999999999998887
Q ss_pred CCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCCC
Q 013717 371 GSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNS 427 (437)
Q Consensus 371 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 427 (437)
...+ ...+.-|...|.++.|.+.+ +++++.|.|..+..|+...+....
T Consensus 622 skp~----kyqlhlheScVLSlKFa~cG-----kwfvStGkDnlLnawrtPyGasiF 669 (705)
T KOG0639|consen 622 SKPE----KYQLHLHESCVLSLKFAYCG-----KWFVSTGKDNLLNAWRTPYGASIF 669 (705)
T ss_pred CCcc----ceeecccccEEEEEEecccC-----ceeeecCchhhhhhccCcccccee
Confidence 7644 56677899999999999998 589999999999999988876543
No 150
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.90 E-value=4.5e-23 Score=162.84 Aligned_cols=284 Identities=14% Similarity=0.166 Sum_probs=197.1
Q ss_pred eeec-CccCCeEEEEee-CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC-eEEEEecCCeEEEE
Q 013717 92 SVQL-GHKLPIGCIAVH-HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG-KIFTAHQDCKIRVW 167 (437)
Q Consensus 92 ~~~~-~h~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~~~dg~i~iw 167 (437)
...+ +|.+.|+|+.|. .++|.+|..- .|++|++++.+......+ .|...|+.+...++ .+.+-+.|+.+.+|
T Consensus 7 ~fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~----~g~~~it~lq~~p~d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 7 FFVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRL----FGRLFITNLQSIPNDSLDTQGRDPLLILW 82 (323)
T ss_pred eeEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhh----hccceeeceeecCCcchhhcCCCceEEEE
Confidence 3345 999999999999 8889999988 999999999543333331 47889999998875 49999999999999
Q ss_pred eCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCC-c-----------EE
Q 013717 168 QLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDK-S-----------LK 235 (437)
Q Consensus 168 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg-~-----------i~ 235 (437)
++.-..... -|.-.++++.|.+.-+...+... . ++
T Consensus 83 ~ia~s~~i~---------------------------------i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h 129 (323)
T KOG0322|consen 83 TIAYSAFIS---------------------------------IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETH 129 (323)
T ss_pred EccCcceEE---------------------------------EeeeeccccccccceeccCCCcchhheecCCcccchhh
Confidence 998643221 13333444444332222221111 1 12
Q ss_pred EEECCCcceEEEee----cccccEEEEEEec-CCe---EEEEeCCCeEEEecCCCCccc------ceeeEEeeCccccEE
Q 013717 236 IWRASDLRCLESIK----AHEDAVNAVAVSA-GGT---VYTGSADRKIRVWAKPFNEKR------HALIATLEKHKSAVN 301 (437)
Q Consensus 236 iwd~~~~~~~~~~~----~~~~~v~~~~~~~-~~~---l~~~~~dg~v~iwd~~~~~~~------~~~~~~~~~~~~~i~ 301 (437)
+-|......+.... ...+.+.|..+.. ++. +++|..+|.+.+||+...... .+.......|..++.
T Consensus 130 ~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvl 209 (323)
T KOG0322|consen 130 KQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVL 209 (323)
T ss_pred hhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcce
Confidence 22221111111111 2345677777543 332 788999999999999765321 223334456889999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEECCCCccceEE--eeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeee
Q 013717 302 ALALSDDGTVLFSGACDRSILVWDREDSANHMVV--TGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCL 379 (437)
Q Consensus 302 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 379 (437)
++.|.+.-..=++|+.+..+..|++......... ...+......-..+.++++.+|+++.|++||||+.++.. ++
T Consensus 210 sldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~---pL 286 (323)
T KOG0322|consen 210 SLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN---PL 286 (323)
T ss_pred eeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC---ch
Confidence 9999987667778888889999998754222222 222222223336677888899999999999999999977 89
Q ss_pred eeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEee
Q 013717 380 AVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420 (437)
Q Consensus 380 ~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 420 (437)
..+.-|.+.|++++|+|+.+ +++++|.|++|-+|++
T Consensus 287 AVLkyHsagvn~vAfspd~~-----lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 287 AVLKYHSAGVNAVAFSPDCE-----LMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhhhcceeEEEeCCCCc-----hhhhccCCceEEeeec
Confidence 99999999999999999964 8999999999999986
No 151
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.90 E-value=9e-22 Score=173.67 Aligned_cols=210 Identities=16% Similarity=0.195 Sum_probs=152.4
Q ss_pred CcEEEEEeCC---CeEEEEECCCcEEEEECCCc-------ceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecC
Q 013717 213 DAVTGLAVNN---GLIYSVSWDKSLKIWRASDL-------RCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAK 280 (437)
Q Consensus 213 ~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~ 280 (437)
..|+++.|+| ..|++++.||.|++|.+..+ .....+..|...|+++.|+|-.. |++++.|-+|++||+
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl 707 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDL 707 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeeh
Confidence 4578888988 88999999999999998654 34556778999999999999655 999999999999999
Q ss_pred CCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEe
Q 013717 281 PFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGS 360 (437)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~ 360 (437)
+... ....+.+|.+.|..++|+|||+.+++.+.||+|++|+.++.+.....-....+..+.-.-++.++.++++.+
T Consensus 708 ~~~~----~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~G 783 (1012)
T KOG1445|consen 708 ANAK----LYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVG 783 (1012)
T ss_pred hhhh----hhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEec
Confidence 7654 456778999999999999999999999999999999998876544322222333333455666777777766
Q ss_pred CC----CcEEEeeCCCCCCeeeeeeecCCCCCeeEE-EEEccCCCCceEEEEEecCCCcEEEEeeccCCCCCCCee
Q 013717 361 AD----RTVRIWQRGSDGRFGCLAVLEGHTKPVKSL-TAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSSPLN 431 (437)
Q Consensus 361 ~d----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l-~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 431 (437)
.| ..|.+||..+-. ...+.+..-...+-.-+ .+.+|. +.++++|-.|..|.+|++-...|..-|++
T Consensus 784 fdk~SeRQv~~Y~Aq~l~-~~pl~t~~lDvaps~LvP~YD~Ds----~~lfltGKGD~~v~~yEv~~esPy~lpl~ 854 (1012)
T KOG1445|consen 784 FDKSSERQVQMYDAQTLD-LRPLYTQVLDVAPSPLVPHYDYDS----NVLFLTGKGDRFVNMYEVIYESPYLLPLA 854 (1012)
T ss_pred ccccchhhhhhhhhhhcc-CCcceeeeecccCccccccccCCC----ceEEEecCCCceEEEEEecCCCceeeecc
Confidence 65 468888876533 01222221111111111 122333 36899999999999999998887655543
No 152
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.90 E-value=2e-22 Score=177.79 Aligned_cols=147 Identities=18% Similarity=0.209 Sum_probs=117.9
Q ss_pred EeCCCeEEEecCCCCccccee-eEEeeCccccEEEEEEcc-CCCEEEEEeCCCcEEEEECCCCcc---ceEEeeeecccc
Q 013717 269 GSADRKIRVWAKPFNEKRHAL-IATLEKHKSAVNALALSD-DGTVLFSGACDRSILVWDREDSAN---HMVVTGALRGHG 343 (437)
Q Consensus 269 ~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~ 343 (437)
.+..|.|-||+++...+...- +-.+ .....|+.+.|.| |...|++++.||.|++|.+..+.. .......+.+|.
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~ 677 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHG 677 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeeccc
Confidence 445678888887643322111 1111 2456799999999 778999999999999999976532 233445678899
Q ss_pred cceEEEEeeCC---EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEee
Q 013717 344 KAILCLINVAG---LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420 (437)
Q Consensus 344 ~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 420 (437)
..|+++.|++- .|++++.|-+|++||+.+.+ ....+.+|.+.|.+++|+|++ +.+++.+.||+|++|+.
T Consensus 678 eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~---~~~~l~gHtdqIf~~AWSpdG-----r~~AtVcKDg~~rVy~P 749 (1012)
T KOG1445|consen 678 EKITSLRFHPLAADVLAVASYDSTIELWDLANAK---LYSRLVGHTDQIFGIAWSPDG-----RRIATVCKDGTLRVYEP 749 (1012)
T ss_pred ceEEEEEecchhhhHhhhhhccceeeeeehhhhh---hhheeccCcCceeEEEECCCC-----cceeeeecCceEEEeCC
Confidence 99999999975 99999999999999999877 778899999999999999999 47999999999999998
Q ss_pred ccCC
Q 013717 421 SVSC 424 (437)
Q Consensus 421 ~~~~ 424 (437)
...+
T Consensus 750 rs~e 753 (1012)
T KOG1445|consen 750 RSRE 753 (1012)
T ss_pred CCCC
Confidence 7764
No 153
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.8e-22 Score=164.13 Aligned_cols=273 Identities=16% Similarity=0.286 Sum_probs=190.6
Q ss_pred CEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC----CeEEEEecCCeEEEEeCCCCcccccccccCc
Q 013717 109 NFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD----GKIFTAHQDCKIRVWQLTPTKHHKLKTTLPT 183 (437)
Q Consensus 109 ~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 183 (437)
..+|++-.+ .|++||..+ .+.+..+ .++...++.+.|.+ +.+++|+.||+|++||++.......+..
T Consensus 41 ~~vav~lSngsv~lyd~~t--g~~l~~f---k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~--- 112 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT--GQLLEEF---KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISW--- 112 (376)
T ss_pred eeEEEEecCCeEEEEeccc--hhhhhee---cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheec---
Confidence 445666666 999999998 4556666 56777777888863 4499999999999999998765443331
Q ss_pred cccceeeecCCCCeeEEeeccceeeecCC-CcEEEEEeCC--CeEEEEE----CCCcEEEEECCCcce-EEEe-eccccc
Q 013717 184 VNDRLLRFMLPNSYVTVRRHKKKLWIEHG-DAVTGLAVNN--GLIYSVS----WDKSLKIWRASDLRC-LESI-KAHEDA 254 (437)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~--~~l~~~~----~dg~i~iwd~~~~~~-~~~~-~~~~~~ 254 (437)
..+. .+..+++.+- +.+++|. .+..|.+||++..+. +..+ ..|.+.
T Consensus 113 -------------------------~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DD 167 (376)
T KOG1188|consen 113 -------------------------TQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDD 167 (376)
T ss_pred -------------------------cCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCc
Confidence 1233 4666777753 6666664 467899999998766 5554 379999
Q ss_pred EEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCC-CEEEEEeCCCcEEEEECCCCcc
Q 013717 255 VNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDG-TVLFSGACDRSILVWDREDSAN 331 (437)
Q Consensus 255 v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~ 331 (437)
|+++.|+|... |++|+.||.|.+||+......-.++..+ .+...|.++.|..++ +.|.+-+..++..+|+++.+..
T Consensus 168 VT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 168 VTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred ceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence 99999999876 9999999999999998665444444444 478889999999877 4688888999999999998764
Q ss_pred ceEEeeeec---------ccccceEEEEeeC-CEEEE-EeCCCcEEEeeCC---CCCCeeeeeeecC-CCCCeeEEEEEc
Q 013717 332 HMVVTGALR---------GHGKAILCLINVA-GLLMS-GSADRTVRIWQRG---SDGRFGCLAVLEG-HTKPVKSLTAVT 396 (437)
Q Consensus 332 ~~~~~~~~~---------~~~~~i~~~~~~~-~~l~~-~~~dg~i~iwd~~---~~~~~~~~~~~~~-h~~~v~~l~~~~ 396 (437)
...+..... .-..-|.+..+.. +..+. |+.-|...++-+. ++.....+..+.+ |..-|+++.|..
T Consensus 247 ~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~ 326 (376)
T KOG1188|consen 247 ETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDV 326 (376)
T ss_pred hhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhc
Confidence 433322200 0011122222222 24444 4435666666443 3333446667777 667788888875
Q ss_pred cCCCCceEEEEEecCCCcEEEEee
Q 013717 397 EEGQNGVVSVFSGSLDGEIRAWQV 420 (437)
Q Consensus 397 ~~~~~~~~~l~s~~~dg~i~iw~~ 420 (437)
.+. +++|||+||.+.+|..
T Consensus 327 ~~~-----~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 327 KND-----VLYTGGEDGLLQAWKV 345 (376)
T ss_pred ccc-----eeeccCCCceEEEEec
Confidence 553 8999999999999995
No 154
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=4.5e-23 Score=193.66 Aligned_cols=265 Identities=16% Similarity=0.226 Sum_probs=204.2
Q ss_pred CCCceeEEecCCC---c--ceeeeecCccCCeEEEEee--CC----EEEEEecC-eEEEEeCCCC-ceeeeeccccCCCC
Q 013717 75 SPDETINFSSASH---L--CINSVQLGHKLPIGCIAVH--HN----FLYAASSH-EINVYDRTGT-TWTSINTFNDNDSS 141 (437)
Q Consensus 75 s~dg~i~~~~~~~---~--~~~~~~~~h~~~V~~l~~~--~~----~l~s~~~d-~v~vwd~~~~-~~~~~~~~~~~~~h 141 (437)
+.+.++.+|.++- . .+.+..+.-....+.|+|. +. +||.|.+| .|.+||...- .......+.....|
T Consensus 36 st~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h 115 (1049)
T KOG0307|consen 36 STSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKH 115 (1049)
T ss_pred ccccccceeeecccCccccccccccccccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhccc
Confidence 4455555555522 1 1344444667788999998 43 48888888 9999998762 12233333344779
Q ss_pred cccEEEEEEeCC---eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717 142 SGSVKSVTFCDG---KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL 218 (437)
Q Consensus 142 ~~~v~~l~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 218 (437)
.+.|..+.|++. .|++|+.||.|.|||++..+....... ....+.|.++
T Consensus 116 ~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~----------------------------~~~~~eI~~l 167 (1049)
T KOG0307|consen 116 TGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGS----------------------------QAPPSEIKCL 167 (1049)
T ss_pred CCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCC----------------------------CCCcccceEe
Confidence 999999999943 499999999999999987543222211 1255789999
Q ss_pred EeCC---CeEEEEECCCcEEEEECCCcceEEEeeccc--ccEEEEEEecCCe--EEEEeCC---CeEEEecCCCCcccce
Q 013717 219 AVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHE--DAVNAVAVSAGGT--VYTGSAD---RKIRVWAKPFNEKRHA 288 (437)
Q Consensus 219 ~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~--l~~~~~d---g~v~iwd~~~~~~~~~ 288 (437)
+|+. ..|++++.+|.+.|||++..+.+..+..+. ..+..++|+|+.. +++++.| -.|.+||++... .
T Consensus 168 sWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as---s 244 (1049)
T KOG0307|consen 168 SWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS---S 244 (1049)
T ss_pred ccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC---C
Confidence 9998 889999999999999999998887776443 3588999999986 7777775 469999998655 4
Q ss_pred eeEEeeCccccEEEEEEccCC-CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEEeCCCc
Q 013717 289 LIATLEKHKSAVNALALSDDG-TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGSADRT 364 (437)
Q Consensus 289 ~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~ 364 (437)
.++.+++|...|.++.|++.+ ++|++++.|+.|.+|+.++++ ....+.....++..+.|.+. .+++++-||.
T Consensus 245 P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE----vl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgk 320 (1049)
T KOG0307|consen 245 PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE----VLGELPAQGNWCFDVQWCPRNPSVMAAASFDGK 320 (1049)
T ss_pred chhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce----EeeecCCCCcceeeeeecCCCcchhhhheeccc
Confidence 667778999999999999965 899999999999999999887 55566667788888888865 8999999999
Q ss_pred EEEeeCCCCC
Q 013717 365 VRIWQRGSDG 374 (437)
Q Consensus 365 i~iwd~~~~~ 374 (437)
|.||.+....
T Consensus 321 I~I~sl~~~~ 330 (1049)
T KOG0307|consen 321 ISIYSLQGTD 330 (1049)
T ss_pred eeeeeeecCC
Confidence 9999988654
No 155
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=9.6e-22 Score=163.88 Aligned_cols=291 Identities=11% Similarity=0.147 Sum_probs=211.1
Q ss_pred CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeee-ecccc-CCCCcccEEEEEEe-CCe-EEEEecCCeEEEEe
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSI-NTFND-NDSSSGSVKSVTFC-DGK-IFTAHQDCKIRVWQ 168 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~-~~~~~-~~~h~~~v~~l~~~-~~~-l~s~~~dg~i~iwd 168 (437)
+|.+.|.++.|+ +++||+|++| .+++|+++.--.... +.+.. ...|...|.|++|. .+. +++|+.+++|.+-|
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD 133 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD 133 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence 999999999999 9999999999 999999875211111 11111 14577999999998 444 99999999999999
Q ss_pred CCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcc-eE
Q 013717 169 LTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLR-CL 245 (437)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-~~ 245 (437)
+++.+.+.....- ...+.|+.+..+| +.+++.+.+|.|.+||.+... .+
T Consensus 134 iEt~qsi~V~~~~----------------------------~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~ 185 (609)
T KOG4227|consen 134 IETKQSIYVANEN----------------------------NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPI 185 (609)
T ss_pred cccceeeeeeccc----------------------------CcccceeecccCCCCceEEEEecCceEEEEeccCCCCCC
Confidence 9988755443311 1345899999999 999999999999999998765 22
Q ss_pred E--EeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeC---ccccEEEEEEccCCCEEEEEeCC
Q 013717 246 E--SIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEK---HKSAVNALALSDDGTVLFSGACD 318 (437)
Q Consensus 246 ~--~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~d 318 (437)
. ...........+.|+|... |++.+..+-+.+||++......-....+.+ ....-..+.|+|+|+.|++--..
T Consensus 186 ~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~ 265 (609)
T KOG4227|consen 186 SLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRG 265 (609)
T ss_pred ceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhcc
Confidence 2 2223456678889999876 888899999999998754322111111222 22334688999999999988777
Q ss_pred CcEEEEECCCCccceEEeeeec--c--cccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCC------------------
Q 013717 319 RSILVWDREDSANHMVVTGALR--G--HGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGR------------------ 375 (437)
Q Consensus 319 g~i~i~d~~~~~~~~~~~~~~~--~--~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~------------------ 375 (437)
..-.+||+-+.++. ++..... + ....+.++.|-++ .+++|+.+-.|++|.+.....
T Consensus 266 ~~P~~~D~~S~R~~-V~k~D~N~~GY~N~~T~KS~~F~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~ 344 (609)
T KOG4227|consen 266 KCPLYFDFISQRCF-VLKSDHNPNGYCNIKTIKSMTFIDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEI 344 (609)
T ss_pred CCCEEeeeecccce-eEeccCCCCcceeeeeeeeeeeecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhh
Confidence 77778898765332 2222111 1 1234556667666 789999999999998754220
Q ss_pred --eeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEee
Q 013717 376 --FGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420 (437)
Q Consensus 376 --~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 420 (437)
...+..+++|..-++.+.|+|... +|++.|-...+++|.-
T Consensus 345 ~i~~~~~VLrGHRSv~NQVRF~~H~~-----~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 345 FIEKELTVLRGHRSVPNQVRFSQHNN-----LLVSSGVENSFKLWSD 386 (609)
T ss_pred eecceeEEEecccccccceeecCCcc-----eEeccchhhheecccc
Confidence 134678899999999999999874 7999999999999963
No 156
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.89 E-value=1.1e-21 Score=166.58 Aligned_cols=282 Identities=17% Similarity=0.191 Sum_probs=204.0
Q ss_pred cccceeeccccc--cccccCCCceeEEecC---CCcceeeeec-CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCC
Q 013717 58 SNLSLQTLPSVP--SLQKLSPDETINFSSA---SHLCINSVQL-GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGT 127 (437)
Q Consensus 58 ~~~~~~~~~~~~--~~~s~s~dg~i~~~~~---~~~~~~~~~~-~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~ 127 (437)
...+++|+|..+ .++.+..-|+|-+|++ .+...-+..+ .|..+|.+|.|+ ...+++.+.| +|++-|+++.
T Consensus 188 Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~ 267 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGN 267 (498)
T ss_pred ceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecch
Confidence 446899999887 6777778899999999 3444555555 999999999999 6778888888 9999999986
Q ss_pred ceeeeeccccCCCCcccEEEEEEeC-Ce-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccc
Q 013717 128 TWTSINTFNDNDSSSGSVKSVTFCD-GK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKK 205 (437)
Q Consensus 128 ~~~~~~~~~~~~~h~~~v~~l~~~~-~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (437)
..+.+... ......+..+.|+. +. ++.+..=|.+.+||.+++.......
T Consensus 268 i~e~v~s~---~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~-------------------------- 318 (498)
T KOG4328|consen 268 ISEEVLSL---DTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL-------------------------- 318 (498)
T ss_pred hhHHHhhc---CccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhh--------------------------
Confidence 55544443 33455677777773 33 8888888899999999875422211
Q ss_pred eeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEE----EeecccccEEEEEEecCCe-EEEEeCCCeEEE
Q 013717 206 KLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLE----SIKAHEDAVNAVAVSAGGT-VYTGSADRKIRV 277 (437)
Q Consensus 206 ~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~i 277 (437)
.-|...|..++++| .++++++.|++.+|||++...... ....|...|.+..|+|.+- |++.+.|..|+|
T Consensus 319 ---~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv 395 (498)
T KOG4328|consen 319 ---RLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRV 395 (498)
T ss_pred ---hhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEE
Confidence 23888999999998 899999999999999998653322 2236999999999999887 999999999999
Q ss_pred ecCCCCcccceeeEEeeC---cc--ccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee
Q 013717 278 WAKPFNEKRHALIATLEK---HK--SAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV 352 (437)
Q Consensus 278 wd~~~~~~~~~~~~~~~~---~~--~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 352 (437)
||...-.....+...+.. +. -......|.|+..++++|-.-..|-|||-..++....+.......-..+..+.+.
T Consensus 396 ~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~ 475 (498)
T KOG4328|consen 396 FDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPM 475 (498)
T ss_pred eecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeeccc
Confidence 987311111122222221 11 1245678999999999999999999999877664444332222222344555555
Q ss_pred CC-EEEEEeCCCcEEEeeCC
Q 013717 353 AG-LLMSGSADRTVRIWQRG 371 (437)
Q Consensus 353 ~~-~l~~~~~dg~i~iwd~~ 371 (437)
++ +++.++..|.|+||--+
T Consensus 476 ~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 476 RDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred ccceeccCCccceEEEEecC
Confidence 66 55555667889988654
No 157
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=5.6e-20 Score=163.02 Aligned_cols=274 Identities=14% Similarity=0.132 Sum_probs=182.9
Q ss_pred cccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEE-EEEecC-eEEEEeCCCCceeeeeccccCCCCccc
Q 013717 70 SLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFL-YAASSH-EINVYDRTGTTWTSINTFNDNDSSSGS 144 (437)
Q Consensus 70 ~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l-~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~ 144 (437)
.+++.+.|+.+.+|+..... +...+ +| ..+.+++|+ ++.+ ++++.+ .|++||..+++. ...+ ..+ ..
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~-~~~~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~--~~~~---~~~-~~ 74 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLE-VTRTFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV--IGTL---PSG-PD 74 (300)
T ss_pred EEEEecCCCEEEEEECCCCc-eEEEEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE--EEec---cCC-CC
Confidence 46677889999999986543 45555 44 346788998 6666 566667 999999988533 3333 122 23
Q ss_pred EEEEEEeCCe--E-EEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717 145 VKSVTFCDGK--I-FTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN 221 (437)
Q Consensus 145 v~~l~~~~~~--l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 221 (437)
+..++|+++. + ++++.|+.|++||+.+.+....+. +...+.+++++
T Consensus 75 ~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~-------------------------------~~~~~~~~~~~ 123 (300)
T TIGR03866 75 PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP-------------------------------VGVEPEGMAVS 123 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee-------------------------------CCCCcceEEEC
Confidence 5678888664 4 445668999999998764332221 22345678888
Q ss_pred C--CeEEEEECCC-cEEEEECCCcceEEEeecccccEEEEEEecCCe-EE-EEeCCCeEEEecCCCCcccceeeEEeeCc
Q 013717 222 N--GLIYSVSWDK-SLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VY-TGSADRKIRVWAKPFNEKRHALIATLEKH 296 (437)
Q Consensus 222 ~--~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 296 (437)
+ .+++++..++ .+.+||..+++....+. ......+++|+|++. ++ ++..++.|++||+.... .+..+..+
T Consensus 124 ~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~----~~~~~~~~ 198 (300)
T TIGR03866 124 PDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK----VIKKITFE 198 (300)
T ss_pred CCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce----eeeeeeec
Confidence 7 6777777665 56788998887766554 234567899999998 54 44569999999987543 22222211
Q ss_pred -------cccEEEEEEccCCCEEEEE-eCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEE-eCCCcE
Q 013717 297 -------KSAVNALALSDDGTVLFSG-ACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSG-SADRTV 365 (437)
Q Consensus 297 -------~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~-~~dg~i 365 (437)
......++|+|++++++++ ..++.+.+||+++++..... . +...+.++.++ +++|+++ +.+|.|
T Consensus 199 ~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~---~--~~~~~~~~~~~~~g~~l~~~~~~~~~i 273 (300)
T TIGR03866 199 IPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL---L--VGQRVWQLAFTPDEKYLLTTNGVSNDV 273 (300)
T ss_pred ccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE---E--eCCCcceEEECCCCCEEEEEcCCCCeE
Confidence 1124568899999986554 45678999999876532211 1 23356666665 4577765 568999
Q ss_pred EEeeCCCCCCeeeeeeecCCCCCeeEEEEEc
Q 013717 366 RIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT 396 (437)
Q Consensus 366 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~ 396 (437)
++||+.+++ ++..+... ...+.++++|
T Consensus 274 ~v~d~~~~~---~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 274 SVIDVAALK---VIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred EEEECCCCc---EEEEEEcc-cccceeEeCC
Confidence 999999876 66666644 4558887764
No 158
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.89 E-value=2e-21 Score=166.65 Aligned_cols=269 Identities=15% Similarity=0.164 Sum_probs=190.1
Q ss_pred CEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EE--EEecCCeEEEEeCCCCcccccccccCccc
Q 013717 109 NFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IF--TAHQDCKIRVWQLTPTKHHKLKTTLPTVN 185 (437)
Q Consensus 109 ~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~--s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 185 (437)
++.+..+.|.+++||.... .....+..+. ..-.+.+++|.... |+ +.+.|..|++|.-.... ..+..+.
T Consensus 4 Nl~~aS~gd~~kl~D~s~~--~~~~~~~~~t-~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~--~~Vp~~~--- 75 (673)
T KOG4378|consen 4 NLHVASTGDKTKLSDFSDL--ETKSEYVHQT-AEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKT--PEVPRVR--- 75 (673)
T ss_pred ceeeeccCCceEEeecccc--cCccccccCC-CCCcceeeeccccceEEEeecCCceeEEEecccCCC--Cccceee---
Confidence 3445555559999999873 2222222111 22348999998554 44 44678889999755331 1110000
Q ss_pred cceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecC
Q 013717 186 DRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAG 263 (437)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 263 (437)
......-.|++... .++++|+..+.|+|||++...+.+.++.|...|+++.++-.
T Consensus 76 -----------------------k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~ 132 (673)
T KOG4378|consen 76 -----------------------KLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNT 132 (673)
T ss_pred -----------------------ccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCC
Confidence 00111222333322 89999999999999999988888888999999999999876
Q ss_pred Ce-EEEEeCCCeEEEecCCCCcccceeeEEeeCc-cccEEEEEEccCCC-EEEEEeCCCcEEEEECCCCccceEEeeeec
Q 013717 264 GT-VYTGSADRKIRVWAKPFNEKRHALIATLEKH-KSAVNALALSDDGT-VLFSGACDRSILVWDREDSANHMVVTGALR 340 (437)
Q Consensus 264 ~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 340 (437)
.. ||+++..|.|.|-.+.++.. ...+... ...+.-+.|+|..+ +|.+++.+|.|.+||+......... ..
T Consensus 133 DeyiAsvs~gGdiiih~~~t~~~----tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~---~~ 205 (673)
T KOG4378|consen 133 DEYIASVSDGGDIIIHGTKTKQK----TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA---SE 205 (673)
T ss_pred cceeEEeccCCcEEEEecccCcc----ccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccch---hh
Confidence 66 99999999999997766543 2333333 45567899999766 5667889999999999866543333 45
Q ss_pred ccccceEEEEeeCC---EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEE
Q 013717 341 GHGKAILCLINVAG---LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRA 417 (437)
Q Consensus 341 ~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i 417 (437)
.|..+...++|++. +|++.+.|..|.+||..... ....+. ...+...++|.+++ .+|+.|...|.|..
T Consensus 206 ~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~---s~~~l~-y~~Plstvaf~~~G-----~~L~aG~s~G~~i~ 276 (673)
T KOG4378|consen 206 AHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA---STDRLT-YSHPLSTVAFSECG-----TYLCAGNSKGELIA 276 (673)
T ss_pred hccCCcCcceecCCccceEEEecccceEEEeeccccc---ccceee-ecCCcceeeecCCc-----eEEEeecCCceEEE
Confidence 67777766666543 99999999999999999755 333333 45689999999998 48999999999999
Q ss_pred EeeccCC
Q 013717 418 WQVSVSC 424 (437)
Q Consensus 418 w~~~~~~ 424 (437)
||++..+
T Consensus 277 YD~R~~k 283 (673)
T KOG4378|consen 277 YDMRSTK 283 (673)
T ss_pred EecccCC
Confidence 9999764
No 159
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=3.4e-22 Score=187.79 Aligned_cols=243 Identities=19% Similarity=0.261 Sum_probs=191.1
Q ss_pred CcccEEEEEEeC--C---e-EEEEecCCeEEEEeCCCC---cccccccccCccccceeeecCCCCeeEEeeccceeeecC
Q 013717 141 SSGSVKSVTFCD--G---K-IFTAHQDCKIRVWQLTPT---KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH 211 (437)
Q Consensus 141 h~~~v~~l~~~~--~---~-l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (437)
-....+.++|.+ + + |+.|..||.|.+||...- .....+.. ...|
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~---------------------------~~~h 115 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLAT---------------------------KSKH 115 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhh---------------------------hccc
Confidence 456788999972 2 2 778889999999998753 22222221 1359
Q ss_pred CCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEee--cccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCc
Q 013717 212 GDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIK--AHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNE 284 (437)
Q Consensus 212 ~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~ 284 (437)
.+.|..+.|++ +.|++|+.||.|.|||+...+.-.... ...+.|.+++|+..-. |++++.+|.+.|||++.+.
T Consensus 116 ~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~ 195 (1049)
T KOG0307|consen 116 TGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK 195 (1049)
T ss_pred CCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC
Confidence 99999999998 799999999999999998865544442 2467899999997665 8999999999999998653
Q ss_pred ccceeeEEeeCcc--ccEEEEEEccCCC-EEEEEeCCC---cEEEEECCCCccceEEeeeecccccceEEEEeeCC---E
Q 013717 285 KRHALIATLEKHK--SAVNALALSDDGT-VLFSGACDR---SILVWDREDSANHMVVTGALRGHGKAILCLINVAG---L 355 (437)
Q Consensus 285 ~~~~~~~~~~~~~--~~i~~~~~~~~~~-~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~ 355 (437)
.+..+..+. ..+..++|+|++. .|++++.|. .|.+||++.... ....+.+|...|.+++|.+. +
T Consensus 196 ----pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass---P~k~~~~H~~GilslsWc~~D~~l 268 (1049)
T KOG0307|consen 196 ----PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS---PLKILEGHQRGILSLSWCPQDPRL 268 (1049)
T ss_pred ----cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC---chhhhcccccceeeeccCCCCchh
Confidence 233333333 4578999999764 666666543 689999985543 33446789999999999854 9
Q ss_pred EEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 356 LMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 356 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
|++++.|+.|.+|+.++++ .+..+....+.+..+.|+|..+. +++.++.||.|-|+.+....
T Consensus 269 llSsgkD~~ii~wN~~tgE---vl~~~p~~~nW~fdv~w~pr~P~----~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 269 LLSSGKDNRIICWNPNTGE---VLGELPAQGNWCFDVQWCPRNPS----VMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred hhcccCCCCeeEecCCCce---EeeecCCCCcceeeeeecCCCcc----hhhhheeccceeeeeeecCC
Confidence 9999999999999999987 78888888899999999999875 79999999999999998765
No 160
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.88 E-value=4.4e-20 Score=148.09 Aligned_cols=290 Identities=13% Similarity=0.131 Sum_probs=202.2
Q ss_pred eeecCccCCeEEEEee-----CCEEEEEec----C-eEEEEeCC--CCceeeeeccccCCCCcccEEEEEEeCCe-----
Q 013717 92 SVQLGHKLPIGCIAVH-----HNFLYAASS----H-EINVYDRT--GTTWTSINTFNDNDSSSGSVKSVTFCDGK----- 154 (437)
Q Consensus 92 ~~~~~h~~~V~~l~~~-----~~~l~s~~~----d-~v~vwd~~--~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----- 154 (437)
+..+...-++.++.|+ +.+||.|+- . .|.|-.++ +++......+ .|.-+++.+.|.|+.
T Consensus 38 iy~Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~f----d~~YP~tK~~wiPd~~g~~p 113 (364)
T KOG0290|consen 38 IYTYNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANF----DHPYPVTKLMWIPDSKGVYP 113 (364)
T ss_pred EEEecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCC----CCCCCccceEecCCccccCc
Confidence 3334555678888888 678898882 2 56665554 3333333333 699999999998654
Q ss_pred -EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEEC
Q 013717 155 -IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSW 230 (437)
Q Consensus 155 -l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~ 230 (437)
|++.+ +..+|+|.+...+........-.. ..-..+..+++++.|+. +++.+.+-
T Consensus 114 dlLATs-~D~LRlWri~~ee~~~~~~~~L~~---------------------~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 114 DLLATS-SDFLRLWRIGDEESRVELQSVLNN---------------------NKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred chhhcc-cCeEEEEeccCcCCceehhhhhcc---------------------CcccccCCcccccccccCCcceeEeecc
Confidence 33333 347999999854322111111000 00124678999999986 99999999
Q ss_pred CCcEEEEECCCcce---EEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEE
Q 013717 231 DKSLKIWRASDLRC---LESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALAL 305 (437)
Q Consensus 231 dg~i~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 305 (437)
|-+..|||++++.. ...+-.|..+|..++|..++. |++.+.||.||+||++... ....+.+-.....+...++|
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le-HSTIIYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE-HSTIIYEDPSPSTPLLRLSW 250 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccc-cceEEecCCCCCCcceeecc
Confidence 99999999998733 455668999999999999776 9999999999999998543 22333333333567889999
Q ss_pred ccC-CCEEEEEeC-CCcEEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEEeCCCcEEEeeCCCCCC---ee
Q 013717 306 SDD-GTVLFSGAC-DRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGSADRTVRIWQRGSDGR---FG 377 (437)
Q Consensus 306 ~~~-~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~---~~ 377 (437)
++. -+++++-.. ...|.|.|++... .....+++|.+.|..++|.+. .|++++.|..+.|||+....+ ..
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~---tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~d 327 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPC---TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGED 327 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCC---cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCC
Confidence 984 467776554 4579999998654 355668899999999999865 999999999999999986442 11
Q ss_pred eeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEE
Q 013717 378 CLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRA 417 (437)
Q Consensus 378 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i 417 (437)
++..+. -.+.|+.+.|++..+. .++.+.. .++.+
T Consensus 328 Pilay~-a~~EVNqi~Ws~~~~D----wiai~~~-kklei 361 (364)
T KOG0290|consen 328 PILAYT-AGGEVNQIQWSSSQPD----WIAICFG-KKLEI 361 (364)
T ss_pred chhhhh-ccceeeeeeecccCCC----EEEEEec-CeeeE
Confidence 222222 4578999999987765 6666654 34444
No 161
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.87 E-value=5.9e-20 Score=171.15 Aligned_cols=294 Identities=20% Similarity=0.295 Sum_probs=198.7
Q ss_pred eEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe----EEEEecCCeEEEEeCCCC-
Q 013717 101 IGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK----IFTAHQDCKIRVWQLTPT- 172 (437)
Q Consensus 101 V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----l~s~~~dg~i~iwd~~~~- 172 (437)
-..+.|+ ...++++.+. .|+|||.+.+ +.+..|.........|+.+.+.++. +++|+.||.|+||+--..
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~--~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKG--RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccC--ceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 4455666 6778888866 9999999984 4566665445566789999997543 999999999999974322
Q ss_pred -cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee
Q 013717 173 -KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK 249 (437)
Q Consensus 173 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~ 249 (437)
+..+......+..+ ...+..+.=.-+.|.. ++|++++.-..|+|||.....+...+.
T Consensus 1145 ~~~~eLVTaw~~Ls~--------------------~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP 1204 (1387)
T KOG1517|consen 1145 WKKPELVTAWSSLSD--------------------QLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIP 1204 (1387)
T ss_pred cCCceeEEeeccccc--------------------cCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecc
Confidence 11111111111000 0011111112345554 788888888999999999888777775
Q ss_pred -cccccEEEEEEec-CCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCcccc--EEEEEEccCCC-EEEEEeCCCcEEE
Q 013717 250 -AHEDAVNAVAVSA-GGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSA--VNALALSDDGT-VLFSGACDRSILV 323 (437)
Q Consensus 250 -~~~~~v~~~~~~~-~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~-~l~~~~~dg~i~i 323 (437)
+.+.-|+++.-+- .|. +++|..||.|++||.+..... ..+...+.|... |..+.+-+.|- .|++|+.||.|++
T Consensus 1205 ~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d-s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~ 1283 (1387)
T KOG1517|consen 1205 YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD-SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQL 1283 (1387)
T ss_pred cCCCccceeecccccCCceEEEeecCCceEEeecccCCcc-ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEE
Confidence 4455677776543 345 999999999999999865433 456677778877 99999998765 5999999999999
Q ss_pred EECCCCccceEEeeee-cccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeee----eecCCCCCeeEEEEEc
Q 013717 324 WDREDSANHMVVTGAL-RGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLA----VLEGHTKPVKSLTAVT 396 (437)
Q Consensus 324 ~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~h~~~v~~l~~~~ 396 (437)
||++.......+.... ....+..+++..+.. .+|+|+. +.|+||++..... ..+. .+....+.+.+++|+|
T Consensus 1284 ~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l-~~~k~n~~F~~q~~gs~scL~FHP 1361 (1387)
T KOG1517|consen 1284 LDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL-NIIKYNPGFMGQRIGSVSCLAFHP 1361 (1387)
T ss_pred EecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh-cccccCcccccCcCCCcceeeecc
Confidence 9999842211111111 111224677776654 8898888 9999999986431 1111 1112345789999999
Q ss_pred cCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 397 EEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 397 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
..- ++++|+.|.+|.||..+.+.
T Consensus 1362 ~~~-----llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1362 HRL-----LLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hhH-----hhhhccCCceEEEeecCCcC
Confidence 873 68999999999999887653
No 162
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.2e-21 Score=166.10 Aligned_cols=295 Identities=19% Similarity=0.262 Sum_probs=220.1
Q ss_pred eeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC---Ce-EEEEecCCe
Q 013717 92 SVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD---GK-IFTAHQDCK 163 (437)
Q Consensus 92 ~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~-l~s~~~dg~ 163 (437)
...| +|.+.|..+.|+ |..|++|++| .|.+||+..+.. ...+ ..+|...|..-.|.| +. +++++.||.
T Consensus 135 ~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~--~l~f--~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq 210 (559)
T KOG1334|consen 135 QKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSP--KLSF--ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ 210 (559)
T ss_pred hhcccCCCCccceeeecccCceeeccCccceEEeehhhccCc--cccc--ccccccchhhhhccCCCCCcCceeccccCc
Confidence 3445 899999999999 9999999999 999999988532 2222 267999998888864 34 999999999
Q ss_pred EEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECC
Q 013717 164 IRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRAS 240 (437)
Q Consensus 164 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~ 240 (437)
+++=.+......... +.+..|.++|..++..| ..|++++.|+.+.-+|++
T Consensus 211 vr~s~i~~t~~~e~t---------------------------~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr 263 (559)
T KOG1334|consen 211 VRVSEILETGYVENT---------------------------KRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLR 263 (559)
T ss_pred eeeeeeccccceecc---------------------------eecccccCccceeeecCCCCCcccccccccceeeeeec
Confidence 999776543322211 12235999999999877 889999999999999998
Q ss_pred CcceEEEee---cccc---cEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccc--eeeEEee------CccccEEEEE
Q 013717 241 DLRCLESIK---AHED---AVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRH--ALIATLE------KHKSAVNALA 304 (437)
Q Consensus 241 ~~~~~~~~~---~~~~---~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~------~~~~~i~~~~ 304 (437)
.......+. .+.. ....++..|.+. +++|+.|..+++||.+.-.... ..+..+. .....|++++
T Consensus 264 ~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~ 343 (559)
T KOG1334|consen 264 QDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLV 343 (559)
T ss_pred cCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEE
Confidence 876544332 3333 578889988775 9999999999999976432210 1112221 2345799999
Q ss_pred EccCCCEEEEEeCCCcEEEEECCCCcc--c-------eEEeeeeccccc--ceEEEEeeC---CEEEEEeCCCcEEEeeC
Q 013717 305 LSDDGTVLFSGACDRSILVWDREDSAN--H-------MVVTGALRGHGK--AILCLINVA---GLLMSGSADRTVRIWQR 370 (437)
Q Consensus 305 ~~~~~~~l~~~~~dg~i~i~d~~~~~~--~-------~~~~~~~~~~~~--~i~~~~~~~---~~l~~~~~dg~i~iwd~ 370 (437)
|+.++.-|+++..|-.|+++.-..+.. + ......+++|.. .|..+-|-| +|+++|+.-|.|.||+-
T Consensus 344 Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K 423 (559)
T KOG1334|consen 344 YSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDK 423 (559)
T ss_pred ecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEec
Confidence 999888888888899999996443221 0 112222566643 466666665 49999999999999999
Q ss_pred CCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 371 GSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 371 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
.+++ .+..+.+-..-|+||.-+|..+ +|++.|-|..|+||-..+.+.
T Consensus 424 ~t~e---ii~~MegDr~VVNCLEpHP~~P-----vLAsSGid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 424 KTGE---IIRFMEGDRHVVNCLEPHPHLP-----VLASSGIDHDVKIWTPLTAER 470 (559)
T ss_pred chhH---HHHHhhcccceEeccCCCCCCc-----hhhccCCccceeeecCCcccc
Confidence 9877 7888888777999999999886 799999999999998755443
No 163
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=7.5e-20 Score=148.42 Aligned_cols=278 Identities=16% Similarity=0.180 Sum_probs=198.1
Q ss_pred ccceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeec
Q 013717 59 NLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINT 134 (437)
Q Consensus 59 ~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~ 134 (437)
....+|.+-...++.+..||.+.+||..... ..+.+ +|..+|+|++|+ |+.|++++.| .|.+||+..|.. +..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~--l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP--LKR 102 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc--eeE
Confidence 4578999999999999999999999998755 55556 999999999999 9999999999 999999999753 333
Q ss_pred cccCCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC
Q 013717 135 FNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH 211 (437)
Q Consensus 135 ~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (437)
+ ....+|....|.|.. .++.-.+..-.+-++............+ +. -
T Consensus 103 i----rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d-------------~d-------------l 152 (405)
T KOG1273|consen 103 I----RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDD-------------GD-------------L 152 (405)
T ss_pred E----EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCc-------------cc-------------c
Confidence 3 257899999999643 4444444445555555432111111000 00 0
Q ss_pred CCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeeccc-ccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcc--
Q 013717 212 GDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHE-DAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEK-- 285 (437)
Q Consensus 212 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~-- 285 (437)
.....+..|++ +++++|...|.+.++|..+.+++..++... ..|..+.++..|+ |+.-+.|..|+.|++..-..
T Consensus 153 n~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~ 232 (405)
T KOG1273|consen 153 NSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEG 232 (405)
T ss_pred ccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccC
Confidence 00111123444 999999999999999999999999988665 7899999999998 99999999999998752111
Q ss_pred ---cceeeEEeeC--ccccEEEEEEccCCCEEEEEeC-CCcEEEEECCCCccceEEeeeecccc-cceEEEEeeCC--EE
Q 013717 286 ---RHALIATLEK--HKSAVNALALSDDGTVLFSGAC-DRSILVWDREDSANHMVVTGALRGHG-KAILCLINVAG--LL 356 (437)
Q Consensus 286 ---~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~--~l 356 (437)
..++.+.++. ...+-.+++|+.+|.|+++++. -..++||.-..|. +...+.|.. .....+.|++- .+
T Consensus 233 r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~Gs----LVKILhG~kgE~l~DV~whp~rp~i 308 (405)
T KOG1273|consen 233 RDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGS----LVKILHGTKGEELLDVNWHPVRPII 308 (405)
T ss_pred ccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcc----eeeeecCCchhheeecccccceeee
Confidence 1111111111 2234568899999999988764 4579999988776 444445544 45567777776 44
Q ss_pred EEEeCCCcEEEeeCCCCC
Q 013717 357 MSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 357 ~~~~~dg~i~iwd~~~~~ 374 (437)
++- ..|.++||......
T Consensus 309 ~si-~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 309 ASI-ASGVVYIWAVVQVE 325 (405)
T ss_pred eec-cCCceEEEEeeccc
Confidence 444 77899999876544
No 164
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=3.8e-20 Score=150.64 Aligned_cols=267 Identities=18% Similarity=0.256 Sum_probs=193.2
Q ss_pred EEEEee--CCEEEEEecC-eEEEEeCCCCcee----------eeeccccCCCCcccEEEEEEe-------CCe--EEEEe
Q 013717 102 GCIAVH--HNFLYAASSH-EINVYDRTGTTWT----------SINTFNDNDSSSGSVKSVTFC-------DGK--IFTAH 159 (437)
Q Consensus 102 ~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~----------~~~~~~~~~~h~~~v~~l~~~-------~~~--l~s~~ 159 (437)
..+.|+ |..|.+-+.| .+++|++...... ....++ ......|...+|. |+. +++.+
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r--~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYR--YQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEE--eccCCEEEEEEeeeccccCCCccceeeecc
Confidence 445677 8889999999 9999998642110 011111 1234677777775 333 88889
Q ss_pred cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcE---EEEEeCC-CeEEEEECCCcEE
Q 013717 160 QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAV---TGLAVNN-GLIYSVSWDKSLK 235 (437)
Q Consensus 160 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~~~-~~l~~~~~dg~i~ 235 (437)
.+.-|++||.-+++......... |..++ .+++|+| ..-+.++....|+
T Consensus 131 r~~PIh~wdaftG~lraSy~~yd----------------------------h~de~taAhsL~Fs~DGeqlfaGykrcir 182 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYD----------------------------HQDEYTAAHSLQFSPDGEQLFAGYKRCIR 182 (406)
T ss_pred ccCceeeeeccccccccchhhhh----------------------------hHHhhhhheeEEecCCCCeEeecccceEE
Confidence 99999999999998776665432 44433 4789998 4444456678999
Q ss_pred EEEC-CCcceEEEe-------ecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEE
Q 013717 236 IWRA-SDLRCLESI-------KAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALAL 305 (437)
Q Consensus 236 iwd~-~~~~~~~~~-------~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~ 305 (437)
+||+ +.|+....+ .+..+-|.+++|+|-.. +++|+....+-||. .....++..+-+|.+.|+.+.|
T Consensus 183 vFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~----~~~~~pl~llggh~gGvThL~~ 258 (406)
T KOG2919|consen 183 VFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYN----DDGRRPLQLLGGHGGGVTHLQW 258 (406)
T ss_pred EeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEe----cCCCCceeeecccCCCeeeEEe
Confidence 9999 555432211 13467899999999665 99999999998884 3344577778899999999999
Q ss_pred ccCCCEEEEEeC-CCcEEEEECCCCccceEEeeeeccccc----ce-EEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeee
Q 013717 306 SDDGTVLFSGAC-DRSILVWDREDSANHMVVTGALRGHGK----AI-LCLINVAGLLMSGSADRTVRIWQRGSDGRFGCL 379 (437)
Q Consensus 306 ~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~----~i-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 379 (437)
.++|+.|++|.. |..|.+||++..+..... +..|.. .| ..+...+++|++|+.||.|++||++... ..+
T Consensus 259 ~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~---L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g--n~~ 333 (406)
T KOG2919|consen 259 CEDGNKLFSGARKDDKILCWDIRYSRDPVYA---LERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG--NEV 333 (406)
T ss_pred ccCcCeecccccCCCeEEEEeehhccchhhh---hhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCC--Ccc
Confidence 999999999876 778999999865443322 233333 22 4455567799999999999999999844 256
Q ss_pred eeecCCCCCeeEEEEEccCCCCceEEEEEecCC
Q 013717 380 AVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLD 412 (437)
Q Consensus 380 ~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d 412 (437)
..+..|...++.++++|..+ ++++++..
T Consensus 334 sv~~~~sd~vNgvslnP~mp-----ilatssGq 361 (406)
T KOG2919|consen 334 SVTGNYSDTVNGVSLNPIMP-----ILATSSGQ 361 (406)
T ss_pred cccccccccccceecCcccc-----eeeeccCc
Confidence 77788999999999999874 67776643
No 165
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.86 E-value=9.4e-20 Score=146.10 Aligned_cols=295 Identities=16% Similarity=0.194 Sum_probs=202.5
Q ss_pred CCceeEEecC--CCcceeeeec-CccCCeEEEEee---CCEEEEEecC--------eEEEEeCCCCc-------eeeeec
Q 013717 76 PDETINFSSA--SHLCINSVQL-GHKLPIGCIAVH---HNFLYAASSH--------EINVYDRTGTT-------WTSINT 134 (437)
Q Consensus 76 ~dg~i~~~~~--~~~~~~~~~~-~h~~~V~~l~~~---~~~l~s~~~d--------~v~vwd~~~~~-------~~~~~~ 134 (437)
.|..|.+... .........| .|.+.|..++-+ .+.|+++..+ .+.||.+.... ++.+..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 4555555444 3334444555 889999999987 6777776542 47899987631 122222
Q ss_pred cccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC
Q 013717 135 FNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG 212 (437)
Q Consensus 135 ~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (437)
+. ..+-+.|.|+.|.|+. +++-. |..|.+|+++....+......+. -.++.
T Consensus 118 Ld--teavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~------------------------s~e~~ 170 (370)
T KOG1007|consen 118 LD--TEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSE------------------------SAEMR 170 (370)
T ss_pred CC--HHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccc------------------------ccccc
Confidence 21 1455699999999876 55554 88999999987764311110000 01255
Q ss_pred CcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEee-cccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCccc
Q 013717 213 DAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIK-AHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKR 286 (437)
Q Consensus 213 ~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~ 286 (437)
...++-+|+| ...+....|+++..||+++.++...+. .|...|..+.|+|+.. |++|+.||.|++||.+...
T Consensus 171 ~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk-- 248 (370)
T KOG1007|consen 171 HSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK-- 248 (370)
T ss_pred ceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC--
Confidence 6677788888 444555678999999999988877775 7888999999999887 9999999999999987544
Q ss_pred ceeeEEeeCccccEEEEEEccC-CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcE
Q 013717 287 HALIATLEKHKSAVNALALSDD-GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTV 365 (437)
Q Consensus 287 ~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i 365 (437)
.++..+.+|...+.++.|+|. .++|++|+.|..|.+|...+-.....+......... -..|..=
T Consensus 249 -~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~--------------e~~dsee 313 (370)
T KOG1007|consen 249 -FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESES--------------EDEDSEE 313 (370)
T ss_pred -ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccC--------------cchhhHH
Confidence 578888999999999999994 568899999999999987543221111110000000 0001100
Q ss_pred EEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717 366 RIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 366 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
|+=-+.. ..+.++..|.+.|.+++|+..++. ++++-+.||++.|=++..
T Consensus 314 r~kpL~d----g~l~tydehEDSVY~~aWSsadPW----iFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 314 RVKPLQD----GQLETYDEHEDSVYALAWSSADPW----IFASLSYDGRVIISSVPR 362 (370)
T ss_pred hcccccc----cccccccccccceEEEeeccCCCe----eEEEeccCceEEeecCCh
Confidence 1001121 256788899999999999998886 899999999998866643
No 166
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.86 E-value=9.7e-21 Score=154.35 Aligned_cols=255 Identities=18% Similarity=0.198 Sum_probs=184.7
Q ss_pred ccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCC
Q 013717 67 SVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSS 141 (437)
Q Consensus 67 ~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h 141 (437)
..+.++.++.-|.|++.+... .++...+ ||...|+.+.+. .++++++|.| .|++|++++ ..++..+...++|
T Consensus 104 ~~p~la~~G~~GvIrVid~~~-~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~--~~Cv~VfGG~egH 180 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVS-GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT--DVCVAVFGGVEGH 180 (385)
T ss_pred CCeeEEeecceeEEEEEecch-hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC--CeEEEEecccccc
Confidence 456788888999999999877 4555555 999999999999 6799999999 999999999 5778888888999
Q ss_pred cccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCcc-ccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717 142 SGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTV-NDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL 218 (437)
Q Consensus 142 ~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 218 (437)
.+.|.++.|+.+. +++++.|..|++|++...+....+...... +......+.... ..+... ..-.-|...|-|+
T Consensus 181 rdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~-~~fp~f--st~diHrnyVDCv 257 (385)
T KOG1034|consen 181 RDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPK-THFPDF--STTDIHRNYVDCV 257 (385)
T ss_pred cCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccc-cccccc--cccccccchHHHH
Confidence 9999999999544 999999999999999865543332211000 000000000000 000000 0112488999999
Q ss_pred EeCCCeEEEEECCCcEEEEECC-Ccc-------------eEEEeecccccEEEEEEe--cCCe-EEEEeCCCeEEEecCC
Q 013717 219 AVNNGLIYSVSWDKSLKIWRAS-DLR-------------CLESIKAHEDAVNAVAVS--AGGT-VYTGSADRKIRVWAKP 281 (437)
Q Consensus 219 ~~~~~~l~~~~~dg~i~iwd~~-~~~-------------~~~~~~~~~~~v~~~~~~--~~~~-l~~~~~dg~v~iwd~~ 281 (437)
.|-.+++++-+-++.|..|..- -.+ .+..+.-....|+-+.|. |-++ ||.|...|.|.+||++
T Consensus 258 rw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~ 337 (385)
T KOG1034|consen 258 RWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLD 337 (385)
T ss_pred HHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECC
Confidence 9999999999999999999872 111 123333345567777664 4455 9999999999999998
Q ss_pred CCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECC
Q 013717 282 FNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327 (437)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (437)
..................|...+|+.||..|+..+.|++|.-||..
T Consensus 338 ~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 338 NNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 7665322222233345789999999999999999999999999863
No 167
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.4e-19 Score=147.14 Aligned_cols=275 Identities=20% Similarity=0.217 Sum_probs=190.9
Q ss_pred cceeeccccccccccCCCceeEEecCCCcc----eeeeecCccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCce-e
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLC----INSVQLGHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTW-T 130 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~----~~~~~~~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~-~ 130 (437)
..+.|......+++.+.|+.|++|+..... .+++.--.-+--+.++|. ...+++.-.+ .+++|.+...+. .
T Consensus 90 t~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~ 169 (420)
T KOG2096|consen 90 TDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGS 169 (420)
T ss_pred eeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCC
Confidence 478999999999999999999999995432 222222112245777887 5566666666 999998764211 0
Q ss_pred ------eeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEee
Q 013717 131 ------SINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRR 202 (437)
Q Consensus 131 ------~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (437)
....+...+.|.-.|..+-..++. +.+++.|.+|.+|++. ++.+..+.+
T Consensus 170 ~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt---------------------- 226 (420)
T KOG2096|consen 170 GSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT---------------------- 226 (420)
T ss_pred CCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc----------------------
Confidence 011111113466677777776554 8999999999999998 655444332
Q ss_pred ccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECC---Cc-----ceEEEeecccccEEEEEEecCCe-EEEEeC
Q 013717 203 HKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRAS---DL-----RCLESIKAHEDAVNAVAVSAGGT-VYTGSA 271 (437)
Q Consensus 203 ~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~---~~-----~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~ 271 (437)
....-+..+++| +++++++..--|++|.+- .| ..+..+++|...|..++|+++.. +++.+.
T Consensus 227 --------nq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSk 298 (420)
T KOG2096|consen 227 --------NQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSK 298 (420)
T ss_pred --------ccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEec
Confidence 122233456666 899999999999999863 22 34567789999999999999998 999999
Q ss_pred CCeEEEecCCCCccc---ceeeEE----eeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeeccccc
Q 013717 272 DRKIRVWAKPFNEKR---HALIAT----LEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGK 344 (437)
Q Consensus 272 dg~v~iwd~~~~~~~---~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 344 (437)
||++++||.+-.... .+.++. +....+....++++|+|+.|+.+. ...+++|..++++....+ ...|..
T Consensus 299 DG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~---e~~h~~ 374 (420)
T KOG2096|consen 299 DGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPEL---EDIHST 374 (420)
T ss_pred CCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhH---HHhhcC
Confidence 999999987532211 112222 222334556899999999887764 567999999887643333 356899
Q ss_pred ceEEEEeeCC--EEEEEeCCCcEEEeeC
Q 013717 345 AILCLINVAG--LLMSGSADRTVRIWQR 370 (437)
Q Consensus 345 ~i~~~~~~~~--~l~~~~~dg~i~iwd~ 370 (437)
.|.+++|+.+ ++++++ |..++++.-
T Consensus 375 ~Is~is~~~~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 375 TISSISYSSDGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred ceeeEEecCCCcEEeeec-ceeeeeecC
Confidence 9999998865 777665 667888763
No 168
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.8e-20 Score=161.68 Aligned_cols=211 Identities=16% Similarity=0.300 Sum_probs=150.2
Q ss_pred eec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC---Ce-EEEEecCCeE
Q 013717 93 VQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD---GK-IFTAHQDCKI 164 (437)
Q Consensus 93 ~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~-l~s~~~dg~i 164 (437)
..+ ||++.|.||+|+ |.+|++|++| .+.|||.-. .+.+..+. .+|...|.++.|-| +. +++|+.|..|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~--~KllhsI~--TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFE--YKLLHSIS--TGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchh--cceeeeee--cccccceeEEeeeccCCCeEEEeccCcceE
Confidence 445 999999999999 9999999999 999999986 34444433 58999999999985 33 9999999999
Q ss_pred EEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCC
Q 013717 165 RVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASD 241 (437)
Q Consensus 165 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~ 241 (437)
+++|+...+....-... ......+..|...|..++..| +.+.++++||+|+-+|++.
T Consensus 120 ~lfdl~~~~~~~~d~~~--------------------~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGM--------------------EETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred EEEecccccccccccCc--------------------cchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 99999853321110000 011233456888898888866 8899999999999999986
Q ss_pred cce-------E---EEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCccc--------------ceeeEEee-
Q 013717 242 LRC-------L---ESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKR--------------HALIATLE- 294 (437)
Q Consensus 242 ~~~-------~---~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~--------------~~~~~~~~- 294 (437)
... . ..+...--...|+.++|... |++|+.|-..++||.+..... ..++..+.
T Consensus 180 ph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p 259 (758)
T KOG1310|consen 180 PHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSP 259 (758)
T ss_pred CccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecC
Confidence 311 1 11112234578899999776 999999999999995421110 01122211
Q ss_pred Cc-----------cccEEEEEEccCCCEEEEEeCCCcEEEEECC
Q 013717 295 KH-----------KSAVNALALSDDGTVLFSGACDRSILVWDRE 327 (437)
Q Consensus 295 ~~-----------~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (437)
+| ...++-+.|+|+|..|++.-....|+++|+.
T Consensus 260 ~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn 303 (758)
T KOG1310|consen 260 GHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVN 303 (758)
T ss_pred ccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeec
Confidence 11 1225778899999988877777789999986
No 169
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.1e-18 Score=136.56 Aligned_cols=280 Identities=15% Similarity=0.206 Sum_probs=190.0
Q ss_pred eEEEEee--CCEEEEEecC-eEEEEeCCCC---c--eeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCC
Q 013717 101 IGCIAVH--HNFLYAASSH-EINVYDRTGT---T--WTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPT 172 (437)
Q Consensus 101 V~~l~~~--~~~l~s~~~d-~v~vwd~~~~---~--~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~ 172 (437)
|.+-+++ +++|+.|..+ .|.+..+++- . ..-...+....+|.++|..++|.++.|++|+. |.|+-|..+..
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~ 91 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEE 91 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhh
Confidence 3444555 8999999998 9999998751 0 01111122236899999999999888888875 99999988754
Q ss_pred cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeec
Q 013717 173 KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKA 250 (437)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 250 (437)
....-.+.+ .....|. +.=.-.-..|+++...| +-++.++.|+.++-||+++|+...++++
T Consensus 92 ~es~~~K~l-------we~~~P~----------~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rG 154 (325)
T KOG0649|consen 92 EESLATKRL-------WEVKIPM----------QVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRG 154 (325)
T ss_pred hhhccchhh-------hhhcCcc----------ccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcC
Confidence 331111100 0000000 00001334788999987 7777778999999999999999999999
Q ss_pred ccccEEEEEE-ecCCeEEEEeCCCeEEEecCCCCcccceeeEEee---------Cc-cccEEEEEEccCCCEEEEEeCCC
Q 013717 251 HEDAVNAVAV-SAGGTVYTGSADRKIRVWAKPFNEKRHALIATLE---------KH-KSAVNALALSDDGTVLFSGACDR 319 (437)
Q Consensus 251 ~~~~v~~~~~-~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---------~~-~~~i~~~~~~~~~~~l~~~~~dg 319 (437)
|.+.|.++.- +..+.+++|+.||++++||.++.+. +..+. .| ...|.+++.+ ..++++|+ ..
T Consensus 155 HtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~----v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp 227 (325)
T KOG0649|consen 155 HTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKH----VSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GP 227 (325)
T ss_pred CcceeeeeeecccCcceeecCCCccEEEEeccccce----eEEeccccChhhcCcccCceeEEEecc--CceEEecC-CC
Confidence 9999999998 5566699999999999999876542 22222 12 2346677765 44888876 45
Q ss_pred cEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCC
Q 013717 320 SILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEG 399 (437)
Q Consensus 320 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 399 (437)
.+.+|.++..+....+. + ...+..+.|..+.+++++..+.|.-|.+.. ..-..........+...|...--
T Consensus 228 ~lslwhLrsse~t~vfp--i---pa~v~~v~F~~d~vl~~G~g~~v~~~~l~G----vl~a~ip~~s~~c~s~s~~~~p~ 298 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFP--I---PARVHLVDFVDDCVLIGGEGNHVQSYTLNG----VLQANIPVESTACYSASWQTSPI 298 (325)
T ss_pred ceeEEeccCCCceEEEe--c---ccceeEeeeecceEEEeccccceeeeeecc----EEEEeccCCccceeeecccCCce
Confidence 69999999877654443 2 345677888999999999999999998875 12233333333444444443222
Q ss_pred CCceEEEEEecCCCcEEEE
Q 013717 400 QNGVVSVFSGSLDGEIRAW 418 (437)
Q Consensus 400 ~~~~~~l~s~~~dg~i~iw 418 (437)
++|-.++....+.++
T Consensus 299 ----k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 299 ----KFISIAGFSNKLHIL 313 (325)
T ss_pred ----EEEEecccceeeeee
Confidence 367777777777775
No 170
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.86 E-value=2.8e-19 Score=149.37 Aligned_cols=233 Identities=17% Similarity=0.320 Sum_probs=171.9
Q ss_pred cccCCCCcccEEEEEEeC--Ce-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC
Q 013717 135 FNDNDSSSGSVKSVTFCD--GK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH 211 (437)
Q Consensus 135 ~~~~~~h~~~v~~l~~~~--~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (437)
.....+|+++|..++|+| +. +++|+.|.+|.||++..+.....+. .....+.+|
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt-----------------------epvv~L~gH 130 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT-----------------------EPVVELYGH 130 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc-----------------------cceEEEeec
Confidence 334478999999999994 34 9999999999999998765433322 234556789
Q ss_pred CCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccc
Q 013717 212 GDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRH 287 (437)
Q Consensus 212 ~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~ 287 (437)
...|--+.|+| +.|++++.|.+|.+||+.+++.+.++. |.+.|+++.|+.||. +++.+.|..|+|||.+.+.
T Consensus 131 ~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~--- 206 (472)
T KOG0303|consen 131 QRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGT--- 206 (472)
T ss_pred ceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCc---
Confidence 99999999999 999999999999999999999998887 999999999999999 9999999999999887654
Q ss_pred eeeEEeeCccc-cEEEEEEccCCCEEEEEe---CCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEEe
Q 013717 288 ALIATLEKHKS-AVNALALSDDGTVLFSGA---CDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGS 360 (437)
Q Consensus 288 ~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~ 360 (437)
.+..-.+|.+ ....+.|-.+|..+-+|- .+..+-+||....+....+ ..+.. +..|+--.++++ ..++|-
T Consensus 207 -~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~-~elDt-SnGvl~PFyD~dt~ivYl~GK 283 (472)
T KOG0303|consen 207 -VVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIAL-QELDT-SNGVLLPFYDPDTSIVYLCGK 283 (472)
T ss_pred -EeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCccee-EEecc-CCceEEeeecCCCCEEEEEec
Confidence 5555455654 455677888888555543 3778999998876555333 23333 334444445544 566788
Q ss_pred CCCcEEEeeCCCCCCee-eeeeecCCCCCeeEEEEEccC
Q 013717 361 ADRTVRIWQRGSDGRFG-CLAVLEGHTKPVKSLTAVTEE 398 (437)
Q Consensus 361 ~dg~i~iwd~~~~~~~~-~~~~~~~h~~~v~~l~~~~~~ 398 (437)
.|+.||.|.+.....+. .+.++. ...+-..+.|.|..
T Consensus 284 GD~~IRYyEit~d~P~~hyln~f~-S~epQRG~g~mPKR 321 (472)
T KOG0303|consen 284 GDSSIRYFEITNEPPFVHYLNTFS-SKEPQRGMGFMPKR 321 (472)
T ss_pred CCcceEEEEecCCCceeEEecccc-cCCccccccccccc
Confidence 89999999998765321 122222 23455566666643
No 171
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=3e-19 Score=149.73 Aligned_cols=305 Identities=16% Similarity=0.182 Sum_probs=204.8
Q ss_pred CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCce----eeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEE
Q 013717 96 GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTW----TSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIR 165 (437)
Q Consensus 96 ~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~----~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~ 165 (437)
....+|.++.|. .+.|+||+.| .|++|.++.... ..+.-+..+..|...|+++.|++++ |++|+.+|.|.
T Consensus 11 H~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~ 90 (434)
T KOG1009|consen 11 HDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVF 90 (434)
T ss_pred cCCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEE
Confidence 345789999998 4589999999 999999875321 2333344447899999999999875 99999999999
Q ss_pred EEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcc
Q 013717 166 VWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLR 243 (437)
Q Consensus 166 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~ 243 (437)
+|........ .... ..-...+ .....+.+.+|...|..++|.+ .++++++-|..+++||+..|+
T Consensus 91 lWk~~~~~~~-~~d~--------e~~~~ke-----~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~ 156 (434)
T KOG1009|consen 91 LWKQGDVRIF-DADT--------EADLNKE-----KWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQ 156 (434)
T ss_pred EEEecCcCCc-cccc--------hhhhCcc-----ceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccce
Confidence 9987641110 0000 0000000 0112345567999999999998 899999999999999999999
Q ss_pred eEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCccc-----------------ceeeEEeeC--ccccEEEE
Q 013717 244 CLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKR-----------------HALIATLEK--HKSAVNAL 303 (437)
Q Consensus 244 ~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~-----------------~~~~~~~~~--~~~~i~~~ 303 (437)
....+..|...+..++|.|-++ +++-+.|...+.+.+...... ....+.+.. ...-...+
T Consensus 157 l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRl 236 (434)
T KOG1009|consen 157 LLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRL 236 (434)
T ss_pred eEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhc
Confidence 9999999999999999999988 888888887777755422211 111111111 11224578
Q ss_pred EEccCCCEEEEEeC----CC-----cEEEEECCCCccceEEeeeecccccceEEEEee--------------------CC
Q 013717 304 ALSDDGTVLFSGAC----DR-----SILVWDREDSANHMVVTGALRGHGKAILCLINV--------------------AG 354 (437)
Q Consensus 304 ~~~~~~~~l~~~~~----dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--------------------~~ 354 (437)
+|+|||.+|++... .+ ..++|+-...+++. ..+.........+.+. ..
T Consensus 237 sfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~---~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrl 313 (434)
T KOG1009|consen 237 SFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPA---ARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRL 313 (434)
T ss_pred ccCCCCcEEEcccceeeeCCceeeceeEeeccccccCce---eecCCCCcceEEEEeeeeEEEeccccccccccccccce
Confidence 89999999987643 22 33555544322221 1122222222222221 11
Q ss_pred EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 355 LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 355 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
.+|.++. ..|+|||..+..++.+ .-.-|-..|++++|++++. +|+..|.||..-+-.++..+.
T Consensus 314 vfaiAt~-~svyvydtq~~~P~~~--v~nihy~~iTDiaws~dg~-----~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 314 VFAIATK-NSVYVYDTQTLEPLAV--VDNIHYSAITDIAWSDDGS-----VLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred EEEEeec-ceEEEeccccccceEE--EeeeeeeeecceeecCCCc-----EEEEeccCCceEEEEEcchhc
Confidence 4455554 4699999998663332 2344888999999999986 788899999988877776554
No 172
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=8.1e-20 Score=160.31 Aligned_cols=274 Identities=19% Similarity=0.191 Sum_probs=202.9
Q ss_pred cceeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee----CCEEEEEecCeEEEEeCCCCce------
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH----HNFLYAASSHEINVYDRTGTTW------ 129 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~----~~~l~s~~~d~v~vwd~~~~~~------ 129 (437)
-+++..|+...+++++.||++++|.+.. ..|+.+....+.|.|++|+ -..||++-.+.+.|-+..-|..
T Consensus 404 r~iSvdp~G~wlasGsdDGtvriWEi~T-gRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t 482 (733)
T KOG0650|consen 404 RSISVDPSGEWLASGSDDGTVRIWEIAT-GRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPT 482 (733)
T ss_pred EEEEecCCcceeeecCCCCcEEEEEeec-ceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcch
Confidence 3778899999999999999999999977 5666666666789999998 2344444333444444322100
Q ss_pred -e-------------------------eeeccccCCCCcccEEEEEEeC--CeEEEEec---CCeEEEEeCCCCcccccc
Q 013717 130 -T-------------------------SINTFNDNDSSSGSVKSVTFCD--GKIFTAHQ---DCKIRVWQLTPTKHHKLK 178 (437)
Q Consensus 130 -~-------------------------~~~~~~~~~~h~~~v~~l~~~~--~~l~s~~~---dg~i~iwd~~~~~~~~~~ 178 (437)
. ....+...-.|...|..|.|+. +.|++... ...|.|.++........+
T Consensus 483 ~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF 562 (733)
T KOG0650|consen 483 KELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPF 562 (733)
T ss_pred hhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCch
Confidence 0 0000000123778889999984 44666654 356888888765433222
Q ss_pred cccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEE
Q 013717 179 TTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVN 256 (437)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 256 (437)
....+.|.++.|+| .+|++++. ..|+|||+...+.+..+......|.
T Consensus 563 ------------------------------~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS 611 (733)
T KOG0650|consen 563 ------------------------------RKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWIS 611 (733)
T ss_pred ------------------------------hhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeee
Confidence 23567899999999 66666554 6899999998888887777778899
Q ss_pred EEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCC-----Cc
Q 013717 257 AVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRED-----SA 330 (437)
Q Consensus 257 ~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~-----~~ 330 (437)
.++++|.|. |+.|+.|+.+..||+..+. ++.+++..|...+++++|++.-.+|++|+.||++.||--.- ..
T Consensus 612 ~msihp~GDnli~gs~d~k~~WfDldlss---kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qn 688 (733)
T KOG0650|consen 612 SMSIHPNGDNLILGSYDKKMCWFDLDLSS---KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQN 688 (733)
T ss_pred eeeecCCCCeEEEecCCCeeEEEEcccCc---chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcC
Confidence 999999998 9999999999999997665 45667778999999999999999999999999999985321 11
Q ss_pred cceEEeeeecccccc----eEEEEeeCC--EEEEEeCCCcEEEe
Q 013717 331 NHMVVTGALRGHGKA----ILCLINVAG--LLMSGSADRTVRIW 368 (437)
Q Consensus 331 ~~~~~~~~~~~~~~~----i~~~~~~~~--~l~~~~~dg~i~iw 368 (437)
...+....+.+|... |+...|++. +|++++.||+|++|
T Consensus 689 pliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 689 PLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 334556677888766 888888887 99999999999998
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=9.8e-20 Score=152.03 Aligned_cols=211 Identities=18% Similarity=0.263 Sum_probs=159.5
Q ss_pred eeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCc-------ceEEEeecccccEEEEEEecCCe--EEEEeCCCe
Q 013717 207 LWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDL-------RCLESIKAHEDAVNAVAVSAGGT--VYTGSADRK 274 (437)
Q Consensus 207 ~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~ 274 (437)
.+.+|.++|..++|+| ..|++|+.|.+|.||.+..+ +.+..+.+|...|--++|+|.-. |++++.|..
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 3468999999999999 89999999999999998754 45677889999999999999776 999999999
Q ss_pred EEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccc---eEEEEe
Q 013717 275 IRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKA---ILCLIN 351 (437)
Q Consensus 275 v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~---i~~~~~ 351 (437)
|.+||+.++. .+..+. |...|.++.|+.||.+|++.+.|..|+|||.++++.... -.+|.+. -.-+--
T Consensus 156 v~iWnv~tge----ali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e----~~~heG~k~~Raifl~ 226 (472)
T KOG0303|consen 156 VSIWNVGTGE----ALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSE----GVAHEGAKPARAIFLA 226 (472)
T ss_pred EEEEeccCCc----eeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeee----cccccCCCcceeEEec
Confidence 9999887665 444555 999999999999999999999999999999998874332 2344332 122223
Q ss_pred eCCEEEEEe---CCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCCCC
Q 013717 352 VAGLLMSGS---ADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSS 428 (437)
Q Consensus 352 ~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 428 (437)
++.++-||- .+.++-+||-..-+....+.++... +.|.-=-+.++.+ .+.++|-.|+.||.|+++...|.-.
T Consensus 227 ~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS-nGvl~PFyD~dt~----ivYl~GKGD~~IRYyEit~d~P~~h 301 (472)
T KOG0303|consen 227 SGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTS-NGVLLPFYDPDTS----IVYLCGKGDSSIRYFEITNEPPFVH 301 (472)
T ss_pred cCceeeeccccccccceeccCcccccCcceeEEeccC-CceEEeeecCCCC----EEEEEecCCcceEEEEecCCCceeE
Confidence 444444442 3678999998876655455566543 3443333455544 3566777899999999999887555
Q ss_pred Cee
Q 013717 429 PLN 431 (437)
Q Consensus 429 ~~~ 431 (437)
.++
T Consensus 302 yln 304 (472)
T KOG0303|consen 302 YLN 304 (472)
T ss_pred Eec
Confidence 444
No 174
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.85 E-value=3.7e-19 Score=144.93 Aligned_cols=270 Identities=18% Similarity=0.223 Sum_probs=195.0
Q ss_pred ceeeccccccccccCCCceeEEecCCCcc-----------eeeeec--CccCCeEEEEee---------CCEEEEEecC-
Q 013717 61 SLQTLPSVPSLQKLSPDETINFSSASHLC-----------INSVQL--GHKLPIGCIAVH---------HNFLYAASSH- 117 (437)
Q Consensus 61 ~~~~~~~~~~~~s~s~dg~i~~~~~~~~~-----------~~~~~~--~h~~~V~~l~~~---------~~~l~s~~~d- 117 (437)
...-+|...-+++.+.|..+++|++.... .....+ .....|...+|- ..++++.+.+
T Consensus 54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~ 133 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ 133 (406)
T ss_pred cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence 45678889999999999999999982211 111111 233456666553 4788888888
Q ss_pred eEEEEeCCCCceeeeeccccCCCCcc---cEEEEEEeCCe-EEEEecCCeEEEEeC-CCCcccccccccCccccceeeec
Q 013717 118 EINVYDRTGTTWTSINTFNDNDSSSG---SVKSVTFCDGK-IFTAHQDCKIRVWQL-TPTKHHKLKTTLPTVNDRLLRFM 192 (437)
Q Consensus 118 ~v~vwd~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~-l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~~~~~~~ 192 (437)
-|++||.-+|+.+..... ..|.. .-.+++|++++ -+.++....|+++|+ +.+..-.....+...
T Consensus 134 PIh~wdaftG~lraSy~~---ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~-------- 202 (406)
T KOG2919|consen 134 PIHLWDAFTGKLRASYRA---YDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKG-------- 202 (406)
T ss_pred ceeeeeccccccccchhh---hhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcc--------
Confidence 999999999766554443 23444 45689999887 666777889999999 444432222221100
Q ss_pred CCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEE
Q 013717 193 LPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYT 268 (437)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~ 268 (437)
-.+..+-|.+++++| ..++.|+....+-||.-..+.++..+-+|.+.|+.+.|.++|. |++
T Consensus 203 ---------------k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfs 267 (406)
T KOG2919|consen 203 ---------------KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFS 267 (406)
T ss_pred ---------------cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecc
Confidence 023567789999999 6899999999999999989999999999999999999999998 888
Q ss_pred EeC-CCeEEEecCCCCcccceeeEEeeCccc---cEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeeccccc
Q 013717 269 GSA-DRKIRVWAKPFNEKRHALIATLEKHKS---AVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGK 344 (437)
Q Consensus 269 ~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 344 (437)
|.. |..|..||++... .++..+..|.. .-.-....|+|++|++|+.||.|++||+++... ....+..+..
T Consensus 268 GaRk~dkIl~WDiR~~~---~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn---~~sv~~~~sd 341 (406)
T KOG2919|consen 268 GARKDDKILCWDIRYSR---DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN---EVSVTGNYSD 341 (406)
T ss_pred cccCCCeEEEEeehhcc---chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC---cccccccccc
Confidence 775 7899999998654 23444444433 222345568999999999999999999987433 2233456788
Q ss_pred ceEEEEeeCC--EEEEEeCC
Q 013717 345 AILCLINVAG--LLMSGSAD 362 (437)
Q Consensus 345 ~i~~~~~~~~--~l~~~~~d 362 (437)
.+..++.++- ++++++..
T Consensus 342 ~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 342 TVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred cccceecCcccceeeeccCc
Confidence 8999998887 55655543
No 175
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.84 E-value=3e-19 Score=143.27 Aligned_cols=207 Identities=21% Similarity=0.300 Sum_probs=159.1
Q ss_pred eeecCCCcEEEEEeCC---CeEEEEECC-------CcEEEEECCCc---------ceEEEee-cccccEEEEEEecCCe-
Q 013717 207 LWIEHGDAVTGLAVNN---GLIYSVSWD-------KSLKIWRASDL---------RCLESIK-AHEDAVNAVAVSAGGT- 265 (437)
Q Consensus 207 ~~~~~~~~v~~~~~~~---~~l~~~~~d-------g~i~iwd~~~~---------~~~~~~~-~~~~~v~~~~~~~~~~- 265 (437)
.|..|.++|..++-+| +.|+++..+ -.+.||.+... +++..+. .+-+.|.|+.|.|++.
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~k 137 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDK 137 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCe
Confidence 3456889999999988 677777653 24679988643 3333443 4556899999999988
Q ss_pred EEEEeCCCeEEEecCCCCcccceeeE-Ee-eCccccEEEEEEcc--CCCEEEEEeCCCcEEEEECCCCccceEEeeeecc
Q 013717 266 VYTGSADRKIRVWAKPFNEKRHALIA-TL-EKHKSAVNALALSD--DGTVLFSGACDRSILVWDREDSANHMVVTGALRG 341 (437)
Q Consensus 266 l~~~~~dg~v~iwd~~~~~~~~~~~~-~~-~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 341 (437)
+++-. |..|.+|++.........+. .. ..+....++-+|+| ||+.+++. .|+++..||+++..+...+ ..+
T Consensus 138 lasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI---~dA 212 (370)
T KOG1007|consen 138 LASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSI---EDA 212 (370)
T ss_pred eEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcch---hhh
Confidence 55544 89999999876553211111 11 12456678889999 78787776 5899999999976654433 457
Q ss_pred cccceEEEEeeCC---EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEE
Q 013717 342 HGKAILCLINVAG---LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAW 418 (437)
Q Consensus 342 ~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw 418 (437)
|...+..+.++++ +|++++.||.|+|||.+..+ .++..+.+|...|.++.|.|..++ ++++||.|..|.+|
T Consensus 213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk--~pv~el~~HsHWvW~VRfn~~hdq----LiLs~~SDs~V~Ls 286 (370)
T KOG1007|consen 213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK--FPVQELPGHSHWVWAVRFNPEHDQ----LILSGGSDSAVNLS 286 (370)
T ss_pred hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC--ccccccCCCceEEEEEEecCccce----EEEecCCCceeEEE
Confidence 8889999999988 89999999999999999866 689999999999999999998875 99999999999999
Q ss_pred eeccCC
Q 013717 419 QVSVSC 424 (437)
Q Consensus 419 ~~~~~~ 424 (437)
....-.
T Consensus 287 ca~svS 292 (370)
T KOG1007|consen 287 CASSVS 292 (370)
T ss_pred eccccc
Confidence 866543
No 176
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=1.5e-16 Score=148.49 Aligned_cols=315 Identities=32% Similarity=0.471 Sum_probs=231.0
Q ss_pred cceeeccccccccccCCCceeEEecCCCcceeeeec-Ccc-CCeEEEEe-e--CC-EEEEEec-C-eEEEEeCCC-Ccee
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHK-LPIGCIAV-H--HN-FLYAASS-H-EINVYDRTG-TTWT 130 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~-~~V~~l~~-~--~~-~l~s~~~-d-~v~vwd~~~-~~~~ 130 (437)
..+.+.+....+...+.|+.+.+|+..........+ ++. ..+..+.+ . +. +++..+. + .+.+|+... ...
T Consensus 69 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~- 147 (466)
T COG2319 69 TSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKL- 147 (466)
T ss_pred EEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeE-
Confidence 566788888888888999999999998776455555 533 47777777 4 44 5555444 7 999999986 222
Q ss_pred eeeccccCCCCcccEEEEEEeCCe--EEEEec-CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeecccee
Q 013717 131 SINTFNDNDSSSGSVKSVTFCDGK--IFTAHQ-DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKL 207 (437)
Q Consensus 131 ~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (437)
...+ ..|...|..+.|+++. +++++. |+.+++|++.........
T Consensus 148 -~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 194 (466)
T COG2319 148 -IRTL---EGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTL----------------------------- 194 (466)
T ss_pred -EEEE---ecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEee-----------------------------
Confidence 2222 4699999999999776 666764 999999999874332222
Q ss_pred eecCCCcEEEEEeCC--C-eEEEEECCCcEEEEECCCcceEE-EeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCC
Q 013717 208 WIEHGDAVTGLAVNN--G-LIYSVSWDKSLKIWRASDLRCLE-SIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPF 282 (437)
Q Consensus 208 ~~~~~~~v~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~ 282 (437)
.+|...|.++++.+ . .+++++.|+.|++||...+..+. .+..|.... ...|++++. +++++.|+.+++|++..
T Consensus 195 -~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~ 272 (466)
T COG2319 195 -AGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRS 272 (466)
T ss_pred -ccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecC
Confidence 34889999999998 3 45555899999999998888877 577777765 448999986 88999999999999875
Q ss_pred CcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC--CEEEEE-
Q 013717 283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA--GLLMSG- 359 (437)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~- 359 (437)
... ....+..|...+.++.|.|++..+++++.|+.+.+||........... ...|...+..+.+.+ ..++.+
T Consensus 273 ~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 347 (466)
T COG2319 273 SSS---LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT--LKGHEGPVSSLSFSPDGSLLVSGG 347 (466)
T ss_pred CCc---EEEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee--ecccCCceEEEEECCCCCEEEEee
Confidence 543 223336678999999999988888889999999999887665333322 235666677776632 355555
Q ss_pred eCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEE-ecCCCcEEEEeeccCCC
Q 013717 360 SADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFS-GSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 360 ~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s-~~~dg~i~iw~~~~~~~ 425 (437)
..|+.+++|++.... .......+. .+..+.+.+ . . .++. +..++.+.+|+......
T Consensus 348 ~~d~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~-~-~----~~~~~~~~~~~~~~~~~~~~~~ 404 (466)
T COG2319 348 SDDGTIRLWDLRTGK---PLKTLEGHS-NVLSVSFSP-D-G----RVVSSGSTDGTVRLWDLSTGSL 404 (466)
T ss_pred cCCCcEEeeecCCCc---eeEEecCCc-eEEEEEECC-C-C----CEEEEecCCCceEEEecccCee
Confidence 688999999998755 223333222 288888888 6 4 3444 89999999999987754
No 177
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.83 E-value=3.1e-19 Score=141.36 Aligned_cols=283 Identities=13% Similarity=0.119 Sum_probs=196.9
Q ss_pred cceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee-CCEEEEEecC-eEEEEeCCCCceeeeeccc
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH-HNFLYAASSH-EINVYDRTGTTWTSINTFN 136 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~ 136 (437)
.++.|..+.. +.++...|.+.+|.++........- .|...|+.+..- ++.|.+-+.| .+.+|++.......+
T Consensus 18 ~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~i---- 92 (323)
T KOG0322|consen 18 TSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFISI---- 92 (323)
T ss_pred eehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCcchhhcCCCceEEEEEccCcceEEE----
Confidence 4556666665 7778999999999998877666655 788899999887 7999999999 999999987433222
Q ss_pred cCCCCcccEEEEEEeCCeEEEEecCC-eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcE
Q 013717 137 DNDSSSGSVKSVTFCDGKIFTAHQDC-KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAV 215 (437)
Q Consensus 137 ~~~~h~~~v~~l~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 215 (437)
|.-.++++.|.+-.+...+... ..-.++-+.... .............+..+ .-.+..+.+
T Consensus 93 ----~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde---~h~~D~g~~tqv~i~dd------------~~~~Klgsv 153 (323)
T KOG0322|consen 93 ----HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE---THKQDGGDTTQVQIADD------------SERSKLGSV 153 (323)
T ss_pred ----eeeeccccccccceeccCCCcchhheecCCcccch---hhhhccCccceeEccCc------------hhccccCce
Confidence 5556677777655454444332 122222211111 00000000000000000 002355667
Q ss_pred EEEEeCC-----CeEEEEECCCcEEEEECCCcceE----------EEeecccccEEEEEEecCCe-EEEEeCCCeEEEec
Q 013717 216 TGLAVNN-----GLIYSVSWDKSLKIWRASDLRCL----------ESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWA 279 (437)
Q Consensus 216 ~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~~----------~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd 279 (437)
.+..+.. -++++|.++|.+.+||+.++..+ .....|.++|.++.+.+.-. =++|+.+..+..|.
T Consensus 154 mc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~S 233 (323)
T KOG0322|consen 154 MCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYS 233 (323)
T ss_pred eeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeee
Confidence 7776432 56788899999999999987433 33346889999999986544 67888889999999
Q ss_pred CCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEE
Q 013717 280 KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLM 357 (437)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~ 357 (437)
+.......+......-.+-.+..+.+-||++.+++++.|+.|+||..++... ...+..|...|.+++|+++ ++|
T Consensus 234 l~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p----LAVLkyHsagvn~vAfspd~~lmA 309 (323)
T KOG0322|consen 234 LNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP----LAVLKYHSAGVNAVAFSPDCELMA 309 (323)
T ss_pred eccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCc----hhhhhhhhcceeEEEeCCCCchhh
Confidence 8765444444444444456788999999999999999999999999988763 3445679999999999987 999
Q ss_pred EEeCCCcEEEeeC
Q 013717 358 SGSADRTVRIWQR 370 (437)
Q Consensus 358 ~~~~dg~i~iwd~ 370 (437)
+++.|++|.+|++
T Consensus 310 aaskD~rISLWkL 322 (323)
T KOG0322|consen 310 AASKDARISLWKL 322 (323)
T ss_pred hccCCceEEeeec
Confidence 9999999999986
No 178
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.9e-19 Score=157.14 Aligned_cols=211 Identities=26% Similarity=0.432 Sum_probs=168.5
Q ss_pred eeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCC--------cceEEEeecccccEEEEEEecCCe-EEEEeCCCeE
Q 013717 207 LWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASD--------LRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKI 275 (437)
Q Consensus 207 ~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~--------~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v 275 (437)
.+..|...|..+.|++ ..|++++.||.|++|+++. .+++.++++|.++|.|+++.+++. +++|+.||.|
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 4467889999999998 9999999999999999932 356888999999999999999999 9999999999
Q ss_pred EEecCCCCcc------cceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEee------------
Q 013717 276 RVWAKPFNEK------RHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTG------------ 337 (437)
Q Consensus 276 ~iwd~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~------------ 337 (437)
+.|++..+.. .......+.+|...+..+++++....|++++.||+++.|+...... ..+..
T Consensus 369 ~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 369 RCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDR 447 (577)
T ss_pred eeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEee
Confidence 9997653322 2234557789999999999999988999999999999999764332 00000
Q ss_pred --e---------------------------e--cc-----cccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeee
Q 013717 338 --A---------------------------L--RG-----HGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCL 379 (437)
Q Consensus 338 --~---------------------------~--~~-----~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~ 379 (437)
. + .. ....+..+.++++ +.+++..|+.|+++|..++. .+
T Consensus 448 ~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~---~l 524 (577)
T KOG0642|consen 448 TSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK---IL 524 (577)
T ss_pred ccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccc---cc
Confidence 0 0 00 0012233333333 88999999999999999877 88
Q ss_pred eeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCC
Q 013717 380 AVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPN 426 (437)
Q Consensus 380 ~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 426 (437)
....+|...++++++.|++. +|++++.||.+++|++......
T Consensus 525 ~s~~a~~~svtslai~~ng~-----~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 525 HSMVAHKDSVTSLAIDPNGP-----YLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred hheeeccceecceeecCCCc-----eEEeecCCceeehhhccchhee
Confidence 89999999999999999996 7999999999999999766543
No 179
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=2e-17 Score=129.71 Aligned_cols=263 Identities=15% Similarity=0.151 Sum_probs=179.6
Q ss_pred eeeccccccccccCCCceeEEecC---------CCcceeeeec-CccCCeEEEEeeCCEEEEEecCeEEEEeCCCCce--
Q 013717 62 LQTLPSVPSLQKLSPDETINFSSA---------SHLCINSVQL-GHKLPIGCIAVHHNFLYAASSHEINVYDRTGTTW-- 129 (437)
Q Consensus 62 ~~~~~~~~~~~s~s~dg~i~~~~~---------~~~~~~~~~~-~h~~~V~~l~~~~~~l~s~~~d~v~vwd~~~~~~-- 129 (437)
-...|+...++.++.+|+|.+.++ .+....+... +|.++|+.++|..++|++|+++.|+=|..+....
T Consensus 16 qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gdG~V~gw~W~E~~es~ 95 (325)
T KOG0649|consen 16 QAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGDGLVYGWEWNEEEESL 95 (325)
T ss_pred HhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccCceEEEeeehhhhhhc
Confidence 345677778899999999999887 2233445555 9999999999999999999988999988765311
Q ss_pred ------eeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEe
Q 013717 130 ------TSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVR 201 (437)
Q Consensus 130 ------~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (437)
+...........--.|+++-..|.. ++.++.|+.+.-||+++++..+.+
T Consensus 96 ~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~----------------------- 152 (325)
T KOG0649|consen 96 ATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREY----------------------- 152 (325)
T ss_pred cchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEE-----------------------
Confidence 1111110001122457888887544 888889999999999999755444
Q ss_pred eccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecc----------cccEEEEEEecCCeEEEE
Q 013717 202 RHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAH----------EDAVNAVAVSAGGTVYTG 269 (437)
Q Consensus 202 ~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------~~~v~~~~~~~~~~l~~~ 269 (437)
.+|++.|.++.... ..+++|++||++|+||.++++++..+... ...|-+++.+ ..-+++
T Consensus 153 -------rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvC 223 (325)
T KOG0649|consen 153 -------RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVC 223 (325)
T ss_pred -------cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEe
Confidence 58999999998844 89999999999999999999998887522 2345566553 344555
Q ss_pred eCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEE
Q 013717 270 SADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCL 349 (437)
Q Consensus 270 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~ 349 (437)
+....+.+|.++..+. ...+. -...+..+.|..| .+++++..+.|.-|.+... +............+.
T Consensus 224 GgGp~lslwhLrsse~----t~vfp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gv-----l~a~ip~~s~~c~s~ 291 (325)
T KOG0649|consen 224 GGGPKLSLWHLRSSES----TCVFP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNGV-----LQANIPVESTACYSA 291 (325)
T ss_pred cCCCceeEEeccCCCc----eEEEe-cccceeEeeeecc--eEEEeccccceeeeeeccE-----EEEeccCCccceeee
Confidence 6678899999876542 22222 3456777888754 7888888888999987531 222222222233333
Q ss_pred EeeCC---EEEEEeCCCcEEEe
Q 013717 350 INVAG---LLMSGSADRTVRIW 368 (437)
Q Consensus 350 ~~~~~---~l~~~~~dg~i~iw 368 (437)
+++-. +|-.++....+.|+
T Consensus 292 s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 292 SWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred cccCCceEEEEecccceeeeee
Confidence 33322 55556666666665
No 180
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.82 E-value=5e-18 Score=155.40 Aligned_cols=273 Identities=16% Similarity=0.154 Sum_probs=191.7
Q ss_pred CceeEEecCCCcceeeeecCccCCeEEEEee---CCEEEEEecC-eEEEEeCCCCceeeeecc-ccCCCCcccEEEEEEe
Q 013717 77 DETINFSSASHLCINSVQLGHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGTTWTSINTF-NDNDSSSGSVKSVTFC 151 (437)
Q Consensus 77 dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~~~-~~~~~h~~~v~~l~~~ 151 (437)
++.+.+|+......+...+.-...|.|+.|+ +++||.|..+ .|.+||+..+.......+ .....|..++..+.|.
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~ 300 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL 300 (555)
T ss_pred CceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence 3479999998877777778888999999998 8899999999 999999998644222221 1224699999999997
Q ss_pred CC----eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---Ce
Q 013717 152 DG----KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GL 224 (437)
Q Consensus 152 ~~----~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~ 224 (437)
.+ .+++++.||.|..|+++.-.............. ...-......+++++|.+ ..
T Consensus 301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~------------------~~~~~~~~~~~t~~~F~~~~p~~ 362 (555)
T KOG1587|consen 301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKH------------------KGQQSSKAVGATSLKFEPTDPNH 362 (555)
T ss_pred ccCCCCceEEEecCCcEeeeeccccccchhhcccccccc------------------cccccccccceeeEeeccCCCce
Confidence 32 299999999999998775433222111110000 000012334678888876 88
Q ss_pred EEEEECCCcEEEEECCCcc--------eEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeC
Q 013717 225 IYSVSWDKSLKIWRASDLR--------CLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEK 295 (437)
Q Consensus 225 l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 295 (437)
++.|+.+|.|.-=+-...+ ....+..|.+.|+++.++|-+. ++..+.|.+++||.... ...++..+..
T Consensus 363 FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~---~~~Pl~~~~~ 439 (555)
T KOG1587|consen 363 FIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDV---IASPLLSLDS 439 (555)
T ss_pred EEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccC---CCCcchhhhh
Confidence 9999999999873332221 1234457889999999999887 44444499999996542 2345666666
Q ss_pred ccccEEEEEEccCC-CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeCCCcEEEeeCCC
Q 013717 296 HKSAVNALALSDDG-TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVRIWQRGS 372 (437)
Q Consensus 296 ~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~ 372 (437)
+...+++++|||-. ..|+++..||.|.+||+............. +......+.+. +..|++|...|.+.+|++..
T Consensus 440 ~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~--~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 440 SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV--CSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccc--cccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 77789999999964 478888899999999997654443333222 23333444444 55999999999999999964
No 181
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.82 E-value=1.7e-18 Score=154.10 Aligned_cols=268 Identities=16% Similarity=0.242 Sum_probs=200.8
Q ss_pred CeEEEEee--CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCccc
Q 013717 100 PIGCIAVH--HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHH 175 (437)
Q Consensus 100 ~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~ 175 (437)
.|..++|. |..|+.+.++.+.+||.+.| ..+.++ ++|...|.|++|+.++ +++|+.|..|.+|+..-....
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG--~llqtL---KgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L 88 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDG--TLLQPL---KGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL 88 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCc--cccccc---ccccceEEEEEEccCCceeccCCCceeEEEeccccccee
Confidence 78899998 88888888889999999985 445555 7899999999999554 999999999999986533211
Q ss_pred ccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccc
Q 013717 176 KLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHED 253 (437)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 253 (437)
+ ..|.+.|.|+.|+| ..+++++- ...-+|........ .. ....
T Consensus 89 k--------------------------------YSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~-K~-kss~ 133 (1081)
T KOG1538|consen 89 K--------------------------------YSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVS-KH-KSSS 133 (1081)
T ss_pred e--------------------------------eccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHH-hh-hhhe
Confidence 1 35999999999999 66776654 35678887554322 22 2456
Q ss_pred cEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCC-----CEEEEEeCCCcEEEEECC
Q 013717 254 AVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDG-----TVLFSGACDRSILVWDRE 327 (437)
Q Consensus 254 ~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~l~~~~~dg~i~i~d~~ 327 (437)
.+.+.+|..||. ++.|-.+|+|.+-+-. .+....+..--+.+++|.+++|+|.. ..+++.....++.+|.+.
T Consensus 134 R~~~CsWtnDGqylalG~~nGTIsiRNk~--gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls 211 (1081)
T KOG1538|consen 134 RIICCSWTNDGQYLALGMFNGTISIRNKN--GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS 211 (1081)
T ss_pred eEEEeeecCCCcEEEEeccCceEEeecCC--CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec
Confidence 788999999999 9999999999997432 11222233333577899999999953 377888888888888876
Q ss_pred CCccceEEeeeecccccceEEE--EeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEE
Q 013717 328 DSANHMVVTGALRGHGKAILCL--INVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVS 405 (437)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~i~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 405 (437)
.. .+...+.-.-...|+ ..+|.+++.|+.|+.+.+|-.+. ..+.++......|+.++..|++ ++
T Consensus 212 G~-----~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G----vrLGTvg~~D~WIWtV~~~PNs-----Q~ 277 (1081)
T KOG1538|consen 212 GK-----QIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG----VRLGTVGEQDSWIWTVQAKPNS-----QY 277 (1081)
T ss_pred ce-----eecccccCCCCchhheeccCCcEEEEccCCCceEEEeecC----eEEeeccccceeEEEEEEccCC-----ce
Confidence 42 222111222223344 45677999999999999997664 3677777788899999999998 48
Q ss_pred EEEecCCCcEEEEeeccC
Q 013717 406 VFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 406 l~s~~~dg~i~iw~~~~~ 423 (437)
++.|+.||+|-.|++-..
T Consensus 278 v~~GCqDGTiACyNl~fS 295 (1081)
T KOG1538|consen 278 VVVGCQDGTIACYNLIFS 295 (1081)
T ss_pred EEEEEccCeeehhhhHHh
Confidence 999999999999987654
No 182
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.82 E-value=5.8e-18 Score=154.99 Aligned_cols=266 Identities=14% Similarity=0.145 Sum_probs=191.8
Q ss_pred eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC---CeEEEEecCCeEEEEeCCCCcccc--cccccCccccceeeec
Q 013717 118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD---GKIFTAHQDCKIRVWQLTPTKHHK--LKTTLPTVNDRLLRFM 192 (437)
Q Consensus 118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~ 192 (437)
.+.||+++.. ......+ .-...|++++|++ +.++.|+.+|.|.+||+..+.... .+...
T Consensus 223 ~~~vW~~~~p-~~Pe~~~----~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~----------- 286 (555)
T KOG1587|consen 223 VLLVWSLKNP-NTPELVL----ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSAL----------- 286 (555)
T ss_pred eEEEEecCCC-CCceEEE----ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccc-----------
Confidence 5999999985 3333333 3568899999984 449999999999999999776421 11111
Q ss_pred CCCCeeEEeeccceeeecCCCcEEEEEeCC----CeEEEEECCCcEEEEECCCcceEEE------ee------cccccEE
Q 013717 193 LPNSYVTVRRHKKKLWIEHGDAVTGLAVNN----GLIYSVSWDKSLKIWRASDLRCLES------IK------AHEDAVN 256 (437)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~~~------~~------~~~~~v~ 256 (437)
-..|..+++.+.|.. .-+++++.||.|..|+++....... .. .....++
T Consensus 287 ---------------~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t 351 (555)
T KOG1587|consen 287 ---------------EVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGAT 351 (555)
T ss_pred ---------------cccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccccccccccccccee
Confidence 125899999999965 4599999999999999875433111 11 1234688
Q ss_pred EEEEecCCe--EEEEeCCCeEEEecCCCCcccc----eeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCc
Q 013717 257 AVAVSAGGT--VYTGSADRKIRVWAKPFNEKRH----ALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSA 330 (437)
Q Consensus 257 ~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 330 (437)
+++|.+... +++|+.+|.|..-+........ +....+..|.++|+++.++|-+..++..+.|-+++||.-....
T Consensus 352 ~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~ 431 (555)
T KOG1587|consen 352 SLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIA 431 (555)
T ss_pred eEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCC
Confidence 999988665 9999999999874332222222 3344556788999999999977766655569999999976221
Q ss_pred cceEEeeeecccccceEEEEeeCC---EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEE
Q 013717 331 NHMVVTGALRGHGKAILCLINVAG---LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVF 407 (437)
Q Consensus 331 ~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~ 407 (437)
. ....+..+...+++++|++. .++++..||.|.+||+.... ..++.....+....+.+.|++.+ ++|+
T Consensus 432 ~---Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~-~~Pv~s~~~~~~~l~~~~~s~~g-----~~la 502 (555)
T KOG1587|consen 432 S---PLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDD-EEPVLSQKVCSPALTRVRWSPNG-----KLLA 502 (555)
T ss_pred C---cchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccc-cCCcccccccccccceeecCCCC-----cEEE
Confidence 1 22234456667999999876 89999999999999998654 23555555556677788888877 4899
Q ss_pred EecCCCcEEEEeeccC
Q 013717 408 SGSLDGEIRAWQVSVS 423 (437)
Q Consensus 408 s~~~dg~i~iw~~~~~ 423 (437)
.|+..|++.+|++...
T Consensus 503 vGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 503 VGDANGTTHILKLSES 518 (555)
T ss_pred EecCCCcEEEEEcCch
Confidence 9999999999999754
No 183
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.82 E-value=9.9e-20 Score=165.65 Aligned_cols=271 Identities=20% Similarity=0.254 Sum_probs=202.6
Q ss_pred CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCC
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLT 170 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~ 170 (437)
||...|+|+.|+ |.++++|++| .|+||..++ ..++..+ .||.+.|+.++.+.+. +++++.|..|++|.+.
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et--~~~lAs~---rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~ 262 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMET--ARCLASC---RGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLP 262 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccc--hhhhccC---CCCccccchhccchhhhhhhhcccCceEEEEecC
Confidence 999999999999 9999999999 999999888 4556665 7899999999998555 8899999999999999
Q ss_pred CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEe--
Q 013717 171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESI-- 248 (437)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-- 248 (437)
.+..+..+ .+|++.|++++|+|.. +.+.||++++||.+ ...+...
T Consensus 263 ~~~pvsvL------------------------------rghtgavtaiafsP~~--sss~dgt~~~wd~r-~~~~~y~pr 309 (1113)
T KOG0644|consen 263 DGAPVSVL------------------------------RGHTGAVTAIAFSPRA--SSSDDGTCRIWDAR-LEPRIYVPR 309 (1113)
T ss_pred CCchHHHH------------------------------hccccceeeeccCccc--cCCCCCceEecccc-ccccccCCC
Confidence 88765554 4799999999999943 77899999999987 2221111
Q ss_pred --e-cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCC-CEEEEEeCCCcEEE
Q 013717 249 --K-AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDG-TVLFSGACDRSILV 323 (437)
Q Consensus 249 --~-~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i 323 (437)
+ ....-+.++.+...+. +++|+.|+.-..|.+..-. .+...+.-+.++.+- .+.+++-.+-.+.+
T Consensus 310 p~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~----------~~~~~lif~t~ssd~~~~~~~ar~~~~~~v 379 (1113)
T KOG0644|consen 310 PLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA----------WRSNLLIFVTRSSDLSSIVVTARNDHRLCV 379 (1113)
T ss_pred CCCcccccceeeeeccccccccccccCCcccccchhhHhh----------hhccceEEEeccccccccceeeeeeeEeee
Confidence 1 1234566677777777 9999999999988553211 122222222222222 46667777888999
Q ss_pred EECCCCccceEEeeeecccccceEEEEeeCC---EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCC
Q 013717 324 WDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQ 400 (437)
Q Consensus 324 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 400 (437)
|++.++. +.+...+|...+..+.+++- ...+++.||...|||+-.+...+.. ..+ .+.+..-.|++++.
T Consensus 380 wnl~~g~----l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y--~~g-h~kl~d~kFSqdgt- 451 (1113)
T KOG0644|consen 380 WNLYTGQ----LLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHY--FIG-HGKLVDGKFSQDGT- 451 (1113)
T ss_pred eecccch----hhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceee--ecc-cceeeccccCCCCc-
Confidence 9998876 45556778888888877654 7788999999999999877732222 244 45667778999984
Q ss_pred CceEEEEEecCCCcEEEEeeccCCCC
Q 013717 401 NGVVSVFSGSLDGEIRAWQVSVSCPN 426 (437)
Q Consensus 401 ~~~~~l~s~~~dg~i~iw~~~~~~~~ 426 (437)
.++....-|.+.|.....++++
T Consensus 452 ----s~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 452 ----SIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred ----eEecCCCCCceEEeccCCCccc
Confidence 4777777789999887776654
No 184
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.82 E-value=3.7e-18 Score=137.16 Aligned_cols=205 Identities=16% Similarity=0.182 Sum_probs=155.9
Q ss_pred cCCCcEEEEEeCC-------CeEEEEECCCcEEEEECCCcce----EEEe-----ecccccEEEEEEecCCe--EEEEeC
Q 013717 210 EHGDAVTGLAVNN-------GLIYSVSWDKSLKIWRASDLRC----LESI-----KAHEDAVNAVAVSAGGT--VYTGSA 271 (437)
Q Consensus 210 ~~~~~v~~~~~~~-------~~l~~~~~dg~i~iwd~~~~~~----~~~~-----~~~~~~v~~~~~~~~~~--l~~~~~ 271 (437)
.|..+++.+.|.| ++|++. +-.+|+|.+...+. ...+ ..+..++++..|+.-.. +.+.+-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 5888999999977 345544 34799999874221 1111 14567899999986443 889999
Q ss_pred CCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCC-CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEE
Q 013717 272 DRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDG-TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLI 350 (437)
Q Consensus 272 dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~ 350 (437)
|-+..|||+..+. .+.....+-+|...|..++|...+ +.|++.+.||.|++||++..+....+ ..-.....+...++
T Consensus 172 DTTCTiWdie~~~-~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTII-YE~p~~~~pLlRLs 249 (364)
T KOG0290|consen 172 DTTCTIWDIETGV-SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTII-YEDPSPSTPLLRLS 249 (364)
T ss_pred cCeEEEEEEeecc-ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEE-ecCCCCCCcceeec
Confidence 9999999998652 223445566899999999999865 48899999999999999976543322 22222245677888
Q ss_pred eeCC---EEEEEeCC-CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 351 NVAG---LLMSGSAD-RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 351 ~~~~---~l~~~~~d-g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
|+.+ ++|+-..| ..|.|.|++... .++..+++|.+.|++|+|.|.... .|+|+|+|..+.+||+....
T Consensus 250 wnkqDpnymATf~~dS~~V~iLDiR~P~--tpva~L~~H~a~VNgIaWaPhS~~----hictaGDD~qaliWDl~q~~ 321 (364)
T KOG0290|consen 250 WNKQDPNYMATFAMDSNKVVILDIRVPC--TPVARLRNHQASVNGIAWAPHSSS----HICTAGDDCQALIWDLQQMP 321 (364)
T ss_pred cCcCCchHHhhhhcCCceEEEEEecCCC--cceehhhcCcccccceEecCCCCc----eeeecCCcceEEEEeccccc
Confidence 8754 88876665 469999999866 688999999999999999998875 89999999999999998653
No 185
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.82 E-value=4e-16 Score=129.74 Aligned_cols=223 Identities=17% Similarity=0.192 Sum_probs=169.0
Q ss_pred ccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEeeCCEEEEEecC---eEEEEeCCCCceeeeeccccCCCCcc
Q 013717 67 SVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVHHNFLYAASSH---EINVYDRTGTTWTSINTFNDNDSSSG 143 (437)
Q Consensus 67 ~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~l~s~~~d---~v~vwd~~~~~~~~~~~~~~~~~h~~ 143 (437)
....+..++.||. .+++.++..++.........|.-+-|+..++|..+.+ .+++.+.+.+...+... ...
T Consensus 16 d~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~------fpt 88 (391)
T KOG2110|consen 16 DSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIF------FPT 88 (391)
T ss_pred ceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEe------cCC
Confidence 3344555556664 4445555444333334455677888888888888766 59999998854444444 467
Q ss_pred cEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-
Q 013717 144 SVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN- 222 (437)
Q Consensus 144 ~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 222 (437)
.|.++.++-++|+.+-.+. |.|||+++.+.+..+...+ .+...+.++.+++
T Consensus 89 ~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~---------------------------~n~~gl~AlS~n~~ 140 (391)
T KOG2110|consen 89 SILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTP---------------------------PNPKGLCALSPNNA 140 (391)
T ss_pred ceEEEEEccceEEEEEccc-EEEEecccceeehhhhccC---------------------------CCccceEeeccCCC
Confidence 8999999999988887665 9999999998777776553 2555677777776
Q ss_pred -CeEEEE--ECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCe-EEEecCCCCcccceeeEEeeCc-
Q 013717 223 -GLIYSV--SWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRK-IRVWAKPFNEKRHALIATLEKH- 296 (437)
Q Consensus 223 -~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~-v~iwd~~~~~~~~~~~~~~~~~- 296 (437)
.+++.= ...|.|.+||+.+.+.+..+..|++.+-+++|+++|. ||+++..|+ ||||.+..+. .+.+|+..
T Consensus 141 n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~----kl~eFRRG~ 216 (391)
T KOG2110|consen 141 NCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQ----KLYEFRRGT 216 (391)
T ss_pred CceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCcc----EeeeeeCCc
Confidence 455543 2468999999999999999999999999999999999 999999887 6899876554 45555533
Q ss_pred -cccEEEEEEccCCCEEEEEeCCCcEEEEECCC
Q 013717 297 -KSAVNALALSDDGTVLFSGACDRSILVWDRED 328 (437)
Q Consensus 297 -~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 328 (437)
...|.+++|+|++.+|++.+..++|+||.++.
T Consensus 217 ~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 217 YPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred eeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 35688999999999999999999999999874
No 186
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.81 E-value=7.9e-18 Score=159.51 Aligned_cols=300 Identities=17% Similarity=0.270 Sum_probs=200.2
Q ss_pred Ccceeeeec-CccCCeEEEEee---CCEEEEEecC-eEEEEeCCCC-----ceeeeeccccCCCCcccEEEEEEe--CCe
Q 013717 87 HLCINSVQL-GHKLPIGCIAVH---HNFLYAASSH-EINVYDRTGT-----TWTSINTFNDNDSSSGSVKSVTFC--DGK 154 (437)
Q Consensus 87 ~~~~~~~~~-~h~~~V~~l~~~---~~~l~s~~~d-~v~vwd~~~~-----~~~~~~~~~~~~~h~~~v~~l~~~--~~~ 154 (437)
..+.++..+ .|...|..++.+ +.++++||.| +|++||...- ..+...++ ......+.++... .+.
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~lty---s~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTY---SPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEE---eccCCceEEEEeccCCCe
Confidence 345677777 999999999998 5899999999 9999998752 12222232 2245677777776 445
Q ss_pred EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE-EeCC---C-eEEEEE
Q 013717 155 IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL-AVNN---G-LIYSVS 229 (437)
Q Consensus 155 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~---~-~l~~~~ 229 (437)
++.++.||.|++.+++........... .+. .- ....+.+.++ ++.. . .++.+.
T Consensus 1113 ~Av~t~DG~v~~~~id~~~~~~~~~~~----~ri-----------------~n-~~~~g~vv~m~a~~~~~~S~~lvy~T 1170 (1431)
T KOG1240|consen 1113 FAVSTKDGSVRVLRIDHYNVSKRVATQ----VRI-----------------PN-LKKDGVVVSMHAFTAIVQSHVLVYAT 1170 (1431)
T ss_pred EEEEcCCCeEEEEEccccccccceeee----eec-----------------cc-ccCCCceEEeecccccccceeEEEEE
Confidence 999999999999999863111100000 000 00 0122233333 3322 3 788888
Q ss_pred CCCcEEEEECCCcceEEEee--cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEee-CccccEEEEEE
Q 013717 230 WDKSLKIWRASDLRCLESIK--AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLE-KHKSAVNALAL 305 (437)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~i~~~~~ 305 (437)
.-+.|..||++.......++ ...+.|++++.+|.+. ++.|+..|.+.+||++.+. ++..+. ++..+|+.+..
T Consensus 1171 ~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~----~i~sw~~P~~~~i~~v~~ 1246 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRV----PILSWEHPARAPIRHVWL 1246 (1431)
T ss_pred eccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCc----eeecccCcccCCcceEEe
Confidence 89999999998877666654 3467899999999999 9999999999999998765 333332 35578888887
Q ss_pred ccC---CCEEEEE-e-CCCcEEEEECCCCccceEEeeee---------c------cc-ccceEEEEee-CCEEEEEeCCC
Q 013717 306 SDD---GTVLFSG-A-CDRSILVWDREDSANHMVVTGAL---------R------GH-GKAILCLINV-AGLLMSGSADR 363 (437)
Q Consensus 306 ~~~---~~~l~~~-~-~dg~i~i~d~~~~~~~~~~~~~~---------~------~~-~~~i~~~~~~-~~~l~~~~~dg 363 (437)
+|- ....+++ + ..+.|.+|++.++.+...+...- . .+ ...+.+.-.. +.++++|+.|.
T Consensus 1247 ~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~ 1326 (1431)
T KOG1240|consen 1247 CPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDM 1326 (1431)
T ss_pred eccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCcc
Confidence 773 2344444 4 57889999999886655543320 0 00 1112222223 33999999999
Q ss_pred cEEEeeCCCCCCe-----------------------------------------e----eee--------eecCCCCCee
Q 013717 364 TVRIWQRGSDGRF-----------------------------------------G----CLA--------VLEGHTKPVK 390 (437)
Q Consensus 364 ~i~iwd~~~~~~~-----------------------------------------~----~~~--------~~~~h~~~v~ 390 (437)
.|+.||......- . ... .-..|..+|+
T Consensus 1327 kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~It 1406 (1431)
T KOG1240|consen 1327 KIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPIT 1406 (1431)
T ss_pred ceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhh
Confidence 9999996542210 0 000 1124788999
Q ss_pred EEEEEccCCCCceEEEEEecCCCcEEEEe
Q 013717 391 SLTAVTEEGQNGVVSVFSGSLDGEIRAWQ 419 (437)
Q Consensus 391 ~l~~~~~~~~~~~~~l~s~~~dg~i~iw~ 419 (437)
+|++..... .+|++++.||.|++|.
T Consensus 1407 dma~~~~~q----~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1407 DMATLKSEQ----PLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hhhhhccCc----cEEEEecCCCeeeecC
Confidence 999987663 4999999999999995
No 187
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.3e-16 Score=146.74 Aligned_cols=288 Identities=19% Similarity=0.322 Sum_probs=211.5
Q ss_pred CccCCeEEEEee--CCEEEEEecC-eEEEEeCCC--CceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEe
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTG--TTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQ 168 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~--~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd 168 (437)
.|...++|.+++ ++++|+|..| .|.+|.--. ........+ .=|...|.++.|+.++ |++|+..|.+.+|.
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~l---HWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq 279 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLL---HWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQ 279 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEE---EecccccceeEEecCCceEeecccceEEEEEe
Confidence 788889999999 9999999999 999996543 211122222 3488999999999666 99999999999999
Q ss_pred CCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEE
Q 013717 169 LTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLE 246 (437)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~ 246 (437)
+.+++... +..-.++|..+.++| .+.+....|+.|.+....+.+...
T Consensus 280 ~~T~~kqf-------------------------------LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~ 328 (792)
T KOG1963|consen 280 LETGKKQF-------------------------------LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS 328 (792)
T ss_pred ecCCCccc-------------------------------ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhh
Confidence 99887222 123678899999998 788888899999999887766544
Q ss_pred Eeec-----------ccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEee-------CccccEEEEEEcc
Q 013717 247 SIKA-----------HEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLE-------KHKSAVNALALSD 307 (437)
Q Consensus 247 ~~~~-----------~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-------~~~~~i~~~~~~~ 307 (437)
++.+ ..+-.+.++++|.-. ++..+..|.|.+||+.++....+...... .+.-.++.++.+-
T Consensus 329 tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~ 408 (792)
T KOG1963|consen 329 TISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSR 408 (792)
T ss_pred hccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhc
Confidence 4432 233467788888444 88899999999999987664433322221 1223577888888
Q ss_pred CCCEEEEEeC--------C--CcEEEEECCCCccceEEeeee-cccccceEEEEeeC----CEEEEEeCCCcEEEeeCCC
Q 013717 308 DGTVLFSGAC--------D--RSILVWDREDSANHMVVTGAL-RGHGKAILCLINVA----GLLMSGSADRTVRIWQRGS 372 (437)
Q Consensus 308 ~~~~l~~~~~--------d--g~i~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~----~~l~~~~~dg~i~iwd~~~ 372 (437)
.|.++++.-. | -.+++|-.......+.+.... ..|...+....+.. ...++++.||.++||-+..
T Consensus 409 ~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~ 488 (792)
T KOG1963|consen 409 FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTD 488 (792)
T ss_pred cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEec
Confidence 8999998632 3 357789877665555554433 45665554444332 2889999999999998843
Q ss_pred CC-------CeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717 373 DG-------RFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 373 ~~-------~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
.+ .+.|...-.-|..++++++|+.+| -+++++.|+.|.+||..+.
T Consensus 489 ~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dG------slla~s~~~~Itiwd~~~~ 540 (792)
T KOG1963|consen 489 DSNIYKKSSNWTCKAIGSYHKTPITALCFSQDG------SLLAVSFDDTITIWDYDTK 540 (792)
T ss_pred ccccCcCccceEEeeeeccccCcccchhhcCCC------cEEEEecCCEEEEecCCCh
Confidence 22 355665555689999999999999 4888999999999999884
No 188
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=6.6e-19 Score=153.73 Aligned_cols=261 Identities=20% Similarity=0.276 Sum_probs=180.3
Q ss_pred eeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCC------CceeeeeccccCCCCcccEEEEEEeCCe--EEEE
Q 013717 91 NSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTG------TTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTA 158 (437)
Q Consensus 91 ~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~------~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~ 158 (437)
+..++ .|.+.|++++|. ...|++++.+ ++++|+++. ...+.+.+| .+|.++|.|+++..+. +++|
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tf---raH~gPVl~v~v~~n~~~~ysg 362 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTF---RAHEGPVLCVVVPSNGEHCYSG 362 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEE---ecccCceEEEEecCCceEEEee
Confidence 33466 899999999998 7899999999 999999932 233444444 8999999999999665 9999
Q ss_pred ecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEE
Q 013717 159 HQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKI 236 (437)
Q Consensus 159 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~i 236 (437)
+.||+|+.|++....-...... .......+.||.+.|+.+++++ ..|++++.||++++
T Consensus 363 g~Dg~I~~w~~p~n~dp~ds~d--------------------p~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~ 422 (577)
T KOG0642|consen 363 GIDGTIRCWNLPPNQDPDDSYD--------------------PSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRL 422 (577)
T ss_pred ccCceeeeeccCCCCCcccccC--------------------cchhccceeccccceeeeeecccccceeeecCCceEEe
Confidence 9999999998763221100000 0011234568999999999998 88999999999999
Q ss_pred EECCCcceEEEeec--ccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEee-------CccccEEEEEE
Q 013717 237 WRASDLRCLESIKA--HEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLE-------KHKSAVNALAL 305 (437)
Q Consensus 237 wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-------~~~~~i~~~~~ 305 (437)
|+...... .++.. ..+.-.++.+-.... .++...-+.-.++++.... .+..+. .....+..+..
T Consensus 423 w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s----~~~~~~s~~~~~~~~~~~in~vVs 497 (577)
T KOG0642|consen 423 WEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVS----DLLIFESSASPGPRRYPQINKVVS 497 (577)
T ss_pred eccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhh----heeeccccCCCcccccCccceEEe
Confidence 99876655 33321 223334455432221 2222222333333332211 111111 11245778889
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeec
Q 013717 306 SDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLE 383 (437)
Q Consensus 306 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 383 (437)
.|.+.+.+++..|+.|+++|..++. +......|...+.+++..++ +|++++.|+.+++|.+.... ++....
T Consensus 498 ~~~~~~~~~~hed~~Ir~~dn~~~~----~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~---~~~es~ 570 (577)
T KOG0642|consen 498 HPTADITFTAHEDRSIRFFDNKTGK----ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT---CVLEST 570 (577)
T ss_pred cCCCCeeEecccCCceecccccccc----cchheeeccceecceeecCCCceEEeecCCceeehhhccchh---eeeccc
Confidence 9999999999999999999998877 55556678888888887765 99999999999999987644 555555
Q ss_pred CCC
Q 013717 384 GHT 386 (437)
Q Consensus 384 ~h~ 386 (437)
.|.
T Consensus 571 ~~r 573 (577)
T KOG0642|consen 571 AHR 573 (577)
T ss_pred ccc
Confidence 553
No 189
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.80 E-value=1.6e-17 Score=135.42 Aligned_cols=203 Identities=17% Similarity=0.208 Sum_probs=159.8
Q ss_pred ccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCc-eeeeeccccCCCCcccEEEEEEeCC--eEEEEecCCeEEEEeCC
Q 013717 97 HKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTT-WTSINTFNDNDSSSGSVKSVTFCDG--KIFTAHQDCKIRVWQLT 170 (437)
Q Consensus 97 h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~-~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~~~dg~i~iwd~~ 170 (437)
-..+|+|.+|+ +..+|.+-.+ .|.||...... ++...++ ..|...|++|+|.+. +|++|+.|..-++|...
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htl---s~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTL---SEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceeh---hhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 35789999999 7888888888 99999998876 7777777 679999999999965 49999999999999984
Q ss_pred CC-cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceE--
Q 013717 171 PT-KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCL-- 245 (437)
Q Consensus 171 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~-- 245 (437)
.+ +-...+ ++..+....+++.|+| +.+++|+....|.||-.+..+--
T Consensus 86 ~~~~Wkptl----------------------------vLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWV 137 (361)
T KOG1523|consen 86 SGGTWKPTL----------------------------VLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWV 137 (361)
T ss_pred CCCeeccce----------------------------eEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceeh
Confidence 33 322222 2235888999999999 99999999999999977654321
Q ss_pred --EEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCC--------------cccceeeEEeeCccccEEEEEEccC
Q 013717 246 --ESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFN--------------EKRHALIATLEKHKSAVNALALSDD 308 (437)
Q Consensus 246 --~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~--------------~~~~~~~~~~~~~~~~i~~~~~~~~ 308 (437)
+.-+.+...|+++.|+|++- +++|+.|+..++|..--. ..-+.++.++....+.+..+.|+|+
T Consensus 138 sKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~s 217 (361)
T KOG1523|consen 138 SKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPS 217 (361)
T ss_pred hhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCC
Confidence 12235678899999999998 999999999999953211 1112333444456788999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCc
Q 013717 309 GTVLFSGACDRSILVWDREDSA 330 (437)
Q Consensus 309 ~~~l~~~~~dg~i~i~d~~~~~ 330 (437)
|..|+-.+.|+.+.+-|...+.
T Consensus 218 G~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 218 GNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CCEeeEecCCCceEEeecCCCc
Confidence 9999999999999999987654
No 190
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.80 E-value=5.2e-16 Score=144.81 Aligned_cols=280 Identities=31% Similarity=0.525 Sum_probs=209.4
Q ss_pred CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCc-ccEEEEEE-eCCe---EEEE-ecCCeEEE
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSS-GSVKSVTF-CDGK---IFTA-HQDCKIRV 166 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~-~~v~~l~~-~~~~---l~s~-~~dg~i~i 166 (437)
+|...|.++.+. +..++.++.+ .+.+|+...+. .....+ ..+. ..+..+.+ .++. ++.. ..|+.+.+
T Consensus 63 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 138 (466)
T COG2319 63 GHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE-KLIKSL---EGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL 138 (466)
T ss_pred eccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc-eeEEEE---eccCCCceeeEEEECCCcceEEeccCCCCccEEE
Confidence 899999999999 8888888878 99999999863 133333 2222 46666666 4322 3443 44999999
Q ss_pred EeCCC-CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEEC-CCcEEEEECCCc
Q 013717 167 WQLTP-TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSW-DKSLKIWRASDL 242 (437)
Q Consensus 167 wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~-dg~i~iwd~~~~ 242 (437)
|+... .... ..+..|...|..+++.+ ..+++++. |+.+++|++..+
T Consensus 139 ~~~~~~~~~~------------------------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (466)
T COG2319 139 WDLSTPGKLI------------------------------RTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG 188 (466)
T ss_pred EEecCCCeEE------------------------------EEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC
Confidence 99986 2221 22246899999999999 57777775 999999999998
Q ss_pred ceEEEeecccccEEEEEEecCCe-EEEE-eCCCeEEEecCCCCcccceeeE-EeeCccccEEEEEEccCCCEEEEEeCCC
Q 013717 243 RCLESIKAHEDAVNAVAVSAGGT-VYTG-SADRKIRVWAKPFNEKRHALIA-TLEKHKSAVNALALSDDGTVLFSGACDR 319 (437)
Q Consensus 243 ~~~~~~~~~~~~v~~~~~~~~~~-l~~~-~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg 319 (437)
+.+..+..|...|.+++++|++. ++.+ +.|+.|++||.... .... .+..|.... ...|+|++.++++++.|+
T Consensus 189 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~ 263 (466)
T COG2319 189 KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG----KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDG 263 (466)
T ss_pred ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC----cEEeeecCCCCcce-eEeECCCCCEEEEecCCC
Confidence 88889888999999999999996 5554 89999999976522 3444 566777665 448999998999999999
Q ss_pred cEEEEECCCCccceEEeeeecccccceEEEEeeC--CEEEEEeCCCcEEEeeCCCCCCeeeeeee--cCCCCCeeEEEEE
Q 013717 320 SILVWDREDSANHMVVTGALRGHGKAILCLINVA--GLLMSGSADRTVRIWQRGSDGRFGCLAVL--EGHTKPVKSLTAV 395 (437)
Q Consensus 320 ~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~h~~~v~~l~~~ 395 (437)
.+++|+++........ ..+|...+.++.+.+ ..+++++.|+.+++|+..... ..... ..|...+..+.|
T Consensus 264 ~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~- 336 (466)
T COG2319 264 TIRLWDLRSSSSLLRT---LSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK---LLSSLTLKGHEGPVSSLSF- 336 (466)
T ss_pred cEEEeeecCCCcEEEE---EecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc---eEEEeeecccCCceEEEEE-
Confidence 9999999876541111 156788888888876 477778889999999888766 33333 478888999999
Q ss_pred ccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 396 TEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 396 ~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
+.... .++..+..|+.+++|++....
T Consensus 337 ~~~~~---~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 337 SPDGS---LLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred CCCCC---EEEEeecCCCcEEeeecCCCc
Confidence 53212 244444788999999998775
No 191
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.80 E-value=8.5e-16 Score=127.83 Aligned_cols=231 Identities=15% Similarity=0.191 Sum_probs=170.1
Q ss_pred CCeEEEEee--CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecC--CeEEEEeCCCCcc
Q 013717 99 LPIGCIAVH--HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQD--CKIRVWQLTPTKH 174 (437)
Q Consensus 99 ~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~d--g~i~iwd~~~~~~ 174 (437)
..+..+.|+ ...|..|+.+--++|+.+... . +.........|..+-|+...++..+.+ ..+++.+.+.+..
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~--k---~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDGYKIFSCSPFE--K---CFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred cceeeeeeccceeEEEccCCCceeEEecCchH--H---hhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCce
Confidence 445666677 566777777788899887732 1 211133456778888888875544433 4588888876654
Q ss_pred cccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEee---cc
Q 013717 175 HKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIK---AH 251 (437)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~ 251 (437)
+..+. ...+|.++.++.+.|+++-.+. |+|||+++.+.++++. .+
T Consensus 81 ICe~~-------------------------------fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n 128 (391)
T KOG2110|consen 81 ICEIF-------------------------------FPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPPN 128 (391)
T ss_pred EEEEe-------------------------------cCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCCC
Confidence 44332 5568999999997777776655 9999999999998886 34
Q ss_pred cccEEEEEEecCCe-EEEE--eCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCc-EEEEECC
Q 013717 252 EDAVNAVAVSAGGT-VYTG--SADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRS-ILVWDRE 327 (437)
Q Consensus 252 ~~~v~~~~~~~~~~-l~~~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d~~ 327 (437)
...+.++.+++.+. ++.- ...|.|.+||...- +....+..|.+.+.+++|+++|.+||+++..|+ |+||.+.
T Consensus 129 ~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl----~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~ 204 (391)
T KOG2110|consen 129 PKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINL----QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVP 204 (391)
T ss_pred ccceEeeccCCCCceEEecCCCCCceEEEEEcccc----eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcC
Confidence 45577777776655 5442 34699999977543 467788899999999999999999999999987 5899999
Q ss_pred CCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCC
Q 013717 328 DSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGS 372 (437)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~ 372 (437)
+++....+.+... ...|.+++|+++ +|++.+..++|.||.++.
T Consensus 205 ~G~kl~eFRRG~~--~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 205 EGQKLYEFRRGTY--PVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CccEeeeeeCCce--eeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 8886666544322 456777887765 999999999999998765
No 192
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.79 E-value=6.3e-16 Score=138.43 Aligned_cols=273 Identities=10% Similarity=0.163 Sum_probs=166.4
Q ss_pred EEEE-ecC-eEEEEeCCC-CceeeeeccccCCCCcccEEEEEEeCCe--EEEE-ecCCeEEEEeCCCCcccccccccCcc
Q 013717 111 LYAA-SSH-EINVYDRTG-TTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTA-HQDCKIRVWQLTPTKHHKLKTTLPTV 184 (437)
Q Consensus 111 l~s~-~~d-~v~vwd~~~-~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~ 184 (437)
++++ ..+ .|.+||+.+ ++...+..+ .+.+....+++++++ |+++ ..++.|.+|+++...........
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~----~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~--- 76 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVV----DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES--- 76 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEE----ecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee---
Confidence 3444 456 999999964 444555554 234567788999765 5444 45889999999732111111111
Q ss_pred ccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE-CCCcEEEEECCCc----ceEEEeecccccEEE
Q 013717 185 NDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS-WDKSLKIWRASDL----RCLESIKAHEDAVNA 257 (437)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~----~~~~~~~~~~~~v~~ 257 (437)
........+++++ +++++++ .++.|.+|++.+. +.+..+. +......
T Consensus 77 -------------------------~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~ 130 (330)
T PRK11028 77 -------------------------PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHS 130 (330)
T ss_pred -------------------------cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccE
Confidence 1222456788887 6666665 4899999999642 2223222 2345677
Q ss_pred EEEecCCe-E-EEEeCCCeEEEecCCCCcccce---eeEEeeCccccEEEEEEccCCCEEEEEeC-CCcEEEEECCCCcc
Q 013717 258 VAVSAGGT-V-YTGSADRKIRVWAKPFNEKRHA---LIATLEKHKSAVNALALSDDGTVLFSGAC-DRSILVWDREDSAN 331 (437)
Q Consensus 258 ~~~~~~~~-l-~~~~~dg~v~iwd~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~ 331 (437)
++++|+++ + ++...++.|.+||+........ ...... .......++|+|+|++++++.. ++.|.+|++.....
T Consensus 131 ~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~ 209 (330)
T PRK11028 131 ANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHG 209 (330)
T ss_pred eEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCC
Confidence 88999998 4 5556679999999875321100 001111 2345678999999999988876 89999999974322
Q ss_pred ceEEeeeeccc------ccce--EEEEeeCCEEEEEeC-CCcEEEeeCCCCC-CeeeeeeecCCCCCeeEEEEEccCCCC
Q 013717 332 HMVVTGALRGH------GKAI--LCLINVAGLLMSGSA-DRTVRIWQRGSDG-RFGCLAVLEGHTKPVKSLTAVTEEGQN 401 (437)
Q Consensus 332 ~~~~~~~~~~~------~~~i--~~~~~~~~~l~~~~~-dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~ 401 (437)
.......+..+ .... ..+.+++++++++.. ++.|.+|++.... ....+..... ......+.++|++..
T Consensus 210 ~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~- 287 (330)
T PRK11028 210 EIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKY- 287 (330)
T ss_pred CEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCE-
Confidence 22222222111 1122 234455567777754 7899999996543 2222332222 124567899998852
Q ss_pred ceEEEEEecCCCcEEEEeecc
Q 013717 402 GVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 402 ~~~~l~s~~~dg~i~iw~~~~ 422 (437)
++++...+++|.+|+++.
T Consensus 288 ---l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 288 ---LIAAGQKSHHISVYEIDG 305 (330)
T ss_pred ---EEEEEccCCcEEEEEEcC
Confidence 444455589999999863
No 193
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=4.5e-17 Score=152.30 Aligned_cols=283 Identities=17% Similarity=0.223 Sum_probs=198.1
Q ss_pred cceeeccccccccccCCCceeEEecCCCcceeeeec---CccCCeEEEEee----CCEEEEEecC-eEEEEeCCCC---c
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL---GHKLPIGCIAVH----HNFLYAASSH-EINVYDRTGT---T 128 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~---~h~~~V~~l~~~----~~~l~s~~~d-~v~vwd~~~~---~ 128 (437)
..+.|+|-.+.+++....-.|.+|+.+........- .-...|+.+.+- ..+|.+|+.| .|+||+--.. +
T Consensus 1068 k~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~ 1147 (1387)
T KOG1517|consen 1068 KTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKK 1147 (1387)
T ss_pred ceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCC
Confidence 467888999999988888899999998765543333 235679999886 5789999999 9999975432 2
Q ss_pred eeeeeccccCCCCc----ccEEEEEEe--CCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEee
Q 013717 129 WTSINTFNDNDSSS----GSVKSVTFC--DGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRR 202 (437)
Q Consensus 129 ~~~~~~~~~~~~h~----~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (437)
.+.+..+..+.++. +.=.-+.|. .+.|+++|.-..|+|||....+....+.
T Consensus 1148 ~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP----------------------- 1204 (1387)
T KOG1517|consen 1148 PELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIP----------------------- 1204 (1387)
T ss_pred ceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecc-----------------------
Confidence 33333333322221 111233454 3447777778999999998765443332
Q ss_pred ccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcc---eEEEeeccccc--EEEEEEecCCe--EEEEeCC
Q 013717 203 HKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLR---CLESIKAHEDA--VNAVAVSAGGT--VYTGSAD 272 (437)
Q Consensus 203 ~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~--v~~~~~~~~~~--l~~~~~d 272 (437)
.+.+..|+++.-+- +.+++|..||.|++||.+... .+...+.|... |..+.+.+.|. |++|+.+
T Consensus 1205 ------~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~ 1278 (1387)
T KOG1517|consen 1205 ------YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQD 1278 (1387)
T ss_pred ------cCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccC
Confidence 23555677776543 899999999999999987543 45666778777 99999998776 9999999
Q ss_pred CeEEEecCCCCcccceeeEEee--CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEe-ee-ecccccceEE
Q 013717 273 RKIRVWAKPFNEKRHALIATLE--KHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVT-GA-LRGHGKAILC 348 (437)
Q Consensus 273 g~v~iwd~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~-~~~~~~~i~~ 348 (437)
|.|++||++..... ....... ...+..+++..+++...+++|+. +.|+||++.......... .. .....+.+.|
T Consensus 1279 G~I~~~DlR~~~~e-~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~sc 1356 (1387)
T KOG1517|consen 1279 GDIQLLDLRMSSKE-TFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSC 1356 (1387)
T ss_pred CeEEEEecccCccc-ccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcce
Confidence 99999999874221 1111111 12346999999999999999988 999999987543221110 01 1123455689
Q ss_pred EEeeCC--EEEEEeCCCcEEEeeCCCC
Q 013717 349 LINVAG--LLMSGSADRTVRIWQRGSD 373 (437)
Q Consensus 349 ~~~~~~--~l~~~~~dg~i~iwd~~~~ 373 (437)
+.|++. ++|+|+.|.+|.||.....
T Consensus 1357 L~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1357 LAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred eeecchhHhhhhccCCceEEEeecCCc
Confidence 999987 8899999999999987754
No 194
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=9.4e-18 Score=137.83 Aligned_cols=196 Identities=15% Similarity=0.231 Sum_probs=156.8
Q ss_pred CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecC-C-e-EEEEeCCCeEEEecCCCCcccceeeEEeeCcc-c
Q 013717 223 GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAG-G-T-VYTGSADRKIRVWAKPFNEKRHALIATLEKHK-S 298 (437)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~-~-~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~ 298 (437)
..++++...|.|++||..+++.+..++++...++.++|..+ + . +.+++.||+|++||++...+. ....+..+. .
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~--a~~~~~~~~~~ 118 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES--ARISWTQQSGT 118 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh--hheeccCCCCC
Confidence 56888999999999999999999999999999999999864 3 3 999999999999999876543 233344444 5
Q ss_pred cEEEEEEccCCCEEEEEeC----CCcEEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEEeCCCcEEEeeCC
Q 013717 299 AVNALALSDDGTVLFSGAC----DRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGSADRTVRIWQRG 371 (437)
Q Consensus 299 ~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~ 371 (437)
+..+++..-.++.+++|.. +-.|.+||++..+... ..-...|...|+++.|++. +|++|+.||.|.+||++
T Consensus 119 ~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l--~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 119 PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLL--RQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred cceEeeccCcCCeEEeccccccCceEEEEEEeccccchh--hhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence 6677777767788888864 6789999999866532 2224679999999999865 99999999999999998
Q ss_pred CCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCC
Q 013717 372 SDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPN 426 (437)
Q Consensus 372 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 426 (437)
....-..+...-.|...|..+.|..++-. .|.+-+.+++..+|+++.+.+.
T Consensus 197 ~d~EeDaL~~viN~~sSI~~igw~~~~yk----rI~clTH~Etf~~~ele~~~~~ 247 (376)
T KOG1188|consen 197 KDNEEDALLHVINHGSSIHLIGWLSKKYK----RIMCLTHMETFAIYELEDGSEE 247 (376)
T ss_pred CCcchhhHHHhhcccceeeeeeeecCCcc----eEEEEEccCceeEEEccCCChh
Confidence 76544444444558888999999988754 5888899999999999988753
No 195
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.78 E-value=5.2e-17 Score=141.19 Aligned_cols=216 Identities=16% Similarity=0.173 Sum_probs=150.5
Q ss_pred eEEEEee--CCEEEEEecCeEEEEeCCCC--ceeeeeccccCCCCcccEEEEEEe-----CCe--EEEEecCCeEEEEeC
Q 013717 101 IGCIAVH--HNFLYAASSHEINVYDRTGT--TWTSINTFNDNDSSSGSVKSVTFC-----DGK--IFTAHQDCKIRVWQL 169 (437)
Q Consensus 101 V~~l~~~--~~~l~s~~~d~v~vwd~~~~--~~~~~~~~~~~~~h~~~v~~l~~~-----~~~--l~s~~~dg~i~iwd~ 169 (437)
+....++ |++|+-.-.+.+.+|+...+ ..+.+... .-......|-+|. ++. ++.|-.-|.|.+.|.
T Consensus 126 ~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~---~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp 202 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKR---EYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDP 202 (636)
T ss_pred eeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhh---cccCCCCceecccccccCCCCcceEEeeccCceEEecc
Confidence 4444455 77777766668888888743 11122111 1122334444453 232 888888899998887
Q ss_pred CCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCC-----
Q 013717 170 TPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASD----- 241 (437)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~----- 241 (437)
...+..+.+.... .-....|+|+.|-+ ..++++-.+|.+.+||..-
T Consensus 203 ~~~~~sklfne~r--------------------------~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t 256 (636)
T KOG2394|consen 203 INFEVSKLFNEER--------------------------LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGAT 256 (636)
T ss_pred hhhHHHHhhhhcc--------------------------cccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCC
Confidence 6533222221100 01347899999977 7888888999999997631
Q ss_pred ---------c--------------ceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCcc
Q 013717 242 ---------L--------------RCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHK 297 (437)
Q Consensus 242 ---------~--------------~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 297 (437)
+ .++..+....+.|+.++|+|||+ ||+.+.||.++|||.... +++..++..-
T Consensus 257 ~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~----eLlg~mkSYF 332 (636)
T KOG2394|consen 257 APSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ----ELLGVMKSYF 332 (636)
T ss_pred CCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH----HHHHHHHhhc
Confidence 0 11222333456899999999999 999999999999987643 3455555566
Q ss_pred ccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC
Q 013717 298 SAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA 353 (437)
Q Consensus 298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 353 (437)
+...|++|+|||+||++|++|.-|.||.+...+ +...-++|..+|..++|++
T Consensus 333 GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erR----VVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 333 GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERR----VVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cceEEEEEcCCccEEEecCCcceEEEEEeccce----EEEeccccccceeeEeecc
Confidence 889999999999999999999999999997554 6666789999999999997
No 196
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.78 E-value=4.6e-19 Score=161.39 Aligned_cols=240 Identities=20% Similarity=0.328 Sum_probs=188.9
Q ss_pred CCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcE
Q 013717 138 NDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAV 215 (437)
Q Consensus 138 ~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 215 (437)
+.+|..+|.|..|.-.+ +++|+.|..++||..++..+..... ||.+.|
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~r------------------------------Ghs~di 235 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCR------------------------------GHSGDI 235 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCC------------------------------CCcccc
Confidence 37899999999998433 9999999999999988876554443 799999
Q ss_pred EEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEe
Q 013717 216 TGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATL 293 (437)
Q Consensus 216 ~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 293 (437)
+.++.+. -++++++.|..|++|.+.++.++..+.+|.+.|++++|+|-. +.+.||++++||.+.......+...-
T Consensus 236 tdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r~~~~~y~prp~~ 312 (1113)
T KOG0644|consen 236 TDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVPRPLK 312 (1113)
T ss_pred chhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc---cCCCCCceEeccccccccccCCCCCC
Confidence 9999977 778899999999999999999999999999999999999864 77889999999987322111110000
Q ss_pred eCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee---CCEEEEEeCCCcEEEeeC
Q 013717 294 EKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV---AGLLMSGSADRTVRIWQR 370 (437)
Q Consensus 294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~l~~~~~dg~i~iwd~ 370 (437)
.....-+.++.|..++..+++++.|+.-..|.+..... +...+.-.... ..+.+++-.+-.+++|++
T Consensus 313 ~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~----------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl 382 (1113)
T KOG0644|consen 313 FTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW----------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNL 382 (1113)
T ss_pred cccccceeeeeccccccccccccCCcccccchhhHhhh----------hccceEEEeccccccccceeeeeeeEeeeeec
Confidence 11235577788888899999999999999998753211 11111111111 136677777889999999
Q ss_pred CCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCCC
Q 013717 371 GSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNS 427 (437)
Q Consensus 371 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 427 (437)
.++. +...+.+|...+..+.++|-++. ...+++.||...|||+-.+.|..
T Consensus 383 ~~g~---l~H~l~ghsd~~yvLd~Hpfn~r----i~msag~dgst~iwdi~eg~pik 432 (1113)
T KOG0644|consen 383 YTGQ---LLHNLMGHSDEVYVLDVHPFNPR----IAMSAGYDGSTIIWDIWEGIPIK 432 (1113)
T ss_pred ccch---hhhhhcccccceeeeeecCCCcH----hhhhccCCCceEeeecccCCcce
Confidence 9877 78889999999999999998874 88999999999999999887754
No 197
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.77 E-value=1.6e-16 Score=133.52 Aligned_cols=276 Identities=15% Similarity=0.183 Sum_probs=191.2
Q ss_pred ccceeeccccc-cccccCCCceeEEecCCC--------cceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCC
Q 013717 59 NLSLQTLPSVP-SLQKLSPDETINFSSASH--------LCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRT 125 (437)
Q Consensus 59 ~~~~~~~~~~~-~~~s~s~dg~i~~~~~~~--------~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~ 125 (437)
..++.|++... .+++++.|..|++|.... .-.....| .|...|+++.|+ |++||+|+++ .|.+|...
T Consensus 16 v~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~ 95 (434)
T KOG1009|consen 16 VYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQG 95 (434)
T ss_pred eEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEec
Confidence 34667777666 899999999999999822 12334455 899999999999 8899999999 99999877
Q ss_pred --------C------CceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCcccccee
Q 013717 126 --------G------TTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLL 189 (437)
Q Consensus 126 --------~------~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 189 (437)
+ ..+...+.+ .+|...|..++|+++. +++++.|..+++||+..++......
T Consensus 96 ~~~~~~~d~e~~~~ke~w~v~k~l---r~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~---------- 162 (434)
T KOG1009|consen 96 DVRIFDADTEADLNKEKWVVKKVL---RGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILD---------- 162 (434)
T ss_pred CcCCccccchhhhCccceEEEEEe---cccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecc----------
Confidence 1 223333443 6799999999999776 9999999999999999987555443
Q ss_pred eecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee--------c---------
Q 013717 190 RFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK--------A--------- 250 (437)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~--------- 250 (437)
+|...+..++|+| .++++-+.|...+.+.+...+.+.... .
T Consensus 163 --------------------dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~r 222 (434)
T KOG1009|consen 163 --------------------DHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTR 222 (434)
T ss_pred --------------------ccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceee
Confidence 6999999999999 888888888877777765443322211 0
Q ss_pred --cc----ccEEEEEEecCCe-EEEEeC----CCe-----EEEecCCCCcccceeeEEeeCccccEEEEEEcc-------
Q 013717 251 --HE----DAVNAVAVSAGGT-VYTGSA----DRK-----IRVWAKPFNEKRHALIATLEKHKSAVNALALSD------- 307 (437)
Q Consensus 251 --~~----~~v~~~~~~~~~~-l~~~~~----dg~-----v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~------- 307 (437)
|. .-..-++|+|+|. +++... .+. .++|+- .....+...+.....+...+.|+|
T Consensus 223 LfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsr---k~l~rP~~~lp~~~k~~lavr~~pVy~elrp 299 (434)
T KOG1009|consen 223 LFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSR---KDLKRPAARLPSPKKPALAVRFSPVYYELRP 299 (434)
T ss_pred eeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecc---ccccCceeecCCCCcceEEEEeeeeEEEecc
Confidence 11 1234567888888 555432 222 234432 122233444444455555566555
Q ss_pred -----------CCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCC
Q 013717 308 -----------DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 308 -----------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 374 (437)
-+-.++.++ ...|++||.+......... .-|-..++.++|+++ .++..+.||...+--++..+
T Consensus 300 ~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~---nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 300 LSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVD---NIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred ccccccccccccceEEEEee-cceEEEeccccccceEEEe---eeeeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence 122345554 4579999998765443332 337788888888866 99999999988877766544
No 198
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.77 E-value=1.1e-16 Score=142.77 Aligned_cols=259 Identities=12% Similarity=0.163 Sum_probs=193.3
Q ss_pred cceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeecc
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTF 135 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~ 135 (437)
..+.|.|....+. +..+..+.++|.+.. .+.+++ ||.+.|+|++|+ |+.+|+|+.| .|.+|+.+- +-+..+
T Consensus 16 ~d~afkPDGsqL~-lAAg~rlliyD~ndG-~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~kl---EG~LkY 90 (1081)
T KOG1538|consen 16 NDIAFKPDGTQLI-LAAGSRLLVYDTSDG-TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKL---EGILKY 90 (1081)
T ss_pred heeEECCCCceEE-EecCCEEEEEeCCCc-ccccccccccceEEEEEEccCCceeccCCCceeEEEecccc---cceeee
Confidence 4578888888776 444567888888764 455666 999999999999 9999999999 999999765 222232
Q ss_pred ccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCC
Q 013717 136 NDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGD 213 (437)
Q Consensus 136 ~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (437)
.|...|.|+.|+|=. |++++-. ..-+|..+.....+. ....
T Consensus 91 ----SH~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~--------------------------------kss~ 133 (1081)
T KOG1538|consen 91 ----SHNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKH--------------------------------KSSS 133 (1081)
T ss_pred ----ccCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhh--------------------------------hhhe
Confidence 599999999999754 7777653 577898765432211 1445
Q ss_pred cEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee---cccccEEEEEEecCC-----e-EEEEeCCCeEEEecCCC
Q 013717 214 AVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK---AHEDAVNAVAVSAGG-----T-VYTGSADRKIRVWAKPF 282 (437)
Q Consensus 214 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~-----~-l~~~~~dg~v~iwd~~~ 282 (437)
.|.+++|.. .+++.|-.+|+|.|-+- +++....+. +.+.+|++++|+|.. . +++.....++.+|.+..
T Consensus 134 R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG 212 (1081)
T KOG1538|consen 134 RIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG 212 (1081)
T ss_pred eEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc
Confidence 788889977 89999999999999875 444444443 467899999999853 2 77888888888887653
Q ss_pred CcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC--CEEEEEe
Q 013717 283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA--GLLMSGS 360 (437)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~ 360 (437)
+.+..-+...-...|+.+.++|.+++.|+.|+.+++|--+. ...+.......+|+.+...| +.++.|.
T Consensus 213 -----~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~G-----vrLGTvg~~D~WIWtV~~~PNsQ~v~~GC 282 (1081)
T KOG1538|consen 213 -----KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDG-----VRLGTVGEQDSWIWTVQAKPNSQYVVVGC 282 (1081)
T ss_pred -----eeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecC-----eEEeeccccceeEEEEEEccCCceEEEEE
Confidence 23333333445678999999999999999999999997432 24444555667777776554 5999999
Q ss_pred CCCcEEEeeCC
Q 013717 361 ADRTVRIWQRG 371 (437)
Q Consensus 361 ~dg~i~iwd~~ 371 (437)
.||+|..|++-
T Consensus 283 qDGTiACyNl~ 293 (1081)
T KOG1538|consen 283 QDGTIACYNLI 293 (1081)
T ss_pred ccCeeehhhhH
Confidence 99999999864
No 199
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.76 E-value=4.9e-15 Score=132.68 Aligned_cols=269 Identities=10% Similarity=0.125 Sum_probs=168.4
Q ss_pred cccCCCceeEEecCCCcc--eeeeecCccCCeEEEEee--CCEEEEEec-C-eEEEEeCC-CCceeeeeccccCCCCccc
Q 013717 72 QKLSPDETINFSSASHLC--INSVQLGHKLPIGCIAVH--HNFLYAASS-H-EINVYDRT-GTTWTSINTFNDNDSSSGS 144 (437)
Q Consensus 72 ~s~s~dg~i~~~~~~~~~--~~~~~~~h~~~V~~l~~~--~~~l~s~~~-d-~v~vwd~~-~~~~~~~~~~~~~~~h~~~ 144 (437)
++-..++.|.+|+..... ..+..+.+.+....++++ +++|++++. + .|.+|+++ ++.+...... ...+.
T Consensus 6 ~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~----~~~~~ 81 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES----PLPGS 81 (330)
T ss_pred EEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee----cCCCC
Confidence 334668999999996433 344555555677888888 788877764 4 99999997 3334333332 13345
Q ss_pred EEEEEEeCCe--EEEEe-cCCeEEEEeCCCCccc-ccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe
Q 013717 145 VKSVTFCDGK--IFTAH-QDCKIRVWQLTPTKHH-KLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV 220 (437)
Q Consensus 145 v~~l~~~~~~--l~s~~-~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (437)
...+++++++ +++++ .++.|.+|++++.... ...... .+.....++++
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~----------------------------~~~~~~~~~~~ 133 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII----------------------------EGLEGCHSANI 133 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec----------------------------cCCCcccEeEe
Confidence 6789999665 55554 4899999999743211 111110 12234566778
Q ss_pred CC--CeEEEE-ECCCcEEEEECCCcceEEE-----ee-cccccEEEEEEecCCe-EEEEeC-CCeEEEecCCCCccccee
Q 013717 221 NN--GLIYSV-SWDKSLKIWRASDLRCLES-----IK-AHEDAVNAVAVSAGGT-VYTGSA-DRKIRVWAKPFNEKRHAL 289 (437)
Q Consensus 221 ~~--~~l~~~-~~dg~i~iwd~~~~~~~~~-----~~-~~~~~v~~~~~~~~~~-l~~~~~-dg~v~iwd~~~~~~~~~~ 289 (437)
+| ++++++ ..++.|.+||+.+...+.. .. ........++|+|+++ ++++.. ++.|.+||++......+.
T Consensus 134 ~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~ 213 (330)
T PRK11028 134 DPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIEC 213 (330)
T ss_pred CCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEE
Confidence 87 566544 4569999999976432211 11 1234467899999998 656655 899999998743222233
Q ss_pred eEEeeCc------cccEEEEEEccCCCEEEEEeC-CCcEEEEECCCCccceEEeeeec-ccccceEEEEeeCCEEEEEeC
Q 013717 290 IATLEKH------KSAVNALALSDDGTVLFSGAC-DRSILVWDREDSANHMVVTGALR-GHGKAILCLINVAGLLMSGSA 361 (437)
Q Consensus 290 ~~~~~~~------~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~l~~~~~ 361 (437)
+..+... ......+.++|+|++++++.. ++.|.+|++........+..... +....-..+..++++|+++..
T Consensus 214 ~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 214 VQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred EEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEc
Confidence 3333221 122346899999999998865 78999999965443333333322 112223455566777777665
Q ss_pred -CCcEEEeeCCC
Q 013717 362 -DRTVRIWQRGS 372 (437)
Q Consensus 362 -dg~i~iwd~~~ 372 (437)
+++|.+|++..
T Consensus 294 ~~~~v~v~~~~~ 305 (330)
T PRK11028 294 KSHHISVYEIDG 305 (330)
T ss_pred cCCcEEEEEEcC
Confidence 89999998863
No 200
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=3.6e-15 Score=137.38 Aligned_cols=334 Identities=12% Similarity=0.133 Sum_probs=225.9
Q ss_pred ceeeccccccccccCCCceeEEecCCC---cceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeee
Q 013717 61 SLQTLPSVPSLQKLSPDETINFSSASH---LCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSIN 133 (437)
Q Consensus 61 ~~~~~~~~~~~~s~s~dg~i~~~~~~~---~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~ 133 (437)
...++|....++++-.||.|.+|..-. .....+.+ =|.+.|.+++|+ |.+|.+|+.. .+.+|.+.+++.+.+.
T Consensus 210 ~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLP 289 (792)
T KOG1963|consen 210 CVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLP 289 (792)
T ss_pred eEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccccc
Confidence 468899999999999999999998733 23334444 789999999999 9999999999 9999999998755555
Q ss_pred ccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC
Q 013717 134 TFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH 211 (437)
Q Consensus 134 ~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (437)
. -.++|..+.++|+. .+....|..|.+....+......+..+....... -...
T Consensus 290 R------Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~-------------------k~~~ 344 (792)
T KOG1963|consen 290 R------LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPST-------------------KTRP 344 (792)
T ss_pred c------cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccc-------------------cccc
Confidence 4 46899999999776 6677789999999887665544444332110000 0123
Q ss_pred CCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee-----------cccccEEEEEEecCCe-EEEEe-------
Q 013717 212 GDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK-----------AHEDAVNAVAVSAGGT-VYTGS------- 270 (437)
Q Consensus 212 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~v~~~~~~~~~~-l~~~~------- 270 (437)
.+-.+.++++| +.++..+..|.|.+||+.+.+.+..+. .+...+++++.+-.|. ++++-
T Consensus 345 ~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~ 424 (792)
T KOG1963|consen 345 QSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFN 424 (792)
T ss_pred cccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhh
Confidence 44556778888 888888999999999998887776654 1123466777776776 55542
Q ss_pred -C--CCeEEEecCCCCcccceeeEEe-eCccccEEEEEEcc-C-CCEEEEEeCCCcEEEEECCC------CccceEEeee
Q 013717 271 -A--DRKIRVWAKPFNEKRHALIATL-EKHKSAVNALALSD-D-GTVLFSGACDRSILVWDRED------SANHMVVTGA 338 (437)
Q Consensus 271 -~--dg~v~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~-~-~~~l~~~~~dg~i~i~d~~~------~~~~~~~~~~ 338 (437)
. .-.+++|-...+...+.+...+ ..|...+...++.+ . ...+++++.||.++||-+.+ ....+.+...
T Consensus 425 ~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i 504 (792)
T KOG1963|consen 425 FFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAI 504 (792)
T ss_pred ccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeee
Confidence 2 3457889776666655555444 35776666666654 2 33899999999999999843 2333333333
Q ss_pred ecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEE
Q 013717 339 LRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRA 417 (437)
Q Consensus 339 ~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i 417 (437)
-..|..++.+..|+++ -+++.+.|++|.+||..+... +......-..++..+.+...... ...+.....+.+.+
T Consensus 505 ~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~ 579 (792)
T KOG1963|consen 505 GSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTKNE--LLCTEGSRNWPIAELLFTAQTQN---DGALVHATQQRLSV 579 (792)
T ss_pred eccccCcccchhhcCCCcEEEEecCCEEEEecCCChhh--hhccccccccchHhHhhhccccc---ccceeeccCceEeh
Confidence 3347778888888765 677788888999999988431 22222222333444333321110 12344445678888
Q ss_pred EeeccCC
Q 013717 418 WQVSVSC 424 (437)
Q Consensus 418 w~~~~~~ 424 (437)
|++-...
T Consensus 580 WNll~~~ 586 (792)
T KOG1963|consen 580 WNLLSMS 586 (792)
T ss_pred Hhhhhhh
Confidence 8876654
No 201
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.73 E-value=3.8e-16 Score=135.89 Aligned_cols=260 Identities=13% Similarity=0.153 Sum_probs=173.2
Q ss_pred CccCCeEEEEee--CCEEEEEecCe-EEEEeCCCCceeeeeccccCCCCcccEEEEEEe----CCeEEEEecCCeEEEEe
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSHE-INVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC----DGKIFTAHQDCKIRVWQ 168 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d~-v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~~~dg~i~iwd 168 (437)
.|...|.|+.|. ...+.+++++. +.-||+.....+.......+-.....+....-- .+.++.++.||.+.+.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il~ 91 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVILN 91 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEec
Confidence 577778899998 44455555554 444555443222221110000000001111111 12289999999999987
Q ss_pred CCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEE
Q 013717 169 LTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLE 246 (437)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~ 246 (437)
-.. +..+.+ ..|.+.+.+-.|++ .-|+++++||.|++|. ++|....
T Consensus 92 k~~-rVE~sv------------------------------~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRS 139 (737)
T KOG1524|consen 92 KSA-RVERSI------------------------------SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRS 139 (737)
T ss_pred ccc-hhhhhh------------------------------hhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHH
Confidence 542 222211 25999999999998 7899999999999998 4665555
Q ss_pred EeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEE
Q 013717 247 SIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD 325 (437)
Q Consensus 247 ~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 325 (437)
++.....+|.|++|.|+.. ++. +..+.+.|=-+..+ ..+..++.|.+-|.++.|++..+++++|++|-..+|||
T Consensus 140 tl~Q~~~~v~c~~W~p~S~~vl~-c~g~h~~IKpL~~n----~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD 214 (737)
T KOG1524|consen 140 TVVQNEESIRCARWAPNSNSIVF-CQGGHISIKPLAAN----SKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWD 214 (737)
T ss_pred HHhhcCceeEEEEECCCCCceEE-ecCCeEEEeecccc----cceeEEeccCcEEEEeecCccccceeecCCceeEEeec
Confidence 5656778999999999988 433 34456666544333 24557889999999999999999999999999999999
Q ss_pred CCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceE
Q 013717 326 REDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVV 404 (437)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~ 404 (437)
-... .......|..+|++++|+++ .++.++. +++| .-....+.|..++|++|+.+
T Consensus 215 ~~G~-----~Lf~S~~~ey~ITSva~npd~~~~v~S~-nt~R--------------~~~p~~GSifnlsWS~DGTQ---- 270 (737)
T KOG1524|consen 215 AQGA-----NLFTSAAEEYAITSVAFNPEKDYLLWSY-NTAR--------------FSSPRVGSIFNLSWSADGTQ---- 270 (737)
T ss_pred ccCc-----ccccCChhccceeeeeeccccceeeeee-eeee--------------ecCCCccceEEEEEcCCCce----
Confidence 7532 22234568899999999988 4444433 2343 11234678999999999964
Q ss_pred EEEEecCCCcEEE
Q 013717 405 SVFSGSLDGEIRA 417 (437)
Q Consensus 405 ~l~s~~~dg~i~i 417 (437)
++.|...|.+.+
T Consensus 271 -~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 271 -ATCGTSTGQLIV 282 (737)
T ss_pred -eeccccCceEEE
Confidence 777777777654
No 202
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=1.1e-15 Score=128.01 Aligned_cols=266 Identities=15% Similarity=0.175 Sum_probs=189.0
Q ss_pred CccCCeEEEEee----CCEEEEEecC-eEEEEeCCCCceeeee-ccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeC
Q 013717 96 GHKLPIGCIAVH----HNFLYAASSH-EINVYDRTGTTWTSIN-TFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQL 169 (437)
Q Consensus 96 ~h~~~V~~l~~~----~~~l~s~~~d-~v~vwd~~~~~~~~~~-~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~ 169 (437)
.....|.+++|. .+.|...+.+ .+..+.+......... .+.......++|..++..++.|++|-.+|.+.+|..
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~sG~l~~~~~ 132 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVSSGNLQVRHD 132 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEecCCcEEEEec
Confidence 556778888887 4566666566 7777777664222211 111113467889999999999999999999999999
Q ss_pred CCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECC--CcEEEEECCCcce
Q 013717 170 TPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWD--KSLKIWRASDLRC 244 (437)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~d--g~i~iwd~~~~~~ 244 (437)
..+...... .+.......+..+.-.+ ..+++|+.. ..+.|||+++.+.
T Consensus 133 k~~d~hss~---------------------------l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~q 185 (412)
T KOG3881|consen 133 KSGDLHSSK---------------------------LIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQ 185 (412)
T ss_pred cCCcccccc---------------------------ceeeecCCceeeeccCCCCCceEecCchhcccceeeeeccccee
Confidence 865421000 00011223444554444 677789998 8999999998866
Q ss_pred EEEeecc---------cccEEEEEEecC--Ce-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEE
Q 013717 245 LESIKAH---------EDAVNAVAVSAG--GT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVL 312 (437)
Q Consensus 245 ~~~~~~~---------~~~v~~~~~~~~--~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 312 (437)
+..-+.- .-.++++.|-+. .. |++++.-+.|++||.+... .++..+.-...+++++...|+|+++
T Consensus 186 iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR---RPV~~fd~~E~~is~~~l~p~gn~I 262 (412)
T KOG3881|consen 186 IWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR---RPVAQFDFLENPISSTGLTPSGNFI 262 (412)
T ss_pred eeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC---cceeEeccccCcceeeeecCCCcEE
Confidence 5554321 224667788766 44 9999999999999987443 5677777778999999999999999
Q ss_pred EEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCee
Q 013717 313 FSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVK 390 (437)
Q Consensus 313 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 390 (437)
++|..-|.+..||++.++.. ...+.+..+.+.++..++. ++++++-|..|||+|+.+.+ ++.... -...++
T Consensus 263 y~gn~~g~l~~FD~r~~kl~---g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk---ll~kvY-vKs~lt 335 (412)
T KOG3881|consen 263 YTGNTKGQLAKFDLRGGKLL---GCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK---LLHKVY-VKSRLT 335 (412)
T ss_pred EEecccchhheecccCceee---ccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch---hhhhhh-hhcccc
Confidence 99999999999999877632 2236777889999988877 99999999999999999855 332221 134566
Q ss_pred EEEEEccC
Q 013717 391 SLTAVTEE 398 (437)
Q Consensus 391 ~l~~~~~~ 398 (437)
+|.+.++.
T Consensus 336 ~il~~~~~ 343 (412)
T KOG3881|consen 336 FILLRDDV 343 (412)
T ss_pred EEEecCCc
Confidence 66665543
No 203
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.72 E-value=2.5e-16 Score=136.97 Aligned_cols=231 Identities=18% Similarity=0.234 Sum_probs=164.7
Q ss_pred CCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717 140 SSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL 218 (437)
Q Consensus 140 ~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 218 (437)
.|...|.|+.|..+. ++.++.|..+.+|.-.+..........+..- .+. .| +...
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~-------pt~--------------~h---~~~r 67 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFV-------PTD--------------MH---LGGR 67 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccC-------Ccc--------------cc---cccc
Confidence 477788899998665 7777777777777654443333222211100 000 01 1111
Q ss_pred EeC---C-CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEe
Q 013717 219 AVN---N-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATL 293 (437)
Q Consensus 219 ~~~---~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 293 (437)
... . ..++.++.||.+.|.+ +.++....+..|.+.+.+-.|+|||. |++++.||.|++|.-.. .+..++
T Consensus 68 s~~~g~~~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-----MLRStl 141 (737)
T KOG1524|consen 68 SSGGGKGSDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-----MLRSTV 141 (737)
T ss_pred ccCCCCCcceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc-----hHHHHH
Confidence 111 1 6788899999999998 46677777889999999999999999 99999999999996431 122333
Q ss_pred eCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCC
Q 013717 294 EKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRG 371 (437)
Q Consensus 294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~ 371 (437)
.....+|.|++|.|+.+-++-+. .+.+.|=.+.... ..-.+++|.+-|.+++|++. ++++|++|-..+|||..
T Consensus 142 ~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~----k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~ 216 (737)
T KOG1524|consen 142 VQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANS----KIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ 216 (737)
T ss_pred hhcCceeEEEEECCCCCceEEec-CCeEEEeeccccc----ceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc
Confidence 44677899999999887666553 4567776665433 33347889999999999865 99999999999999987
Q ss_pred CCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEE
Q 013717 372 SDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIR 416 (437)
Q Consensus 372 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~ 416 (437)
. ..+..-..|..+|++++|.|+. .++.++. .++|
T Consensus 217 G----~~Lf~S~~~ey~ITSva~npd~------~~~v~S~-nt~R 250 (737)
T KOG1524|consen 217 G----ANLFTSAAEEYAITSVAFNPEK------DYLLWSY-NTAR 250 (737)
T ss_pred C----cccccCChhccceeeeeecccc------ceeeeee-eeee
Confidence 5 3577778899999999999995 4555554 3555
No 204
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=9.2e-16 Score=128.54 Aligned_cols=252 Identities=13% Similarity=0.156 Sum_probs=176.5
Q ss_pred CCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717 139 DSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT 216 (437)
Q Consensus 139 ~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 216 (437)
.+|.+.|++|.|+.+. |++|+.|..+++|+++..-..+..+.+. +.. ..|...|.
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~-----------------~~~------~~H~SNIF 109 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG-----------------VME------HPHRSNIF 109 (609)
T ss_pred hhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCce-----------------ecc------CccccceE
Confidence 5799999999999544 9999999999999987432211111110 000 13678999
Q ss_pred EEEeCC--CeEEEEECCCcEEEEECCCcceEEEee--cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeE
Q 013717 217 GLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK--AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIA 291 (437)
Q Consensus 217 ~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~ 291 (437)
|++|+- .++++|..+++|...|+++.+.+..+. ...+.|+.+..+|-.. |++.+.++.|.+||.+.......++.
T Consensus 110 ~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~ 189 (609)
T KOG4227|consen 110 SLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVL 189 (609)
T ss_pred EEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceee
Confidence 999987 899999999999999999998887775 2345899999999766 99999999999999886553333322
Q ss_pred EeeCccccEEEEEEccC-CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccce---EEE--EeeCCEEEEEeCCCcE
Q 013717 292 TLEKHKSAVNALALSDD-GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI---LCL--INVAGLLMSGSADRTV 365 (437)
Q Consensus 292 ~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i---~~~--~~~~~~l~~~~~dg~i 365 (437)
..........+.|+|. -.+|++.+..+-+-+||.+..........-+.+..... +.. ..+|+.|++--....-
T Consensus 190 -~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P 268 (609)
T KOG4227|consen 190 -PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCP 268 (609)
T ss_pred -ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCC
Confidence 2335567889999995 45788888889999999987654332222222222211 233 3445566665555556
Q ss_pred EEeeCCCCCCeeeeeeecCCC-------CCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717 366 RIWQRGSDGRFGCLAVLEGHT-------KPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 366 ~iwd~~~~~~~~~~~~~~~h~-------~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
.+||+.+.. ..+..+. |. ..+.+++|..+. -+++|+++-.|++|++...
T Consensus 269 ~~~D~~S~R--~~V~k~D-~N~~GY~N~~T~KS~~F~~D~------~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 269 LYFDFISQR--CFVLKSD-HNPNGYCNIKTIKSMTFIDDY------TVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred EEeeeeccc--ceeEecc-CCCCcceeeeeeeeeeeecce------eeeccCcccceEEEecCCC
Confidence 678877633 1222222 22 257888888875 6999999999999998654
No 205
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.72 E-value=4.5e-17 Score=139.16 Aligned_cols=272 Identities=16% Similarity=0.170 Sum_probs=197.1
Q ss_pred EEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCccccc
Q 013717 102 GCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKL 177 (437)
Q Consensus 102 ~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~ 177 (437)
..+.|+ |++|+.|+.. .|-.+|+.++.+.+... -...|..+.|..+. +++......+.|||-...+ +.+
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~------v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtE-lHC 205 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN------VMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTE-LHC 205 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeee------hhhhhhhhhhhcchHHHHhhhhceEEEecCCCcE-Eee
Confidence 456666 8999999888 99999999965544433 35688999998544 7777888999999976443 333
Q ss_pred ccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccE
Q 013717 178 KTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAV 255 (437)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v 255 (437)
+. ....|..+.|-| -+|++++..|.++--|+.+|+.+..+....+.+
T Consensus 206 lk-------------------------------~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~ 254 (545)
T KOG1272|consen 206 LK-------------------------------RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRT 254 (545)
T ss_pred hh-------------------------------hcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCcc
Confidence 33 345788899988 667788889999999999999999998888899
Q ss_pred EEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceE
Q 013717 256 NAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMV 334 (437)
Q Consensus 256 ~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 334 (437)
..+.-+|-+- +-+|...|+|.+|... ..+++..+..|.++|.+|++.++|+|+++.+.|..++|||++.......
T Consensus 255 ~vm~qNP~NaVih~GhsnGtVSlWSP~----skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t 330 (545)
T KOG1272|consen 255 DVMKQNPYNAVIHLGHSNGTVSLWSPN----SKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHT 330 (545)
T ss_pred chhhcCCccceEEEcCCCceEEecCCC----CcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccce
Confidence 9999999888 8889999999999654 3346666778999999999999999999999999999999987653333
Q ss_pred EeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCC--CCCeeEEEEEccCCCCceEEEEEecCC
Q 013717 335 VTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGH--TKPVKSLTAVTEEGQNGVVSVFSGSLD 412 (437)
Q Consensus 335 ~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~~~~~l~s~~~d 412 (437)
... ......++++..-+++.+....|.||.-........-..+..| .++|..+.|+|-.+ +|-.|-..
T Consensus 331 ~~t-----p~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~ED-----vLGIGH~~ 400 (545)
T KOG1272|consen 331 YRT-----PHPASNLSLSQKGLLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYED-----VLGIGHAG 400 (545)
T ss_pred eec-----CCCccccccccccceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHH-----eeeccccC
Confidence 221 2334556666665555666667999953322110111122222 34899999999874 45555555
Q ss_pred CcEEEEeeccCCC
Q 013717 413 GEIRAWQVSVSCP 425 (437)
Q Consensus 413 g~i~iw~~~~~~~ 425 (437)
|--.+.=.-.|+|
T Consensus 401 G~tsilVPGsGeP 413 (545)
T KOG1272|consen 401 GITSILVPGSGEP 413 (545)
T ss_pred CceeEeccCCCCC
Confidence 5444433333443
No 206
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.70 E-value=1.9e-15 Score=123.39 Aligned_cols=208 Identities=16% Similarity=0.140 Sum_probs=170.0
Q ss_pred CCCcEEEEEeCC--CeEEEEECCCcEEEEECCCc---ceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCc
Q 013717 211 HGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDL---RCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNE 284 (437)
Q Consensus 211 ~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~ 284 (437)
-..+|+|.+|++ ..++.+.....|.||..... +..+++..|...|+.+.|.|... |++++.|..-++|... ..
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~-~~ 87 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP-SG 87 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC-CC
Confidence 457899999998 78888888899999988665 46788889999999999999886 9999999999999875 33
Q ss_pred ccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCC
Q 013717 285 KRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSAD 362 (437)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~d 362 (437)
..++....+..++...+++.|+|.++.|++|+.-..|.||-++....-.+..+.-..+...|++++|+++ +|++|+.|
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D 167 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTD 167 (361)
T ss_pred CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccC
Confidence 4556666667789999999999999999999999999999998766555555555667889999999987 99999999
Q ss_pred CcEEEeeCC-----CCC---------Ce-eeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 363 RTVRIWQRG-----SDG---------RF-GCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 363 g~i~iwd~~-----~~~---------~~-~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
+..|||..- ... ++ .++.++....+.|..+.|+|.++ .|+-.+.|..+.+=|-..+.
T Consensus 168 ~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-----~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 168 GKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-----RLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-----EeeEecCCCceEEeecCCCc
Confidence 999999642 111 01 12333445677899999999986 69999999999999887764
No 207
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.70 E-value=3.8e-15 Score=141.70 Aligned_cols=265 Identities=14% Similarity=0.214 Sum_probs=166.4
Q ss_pred EeCCCCceeeeeccccCCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCee
Q 013717 122 YDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYV 198 (437)
Q Consensus 122 wd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (437)
|+.++ ..+..+ ..|...|..++.+++. +++|+.||+|++|+...-......
T Consensus 1034 W~p~G---~lVAhL---~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s-------------------- 1087 (1431)
T KOG1240|consen 1034 WNPRG---ILVAHL---HEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGS-------------------- 1087 (1431)
T ss_pred CCccc---eEeehh---hhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcce--------------------
Confidence 55544 445555 5689999999998433 999999999999998754311100
Q ss_pred EEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCc--ce-----EEEee-cccccEEEE-EEecC--Ce
Q 013717 199 TVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDL--RC-----LESIK-AHEDAVNAV-AVSAG--GT 265 (437)
Q Consensus 199 ~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~--~~-----~~~~~-~~~~~v~~~-~~~~~--~~ 265 (437)
......+......+.++...+ +.+|.++.||.|++.++... +. ..... ...+.+.++ ++... ..
T Consensus 1088 ---~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~ 1164 (1431)
T KOG1240|consen 1088 ---ARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSH 1164 (1431)
T ss_pred ---eeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccce
Confidence 001112222456677776655 89999999999999998762 11 11111 123334433 33322 22
Q ss_pred -EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeeccccc
Q 013717 266 -VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGK 344 (437)
Q Consensus 266 -l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 344 (437)
++.+...+.|..||++.....+... .....+.|++++.+|.+++++.|+..|.+.+||++-........ .++..
T Consensus 1165 ~lvy~T~~~~iv~~D~r~~~~~w~lk--~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~---~P~~~ 1239 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRMRHDAWRLK--NQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE---HPARA 1239 (1431)
T ss_pred eEEEEEeccceEEecchhhhhHHhhh--cCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc---CcccC
Confidence 8888899999999998655444332 23346789999999999999999999999999998654332222 22335
Q ss_pred ceEEEEee---C--CE-EEEEe-CCCcEEEeeCCCCCCeeeeeeecCC-----------------CCCeeEEEEEccCCC
Q 013717 345 AILCLINV---A--GL-LMSGS-ADRTVRIWQRGSDGRFGCLAVLEGH-----------------TKPVKSLTAVTEEGQ 400 (437)
Q Consensus 345 ~i~~~~~~---~--~~-l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~h-----------------~~~v~~l~~~~~~~~ 400 (437)
++..+..+ + .. +.+++ ..+.|.+|++.++.. ..++... ...+..+.......
T Consensus 1240 ~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~---~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~- 1315 (1431)
T KOG1240|consen 1240 PIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR---QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEK- 1315 (1431)
T ss_pred CcceEEeeccCCCCceEEEecccCCCceeeeecccCcc---eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccC-
Confidence 55444433 3 23 44444 578899999998762 2222111 11111121111111
Q ss_pred CceEEEEEecCCCcEEEEeeccCCCC
Q 013717 401 NGVVSVFSGSLDGEIRAWQVSVSCPN 426 (437)
Q Consensus 401 ~~~~~l~s~~~dg~i~iw~~~~~~~~ 426 (437)
+.++++|+.|+.||.||...++..
T Consensus 1316 --~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1316 --NGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred --CceeeecCCccceeeccCCCcccc
Confidence 138999999999999999877643
No 208
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2.5e-16 Score=135.47 Aligned_cols=279 Identities=13% Similarity=0.159 Sum_probs=205.6
Q ss_pred ceeeccccccccccCCCceeEEecCCCcceeeeec-CccCCeEEEEee----CCEEEEEecC-eEEEEeCCC-Cceeeee
Q 013717 61 SLQTLPSVPSLQKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH----HNFLYAASSH-EINVYDRTG-TTWTSIN 133 (437)
Q Consensus 61 ~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~----~~~l~s~~~d-~v~vwd~~~-~~~~~~~ 133 (437)
.+.|......+++.|.|..+.+|+........... ||...|..-.|- .+.+++.+.| .|++=.+.. +..+...
T Consensus 147 tV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~ 226 (559)
T KOG1334|consen 147 TVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTK 226 (559)
T ss_pred eeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecce
Confidence 55666677889999999999999998877766666 999999988875 6789999999 999877654 2222233
Q ss_pred ccccCCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeec
Q 013717 134 TFNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIE 210 (437)
Q Consensus 134 ~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (437)
.+ ..|.++|..++.-|+. |.+++.|+.+.-.|++.......+... ..
T Consensus 227 rl---~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr---------------------------~~ 276 (559)
T KOG1334|consen 227 RL---APHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCR---------------------------EA 276 (559)
T ss_pred ec---ccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeee---------------------------cc
Confidence 33 5799999999987654 999999999999998876432222211 01
Q ss_pred CCC---cEEEEEeCC---CeEEEEECCCcEEEEECCCcceE------EEee------cccccEEEEEEecCCe-EEEEeC
Q 013717 211 HGD---AVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCL------ESIK------AHEDAVNAVAVSAGGT-VYTGSA 271 (437)
Q Consensus 211 ~~~---~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~------~~~~------~~~~~v~~~~~~~~~~-l~~~~~ 271 (437)
+.. ....++.+| .++++|+.|-.+++||.+..... ..+. ...-.|++++|+.++. +++...
T Consensus 277 ~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn 356 (559)
T KOG1334|consen 277 DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN 356 (559)
T ss_pred CCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec
Confidence 222 567888888 79999999999999998653221 2221 2345699999998777 999999
Q ss_pred CCeEEEecCCCCcc--------cceeeEE-eeCccc--cEEEEEE-ccCCCEEEEEeCCCcEEEEECCCCccceEEeeee
Q 013717 272 DRKIRVWAKPFNEK--------RHALIAT-LEKHKS--AVNALAL-SDDGTVLFSGACDRSILVWDREDSANHMVVTGAL 339 (437)
Q Consensus 272 dg~v~iwd~~~~~~--------~~~~~~~-~~~~~~--~i~~~~~-~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 339 (437)
|-.|.+|.-..+.. ....+.. +++|.. .|..+-| -|...|+++|+.-|.|.||+-.+++. +..+
T Consensus 357 De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~ei----i~~M 432 (559)
T KOG1334|consen 357 DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEI----IRFM 432 (559)
T ss_pred ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHH----HHHh
Confidence 99999995432221 0122333 667654 4666665 57788999999999999999988763 3334
Q ss_pred cccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCC
Q 013717 340 RGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSD 373 (437)
Q Consensus 340 ~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~ 373 (437)
.+....|.|+.+++- +||+++-|.-|+||--.+.
T Consensus 433 egDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 433 EGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred hcccceEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 555568899999987 9999999999999986443
No 209
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=2.1e-14 Score=126.24 Aligned_cols=286 Identities=17% Similarity=0.217 Sum_probs=199.6
Q ss_pred eeeeecCccCCeEEEEee--CCEEEEEe-cC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCe
Q 013717 90 INSVQLGHKLPIGCIAVH--HNFLYAAS-SH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCK 163 (437)
Q Consensus 90 ~~~~~~~h~~~V~~l~~~--~~~l~s~~-~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~ 163 (437)
.+++-|+|...-+.|..+ |+|+.+.+ .. .|++||+..-.++..+.+ ....|.-...+++. ++.-..|.+
T Consensus 43 eLiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl-----Dae~V~feiLsDD~SK~v~L~~DR~ 117 (703)
T KOG2321|consen 43 ELIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL-----DAEVVDFEILSDDYSKSVFLQNDRT 117 (703)
T ss_pred HHHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc-----cccceeEEEeccchhhheEeecCce
Confidence 345556888888888888 88765555 55 999999998655555544 34566666666765 666667787
Q ss_pred EEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCC
Q 013717 164 IRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASD 241 (437)
Q Consensus 164 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~ 241 (437)
|.+-.-- |...... -...-.+++++. .-|+.++....|+-++++.
T Consensus 118 IefHak~-G~hy~~R--------------------------------IP~~GRDm~y~~~scDly~~gsg~evYRlNLEq 164 (703)
T KOG2321|consen 118 IEFHAKY-GRHYRTR--------------------------------IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQ 164 (703)
T ss_pred eeehhhc-Ceeeeee--------------------------------cCcCCccccccCCCccEEEeecCcceEEEEccc
Confidence 7664322 1100000 111223455554 4556666677899999999
Q ss_pred cceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeE--EeeCcc-----ccEEEEEEccCCCEEE
Q 013717 242 LRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIA--TLEKHK-----SAVNALALSDDGTVLF 313 (437)
Q Consensus 242 ~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~~~-----~~i~~~~~~~~~~~l~ 313 (437)
|+.+..+....+.++++.+++-.. |++|+.+|.|..||.+.......+-. ....|. ..|+++.|+.+|-.++
T Consensus 165 GrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~a 244 (703)
T KOG2321|consen 165 GRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVA 244 (703)
T ss_pred cccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEE
Confidence 999999988889999999998666 88889999999999875443222211 111222 2499999999999999
Q ss_pred EEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC---EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCee
Q 013717 314 SGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG---LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVK 390 (437)
Q Consensus 314 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~ 390 (437)
+|+.+|.|.|||+++.+..... -++...+|..+.|... --+.......++|||-.+++ ....+. ....++
T Consensus 245 VGts~G~v~iyDLRa~~pl~~k---dh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk---~~asiE-pt~~lN 317 (703)
T KOG2321|consen 245 VGTSTGSVLIYDLRASKPLLVK---DHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGK---PMASIE-PTSDLN 317 (703)
T ss_pred eeccCCcEEEEEcccCCceeec---ccCCccceeeecccccCCCceEEecchHHhhhcccccCC---ceeecc-ccCCcC
Confidence 9999999999999987654332 2344667778887533 33334455679999999988 444444 344599
Q ss_pred EEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 391 SLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 391 ~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
.+++.|+.+ +++++-.++.+..|=+..-.|
T Consensus 318 D~C~~p~sG-----m~f~Ane~~~m~~yyiP~LGP 347 (703)
T KOG2321|consen 318 DFCFVPGSG-----MFFTANESSKMHTYYIPSLGP 347 (703)
T ss_pred ceeeecCCc-----eEEEecCCCcceeEEccccCC
Confidence 999999886 799999998888887765544
No 210
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.4e-15 Score=128.70 Aligned_cols=197 Identities=21% Similarity=0.192 Sum_probs=143.8
Q ss_pred EEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEE
Q 013717 216 TGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIAT 292 (437)
Q Consensus 216 ~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~ 292 (437)
..+++++ ..+++|+.||++|||+......+.....|...|.++.|+|||+ |++-+.| ..+||+.+.+. .+..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~----~~a~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGA----ALAR 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCc----hhhh
Confidence 5666665 8999999999999999888888877888999999999999998 8999999 99999987652 2222
Q ss_pred e--eCccccEEEEEEccCC---C--EEEEEeCCCcEEEEECCCCccc--eEEeeeecccccceEEEE--eeCCEEEEEeC
Q 013717 293 L--EKHKSAVNALALSDDG---T--VLFSGACDRSILVWDREDSANH--MVVTGALRGHGKAILCLI--NVAGLLMSGSA 361 (437)
Q Consensus 293 ~--~~~~~~i~~~~~~~~~---~--~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~i~~~~--~~~~~l~~~~~ 361 (437)
. .........+.|+.|+ . .++....-+.|+.||+...... ......... ...|.+++ .+|++++.|+.
T Consensus 223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~-~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR-FKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc-cCcceeEEEcCCCcEEEEecc
Confidence 2 2233456677788776 3 3333334566777776533221 111111122 23455555 45679999999
Q ss_pred CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 362 DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 362 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
||.|-|++..+.+ ......+.|...|+.+.|+|+.. ++++.+.|..+.+..+.....
T Consensus 302 dGsVai~~~~~lq--~~~~vk~aH~~~VT~ltF~Pdsr-----~~~svSs~~~~~v~~l~vd~~ 358 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQ--RLQYVKEAHLGFVTGLTFSPDSR-----YLASVSSDNEAAVTKLAVDKT 358 (398)
T ss_pred CCcEEEEEeceee--eeEeehhhheeeeeeEEEcCCcC-----cccccccCCceeEEEEeeccc
Confidence 9999999999866 33445578999999999999884 799999999999999887443
No 211
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=2.1e-14 Score=132.56 Aligned_cols=229 Identities=14% Similarity=0.090 Sum_probs=152.2
Q ss_pred C-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecC---CeEEEEeCCCCcccccccccCccccceee
Q 013717 117 H-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQD---CKIRVWQLTPTKHHKLKTTLPTVNDRLLR 190 (437)
Q Consensus 117 d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 190 (437)
+ .|.+||.+....+ .+ ..|...+....|+|++ |+.++.+ ..|.+||+.+++.... ..
T Consensus 183 ~~~i~i~d~dg~~~~---~l---t~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l-~~---------- 245 (429)
T PRK01742 183 PYEVRVADYDGFNQF---IV---NRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV-AS---------- 245 (429)
T ss_pred eEEEEEECCCCCCce---Ee---ccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE-ec----------
Confidence 5 8999999875322 22 3477789999999876 7666543 4799999987653221 11
Q ss_pred ecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEE-ECCCcEEEE--ECCCcceEEEeecccccEEEEEEecCCe
Q 013717 191 FMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSV-SWDKSLKIW--RASDLRCLESIKAHEDAVNAVAVSAGGT 265 (437)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~-~~dg~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~ 265 (437)
..+.....+|+| +.|+.+ ..+|.+.|| |+.+++. ..+..+...+....|+|||+
T Consensus 246 --------------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~ 304 (429)
T PRK01742 246 --------------------FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQ 304 (429)
T ss_pred --------------------CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCC
Confidence 111233578888 566665 468876555 6666553 44555667788999999998
Q ss_pred -EEEEe-CCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccc
Q 013717 266 -VYTGS-ADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHG 343 (437)
Q Consensus 266 -l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 343 (437)
|+..+ .+|...||+++....... .+ .+.. ....|+|||++|+..+.++ +.+||+.+++... +... +.
T Consensus 305 ~i~f~s~~~g~~~I~~~~~~~~~~~---~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~-lt~~---~~ 373 (429)
T PRK01742 305 SILFTSDRSGSPQVYRMSASGGGAS---LV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV-LSST---FL 373 (429)
T ss_pred EEEEEECCCCCceEEEEECCCCCeE---Ee-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE-ecCC---CC
Confidence 65544 578889998754332211 12 2332 4578999999998887765 6669998765322 1111 12
Q ss_pred cceEEEEeeCCEEEEEeCCCcEEEeeCC--CCCCeeeeeeecCCCCCeeEEEEEcc
Q 013717 344 KAILCLINVAGLLMSGSADRTVRIWQRG--SDGRFGCLAVLEGHTKPVKSLTAVTE 397 (437)
Q Consensus 344 ~~i~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~h~~~v~~l~~~~~ 397 (437)
..-..+++++.+|+.++.++.+.+|++. .+. ....+.+|.+.+...+|+|.
T Consensus 374 ~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~---~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 374 DESPSISPNGIMIIYSSTQGLGKVLQLVSADGR---FKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCceECCCCCEEEEEEcCCCceEEEEEECCCC---ceEEccCCCCCCCCcccCCC
Confidence 2234566677799999999988888763 233 67778888888999999985
No 212
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.65 E-value=1.3e-12 Score=107.08 Aligned_cols=234 Identities=12% Similarity=0.190 Sum_probs=156.4
Q ss_pred eEEEEee--CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeE-EEEecC------CeEEEEeCCC
Q 013717 101 IGCIAVH--HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKI-FTAHQD------CKIRVWQLTP 171 (437)
Q Consensus 101 V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l-~s~~~d------g~i~iwd~~~ 171 (437)
..+++|+ ...++.|.++-.+||+.+- .+....... ..-.-.+..+-|-.+.+ +.||.+ ..+.|||=..
T Consensus 8 ~lsvs~NQD~ScFava~~~Gfriyn~~P--~ke~~~r~~-~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k 84 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTGFRIYNCDP--FKESASRQF-IDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK 84 (346)
T ss_pred eeEEEEccCCceEEEEecCceEEEecCc--hhhhhhhcc-ccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc
Confidence 4457888 4556666655999999886 222111110 11113344444555652 333322 5799999333
Q ss_pred CcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECC-CcceEEEeec
Q 013717 172 TKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRAS-DLRCLESIKA 250 (437)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~ 250 (437)
.+....+ ....+|.++.+.++.+++.- .+.|.||... +.+.++.+..
T Consensus 85 ~~~i~el-------------------------------~f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et 132 (346)
T KOG2111|consen 85 ERCIIEL-------------------------------SFNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIET 132 (346)
T ss_pred CcEEEEE-------------------------------EeccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeec
Confidence 3222222 36779999999998777765 4689999987 5566665542
Q ss_pred --ccccEEEEEEecCCe-EEE-EeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCc-EEEEE
Q 013717 251 --HEDAVNAVAVSAGGT-VYT-GSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRS-ILVWD 325 (437)
Q Consensus 251 --~~~~v~~~~~~~~~~-l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~i~d 325 (437)
....+.++.-..+.. ||. |-.-|.|+|-|+...... ....+.+|.+.|.+++.+-+|.++|+++..|+ |+|||
T Consensus 133 ~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFd 210 (346)
T KOG2111|consen 133 RSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN--APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFD 210 (346)
T ss_pred ccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcC--CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEE
Confidence 233344444333333 443 455799999998754422 23567789999999999999999999999997 68999
Q ss_pred CCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCC
Q 013717 326 REDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSD 373 (437)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~ 373 (437)
..+++...++.. ......|.+++|+++ +|+++++.|++.||.++..
T Consensus 211 t~~g~~l~E~RR--G~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 211 TEDGTLLQELRR--GVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred cCCCcEeeeeec--CCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 999986665543 234567889998877 9999999999999998763
No 213
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=3.2e-13 Score=112.38 Aligned_cols=292 Identities=14% Similarity=0.155 Sum_probs=179.4
Q ss_pred CCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCC
Q 013717 99 LPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPT 172 (437)
Q Consensus 99 ~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~ 172 (437)
-.+.-++|+ -..+|++..| .|++||-.......++. .....|+|++|-|.. |+.|+.. -|.+|.....
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks-----~sQrnvtclawRPlsaselavgCr~-gIciW~~s~t 172 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKS-----VSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSRT 172 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecc-----hhhcceeEEEeccCCcceeeeeecc-eeEEEEcCcc
Confidence 456677887 4556777777 99999988743333332 356789999998654 7777765 4899987643
Q ss_pred ccccccc-ccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE-CCCcEEEEECCCcceEEEe
Q 013717 173 KHHKLKT-TLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS-WDKSLKIWRASDLRCLESI 248 (437)
Q Consensus 173 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~~~~~~~ 248 (437)
....... ........ .....+| .+|+++.|++ ..+++++ .|..|.|||..++..+...
T Consensus 173 ln~~r~~~~~s~~~~q-----------------vl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~ 234 (445)
T KOG2139|consen 173 LNANRNIRMMSTHHLQ-----------------VLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLI 234 (445)
T ss_pred cccccccccccccchh-----------------heeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccc
Confidence 2221110 00000000 0011234 7899999998 6666665 4678999999999877666
Q ss_pred ecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECC
Q 013717 249 KAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327 (437)
Q Consensus 249 ~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (437)
....+.++-+.|+||+. |++++.|+..++|+... .+...+ ..-..+.|...+|+|+|++|+.+.. |.-++|.+.
T Consensus 235 ~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q---~wt~er-w~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~ 309 (445)
T KOG2139|consen 235 PKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQ---SWTKER-WILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLT 309 (445)
T ss_pred ccCCCceeeEEEcCCCCEEEEecccceeeeehhcc---cceecc-eeccCCceeeeeecCCCCEEEEEEc-CCceEEEEe
Confidence 55667899999999999 99999999999995432 112222 2224458999999999997665543 334455543
Q ss_pred CCccceEEe-----------eeec------c---cccceEEEEee--CCEEEEEeCCC--------cEEEeeCCCCCCee
Q 013717 328 DSANHMVVT-----------GALR------G---HGKAILCLINV--AGLLMSGSADR--------TVRIWQRGSDGRFG 377 (437)
Q Consensus 328 ~~~~~~~~~-----------~~~~------~---~~~~i~~~~~~--~~~l~~~~~dg--------~i~iwd~~~~~~~~ 377 (437)
-..+..... ..+. + -.+.+-+++|+ |++|++.-..+ .|.+||.+....++
T Consensus 310 f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ve 389 (445)
T KOG2139|consen 310 FDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVE 389 (445)
T ss_pred ecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceE
Confidence 221111111 1110 0 12344455554 66888776544 47778877644332
Q ss_pred ee--eeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717 378 CL--AVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 378 ~~--~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
.. ....+ ..-..|.|.|..+ .+.+|..+=.-|.+.-|++..-
T Consensus 390 ls~cg~i~g--e~P~~IsF~pl~n--~g~lLsiaWsTGriq~ypl~f~ 433 (445)
T KOG2139|consen 390 LSYCGMIGG--EYPAYISFGPLKN--EGRLLSIAWSTGRIQRYPLTFQ 433 (445)
T ss_pred EEecccccC--CCCceEEeeeccc--CCcEEEEEeccCceEeeeeEEE
Confidence 22 11122 2245667777553 2346766777788988887653
No 214
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=3.7e-14 Score=119.04 Aligned_cols=253 Identities=10% Similarity=0.097 Sum_probs=177.2
Q ss_pred CCcccEEEEEEeCCe----EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcE
Q 013717 140 SSSGSVKSVTFCDGK----IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAV 215 (437)
Q Consensus 140 ~h~~~v~~l~~~~~~----l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 215 (437)
.....|..++|..+. ++..+.|..+....+...........+ ........+|
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~------------------------~~~~l~~~~I 108 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDA------------------------KTVSLGTKSI 108 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccc------------------------cccccccccc
Confidence 345678888887332 444447777777776655433332111 1112356778
Q ss_pred EEEEeCCCeEEEEECCCcEEEEECCCcc----eEEEeecccccEEEEEEecCCe--EEEEeCC--CeEEEecCCCCcccc
Q 013717 216 TGLAVNNGLIYSVSWDKSLKIWRASDLR----CLESIKAHEDAVNAVAVSAGGT--VYTGSAD--RKIRVWAKPFNEKRH 287 (437)
Q Consensus 216 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~--l~~~~~d--g~v~iwd~~~~~~~~ 287 (437)
..++.....|++|-.+|.+.+|..+.+. .+..+. ....+..|.-++... +++|+.. ..+.+||+....+.+
T Consensus 109 ~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw 187 (412)
T KOG3881|consen 109 KGLKLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIW 187 (412)
T ss_pred cchhhcCCEEEEEecCCcEEEEeccCCccccccceeee-cCCceeeeccCCCCCceEecCchhcccceeeeecccceeee
Confidence 8888888999999999999999987442 233333 235577777666555 6779998 899999987653221
Q ss_pred eeeEEee---C--ccccEEEEEEccC--CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEe
Q 013717 288 ALIATLE---K--HKSAVNALALSDD--GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGS 360 (437)
Q Consensus 288 ~~~~~~~---~--~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~ 360 (437)
..-..-. + -.-.++++.|-+. ...|++++.-+.+++||.+.++++.. ...+..+.-..+.+.+++++|++|.
T Consensus 188 ~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~-~fd~~E~~is~~~l~p~gn~Iy~gn 266 (412)
T KOG3881|consen 188 SAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVA-QFDFLENPISSTGLTPSGNFIYTGN 266 (412)
T ss_pred eccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCccee-EeccccCcceeeeecCCCcEEEEec
Confidence 1100000 0 1234678999987 88999999999999999997655443 3334444444455667788999999
Q ss_pred CCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 361 ADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 361 ~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
.-|.+..||++.+. .....+.+-.+.|++|..+|..+ +++++|-|..|||+|+++.++
T Consensus 267 ~~g~l~~FD~r~~k--l~g~~~kg~tGsirsih~hp~~~-----~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 267 TKGQLAKFDLRGGK--LLGCGLKGITGSIRSIHCHPTHP-----VLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred ccchhheecccCce--eeccccCCccCCcceEEEcCCCc-----eEEeeccceeEEEeecccchh
Confidence 99999999999877 23344888999999999999874 899999999999999998554
No 215
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.64 E-value=3.7e-14 Score=117.12 Aligned_cols=318 Identities=14% Similarity=0.205 Sum_probs=207.2
Q ss_pred ceeeccccccccccCCCceeEEecCCCcceeeeecCc--cCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeecc
Q 013717 61 SLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGH--KLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTF 135 (437)
Q Consensus 61 ~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h--~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~ 135 (437)
.....|-.+.+.+++.|.++++|--....+.-..+.| ..+++++.+. ...|+.|-.+ ++.-+.+... .......
T Consensus 29 ~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sed-fnkm~~~ 107 (404)
T KOG1409|consen 29 AAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSED-FNKMTFL 107 (404)
T ss_pred hheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhh-hhhcchh
Confidence 4456788889999999999999987666665555534 5778888888 6777788777 8888877542 2233333
Q ss_pred ccCCCCcccEEEEEEe--CCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCC
Q 013717 136 NDNDSSSGSVKSVTFC--DGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGD 213 (437)
Q Consensus 136 ~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (437)
+.+..|...|..+.|+ +..+++.+.|..+.---.+.+........ ..
T Consensus 108 r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-------------------------------~~ 156 (404)
T KOG1409|consen 108 KDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-------------------------------ET 156 (404)
T ss_pred hhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-------------------------------ec
Confidence 3446799999999998 33488999988775444444432211110 00
Q ss_pred cEEEEEeCCCeEEEEECCCcEEEEEC--CCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceee
Q 013717 214 AVTGLAVNNGLIYSVSWDKSLKIWRA--SDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALI 290 (437)
Q Consensus 214 ~v~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~ 290 (437)
..+++.+.-.+...|...|.|.+..+ .....+.++.+|.+.+.+++|.+... +++|..|..+.+||+..+. ...
T Consensus 157 ~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~---g~~ 233 (404)
T KOG1409|consen 157 PASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK---GTA 233 (404)
T ss_pred cCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc---cee
Confidence 11111111124455556666655443 34567788889999999999999777 9999999999999986443 245
Q ss_pred EEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccce----------EEeee---------------eccc---
Q 013717 291 ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHM----------VVTGA---------------LRGH--- 342 (437)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----------~~~~~---------------~~~~--- 342 (437)
..+.+|...|..+...+--+.+++++.||.|.+|+++...... ...+. +..|
T Consensus 234 ~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~cr 313 (404)
T KOG1409|consen 234 YELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCR 313 (404)
T ss_pred eeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhh
Confidence 5677899999999988888899999999999999987421100 00000 0001
Q ss_pred -ccceEEEEeeCC--EEEEEeCCCcEEEe--------eCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecC
Q 013717 343 -GKAILCLINVAG--LLMSGSADRTVRIW--------QRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSL 411 (437)
Q Consensus 343 -~~~i~~~~~~~~--~l~~~~~dg~i~iw--------d~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~ 411 (437)
-+...+..-..+ ...+-+..-.+|+- |... .+++.+..-...|+.|.+....+ +|+|+|.
T Consensus 314 kcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~----t~LA~phei~tgItamhlqetlg-----lLvTsG~ 384 (404)
T KOG1409|consen 314 KCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEER----TPLAIPHEIKTGITAMHLQETLG-----LLVTSGT 384 (404)
T ss_pred hhhhhcCcccccCccccccccceeEEEEecccchhhhcCCC----CccccccccccceeEEEhhhhcc-----ceeecCC
Confidence 111111111111 22222222234443 3332 24555555556899998887765 7999999
Q ss_pred CCcEEEEeecc
Q 013717 412 DGEIRAWQVSV 422 (437)
Q Consensus 412 dg~i~iw~~~~ 422 (437)
|..|+|||++.
T Consensus 385 ~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 385 DRVIKIWDVRS 395 (404)
T ss_pred ceEEEEEechh
Confidence 99999999975
No 216
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=5.1e-15 Score=129.39 Aligned_cols=215 Identities=19% Similarity=0.219 Sum_probs=156.1
Q ss_pred eeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee-cccccEEEEEEecCC--e-EEEEeCCCeEEEec
Q 013717 206 KLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK-AHEDAVNAVAVSAGG--T-VYTGSADRKIRVWA 279 (437)
Q Consensus 206 ~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~--~-l~~~~~dg~v~iwd 279 (437)
..+.||.+-|+++.|+. .+|++|+.|-.+.|||.-..+.+..+. +|...|.++.|-|.. + +++|..|..|++||
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfd 123 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFD 123 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence 44578999999999987 899999999999999999888888875 899999999999843 3 89999999999999
Q ss_pred CCCCcc------cceeeEEeeCccccEEEEEEccCC-CEEEEEeCCCcEEEEECCCCccceEE------eeeecccccce
Q 013717 280 KPFNEK------RHALIATLEKHKSAVNALALSDDG-TVLFSGACDRSILVWDREDSANHMVV------TGALRGHGKAI 346 (437)
Q Consensus 280 ~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~------~~~~~~~~~~i 346 (437)
+..... .......+..|...|..++..|++ +.+.++++||+|+-||++.......- ...+...-...
T Consensus 124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel 203 (758)
T KOG1310|consen 124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL 203 (758)
T ss_pred cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence 974221 123344566788899999999988 78999999999999999864321110 00111122233
Q ss_pred EEEEeeC---CEEEEEeCCCcEEEeeCCCCCC---------------eeeeeee-cCCC-----------CCeeEEEEEc
Q 013717 347 LCLINVA---GLLMSGSADRTVRIWQRGSDGR---------------FGCLAVL-EGHT-----------KPVKSLTAVT 396 (437)
Q Consensus 347 ~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~---------------~~~~~~~-~~h~-----------~~v~~l~~~~ 396 (437)
.|+..++ .+|++|+.|-..++||.+...+ -.++..+ .+|- ..++-++|+|
T Consensus 204 k~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnp 283 (758)
T KOG1310|consen 204 KCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNP 283 (758)
T ss_pred eeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECC
Confidence 5555554 3999999999999999432110 0112222 1222 1256778889
Q ss_pred cCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 397 EEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 397 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
++.. +|++-+.+ .|+++|+..+++
T Consensus 284 NGtE----lLvs~~gE-hVYlfdvn~~~~ 307 (758)
T KOG1310|consen 284 NGTE----LLVSWGGE-HVYLFDVNEDKS 307 (758)
T ss_pred CCcE----EEEeeCCe-EEEEEeecCCCC
Confidence 8764 78877765 799999988764
No 217
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.61 E-value=1.5e-13 Score=113.62 Aligned_cols=278 Identities=13% Similarity=0.171 Sum_probs=171.0
Q ss_pred CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCC---ceeeeeccccC---------CCCcccEEEEEEeCCe----EE
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGT---TWTSINTFNDN---------DSSSGSVKSVTFCDGK----IF 156 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~---~~~~~~~~~~~---------~~h~~~v~~l~~~~~~----l~ 156 (437)
...+-|.++.|+ |++||+|..+ .|.++.-... +......+... ..-...|..+.|.+.. ++
T Consensus 23 teadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred chhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 445778999998 9999999999 9999876542 11222222111 1124568889998443 88
Q ss_pred EEecCCeEEEEeCCCCcccccccccCccc-----cceeee-cCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEE
Q 013717 157 TAHQDCKIRVWQLTPTKHHKLKTTLPTVN-----DRLLRF-MLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVS 229 (437)
Q Consensus 157 s~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~ 229 (437)
..+.|.+|++|.+........-..++... ..+... ..+.............-..|...|+++.++. ...+..+
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA 182 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA 182 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence 88899999999987654333111111110 000011 1111111222222223357899999999988 4455556
Q ss_pred CCCcEEEEECCCcceEEE---ee-----cccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEE-------
Q 013717 230 WDKSLKIWRASDLRCLES---IK-----AHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIAT------- 292 (437)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~---~~-----~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~------- 292 (437)
.|-.|.+|+++--..... ++ ....-|++..|+|... ++..+..|+|++-|++...........
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 788999999864332222 22 2235688999999665 888889999999999843211111111
Q ss_pred -----eeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecc---------cccce---EEEEeeCC-
Q 013717 293 -----LEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRG---------HGKAI---LCLINVAG- 354 (437)
Q Consensus 293 -----~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~---------~~~~i---~~~~~~~~- 354 (437)
+..--..|..+.|+++|+|+++-+. -+|++||+.....+......... ....| ..++|+|+
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 1122356889999999999998643 58999999655444333221111 01122 44567776
Q ss_pred -EEEEEeCCCcEEEeeCCCCC
Q 013717 355 -LLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 355 -~l~~~~~dg~i~iwd~~~~~ 374 (437)
++++|+....+++|++..+.
T Consensus 342 ~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 342 SYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred ceEecccccceEEEecCCCCc
Confidence 99999999999999965544
No 218
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.61 E-value=8.5e-14 Score=130.77 Aligned_cols=189 Identities=21% Similarity=0.270 Sum_probs=149.2
Q ss_pred eCCCeEEEEECCCcEEEEECCCcceEEEeeccccc-EEE---EEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEee
Q 013717 220 VNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDA-VNA---VAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLE 294 (437)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~---~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 294 (437)
+....++.+..++.+-+||...+.....+...... ..+ +-++++.- +++|+.-+.|.+|+...+. ... .+.
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn---~p~-~l~ 172 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN---KPI-RLK 172 (967)
T ss_pred hhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC---Ccc-eec
Confidence 33488899999999999999888776666522221 111 12234444 8999999999999886333 222 678
Q ss_pred CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCC
Q 013717 295 KHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 374 (437)
+|.+.|.++.++.||+++++.+.|.++++|++++.+... ...-+|...+..+.+.++.+++++.|.+.++|+...
T Consensus 173 GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~---~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~~-- 247 (967)
T KOG0974|consen 173 GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG---CTGFGHSARVWACCFLPNRIITVGEDCTCRVWGVNG-- 247 (967)
T ss_pred ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---cccccccceeEEEEeccceeEEeccceEEEEEeccc--
Confidence 999999999999999999999999999999999876443 345689999999999999999999999999997764
Q ss_pred CeeeeeeecCCCC-CeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 375 RFGCLAVLEGHTK-PVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 375 ~~~~~~~~~~h~~-~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
..+..+.+|.. .|..++..++.. .++|++.||.+++|++..-.
T Consensus 248 --~~l~~y~~h~g~~iw~~~~~~~~~-----~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 248 --TQLEVYDEHSGKGIWKIAVPIGVI-----IKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred --ceehhhhhhhhcceeEEEEcCCce-----EEEeeccCcchhhhhhhccc
Confidence 24557777865 689998888774 79999999999999976543
No 219
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=1.4e-12 Score=106.89 Aligned_cols=175 Identities=12% Similarity=0.186 Sum_probs=133.0
Q ss_pred ceeEEecCCCcceeeeecCccCCeEEEEeeCCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--E
Q 013717 78 ETINFSSASHLCINSVQLGHKLPIGCIAVHHNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--I 155 (437)
Q Consensus 78 g~i~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l 155 (437)
..+.+|| +....++..+....+|.++.+..+.+++.-.+.|.||...+. .+.+..+.... ....+.+++-..+. |
T Consensus 75 NkviIWD-D~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n-~k~l~~~et~~-NPkGlC~~~~~~~k~~L 151 (346)
T KOG2111|consen 75 NKVIIWD-DLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDN-PKLLHVIETRS-NPKGLCSLCPTSNKSLL 151 (346)
T ss_pred ceEEEEe-cccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCC-hhheeeeeccc-CCCceEeecCCCCceEE
Confidence 4688999 555777788899999999999999999999999999999853 33333332211 22334444444333 3
Q ss_pred E-EEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCC
Q 013717 156 F-TAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDK 232 (437)
Q Consensus 156 ~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg 232 (437)
+ -|-.-|.|+|-|+...+.. ...+...|...|.|++.+. ..+|+++..|
T Consensus 152 afPg~k~GqvQi~dL~~~~~~----------------------------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkG 203 (346)
T KOG2111|consen 152 AFPGFKTGQVQIVDLASTKPN----------------------------APSIINAHDSDIACVALNLQGTLVATASTKG 203 (346)
T ss_pred EcCCCccceEEEEEhhhcCcC----------------------------CceEEEcccCceeEEEEcCCccEEEEeccCc
Confidence 3 2345689999998765431 0123356999999999987 8999999999
Q ss_pred c-EEEEECCCcceEEEee--cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCC
Q 013717 233 S-LKIWRASDLRCLESIK--AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFN 283 (437)
Q Consensus 233 ~-i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~ 283 (437)
+ |||||..+|+.+++++ .....|.+|+|+|+.. |++++..|+|+||.++..
T Consensus 204 TLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 204 TLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 8 7999999999999997 3456799999999999 999999999999988753
No 220
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=1.5e-12 Score=108.44 Aligned_cols=277 Identities=15% Similarity=0.209 Sum_probs=181.4
Q ss_pred ceeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee---CCEEEEEecCeEEEEeCCCCceeee-----
Q 013717 61 SLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH---HNFLYAASSHEINVYDRTGTTWTSI----- 132 (437)
Q Consensus 61 ~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~---~~~l~s~~~d~v~vwd~~~~~~~~~----- 132 (437)
.+.-++....++.+..|-.|++++......++..-.-...|+|++|- +.-|+.|...-|.+|..........
T Consensus 103 ~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~ 182 (445)
T KOG2139|consen 103 GVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMM 182 (445)
T ss_pred eEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccccccccc
Confidence 45667777888889999999999987744333333667899999997 7889999988999998765211111
Q ss_pred ----eccccCCCCcccEEEEEEeCCe--EEEEec-CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccc
Q 013717 133 ----NTFNDNDSSSGSVKSVTFCDGK--IFTAHQ-DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKK 205 (437)
Q Consensus 133 ----~~~~~~~~h~~~v~~l~~~~~~--l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (437)
..+....+| ..|++|.|.+++ +++++. |..|.|||.+++.......
T Consensus 183 s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~-------------------------- 235 (445)
T KOG2139|consen 183 STHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP-------------------------- 235 (445)
T ss_pred cccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc--------------------------
Confidence 011111344 789999999776 777764 6789999999987655542
Q ss_pred eeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCC
Q 013717 206 KLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKP 281 (437)
Q Consensus 206 ~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~ 281 (437)
...+.+.-+.|+| .+|+++.-|+..++|+.....-........+.|..-.|+|+|. |++.+. .-++|.+.
T Consensus 236 ----~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg--sp~lysl~ 309 (445)
T KOG2139|consen 236 ----KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG--SPRLYSLT 309 (445)
T ss_pred ----cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC--CceEEEEe
Confidence 1446788899999 8999999999999996544333333333456899999999998 444443 34445443
Q ss_pred CCcccc-----------eeeEEee---------CccccEEEEEEccCCCEEEEEeCCC--------cEEEEECCCCccce
Q 013717 282 FNEKRH-----------ALIATLE---------KHKSAVNALALSDDGTVLFSGACDR--------SILVWDREDSANHM 333 (437)
Q Consensus 282 ~~~~~~-----------~~~~~~~---------~~~~~i~~~~~~~~~~~l~~~~~dg--------~i~i~d~~~~~~~~ 333 (437)
...+.. .++..+. ...+.+.+++|.|.|.+|++.-..+ .|.+||.+... ..
T Consensus 310 f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp-~v 388 (445)
T KOG2139|consen 310 FDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSP-PV 388 (445)
T ss_pred ecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccC-ce
Confidence 222111 1111111 1246788999999999999876543 36677776432 11
Q ss_pred EEe--eeecccccceEEEEeeCC---EEEEEeCCCcEEEeeCC
Q 013717 334 VVT--GALRGHGKAILCLINVAG---LLMSGSADRTVRIWQRG 371 (437)
Q Consensus 334 ~~~--~~~~~~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~~ 371 (437)
.+. ....+......++.+..+ +|..+=..|.+.-|++.
T Consensus 389 els~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 389 ELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 121 222333333445544422 66677777878777665
No 221
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=2.7e-14 Score=121.13 Aligned_cols=192 Identities=19% Similarity=0.256 Sum_probs=142.0
Q ss_pred EEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-
Q 013717 146 KSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN- 222 (437)
Q Consensus 146 ~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 222 (437)
..++|+.++ +++++.||++|+|+..+....... ..|...|.++.|+|
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e------------------------------~~~~~eV~DL~FS~d 197 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEE------------------------------IAHHAEVKDLDFSPD 197 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhh------------------------------HhhcCccccceeCCC
Confidence 677888553 999999999999997665433322 24899999999999
Q ss_pred -CeEEEEECCCcEEEEECCCcceEEEee--cccccEEEEEEecCC-----eE-EEEeCCCeEEEecCCCCccccee--eE
Q 013717 223 -GLIYSVSWDKSLKIWRASDLRCLESIK--AHEDAVNAVAVSAGG-----TV-YTGSADRKIRVWAKPFNEKRHAL--IA 291 (437)
Q Consensus 223 -~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~-----~l-~~~~~dg~v~iwd~~~~~~~~~~--~~ 291 (437)
++|++.+.| ..+||+++++..+.... ..+.....+.|+.|+ ++ +.....+.|+.||+..-... .. .+
T Consensus 198 gk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~ 275 (398)
T KOG0771|consen 198 GKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLR 275 (398)
T ss_pred CcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchh
Confidence 799999999 99999999997766654 233456677787776 33 33344567777765432211 11 11
Q ss_pred EeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEee
Q 013717 292 TLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQ 369 (437)
Q Consensus 292 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd 369 (437)
+.......|.+++.++||++++.|+.||.|-|++..+.+. .....+.|...|+.+.|.|+ ++++.+.|.++.|..
T Consensus 276 ~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~---~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~ 352 (398)
T KOG0771|consen 276 KKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR---LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTK 352 (398)
T ss_pred hhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeee---eEeehhhheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence 1222345799999999999999999999999999976543 33345679999999999887 888888898888887
Q ss_pred CCC
Q 013717 370 RGS 372 (437)
Q Consensus 370 ~~~ 372 (437)
+.-
T Consensus 353 l~v 355 (398)
T KOG0771|consen 353 LAV 355 (398)
T ss_pred Eee
Confidence 764
No 222
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=9.5e-13 Score=121.64 Aligned_cols=193 Identities=14% Similarity=0.051 Sum_probs=125.0
Q ss_pred cCCCcEEEEEeCC--CeEEEEECC---CcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEE-eCCCeEEEecCCC
Q 013717 210 EHGDAVTGLAVNN--GLIYSVSWD---KSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTG-SADRKIRVWAKPF 282 (437)
Q Consensus 210 ~~~~~v~~~~~~~--~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~-~~dg~v~iwd~~~ 282 (437)
.|...+....|+| +.|+.++.+ ..|++||+.+++... +....+....++|+|||+ |+.+ ..+|.+.||.++.
T Consensus 201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~ 279 (429)
T PRK01742 201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGA 279 (429)
T ss_pred cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCEEEEEEecCCcEEEEEEEC
Confidence 4677889999999 677776643 469999998875432 222233445789999998 6665 4688776664432
Q ss_pred CcccceeeEEeeCccccEEEEEEccCCCEEEEEe-CCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeC
Q 013717 283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGA-CDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSA 361 (437)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~ 361 (437)
... ....+..+...+....|+|||+.|+..+ .+|...||++.......... .+......+++++++|+..+.
T Consensus 280 ~~~---~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l----~~~~~~~~~SpDG~~ia~~~~ 352 (429)
T PRK01742 280 NGG---TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV----GGRGYSAQISADGKTLVMING 352 (429)
T ss_pred CCC---CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe----cCCCCCccCCCCCCEEEEEcC
Confidence 221 1334455666788999999999777554 57888888875432222222 122222345556678877777
Q ss_pred CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717 362 DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 362 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
++ +.+||+.+++. ......+ ....+.|+|++. +|+.++.+|.+.+|++.
T Consensus 353 ~~-i~~~Dl~~g~~---~~lt~~~--~~~~~~~sPdG~-----~i~~~s~~g~~~~l~~~ 401 (429)
T PRK01742 353 DN-VVKQDLTSGST---EVLSSTF--LDESPSISPNGI-----MIIYSSTQGLGKVLQLV 401 (429)
T ss_pred CC-EEEEECCCCCe---EEecCCC--CCCCceECCCCC-----EEEEEEcCCCceEEEEE
Confidence 65 66699987652 1111222 235678999985 78888889999888864
No 223
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.59 E-value=3.3e-15 Score=127.91 Aligned_cols=224 Identities=12% Similarity=0.190 Sum_probs=176.0
Q ss_pred cEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717 144 SVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN 221 (437)
Q Consensus 144 ~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 221 (437)
....+.++.++ ++.|+..|.|..+|..+++....+. -...|.++.|-
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-------------------------------v~Etv~Dv~~L 179 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-------------------------------VMETVRDVTFL 179 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeee-------------------------------hhhhhhhhhhh
Confidence 44567777444 9999999999999999987665554 34467778775
Q ss_pred C-CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCcccc
Q 013717 222 N-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSA 299 (437)
Q Consensus 222 ~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 299 (437)
. ..+++......++|||- .|..++.++.+ ..|..+.|.|.-. |++++..|.++.-|+..+. .+..+....+.
T Consensus 180 Hneq~~AVAQK~y~yvYD~-~GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk----lVa~~~t~~G~ 253 (545)
T KOG1272|consen 180 HNEQFFAVAQKKYVYVYDN-NGTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGK----LVASIRTGAGR 253 (545)
T ss_pred cchHHHHhhhhceEEEecC-CCcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhh----hhHHHHccCCc
Confidence 5 55556677889999994 67778888744 4599999999888 8899999999999887664 66667767788
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC--CEEEEEeCCCcEEEeeCCCCCCee
Q 013717 300 VNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA--GLLMSGSADRTVRIWQRGSDGRFG 377 (437)
Q Consensus 300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~ 377 (437)
+..+.-+|-+..+-+|..+|+|.+|.....+.. ..+..|.++|.++++++ .+++|.+.|..++|||++.-.
T Consensus 254 ~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL----vKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~--- 326 (545)
T KOG1272|consen 254 TDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL----VKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY--- 326 (545)
T ss_pred cchhhcCCccceEEEcCCCceEEecCCCCcchH----HHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc---
Confidence 999999998889999999999999999776533 33456899998888874 499999999999999999754
Q ss_pred eeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEe
Q 013717 378 CLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ 419 (437)
Q Consensus 378 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~ 419 (437)
.+.++.. ..+...++++..+ ++++|....|.||.
T Consensus 327 ql~t~~t-p~~a~~ls~Sqkg-------lLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 327 QLHTYRT-PHPASNLSLSQKG-------LLALSYGDHVQIWK 360 (545)
T ss_pred ccceeec-CCCcccccccccc-------ceeeecCCeeeeeh
Confidence 3333332 4567888899877 55566666899996
No 224
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.54 E-value=7e-14 Score=122.09 Aligned_cols=198 Identities=14% Similarity=0.185 Sum_probs=147.9
Q ss_pred CeEEEEECCCcEEEEECCCcceEEEee----cccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcc-----------
Q 013717 223 GLIYSVSWDKSLKIWRASDLRCLESIK----AHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEK----------- 285 (437)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~----------- 285 (437)
--++.|-..|.|.+.|....+....+. ..+..|+|+.|-|.+. ++++..+|.+.+||......
T Consensus 186 ~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~ 265 (636)
T KOG2394|consen 186 LDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKD 265 (636)
T ss_pred cceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCC
Confidence 456778888999999987633222121 2357899999998765 88888999999997642110
Q ss_pred -------------cceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee
Q 013717 286 -------------RHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV 352 (437)
Q Consensus 286 -------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 352 (437)
...++..+.-..+.|+..+|+|||++||+.+.||.++|||..+.+ +....+..-+..+|++|+
T Consensus 266 ~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e----Llg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 266 GDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE----LLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred CCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH----HHHHHHhhccceEEEEEc
Confidence 001222333345688999999999999999999999999998765 333334445667777776
Q ss_pred CC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEcc-------------------------------CC
Q 013717 353 AG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTE-------------------------------EG 399 (437)
Q Consensus 353 ~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~-------------------------------~~ 399 (437)
++ +|++|++|--|.||.+...+ .+..-++|+..|..++|.|- +.
T Consensus 342 PDGKyIvtGGEDDLVtVwSf~erR---VVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S 418 (636)
T KOG2394|consen 342 PDGKYIVTGGEDDLVTVWSFEERR---VVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGS 418 (636)
T ss_pred CCccEEEecCCcceEEEEEeccce---EEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCC
Confidence 55 99999999999999999765 88899999999999999831 00
Q ss_pred C-C-----------ceEEEEEecCCCcEEEEeeccCCCCC
Q 013717 400 Q-N-----------GVVSVFSGSLDGEIRAWQVSVSCPNS 427 (437)
Q Consensus 400 ~-~-----------~~~~l~s~~~dg~i~iw~~~~~~~~~ 427 (437)
. . ....+.+.|.|-.+.+||++......
T Consensus 419 ~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 419 AEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred cCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence 0 0 24678999999999999999887655
No 225
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.53 E-value=7.1e-12 Score=103.25 Aligned_cols=323 Identities=16% Similarity=0.161 Sum_probs=202.3
Q ss_pred eeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee--C-CEEEEEecC-eEEEEeCCCCceeeeecccc
Q 013717 62 LQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--H-NFLYAASSH-EINVYDRTGTTWTSINTFND 137 (437)
Q Consensus 62 ~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~-~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~ 137 (437)
-.|+|..+.+++.+.. .+.+-|... -+..+.+---+.|.-+.|. . ..|.....+ .|.+|++...++.+...
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~t-lq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId--- 88 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSET-LQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID--- 88 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccch-hhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec---
Confidence 4788999999988876 555544433 2223333345677788887 3 345555677 99999999876665543
Q ss_pred CCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccc---------
Q 013717 138 NDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKK--------- 205 (437)
Q Consensus 138 ~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 205 (437)
....++.+++|+|++ |.+...|-.|.+|.+.+.+...... +........+..+..+.++..+..
T Consensus 89 --eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~--pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~ 164 (447)
T KOG4497|consen 89 --EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH--PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS 164 (447)
T ss_pred --cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc--cccCceeEEECCCCceeeeeecccHHHHHHHHh
Confidence 467899999999876 7788899999999998875433221 222222333344444444322221
Q ss_pred -------eeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEE
Q 013717 206 -------KLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRV 277 (437)
Q Consensus 206 -------~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~i 277 (437)
+.+.-.+-..+++.|+| .+..+.+||..-.-.+..+. -.-.+..++|+|.++ +++|+.|+.+++
T Consensus 165 c~~W~ll~~f~~dT~DltgieWsP-------dg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrv 236 (447)
T KOG4497|consen 165 CKAWILLKEFKLDTIDLTGIEWSP-------DGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRV 236 (447)
T ss_pred hHHHHHHHhcCCCcccccCceECC-------CCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhh
Confidence 11122334556677766 23445677743222222222 234688999999888 999999999988
Q ss_pred ecCCCCc--------------------------------------------------------ccceeeEEee------C
Q 013717 278 WAKPFNE--------------------------------------------------------KRHALIATLE------K 295 (437)
Q Consensus 278 wd~~~~~--------------------------------------------------------~~~~~~~~~~------~ 295 (437)
.+--+-. .....+..++ .
T Consensus 237 lnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pn 316 (447)
T KOG4497|consen 237 LNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPN 316 (447)
T ss_pred hceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCC
Confidence 6321000 0000011111 1
Q ss_pred ccccEEEEEEccCCCEEEEEeC--CCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCC
Q 013717 296 HKSAVNALALSDDGTVLFSGAC--DRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRG 371 (437)
Q Consensus 296 ~~~~i~~~~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~ 371 (437)
....+--++|++|..++++-.. -+.+-+||++..+....+ ....+|.++.|++. .|+.+.....+++|...
T Consensus 317 Pk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL-----iQk~piraf~WdP~~prL~vctg~srLY~W~ps 391 (447)
T KOG4497|consen 317 PKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL-----IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPS 391 (447)
T ss_pred cccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh-----hhccceeEEEeCCCCceEEEEcCCceEEEEcCC
Confidence 2334677999999999888643 357899999765432222 23567888899876 67777777789999887
Q ss_pred CCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcE
Q 013717 372 SDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEI 415 (437)
Q Consensus 372 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i 415 (437)
... ++... +..-.|..+.|.-+++ +++-.+.|...
T Consensus 392 g~~---~V~vP-~~GF~i~~l~W~~~g~-----~i~l~~kDafc 426 (447)
T KOG4497|consen 392 GPR---VVGVP-KKGFNIQKLQWLQPGE-----FIVLCGKDAFC 426 (447)
T ss_pred Cce---EEecC-CCCceeeeEEecCCCc-----EEEEEcCCceE
Confidence 522 33332 2346899999998885 68888888643
No 226
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=7.9e-12 Score=115.27 Aligned_cols=228 Identities=11% Similarity=0.033 Sum_probs=145.6
Q ss_pred eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEe---cCCeEEEEeCCCCcccccccccCccccceeeec
Q 013717 118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAH---QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFM 192 (437)
Q Consensus 118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 192 (437)
.|.+||.+....+.+. .+...+...+|+|++ |+..+ .+..|.+|++.+++......
T Consensus 180 ~l~~~d~dg~~~~~lt------~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~------------- 240 (429)
T PRK03629 180 ELRVSDYDGYNQFVVH------RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS------------- 240 (429)
T ss_pred eEEEEcCCCCCCEEee------cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccC-------------
Confidence 7999998875433332 256789999999876 55443 34579999998765322211
Q ss_pred CCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEE-ECCC--cEEEEECCCcceEEEeecccccEEEEEEecCCe-E
Q 013717 193 LPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSV-SWDK--SLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-V 266 (437)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~-~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l 266 (437)
....+....|+| +.|+.. ..+| .|.+||+.+++.... ..+...+....|+|||+ |
T Consensus 241 ------------------~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I 301 (429)
T PRK03629 241 ------------------FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNL 301 (429)
T ss_pred ------------------CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEE
Confidence 122234577888 555544 4455 588999988765443 33445678899999998 7
Q ss_pred EEEeC-CCeEEEe--cCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC---CcEEEEECCCCccceEEeeeec
Q 013717 267 YTGSA-DRKIRVW--AKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD---RSILVWDREDSANHMVVTGALR 340 (437)
Q Consensus 267 ~~~~~-dg~v~iw--d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~ 340 (437)
+..+. ++...+| |+.... ...+...........|+|||++|+..+.+ ..|++||+.+++.. .+. .
T Consensus 302 ~f~s~~~g~~~Iy~~d~~~g~-----~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt---~ 372 (429)
T PRK03629 302 AYTSDQAGRPQVYKVNINGGA-----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLT---D 372 (429)
T ss_pred EEEeCCCCCceEEEEECCCCC-----eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeC---C
Confidence 66665 3455555 443321 22223334445678999999998876543 35888999876422 121 1
Q ss_pred ccccceEEEEeeCCEEEEEeCCCc---EEEeeCCCCCCeeeeeeecCCCCCeeEEEEEc
Q 013717 341 GHGKAILCLINVAGLLMSGSADRT---VRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT 396 (437)
Q Consensus 341 ~~~~~i~~~~~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~ 396 (437)
.....-..+++++..|+.++.++. +.++++... ....+.+|.+.+...+|+|
T Consensus 373 ~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~----~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 373 TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR----FKARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCC----CeEECccCCCCcCCcccCC
Confidence 122223456677778888887764 677777542 3566777888899999987
No 227
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.50 E-value=6.4e-11 Score=111.86 Aligned_cols=151 Identities=21% Similarity=0.213 Sum_probs=121.6
Q ss_pred eccccceeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeee
Q 013717 56 LQSNLSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSI 132 (437)
Q Consensus 56 ~~~~~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~ 132 (437)
+-+.....+.+..-.+++++--+.|.+|......+.....||.+.|.++.++ |+++++.|+| ++|+|++++.+....
T Consensus 133 l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~ 212 (967)
T KOG0974|consen 133 LYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGC 212 (967)
T ss_pred EEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCc
Confidence 3344456777788889999999999999998666666555999999999997 9999999999 999999999543332
Q ss_pred eccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC-
Q 013717 133 NTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH- 211 (437)
Q Consensus 133 ~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 211 (437)
.. -+|+..|..++|.++.+++++.|.+.++|+.+..+.. .+. +|
T Consensus 213 ~~----fgHsaRvw~~~~~~n~i~t~gedctcrvW~~~~~~l~-~y~------------------------------~h~ 257 (967)
T KOG0974|consen 213 TG----FGHSARVWACCFLPNRIITVGEDCTCRVWGVNGTQLE-VYD------------------------------EHS 257 (967)
T ss_pred cc----ccccceeEEEEeccceeEEeccceEEEEEecccceeh-hhh------------------------------hhh
Confidence 22 4799999999999999999999999999977654322 111 23
Q ss_pred CCcEEEEEeCC--CeEEEEECCCcEEEEECCC
Q 013717 212 GDAVTGLAVNN--GLIYSVSWDKSLKIWRASD 241 (437)
Q Consensus 212 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~ 241 (437)
...|..++..+ ..+++++.||.+++||+..
T Consensus 258 g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 258 GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred hcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 45688888877 7889999999999998754
No 228
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.48 E-value=3.6e-10 Score=103.31 Aligned_cols=298 Identities=13% Similarity=0.105 Sum_probs=177.1
Q ss_pred ccccccCCCceeEEecCCCcceeeeecCccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEE-
Q 013717 69 PSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVK- 146 (437)
Q Consensus 69 ~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~- 146 (437)
..+...+.+|.+..++.......-..--........+..++.++.++.+ .+..+|..+++..-...+ .+.+.
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~------~~~~~~ 139 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKL------SSEVLS 139 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeecc------Cceeec
Confidence 3455567778888888755433322221111122344557788888888 999999988643322222 12222
Q ss_pred EEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEE
Q 013717 147 SVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIY 226 (437)
Q Consensus 147 ~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 226 (437)
.....++.++.++.+|.|..||.++++........... ..+.....+ ....+.++
T Consensus 140 ~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~---------------------~~~~~~~sp----~~~~~~v~ 194 (377)
T TIGR03300 140 PPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPA---------------------LTLRGSASP----VIADGGVL 194 (377)
T ss_pred CCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCc---------------------eeecCCCCC----EEECCEEE
Confidence 22234566888888999999999988754433211000 000000111 12235677
Q ss_pred EEECCCcEEEEECCCcceEEEeecccc----c------EE-EEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeC
Q 013717 227 SVSWDKSLKIWRASDLRCLESIKAHED----A------VN-AVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEK 295 (437)
Q Consensus 227 ~~~~dg~i~iwd~~~~~~~~~~~~~~~----~------v~-~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 295 (437)
.+..+|.+..+|.++++.+........ . +. ...+ .++.+++++.+|.+..||..++...+ ...
T Consensus 195 ~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~g~l~a~d~~tG~~~W----~~~- 268 (377)
T TIGR03300 195 VGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQGRVAALDLRSGRVLW----KRD- 268 (377)
T ss_pred EECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEcCCEEEEEECCCCcEEE----eec-
Confidence 888889999999999987765431100 0 10 1111 24568888899999999987654322 222
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCC
Q 013717 296 HKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGR 375 (437)
Q Consensus 296 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 375 (437)
. ....... .++..+++++.||.++.+|..+++....... .. ..........++.|++++.+|.|+++|..+++
T Consensus 269 ~-~~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~-~~--~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~- 341 (377)
T TIGR03300 269 A-SSYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDE-LK--YRQLTAPAVVGGYLVVGDFEGYLHWLSREDGS- 341 (377)
T ss_pred c-CCccCce--EeCCEEEEECCCCeEEEEECCCCcEEEcccc-cc--CCccccCEEECCEEEEEeCCCEEEEEECCCCC-
Confidence 1 1111222 2466888888999999999988875443311 11 11222333457799999999999999998877
Q ss_pred eeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEE
Q 013717 376 FGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAW 418 (437)
Q Consensus 376 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw 418 (437)
.+..+..+...+..--...++ .|+.++.||.|+.+
T Consensus 342 --~~~~~~~~~~~~~~sp~~~~~------~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 342 --FVARLKTDGSGIASPPVVVGD------GLLVQTRDGDLYAF 376 (377)
T ss_pred --EEEEEEcCCCccccCCEEECC------EEEEEeCCceEEEe
Confidence 666666555443332223333 48888899999876
No 229
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=2.3e-11 Score=112.80 Aligned_cols=228 Identities=12% Similarity=0.072 Sum_probs=139.2
Q ss_pred eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEec---CCeEEEEeCCCCcccccccccCccccceeeec
Q 013717 118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQ---DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFM 192 (437)
Q Consensus 118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 192 (437)
.|.+||......+.+. .+...+.+..|+|++ |+..+. +..|.+||+.+++.....
T Consensus 185 ~l~i~D~~g~~~~~lt------~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~-------------- 244 (433)
T PRK04922 185 ALQVADSDGYNPQTIL------RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA-------------- 244 (433)
T ss_pred EEEEECCCCCCceEee------cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec--------------
Confidence 6999998764333322 366789999999775 666653 346999999876532211
Q ss_pred CCCCeeEEeeccceeeecCCCcEEEEEeCC--CeE-EEEECCC--cEEEEECCCcceEEEeecccccEEEEEEecCCe-E
Q 013717 193 LPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLI-YSVSWDK--SLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-V 266 (437)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l-~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l 266 (437)
...+...+..|+| +.+ ++.+.+| .|++||+.+++.. .+..+.......+|+|||+ +
T Consensus 245 -----------------~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l 306 (433)
T PRK04922 245 -----------------SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSI 306 (433)
T ss_pred -----------------cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEE
Confidence 1223344677887 445 4555555 5999999887653 4444555567889999998 6
Q ss_pred EEEeC-CCe--EEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC---cEEEEECCCCccceEEeeeec
Q 013717 267 YTGSA-DRK--IRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR---SILVWDREDSANHMVVTGALR 340 (437)
Q Consensus 267 ~~~~~-dg~--v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~ 340 (437)
+..+. +|. |.++|+..+. ...+..........+|+|||++|+..+.++ .|.+||+.+++.. .+. .
T Consensus 307 ~f~sd~~g~~~iy~~dl~~g~-----~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt---~ 377 (433)
T PRK04922 307 YFTSDRGGRPQIYRVAASGGS-----AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT---P 377 (433)
T ss_pred EEEECCCCCceEEEEECCCCC-----eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC---C
Confidence 66553 455 5555554322 112222233445789999999998765443 6999999776532 111 1
Q ss_pred ccccceEEEEeeCCEEEEEeCC---CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEc
Q 013717 341 GHGKAILCLINVAGLLMSGSAD---RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT 396 (437)
Q Consensus 341 ~~~~~i~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~ 396 (437)
+....-..++.++++|+..+.+ +.|.++++... ....+..+.+.+...+|+|
T Consensus 378 ~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~----~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 378 GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR----VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEEcccCCCCCCCCccCC
Confidence 1112223555666666655543 35777777542 3444555566777777876
No 230
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.47 E-value=2.5e-10 Score=102.26 Aligned_cols=269 Identities=13% Similarity=0.129 Sum_probs=160.2
Q ss_pred CCEEEEEe-cC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCc
Q 013717 108 HNFLYAAS-SH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPT 183 (437)
Q Consensus 108 ~~~l~s~~-~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 183 (437)
+++++..- .+ .|.|.|..+ .+.+..+. .....-..+.+++++ ++.++.||.|.++|+.+.+....+.
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t--~~~~~~i~---~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~---- 75 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGAT--NKVVARIP---TGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK---- 75 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT---SEEEEEE----STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----
T ss_pred ccEEEEEecCCCEEEEEECCC--CeEEEEEc---CCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe----
Confidence 45554444 44 999999998 44555552 122233446678754 7778899999999999988665544
Q ss_pred cccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE-CCCcEEEEECCCcceEEEeecc-------cc
Q 013717 184 VNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS-WDKSLKIWRASDLRCLESIKAH-------ED 253 (437)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-------~~ 253 (437)
-.....++++++ ++++++. .++.+.++|.++.+.++.+... ..
T Consensus 76 ---------------------------~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~ 128 (369)
T PF02239_consen 76 ---------------------------VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPES 128 (369)
T ss_dssp ----------------------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS--
T ss_pred ---------------------------cCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCC
Confidence 334567788877 7777664 6899999999999999887632 34
Q ss_pred cEEEEEEecCCe-EEEEeC-CCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEE-eCCCcEEEEECCCCc
Q 013717 254 AVNAVAVSAGGT-VYTGSA-DRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSG-ACDRSILVWDREDSA 330 (437)
Q Consensus 254 ~v~~~~~~~~~~-l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~ 330 (437)
.+.++..+|... ++..-. .+.|-+.|..... .................|+|++++++++ ..++.|-++|.++.+
T Consensus 129 Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~---~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k 205 (369)
T PF02239_consen 129 RVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK---NLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK 205 (369)
T ss_dssp -EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS---CEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred CceeEEecCCCCEEEEEEccCCeEEEEEecccc---ccceeeecccccccccccCcccceeeecccccceeEEEeeccce
Confidence 677888888777 655555 4888888765432 1222233345667889999999987664 557789999998765
Q ss_pred cceEEeeeecccccceEEE-----------EeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCC
Q 013717 331 NHMVVTGALRGHGKAILCL-----------INVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEG 399 (437)
Q Consensus 331 ~~~~~~~~~~~~~~~i~~~-----------~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 399 (437)
....+......|......+ ...+...++.-....+.+||....+ .++++....++ .-+..+|++.
T Consensus 206 ~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wk---vv~~I~~~G~g-lFi~thP~s~ 281 (369)
T PF02239_consen 206 LVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWK---VVKTIPTQGGG-LFIKTHPDSR 281 (369)
T ss_dssp EEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTS---EEEEEE-SSSS---EE--TT-S
T ss_pred EEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCe---EEEEEECCCCc-ceeecCCCCc
Confidence 4433222222333333322 2223333233333456677777644 78888877667 7788899986
Q ss_pred CCceEEEEEe----cCCCcEEEEeeccCC
Q 013717 400 QNGVVSVFSG----SLDGEIRAWQVSVSC 424 (437)
Q Consensus 400 ~~~~~~l~s~----~~dg~i~iw~~~~~~ 424 (437)
++... ...+.|.++|.++.+
T Consensus 282 -----~vwvd~~~~~~~~~v~viD~~tl~ 305 (369)
T PF02239_consen 282 -----YVWVDTFLNPDADTVQVIDKKTLK 305 (369)
T ss_dssp -----EEEEE-TT-SSHT-EEEEECCGTE
T ss_pred -----cEEeeccCCCCCceEEEEECcCcc
Confidence 56655 556899999998864
No 231
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.45 E-value=3.3e-11 Score=99.40 Aligned_cols=270 Identities=11% Similarity=0.119 Sum_probs=171.4
Q ss_pred eCCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCc
Q 013717 107 HHNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPT 183 (437)
Q Consensus 107 ~~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 183 (437)
+|+++|+++.-.+.|=|.++ .+....+ ..-..|.-|.|.-+. |.....|+.|.+|++...+-...+.
T Consensus 19 ~g~yiAs~~~yrlviRd~~t--lq~~qlf----~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckId---- 88 (447)
T KOG4497|consen 19 CGNYIASLSRYRLVIRDSET--LQLHQLF----LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKID---- 88 (447)
T ss_pred CCCeeeeeeeeEEEEeccch--hhHHHHH----HHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEec----
Confidence 39999999987888888887 3333322 134677888888554 6667789999999998776444433
Q ss_pred cccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEE
Q 013717 184 VNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAV 260 (437)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 260 (437)
.....+.+++|+| ..|.+...+-.|.+|.+.+.+.... +-.+..+..++|
T Consensus 89 --------------------------eg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f 141 (447)
T KOG4497|consen 89 --------------------------EGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAF 141 (447)
T ss_pred --------------------------cCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEE
Confidence 3556889999999 5666777899999999988665432 323455688899
Q ss_pred ecCCe-EEEEeC------------------------------------CCeEEEecCCCCcccceeeEEeeCccccEEEE
Q 013717 261 SAGGT-VYTGSA------------------------------------DRKIRVWAKPFNEKRHALIATLEKHKSAVNAL 303 (437)
Q Consensus 261 ~~~~~-l~~~~~------------------------------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~ 303 (437)
+|||+ .+..+. +..+.+||-- ...+.. .....-.+..+
T Consensus 142 ~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~---Leykv~--aYe~~lG~k~v 216 (447)
T KOG4497|consen 142 HPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNV---LEYKVY--AYERGLGLKFV 216 (447)
T ss_pred CCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecch---hhheee--eeeeccceeEE
Confidence 99998 333331 2334445321 111111 11233568899
Q ss_pred EEccCCCEEEEEeCCCcEEEEECCCCcc----------------------------------------------------
Q 013717 304 ALSDDGTVLFSGACDRSILVWDREDSAN---------------------------------------------------- 331 (437)
Q Consensus 304 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~---------------------------------------------------- 331 (437)
+|+|.+++|+.|+.|+.++|.+--+-+.
T Consensus 217 ~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~Y 296 (447)
T KOG4497|consen 217 EWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIY 296 (447)
T ss_pred EeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhh
Confidence 9999999999999999998865321000
Q ss_pred ----ceEEeee------ecccccceEEEEeeCC--EEEEEeC--CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEcc
Q 013717 332 ----HMVVTGA------LRGHGKAILCLINVAG--LLMSGSA--DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTE 397 (437)
Q Consensus 332 ----~~~~~~~------~~~~~~~i~~~~~~~~--~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 397 (437)
....... .......+--++|+.+ ++++-.+ -+.+-+||+...+ . ...-....+|....|.|.
T Consensus 297 E~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~---l-~avLiQk~piraf~WdP~ 372 (447)
T KOG4497|consen 297 EQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK---L-HAVLIQKHPIRAFEWDPG 372 (447)
T ss_pred hhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh---h-hhhhhhccceeEEEeCCC
Confidence 0000000 0111223344566655 5555443 2568999999754 3 333335678999999998
Q ss_pred CCCCceEEEEEecCCCcEEEEeeccCCCCC
Q 013717 398 EGQNGVVSVFSGSLDGEIRAWQVSVSCPNS 427 (437)
Q Consensus 398 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 427 (437)
.+. |+.+.....+++|.......+.
T Consensus 373 ~pr-----L~vctg~srLY~W~psg~~~V~ 397 (447)
T KOG4497|consen 373 RPR-----LVVCTGKSRLYFWAPSGPRVVG 397 (447)
T ss_pred Cce-----EEEEcCCceEEEEcCCCceEEe
Confidence 874 4444444579999887654333
No 232
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=2.2e-11 Score=107.62 Aligned_cols=249 Identities=13% Similarity=0.160 Sum_probs=167.3
Q ss_pred CCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717 140 SSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT 216 (437)
Q Consensus 140 ~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 216 (437)
.+...-+.|..++++ +++|...-.|++||+..-...... .-...+.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFER-------------------------------hlDae~V 97 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFER-------------------------------HLDAEVV 97 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeee-------------------------------cccccce
Confidence 577888999999776 888889999999999865321111 1122222
Q ss_pred E-EEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEE
Q 013717 217 G-LAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIAT 292 (437)
Q Consensus 217 ~-~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~ 292 (437)
. .-.+. ..++.-..|.+|.+...- |.. ..++ -...-..++++.-.. |++++....|.-+++..+ ..+..
T Consensus 98 ~feiLsDD~SK~v~L~~DR~IefHak~-G~h-y~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqG----rfL~P 170 (703)
T KOG2321|consen 98 DFEILSDDYSKSVFLQNDRTIEFHAKY-GRH-YRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG----RFLNP 170 (703)
T ss_pred eEEEeccchhhheEeecCceeeehhhc-Cee-eeee-cCcCCccccccCCCccEEEeecCcceEEEEcccc----ccccc
Confidence 2 22232 444445566666554321 211 1111 122345566664443 777777788888866544 46677
Q ss_pred eeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeee--ecccc-----cceEEEEeeCC--EEEEEeCCC
Q 013717 293 LEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGA--LRGHG-----KAILCLINVAG--LLMSGSADR 363 (437)
Q Consensus 293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~-----~~i~~~~~~~~--~l~~~~~dg 363 (437)
+....+.++++..++...+|++|+.+|.|-.||.++......+... ...|. ..|+++.|.++ .+++|+.+|
T Consensus 171 ~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G 250 (703)
T KOG2321|consen 171 FETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG 250 (703)
T ss_pred cccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC
Confidence 7767789999999999999999999999999999876544433221 12233 34899999875 899999999
Q ss_pred cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCCCCCeec
Q 013717 364 TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSSPLNL 432 (437)
Q Consensus 364 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 432 (437)
.+.|||++..+ ..+..-++..-+|..+.|.+.+.+ ..|+|.. ...++|||-.++++.......
T Consensus 251 ~v~iyDLRa~~--pl~~kdh~~e~pi~~l~~~~~~~q---~~v~S~D-k~~~kiWd~~~Gk~~asiEpt 313 (703)
T KOG2321|consen 251 SVLIYDLRASK--PLLVKDHGYELPIKKLDWQDTDQQ---NKVVSMD-KRILKIWDECTGKPMASIEPT 313 (703)
T ss_pred cEEEEEcccCC--ceeecccCCccceeeecccccCCC---ceEEecc-hHHhhhcccccCCceeecccc
Confidence 99999999877 233344455668999999887543 2566654 468999999999875544333
No 233
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.42 E-value=5.6e-11 Score=109.80 Aligned_cols=231 Identities=13% Similarity=0.077 Sum_probs=137.8
Q ss_pred eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecC---CeEEEEeCCCCcccccccccCccccceeeec
Q 013717 118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQD---CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFM 192 (437)
Q Consensus 118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 192 (437)
.|.++|......+.+ ..+...+.+.+|+|++ |+..+.+ ..|.+||+.+++.....
T Consensus 177 ~L~~~D~dG~~~~~l------~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~-------------- 236 (427)
T PRK02889 177 QLQISDADGQNAQSA------LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA-------------- 236 (427)
T ss_pred EEEEECCCCCCceEe------ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee--------------
Confidence 677888765322222 2366789999999776 6655532 45999999877532211
Q ss_pred CCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEE-EEECCCcEEEEE--CCCcceEEEeecccccEEEEEEecCCe-E
Q 013717 193 LPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIY-SVSWDKSLKIWR--ASDLRCLESIKAHEDAVNAVAVSAGGT-V 266 (437)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg~i~iwd--~~~~~~~~~~~~~~~~v~~~~~~~~~~-l 266 (437)
...+.+....|+| +.|+ +.+.+|...||. +..+. ...+..+........|+|||+ +
T Consensus 237 -----------------~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l 298 (427)
T PRK02889 237 -----------------NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSI 298 (427)
T ss_pred -----------------cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEE
Confidence 1223455778888 5555 567788766665 44443 444544555567788999998 6
Q ss_pred EEEeC-CCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC---cEEEEECCCCccceEEeeeeccc
Q 013717 267 YTGSA-DRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR---SILVWDREDSANHMVVTGALRGH 342 (437)
Q Consensus 267 ~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~ 342 (437)
+..+. +|...+|.+....... ..+...........|+|||++|+..+.++ .|.+||+.+++... +. ...
T Consensus 299 ~f~s~~~g~~~Iy~~~~~~g~~---~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt---~~~ 371 (427)
T PRK02889 299 YFTSDRGGAPQIYRMPASGGAA---QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-LT---DTT 371 (427)
T ss_pred EEEecCCCCcEEEEEECCCCce---EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-cc---CCC
Confidence 65553 5677777654222111 11111223344678999999998776654 69999998765322 11 111
Q ss_pred ccceEEEEeeCCEEEEEeCC-Cc--EEEeeCCCCCCeeeeeeecCCCCCeeEEEEEcc
Q 013717 343 GKAILCLINVAGLLMSGSAD-RT--VRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTE 397 (437)
Q Consensus 343 ~~~i~~~~~~~~~l~~~~~d-g~--i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 397 (437)
...-..+++++..|+.++.+ |. +.+.++. +. ....+..+.+.+...+|+|-
T Consensus 372 ~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~---~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 372 RDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GR---IKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred CccCceECCCCCEEEEEEecCCCEEEEEEECC-CC---ceEEeecCCCCCCCCccCCC
Confidence 22234556666666655543 33 5555553 22 34445556677777888873
No 234
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.42 E-value=5.3e-11 Score=98.78 Aligned_cols=242 Identities=19% Similarity=0.296 Sum_probs=172.4
Q ss_pred CCCCcccEEEEEEeCC--eEEEEecCCeEEEEe-CCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCc
Q 013717 138 NDSSSGSVKSVTFCDG--KIFTAHQDCKIRVWQ-LTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDA 214 (437)
Q Consensus 138 ~~~h~~~v~~l~~~~~--~l~s~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (437)
++||...|+....-+. ++++.+.|.++++|- .+.++....+.. .-..+
T Consensus 20 ~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-----------------------------~mP~~ 70 (404)
T KOG1409|consen 20 IEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-----------------------------YMPSP 70 (404)
T ss_pred hcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh-----------------------------hCCCC
Confidence 3788888888777644 499999999999995 444444443331 13457
Q ss_pred EEEEEeCC--CeEEEEECCCcEEEEECC----CcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccc
Q 013717 215 VTGLAVNN--GLIYSVSWDKSLKIWRAS----DLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRH 287 (437)
Q Consensus 215 v~~~~~~~--~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~ 287 (437)
++++.+.. ..|+.|-..|++.-+.+. ....++.+..|...+..+-|+..-. +++.+.|..+.---.+.+....
T Consensus 71 ~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg 150 (404)
T KOG1409|consen 71 CSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLG 150 (404)
T ss_pred ceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCccc
Confidence 78888877 788888899999888654 3344555567899999999987666 8888888776543222222111
Q ss_pred eeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcE
Q 013717 288 ALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTV 365 (437)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i 365 (437)
..... ...+++.+.-. +...|...|.|.+-.+.... ..+...+.+|...+.++.|++. .|++|..|..+
T Consensus 151 ~Y~~~-----~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~--~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~v 221 (404)
T KOG1409|consen 151 GYNFE-----TPASALQFDAL--YAFVGDHSGQITMLKLEQNG--CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSV 221 (404)
T ss_pred ceEee-----ccCCCCceeeE--EEEecccccceEEEEEeecC--CceEEEEcCcccceEEEEEcCCCcEEEeccccCce
Confidence 11111 11111222211 56677778888777665432 2355668899999999999976 99999999999
Q ss_pred EEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 366 RIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 366 ~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
.+||+...+ .....+.+|.+.|..+...+.- +.+++++.||.|.+|+++...
T Consensus 222 i~wdigg~~--g~~~el~gh~~kV~~l~~~~~t-----~~l~S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 222 IMWDIGGRK--GTAYELQGHNDKVQALSYAQHT-----RQLISCGEDGGIVVWNMNVKR 273 (404)
T ss_pred EEEeccCCc--ceeeeeccchhhhhhhhhhhhh-----eeeeeccCCCeEEEEecccee
Confidence 999998655 4667889999999999887766 479999999999999987653
No 235
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.41 E-value=6.6e-09 Score=93.29 Aligned_cols=269 Identities=12% Similarity=0.197 Sum_probs=162.8
Q ss_pred eEEEEeC--CCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEec----CCeEEEEeCCCC-cccccccccCccccce
Q 013717 118 EINVYDR--TGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQ----DCKIRVWQLTPT-KHHKLKTTLPTVNDRL 188 (437)
Q Consensus 118 ~v~vwd~--~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~----dg~i~iwd~~~~-~~~~~~~~~~~~~~~~ 188 (437)
.|.+|++ +++++..+... ........|+++++. |+++.. ++.|..|++... ..+..+...
T Consensus 14 gI~~~~~d~~~g~l~~~~~~----~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~------- 82 (345)
T PF10282_consen 14 GIYVFRFDEETGTLTLVQTV----AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSV------- 82 (345)
T ss_dssp EEEEEEEETTTTEEEEEEEE----EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEE-------
T ss_pred cEEEEEEcCCCCCceEeeee----cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeee-------
Confidence 6777776 55555555543 234556678887654 666655 578999988764 222222211
Q ss_pred eeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE-CCCcEEEEECCC-cceEEE---ee----------cc
Q 013717 189 LRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS-WDKSLKIWRASD-LRCLES---IK----------AH 251 (437)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~-~~~~~~---~~----------~~ 251 (437)
.........+++++ ++|+++. .+|.|.++++.. +..... +. ..
T Consensus 83 --------------------~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~ 142 (345)
T PF10282_consen 83 --------------------PSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQE 142 (345)
T ss_dssp --------------------EESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTS
T ss_pred --------------------ccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccc
Confidence 11334455788877 6777765 589999999987 433222 21 12
Q ss_pred cccEEEEEEecCCe-EEE-EeCCCeEEEecCCCCcccceeeEEee-CccccEEEEEEccCCCEEEEEe-CCCcEEEEECC
Q 013717 252 EDAVNAVAVSAGGT-VYT-GSADRKIRVWAKPFNEKRHALIATLE-KHKSAVNALALSDDGTVLFSGA-CDRSILVWDRE 327 (437)
Q Consensus 252 ~~~v~~~~~~~~~~-l~~-~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~ 327 (437)
.....++.++|+++ +++ .-....|.+|++............+. ......+.++|+|+++++++.. .++.|.+|++.
T Consensus 143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 34578999999998 444 34457899999875543232333332 3456789999999999886655 47889999998
Q ss_pred CCccceEEeeeecc----cc--cceE--EEEeeCCEEEEEe-CCCcEEEeeCCC-CCCeeeeeeecCCCCCeeEEEEEcc
Q 013717 328 DSANHMVVTGALRG----HG--KAIL--CLINVAGLLMSGS-ADRTVRIWQRGS-DGRFGCLAVLEGHTKPVKSLTAVTE 397 (437)
Q Consensus 328 ~~~~~~~~~~~~~~----~~--~~i~--~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~h~~~v~~l~~~~~ 397 (437)
.............. .. .... .+++++++|+++. .++.|.+|++.. ......+............++++|+
T Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~ 302 (345)
T PF10282_consen 223 PSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPD 302 (345)
T ss_dssp TTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TT
T ss_pred ccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCC
Confidence 32222222222211 11 1233 4445566666554 567899999943 3334555555544555899999999
Q ss_pred CCCCceEEEEEecCCCcEEEEeec
Q 013717 398 EGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 398 ~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
+.. ++++.-.++.|.+|+++
T Consensus 303 g~~----l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 303 GRY----LYVANQDSNTVSVFDID 322 (345)
T ss_dssp SSE----EEEEETTTTEEEEEEEE
T ss_pred CCE----EEEEecCCCeEEEEEEe
Confidence 863 55566678899999986
No 236
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.40 E-value=1.1e-10 Score=103.88 Aligned_cols=185 Identities=19% Similarity=0.294 Sum_probs=143.6
Q ss_pred CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEe------C--------------Ce--EEEEecCCeE
Q 013717 108 HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC------D--------------GK--IFTAHQDCKI 164 (437)
Q Consensus 108 ~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~------~--------------~~--l~s~~~dg~i 164 (437)
..|+|....| .+++||...++. ...+.....-++..++..|. | +. ++-|...|.|
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~--~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQL--QQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred hheEeecCCCCeEEEEEccCcee--eeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4688888888 999999988533 33332222334455555552 1 22 7778888999
Q ss_pred EEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCc
Q 013717 165 RVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDL 242 (437)
Q Consensus 165 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~ 242 (437)
.+|++..++....+..- .|.+.|+++.++. ..|.+++.|+.+..|+...+
T Consensus 83 ~~ys~~~g~it~~~st~----------------------------~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~ 134 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTD----------------------------KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK 134 (541)
T ss_pred EEEEecCCeEEEEEecC----------------------------CCCCcceeeecccccCceEecCCceeEEEEecccc
Confidence 99999988765544432 4999999999887 99999999999999999999
Q ss_pred ceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccC-----CCEEEEE-
Q 013717 243 RCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDD-----GTVLFSG- 315 (437)
Q Consensus 243 ~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~- 315 (437)
+.+..++.....+.+++++||+. +++++ +.|++||+.+. +.+..|.+|.++|+++.|..+ |.+++++
T Consensus 135 ~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~k----evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa 208 (541)
T KOG4547|consen 135 VIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETK----EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSA 208 (541)
T ss_pred eeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCc----eEEEEecCCCcceEEEEEEEeccccccceeeecc
Confidence 99999999999999999999998 77765 79999987654 588999999999999999886 6666654
Q ss_pred eCCCcEEEEECCC
Q 013717 316 ACDRSILVWDRED 328 (437)
Q Consensus 316 ~~dg~i~i~d~~~ 328 (437)
..+..+.+|-++.
T Consensus 209 ~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 209 AAERGITVWVVEK 221 (541)
T ss_pred ccccceeEEEEEc
Confidence 3455677887665
No 237
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=2.4e-10 Score=106.16 Aligned_cols=227 Identities=10% Similarity=0.012 Sum_probs=139.5
Q ss_pred eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEec---CCeEEEEeCCCCcccccccccCccccceeeec
Q 013717 118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQ---DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFM 192 (437)
Q Consensus 118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 192 (437)
.|.++|.++...+.+. .|...+.+..|+|++ |+..+. +..|.+||+.+++....
T Consensus 183 ~l~~~d~dg~~~~~lt------~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l--------------- 241 (435)
T PRK05137 183 RLAIMDQDGANVRYLT------DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELV--------------- 241 (435)
T ss_pred EEEEECCCCCCcEEEe------cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEe---------------
Confidence 7889998764333332 477789999999776 666543 46899999987753221
Q ss_pred CCCCeeEEeeccceeeecCCCcEEEEEeCC--CeE-EEEECCCc--EEEEECCCcceEEEeecccccEEEEEEecCCe-E
Q 013717 193 LPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLI-YSVSWDKS--LKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-V 266 (437)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l-~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l 266 (437)
..+.+.+....|+| +.| ++.+.++. |.+||+.+++. ..+..+........|+|||+ +
T Consensus 242 ----------------~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i 304 (435)
T PRK05137 242 ----------------GNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQI 304 (435)
T ss_pred ----------------ecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEE
Confidence 12445566778888 454 45555655 77779887765 44544555677889999998 6
Q ss_pred EEEeC-CC--eEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC---CcEEEEECCCCccceEEeeeec
Q 013717 267 YTGSA-DR--KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD---RSILVWDREDSANHMVVTGALR 340 (437)
Q Consensus 267 ~~~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~ 340 (437)
+..+. +| .|.++|+.... ...+..+...+....|+|||++|+....+ ..|.+||+..+.. ..+. .
T Consensus 305 ~f~s~~~g~~~Iy~~d~~g~~-----~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt---~ 375 (435)
T PRK05137 305 VFESDRSGSPQLYVMNADGSN-----PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT---S 375 (435)
T ss_pred EEEECCCCCCeEEEEECCCCC-----eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-Eecc---C
Confidence 66653 33 57777765332 22233334556678899999999876643 3688888765432 1111 1
Q ss_pred ccccceEEEEeeCCEEEEEeC-C-----CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEc
Q 013717 341 GHGKAILCLINVAGLLMSGSA-D-----RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT 396 (437)
Q Consensus 341 ~~~~~i~~~~~~~~~l~~~~~-d-----g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~ 396 (437)
+....-..++++++.|+..+. . ..++++|+..+. ...+. ..+.+...+|+|
T Consensus 376 ~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~----~~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 376 GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN----EREVP-TPGDASDPAWSP 432 (435)
T ss_pred CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc----eEEcc-CCCCccCcccCC
Confidence 122222345555666555443 2 257788887644 22333 233466667776
No 238
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.40 E-value=2.8e-11 Score=100.42 Aligned_cols=246 Identities=11% Similarity=0.137 Sum_probs=163.1
Q ss_pred cceeeccccccccccCCCceeEEecCCCcce----eeeec-Ccc------------CCeEEEEee----CCEEEEEecC-
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLCI----NSVQL-GHK------------LPIGCIAVH----HNFLYAASSH- 117 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~----~~~~~-~h~------------~~V~~l~~~----~~~l~s~~~d- 117 (437)
..+.|.-....++++..+|.+.++..+.... ....+ .|. ..|..+.|. ...+.....|
T Consensus 29 s~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdk 108 (433)
T KOG1354|consen 29 SAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDK 108 (433)
T ss_pred eeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCc
Confidence 4678888999999999999999988755443 33333 443 467888886 3445555556
Q ss_pred eEEEEeCCCCceee------------------eeccc-------------cCCCCcccEEEEEEeCCe-EEEEecCCeEE
Q 013717 118 EINVYDRTGTTWTS------------------INTFN-------------DNDSSSGSVKSVTFCDGK-IFTAHQDCKIR 165 (437)
Q Consensus 118 ~v~vwd~~~~~~~~------------------~~~~~-------------~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~ 165 (437)
+|++|.+.....+. +..+. ...+|...|++|.++.+. .+..+.|=.|.
T Consensus 109 tiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSADdLRIN 188 (433)
T KOG1354|consen 109 TIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSADDLRIN 188 (433)
T ss_pred ceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeeccceeee
Confidence 99999987532222 00000 015789999999999776 55556688999
Q ss_pred EEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCc
Q 013717 166 VWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDL 242 (437)
Q Consensus 166 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~ 242 (437)
+|+++-....-.+..+. ..-+..-..-|++..|+| +.++..+..|+|++-|++..
T Consensus 189 LWnlei~d~sFnIVDIK----------------------P~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~ 246 (433)
T KOG1354|consen 189 LWNLEIIDQSFNIVDIK----------------------PANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQS 246 (433)
T ss_pred eccccccCCceeEEEcc----------------------ccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhh
Confidence 99987433211111110 001112234577888998 88899999999999999843
Q ss_pred ceE----EEe------------ecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCcc---------
Q 013717 243 RCL----ESI------------KAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHK--------- 297 (437)
Q Consensus 243 ~~~----~~~------------~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--------- 297 (437)
.+- ..+ ..--..|..+.|+++|+.+..-.--+|++||+..... ++.++.-|.
T Consensus 247 aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~---pv~t~~vh~~lr~kLc~l 323 (433)
T KOG1354|consen 247 ALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAK---PVETYPVHEYLRSKLCSL 323 (433)
T ss_pred hhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCC---cceEEeehHhHHHHHHHH
Confidence 211 011 1123468899999999966555568999999865543 333333221
Q ss_pred ---ccE---EEEEEccCCCEEEEEeCCCcEEEEECCCCc
Q 013717 298 ---SAV---NALALSDDGTVLFSGACDRSILVWDREDSA 330 (437)
Q Consensus 298 ---~~i---~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 330 (437)
..| ..++|+.++.++++|+.....++|+...+.
T Consensus 324 YEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 324 YENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred hhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 122 467889888999999999999999977654
No 239
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.39 E-value=8.9e-10 Score=100.74 Aligned_cols=268 Identities=16% Similarity=0.090 Sum_probs=163.2
Q ss_pred EeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCc
Q 013717 105 AVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPT 183 (437)
Q Consensus 105 ~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 183 (437)
...++.++.++.+ .|..+|..+++..-...+. ..........++.++.++.+|.+..+|..+++.......
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~-----~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~--- 133 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDAETGKRLWRVDLD-----ERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKL--- 133 (377)
T ss_pred EEECCEEEEECCCCeEEEEEccCCcEeeeecCC-----CCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeecc---
Confidence 4457888888888 9999999886433222221 111123344566788899999999999988875443321
Q ss_pred cccceeeecCCCCeeEEeeccceeeecCCCcEE-EEEeCCCeEEEEECCCcEEEEECCCcceEEEeecccccEE-----E
Q 013717 184 VNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT-GLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVN-----A 257 (437)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-----~ 257 (437)
...+. ......+.++.+..+|.|..||.++++.+..+......+. +
T Consensus 134 ----------------------------~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~s 185 (377)
T TIGR03300 134 ----------------------------SSEVLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSAS 185 (377)
T ss_pred ----------------------------CceeecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCC
Confidence 11111 1122336777888899999999999998877653322111 1
Q ss_pred EEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCcccc---EEEEEEcc--CCCEEEEEeCCCcEEEEECCCCccc
Q 013717 258 VAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSA---VNALALSD--DGTVLFSGACDRSILVWDREDSANH 332 (437)
Q Consensus 258 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~---i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~ 332 (437)
... .++.++.+..+|.+..+|.+++...++........... ...+.-+| .+..+++++.+|.++.||.++++..
T Consensus 186 p~~-~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~ 264 (377)
T TIGR03300 186 PVI-ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVL 264 (377)
T ss_pred CEE-ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEE
Confidence 112 24567888889999999987665333211000000000 00111111 3557888889999999999988754
Q ss_pred eEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCC-CCCeeEEEEEccCCCCceEEEEEecC
Q 013717 333 MVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGH-TKPVKSLTAVTEEGQNGVVSVFSGSL 411 (437)
Q Consensus 333 ~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~l~s~~~ 411 (437)
.... . .........++.+++++.||.+..+|..+++ .+...... .......... ++ .|+.++.
T Consensus 265 W~~~--~----~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~---~~W~~~~~~~~~~ssp~i~--g~-----~l~~~~~ 328 (377)
T TIGR03300 265 WKRD--A----SSYQGPAVDDNRLYVTDADGVVVALDRRSGS---ELWKNDELKYRQLTAPAVV--GG-----YLVVGDF 328 (377)
T ss_pred Eeec--c----CCccCceEeCCEEEEECCCCeEEEEECCCCc---EEEccccccCCccccCEEE--CC-----EEEEEeC
Confidence 4332 1 1123344567788888999999999998876 33322111 1112222222 22 6888999
Q ss_pred CCcEEEEeeccCCC
Q 013717 412 DGEIRAWQVSVSCP 425 (437)
Q Consensus 412 dg~i~iw~~~~~~~ 425 (437)
||.|+++|..+++.
T Consensus 329 ~G~l~~~d~~tG~~ 342 (377)
T TIGR03300 329 EGYLHWLSREDGSF 342 (377)
T ss_pred CCEEEEEECCCCCE
Confidence 99999999887764
No 240
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.39 E-value=6.7e-10 Score=99.52 Aligned_cols=308 Identities=11% Similarity=0.088 Sum_probs=171.1
Q ss_pred cccCCCceeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEE
Q 013717 72 QKLSPDETINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKS 147 (437)
Q Consensus 72 ~s~s~dg~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~ 147 (437)
.+...++.+.+.|.... +.+..+ .....-..+.|+ |+++++++.| .|.++|+.++ +.+.++. -......
T Consensus 10 V~~~~~~~v~viD~~t~-~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~--~~v~~i~----~G~~~~~ 82 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATN-KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG--KVVATIK----VGGNPRG 82 (369)
T ss_dssp EEEGGGTEEEEEETTT--SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS--SEEEEEE-----SSEEEE
T ss_pred EEecCCCEEEEEECCCC-eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc--cEEEEEe----cCCCcce
Confidence 34566889999987764 444444 322333445676 8999999999 9999999995 4555552 3455788
Q ss_pred EEEeCCe--EE-EEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--
Q 013717 148 VTFCDGK--IF-TAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-- 222 (437)
Q Consensus 148 l~~~~~~--l~-s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-- 222 (437)
+++++++ ++ +.-.++.+.++|.++.+..+.+....... ......+.++..++
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~-----------------------~~~~~Rv~aIv~s~~~ 139 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPV-----------------------DGPESRVAAIVASPGR 139 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-T-----------------------TTS---EEEEEE-SSS
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccc-----------------------cccCCCceeEEecCCC
Confidence 9998654 44 44578999999999877655443211000 01334666776655
Q ss_pred C-eEEEEECCCcEEEEECCCcceEE-EeecccccEEEEEEecCCe-E-EEEeCCCeEEEecCCCCcccceeeEEee----
Q 013717 223 G-LIYSVSWDKSLKIWRASDLRCLE-SIKAHEDAVNAVAVSAGGT-V-YTGSADRKIRVWAKPFNEKRHALIATLE---- 294 (437)
Q Consensus 223 ~-~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~-l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~---- 294 (437)
. ++++.-..+.|.+.|....+.+. .............|+|+++ + +....++.|.++|..... ....+.
T Consensus 140 ~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k----~v~~i~~g~~ 215 (369)
T PF02239_consen 140 PEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK----LVALIDTGKK 215 (369)
T ss_dssp SEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE----EEEEEE-SSS
T ss_pred CEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccce----EEEEeecccc
Confidence 4 44444455889888987765433 2223455677899999998 4 445668899999876543 222221
Q ss_pred CccccEEEEE-------E--ccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEE----
Q 013717 295 KHKSAVNALA-------L--SDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSG---- 359 (437)
Q Consensus 295 ~~~~~i~~~~-------~--~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~---- 359 (437)
.|..++..+- | ...+...++.-....+.+||..+.+ ....+...... ..+..+ +.++++.
T Consensus 216 p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wk----vv~~I~~~G~g-lFi~thP~s~~vwvd~~~~ 290 (369)
T PF02239_consen 216 PHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWK----VVKTIPTQGGG-LFIKTHPDSRYVWVDTFLN 290 (369)
T ss_dssp BEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTS----EEEEEE-SSSS---EE--TT-SEEEEE-TT-
T ss_pred ccccccccccCCCcceEEeeccccceecccccCCccccchhhcCe----EEEEEECCCCc-ceeecCCCCccEEeeccCC
Confidence 2333333221 1 1122333222233455667776554 33334434444 444444 4477777
Q ss_pred eCCCcEEEeeCCCCCCeeeeeeecCC-CCCeeEEEEEccCCCCceEEEEEecCCC-cEEEEeeccCCC
Q 013717 360 SADRTVRIWQRGSDGRFGCLAVLEGH-TKPVKSLTAVTEEGQNGVVSVFSGSLDG-EIRAWQVSVSCP 425 (437)
Q Consensus 360 ~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~l~s~~~dg-~i~iw~~~~~~~ 425 (437)
...++|.++|.++.+ .+.++... ...+..+.|++++.+ ..+|.-.++ .|.+||..+.+.
T Consensus 291 ~~~~~v~viD~~tl~---~~~~i~~~~~~~~~h~ef~~dG~~----v~vS~~~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 291 PDADTVQVIDKKTLK---VVKTITPGPGKRVVHMEFNPDGKE----VWVSVWDGNGAIVVYDAKTLKE 351 (369)
T ss_dssp SSHT-EEEEECCGTE---EEE-HHHHHT--EEEEEE-TTSSE----EEEEEE--TTEEEEEETTTTEE
T ss_pred CCCceEEEEECcCcc---eeEEEeccCCCcEeccEECCCCCE----EEEEEecCCCEEEEEECCCcEE
Confidence 456899999999864 44454322 235899999999975 555555444 899999887654
No 241
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.38 E-value=2.9e-10 Score=101.13 Aligned_cols=204 Identities=17% Similarity=0.263 Sum_probs=142.6
Q ss_pred eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCc
Q 013717 154 KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKS 233 (437)
Q Consensus 154 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~ 233 (437)
.++....||.+++|+...++....+................ +.......+.. ....+...+.....++-|...|.
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~---L~~~~s~~k~~--~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG---LSADYSPMKWL--SLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE---EEeccchHHHH--hHHHHhhccCCceEEEeecCCcc
Confidence 38888999999999999887666555332111100000000 00000000000 00001111112267888999999
Q ss_pred EEEEECCCcceEEEee--cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCC
Q 013717 234 LKIWRASDLRCLESIK--AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGT 310 (437)
Q Consensus 234 i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 310 (437)
|.+|++..++....+. .|.+.|+++.++.+-. |.+++.|+.+..|+.. ....+..+......+.+++.+|||.
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~----~~~~~~~~~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEK----EKVIIRIWKEQKPLVSSLCISPDGK 157 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecc----cceeeeeeccCCCccceEEEcCCCC
Confidence 9999999999888876 6889999999887666 9999999999999654 3457778888888999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee-------CC-EEEEEeCCCcEEEeeCCC
Q 013717 311 VLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV-------AG-LLMSGSADRTVRIWQRGS 372 (437)
Q Consensus 311 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~-~l~~~~~dg~i~iwd~~~ 372 (437)
.+++++ +.|++||+++.+ ....+.+|.+.|.+++|. |. +|.+...+..+.+|-+..
T Consensus 158 ~l~~as--~~ik~~~~~~ke----vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 158 ILLTAS--RQIKVLDIETKE----VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEecc--ceEEEEEccCce----EEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999986 689999998876 666789999999988875 23 444555566788887765
No 242
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.38 E-value=2.2e-10 Score=93.14 Aligned_cols=270 Identities=15% Similarity=0.178 Sum_probs=173.8
Q ss_pred eEEEEeCCCCceeeeeccccCCCCcccEEEEEEe-----CC-eEEEEecCCeEEEEeCCCCcccccccccCccccceeee
Q 013717 118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC-----DG-KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRF 191 (437)
Q Consensus 118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-----~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 191 (437)
.+.+|+++..+.....++. ......+..+.|. .+ .++-+..+|.|.++..........+..+....-
T Consensus 47 kl~Lys~~d~~~~~l~~~q--~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki----- 119 (339)
T KOG0280|consen 47 KLHLYSLEDMKLSPLDTLQ--CTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKI----- 119 (339)
T ss_pred ceEEEeecccccCccceee--eecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhh-----
Confidence 5677777763332222221 2244567777776 12 167777889999988765443333322211000
Q ss_pred cCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcce--EEEeecccccEEEEEEecCCe--
Q 013717 192 MLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRC--LESIKAHEDAVNAVAVSAGGT-- 265 (437)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~-- 265 (437)
......++.|++ ..++++..+|.+.+-+...... ++.++.|+-+++-..|+....
T Consensus 120 -------------------~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnl 180 (339)
T KOG0280|consen 120 -------------------SVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNL 180 (339)
T ss_pred -------------------hheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCce
Confidence 111234556665 7788889999999766655544 347889999999999986554
Q ss_pred EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEcc-CCCEEEEEeCCCcEEEEECCCCccceEEeeeeccccc
Q 013717 266 VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSD-DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGK 344 (437)
Q Consensus 266 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 344 (437)
+.+|+.|+.+..||++... .......+.|...|.+|.-+| .+.+|++|+.|..|++||.++-..+.. . ..-.+
T Consensus 181 vytGgDD~~l~~~D~R~p~--~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~-~---~~v~G 254 (339)
T KOG0280|consen 181 VYTGGDDGSLSCWDIRIPK--TFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF-K---AKVGG 254 (339)
T ss_pred EEecCCCceEEEEEecCCc--ceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccc-c---Ccccc
Confidence 8999999999999998332 122333556888999999887 678999999999999999985443321 1 12347
Q ss_pred ceEEEEeeCC----EEEEEeCCCcEEEeeCCCCCC--eeeeeeecCCCCCeeEEEEEccCCCCceEEEEEec-CCCcEE-
Q 013717 345 AILCLINVAG----LLMSGSADRTVRIWQRGSDGR--FGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGS-LDGEIR- 416 (437)
Q Consensus 345 ~i~~~~~~~~----~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~-~dg~i~- 416 (437)
.|..+.+++. +|+++-..| .+|-+...+.. ...+...+.|.+-...-.|.... -+|+|++ .|..++
T Consensus 255 GVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~-----~~lATCsFYDk~~~~ 328 (339)
T KOG0280|consen 255 GVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKD-----SFLATCSFYDKKIRQ 328 (339)
T ss_pred ceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeecccccccc-----ceeeeeeccccceee
Confidence 7888888766 344444444 77777665331 11345556788777777774432 2688875 477766
Q ss_pred EEeeccCCC
Q 013717 417 AWQVSVSCP 425 (437)
Q Consensus 417 iw~~~~~~~ 425 (437)
+|-.-++++
T Consensus 329 ~Wl~~t~~~ 337 (339)
T KOG0280|consen 329 LWLHITGEP 337 (339)
T ss_pred eeeeccCCc
Confidence 887766654
No 243
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.37 E-value=7.1e-11 Score=95.94 Aligned_cols=150 Identities=8% Similarity=0.130 Sum_probs=96.0
Q ss_pred EEEEEecCCe-EE-EEe---------CCCeEEEecCCCCcccceeeEEeeC-ccccEEEEEEccCCCEEEEE--eCCCcE
Q 013717 256 NAVAVSAGGT-VY-TGS---------ADRKIRVWAKPFNEKRHALIATLEK-HKSAVNALALSDDGTVLFSG--ACDRSI 321 (437)
Q Consensus 256 ~~~~~~~~~~-l~-~~~---------~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~--~~dg~i 321 (437)
..+.|+++|. |+ ... .-|...+|.++.... ....+.- ..++|.+++|+|+|+.|++. ..++.|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~---~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v 85 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI---PVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKV 85 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC---ccceeeccCCCceEEEEECcCCCEEEEEEccCCccc
Confidence 3567788886 32 222 124456665543322 1222222 34579999999999987654 467899
Q ss_pred EEEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeC---CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEc
Q 013717 322 LVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSA---DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT 396 (437)
Q Consensus 322 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~ 396 (437)
.+||++ .+ ....+. ...+..+.|+ |++|++++. .|.|.+||.+..+ .+.... | ..++.++|+|
T Consensus 86 ~lyd~~-~~----~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~---~i~~~~-~-~~~t~~~WsP 153 (194)
T PF08662_consen 86 TLYDVK-GK----KIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK---KISTFE-H-SDATDVEWSP 153 (194)
T ss_pred EEEcCc-cc----EeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE---Eeeccc-c-CcEEEEEEcC
Confidence 999996 22 222232 3344455555 568888764 4679999999644 555543 3 3578999999
Q ss_pred cCCCCceEEEEEecC------CCcEEEEeeccCCC
Q 013717 397 EEGQNGVVSVFSGSL------DGEIRAWQVSVSCP 425 (437)
Q Consensus 397 ~~~~~~~~~l~s~~~------dg~i~iw~~~~~~~ 425 (437)
++. +|+++.. |+.++||++.....
T Consensus 154 dGr-----~~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 154 DGR-----YLATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred CCC-----EEEEEEeccceeccccEEEEEecCeEe
Confidence 995 6777753 88999999975543
No 244
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=4.4e-10 Score=103.77 Aligned_cols=225 Identities=9% Similarity=0.006 Sum_probs=137.8
Q ss_pred eeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEe---cC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC
Q 013717 79 TINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAAS---SH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD 152 (437)
Q Consensus 79 ~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~---~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 152 (437)
.|.+++.+...... ...+...+.+.+|+ |+.|+..+ .+ .|.+|++.+++.+.+..+ . +.+....|+|
T Consensus 180 ~l~~~d~dg~~~~~-lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~---~---~~~~~~~~SP 252 (429)
T PRK03629 180 ELRVSDYDGYNQFV-VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF---P---RHNGAPAFSP 252 (429)
T ss_pred eEEEEcCCCCCCEE-eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC---C---CCcCCeEECC
Confidence 56666665433222 22566789999999 88887654 34 899999998765555443 2 2344678997
Q ss_pred Ce--EEE-EecCC--eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeE
Q 013717 153 GK--IFT-AHQDC--KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLI 225 (437)
Q Consensus 153 ~~--l~s-~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l 225 (437)
++ |+. .+.+| .|.+||+++++..... .+...+....|+| +.|
T Consensus 253 DG~~La~~~~~~g~~~I~~~d~~tg~~~~lt-------------------------------~~~~~~~~~~wSPDG~~I 301 (429)
T PRK03629 253 DGSKLAFALSKTGSLNLYVMDLASGQIRQVT-------------------------------DGRSNNTEPTWFPDSQNL 301 (429)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCEEEcc-------------------------------CCCCCcCceEECCCCCEE
Confidence 76 543 34454 5888999876533221 1334566788888 667
Q ss_pred EEEECC-Cc--EEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCC---CeEEEecCCCCcccceeeEEeeCccc
Q 013717 226 YSVSWD-KS--LKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSAD---RKIRVWAKPFNEKRHALIATLEKHKS 298 (437)
Q Consensus 226 ~~~~~d-g~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~ 298 (437)
+..+.+ +. |.++|+.+++. ..+...........|+|||+ ++..+.+ ..|.+||+..+. ...+... .
T Consensus 302 ~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~-----~~~Lt~~-~ 374 (429)
T PRK03629 302 AYTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-----VQVLTDT-F 374 (429)
T ss_pred EEEeCCCCCceEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCC-----eEEeCCC-C
Confidence 666543 44 55557766654 33333444566789999998 6655443 357888886543 1222211 2
Q ss_pred cEEEEEEccCCCEEEEEeCCCc---EEEEECCCCccceEEeeeecccccceEEEEeeC
Q 013717 299 AVNALALSDDGTVLFSGACDRS---ILVWDREDSANHMVVTGALRGHGKAILCLINVA 353 (437)
Q Consensus 299 ~i~~~~~~~~~~~l~~~~~dg~---i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 353 (437)
......|+|||++|+.++.++. +.++++... .. ..+.+|.+.+...+|++
T Consensus 375 ~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~-~~----~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 375 LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGR-FK----ARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCCCceECCCCCEEEEEEcCCCceEEEEEECCCC-Ce----EECccCCCCcCCcccCC
Confidence 2346789999999999888764 667777433 22 22344555565555554
No 245
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.35 E-value=3.3e-10 Score=105.07 Aligned_cols=195 Identities=12% Similarity=0.078 Sum_probs=121.2
Q ss_pred CCCcEEEEEeCC--CeEEEEECC---CcEEEEECCCcceEEEeecccccEEEEEEecCCe-EE-EEeCCC--eEEEecCC
Q 013717 211 HGDAVTGLAVNN--GLIYSVSWD---KSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VY-TGSADR--KIRVWAKP 281 (437)
Q Consensus 211 ~~~~v~~~~~~~--~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~dg--~v~iwd~~ 281 (437)
+...+.+..|+| +.|+..+.+ ..|.+||+.+++... +....+...+.+|+|||+ ++ +.+.+| .|.+||+.
T Consensus 202 ~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~ 280 (433)
T PRK04922 202 SAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLG 280 (433)
T ss_pred CCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECC
Confidence 666788889988 677776633 469999998876543 333445556889999998 54 445555 58888886
Q ss_pred CCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC-CCc--EEEEECCCCccceEEeeeecccccceEEEEeeCCEEEE
Q 013717 282 FNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC-DRS--ILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMS 358 (437)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~ 358 (437)
.+. ...+..+.......+|+|||++|+..+. +|. |+++|+.+++... +. ..+....-..+++++++|+.
T Consensus 281 ~g~-----~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt--~~g~~~~~~~~SpDG~~Ia~ 352 (433)
T PRK04922 281 SRQ-----LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LT--FQGNYNARASVSPDGKKIAM 352 (433)
T ss_pred CCC-----eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-ee--cCCCCccCEEECCCCCEEEE
Confidence 543 2334444445567899999998887654 444 6777776654221 11 22222222455666777776
Q ss_pred EeCCC---cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCC--CcEEEEeeccC
Q 013717 359 GSADR---TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLD--GEIRAWQVSVS 423 (437)
Q Consensus 359 ~~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d--g~i~iw~~~~~ 423 (437)
.+.++ .|.+||+.+++ . ..+. +........|+|++.. ++++.... +.|.+++++..
T Consensus 353 ~~~~~~~~~I~v~d~~~g~---~-~~Lt-~~~~~~~p~~spdG~~----i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 353 VHGSGGQYRIAVMDLSTGS---V-RTLT-PGSLDESPSFAPNGSM----VLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred EECCCCceeEEEEECCCCC---e-EECC-CCCCCCCceECCCCCE----EEEEEecCCceEEEEEECCCC
Confidence 55433 69999998765 2 2332 2224556789999853 34444333 35777777554
No 246
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.35 E-value=4.7e-11 Score=97.80 Aligned_cols=272 Identities=14% Similarity=0.232 Sum_probs=167.7
Q ss_pred CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCc---eeeeeccccCCCC------------cccEEEEEEeCCe---
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTT---WTSINTFNDNDSS------------SGSVKSVTFCDGK--- 154 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~---~~~~~~~~~~~~h------------~~~v~~l~~~~~~--- 154 (437)
...+.|+++.|. |.||++|..+ .|.+|..+... .+....+ ++| ...|..|.|..+.
T Consensus 24 tead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teF---Qshe~EFDYLkSleieEKin~I~w~~~t~r~ 100 (460)
T COG5170 24 TEADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEF---QSHELEFDYLKSLEIEEKINAIEWFDDTGRN 100 (460)
T ss_pred cccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhh---cccccchhhhhhccHHHHhhheeeecCCCcc
Confidence 445789999999 9999999998 99999876532 2222222 333 3468888887332
Q ss_pred -EEEEecCCeEEEEeCCCCccccccc-cc------Ccc-----ccceeeecCCCCeeEEeeccceee-ecCCCcEEEEEe
Q 013717 155 -IFTAHQDCKIRVWQLTPTKHHKLKT-TL------PTV-----NDRLLRFMLPNSYVTVRRHKKKLW-IEHGDAVTGLAV 220 (437)
Q Consensus 155 -l~s~~~dg~i~iwd~~~~~~~~~~~-~~------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~ 220 (437)
++..+.|.+|++|.+.......... .+ +.. ...+...-.......+...+.+++ ..|...|+++.+
T Consensus 101 hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~ 180 (460)
T COG5170 101 HFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISF 180 (460)
T ss_pred eEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeee
Confidence 8888899999999987542211100 00 000 000111111222333344444444 678889999999
Q ss_pred CC-CeEEEEECCCcEEEEECCCcce---EEEeecc-----cccEEEEEEecCCe--EEEEeCCCeEEEecCCCCccccee
Q 013717 221 NN-GLIYSVSWDKSLKIWRASDLRC---LESIKAH-----EDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHAL 289 (437)
Q Consensus 221 ~~-~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~-----~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~ 289 (437)
+. ...+..+.|-.|.+|++.-... +..++.| ..-|++..|+|... +...+..|.|++-|++........
T Consensus 181 NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~ 260 (460)
T COG5170 181 NSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNS 260 (460)
T ss_pred cCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCc
Confidence 88 5555556788899999864332 2222222 34688899999765 778888999999999843211111
Q ss_pred e------------EEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeec---------ccccce--
Q 013717 290 I------------ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALR---------GHGKAI-- 346 (437)
Q Consensus 290 ~------------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---------~~~~~i-- 346 (437)
. .-+.+-...|..+.|+++|+++++-+. -+|+|||.+..+.+........ .....|
T Consensus 261 ~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifd 339 (460)
T COG5170 261 KKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFD 339 (460)
T ss_pred hhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceee
Confidence 1 112223457889999999999988754 5799999987655433221100 011222
Q ss_pred -EEEEeeCC--EEEEEeCCCcEEEeeCC
Q 013717 347 -LCLINVAG--LLMSGSADRTVRIWQRG 371 (437)
Q Consensus 347 -~~~~~~~~--~l~~~~~dg~i~iwd~~ 371 (437)
..+.++|+ .+++|+..+..-||-..
T Consensus 340 kFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 340 KFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eEEEEecCCcccccccccccceeeeccc
Confidence 34556655 78888888777777644
No 247
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.34 E-value=1.5e-11 Score=121.96 Aligned_cols=192 Identities=15% Similarity=0.217 Sum_probs=150.8
Q ss_pred eeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEee-cccccEEEEEEecCCe-EEEEeCCCeEEEecCC
Q 013717 206 KLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIK-AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKP 281 (437)
Q Consensus 206 ~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~ 281 (437)
.....+-..|.++.-+| .+.++|+.||.+++|....++.+..++ .....|+.+.|+.+|. +..+..||.+.+|...
T Consensus 2202 ~~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2202 VMIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred eEeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC
Confidence 34455667788888888 899999999999999999888888876 3348899999999888 9999999999999764
Q ss_pred CCcccceeeEEeeCccccEEEEEEccCCCEEEEEe---CCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EE
Q 013717 282 FNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA---CDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LL 356 (437)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l 356 (437)
.++....+.|......+.|-. ..+++++ .++.+.+||.--..... +.. ..|.+.++++++-|+ +|
T Consensus 2282 -----pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s-~v~--~~H~~gaT~l~~~P~~qll 2351 (2439)
T KOG1064|consen 2282 -----PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNS-LVH--TCHDGGATVLAYAPKHQLL 2351 (2439)
T ss_pred -----CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccc-eee--eecCCCceEEEEcCcceEE
Confidence 346677788999999999875 5677654 47899999976543332 222 668888888888776 99
Q ss_pred EEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 357 MSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 357 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
++|+.+|.|++||++..+ ++..++. +.. . .++++|+..|.|+||++.....
T Consensus 2352 isggr~G~v~l~D~rqrq---l~h~~~~---------~~~-~-----~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2352 ISGGRKGEVCLFDIRQRQ---LRHTFQA---------LDT-R-----EYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred EecCCcCcEEEeehHHHH---HHHHhhh---------hhh-h-----heeeccCcccceEEEEccccch
Confidence 999999999999999755 4444443 332 2 2899999999999999987643
No 248
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=1.7e-11 Score=108.07 Aligned_cols=286 Identities=16% Similarity=0.209 Sum_probs=187.5
Q ss_pred eeeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCc-----eeeeeccccCCCCcccEEEEEEeCCeEEEEec
Q 013717 90 INSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTT-----WTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQ 160 (437)
Q Consensus 90 ~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~-----~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~ 160 (437)
.....+ ||+..|.+++-- .+-+++++.| +|++|.++... ..+..+ +..|+.+|..+.|..+.-..++.
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfT---Y~aHkk~i~~igfL~~lr~i~Sc 802 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFT---YQAHKKPIHDIGFLADLRSIASC 802 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeE---hhhccCcccceeeeeccceeeec
Confidence 344556 999999998764 7889999999 99999997631 112223 36799999999999776445566
Q ss_pred CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe-CCCeEEEE-ECCCcEEEEE
Q 013717 161 DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV-NNGLIYSV-SWDKSLKIWR 238 (437)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~-~~dg~i~iwd 238 (437)
||-|.+||.--+.........+. .+..+.|.|+.- +...++.| +...+|+++|
T Consensus 803 D~giHlWDPFigr~Laq~~dapk-------------------------~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~D 857 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMEDAPK-------------------------EGAGGNIKCLENVDRHILIAGCSAESTVKLFD 857 (1034)
T ss_pred cCcceeecccccchhHhhhcCcc-------------------------cCCCceeEecccCcchheeeeccchhhheeee
Confidence 89999999876654443332221 123344555543 22444444 7889999999
Q ss_pred CCCcceEEEee-----cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEE
Q 013717 239 ASDLRCLESIK-----AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVL 312 (437)
Q Consensus 239 ~~~~~~~~~~~-----~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 312 (437)
.+.++....++ +.+..+.+++..+.|. ++++-.+|.|.+.|.+++. .+..++........++ .|..+.|
T Consensus 858 aRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~----vINswrpmecdllqla-apsdq~L 932 (1034)
T KOG4190|consen 858 ARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK----VINSWRPMECDLLQLA-APSDQAL 932 (1034)
T ss_pred cccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc----eeccCCcccchhhhhc-CchhHHH
Confidence 99988777765 3456789999999998 9999999999999887654 5555554444444444 3455677
Q ss_pred EEEeCCCcEEE-EECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCC-Ceeeeeeec--CCCCC
Q 013717 313 FSGACDRSILV-WDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDG-RFGCLAVLE--GHTKP 388 (437)
Q Consensus 313 ~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~--~h~~~ 388 (437)
+....|.++.+ |-.-++.... .......+..-+..-|.-|+++.....+.+|.-.... ....+.+++ ...+.
T Consensus 933 ~~saldHslaVnWhaldgimh~----q~kpppepahflqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~ 1008 (1034)
T KOG4190|consen 933 AQSALDHSLAVNWHALDGIMHL----QDKPPPEPAHFLQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGT 1008 (1034)
T ss_pred HhhcccceeEeeehhcCCeeee----ccCCCCcchhhhhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCc
Confidence 77777888888 7665443211 1121222222333345567777777788888532211 111222332 23466
Q ss_pred eeEEEEEccCCCCceEEEEEecCCCcEEE
Q 013717 389 VKSLTAVTEEGQNGVVSVFSGSLDGEIRA 417 (437)
Q Consensus 389 v~~l~~~~~~~~~~~~~l~s~~~dg~i~i 417 (437)
.++++..|-.. -++.|...|.|.+
T Consensus 1009 lTala~LPLN~-----afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1009 LTALAPLPLNC-----AFLAGNEHGAIAL 1032 (1034)
T ss_pred cceeeeccccc-----hhhccCCCCceee
Confidence 78888888763 4777888888876
No 249
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.33 E-value=2e-10 Score=93.26 Aligned_cols=127 Identities=18% Similarity=0.289 Sum_probs=84.7
Q ss_pred cEEEEECCC-cceEEEee-cccccEEEEEEecCCe-EEE--EeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEcc
Q 013717 233 SLKIWRASD-LRCLESIK-AHEDAVNAVAVSAGGT-VYT--GSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSD 307 (437)
Q Consensus 233 ~i~iwd~~~-~~~~~~~~-~~~~~v~~~~~~~~~~-l~~--~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 307 (437)
...+|.++. ......+. ...++|.+++|+|+|. |++ |..++.|.+||++ .+.+..+ +...+..+.|+|
T Consensus 38 ~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-----~~~i~~~--~~~~~n~i~wsP 110 (194)
T PF08662_consen 38 EFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-----GKKIFSF--GTQPRNTISWSP 110 (194)
T ss_pred eEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-----ccEeEee--cCCCceEEEECC
Confidence 344554422 23344443 2345799999999998 544 4567899999985 2344444 356788999999
Q ss_pred CCCEEEEEeC---CCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeC------CCcEEEeeCCC
Q 013717 308 DGTVLFSGAC---DRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSA------DRTVRIWQRGS 372 (437)
Q Consensus 308 ~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~------dg~i~iwd~~~ 372 (437)
+|++|++++. .|.|.+||.++.+. ....... .+..+.|+ |.+|+++.. |+.++||+...
T Consensus 111 ~G~~l~~~g~~n~~G~l~~wd~~~~~~----i~~~~~~--~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 111 DGRFLVLAGFGNLNGDLEFWDVRKKKK----ISTFEHS--DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCCEE----eeccccC--cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 9999999875 46799999985543 2222222 24455554 558887764 78899999874
No 250
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=1.2e-09 Score=101.48 Aligned_cols=196 Identities=12% Similarity=0.048 Sum_probs=124.4
Q ss_pred cCCCcEEEEEeCC--CeEEEEEC---CCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EE-EEeCCCe--EEEecC
Q 013717 210 EHGDAVTGLAVNN--GLIYSVSW---DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VY-TGSADRK--IRVWAK 280 (437)
Q Consensus 210 ~~~~~v~~~~~~~--~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~dg~--v~iwd~ 280 (437)
.+...+.+..|+| +.|+..+. +..|.+||+.+++.. .+..+.+.+...+|+|||+ |+ +.+.++. |.+||+
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~ 277 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDL 277 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEEC
Confidence 4777899999998 66776653 468999999888653 3444666778899999998 54 5555655 666677
Q ss_pred CCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC-CC--cEEEEECCCCccceEEeeeecccccce--EEEEeeCCE
Q 013717 281 PFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC-DR--SILVWDREDSANHMVVTGALRGHGKAI--LCLINVAGL 355 (437)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~ 355 (437)
.... ...+..+........|+|||+.|+..+. +| .|+++|+..+.... +.. +...+ ..++++++.
T Consensus 278 ~~~~-----~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~----~~~~~~~~~~SpdG~~ 347 (435)
T PRK05137 278 RSGT-----TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISF----GGGRYSTPVWSPRGDL 347 (435)
T ss_pred CCCc-----eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eec----CCCcccCeEECCCCCE
Confidence 5432 2344445556677899999998887663 33 68888887654221 211 12222 345556667
Q ss_pred EEEEeCC---CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCC-----cEEEEeeccCCC
Q 013717 356 LMSGSAD---RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDG-----EIRAWQVSVSCP 425 (437)
Q Consensus 356 l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg-----~i~iw~~~~~~~ 425 (437)
|+....+ ..|.+||+..+. ...+. ....+....|+|++.. ++++....+ .+.+++++.+..
T Consensus 348 ia~~~~~~~~~~i~~~d~~~~~----~~~lt-~~~~~~~p~~spDG~~----i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 348 IAFTKQGGGQFSIGVMKPDGSG----ERILT-SGFLVEGPTWAPNGRV----IMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred EEEEEcCCCceEEEEEECCCCc----eEecc-CCCCCCCCeECCCCCE----EEEEEccCCCCCcceEEEEECCCCce
Confidence 7665543 368888876543 12222 2234678899999853 444444332 577777766543
No 251
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=7.4e-10 Score=102.42 Aligned_cols=193 Identities=12% Similarity=0.063 Sum_probs=118.6
Q ss_pred CCCcEEEEEeCC--CeEEEEECC---CcEEEEECCCcceEEEeecccccEEEEEEecCCe-EE-EEeCCCeEEEecCCCC
Q 013717 211 HGDAVTGLAVNN--GLIYSVSWD---KSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VY-TGSADRKIRVWAKPFN 283 (437)
Q Consensus 211 ~~~~v~~~~~~~--~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~dg~v~iwd~~~~ 283 (437)
+...+.+.+|+| +.|+..+.+ ..|.+||+.+++... +....+.+.+.+|+|||. |+ +.+.+|...+|.++..
T Consensus 194 ~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~ 272 (427)
T PRK02889 194 SPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNAD 272 (427)
T ss_pred CCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECC
Confidence 666788899998 677766543 459999999887543 333445677899999998 55 5677888777765432
Q ss_pred cccceeeEEeeCccccEEEEEEccCCCEEEEEeC-CCcEEEEEC--CCCccceEEeeeecccccceEEEEeeCCEEEEEe
Q 013717 284 EKRHALIATLEKHKSAVNALALSDDGTVLFSGAC-DRSILVWDR--EDSANHMVVTGALRGHGKAILCLINVAGLLMSGS 360 (437)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~ 360 (437)
.. ....+..+........|+|||++|+..+. +|...+|.+ .++.. ..+. ..+....-..+++++++|+..+
T Consensus 273 ~~---~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt--~~g~~~~~~~~SpDG~~Ia~~s 346 (427)
T PRK02889 273 GS---GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVT--FTGSYNTSPRISPDGKLLAYIS 346 (427)
T ss_pred CC---CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEe--cCCCCcCceEECCCCCEEEEEE
Confidence 21 13334444455667889999998876554 456666654 33321 1111 2222122245666677877766
Q ss_pred CCC---cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEe
Q 013717 361 ADR---TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ 419 (437)
Q Consensus 361 ~dg---~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~ 419 (437)
.++ .|.+||+.+++ . ..+..+ .......|+|++.. ++++....|.-.++-
T Consensus 347 ~~~g~~~I~v~d~~~g~---~-~~lt~~-~~~~~p~~spdg~~----l~~~~~~~g~~~l~~ 399 (427)
T PRK02889 347 RVGGAFKLYVQDLATGQ---V-TALTDT-TRDESPSFAPNGRY----ILYATQQGGRSVLAA 399 (427)
T ss_pred ccCCcEEEEEEECCCCC---e-EEccCC-CCccCceECCCCCE----EEEEEecCCCEEEEE
Confidence 554 69999998765 1 222222 23467899999863 445444454433443
No 252
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.31 E-value=5.9e-10 Score=90.74 Aligned_cols=205 Identities=15% Similarity=0.167 Sum_probs=138.9
Q ss_pred cEEEEEeCCCeEEEEE------------CCCcEEEEECCCcceEE--Eee-cccccEEEEEEec---CCe--EEEEeCCC
Q 013717 214 AVTGLAVNNGLIYSVS------------WDKSLKIWRASDLRCLE--SIK-AHEDAVNAVAVSA---GGT--VYTGSADR 273 (437)
Q Consensus 214 ~v~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~--~~~-~~~~~v~~~~~~~---~~~--l~~~~~dg 273 (437)
++.+++..++.|++|+ .-|.+.+|++...+... +++ .....+..+.|.. ++. ++-+...|
T Consensus 16 ~~C~l~~~~~vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G 95 (339)
T KOG0280|consen 16 PICCLCHTRNVLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARG 95 (339)
T ss_pred CccccccccceEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccc
Confidence 4444444445555553 34678889887765543 111 2344566677753 333 67778889
Q ss_pred eEEEecCCCCcccceeeEEeeCc---cccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEE
Q 013717 274 KIRVWAKPFNEKRHALIATLEKH---KSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLI 350 (437)
Q Consensus 274 ~v~iwd~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~ 350 (437)
.|.+|......... .+..+... .....++.|++.+..++++..+|.+.+-+.... .....+.+++|...+....
T Consensus 96 ~i~~~r~~~~~ss~-~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~--~le~vq~wk~He~E~Wta~ 172 (339)
T KOG0280|consen 96 QIQLYRNDEDESSV-HLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEM--VLEKVQTWKVHEFEAWTAK 172 (339)
T ss_pred eEEEEeeccceeee-eecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEeccee--eeeecccccccceeeeeee
Confidence 99999654322111 11111111 112457889999999999999999996665432 2223346788888887777
Q ss_pred ee---CCEEEEEeCCCcEEEeeCCCCCCeeeeee-ecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec-cCCC
Q 013717 351 NV---AGLLMSGSADRTVRIWQRGSDGRFGCLAV-LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS-VSCP 425 (437)
Q Consensus 351 ~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~-~~~~ 425 (437)
|+ ++++.+|++|+.+..||++..+ ..+.. .+-|...|.+|.-+|..+. ++++|+.|-.|++||.+ .++|
T Consensus 173 f~~~~pnlvytGgDD~~l~~~D~R~p~--~~i~~n~kvH~~GV~SI~ss~~~~~----~I~TGsYDe~i~~~DtRnm~kP 246 (339)
T KOG0280|consen 173 FSDKEPNLVYTGGDDGSLSCWDIRIPK--TFIWHNSKVHTSGVVSIYSSPPKPT----YIATGSYDECIRVLDTRNMGKP 246 (339)
T ss_pred cccCCCceEEecCCCceEEEEEecCCc--ceeeecceeeecceEEEecCCCCCc----eEEEeccccceeeeehhcccCc
Confidence 65 5699999999999999999544 24443 5679999999999988775 99999999999999998 5665
Q ss_pred CC
Q 013717 426 NS 427 (437)
Q Consensus 426 ~~ 427 (437)
..
T Consensus 247 l~ 248 (339)
T KOG0280|consen 247 LF 248 (339)
T ss_pred cc
Confidence 43
No 253
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.31 E-value=1.5e-11 Score=122.03 Aligned_cols=185 Identities=19% Similarity=0.319 Sum_probs=139.4
Q ss_pred cEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717 144 SVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN 221 (437)
Q Consensus 144 ~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 221 (437)
.|.++.-+|.. .++|+.||.+++|....++........ -...|+.+.|+
T Consensus 2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-----------------------------g~s~vtr~~f~ 2260 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-----------------------------GNSRVTRSRFN 2260 (2439)
T ss_pred ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-----------------------------Ccchhhhhhhc
Confidence 34444444433 889999999999999888766555532 22677778777
Q ss_pred C--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEe---CCCeEEEecCCCCcccceeeEEeeCc
Q 013717 222 N--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGS---ADRKIRVWAKPFNEKRHALIATLEKH 296 (437)
Q Consensus 222 ~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~~ 296 (437)
. +.+..+..||.+.+|.+. .+.....+.|......+.|-.. .+++++ .++.+.+||....... .++. ..|
T Consensus 2261 ~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~s-~~~tag~s~d~~n~~lwDtl~~~~~-s~v~--~~H 2335 (2439)
T KOG1064|consen 2261 HQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIGS-LLATAGRSSDNRNVCLWDTLLPPMN-SLVH--TCH 2335 (2439)
T ss_pred ccCCceeeeccCCceeecccC-CcceeccccCCccccceeeeeh-hhhccccCCCCCcccchhcccCccc-ceee--eec
Confidence 6 888889999999999986 5667777889998999998762 255544 4789999997533321 2333 679
Q ss_pred cccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCC
Q 013717 297 KSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 374 (437)
.+.++++++.|..++|++|+.+|.|++||++..+ +.+.+.. +. ...++++|+..|.|+||++....
T Consensus 2336 ~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq----l~h~~~~-------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2336 DGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ----LRHTFQA-------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred CCCceEEEEcCcceEEEecCCcCcEEEeehHHHH----HHHHhhh-------hh-hhheeeccCcccceEEEEccccc
Confidence 9999999999999999999999999999997544 3322222 23 45599999999999999998754
No 254
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.30 E-value=3.1e-09 Score=94.17 Aligned_cols=309 Identities=12% Similarity=0.145 Sum_probs=183.3
Q ss_pred eeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEe----------cC-eEEEEeCCCCce
Q 013717 63 QTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAAS----------SH-EINVYDRTGTTW 129 (437)
Q Consensus 63 ~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~----------~d-~v~vwd~~~~~~ 129 (437)
.++++...++ .+.+..+.+++.......+..+.- .++++.|+ +.+|.+-- .. .+++|+++++.
T Consensus 41 ~~S~~G~lfA-~~~~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~- 116 (566)
T KOG2315|consen 41 AYSNNGRLFA-YSDNQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGV- 116 (566)
T ss_pred EEcCCCcEEE-EEcCCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeeeeccce-
Confidence 4444444444 667777888887665533333332 78999999 77776532 13 68899999842
Q ss_pred eeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCcc---------ccceeeecCCCC---
Q 013717 130 TSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTV---------NDRLLRFMLPNS--- 196 (437)
Q Consensus 130 ~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~--- 196 (437)
....+. ...+.. .+..|+.+. +++=-..+.+.+|+....+.....-..... ....++.+.+..
T Consensus 117 -~~s~~q--~k~Q~~-W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGa 192 (566)
T KOG2315|consen 117 -QRSQIQ--KKMQNG-WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGA 192 (566)
T ss_pred -ehhhee--hhhhcC-cccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCC
Confidence 222221 112222 688888665 554455677999998764322211111111 111111111111
Q ss_pred --eeEEeeccc---------eeeecCCCcEEEEEeCC---CeEEEEE--CC---------CcEEEEECCCcceEEEeecc
Q 013717 197 --YVTVRRHKK---------KLWIEHGDAVTGLAVNN---GLIYSVS--WD---------KSLKIWRASDLRCLESIKAH 251 (437)
Q Consensus 197 --~~~~~~~~~---------~~~~~~~~~v~~~~~~~---~~l~~~~--~d---------g~i~iwd~~~~~~~~~~~~~ 251 (437)
.+.+..... +.| ....-..+.|++ .+|+.++ -| .++++++++...+...+. .
T Consensus 193 Pa~vri~~~~~~~~~~~~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k 269 (566)
T KOG2315|consen 193 PASVRIYKYPEEGQHQPVANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-K 269 (566)
T ss_pred CcEEEEeccccccccchhhhccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-C
Confidence 111111000 000 011112455665 3444333 23 468888887444544443 5
Q ss_pred cccEEEEEEecCCe---EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC---CCcEEEEE
Q 013717 252 EDAVNAVAVSAGGT---VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC---DRSILVWD 325 (437)
Q Consensus 252 ~~~v~~~~~~~~~~---l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d 325 (437)
.++|.++.|+|+++ ++.|.+=-.+.|||++.+ ++.. -..++-+++-|+|.|++|+.++. .|.|-|||
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-----~v~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwD 342 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-----PVFD--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWD 342 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-----EeEe--CCCCCccceEECCCCCEEEEeecCCCCCceEEEe
Confidence 78999999999996 566777889999998743 3333 35677889999999999988776 58899999
Q ss_pred CCCCccceEEeeeecccccceEEEEeeCCEEEEEeC------CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccC
Q 013717 326 REDSANHMVVTGALRGHGKAILCLINVAGLLMSGSA------DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEE 398 (437)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 398 (437)
+.+.+ .+..+......+..++++|.+|+|++. |+.++||+..... +.... -......+.|-|..
T Consensus 343 v~n~K----~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~----l~~~~-f~sEL~qv~W~P~~ 412 (566)
T KOG2315|consen 343 VPNRK----LIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSL----LHEKM-FKSELLQVEWRPFN 412 (566)
T ss_pred ccchh----hccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCce----eehhh-hhHhHhheeeeecC
Confidence 98744 445556667778888888898888875 6789999988522 22111 11146666776543
No 255
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.26 E-value=2.7e-09 Score=99.19 Aligned_cols=207 Identities=14% Similarity=0.121 Sum_probs=126.4
Q ss_pred eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecC---CeEEEEeCCCCcccccccccCccccceeeec
Q 013717 118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQD---CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFM 192 (437)
Q Consensus 118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 192 (437)
.|.++|......+.+. .+...+....|++++ |+.+..+ ..|.+||+.+++.....
T Consensus 171 ~l~~~d~~g~~~~~l~------~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-------------- 230 (417)
T TIGR02800 171 ELQVADYDGANPQTIT------RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA-------------- 230 (417)
T ss_pred eEEEEcCCCCCCEEee------cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee--------------
Confidence 6888888764333322 355678889999776 6655433 47999999876432211
Q ss_pred CCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEE-EEECCC--cEEEEECCCcceEEEeecccccEEEEEEecCCe-E
Q 013717 193 LPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIY-SVSWDK--SLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-V 266 (437)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l 266 (437)
.+...+.+++|+| +.|+ +.+.++ .|++||+.+++.. .+..+........|+|+++ |
T Consensus 231 -----------------~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~s~dg~~l 292 (417)
T TIGR02800 231 -----------------SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPGIDTEPSWSPDGKSI 292 (417)
T ss_pred -----------------cCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE-ECCCCCCCCCCEEECCCCCEE
Confidence 1334455678887 4454 444444 5888998877543 3333444455778999998 6
Q ss_pred EEEeC-CC--eEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC---cEEEEECCCCccceEEeeeec
Q 013717 267 YTGSA-DR--KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR---SILVWDREDSANHMVVTGALR 340 (437)
Q Consensus 267 ~~~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~ 340 (437)
+..+. ++ .|.++|+.... ...+..+........|+|+|++|+.++.++ .|.+||+.++... .+.. .
T Consensus 293 ~~~s~~~g~~~iy~~d~~~~~-----~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~--~ 364 (417)
T TIGR02800 293 AFTSDRGGSPQIYMMDADGGE-----VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER-VLTD--T 364 (417)
T ss_pred EEEECCCCCceEEEEECCCCC-----EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE-EccC--C
Confidence 65544 33 56667765332 223333455677889999999999888776 7899998874321 1111 1
Q ss_pred ccccceEEEEeeCCEEEEEeCCC---cEEEeeCC
Q 013717 341 GHGKAILCLINVAGLLMSGSADR---TVRIWQRG 371 (437)
Q Consensus 341 ~~~~~i~~~~~~~~~l~~~~~dg---~i~iwd~~ 371 (437)
.. ..-..+++++..|+..+.++ .+++.+..
T Consensus 365 ~~-~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 365 GL-DESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred CC-CCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 11 11234566677666665543 35555544
No 256
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=3.4e-08 Score=87.72 Aligned_cols=318 Identities=9% Similarity=0.107 Sum_probs=179.9
Q ss_pred CceeEEecCCCcceeeeecCc---cCCeEEEEee--CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEe
Q 013717 77 DETINFSSASHLCINSVQLGH---KLPIGCIAVH--HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC 151 (437)
Q Consensus 77 dg~i~~~~~~~~~~~~~~~~h---~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 151 (437)
.-.+.+|...........+.+ ..++...+++ |+++|.+..+.++|++..... .+.+. ....+.++.|+
T Consensus 10 Se~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~--~~lt~-----~~~~~~~L~fS 82 (566)
T KOG2315|consen 10 SEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSDNQVVKVFEIATLK--VVLCV-----ELKKTYDLLFS 82 (566)
T ss_pred cceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEcCCeEEEEEccCCc--EEEEe-----ccceeeeeeec
Confidence 334556665444444444444 4455666666 777777776699999998853 23332 12278899998
Q ss_pred CCe--EEE-----EecC-----CeEEEEeCCCCcccccccccCccccceeeecCCCC---------ee--EEeeccceee
Q 013717 152 DGK--IFT-----AHQD-----CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNS---------YV--TVRRHKKKLW 208 (437)
Q Consensus 152 ~~~--l~s-----~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~--~~~~~~~~~~ 208 (437)
|-. |.+ .-.+ -.+.+|+++++.....+..- ...+....+..++. .. .........-
T Consensus 83 P~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k-~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~ 161 (566)
T KOG2315|consen 83 PKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKK-MQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQH 161 (566)
T ss_pred ccccccccccccccccCCCCCCCceeeeeeccceehhheehh-hhcCcccccccchhhhhhhhcceEEEEecCCccceee
Confidence 654 221 1122 34779999885322222111 11101111111111 11 1111111112
Q ss_pred ecCCCcEEEEEeCC----CeEEE-----EECCCcEEEEECCCcceEEEe---ecccccEEEEEEecCCe--EEEEe----
Q 013717 209 IEHGDAVTGLAVNN----GLIYS-----VSWDKSLKIWRASDLRCLESI---KAHEDAVNAVAVSAGGT--VYTGS---- 270 (437)
Q Consensus 209 ~~~~~~v~~~~~~~----~~l~~-----~~~dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~--l~~~~---- 270 (437)
.-|...|+.+.++| ..+++ .+.-+.|+||.......-..+ .-....=..+.|++-|. |+.++
T Consensus 162 kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVD 241 (566)
T KOG2315|consen 162 KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVD 241 (566)
T ss_pred eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeec
Confidence 33677888888887 34443 345677999987632211111 11222334577887776 33222
Q ss_pred -------CCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEE--EeCCCcEEEEECCCCccceEEeeeecc
Q 013717 271 -------ADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFS--GACDRSILVWDREDSANHMVVTGALRG 341 (437)
Q Consensus 271 -------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~ 341 (437)
.+..+++.++... .....+. ..++|.++.|+|+|+.+++ |-.-..+.|||++.. ....+.
T Consensus 242 ktn~SYYGEq~Lyll~t~g~----s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-----~v~df~- 310 (566)
T KOG2315|consen 242 KTNASYYGEQTLYLLATQGE----SVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-----PVFDFP- 310 (566)
T ss_pred CCCccccccceEEEEEecCc----eEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-----EeEeCC-
Confidence 2346777766521 2222232 4789999999999987665 455778999998742 222222
Q ss_pred cccceEEEE--eeCCEEEEEeC---CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecC-----
Q 013717 342 HGKAILCLI--NVAGLLMSGSA---DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSL----- 411 (437)
Q Consensus 342 ~~~~i~~~~--~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~----- 411 (437)
.++-.++- ++|++|+.++- -|.|-|||+.+.+ ++..+..-. -+-+.|+|++. +++|+..
T Consensus 311 -egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K---~i~~~~a~~--tt~~eW~PdGe-----~flTATTaPRlr 379 (566)
T KOG2315|consen 311 -EGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK---LIAKFKAAN--TTVFEWSPDGE-----YFLTATTAPRLR 379 (566)
T ss_pred -CCCccceEECCCCCEEEEeecCCCCCceEEEeccchh---hccccccCC--ceEEEEcCCCc-----EEEEEeccccEE
Confidence 23334444 45666666665 4789999999854 777776543 44578999995 5666653
Q ss_pred -CCcEEEEeeccCC
Q 013717 412 -DGEIRAWQVSVSC 424 (437)
Q Consensus 412 -dg~i~iw~~~~~~ 424 (437)
|+.++||+.....
T Consensus 380 vdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 380 VDNGIKIWHYTGSL 393 (566)
T ss_pred ecCCeEEEEecCce
Confidence 7889999987653
No 257
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.24 E-value=1.7e-10 Score=105.12 Aligned_cols=278 Identities=14% Similarity=0.169 Sum_probs=184.3
Q ss_pred cceeeccccccccccCCCceeEEecCCCcceeeeecCc--cCCeEEEEee-----CCEEEEEecCeEEEEeCCCCceeee
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGH--KLPIGCIAVH-----HNFLYAASSHEINVYDRTGTTWTSI 132 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h--~~~V~~l~~~-----~~~l~s~~~d~v~vwd~~~~~~~~~ 132 (437)
..+...|+...++.++.-|.+.+ +++....+-.-+.| .-.|-.+.|+ ...+++.+...-.+|++.......+
T Consensus 28 ~a~si~p~grdi~lAsr~gl~i~-dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aI 106 (1081)
T KOG0309|consen 28 NAVSINPSGRDIVLASRQGLYII-DLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAI 106 (1081)
T ss_pred cceeeccccchhhhhhhcCeEEE-eccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCCccce
Confidence 45677888888888888775544 44444444444444 3346667777 3455555555888999876433333
Q ss_pred eccccCCCCcccEEEEEEeCC---eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeee
Q 013717 133 NTFNDNDSSSGSVKSVTFCDG---KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWI 209 (437)
Q Consensus 133 ~~~~~~~~h~~~v~~l~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (437)
.-+ ..+|...|+.+.|.+. -+++++.|-.+..||+++........ .
T Consensus 107 ef~--lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~-----------------------------~ 155 (1081)
T KOG0309|consen 107 EFV--LHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYST-----------------------------S 155 (1081)
T ss_pred EEE--EecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeee-----------------------------e
Confidence 322 2589999999999854 49999999999999998764221111 1
Q ss_pred cCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCc-ceEEEeecccccEEEEEEecCC--eEEEEeCCCeEEEecCCCCc
Q 013717 210 EHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDL-RCLESIKAHEDAVNAVAVSAGG--TVYTGSADRKIRVWAKPFNE 284 (437)
Q Consensus 210 ~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~ 284 (437)
.-......++|+- ..+.+.+..+.|++||.+.+ .++..+++|...|+.++|..-- .+++.+.||+|+.||.....
T Consensus 156 ~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt 235 (1081)
T KOG0309|consen 156 SWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST 235 (1081)
T ss_pred cccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccc
Confidence 1233445667764 45555677788999999876 5677888888899999987643 39999999999999986544
Q ss_pred ccceeeEEeeCccccEEEEEEccCC--CEEEEEeCCCcEEEEECCCCc------cceEEeeeecccccceEEEEeeC---
Q 013717 285 KRHALIATLEKHKSAVNALALSDDG--TVLFSGACDRSILVWDREDSA------NHMVVTGALRGHGKAILCLINVA--- 353 (437)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~~~~i~~~~~~~--- 353 (437)
...+.. .....+|..-.+.|-| .++.---.+..+.+++-+... ......+.+.||...|..+.|..
T Consensus 236 ~e~~~~---vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e 312 (1081)
T KOG0309|consen 236 TESKRT---VTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKE 312 (1081)
T ss_pred ccccee---ccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhccc
Confidence 333222 2245667777777743 333332223355555444321 12235667889999887766531
Q ss_pred ---C------EEEEEeCCCcEEEeeCCC
Q 013717 354 ---G------LLMSGSADRTVRIWQRGS 372 (437)
Q Consensus 354 ---~------~l~~~~~dg~i~iwd~~~ 372 (437)
+ .|+|=+.|..+++|-+.+
T Consensus 313 ~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 313 CDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccCCCCccceeEEEeecCCceEeeeccH
Confidence 1 899999999999998765
No 258
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.23 E-value=2.4e-07 Score=83.30 Aligned_cols=275 Identities=15% Similarity=0.158 Sum_probs=160.9
Q ss_pred CceeEEecCCCcceeee---ecCccCCeEEEEee--CCEEEEEec----C-eEEEEeCCC--CceeeeeccccCCCCccc
Q 013717 77 DETINFSSASHLCINSV---QLGHKLPIGCIAVH--HNFLYAASS----H-EINVYDRTG--TTWTSINTFNDNDSSSGS 144 (437)
Q Consensus 77 dg~i~~~~~~~~~~~~~---~~~h~~~V~~l~~~--~~~l~s~~~----d-~v~vwd~~~--~~~~~~~~~~~~~~h~~~ 144 (437)
.+.|..++.+.....+. ...-......|+++ +++|++... + .|..|++.. +.+..+.... .....
T Consensus 12 ~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~---~~g~~ 88 (345)
T PF10282_consen 12 GGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVP---SGGSS 88 (345)
T ss_dssp STEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEE---ESSSC
T ss_pred CCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeec---cCCCC
Confidence 35677777632222222 22344555667776 888888876 3 888888776 4555555542 23456
Q ss_pred EEEEEEeCCe--EEEEe-cCCeEEEEeCCCC-cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe
Q 013717 145 VKSVTFCDGK--IFTAH-QDCKIRVWQLTPT-KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV 220 (437)
Q Consensus 145 v~~l~~~~~~--l~s~~-~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (437)
...++++++. |+++. .+|.|.++++... ............ ......-........++.+
T Consensus 89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~-----------------g~g~~~~rq~~~h~H~v~~ 151 (345)
T PF10282_consen 89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHE-----------------GSGPNPDRQEGPHPHQVVF 151 (345)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESE-----------------EEESSTTTTSSTCEEEEEE
T ss_pred cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccC-----------------CCCCcccccccccceeEEE
Confidence 6788888665 55554 5899999999874 222211100000 0000000113455778899
Q ss_pred CC--CeEEEEE-CCCcEEEEECCCcc--eE--EEee-cccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceee
Q 013717 221 NN--GLIYSVS-WDKSLKIWRASDLR--CL--ESIK-AHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALI 290 (437)
Q Consensus 221 ~~--~~l~~~~-~dg~i~iwd~~~~~--~~--~~~~-~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~ 290 (437)
+| +++++.. ....|.+|++.... .. ..+. .....-..++|+|+++ +++.-.++.|.+|++.......+.+
T Consensus 152 ~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~ 231 (345)
T PF10282_consen 152 SPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEI 231 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred CCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEE
Confidence 88 6666654 34579999987654 32 2222 3455688999999998 4566678999999887333333333
Q ss_pred EEeeCc------cccEEEEEEccCCCEEEEEeC-CCcEEEEECCCCccceEEeeeecccccceEEEEe--eCCEEEEEe-
Q 013717 291 ATLEKH------KSAVNALALSDDGTVLFSGAC-DRSILVWDREDSANHMVVTGALRGHGKAILCLIN--VAGLLMSGS- 360 (437)
Q Consensus 291 ~~~~~~------~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~- 360 (437)
...... ......|+++|||++|+++.. ++.|.+|++......................+.+ ++++|+++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~ 311 (345)
T PF10282_consen 232 QTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ 311 (345)
T ss_dssp EEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEET
T ss_pred EEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEec
Confidence 333321 125789999999998887664 6789999995432233333333322233444544 666777665
Q ss_pred CCCcEEEeeCC
Q 013717 361 ADRTVRIWQRG 371 (437)
Q Consensus 361 ~dg~i~iwd~~ 371 (437)
.++.|.+|++.
T Consensus 312 ~s~~v~vf~~d 322 (345)
T PF10282_consen 312 DSNTVSVFDID 322 (345)
T ss_dssp TTTEEEEEEEE
T ss_pred CCCeEEEEEEe
Confidence 56789999875
No 259
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.22 E-value=1.2e-10 Score=106.20 Aligned_cols=287 Identities=16% Similarity=0.225 Sum_probs=183.2
Q ss_pred cCCeEEEEee--CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC----e-EEEEecCCeEEEEeCC
Q 013717 98 KLPIGCIAVH--HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG----K-IFTAHQDCKIRVWQLT 170 (437)
Q Consensus 98 ~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~-l~s~~~dg~i~iwd~~ 170 (437)
.+++.++..+ |+-+|.++.-.+.+-|+... ....+-+. .-..-.|-.+.|++. . +++.+ ...-.+|++.
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl~i~dld~p-~~ppr~l~--h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwnlA 99 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGLYIIDLDDP-FTPPRWLH--HITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNLA 99 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCeEEEeccCC-CCCceeee--ccCcchhcceecccCCCCceeEEecC-cchhhhhhhh
Confidence 4556666666 88888888776677777653 11222221 012234666777732 2 44444 3445588886
Q ss_pred CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcc-eEE
Q 013717 171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLR-CLE 246 (437)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~-~~~ 246 (437)
....... ..++-+|...|+++.|++ ..+++++.|-.+..||++... .+.
T Consensus 100 ~ss~~aI---------------------------ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~y 152 (1081)
T KOG0309|consen 100 KSSSNAI---------------------------EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFY 152 (1081)
T ss_pred cCCccce---------------------------EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCccee
Confidence 4432111 112347999999999987 899999999999999998764 444
Q ss_pred EeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEcc-CCCEEEEEeCCCcEEEE
Q 013717 247 SIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSD-DGTVLFSGACDRSILVW 324 (437)
Q Consensus 247 ~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~ 324 (437)
.+..-......++|+-..- +.+.+..+.|.+||++.+. .++..+++|...|+.++|.. ....+.+.+.||+|+.|
T Consensus 153 s~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs---~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw 229 (1081)
T KOG0309|consen 153 STSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS---TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFW 229 (1081)
T ss_pred eeecccccCceeeecccCcchhhhccCCceEEEeccCCC---cceEEecccceeeehHHHhhhhhhhhcccCCCCceeee
Confidence 5544555677889986554 7777888999999988765 46777788889999999876 33478899999999999
Q ss_pred ECCCCccceEEeeeecccccceEE--EEeeCC--EEEEEeC---------CCcEEEeeCCCCCCeeeeeeecCCCCCeeE
Q 013717 325 DREDSANHMVVTGALRGHGKAILC--LINVAG--LLMSGSA---------DRTVRIWQRGSDGRFGCLAVLEGHTKPVKS 391 (437)
Q Consensus 325 d~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~--~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 391 (437)
|............. ...++.. ..+-++ ++.-.-. +.....|+..++. .++.++.||.+.|..
T Consensus 230 ~y~kSt~e~~~~vt---t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~--~pVh~F~GH~D~V~e 304 (1081)
T KOG0309|consen 230 DYSKSTTESKRTVT---TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLN--TPVHTFVGHDDVVLE 304 (1081)
T ss_pred cccccccccceecc---ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCC--cceeeecCcchHHHH
Confidence 98764332221111 1112211 111122 1111111 2223334444433 588999999999988
Q ss_pred EEEEccCC-----CCceEEEEEecCCCcEEEEeeccC
Q 013717 392 LTAVTEEG-----QNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 392 l~~~~~~~-----~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
..|-..+. ......|+|-+.|..+|+|.+...
T Consensus 305 FlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 305 FLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred HhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 77754332 112346999999999999998754
No 260
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=1.9e-08 Score=93.65 Aligned_cols=229 Identities=11% Similarity=0.029 Sum_probs=134.4
Q ss_pred eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecC---CeEEEEeCCCCcccccccccCccccceeeec
Q 013717 118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQD---CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFM 192 (437)
Q Consensus 118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 192 (437)
.|.++|.+++..+.+. .+...+....|+|++ |+..+.+ ..|.+|++.+++......
T Consensus 180 ~l~~~d~~g~~~~~l~------~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~------------- 240 (430)
T PRK00178 180 TLQRSDYDGARAVTLL------QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITN------------- 240 (430)
T ss_pred EEEEECCCCCCceEEe------cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccC-------------
Confidence 5888888875333332 356788999999776 6555433 368899998775332211
Q ss_pred CCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEE-EEECCC--cEEEEECCCcceEEEeecccccEEEEEEecCCe-E
Q 013717 193 LPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIY-SVSWDK--SLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-V 266 (437)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l 266 (437)
..+.+....|+| +.|+ +...+| .|.+||+.+++.. .+..+........|+|||+ +
T Consensus 241 ------------------~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i 301 (430)
T PRK00178 241 ------------------FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTL 301 (430)
T ss_pred ------------------CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEE
Confidence 222334577887 5555 444455 5888899887654 3444555566788999998 6
Q ss_pred EEEeC-CC--eEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC-C--cEEEEECCCCccceEEeeeec
Q 013717 267 YTGSA-DR--KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD-R--SILVWDREDSANHMVVTGALR 340 (437)
Q Consensus 267 ~~~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~ 340 (437)
+..+. +| .|.++|+..+. ...+...........|+|||++|+....+ + .|.+||+.+++... +. .
T Consensus 302 ~f~s~~~g~~~iy~~d~~~g~-----~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt-~-- 372 (430)
T PRK00178 302 YFTSDRGGKPQIYKVNVNGGR-----AERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LT-D-- 372 (430)
T ss_pred EEEECCCCCceEEEEECCCCC-----EEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-cc-C--
Confidence 55543 34 46666664432 11111112233457899999998877653 2 58889988764321 21 1
Q ss_pred ccccceEEEEeeCCEEEEEeC-CC--cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEcc
Q 013717 341 GHGKAILCLINVAGLLMSGSA-DR--TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTE 397 (437)
Q Consensus 341 ~~~~~i~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 397 (437)
.....-..+++++..++..+. +| .|.++++.... ...+..+.+.+...+|+|.
T Consensus 373 ~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~----~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 373 TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRV----RLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc----eEECcCCCCCcCCCccCCC
Confidence 111112356666776555544 33 46666765422 2344445556777777763
No 261
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.19 E-value=7.2e-08 Score=84.76 Aligned_cols=320 Identities=10% Similarity=0.125 Sum_probs=194.2
Q ss_pred eeEEecCCCcceeeeec-CccCCeEEEEee--CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-
Q 013717 79 TINFSSASHLCINSVQL-GHKLPIGCIAVH--HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK- 154 (437)
Q Consensus 79 ~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 154 (437)
.|.++........-..+ .-.-++..+.++ |.+|++.....|.+|+-... ..+..+ -...|..+.|+|++
T Consensus 12 ~i~~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~--~~l~~~-----~~~~V~~~~fSP~~k 84 (561)
T COG5354 12 VISVFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAAGVECWGGPSK--AKLVRF-----RHPDVKYLDFSPNEK 84 (561)
T ss_pred eEEEeecCccccccccccccCcchhheeecCcchheehhhccceEEccccch--hheeee-----ecCCceecccCcccc
Confidence 34433333333334444 477889999999 89998888779999998884 344444 23568889999776
Q ss_pred -EEEEec---------------CCeEEEEeCCCCcccccccccCcc--ccceeeecCCCCeeEEe-eccceeee------
Q 013717 155 -IFTAHQ---------------DCKIRVWQLTPTKHHKLKTTLPTV--NDRLLRFMLPNSYVTVR-RHKKKLWI------ 209 (437)
Q Consensus 155 -l~s~~~---------------dg~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~------ 209 (437)
|.+=+. +..+.+||+.++............ ...+..+...+.+.+.. .....+..
T Consensus 85 YL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~ 164 (561)
T COG5354 85 YLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIE 164 (561)
T ss_pred eeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccc
Confidence 554432 335999999998766555443332 11233333333322211 11111110
Q ss_pred ---c---CCCcEEEEEeCC----CeEEE-----EECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEE----
Q 013717 210 ---E---HGDAVTGLAVNN----GLIYS-----VSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTG---- 269 (437)
Q Consensus 210 ---~---~~~~v~~~~~~~----~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~---- 269 (437)
- ....|....++| ..|+. .+.++.+++|.+..+..+.+-.-.+..=..+.|.+.|. +++-
T Consensus 165 ~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~ 244 (561)
T COG5354 165 EHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTH 244 (561)
T ss_pred cCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEe
Confidence 0 124566777777 23332 35678899999987776655443344445678888887 2221
Q ss_pred -------eCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEE--eCCCcEEEEECCCCccceEEeeeec
Q 013717 270 -------SADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSG--ACDRSILVWDREDSANHMVVTGALR 340 (437)
Q Consensus 270 -------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~ 340 (437)
..+..+.+++++... +.......++|...+|.|.++.+++. -.+..+.++|++.. +...+.
T Consensus 245 ~ksnKsyfgesnLyl~~~~e~~-----i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-----l~~~~P 314 (561)
T COG5354 245 TKSNKSYFGESNLYLLRITERS-----IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-----LRFYFP 314 (561)
T ss_pred eecccceeccceEEEEeecccc-----cceeccccccceeeeecccCCceeEEecccccceeecccccc-----eEEecC
Confidence 123567777765221 22222567899999999988876654 47889999999864 221222
Q ss_pred ccccceEEEEeeCCEEEEEeCC---CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEec------C
Q 013717 341 GHGKAILCLINVAGLLMSGSAD---RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGS------L 411 (437)
Q Consensus 341 ~~~~~i~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~------~ 411 (437)
.....-..+.++..+++.++-| |.+-+||.... +.++..+.+-. .+-+.|+|++. ++.+.- .
T Consensus 315 e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r--f~~~~~~~~~n--~s~~~wspd~q-----F~~~~~ts~k~~~ 385 (561)
T COG5354 315 EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR--FKVAGAFNGLN--TSYCDWSPDGQ-----FYDTDTTSEKLRV 385 (561)
T ss_pred CcccccccccCcccEEEEecCCccccceEEeccCCc--eEEEEEeecCC--ceEeeccCCce-----EEEecCCCccccc
Confidence 2233334455566788877665 67999998863 35665666533 34567999884 454442 3
Q ss_pred CCcEEEEeeccCC
Q 013717 412 DGEIRAWQVSVSC 424 (437)
Q Consensus 412 dg~i~iw~~~~~~ 424 (437)
|..|.||++....
T Consensus 386 Dn~i~l~~v~g~~ 398 (561)
T COG5354 386 DNSIKLWDVYGAK 398 (561)
T ss_pred CcceEEEEecCch
Confidence 7899999998764
No 262
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.18 E-value=1.3e-07 Score=82.43 Aligned_cols=166 Identities=8% Similarity=0.028 Sum_probs=121.5
Q ss_pred CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEe--CCeEEEEecCC-eEEEEeCCCCcccccccccCcc
Q 013717 108 HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC--DGKIFTAHQDC-KIRVWQLTPTKHHKLKTTLPTV 184 (437)
Q Consensus 108 ~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~ 184 (437)
|++++..|.+...|.+...+ - ... -+|.+.|.-..+. ++.++.|..|| .+-++|.++++......
T Consensus 332 Gd~ia~VSRGkaFi~~~~~~--~-~iq----v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~----- 399 (668)
T COG4946 332 GDYIALVSRGKAFIMRPWDG--Y-SIQ----VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK----- 399 (668)
T ss_pred CcEEEEEecCcEEEECCCCC--e-eEE----cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC-----
Confidence 89999999986666665543 1 222 2577788888876 44599999999 89999999886444332
Q ss_pred ccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEec
Q 013717 185 NDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA 262 (437)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~ 262 (437)
.-+.|.++..++ ++++.+.....|.+.|+.+++....-+...+-|+.++|+|
T Consensus 400 --------------------------~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~ 453 (668)
T COG4946 400 --------------------------DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP 453 (668)
T ss_pred --------------------------CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC
Confidence 556889999988 6788888889999999999987666566778899999999
Q ss_pred CCe-EEEEeCCC----eEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe
Q 013717 263 GGT-VYTGSADR----KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA 316 (437)
Q Consensus 263 ~~~-l~~~~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (437)
+++ +|-+.-+| .|+++|+..+. +.......+.=.+-+|.|||++|.--+
T Consensus 454 nsr~iAYafP~gy~tq~Iklydm~~~K-----iy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 454 NSRWIAYAFPEGYYTQSIKLYDMDGGK-----IYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred CceeEEEecCcceeeeeEEEEecCCCe-----EEEecCCcccccCcccCCCCcEEEEEe
Confidence 999 77776665 68899887543 222222233334567888999776543
No 263
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=1.3e-08 Score=94.46 Aligned_cols=228 Identities=13% Similarity=0.037 Sum_probs=129.7
Q ss_pred eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEec-CC--eEEEEeCCCCcccccccccCccccceeeec
Q 013717 118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQ-DC--KIRVWQLTPTKHHKLKTTLPTVNDRLLRFM 192 (437)
Q Consensus 118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 192 (437)
.|.++|.+....+.+. .+...+....|+|++ |+..+. ++ .|.+||+.+++.... ..
T Consensus 199 ~l~i~d~dG~~~~~l~------~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t~------------ 259 (448)
T PRK04792 199 QLMIADYDGYNEQMLL------RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-TS------------ 259 (448)
T ss_pred EEEEEeCCCCCceEee------cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-cC------------
Confidence 5677787664333222 256688899999776 555443 33 588889887653221 11
Q ss_pred CCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEE-EEECCCc--EEEEECCCcceEEEeecccccEEEEEEecCCe-E
Q 013717 193 LPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIY-SVSWDKS--LKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-V 266 (437)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l 266 (437)
.........|+| +.|+ +...+|. |.++|+.+++.. .+..+.......+|+||++ +
T Consensus 260 ------------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I 320 (448)
T PRK04792 260 ------------------FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSL 320 (448)
T ss_pred ------------------CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEE
Confidence 111223567887 5454 4566665 778898877643 3444555667889999998 5
Q ss_pred EEEe-CCCe--EEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC-CC--cEEEEECCCCccceEEeeeec
Q 013717 267 YTGS-ADRK--IRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC-DR--SILVWDREDSANHMVVTGALR 340 (437)
Q Consensus 267 ~~~~-~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~ 340 (437)
+..+ .++. |.++|+..+. ...+..........+|+|||++|+..+. ++ .|.++|+.+++... +. .
T Consensus 321 ~f~s~~~g~~~Iy~~dl~~g~-----~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt---~ 391 (448)
T PRK04792 321 IFTSERGGKPQIYRVNLASGK-----VSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LT---S 391 (448)
T ss_pred EEEECCCCCceEEEEECCCCC-----EEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-cc---C
Confidence 5444 3444 5555554332 1112112222345789999998877655 33 45667877664221 11 1
Q ss_pred ccccceEEEEeeCCEEEEEe-CCCc--EEEeeCCCCCCeeeeeeecCCCCCeeEEEEEc
Q 013717 341 GHGKAILCLINVAGLLMSGS-ADRT--VRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT 396 (437)
Q Consensus 341 ~~~~~i~~~~~~~~~l~~~~-~dg~--i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~ 396 (437)
.....-..+++++..|+..+ .+|. +++++... . ....+..+.+.+...+|+|
T Consensus 392 ~~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G-~---~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 392 TRLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG-R---FKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CCCCCCceECCCCCEEEEEEecCCceEEEEEECCC-C---ceEECcCCCCCcCCCccCC
Confidence 11111225666676555444 4443 66777643 3 3444555566677778877
No 264
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.16 E-value=9.7e-07 Score=74.78 Aligned_cols=276 Identities=11% Similarity=0.149 Sum_probs=167.8
Q ss_pred CceeEEecCCCcceeeee---cCccCCeEEEEee--CCEEEEEec---C-eEEEEeCCC--CceeeeeccccCCCCcccE
Q 013717 77 DETINFSSASHLCINSVQ---LGHKLPIGCIAVH--HNFLYAASS---H-EINVYDRTG--TTWTSINTFNDNDSSSGSV 145 (437)
Q Consensus 77 dg~i~~~~~~~~~~~~~~---~~h~~~V~~l~~~--~~~l~s~~~---d-~v~vwd~~~--~~~~~~~~~~~~~~h~~~v 145 (437)
+.-|..|+++.....+.. ..+.+..+=|+++ +++|.++-. + .|.-|.++. |++..+.... .-..+-
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~---~~g~~p 91 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT---LPGSPP 91 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc---cCCCCC
Confidence 456788888633222222 2788899999999 667777753 2 566666654 5555555442 223344
Q ss_pred EEEEEeCCe--EEEEe-cCCeEEEEeCCCC-cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717 146 KSVTFCDGK--IFTAH-QDCKIRVWQLTPT-KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN 221 (437)
Q Consensus 146 ~~l~~~~~~--l~s~~-~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 221 (437)
+.+++++++ ++++. .-|.|.++-++.. .............. ... -......+....+.
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~-----------------~p~-~rQ~~~h~H~a~~t 153 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGS-----------------GPH-ERQESPHVHSANFT 153 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCC-----------------CCC-ccccCCccceeeeC
Confidence 888888665 55544 4588999998653 32222121110000 000 00011226677788
Q ss_pred C--CeEEEEEC-CCcEEEEECCCcceEEEee---cccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEe
Q 013717 222 N--GLIYSVSW-DKSLKIWRASDLRCLESIK---AHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATL 293 (437)
Q Consensus 222 ~--~~l~~~~~-dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 293 (437)
| +++++.+- --.|.+|++..++....-. .....-..|.|+|+++ .++.-.+++|.+|.........+.++.+
T Consensus 154 P~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i 233 (346)
T COG2706 154 PDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTI 233 (346)
T ss_pred CCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeee
Confidence 8 56666642 2369999999776543221 3455678899999999 4556668999999887654444444433
Q ss_pred eC------ccccEEEEEEccCCCEEEEEeC-CCcEEEEECCCCccceEEeeeeccccc--ceEEEEeeCCEEEEEeCC-C
Q 013717 294 EK------HKSAVNALALSDDGTVLFSGAC-DRSILVWDREDSANHMVVTGALRGHGK--AILCLINVAGLLMSGSAD-R 363 (437)
Q Consensus 294 ~~------~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~l~~~~~d-g 363 (437)
.. .......|..++||++|.++.. ...|.+|.+........+......+.. .-..+..++++|+++..+ .
T Consensus 234 ~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd 313 (346)
T COG2706 234 DTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSD 313 (346)
T ss_pred ccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCC
Confidence 21 2345778999999999998765 347888888765555555544444433 334455556777777664 4
Q ss_pred cEEEeeCCCC
Q 013717 364 TVRIWQRGSD 373 (437)
Q Consensus 364 ~i~iwd~~~~ 373 (437)
.|.+|.....
T Consensus 314 ~i~vf~~d~~ 323 (346)
T COG2706 314 NITVFERDKE 323 (346)
T ss_pred cEEEEEEcCC
Confidence 7999987653
No 265
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.16 E-value=8.4e-10 Score=88.32 Aligned_cols=135 Identities=18% Similarity=0.257 Sum_probs=94.4
Q ss_pred CcEEEEECCCcceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEcc-C
Q 013717 232 KSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSD-D 308 (437)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~ 308 (437)
+..++|+++..+.+..-......|.+++-+|... +++|+.||.+-+||.+... .+...+..|+.+|..+-|+| +
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~---~p~S~l~ahk~~i~eV~FHpk~ 235 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA---MPVSLLKAHKAEIWEVHFHPKN 235 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEccccc---chHHHHHHhhhhhhheeccCCC
Confidence 3456666654433222222334599999998665 8899999999999998553 34556778999999999999 6
Q ss_pred CCEEEEEeCCCcEEEEECCCCcc--------------------ceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEe
Q 013717 309 GTVLFSGACDRSILVWDREDSAN--------------------HMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIW 368 (437)
Q Consensus 309 ~~~l~~~~~dg~i~i~d~~~~~~--------------------~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iw 368 (437)
+..|+++++||.+.-||..+.-. ...+...+......|..+...+..|++|+.-+.|+++
T Consensus 236 p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~ 315 (319)
T KOG4714|consen 236 PEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLT 315 (319)
T ss_pred chheeEecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEe
Confidence 77999999999999999873100 0111111222344567777778899999998888887
Q ss_pred e
Q 013717 369 Q 369 (437)
Q Consensus 369 d 369 (437)
+
T Consensus 316 ~ 316 (319)
T KOG4714|consen 316 R 316 (319)
T ss_pred c
Confidence 5
No 266
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.16 E-value=1.9e-07 Score=85.81 Aligned_cols=300 Identities=10% Similarity=0.055 Sum_probs=170.9
Q ss_pred cccccCCCceeEEecCCCcceeeeec-CccC---------Ce-EEEEeeCCEEEEEecC-eEEEEeCCCCceeeeecccc
Q 013717 70 SLQKLSPDETINFSSASHLCINSVQL-GHKL---------PI-GCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFND 137 (437)
Q Consensus 70 ~~~s~s~dg~i~~~~~~~~~~~~~~~-~h~~---------~V-~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~ 137 (437)
.+...+.+|.+..++.......-..- .... .+ ..++..++.++.++.+ .+..+|.++++..=....
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~-- 148 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKV-- 148 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccC--
Confidence 34445566677666665433332221 1110 11 1234457777778777 999999988643222222
Q ss_pred CCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEE
Q 013717 138 NDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTG 217 (437)
Q Consensus 138 ~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 217 (437)
...........++.++.+..++.+..+|.++++.......... . ....+...++
T Consensus 149 ---~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~--~-------------------~~~~~~~sP~-- 202 (394)
T PRK11138 149 ---AGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVP--S-------------------LTLRGESAPA-- 202 (394)
T ss_pred ---CCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCC--c-------------------ccccCCCCCE--
Confidence 1111122233466788888899999999999876544431100 0 0000011111
Q ss_pred EEeCCCeEEEEECCCcEEEEECCCcceEEEeecccc-------cEEEEEEec---CCeEEEEeCCCeEEEecCCCCcccc
Q 013717 218 LAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHED-------AVNAVAVSA---GGTVYTGSADRKIRVWAKPFNEKRH 287 (437)
Q Consensus 218 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~v~~~~~~~---~~~l~~~~~dg~v~iwd~~~~~~~~ 287 (437)
...+.++.+..+|.+..+|..+++.+........ ....+..+| ++.++.++.+|.+..+|..++...+
T Consensus 203 --v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W 280 (394)
T PRK11138 203 --TAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVW 280 (394)
T ss_pred --EECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEE
Confidence 1235677788899999999999887665431110 011111122 5667778889999999987665333
Q ss_pred eeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEE
Q 013717 288 ALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRI 367 (437)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~i 367 (437)
+. . ......+.. ++..++.++.+|.++.+|..+++..+.... . . .....+....++.|+.++.||.|++
T Consensus 281 ~~----~--~~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~~~~-~-~-~~~~~sp~v~~g~l~v~~~~G~l~~ 349 (394)
T PRK11138 281 KR----E--YGSVNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWSQSD-L-L-HRLLTAPVLYNGYLVVGDSEGYLHW 349 (394)
T ss_pred ee----c--CCCccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEcccc-c-C-CCcccCCEEECCEEEEEeCCCEEEE
Confidence 21 1 111112222 456788888999999999998865443211 1 1 1112223345778899999999999
Q ss_pred eeCCCCCCeeeeeeecCCCCCeeE-EEEEccCCCCceEEEEEecCCCcEEEEee
Q 013717 368 WQRGSDGRFGCLAVLEGHTKPVKS-LTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420 (437)
Q Consensus 368 wd~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 420 (437)
.|..+++ .+...+-....+.+ ..+ .++ .|+.++.||.|+.+++
T Consensus 350 ld~~tG~---~~~~~~~~~~~~~s~P~~-~~~------~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 350 INREDGR---FVAQQKVDSSGFLSEPVV-ADD------KLLIQARDGTVYAITR 393 (394)
T ss_pred EECCCCC---EEEEEEcCCCcceeCCEE-ECC------EEEEEeCCceEEEEeC
Confidence 9999887 44444332223322 122 223 5888899999988764
No 267
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.16 E-value=4.7e-07 Score=76.67 Aligned_cols=267 Identities=9% Similarity=0.170 Sum_probs=167.0
Q ss_pred eEEEEeCCCC--ceeeeeccccCCCCcccEEEEEEeCCe--EEEEec---CCeEEEEeCCC--CcccccccccCccccce
Q 013717 118 EINVYDRTGT--TWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQ---DCKIRVWQLTP--TKHHKLKTTLPTVNDRL 188 (437)
Q Consensus 118 ~v~vwd~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~---dg~i~iwd~~~--~~~~~~~~~~~~~~~~~ 188 (437)
-|.+|++.+. +...... -.+.+.++-|+|+++. |.++-. +|.|..|.++. ++....-...
T Consensus 17 gI~v~~ld~~~g~l~~~~~----v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~------- 85 (346)
T COG2706 17 GIYVFNLDTKTGELSLLQL----VAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT------- 85 (346)
T ss_pred ceEEEEEeCcccccchhhh----ccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc-------
Confidence 8999998853 2222222 3577889999999776 766644 57788887775 3322111111
Q ss_pred eeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE-CCCcEEEEECCC-cceE---EEeeccccc-------
Q 013717 189 LRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS-WDKSLKIWRASD-LRCL---ESIKAHEDA------- 254 (437)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~-~~~~---~~~~~~~~~------- 254 (437)
....+-+-+++++ ++++++. ..|.|.++-++. |... ..+ .|.+.
T Consensus 86 ---------------------~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~-~h~g~~p~~rQ~ 143 (346)
T COG2706 86 ---------------------LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVV-KHTGSGPHERQE 143 (346)
T ss_pred ---------------------cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeee-ecCCCCCCcccc
Confidence 1222336777777 5777665 468899998865 3322 222 24443
Q ss_pred ---EEEEEEecCCe-EEEEe-CCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC-CCcEEEEECCC
Q 013717 255 ---VNAVAVSAGGT-VYTGS-ADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC-DRSILVWDRED 328 (437)
Q Consensus 255 ---v~~~~~~~~~~-l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~ 328 (437)
+....+.|+++ +++.. .--.|.+|++..+.........+ ......+.|.|+|++++..+.++ +++|.+|....
T Consensus 144 ~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 144 SPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred CCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence 88899999998 44433 24578999987444332222233 35567899999999998877665 89999999987
Q ss_pred CccceEEeeee-------ccc-ccceEEEEeeCCEEEEEeC-CCcEEEeeCCCCC-CeeeeeeecCCCCCeeEEEEEccC
Q 013717 329 SANHMVVTGAL-------RGH-GKAILCLINVAGLLMSGSA-DRTVRIWQRGSDG-RFGCLAVLEGHTKPVKSLTAVTEE 398 (437)
Q Consensus 329 ~~~~~~~~~~~-------~~~-~~~i~~~~~~~~~l~~~~~-dg~i~iwd~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~ 398 (437)
........+.+ .+. ...-..+..+|.+|.++.. ...|-+|.+.... ....+.....+...-+...+.+.+
T Consensus 223 ~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g 302 (346)
T COG2706 223 AVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSG 302 (346)
T ss_pred CCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCC
Confidence 43333222221 111 2223555666777777654 3478888887543 233444444555567888899888
Q ss_pred CCCceEEEEEecCC-CcEEEEeeccC
Q 013717 399 GQNGVVSVFSGSLD-GEIRAWQVSVS 423 (437)
Q Consensus 399 ~~~~~~~l~s~~~d-g~i~iw~~~~~ 423 (437)
. +|+++..| ..|.+|.++..
T Consensus 303 ~-----~Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 303 R-----FLIAANQKSDNITVFERDKE 323 (346)
T ss_pred C-----EEEEEccCCCcEEEEEEcCC
Confidence 5 56666654 57999987643
No 268
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.15 E-value=1.6e-08 Score=81.54 Aligned_cols=232 Identities=10% Similarity=-0.017 Sum_probs=149.7
Q ss_pred eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE---EEEeCCCeEEEEEC
Q 013717 154 KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT---GLAVNNGLIYSVSW 230 (437)
Q Consensus 154 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~~~~~~l~~~~~ 230 (437)
.|+.|+.-|.+.+|...+.+....+.. .|...|+ ..+-....+..++.
T Consensus 86 ~la~gG~~g~fd~~~~~tn~~h~~~cd-----------------------------~snn~v~~~~r~cd~~~~~~i~sn 136 (344)
T KOG4532|consen 86 TLADGGASGQFDLFACNTNDGHLYQCD-----------------------------VSNNDVTLVKRYCDLKFPLNIASN 136 (344)
T ss_pred EEEeccccceeeeecccCcccceeeec-----------------------------ccccchhhhhhhcccccceeeccC
Confidence 488999999999999987653322211 1222221 12222245667788
Q ss_pred CCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeE-EeeCccccEEEEEEccC
Q 013717 231 DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIA-TLEKHKSAVNALALSDD 308 (437)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~ 308 (437)
|.++++.++.-+..........-.+.+++++++++ +++.+....|-.|.++.... ..+. ........-.+..|+..
T Consensus 137 dht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se--y~~~~~~a~t~D~gF~~S~s~~ 214 (344)
T KOG4532|consen 137 DHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE--YIENIYEAPTSDHGFYNSFSEN 214 (344)
T ss_pred CcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccc--eeeeeEecccCCCceeeeeccC
Confidence 88888888765543333222223488999999999 88888899999998864432 2222 23334455678899999
Q ss_pred CCEEEEEeCCCcEEEEECCCCccceEEe-eeecccccceEEEEeeCC----EEEEEeCCCcEEEeeCCCCCCeeeeeeec
Q 013717 309 GTVLFSGACDRSILVWDREDSANHMVVT-GALRGHGKAILCLINVAG----LLMSGSADRTVRIWQRGSDGRFGCLAVLE 383 (437)
Q Consensus 309 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~----~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 383 (437)
...+|++..||++.|||++....+.... .....|.+.+..+.|+.. +|+..-.-+.+.+-|+++....+.+....
T Consensus 215 ~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~ 294 (344)
T KOG4532|consen 215 DLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPD 294 (344)
T ss_pred cceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCc
Confidence 9999999999999999998765444332 223457888888888732 66666666789999999877544443322
Q ss_pred ----CCC-CCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717 384 ----GHT-KPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 384 ----~h~-~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
.|. ..|..-.|+.++.. +....++ .+.-|++..
T Consensus 295 d~~~~~~tq~ifgt~f~~~n~s-----~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 295 DVERKHNTQHIFGTNFNNENES-----NDVKNEL-QGAEYNILS 332 (344)
T ss_pred cccccccccccccccccCCCcc-----cccccch-hhheeeccc
Confidence 233 34777777776653 3344333 345555543
No 269
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.14 E-value=4.3e-08 Score=91.16 Aligned_cols=191 Identities=13% Similarity=0.058 Sum_probs=116.2
Q ss_pred CCCcEEEEEeCC--CeEEEEECC---CcEEEEECCCcceEEEeecccccEEEEEEecCCe-EE-EEeCCC--eEEEecCC
Q 013717 211 HGDAVTGLAVNN--GLIYSVSWD---KSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VY-TGSADR--KIRVWAKP 281 (437)
Q Consensus 211 ~~~~v~~~~~~~--~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~dg--~v~iwd~~ 281 (437)
+...+....|+| ++++.+..+ ..|++||+.+++.... ..+...+.+++|+||++ |+ +.+.++ .|.+||+.
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~-~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~ 266 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV-ASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLD 266 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe-ecCCCCccceEECCCCCEEEEEECCCCCccEEEEECC
Confidence 555677888888 677766543 4799999988865433 33556677899999998 55 444444 58888876
Q ss_pred CCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC-CC--cEEEEECCCCccceEEeeeecccccceE--EEEeeCCEE
Q 013717 282 FNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC-DR--SILVWDREDSANHMVVTGALRGHGKAIL--CLINVAGLL 356 (437)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~l 356 (437)
... ...+..+........|+|||++|+..+. ++ .|+++|+.+++.. .+ ..+..... .+..++++|
T Consensus 267 ~~~-----~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l----~~~~~~~~~~~~spdg~~i 336 (417)
T TIGR02800 267 GKQ-----LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RL----TFRGGYNASPSWSPDGDLI 336 (417)
T ss_pred CCC-----EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Ee----ecCCCCccCeEECCCCCEE
Confidence 432 2233334444556789999998876654 33 5888888765421 11 11222333 444556677
Q ss_pred EEEeCCC---cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCC-C--cEEEEeecc
Q 013717 357 MSGSADR---TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLD-G--EIRAWQVSV 422 (437)
Q Consensus 357 ~~~~~dg---~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d-g--~i~iw~~~~ 422 (437)
+.++.++ .|.+||+.++. ...+... .......|+|++. +|+..+.+ + .+++.+.+.
T Consensus 337 ~~~~~~~~~~~i~~~d~~~~~----~~~l~~~-~~~~~p~~spdg~-----~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 337 AFVHREGGGFNIAVMDLDGGG----ERVLTDT-GLDESPSFAPNGR-----MILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred EEEEccCCceEEEEEeCCCCC----eEEccCC-CCCCCceECCCCC-----EEEEEEeCCCcEEEEEEECCC
Confidence 7777765 78889988744 2222222 2334567999885 34444443 3 345555443
No 270
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=2.3e-10 Score=101.01 Aligned_cols=246 Identities=14% Similarity=0.210 Sum_probs=155.6
Q ss_pred cCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCc
Q 013717 137 DNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDA 214 (437)
Q Consensus 137 ~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (437)
.+.+|+..|..++-.++. +++++.|.+|++|.++......... ...-.+..|..+
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~ts-----------------------aCQfTY~aHkk~ 786 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTS-----------------------ACQFTYQAHKKP 786 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccc-----------------------eeeeEhhhccCc
Confidence 347899999999876443 9999999999999987542110000 011233569999
Q ss_pred EEEEEeCCCeEEEEECCCcEEEEECCCcceEEEee--cccccEEEEEEecC--Ce-EE-EEeCCCeEEEecCCCCcccce
Q 013717 215 VTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIK--AHEDAVNAVAVSAG--GT-VY-TGSADRKIRVWAKPFNEKRHA 288 (437)
Q Consensus 215 v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~--~~-l~-~~~~dg~v~iwd~~~~~~~~~ 288 (437)
|.++.|-...-..++.||-|++||.--++.+..+. ...+.+..+..-++ .. ++ -++...+|+++|.+...-..+
T Consensus 787 i~~igfL~~lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E 866 (1034)
T KOG4190|consen 787 IHDIGFLADLRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCE 866 (1034)
T ss_pred ccceeeeeccceeeeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceee
Confidence 99999987444455668999999987777665443 12233333443333 33 33 347789999999875443222
Q ss_pred eeE-EeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEE-eeCCEEEEEeCCCcEE
Q 013717 289 LIA-TLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLI-NVAGLLMSGSADRTVR 366 (437)
Q Consensus 289 ~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~l~~~~~dg~i~ 366 (437)
... .-.+.+..+.+++..+.|+.++++-.+|.|.+.|.++++ .+..++........++ ++.+.|+....|.++.
T Consensus 867 ~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~----vINswrpmecdllqlaapsdq~L~~saldHsla 942 (1034)
T KOG4190|consen 867 LKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK----VINSWRPMECDLLQLAAPSDQALAQSALDHSLA 942 (1034)
T ss_pred EEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc----eeccCCcccchhhhhcCchhHHHHhhcccceeE
Confidence 111 112345678999999999999999999999999999886 4444444444444444 4455788888888888
Q ss_pred E-eeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEe
Q 013717 367 I-WQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ 419 (437)
Q Consensus 367 i-wd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~ 419 (437)
+ |....+- ...+.+....+..-+ ..-++ -|+++-....+.+|.
T Consensus 943 VnWhaldgi---mh~q~kpppepahfl--qsvgp-----SLV~a~~Gn~lgVYa 986 (1034)
T KOG4190|consen 943 VNWHALDGI---MHLQDKPPPEPAHFL--QSVGP-----SLVTAQNGNILGVYA 986 (1034)
T ss_pred eeehhcCCe---eeeccCCCCcchhhh--hccCc-----eeEEeccCcEEEEEe
Confidence 8 8766543 222222222221111 11122 377776666777774
No 271
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.13 E-value=7.5e-09 Score=95.26 Aligned_cols=285 Identities=12% Similarity=0.101 Sum_probs=187.8
Q ss_pred cCCeEEEEee-CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC-----------e---EEEEecCC
Q 013717 98 KLPIGCIAVH-HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG-----------K---IFTAHQDC 162 (437)
Q Consensus 98 ~~~V~~l~~~-~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----------~---l~s~~~dg 162 (437)
...-.++.|+ +.++|-|+...|.+-|..+ .+.+..+ +-|...|+.+.|.|- . |+++...|
T Consensus 15 ~sN~~A~Dw~~~GLiAygshslV~VVDs~s--~q~iqsi---e~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 15 RSNRNAADWSPSGLIAYGSHSLVSVVDSRS--LQLIQSI---ELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred cccccccccCccceEEEecCceEEEEehhh--hhhhhcc---ccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 3345678888 7888888888888889877 5555555 669999999999731 1 67778889
Q ss_pred eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC------CeEEEEECCCcEEE
Q 013717 163 KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN------GLIYSVSWDKSLKI 236 (437)
Q Consensus 163 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~l~~~~~dg~i~i 236 (437)
.|.+||...+.....+. .|..++..++|-+ ..|++.....+|.+
T Consensus 90 rIil~d~~~~s~~~~l~------------------------------~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvL 139 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLS------------------------------HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVL 139 (1062)
T ss_pred cEEEEEehhhhhhhhhc------------------------------CCCcchhheeeeeccCcchheeEEecCCcEEEE
Confidence 99999998775444333 4778888888854 57777788899999
Q ss_pred EECCCcceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcc---cceeeEEeeCccc-------------
Q 013717 237 WRASDLRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEK---RHALIATLEKHKS------------- 298 (437)
Q Consensus 237 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~~------------- 298 (437)
|+..+|+.............|+.+.|-.. +..-+..|.+.+-+.-...+ ..+..+.-..|..
T Consensus 140 wntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns 219 (1062)
T KOG1912|consen 140 WNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNS 219 (1062)
T ss_pred EEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhcccc
Confidence 99999999988876667788899998553 77777778877776532221 1122222112211
Q ss_pred ---c---------EEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCc
Q 013717 299 ---A---------VNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRT 364 (437)
Q Consensus 299 ---~---------i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~ 364 (437)
. ...++|+|.-+.++-......+.++|++-....... .+......+..+-++++ .|++...||.
T Consensus 220 ~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vv--pier~~akfv~vlP~~~rd~LfclH~nG~ 297 (1062)
T KOG1912|consen 220 TTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVV--PIERGGAKFVDVLPDPRRDALFCLHSNGR 297 (1062)
T ss_pred ccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEE--EeccCCcceeEeccCCCcceEEEEecCCe
Confidence 0 123567886555555556778999999765433322 23333445666666655 9999999999
Q ss_pred EEEeeCCCCC----------------CeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 365 VRIWQRGSDG----------------RFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 365 i~iwd~~~~~----------------~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
+.||-.+... +..++..++ ...+...+.+|..+. .++.--.+|.+.+|.+..+..
T Consensus 298 ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~--~~rp~~~~~cPs~~s----a~avl~s~g~~~~w~l~~~ri 368 (1062)
T KOG1912|consen 298 LTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPME--EFRPVIGASCPSTPS----ALAVLYSSGDSTFWQLSNGRI 368 (1062)
T ss_pred EEEEEeeccCccccccchhhccccccceEEEeech--hcccceeecCCCChh----hhhhhhhcchhHHHhhhcCCc
Confidence 9999766521 112222222 122333444554332 344445688999999997653
No 272
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.12 E-value=4.2e-08 Score=83.65 Aligned_cols=226 Identities=16% Similarity=0.147 Sum_probs=135.3
Q ss_pred CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECC
Q 013717 161 DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRAS 240 (437)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~ 240 (437)
+|+|..||..+++.......-+ .....+.......+.+++++.++.|..||..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~---------------------------~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~ 54 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP---------------------------GIGGPVATAVPDGGRVYVASGDGNLYALDAK 54 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS---------------------------SCSSEEETEEEETTEEEEEETTSEEEEEETT
T ss_pred CCEEEEEECCCCCEEEEEECCC---------------------------CCCCccceEEEeCCEEEEEcCCCEEEEEECC
Confidence 6889999998887655443110 0122222222255788888999999999999
Q ss_pred CcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCc
Q 013717 241 DLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRS 320 (437)
Q Consensus 241 ~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 320 (437)
+|+.+..... ...+.......++.+++++.++.|..+|..++...++...................++..++++..++.
T Consensus 55 tG~~~W~~~~-~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 133 (238)
T PF13360_consen 55 TGKVLWRFDL-PGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGK 133 (238)
T ss_dssp TSEEEEEEEC-SSCGGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSE
T ss_pred CCCEEEEeec-cccccceeeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCc
Confidence 9999888764 222222124446678888889999999977766443321111001111122222223778888888999
Q ss_pred EEEEECCCCccceEEeeeecccccc-------eEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEE
Q 013717 321 ILVWDREDSANHMVVTGALRGHGKA-------ILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLT 393 (437)
Q Consensus 321 i~i~d~~~~~~~~~~~~~~~~~~~~-------i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~ 393 (437)
|..+|+++++...........-... ...+...++.++.++.++.+.-+|+.+++ .+.... ...+..+
T Consensus 134 l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~---~~w~~~--~~~~~~~- 207 (238)
T PF13360_consen 134 LVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLATGE---KLWSKP--ISGIYSL- 207 (238)
T ss_dssp EEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETTTTE---EEEEEC--SS-ECEC-
T ss_pred EEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECCCCC---EEEEec--CCCccCC-
Confidence 9999999988655543311110111 13334445578888888864334999876 222222 2223332
Q ss_pred EEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 394 AVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 394 ~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
....++ .|+.++.++.|..||+.+++.
T Consensus 208 ~~~~~~-----~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 208 PSVDGG-----TLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp EECCCT-----EEEEEETTTEEEEEETTTTEE
T ss_pred ceeeCC-----EEEEEeCCCEEEEEECCCCCE
Confidence 233333 577677999999999999864
No 273
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.12 E-value=2.4e-07 Score=92.58 Aligned_cols=307 Identities=9% Similarity=0.080 Sum_probs=176.1
Q ss_pred cCCeEEEEee--CCEEEEEecC-eEEEE----eCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEe
Q 013717 98 KLPIGCIAVH--HNFLYAASSH-EINVY----DRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQ 168 (437)
Q Consensus 98 ~~~V~~l~~~--~~~l~s~~~d-~v~vw----d~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd 168 (437)
.+.|.++.|- .+.++.+..+ .|.+. +......+.+.. -...|.+++|+||. |+.++.++++.+..
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~------vd~GI~a~~WSPD~Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS------VDSGILAASWSPDEELLALVTGEGNLLLMT 148 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE------EcCcEEEEEECCCcCEEEEEeCCCEEEEEe
Confidence 4678888886 5556666655 77777 666655555554 46799999999987 77777788888764
Q ss_pred CCCCcccccccccCc--cccceeeecCCCCeeEEe------------e-----ccceeeecCCCcEEEEEeCC--CeEEE
Q 013717 169 LTPTKHHKLKTTLPT--VNDRLLRFMLPNSYVTVR------------R-----HKKKLWIEHGDAVTGLAVNN--GLIYS 227 (437)
Q Consensus 169 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~------------~-----~~~~~~~~~~~~v~~~~~~~--~~l~~ 227 (437)
.+ .+.+......+. ............+.-... . .....+. ....-..++|.+ .++|+
T Consensus 149 ~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAV 226 (928)
T PF04762_consen 149 RD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAV 226 (928)
T ss_pred cc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEE
Confidence 32 211111110000 000000000000000000 0 0001112 444556788877 77777
Q ss_pred EEC---C---CcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeC----CCeEEEecCCCCcccceeeEEeeCcc
Q 013717 228 VSW---D---KSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSA----DRKIRVWAKPFNEKRHALIATLEKHK 297 (437)
Q Consensus 228 ~~~---d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~ 297 (437)
.+- . ..++||+-+ |+...+-..-.+--.+++|-|.|.++++.. ...|.+|.-+ +.+.++....+....
T Consensus 227 ss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l~~~~~~ 304 (928)
T PF04762_consen 227 SSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTLRFDPEE 304 (928)
T ss_pred EEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEecCCCCCC
Confidence 664 2 579999954 665554444444456789999999554443 3567777543 222222222233456
Q ss_pred ccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecc-cccceEEEEeeCC---EEEEEeCCCcEEEeeC---
Q 013717 298 SAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRG-HGKAILCLINVAG---LLMSGSADRTVRIWQR--- 370 (437)
Q Consensus 298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~---~l~~~~~dg~i~iwd~--- 370 (437)
..|..+.|++|+..|+....|. |.+|-..+.. +.+++.+.- ....+..+.|++. .|...+.+|.+..++.
T Consensus 305 ~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH--WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~ 381 (928)
T PF04762_consen 305 EKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH--WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWD 381 (928)
T ss_pred ceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE--EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEE
Confidence 7899999999999999987665 9999987643 233333332 1223344777754 6666666666655432
Q ss_pred -CCCC-----------------------------CeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEee
Q 013717 371 -GSDG-----------------------------RFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420 (437)
Q Consensus 371 -~~~~-----------------------------~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 420 (437)
..+. ++.+...+. -..+|.+++|+++.. .++.-..||.|.+|..
T Consensus 382 v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~~-----~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 382 VSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSNS-----RFAVLTSDGSLSIYEW 455 (928)
T ss_pred EEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCCC-----eEEEEECCCCEEEEEe
Confidence 2110 000111121 346899999999875 4888889999999996
Q ss_pred ccC
Q 013717 421 SVS 423 (437)
Q Consensus 421 ~~~ 423 (437)
...
T Consensus 456 ~~~ 458 (928)
T PF04762_consen 456 DLK 458 (928)
T ss_pred cCC
Confidence 654
No 274
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.10 E-value=2.7e-07 Score=84.79 Aligned_cols=272 Identities=11% Similarity=0.058 Sum_probs=158.9
Q ss_pred eeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCC-C----cccE-EEEEEeCCeEEEEecCCeEEEEeCCCCcccccc
Q 013717 106 VHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDS-S----SGSV-KSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLK 178 (437)
Q Consensus 106 ~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~-h----~~~v-~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 178 (437)
+.++.++.++.+ .+.-+|.++++..=...+....+ + ...+ ..+...++.++.++.+|.+..+|.++++.....
T Consensus 67 v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 67 VAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQT 146 (394)
T ss_pred EECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccc
Confidence 346666777666 88888887764322222211000 0 0011 224455777888889999999999999865544
Q ss_pred cccCccccceeeecCCCCeeEEeeccceeeecCCCcEE-EEEeCCCeEEEEECCCcEEEEECCCcceEEEeecccccE--
Q 013717 179 TTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT-GLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAV-- 255 (437)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v-- 255 (437)
... ..+. .-.+..+.++.+..+|.|..+|.++|+.+.........+
T Consensus 147 ~~~-------------------------------~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~ 195 (394)
T PRK11138 147 KVA-------------------------------GEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTL 195 (394)
T ss_pred cCC-------------------------------CceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccc
Confidence 311 1111 112224677788889999999999999988775321111
Q ss_pred ---EEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccc---cEEEEEEcc--CCCEEEEEeCCCcEEEEECC
Q 013717 256 ---NAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKS---AVNALALSD--DGTVLFSGACDRSILVWDRE 327 (437)
Q Consensus 256 ---~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~---~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~ 327 (437)
.+-... ++.++.++.+|.+..+|..++...++.......... ....+..+| .+..++.++.+|.++.+|..
T Consensus 196 ~~~~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~ 274 (394)
T PRK11138 196 RGESAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR 274 (394)
T ss_pred cCCCCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence 111111 455777888999999888766544332110000000 011111222 24567777889999999999
Q ss_pred CCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCC-CCCeeEEEEEccCCCCceEEE
Q 013717 328 DSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGH-TKPVKSLTAVTEEGQNGVVSV 406 (437)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~l 406 (437)
+++..+... +. ....+...++.|+.++.+|.+..+|..+++ .+.....- .....+.... ++ +|
T Consensus 275 tG~~~W~~~--~~----~~~~~~~~~~~vy~~~~~g~l~ald~~tG~---~~W~~~~~~~~~~~sp~v~-~g------~l 338 (394)
T PRK11138 275 SGQIVWKRE--YG----SVNDFAVDGGRIYLVDQNDRVYALDTRGGV---ELWSQSDLLHRLLTAPVLY-NG------YL 338 (394)
T ss_pred CCCEEEeec--CC----CccCcEEECCEEEEEcCCCeEEEEECCCCc---EEEcccccCCCcccCCEEE-CC------EE
Confidence 987554432 11 112344567788888999999999999876 22221110 1112222222 22 67
Q ss_pred EEecCCCcEEEEeeccCCC
Q 013717 407 FSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 407 ~s~~~dg~i~iw~~~~~~~ 425 (437)
+.++.||.|...|..+++.
T Consensus 339 ~v~~~~G~l~~ld~~tG~~ 357 (394)
T PRK11138 339 VVGDSEGYLHWINREDGRF 357 (394)
T ss_pred EEEeCCCEEEEEECCCCCE
Confidence 8888999999988887764
No 275
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.10 E-value=2.7e-08 Score=80.28 Aligned_cols=195 Identities=9% Similarity=-0.059 Sum_probs=128.1
Q ss_pred CeEEEEECCCcEEEEECCCcceEEEe-ecccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCcccc
Q 013717 223 GLIYSVSWDKSLKIWRASDLRCLESI-KAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSA 299 (437)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 299 (437)
.+|+.|+..|...+|...+.+....+ ..+...|+-+.=.-+.. +..++.|.++++.++..+...... ....-.
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~----h~~~~~ 160 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV----HNQNLT 160 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee----eccccc
Confidence 78999999999999999876543333 23333333222112333 888899999999987654322111 111123
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeCCCcEEEeeCCCCCCee
Q 013717 300 VNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSADRTVRIWQRGSDGRFG 377 (437)
Q Consensus 300 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~ 377 (437)
+.++.+++|++++++.+....|..|.+.......... ........-.+.+|+ ...+|++..||++.|||++......
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~-~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm 239 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI-YEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM 239 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee-EecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence 7899999999999999999999999998754433221 122222233444555 4499999999999999998755211
Q ss_pred --eeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 378 --CLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 378 --~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
.-.+-..|.+.+..+.|++.+.- .+|+-.-.-+.+.+-|++....
T Consensus 240 ~~~sstrp~hnGa~R~c~Fsl~g~l---DLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 240 AEISSTRPHHNGAFRVCRFSLYGLL---DLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred hhhcccCCCCCCceEEEEecCCCcc---eEEEEecCcceEEEEEcccCce
Confidence 11223358899999999986543 2444444456888888887754
No 276
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.10 E-value=7.5e-07 Score=78.27 Aligned_cols=272 Identities=8% Similarity=0.018 Sum_probs=150.1
Q ss_pred CeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe---EEEEe---------cCCeEEEEeCCCCcccccccccCcc
Q 013717 117 HEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK---IFTAH---------QDCKIRVWQLTPTKHHKLKTTLPTV 184 (437)
Q Consensus 117 d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~ 184 (437)
+.|.+.|..+. +.+..+.. +... ..+ +++++ .++.+ .+..|.+||..+.+....+..-+..
T Consensus 27 ~~v~ViD~~~~--~v~g~i~~--G~~P--~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p 99 (352)
T TIGR02658 27 TQVYTIDGEAG--RVLGMTDG--GFLP--NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGP 99 (352)
T ss_pred ceEEEEECCCC--EEEEEEEc--cCCC--cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCc
Confidence 48899999884 44444421 1111 223 77664 44445 5889999999998766554421100
Q ss_pred ccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEE-C-CCcEEEEECCCcceEEEeecccccEEEEEE
Q 013717 185 NDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVS-W-DKSLKIWRASDLRCLESIKAHEDAVNAVAV 260 (437)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~ 260 (437)
. . .....-..+++++ +++++.. . +..|.+.|+.+++.+.++.-. +...-...
T Consensus 100 ~---------------------~--~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-~~~~vy~t 155 (352)
T TIGR02658 100 R---------------------F--LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-DCYHIFPT 155 (352)
T ss_pred h---------------------h--hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-CCcEEEEe
Confidence 0 0 0112223556666 6777665 3 789999999999999888642 21222222
Q ss_pred ecCCeEEEEeCCCeEEEecCCCCccccee-eEEeeCccccEE-EEEEcc-CCCEEEEEeCCCcEEEEECCCCccceEEe-
Q 013717 261 SAGGTVYTGSADRKIRVWAKPFNEKRHAL-IATLEKHKSAVN-ALALSD-DGTVLFSGACDRSILVWDREDSANHMVVT- 336 (437)
Q Consensus 261 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~i~-~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~- 336 (437)
+ +..+.+-+.||......+......... ...+.....++. .-.|.+ +|+++++..+ |.|++.|+..........
T Consensus 156 ~-e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~ 233 (352)
T TIGR02658 156 A-NDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAI 233 (352)
T ss_pred c-CCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceeccee
Confidence 2 222334445665555444322211100 111111000000 004455 8888888776 999999975432211111
Q ss_pred ee---------ecccccceEEEEeeCCEEEEEe----------CCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEcc
Q 013717 337 GA---------LRGHGKAILCLINVAGLLMSGS----------ADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTE 397 (437)
Q Consensus 337 ~~---------~~~~~~~i~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 397 (437)
.. +........++..+++.+++.. ..+.|.++|..+.+ .+..+.- ...+..|+++|+
T Consensus 234 ~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k---vi~~i~v-G~~~~~iavS~D 309 (352)
T TIGR02658 234 EAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK---RLRKIEL-GHEIDSINVSQD 309 (352)
T ss_pred eeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe---EEEEEeC-CCceeeEEECCC
Confidence 10 1111112244444556555532 12579999999876 5555442 347899999999
Q ss_pred CCCCceEEEEEecCCCcEEEEeeccCCCCCC
Q 013717 398 EGQNGVVSVFSGSLDGEIRAWQVSVSCPNSS 428 (437)
Q Consensus 398 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 428 (437)
+.. .++++...++.|.+.|..+.+....
T Consensus 310 gkp---~lyvtn~~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 310 AKP---LLYALSTGDKTLYIFDAETGKELSS 337 (352)
T ss_pred CCe---EEEEeCCCCCcEEEEECcCCeEEee
Confidence 852 2444555789999999998875443
No 277
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=7.5e-08 Score=88.17 Aligned_cols=281 Identities=13% Similarity=0.114 Sum_probs=180.5
Q ss_pred CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCce----e---eeecc---ccCCCCcccEEEEEEeCCe--EEEEec
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTW----T---SINTF---NDNDSSSGSVKSVTFCDGK--IFTAHQ 160 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~----~---~~~~~---~~~~~h~~~v~~l~~~~~~--l~s~~~ 160 (437)
..+....|++|+ ..|+|.|+.| .++|..+.+... + ....+ ..+++|.+.|.-+.|+.+. |-+...
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 456678999999 8999999999 999988865311 1 11111 2337999999999999654 889999
Q ss_pred CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEE
Q 013717 161 DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWR 238 (437)
Q Consensus 161 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd 238 (437)
+|-|.+|-+-.+........ ....+-|.+++|+- ..++....||.|.+=.
T Consensus 92 ~GlIiVWmlykgsW~EEMiN----------------------------nRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs 143 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMIN----------------------------NRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS 143 (1189)
T ss_pred CceEEEEeeecccHHHHHhh----------------------------CcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence 99999999887754333221 12456688888876 7888888899888776
Q ss_pred CCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccc---eee----EEeeCccccEEEEEEc----
Q 013717 239 ASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRH---ALI----ATLEKHKSAVNALALS---- 306 (437)
Q Consensus 239 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~---~~~----~~~~~~~~~i~~~~~~---- 306 (437)
++..+ +..-.-.......+.|++|.+ ++.+-.+|.+++||...+.... .+. ..+......|..+.|.
T Consensus 144 vdGNR-IwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~ 222 (1189)
T KOG2041|consen 144 VDGNR-IWGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPY 222 (1189)
T ss_pred eccce-ecchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCcc
Confidence 65433 221111122345788999998 7788889999999876433211 111 1111122235555553
Q ss_pred ----cCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee--CCEEEEEeCCC---------cEEEeeCC
Q 013717 307 ----DDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV--AGLLMSGSADR---------TVRIWQRG 371 (437)
Q Consensus 307 ----~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~l~~~~~dg---------~i~iwd~~ 371 (437)
||...|+.+..+|.+.|-.-.....+..+. ..-.+....|+ |.+|++++.+. .|.+|..-
T Consensus 223 ~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d-----tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~ 297 (1189)
T KOG2041|consen 223 QPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD-----TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY 297 (1189)
T ss_pred ccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe-----cccEeecceecCCCcEEEEccCcccccCccccceEEEeccc
Confidence 477789999999999887655443333222 12445555555 44888777643 46666543
Q ss_pred CCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEee
Q 013717 372 SDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420 (437)
Q Consensus 372 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 420 (437)
. ..+.+++-....|++++|-..+ +-++-..|+.|.+=++
T Consensus 298 G----~i~gtlkvpg~~It~lsWEg~g------LriA~AvdsfiyfanI 336 (1189)
T KOG2041|consen 298 G----HIVGTLKVPGSCITGLSWEGTG------LRIAIAVDSFIYFANI 336 (1189)
T ss_pred h----hheEEEecCCceeeeeEEcCCc------eEEEEEecceEEEEee
Confidence 2 2567777777889999997765 2333334555554433
No 278
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.09 E-value=7.6e-08 Score=89.66 Aligned_cols=195 Identities=16% Similarity=0.099 Sum_probs=117.9
Q ss_pred CCCcEEEEEeCC--CeEEEEECC---CcEEEEECCCcceEEEeecccccEEEEEEecCCe-EE-EEeCCC--eEEEecCC
Q 013717 211 HGDAVTGLAVNN--GLIYSVSWD---KSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VY-TGSADR--KIRVWAKP 281 (437)
Q Consensus 211 ~~~~v~~~~~~~--~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~dg--~v~iwd~~ 281 (437)
+...+....|+| +.|+..+.+ ..|.+||+.+++... +....+.+....|+|||+ |+ +...+| .|.+||+.
T Consensus 197 ~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~ 275 (430)
T PRK00178 197 SREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLA 275 (430)
T ss_pred CCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECC
Confidence 666788889998 667665533 369999998886543 333344566789999998 55 444455 57778876
Q ss_pred CCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC-CC--cEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEE
Q 013717 282 FNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC-DR--SILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMS 358 (437)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~ 358 (437)
+.. ...+..+........|+|||+.|+..+. +| .|+++|+.+++... +. ..+.......++++++.|+.
T Consensus 276 ~~~-----~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt--~~~~~~~~~~~Spdg~~i~~ 347 (430)
T PRK00178 276 SRQ-----LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VT--FVGNYNARPRLSADGKTLVM 347 (430)
T ss_pred CCC-----eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-ee--cCCCCccceEECCCCCEEEE
Confidence 543 2233344455667889999998776553 33 57777887664221 21 22222223455666777666
Q ss_pred EeC-CC--cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCc--EEEEeeccC
Q 013717 359 GSA-DR--TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGE--IRAWQVSVS 423 (437)
Q Consensus 359 ~~~-dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~--i~iw~~~~~ 423 (437)
.+. ++ .|.+||+.+++. ..+.. ........|+|++.. ++++...+|. |.+++++..
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~----~~lt~-~~~~~~p~~spdg~~----i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSV----RILTD-TSLDESPSVAPNGTM----LIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred EEccCCceEEEEEECCCCCE----EEccC-CCCCCCceECCCCCE----EEEEEecCCceEEEEEECCCC
Confidence 554 33 588899887652 22221 122235579998853 5555544444 555666543
No 279
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.05 E-value=1.1e-09 Score=87.60 Aligned_cols=195 Identities=16% Similarity=0.268 Sum_probs=121.0
Q ss_pred EEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEee--cccccEEEEEEe-----------cCCeEEEEeCCCeEEEecC
Q 013717 215 VTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIK--AHEDAVNAVAVS-----------AGGTVYTGSADRKIRVWAK 280 (437)
Q Consensus 215 v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~-----------~~~~l~~~~~dg~v~iwd~ 280 (437)
++.+.+.. ..|+++..++.+..+..-++.+...++ ...++..+++.+ ++..++++..||.+.+++.
T Consensus 39 ~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~ 118 (319)
T KOG4714|consen 39 LSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST 118 (319)
T ss_pred EEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence 55555554 667777777777776655544433222 111222223222 3445999999999999986
Q ss_pred CCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe-----CCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-
Q 013717 281 PFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA-----CDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG- 354 (437)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 354 (437)
+... ........-...-.+.++...++.+.++. .-+..++|+++..+........ ...+.+++.++.
T Consensus 119 ~~~~---~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~----~~~v~~l~~hp~q 191 (319)
T KOG4714|consen 119 DKDL---ALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA----LDAVTALCSHPAQ 191 (319)
T ss_pred hHHH---hhhhhcccccccccccceeecccEEecCCcceEeeccceeeecccccccccccccc----cccchhhhCCccc
Confidence 5321 12222211111222333334455555432 2345677777643322222111 222666666554
Q ss_pred --EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717 355 --LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 355 --~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
++++|+.||.+-+||.+... .+...+.+|+.+|+.+-|+|..+. -|+++++||.+-.||-.+
T Consensus 192 q~~v~cgt~dg~~~l~d~rn~~--~p~S~l~ahk~~i~eV~FHpk~p~----~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 192 QHLVCCGTDDGIVGLWDARNVA--MPVSLLKAHKAEIWEVHFHPKNPE----HLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccEEEEecCCCeEEEEEccccc--chHHHHHHhhhhhhheeccCCCch----heeEecCCCcEEEEcCCC
Confidence 88999999999999999864 577788999999999999998875 799999999999999874
No 280
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.02 E-value=1.7e-07 Score=87.06 Aligned_cols=195 Identities=12% Similarity=0.101 Sum_probs=114.0
Q ss_pred CCCcEEEEEeCC--CeEEEEEC-CC--cEEEEECCCcceEEEeecccccEEEEEEecCCe-EE-EEeCCCe--EEEecCC
Q 013717 211 HGDAVTGLAVNN--GLIYSVSW-DK--SLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VY-TGSADRK--IRVWAKP 281 (437)
Q Consensus 211 ~~~~v~~~~~~~--~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~dg~--v~iwd~~ 281 (437)
+...+....|+| +.|+..+. ++ .|.+||+.+++... +....+.....+|+|||+ |+ +...+|. |.++|+.
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~ 294 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIA 294 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECC
Confidence 556788888988 56665543 33 58899998876533 222333445789999998 65 4566665 6666765
Q ss_pred CCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC-CC--cEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEE
Q 013717 282 FNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC-DR--SILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMS 358 (437)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~ 358 (437)
.+. ...+..+.......+|+|||+.|+..+. ++ .|+++|+.+++... +. ..+....-..+++++++|+.
T Consensus 295 tg~-----~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt--~~g~~~~~~~~SpDG~~l~~ 366 (448)
T PRK04792 295 TKA-----LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LT--FEGEQNLGGSITPDGRSMIM 366 (448)
T ss_pred CCC-----eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-Ee--cCCCCCcCeeECCCCCEEEE
Confidence 432 2333344455677899999998876553 33 46677777654221 11 22222222355666776655
Q ss_pred EeC-CC--cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCc--EEEEeeccC
Q 013717 359 GSA-DR--TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGE--IRAWQVSVS 423 (437)
Q Consensus 359 ~~~-dg--~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~--i~iw~~~~~ 423 (437)
.+. ++ .|.++|+.+++ ...+... .......|+|++.. ++++...+|. +.+++.+..
T Consensus 367 ~~~~~g~~~I~~~dl~~g~----~~~lt~~-~~d~~ps~spdG~~----I~~~~~~~g~~~l~~~~~~G~ 427 (448)
T PRK04792 367 VNRTNGKFNIARQDLETGA----MQVLTST-RLDESPSVAPNGTM----VIYSTTYQGKQVLAAVSIDGR 427 (448)
T ss_pred EEecCCceEEEEEECCCCC----eEEccCC-CCCCCceECCCCCE----EEEEEecCCceEEEEEECCCC
Confidence 544 44 35556777654 1222222 12224479998863 5566656665 566666543
No 281
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=1.5e-08 Score=92.64 Aligned_cols=243 Identities=13% Similarity=0.082 Sum_probs=161.2
Q ss_pred CcccEEEEEEeC--CeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEE
Q 013717 141 SSGSVKSVTFCD--GKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGL 218 (437)
Q Consensus 141 h~~~v~~l~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 218 (437)
......|+.|+. +.++.|+.||.+++..+.+.........+.... .-...+.+.+|...|.-+
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~s---------------nLsmNQtLeGH~~sV~vv 77 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAAS---------------NLSMNQTLEGHNASVMVV 77 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCccccccccccc---------------ccchhhhhccCcceEEEE
Confidence 456788999983 349999999999999887654222222111000 011224557899999999
Q ss_pred EeCC--CeEEEEECCCcEEEEECCCcceEEEee--cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEe
Q 013717 219 AVNN--GLIYSVSWDKSLKIWRASDLRCLESIK--AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATL 293 (437)
Q Consensus 219 ~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~ 293 (437)
.|+. ..|-+...+|.|.+|-+-.+.-...+. ..+..|.++.|..||. +.....||.|.+=.++.+.--.+ .+
T Consensus 78 TWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgK---eL 154 (1189)
T KOG2041|consen 78 TWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGK---EL 154 (1189)
T ss_pred EeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecch---hc
Confidence 9998 778888899999999987765433332 3466789999999998 88889999888866654321111 11
Q ss_pred eCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCcc-------ceEEeeeecccccceEEEEee----------CCEE
Q 013717 294 EKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSAN-------HMVVTGALRGHGKAILCLINV----------AGLL 356 (437)
Q Consensus 294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~~i~~~~~~----------~~~l 356 (437)
+ ......+.|++|.+.++.+-.+|.+++||....-. .....+.+......+..+.|. ...|
T Consensus 155 k--g~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~l 232 (1189)
T KOG2041|consen 155 K--GQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRL 232 (1189)
T ss_pred c--hheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEE
Confidence 1 22345789999999999999999999999764311 011111122222234444432 2289
Q ss_pred EEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCC
Q 013717 357 MSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLD 412 (437)
Q Consensus 357 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d 412 (437)
+++-..|.+.|..-.+... ++-.-.+ -.|.+..|++++. +|+.+|.|
T Consensus 233 avcy~nGr~QiMR~eND~~--Pvv~dtg--m~~vgakWnh~G~-----vLAvcG~~ 279 (1189)
T KOG2041|consen 233 AVCYANGRMQIMRSENDPE--PVVVDTG--MKIVGAKWNHNGA-----VLAVCGND 279 (1189)
T ss_pred EEEEcCceehhhhhcCCCC--CeEEecc--cEeecceecCCCc-----EEEEccCc
Confidence 9999999999987666552 3222222 5688889999885 67777764
No 282
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=1.9e-09 Score=89.81 Aligned_cols=149 Identities=17% Similarity=0.197 Sum_probs=107.7
Q ss_pred EEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccce
Q 013717 267 YTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI 346 (437)
Q Consensus 267 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i 346 (437)
++.+.+-.|-+-|+.++. ...+. ..+.|.++.|...++++..|+.+|.|..+|++...+-.......-.|...|
T Consensus 228 fs~G~sqqv~L~nvetg~-----~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssv 301 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGH-----QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSV 301 (425)
T ss_pred ecccccceeEEEEeeccc-----ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcch
Confidence 455566777787776543 22333 567899999998899999999999999999986521111111122377777
Q ss_pred EEEE---eeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717 347 LCLI---NVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 347 ~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
+++. +++++|++.+.+|+|++||++.-+...-+....||.+.-.-+-++-+... ..++++|+|...|||.++.+
T Consensus 302 tslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~ee---g~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 302 TSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEE---GSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred hhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccccc---ceEEEccCeeEEEEEecccC
Confidence 7764 56779999999999999999976633348899999775555544433322 38999999999999999976
Q ss_pred C
Q 013717 424 C 424 (437)
Q Consensus 424 ~ 424 (437)
.
T Consensus 379 h 379 (425)
T KOG2695|consen 379 H 379 (425)
T ss_pred c
Confidence 4
No 283
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.97 E-value=1.8e-08 Score=85.87 Aligned_cols=161 Identities=16% Similarity=0.184 Sum_probs=108.9
Q ss_pred EEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccce
Q 013717 255 VNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHM 333 (437)
Q Consensus 255 v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 333 (437)
...+..+++++ +|++..+....+++++.+.+..+++.... -....+++.|..+......+..-|.++-+|+-....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-- 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-- 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence 44455677788 77777777777888776554334443333 233345556655555666555555555554433111
Q ss_pred EEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecC
Q 013717 334 VVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSL 411 (437)
Q Consensus 334 ~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~ 411 (437)
-.....-||-..++.++++++ +|+++..|..|+|-.....- ..-...-||+.-|..++..++. .|+++|.
T Consensus 142 ~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f--~IesfclGH~eFVS~isl~~~~------~LlS~sG 213 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF--VIESFCLGHKEFVSTISLTDNY------LLLSGSG 213 (390)
T ss_pred cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc--chhhhccccHhheeeeeeccCc------eeeecCC
Confidence 112234678888888877655 99999999999998776532 1223346799999999998875 7999999
Q ss_pred CCcEEEEeeccCCCC
Q 013717 412 DGEIRAWQVSVSCPN 426 (437)
Q Consensus 412 dg~i~iw~~~~~~~~ 426 (437)
|++|++||+.+++..
T Consensus 214 D~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLL 228 (390)
T ss_pred CCcEEEEecccCCcc
Confidence 999999999998753
No 284
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=4.8e-07 Score=83.47 Aligned_cols=233 Identities=12% Similarity=0.010 Sum_probs=128.3
Q ss_pred eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe----EE-EEecCC--eEEEEeCCCCcccccccccCccccceee
Q 013717 118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK----IF-TAHQDC--KIRVWQLTPTKHHKLKTTLPTVNDRLLR 190 (437)
Q Consensus 118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 190 (437)
.|.+.|.+++..+.+.. ....+..-.|+|++ ++ +...+| .|.+.++.+++......
T Consensus 166 ~l~~~d~dG~~~~~lt~------~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~----------- 228 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQ------EHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILA----------- 228 (428)
T ss_pred eEEEEcCCCCCceEccc------CCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeec-----------
Confidence 56777777654333322 34455677899873 32 333333 57777887765332211
Q ss_pred ecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEEC-----CCcEEEEECCCc---ceEEEeecccccEEEEEE
Q 013717 191 FMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSW-----DKSLKIWRASDL---RCLESIKAHEDAVNAVAV 260 (437)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~-----dg~i~iwd~~~~---~~~~~~~~~~~~v~~~~~ 260 (437)
..+......|+| +.|+..+. +..+.+|++..+ +...............+|
T Consensus 229 --------------------~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w 288 (428)
T PRK01029 229 --------------------LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF 288 (428)
T ss_pred --------------------CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEE
Confidence 222334567887 56665442 223445776653 323333222334567899
Q ss_pred ecCCe-EEEEe-CCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC---CcEEEEECCCCccceEE
Q 013717 261 SAGGT-VYTGS-ADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD---RSILVWDREDSANHMVV 335 (437)
Q Consensus 261 ~~~~~-l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~ 335 (437)
+|||+ |+..+ .+|...+|.+..+... .....+......+....|+|||++|+..+.+ ..|++||+.+++... +
T Consensus 289 SPDG~~Laf~s~~~g~~~ly~~~~~~~g-~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~-L 366 (428)
T PRK01029 289 SPDGTRLVFVSNKDGRPRIYIMQIDPEG-QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQ-L 366 (428)
T ss_pred CCCCCEEEEEECCCCCceEEEEECcccc-cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEE-c
Confidence 99998 66655 4676566643221111 1123333344566788999999988876543 469999998775322 2
Q ss_pred eeeecccccce--EEEEeeCCEEEE-EeC--CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEcc
Q 013717 336 TGALRGHGKAI--LCLINVAGLLMS-GSA--DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTE 397 (437)
Q Consensus 336 ~~~~~~~~~~i--~~~~~~~~~l~~-~~~--dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 397 (437)
. .....+ ..+++++..|+. +.. ...|+++|+..++ ...+....+.+...+|+|.
T Consensus 367 t----~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~----~~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 367 T----TSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK----TRKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred c----CCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCCcccCceecCC
Confidence 1 111222 334445555553 333 3468888988755 2222234455667778774
No 285
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=1.1e-06 Score=78.41 Aligned_cols=316 Identities=10% Similarity=0.061 Sum_probs=185.3
Q ss_pred ceeeccccccccccCCCceeEEecCCCcceeeeecCccCCeEEEEee--CCEEEEEec-----------C-eEEEEeCCC
Q 013717 61 SLQTLPSVPSLQKLSPDETINFSSASHLCINSVQLGHKLPIGCIAVH--HNFLYAASS-----------H-EINVYDRTG 126 (437)
Q Consensus 61 ~~~~~~~~~~~~s~s~dg~i~~~~~~~~~~~~~~~~h~~~V~~l~~~--~~~l~s~~~-----------d-~v~vwd~~~ 126 (437)
-+..+|-...+++.-..| |.+|--.. ...++.+.|. .|.-+.|| .+||+|-+. + .++|||+.+
T Consensus 215 yv~wSP~GTYL~t~Hk~G-I~lWGG~~-f~r~~RF~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t 291 (698)
T KOG2314|consen 215 YVRWSPKGTYLVTFHKQG-IALWGGES-FDRIQRFYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT 291 (698)
T ss_pred eEEecCCceEEEEEeccc-eeeecCcc-HHHHHhccCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc
Confidence 567788888888887776 45565443 3344444554 47778888 899999872 2 799999999
Q ss_pred CceeeeeccccCCCCcccEEEEEEe-CCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccc
Q 013717 127 TTWTSINTFNDNDSSSGSVKSVTFC-DGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKK 205 (437)
Q Consensus 127 ~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (437)
|. ..+.+.........-.-..|+ ++.+++.-.-..|.||+..+........ +
T Consensus 292 G~--lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Ks-l------------------------ 344 (698)
T KOG2314|consen 292 GL--LKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKKS-L------------------------ 344 (698)
T ss_pred cc--hhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeecccc-c------------------------
Confidence 64 344443322222233445677 4444444444679999877543221111 1
Q ss_pred eeeecCCCcEEEEEeCC--CeEEEEEC-----CCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEE---------
Q 013717 206 KLWIEHGDAVTGLAVNN--GLIYSVSW-----DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTG--------- 269 (437)
Q Consensus 206 ~~~~~~~~~v~~~~~~~--~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~--------- 269 (437)
.-..|....|+| +.||.=.. -..+.+..+.+++.+++..-+.-.=..+-|-.+|..++.
T Consensus 345 -----ki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~ 419 (698)
T KOG2314|consen 345 -----KISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSK 419 (698)
T ss_pred -----CCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeecccc
Confidence 334577778888 34433221 234566666666666655433322233445555552222
Q ss_pred --eCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC---CCcEEEEECCCCccceEEeeeeccccc
Q 013717 270 --SADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC---DRSILVWDREDSANHMVVTGALRGHGK 344 (437)
Q Consensus 270 --~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~~~~~~~~~~~~ 344 (437)
+.-..+.|+.++... .++... .....|...+|-|.|..+++-+. ..++.+|.+++......+...+.....
T Consensus 420 ~~g~f~n~eIfrireKd---Ipve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~ 495 (698)
T KOG2314|consen 420 VKGQFSNLEIFRIREKD---IPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFA 495 (698)
T ss_pred ccceEeeEEEEEeeccC---CCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhccccc
Confidence 222235555554322 122222 24577899999999998876554 457889988754333344444443333
Q ss_pred ceEEEEeeCCEEEEE---eCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecC------CCcE
Q 013717 345 AILCLINVAGLLMSG---SADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSL------DGEI 415 (437)
Q Consensus 345 ~i~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~------dg~i 415 (437)
.-..+++.|.+++.+ +..|.+.++|..... +..+-.......+.+.|.|.| +|+++++. |.--
T Consensus 496 N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~---~k~~~~~eh~~at~veWDPtG-----RYvvT~ss~wrhk~d~GY 567 (698)
T KOG2314|consen 496 NTVFWSPKGRFVVVAALVSRRGDLEFYDTDYAD---LKDTASPEHFAATEVEWDPTG-----RYVVTSSSSWRHKVDNGY 567 (698)
T ss_pred ceEEEcCCCcEEEEEEecccccceEEEecchhh---hhhccCccccccccceECCCC-----CEEEEeeehhhhccccce
Confidence 334455556665554 457889999988522 223333334467889999998 58998875 5556
Q ss_pred EEEeeccC
Q 013717 416 RAWQVSVS 423 (437)
Q Consensus 416 ~iw~~~~~ 423 (437)
++|++...
T Consensus 568 ri~tfqGr 575 (698)
T KOG2314|consen 568 RIFTFQGR 575 (698)
T ss_pred EEEEeecH
Confidence 88887754
No 286
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=4.7e-09 Score=87.56 Aligned_cols=164 Identities=17% Similarity=0.191 Sum_probs=116.6
Q ss_pred EEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCccc-ceeeEEeeCccccEEEE
Q 013717 226 YSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKR-HALIATLEKHKSAVNAL 303 (437)
Q Consensus 226 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~i~~~ 303 (437)
++.+.+-.|-+-|++++.. +.+. .++.|.++.|...+. ++.|..+|.|..+|++..... ......+. |.+.|+++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhh
Confidence 6667788899999988743 3343 667799999987566 899999999999999865322 22333333 88999999
Q ss_pred EEcc-CCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccce----EEEEeeCCEEEEEeCCCcEEEeeCCCCCCeee
Q 013717 304 ALSD-DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI----LCLINVAGLLMSGSADRTVRIWQRGSDGRFGC 378 (437)
Q Consensus 304 ~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i----~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 378 (437)
..-. ++++|++.+.+|+|++||.+..++.. -...+.||...- ..+......+++++.|...|||.++.+. +
T Consensus 305 q~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~-~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh---L 380 (425)
T KOG2695|consen 305 QILQFSQQKLMASDMTGKIKLYDLRATKCKK-SVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH---L 380 (425)
T ss_pred hhhccccceEeeccCcCceeEeeehhhhccc-ceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc---e
Confidence 8877 78899999999999999998766532 233455664433 3333344589999999999999999877 5
Q ss_pred eeeecCC----CCCeeEEEEEc
Q 013717 379 LAVLEGH----TKPVKSLTAVT 396 (437)
Q Consensus 379 ~~~~~~h----~~~v~~l~~~~ 396 (437)
+.++... ...+..++|..
T Consensus 381 l~tipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 381 LCTIPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred eeccCCCCccccccccceehhc
Confidence 5554422 22455555543
No 287
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.91 E-value=2.6e-08 Score=84.90 Aligned_cols=146 Identities=18% Similarity=0.220 Sum_probs=96.6
Q ss_pred CeEEEEECCCcEEEEECCCcce----EEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCcc
Q 013717 223 GLIYSVSWDKSLKIWRASDLRC----LESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHK 297 (437)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 297 (437)
.+++.+..+....+++...... +.... ....-+++.+..+.. ...+-.-|.++-+|+-.... .....+-+|-
T Consensus 75 ~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--~~~~~~lGhv 151 (390)
T KOG3914|consen 75 RLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS--GRCEPILGHV 151 (390)
T ss_pred eEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccc--cCcchhhhhh
Confidence 6777777777777777655432 22221 222333444444333 44443334444333322111 1233445799
Q ss_pred ccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCC
Q 013717 298 SAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 374 (437)
+.++.++++||+++|+++..|..|+|-..... .....-.-||..-|..++..++ .|++|+.|++|++||+.+++
T Consensus 152 Sml~dVavS~D~~~IitaDRDEkIRvs~ypa~---f~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 152 SMLLDVAVSPDDQFIITADRDEKIRVSRYPAT---FVIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred hhhheeeecCCCCEEEEecCCceEEEEecCcc---cchhhhccccHhheeeeeeccCceeeecCCCCcEEEEecccCC
Confidence 99999999999999999999999999877533 2233335689999999988766 67999999999999999987
No 288
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.90 E-value=1.3e-06 Score=80.73 Aligned_cols=200 Identities=10% Similarity=-0.050 Sum_probs=110.8
Q ss_pred CcEEEEEeCC--Ce---EEEEECC--CcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeC-CC----eEEEec
Q 013717 213 DAVTGLAVNN--GL---IYSVSWD--KSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSA-DR----KIRVWA 279 (437)
Q Consensus 213 ~~v~~~~~~~--~~---l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~-dg----~v~iwd 279 (437)
..+..=.|+| +. +++...+ ..|.+.++.+++.... ....+.....+|+|||+ |+..+. +| .+.+|+
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~ 263 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFS 263 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecCCCCccceEECCCCCEEEEEECCCCCcceeEEEee
Confidence 3445557877 22 2344444 3588888887764333 33445566789999997 655442 23 344466
Q ss_pred CCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe-CCCcEEEE--ECCCCccceEEeeeecccccce--EEEEeeCC
Q 013717 280 KPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA-CDRSILVW--DREDSANHMVVTGALRGHGKAI--LCLINVAG 354 (437)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~--d~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~ 354 (437)
+.... ..................+|+|||+.|+..+ .+|...+| ++......... +..+...+ ..++++++
T Consensus 264 ~~~g~-~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~---lt~~~~~~~~p~wSPDG~ 339 (428)
T PRK01029 264 LETGA-IGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL---LTKKYRNSSCPAWSPDGK 339 (428)
T ss_pred cccCC-CCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE---eccCCCCccceeECCCCC
Confidence 54321 1112222222223446789999999877665 46654454 44321111111 11222233 34555566
Q ss_pred EEEEEeCC---CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecC--CCcEEEEeeccCCC
Q 013717 355 LLMSGSAD---RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSL--DGEIRAWQVSVSCP 425 (437)
Q Consensus 355 ~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~--dg~i~iw~~~~~~~ 425 (437)
.|+..+.+ ..|.+||+.+++ ...+......+....|+|++.. +++++.. ...|.+|++..++.
T Consensus 340 ~Laf~~~~~g~~~I~v~dl~~g~----~~~Lt~~~~~~~~p~wSpDG~~----L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 340 KIAFCSVIKGVRQICVYDLATGR----DYQLTTSPENKESPSWAIDSLH----LVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred EEEEEEcCCCCcEEEEEECCCCC----eEEccCCCCCccceEECCCCCE----EEEEECCCCCceEEEEECCCCCE
Confidence 66655443 369999998776 2233333345678899999853 4445544 34688888877653
No 289
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.89 E-value=1.1e-07 Score=78.48 Aligned_cols=260 Identities=13% Similarity=0.214 Sum_probs=159.1
Q ss_pred CcccEEEEEEeCC--eEEEEecCCeEEEEeCCCCc--ccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717 141 SSGSVKSVTFCDG--KIFTAHQDCKIRVWQLTPTK--HHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT 216 (437)
Q Consensus 141 h~~~v~~l~~~~~--~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 216 (437)
....|+++.|... .+++|...|.|.++.-+... ..+.+..+.++...+..+ +. ..-...|.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYL--------------kS-leieEKin 89 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYL--------------KS-LEIEEKIN 89 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhh--------------hh-ccHHHHhh
Confidence 4567899999844 48888888999999866432 111111121111100000 00 01234567
Q ss_pred EEEeCC----CeEEEEECCCcEEEEECCCcc-------------------------------------eE-----EEe-e
Q 013717 217 GLAVNN----GLIYSVSWDKSLKIWRASDLR-------------------------------------CL-----ESI-K 249 (437)
Q Consensus 217 ~~~~~~----~~l~~~~~dg~i~iwd~~~~~-------------------------------------~~-----~~~-~ 249 (437)
.+.|.. ..++..+.|.+|++|.+.... .+ +.+ .
T Consensus 90 ~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaN 169 (460)
T COG5170 90 AIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYAN 169 (460)
T ss_pred heeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccc
Confidence 777754 677888899999999875320 00 001 2
Q ss_pred cccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCcc-----ccEEEEEEccC-CCEEEEEeCCCcEEE
Q 013717 250 AHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHK-----SAVNALALSDD-GTVLFSGACDRSILV 323 (437)
Q Consensus 250 ~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~-~~~l~~~~~dg~i~i 323 (437)
.|.-.|+++.++.|...+....|-.|.+|++......... ..++.|. .-|++..|+|. .+.+.-.+..|.|++
T Consensus 170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnI-VDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNI-VDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred cceeEeeeeeecCchheeeeccceeeeeccccccCCceEE-EeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 4666788999988887666677889999988654433332 2333333 45889999994 457777788999999
Q ss_pred EECCCCccceEEe----e--------eecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCC---
Q 013717 324 WDREDSANHMVVT----G--------ALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHT--- 386 (437)
Q Consensus 324 ~d~~~~~~~~~~~----~--------~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~--- 386 (437)
-|++......... . -+.+-...|..+.|+++ ++++-+. -+|+|||++..+ .++.+..-|.
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k--~pikTi~~h~~l~ 325 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAK--NPIKTIPMHCDLM 325 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccccc--CCceeechHHHHH
Confidence 9998432111100 0 11122345566666654 6655443 579999999876 5677765553
Q ss_pred ---------CCe---eEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 387 ---------KPV---KSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 387 ---------~~v---~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
+.| ..+.|+.+.. .+++|+......+|-..+..
T Consensus 326 ~~l~d~YEnDaifdkFeisfSgd~~-----~v~sgsy~NNfgiyp~~ssg 370 (460)
T COG5170 326 DELNDVYENDAIFDKFEISFSGDDK-----HVLSGSYSNNFGIYPTDSSG 370 (460)
T ss_pred HHHHhhhhccceeeeEEEEecCCcc-----cccccccccceeeeccccCC
Confidence 223 3466777664 58899888888888755543
No 290
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=8.7e-08 Score=82.95 Aligned_cols=246 Identities=12% Similarity=0.111 Sum_probs=165.1
Q ss_pred CccCCeEEEEee-CCEEEEEecC-eEEEEeCCC-CceeeeeccccCCCCcccEEEEEEeCCe--EEEEec-CCeEEEEeC
Q 013717 96 GHKLPIGCIAVH-HNFLYAASSH-EINVYDRTG-TTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQ-DCKIRVWQL 169 (437)
Q Consensus 96 ~h~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~-~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~-dg~i~iwd~ 169 (437)
=|.+-|+-+... .+++.+++-| .++.|.-.. .-.+.+..+ ..|-+.|.+++.+-++ +.+.+. |..++++|+
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfVKhF---raHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv 83 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFVKHF---RAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDV 83 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeehhhh---HHHHHHHHhhhccccceeEeeccCcccceeEEEe
Confidence 588889888888 9999999999 999998765 223333333 5789999999998555 666666 999999999
Q ss_pred CCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC----CeEEE-EECCCcEEEEECCCcc-
Q 013717 170 TPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN----GLIYS-VSWDKSLKIWRASDLR- 243 (437)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~~-~~~dg~i~iwd~~~~~- 243 (437)
.+-.....++... -.+.+. +..++ ..+++ .-.+|.+.++|-...-
T Consensus 84 En~DminmiKL~~----------------------------lPg~a~-wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~ 134 (558)
T KOG0882|consen 84 ENFDMINMIKLVD----------------------------LPGFAE-WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFC 134 (558)
T ss_pred eccchhhhccccc----------------------------CCCceE-EecCCCCeeeeEEeecccCCCcEEECCcCCcC
Confidence 8765443222110 111111 11122 13333 3467899999975443
Q ss_pred -eEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcc-----------cceeeEEeeCccccEEEEEEccCCC
Q 013717 244 -CLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEK-----------RHALIATLEKHKSAVNALALSDDGT 310 (437)
Q Consensus 244 -~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~-----------~~~~~~~~~~~~~~i~~~~~~~~~~ 310 (437)
....-..|..+|.++.+.+-+. +++....|.|..|.....-+ ....+..+........++.|+|+|.
T Consensus 135 q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~ 214 (558)
T KOG0882|consen 135 QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGA 214 (558)
T ss_pred ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccC
Confidence 2333346899999999999998 88888899999997652100 0011222334556788999999999
Q ss_pred EEEEEeCCCcEEEEECCCCccceEEeee----------------------------ecccccc---eEEEEeeCCEEEEE
Q 013717 311 VLFSGACDRSILVWDREDSANHMVVTGA----------------------------LRGHGKA---ILCLINVAGLLMSG 359 (437)
Q Consensus 311 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------------------------~~~~~~~---i~~~~~~~~~l~~~ 359 (437)
.+.+-+.|..|+++++++++....+... +..|... -.++.-++++|+-|
T Consensus 215 qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~ 294 (558)
T KOG0882|consen 215 QISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYG 294 (558)
T ss_pred cccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEee
Confidence 9999999999999999976543322110 1112211 13445567788888
Q ss_pred eCCCcEEEeeCCCCC
Q 013717 360 SADRTVRIWQRGSDG 374 (437)
Q Consensus 360 ~~dg~i~iwd~~~~~ 374 (437)
+.=| |++.++.++.
T Consensus 295 t~~g-ikvin~~tn~ 308 (558)
T KOG0882|consen 295 TILG-IKVINLDTNT 308 (558)
T ss_pred ccee-EEEEEeecCe
Confidence 8777 8888888765
No 291
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.88 E-value=5.4e-08 Score=91.45 Aligned_cols=183 Identities=13% Similarity=0.188 Sum_probs=138.5
Q ss_pred CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCcccc
Q 013717 108 HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVND 186 (437)
Q Consensus 108 ~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 186 (437)
+..++.|+-. .+..+|+.+........+ ..+.|.-|+.++..+.+|...|+|.+-|.++.+....+
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v-----~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~-------- 213 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEKETRTTNV-----SASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTF-------- 213 (1118)
T ss_pred Ccceeecchhhheeeeecccceeeeeeec-----cCCceEEEEecCcEEEeecccceEEeecCCcCceeeee--------
Confidence 5667777766 888999988543333332 23347777777777999999999999999887654443
Q ss_pred ceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEEC---------CCcEEEEECCCcceEEEeecccccEEE
Q 013717 187 RLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSW---------DKSLKIWRASDLRCLESIKAHEDAVNA 257 (437)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~v~~ 257 (437)
..|.+.|.++...++.|++++. |..|+|||++..+.+.-+.-+.++ .-
T Consensus 214 ----------------------~aHs~siSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~f 270 (1118)
T KOG1275|consen 214 ----------------------DAHSGSISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QF 270 (1118)
T ss_pred ----------------------eccccceeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hh
Confidence 3699999999999999999875 556899999988877766644443 55
Q ss_pred EEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEEC
Q 013717 258 VAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDR 326 (437)
Q Consensus 258 ~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (437)
+.|+|.-. +++++..|...+-|...-......+..+......+..++++++|+.++.|..+|.|.+|.-
T Consensus 271 lrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 271 LRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred hhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 77888664 9999999999999843322222234444555667999999999999999999999999983
No 292
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.87 E-value=4e-06 Score=85.65 Aligned_cols=201 Identities=12% Similarity=0.124 Sum_probs=123.4
Q ss_pred cEEEEEeCC--CeEEEEE-CCCcEEEEECCCcceEEEeecc-----------------cccEEEEEEec-CCe-EEEEeC
Q 013717 214 AVTGLAVNN--GLIYSVS-WDKSLKIWRASDLRCLESIKAH-----------------EDAVNAVAVSA-GGT-VYTGSA 271 (437)
Q Consensus 214 ~v~~~~~~~--~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~-----------------~~~v~~~~~~~-~~~-l~~~~~ 271 (437)
....+++++ +.|+++. .++.|+++|..++. +.++.+. -..-..++++| ++. +++.+.
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 346778875 5555554 45679999987754 3333210 11235789999 556 677778
Q ss_pred CCeEEEecCCCCcccceeeEEeeC---------------ccccEEEEEEccCCCEE-EEEeCCCcEEEEECCCCccceEE
Q 013717 272 DRKIRVWAKPFNEKRHALIATLEK---------------HKSAVNALALSDDGTVL-FSGACDRSILVWDREDSANHMVV 335 (437)
Q Consensus 272 dg~v~iwd~~~~~~~~~~~~~~~~---------------~~~~i~~~~~~~~~~~l-~~~~~dg~i~i~d~~~~~~~~~~ 335 (437)
++.|++||...+.. ..+.+ .-.....|+++|+|+.| ++-..++.|++||+.++......
T Consensus 704 ~~~I~v~d~~~g~v-----~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~ 778 (1057)
T PLN02919 704 QHQIWEYNISDGVT-----RVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLA 778 (1057)
T ss_pred CCeEEEEECCCCeE-----EEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEE
Confidence 89999998764321 11110 11345679999999854 45556789999999865422111
Q ss_pred ee---------eeccc--------ccceEEEE--eeCCEEEEEeCCCcEEEeeCCCCCCeeeee----------eecCCC
Q 013717 336 TG---------ALRGH--------GKAILCLI--NVAGLLMSGSADRTVRIWQRGSDGRFGCLA----------VLEGHT 386 (437)
Q Consensus 336 ~~---------~~~~~--------~~~i~~~~--~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------~~~~h~ 386 (437)
.. .+... ......++ .+++++++-..++.|++||..++....... ...++-
T Consensus 779 gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l 858 (1057)
T PLN02919 779 GGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQL 858 (1057)
T ss_pred ecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccccccc
Confidence 00 00000 01123444 445577888889999999998754111110 011222
Q ss_pred CCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 387 KPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 387 ~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
.....|++++++. ++++-+.++.|++||+.+++.
T Consensus 859 ~~P~GIavd~dG~-----lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 859 SEPAGLALGENGR-----LFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCceEEEEeCCCC-----EEEEECCCCEEEEEECCCCcc
Confidence 3577899999873 788888999999999988653
No 293
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=1.9e-07 Score=86.79 Aligned_cols=187 Identities=10% Similarity=0.079 Sum_probs=128.2
Q ss_pred CcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe
Q 013717 141 SSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV 220 (437)
Q Consensus 141 h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (437)
....+.|++++...++-|..+|.|++.+.+... ... ..|... ..
T Consensus 38 ~~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~-~~~-------------------------------~~~s~~----~~ 81 (846)
T KOG2066|consen 38 QNDAISCCAVHDKFFALGTHRGAVYLTTCQGNP-KTN-------------------------------FDHSSS----IL 81 (846)
T ss_pred hhhHHHHHHhhcceeeeccccceEEEEecCCcc-ccc-------------------------------cccccc----cc
Confidence 345778888888889999999999999987442 111 113332 23
Q ss_pred CCCeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecC------CeEEEEeCCCeEEEecCCCCcccceeeEEee
Q 013717 221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAG------GTVYTGSADRKIRVWAKPFNEKRHALIATLE 294 (437)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~------~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 294 (437)
.+.++++|+.||+|.|..+-+.+...++. ...++.+++++|+ +++++|+.-| +.++.-+.-... ....+.
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk--~~v~l~ 157 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK--DSVVLS 157 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc--cceeee
Confidence 34899999999999999998888777765 6678999999998 2399999999 888753322111 111455
Q ss_pred CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeec--ccccceEEEEeeCC-EEEEEeCCCcEEEeeCC
Q 013717 295 KHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALR--GHGKAILCLINVAG-LLMSGSADRTVRIWQRG 371 (437)
Q Consensus 295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~ 371 (437)
...++|.++.|. |+++|-++.+| |+|||+...+....+..... .....-..+.|.++ .|+.| ..-+|+|..++
T Consensus 158 ~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 158 EGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIG-WGDSVKICSIK 233 (846)
T ss_pred cCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEe-cCCeEEEEEEe
Confidence 677899999997 77999998877 99999987653332221110 00111245566666 55555 44468988887
No 294
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.87 E-value=4.7e-06 Score=73.12 Aligned_cols=166 Identities=14% Similarity=0.126 Sum_probs=118.8
Q ss_pred EEeCC-CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCC-eEEEecCCCCcccceeeEEee
Q 013717 218 LAVNN-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADR-KIRVWAKPFNEKRHALIATLE 294 (437)
Q Consensus 218 ~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~ 294 (437)
.+..+ ++++..+. |+..|.+...+-.++. ++.+.|.-..+.-++. ++.|..|| .+-+||.+.. .+..+.
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~-----e~kr~e 398 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG-----EVKRIE 398 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCc-----eEEEee
Confidence 33444 67777665 6777777655544443 4677788888887777 99999999 8999988754 356667
Q ss_pred CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCC----cEEEe
Q 013717 295 KHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADR----TVRIW 368 (437)
Q Consensus 295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg----~i~iw 368 (437)
..-+.|.++..+++|++++++.....|.++|++++..... -+...+-|+.+.|+++ ++|-+--+| .|++|
T Consensus 399 ~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~i----dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Ikly 474 (668)
T COG4946 399 KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLI----DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLY 474 (668)
T ss_pred CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEe----cccccceeEEEEEcCCceeEEEecCcceeeeeEEEE
Confidence 7788999999999999999999999999999998863322 2335677888888877 888776655 69999
Q ss_pred eCCCCCCeeeeeeecCCCCCeeEEEEEccCC
Q 013717 369 QRGSDGRFGCLAVLEGHTKPVKSLTAVTEEG 399 (437)
Q Consensus 369 d~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 399 (437)
|+..++-+ .+.+-.+|. .+-+|.|++.
T Consensus 475 dm~~~Kiy-~vTT~ta~D---fsPaFD~d~r 501 (668)
T COG4946 475 DMDGGKIY-DVTTPTAYD---FSPAFDPDGR 501 (668)
T ss_pred ecCCCeEE-EecCCcccc---cCcccCCCCc
Confidence 99986621 222223332 2335666664
No 295
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.87 E-value=3.7e-07 Score=84.52 Aligned_cols=242 Identities=10% Similarity=0.067 Sum_probs=168.7
Q ss_pred CcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe
Q 013717 141 SSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV 220 (437)
Q Consensus 141 h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 220 (437)
|...-.++.|++.+|++=+....|.+-|..+-+.++.+. .|...|+.+.|
T Consensus 14 ~~sN~~A~Dw~~~GLiAygshslV~VVDs~s~q~iqsie------------------------------~h~s~V~~VrW 63 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSGLIAYGSHSLVSVVDSRSLQLIQSIE------------------------------LHQSAVTSVRW 63 (1062)
T ss_pred CcccccccccCccceEEEecCceEEEEehhhhhhhhccc------------------------------cCccceeEEEe
Confidence 455577889999886665556789999988776655544 47788899888
Q ss_pred CC--------------CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEec---CCe--EEEEeCCCeEEEecCC
Q 013717 221 NN--------------GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSA---GGT--VYTGSADRKIRVWAKP 281 (437)
Q Consensus 221 ~~--------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~~--l~~~~~dg~v~iwd~~ 281 (437)
.| -.|+++...|.|.+||...+..+..+..+..++..+.|-+ +.+ +++-.....|.+|+..
T Consensus 64 ap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntd 143 (1062)
T KOG1912|consen 64 APAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTD 143 (1062)
T ss_pred ccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEcc
Confidence 55 2577788889999999999988888888899999999875 333 7777778999999776
Q ss_pred CCcccceeeEEeeCccccEEEEEEcc-CCCEEEEEeCCCcEEEEECCCCccce---EEeeeeccccc------------c
Q 013717 282 FNEKRHALIATLEKHKSAVNALALSD-DGTVLFSGACDRSILVWDREDSANHM---VVTGALRGHGK------------A 345 (437)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~~~------------~ 345 (437)
+++ .+-..........|+.+.| |.+.+..-+..|.+.+-+.-..+..- ...+....|.. .
T Consensus 144 tG~----k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns 219 (1062)
T KOG1912|consen 144 TGE----KFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNS 219 (1062)
T ss_pred CCc----eeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhcccc
Confidence 665 3334444455667799999 67777777788888877754322111 11111111111 0
Q ss_pred -------------eEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEec
Q 013717 346 -------------ILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGS 410 (437)
Q Consensus 346 -------------i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~ 410 (437)
...++|++. -++-......+.|+|++-.. ++....-..+.+.-+.+.|+..+ ..|++.-
T Consensus 220 ~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~---~l~vvpier~~akfv~vlP~~~r---d~LfclH 293 (1062)
T KOG1912|consen 220 TTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYEC---CLAVVPIERGGAKFVDVLPDPRR---DALFCLH 293 (1062)
T ss_pred ccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhc---eeEEEEeccCCcceeEeccCCCc---ceEEEEe
Confidence 012333433 23334456679999998755 66666666777778888888765 4899999
Q ss_pred CCCcEEEEeecc
Q 013717 411 LDGEIRAWQVSV 422 (437)
Q Consensus 411 ~dg~i~iw~~~~ 422 (437)
.||.+.+|--+.
T Consensus 294 ~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 294 SNGRLTIRVRKE 305 (1062)
T ss_pred cCCeEEEEEeec
Confidence 999999997665
No 296
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.85 E-value=4.1e-06 Score=71.39 Aligned_cols=215 Identities=14% Similarity=0.112 Sum_probs=129.1
Q ss_pred eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCe
Q 013717 118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSY 197 (437)
Q Consensus 118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (437)
.|..||..+++..-...+. ......+......++.+++++.++.|..||..+++.........
T Consensus 4 ~l~~~d~~tG~~~W~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~--------------- 66 (238)
T PF13360_consen 4 TLSALDPRTGKELWSYDLG--PGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPG--------------- 66 (238)
T ss_dssp EEEEEETTTTEEEEEEECS--SSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSS---------------
T ss_pred EEEEEECCCCCEEEEEECC--CCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccc---------------
Confidence 7889999886433222221 11233332233356778888999999999999997654443210
Q ss_pred eEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEe-eccc---ccEEEEEEec-CCeEEEEeCC
Q 013717 198 VTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESI-KAHE---DAVNAVAVSA-GGTVYTGSAD 272 (437)
Q Consensus 198 ~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~---~~v~~~~~~~-~~~l~~~~~d 272 (437)
..... .....+.++.+..++.|+.+|..+++.+... .... .......... ++.++++..+
T Consensus 67 ------------~~~~~---~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (238)
T PF13360_consen 67 ------------PISGA---PVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS 131 (238)
T ss_dssp ------------CGGSG---EEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC
T ss_pred ------------cccce---eeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEecc
Confidence 00011 2344477788888999999999999998884 3221 1112222222 3448888889
Q ss_pred CeEEEecCCCCcccceeeEEeeCccc----------cEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeeccc
Q 013717 273 RKIRVWAKPFNEKRHALIATLEKHKS----------AVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH 342 (437)
Q Consensus 273 g~v~iwd~~~~~~~~~~~~~~~~~~~----------~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 342 (437)
+.|..+|++++.. +........ .+..-....++ .++.++.++.+..+|+.+++... .. . .
T Consensus 132 g~l~~~d~~tG~~----~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w--~~--~-~ 201 (238)
T PF13360_consen 132 GKLVALDPKTGKL----LWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW--SK--P-I 201 (238)
T ss_dssp SEEEEEETTTTEE----EEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE--EE--C-S
T ss_pred CcEEEEecCCCcE----EEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE--Ee--c-C
Confidence 9999999876653 333322221 11222222245 77777778864444999887432 11 1 1
Q ss_pred ccceEEEEeeCCEEEEEeCCCcEEEeeCCCCC
Q 013717 343 GKAILCLINVAGLLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 343 ~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 374 (437)
..........++.|+.++.++.|..||+++++
T Consensus 202 ~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 202 SGIYSLPSVDGGTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp S-ECECEECCCTEEEEEETTTEEEEEETTTTE
T ss_pred CCccCCceeeCCEEEEEeCCCEEEEEECCCCC
Confidence 12222256677788888899999999999976
No 297
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.85 E-value=4.1e-06 Score=74.06 Aligned_cols=276 Identities=12% Similarity=0.154 Sum_probs=162.9
Q ss_pred ceeeccccccccccCCCc---------------eeEEecCCCcceeeeec-CccCC--eE-EEEee--CCEEEEEecCeE
Q 013717 61 SLQTLPSVPSLQKLSPDE---------------TINFSSASHLCINSVQL-GHKLP--IG-CIAVH--HNFLYAASSHEI 119 (437)
Q Consensus 61 ~~~~~~~~~~~~s~s~dg---------------~i~~~~~~~~~~~~~~~-~h~~~--V~-~l~~~--~~~l~s~~~d~v 119 (437)
.+.|+|....+.+-+..+ .+.+||... +..+..+ +-..+ .. -+.|+ ..|+|=-..+.+
T Consensus 76 ~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~s-g~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl 154 (561)
T COG5354 76 YLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIAS-GMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSL 154 (561)
T ss_pred ecccCcccceeeeeccCCccChhhccCCccccCceeEEeccC-ceeEeeccccCCcccccceeeeeecchhhhhhccCeE
Confidence 446666666666554333 377787765 4444555 44444 33 45555 566665555589
Q ss_pred EEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe----EE-----EEecCCeEEEEeCCCCcccccccccCccccceee
Q 013717 120 NVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK----IF-----TAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLR 190 (437)
Q Consensus 120 ~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----l~-----s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 190 (437)
.|+++ ++... ...+.. -....|....|+|.+ |+ ..+.++++++|.+..+..+.....+ ..+.....
T Consensus 155 ~i~e~-t~n~~-~~p~~~--lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf-k~~~~qLk 229 (561)
T COG5354 155 YIHEI-TDNIE-EHPFKN--LRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF-KVSGVQLK 229 (561)
T ss_pred EEEec-CCccc-cCchhh--ccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE-eecccEEE
Confidence 99997 32222 222211 123567788888652 33 2467788999988755433222211 00010000
Q ss_pred ecCCCCeeEEeeccceeeecCCCcEEEEEeC-----CCeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe
Q 013717 191 FMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN-----NGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT 265 (437)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~ 265 (437)
|......+.++... ..++ ....+.|++++...+.... ...++|...+|.|.+.
T Consensus 230 -----------------W~~~g~~ll~l~~t~~ksnKsyf----gesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~ 287 (561)
T COG5354 230 -----------------WQVLGKYLLVLVMTHTKSNKSYF----GESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSS 287 (561)
T ss_pred -----------------EecCCceEEEEEEEeeeccccee----ccceEEEEeecccccceec-cccccceeeeecccCC
Confidence 11111111111110 0111 2356888888754433332 5688999999999876
Q ss_pred ---EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC---CcEEEEECCCCccceEEeeee
Q 013717 266 ---VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD---RSILVWDREDSANHMVVTGAL 339 (437)
Q Consensus 266 ---l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~ 339 (437)
+++|..+-.+.++|++.+- . +......=+.+.|+|.+++++.++.| |.+-+||... .......+
T Consensus 288 ~F~vi~g~~pa~~s~~~lr~Nl-----~--~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~---rf~~~~~~ 357 (561)
T COG5354 288 RFAVISGYMPASVSVFDLRGNL-----R--FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG---RFKVAGAF 357 (561)
T ss_pred ceeEEecccccceeecccccce-----E--EecCCcccccccccCcccEEEEecCCccccceEEeccCC---ceEEEEEe
Confidence 5666789999999987642 2 22344555678899999999997765 6899999864 33455556
Q ss_pred cccccceEEEEeeCCEEEEEe------CCCcEEEeeCCCCC
Q 013717 340 RGHGKAILCLINVAGLLMSGS------ADRTVRIWQRGSDG 374 (437)
Q Consensus 340 ~~~~~~i~~~~~~~~~l~~~~------~dg~i~iwd~~~~~ 374 (437)
.+.......++++++++.+.. .|..|+|||+....
T Consensus 358 ~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 358 NGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred ecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 666777777777777666653 37789999998755
No 298
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.83 E-value=4.9e-05 Score=67.04 Aligned_cols=261 Identities=14% Similarity=0.096 Sum_probs=140.2
Q ss_pred ceeEEecCCCcceeeeec-CccCCeEEEEeeCCEEEEEec----------C-eEEEEeCCCCceeeeeccccCCC----C
Q 013717 78 ETINFSSASHLCINSVQL-GHKLPIGCIAVHHNFLYAASS----------H-EINVYDRTGTTWTSINTFNDNDS----S 141 (437)
Q Consensus 78 g~i~~~~~~~~~~~~~~~-~h~~~V~~l~~~~~~l~s~~~----------d-~v~vwd~~~~~~~~~~~~~~~~~----h 141 (437)
+++.+.|.......-..- |...... +.-+++.|+.+.. + .|.+||..+. +.+..+..... .
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~--~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH--LPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC--cEEeEEccCCCchhhc
Confidence 788888887744443333 5444432 3333777777766 3 9999999994 44444421111 1
Q ss_pred cccEEEEEEeCCe--EEEEe-c-CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEE
Q 013717 142 SGSVKSVTFCDGK--IFTAH-Q-DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTG 217 (437)
Q Consensus 142 ~~~v~~l~~~~~~--l~s~~-~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 217 (437)
......+++++++ ++... . +..|.+.|+.+++....+.. + +...-
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-p------------------------------~~~~v 152 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-P------------------------------DCYHI 152 (352)
T ss_pred cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-C------------------------------CCcEE
Confidence 2334477788665 54443 3 78999999998876554432 0 01111
Q ss_pred EEeCCCeEEEEECCCcEEEEECCC-cce-EE---Eeec-----ccccEEEEEEec-CCeEEEEeCCCeEEEecCCCCccc
Q 013717 218 LAVNNGLIYSVSWDKSLKIWRASD-LRC-LE---SIKA-----HEDAVNAVAVSA-GGTVYTGSADRKIRVWAKPFNEKR 286 (437)
Q Consensus 218 ~~~~~~~l~~~~~dg~i~iwd~~~-~~~-~~---~~~~-----~~~~v~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~ 286 (437)
....+.....-+.||......+.+ ++. .. .+.. ...+ .+.+ +|+.+-.+.+|.|.+.|+......
T Consensus 153 y~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~eG~V~~id~~~~~~~ 228 (352)
T TIGR02658 153 FPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYTGKIFQIDLSSGDAK 228 (352)
T ss_pred EEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCC----ceEcCCCcEEEEecCCeEEEEecCCCcce
Confidence 111121111222333333322211 110 01 1111 0112 3455 777444445599999997543221
Q ss_pred -ceeeEEeeC-------ccccEEEEEEccCCCEEEEEeC----------CCcEEEEECCCCccceEEeeeecccccceEE
Q 013717 287 -HALIATLEK-------HKSAVNALALSDDGTVLFSGAC----------DRSILVWDREDSANHMVVTGALRGHGKAILC 348 (437)
Q Consensus 287 -~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~ 348 (437)
......+.. ..+.+.-++++++++++++... .+.|.++|..+.+....+ ..++...-..
T Consensus 229 ~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i---~vG~~~~~ia 305 (352)
T TIGR02658 229 FLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKI---ELGHEIDSIN 305 (352)
T ss_pred ecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEE---eCCCceeeEE
Confidence 112222111 2233445999999998888532 257999999877643332 2234333344
Q ss_pred EEeeCC-EEEEEe-CCCcEEEeeCCCCCCeeeeeee
Q 013717 349 LINVAG-LLMSGS-ADRTVRIWQRGSDGRFGCLAVL 382 (437)
Q Consensus 349 ~~~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~ 382 (437)
++.++. +|++.. .++.|.++|..+++ .+..+
T Consensus 306 vS~Dgkp~lyvtn~~s~~VsViD~~t~k---~i~~i 338 (352)
T TIGR02658 306 VSQDAKPLLYALSTGDKTLYIFDAETGK---ELSSV 338 (352)
T ss_pred ECCCCCeEEEEeCCCCCcEEEEECcCCe---EEeee
Confidence 555556 666555 57889999999877 45544
No 299
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.82 E-value=7.3e-06 Score=67.52 Aligned_cols=199 Identities=13% Similarity=0.185 Sum_probs=119.8
Q ss_pred CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccc
Q 013717 108 HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVN 185 (437)
Q Consensus 108 ~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 185 (437)
|+.||.--+..|.|=..++.-...+......+...-.=+.++|++|. |+.+...|+|+++|+...............
T Consensus 9 Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~- 87 (282)
T PF15492_consen 9 GKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFP- 87 (282)
T ss_pred CcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccC-
Confidence 77777666557766666553222222222223334456789999887 888889999999999864322111100000
Q ss_pred cceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--------CeEEEEECCCcEEEEECCC-----cceEEEee---
Q 013717 186 DRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--------GLIYSVSWDKSLKIWRASD-----LRCLESIK--- 249 (437)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~l~~~~~dg~i~iwd~~~-----~~~~~~~~--- 249 (437)
..-...|..+.|-+ ..|++...+|.++-|-+.. .+....+.
T Consensus 88 -----------------------~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~ 144 (282)
T PF15492_consen 88 -----------------------GDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSS 144 (282)
T ss_pred -----------------------CccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecc
Confidence 01234455555533 3566677788888776532 23334433
Q ss_pred cccccEEEEEEecCCe-EEEEeC-CC----------eEEEecCCCCcccce-----------------eeE-----Ee--
Q 013717 250 AHEDAVNAVAVSAGGT-VYTGSA-DR----------KIRVWAKPFNEKRHA-----------------LIA-----TL-- 293 (437)
Q Consensus 250 ~~~~~v~~~~~~~~~~-l~~~~~-dg----------~v~iwd~~~~~~~~~-----------------~~~-----~~-- 293 (437)
.+...|.++.++|.-+ |++|+. .. -+..|.+-.+..-.+ ..+ .+
T Consensus 145 ~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~ 224 (282)
T PF15492_consen 145 HYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSR 224 (282)
T ss_pred cCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeec
Confidence 2467899999999877 555543 21 255664432211100 000 01
Q ss_pred -eCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCc
Q 013717 294 -EKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSA 330 (437)
Q Consensus 294 -~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 330 (437)
......|..|..+|||+.|++...+|.|.+|++.+-+
T Consensus 225 ~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 225 QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 1235679999999999999999999999999997654
No 300
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.82 E-value=3.7e-05 Score=65.73 Aligned_cols=215 Identities=12% Similarity=0.125 Sum_probs=128.1
Q ss_pred EEEEeC--Ce-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC-C
Q 013717 147 SVTFCD--GK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN-N 222 (437)
Q Consensus 147 ~l~~~~--~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~ 222 (437)
+++|.+ +. +++--..+.|..|+..+++.... ... ....+++. +
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~--------------------------------~~~-~~~G~~~~~~ 50 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI--------------------------------DLP-GPNGMAFDRP 50 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--------------------------------ESS-SEEEEEEECT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE--------------------------------ecC-CCceEEEEcc
Confidence 566774 33 44444678899999887653221 011 25666676 4
Q ss_pred -CeEEEEECCCcEEEEECCCcceEEEeec-----ccccEEEEEEecCCeEEEEeC-C--------CeEEEecCCCCcccc
Q 013717 223 -GLIYSVSWDKSLKIWRASDLRCLESIKA-----HEDAVNAVAVSAGGTVYTGSA-D--------RKIRVWAKPFNEKRH 287 (437)
Q Consensus 223 -~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~l~~~~~-d--------g~v~iwd~~~~~~~~ 287 (437)
+.++.+..++ +.++|..+++....... .....+.+++.|+|.+..+.. . |.|..++.. ..
T Consensus 51 ~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~--- 125 (246)
T PF08450_consen 51 DGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK--- 125 (246)
T ss_dssp TSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE---
T ss_pred CCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-Ce---
Confidence 7777777654 56669988865444432 345688999999999555443 2 456666554 11
Q ss_pred eeeEEeeCccccEEEEEEccCCCEEE-EEeCCCcEEEEECCCCccceE---EeeeecccccceEEEEe--eCCEEEEEeC
Q 013717 288 ALIATLEKHKSAVNALALSDDGTVLF-SGACDRSILVWDREDSANHMV---VTGALRGHGKAILCLIN--VAGLLMSGSA 361 (437)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~~---~~~~~~~~~~~i~~~~~--~~~~l~~~~~ 361 (437)
.......-...+.|+|+|+++.|+ +-+..+.|..|++........ ....+....+..-.++. ++++.++...
T Consensus 126 --~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~ 203 (246)
T PF08450_consen 126 --VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG 203 (246)
T ss_dssp --EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET
T ss_pred --EEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC
Confidence 222222345678999999998775 556788899999865433111 11122222222444444 4556666677
Q ss_pred CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEE-ccCCCCceEEEEEe
Q 013717 362 DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAV-TEEGQNGVVSVFSG 409 (437)
Q Consensus 362 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~~~~~~~l~s~ 409 (437)
.+.|.+++.+ ++ .+..+.-....+++++|. ++.. .+++|.
T Consensus 204 ~~~I~~~~p~-G~---~~~~i~~p~~~~t~~~fgg~~~~----~L~vTt 244 (246)
T PF08450_consen 204 GGRIVVFDPD-GK---LLREIELPVPRPTNCAFGGPDGK----TLYVTT 244 (246)
T ss_dssp TTEEEEEETT-SC---EEEEEE-SSSSEEEEEEESTTSS----EEEEEE
T ss_pred CCEEEEECCC-cc---EEEEEcCCCCCEEEEEEECCCCC----EEEEEe
Confidence 8899999988 55 455554444589999995 3333 355554
No 301
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.81 E-value=2e-05 Score=80.61 Aligned_cols=251 Identities=14% Similarity=0.082 Sum_probs=144.5
Q ss_pred eeecc-ccccccccCCCceeEEecCCCcceeeeec-C--c------------cCCeEEEEee--CCEEEEEec-C-eEEE
Q 013717 62 LQTLP-SVPSLQKLSPDETINFSSASHLCINSVQL-G--H------------KLPIGCIAVH--HNFLYAASS-H-EINV 121 (437)
Q Consensus 62 ~~~~~-~~~~~~s~s~dg~i~~~~~~~~~~~~~~~-~--h------------~~~V~~l~~~--~~~l~s~~~-d-~v~v 121 (437)
+...+ ......+-+.++.|.+++.+... +..+ + . -..-..++++ ++.|+.+.. + .|++
T Consensus 573 vavd~~~g~lyVaDs~n~rI~v~d~~G~~--i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~ 650 (1057)
T PLN02919 573 LAIDLLNNRLFISDSNHNRIVVTDLDGNF--IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALRE 650 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEeCCCCE--EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEE
Confidence 34443 23455555677788888775432 2222 1 1 1235778887 666666554 4 8999
Q ss_pred EeCCCCceeeeecccc----CCC-------CcccEEEEEEeC-Ce--EEEEecCCeEEEEeCCCCcccccccccCccccc
Q 013717 122 YDRTGTTWTSINTFND----NDS-------SSGSVKSVTFCD-GK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDR 187 (437)
Q Consensus 122 wd~~~~~~~~~~~~~~----~~~-------h~~~v~~l~~~~-~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 187 (437)
+|..++....+..-.. ..+ .-.....+++++ +. +++...++.|++||..++.......
T Consensus 651 id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G-------- 722 (1057)
T PLN02919 651 IDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSG-------- 722 (1057)
T ss_pred EecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEec--------
Confidence 9998754332211000 000 012346789986 33 6666788999999987764221100
Q ss_pred eeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--C-eEEEEECCCcEEEEECCCcceEEEeec--------------
Q 013717 188 LLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--G-LIYSVSWDKSLKIWRASDLRCLESIKA-------------- 250 (437)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~~~~~dg~i~iwd~~~~~~~~~~~~-------------- 250 (437)
++..... .........-.....+++++ + ++++-..++.|++||+.++.......+
T Consensus 723 -------~G~~~~~-~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~ 794 (1057)
T PLN02919 723 -------DGYERNL-NGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDH 794 (1057)
T ss_pred -------CCccccC-CCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCC
Confidence 0000000 00000001113456788887 4 445556679999999987653211100
Q ss_pred -------ccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEE----------eeCccccEEEEEEccCCCEE
Q 013717 251 -------HEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIAT----------LEKHKSAVNALALSDDGTVL 312 (437)
Q Consensus 251 -------~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~----------~~~~~~~i~~~~~~~~~~~l 312 (437)
.-.....++++++|. +++-+.++.|++||..+.... ..... ..+.-.....|+++++|+++
T Consensus 795 dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~ly 873 (1057)
T PLN02919 795 DGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLF 873 (1057)
T ss_pred CCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEE
Confidence 011235889999998 777788999999998643211 00000 01112357889999999988
Q ss_pred EEEeCCCcEEEEECCCCcc
Q 013717 313 FSGACDRSILVWDREDSAN 331 (437)
Q Consensus 313 ~~~~~dg~i~i~d~~~~~~ 331 (437)
++-+.++.|++||+++++.
T Consensus 874 VaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 874 VADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EEECCCCEEEEEECCCCcc
Confidence 8888999999999987653
No 302
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=2.2e-07 Score=86.41 Aligned_cols=184 Identities=17% Similarity=0.189 Sum_probs=129.5
Q ss_pred CCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCccccee
Q 013717 211 HGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHAL 289 (437)
Q Consensus 211 ~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~ 289 (437)
....+.|++++..+++.|..+|.|++++.... . .+...|... ..+|. +++|+.||+|.|..+-+...
T Consensus 38 ~~D~is~~av~~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~---- 105 (846)
T KOG2066|consen 38 QNDAISCCAVHDKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE---- 105 (846)
T ss_pred hhhHHHHHHhhcceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc----
Confidence 34567788888899999999999999997543 2 333334433 55677 99999999999987755432
Q ss_pred eEEeeCccccEEEEEEccC-----CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCc
Q 013717 290 IATLEKHKSAVNALALSDD-----GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRT 364 (437)
Q Consensus 290 ~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~ 364 (437)
...+ .-..++.+++++|+ .+.+++|+.-| +.++.-+-....... ......+.|.++.|.|+++|=++.+|
T Consensus 106 ~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v--~l~~~eG~I~~i~W~g~lIAWand~G- 180 (846)
T KOG2066|consen 106 ITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV--VLSEGEGPIHSIKWRGNLIAWANDDG- 180 (846)
T ss_pred ceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce--eeecCccceEEEEecCcEEEEecCCC-
Confidence 2222 24578999999997 57899999988 878764322211111 23456789999999999999999888
Q ss_pred EEEeeCCCCCCeeeeeeecCCCC------CeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717 365 VRIWQRGSDGRFGCLAVLEGHTK------PVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 365 i~iwd~~~~~~~~~~~~~~~h~~------~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
|+|||+..++. +..+..... --..+.|.++. .|+-|=.| +|+|..++
T Consensus 181 v~vyd~~~~~~---l~~i~~p~~~~R~e~fpphl~W~~~~------~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 181 VKVYDTPTRQR---LTNIPPPSQSVRPELFPPHLHWQDED------RLVIGWGD-SVKICSIK 233 (846)
T ss_pred cEEEeccccce---eeccCCCCCCCCcccCCCceEecCCC------eEEEecCC-eEEEEEEe
Confidence 99999998773 222222112 23467788776 46655444 89999988
No 303
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.78 E-value=2.6e-05 Score=78.30 Aligned_cols=236 Identities=14% Similarity=0.176 Sum_probs=150.8
Q ss_pred CcccEEEEEEeCCe--EEEEecCCeEEEE----eCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCc
Q 013717 141 SSGSVKSVTFCDGK--IFTAHQDCKIRVW----QLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDA 214 (437)
Q Consensus 141 h~~~v~~l~~~~~~--l~s~~~dg~i~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (437)
....|.++.+..+. ++.+..+|.|.+. +..+... .+...-...
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-------------------------------E~VG~vd~G 122 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-------------------------------EIVGSVDSG 122 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-------------------------------EEEEEEcCc
Confidence 45789999998554 8889999999999 4433321 111235678
Q ss_pred EEEEEeCC--CeEEEEECCCcEEEEECCCcceE------------------------EEeec------------------
Q 013717 215 VTGLAVNN--GLIYSVSWDKSLKIWRASDLRCL------------------------ESIKA------------------ 250 (437)
Q Consensus 215 v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~------------------------~~~~~------------------ 250 (437)
|.+++|+| ..++.++.++++.+.+- +.+.+ ..|++
T Consensus 123 I~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~ 201 (928)
T PF04762_consen 123 ILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKV 201 (928)
T ss_pred EEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCcc
Confidence 99999999 88888888888887642 21111 11100
Q ss_pred ------ccccEEEEEEecCCe-EEEEeC---C---CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC
Q 013717 251 ------HEDAVNAVAVSAGGT-VYTGSA---D---RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC 317 (437)
Q Consensus 251 ------~~~~v~~~~~~~~~~-l~~~~~---d---g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 317 (437)
..+.-..|+|-.||. +|+.+. . ..++||+-+ +.+....+.-.+--.+++|.|.|++||+...
T Consensus 202 d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-----G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~ 276 (928)
T PF04762_consen 202 DEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-----GELQSTSEPVDGLEGALSWRPSGNLIASSQR 276 (928)
T ss_pred ccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-----ceEEeccccCCCccCCccCCCCCCEEEEEEE
Confidence 222445788999998 666654 2 579999754 2333333333344457899999999998765
Q ss_pred ---CCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCC-CCCeeE
Q 013717 318 ---DRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGH-TKPVKS 391 (437)
Q Consensus 318 ---dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h-~~~v~~ 391 (437)
...|.+|.-. |-+...+.-.+......|..+.|+.+ .||..-.|. |.+|-..+-. |.+.+.+.-. ...+..
T Consensus 277 ~~~~~~VvFfErN-GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYH-WYLKqei~~~~~~~~~~ 353 (928)
T PF04762_consen 277 LPDRHDVVFFERN-GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYH-WYLKQEIRFSSSESVNF 353 (928)
T ss_pred cCCCcEEEEEecC-CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCE-EEEEEEEEccCCCCCCc
Confidence 3456777743 33333344444445667888888866 777766555 9999887644 4445555432 334566
Q ss_pred EEEEccCCCCceEEEEEecCCCcEEEEee
Q 013717 392 LTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420 (437)
Q Consensus 392 l~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 420 (437)
+.|+|..+. .|.....+|.+..+++
T Consensus 354 ~~Wdpe~p~----~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 354 VKWDPEKPL----RLHVLTSNGQYEIYDF 378 (928)
T ss_pred eEECCCCCC----EEEEEecCCcEEEEEE
Confidence 999998765 5666666677655443
No 304
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.76 E-value=4.7e-08 Score=56.48 Aligned_cols=38 Identities=42% Similarity=0.708 Sum_probs=36.1
Q ss_pred eeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEE
Q 013717 288 ALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD 325 (437)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 325 (437)
+++..+.+|...|.+|+|+|++++|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
No 305
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.75 E-value=4.4e-08 Score=56.61 Aligned_cols=38 Identities=32% Similarity=0.672 Sum_probs=35.4
Q ss_pred eeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEe
Q 013717 377 GCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ 419 (437)
Q Consensus 377 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~ 419 (437)
+++.++.+|.+.|++|+|+|++. +|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-----~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-----FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-----EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-----cceeeCCCCEEEEEC
Confidence 57899999999999999999974 899999999999997
No 306
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=3.3e-07 Score=79.47 Aligned_cols=269 Identities=15% Similarity=0.113 Sum_probs=171.2
Q ss_pred cccccccCCCceeEEecCCC--cceeeeec-CccCCeEEEEee--CCEEEEEec-C-eEEEEeCCCCceeeeeccccCCC
Q 013717 68 VPSLQKLSPDETINFSSASH--LCINSVQL-GHKLPIGCIAVH--HNFLYAASS-H-EINVYDRTGTTWTSINTFNDNDS 140 (437)
Q Consensus 68 ~~~~~s~s~dg~i~~~~~~~--~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~-d-~v~vwd~~~~~~~~~~~~~~~~~ 140 (437)
.+...+++.||.+.+|.... ....+..+ .|...|.+++.+ +.++.|.+. | .++++|+++-.......+ .-
T Consensus 20 a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL---~~ 96 (558)
T KOG0882|consen 20 AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKL---VD 96 (558)
T ss_pred hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccc---cc
Confidence 35677899999999998855 33444444 899999999988 778888777 8 999999988433322222 11
Q ss_pred CcccEEEEEEeCCe--EEE--EecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717 141 SSGSVKSVTFCDGK--IFT--AHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT 216 (437)
Q Consensus 141 h~~~v~~l~~~~~~--l~s--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 216 (437)
-.+.+..+.-.++. +++ .-.+|.+.++|-....+...... .-|..+|.
T Consensus 97 lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk----------------------------klH~sPV~ 148 (558)
T KOG0882|consen 97 LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK----------------------------KLHFSPVK 148 (558)
T ss_pred CCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec----------------------------ccccCceE
Confidence 22333322222322 332 34578899998765432222111 23899999
Q ss_pred EEEeCC--CeEEEEECCCcEEEEECCC------cceEEE---------eecccccEEEEEEecCCe-EEEEeCCCeEEEe
Q 013717 217 GLAVNN--GLIYSVSWDKSLKIWRASD------LRCLES---------IKAHEDAVNAVAVSAGGT-VYTGSADRKIRVW 278 (437)
Q Consensus 217 ~~~~~~--~~l~~~~~dg~i~iwd~~~------~~~~~~---------~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iw 278 (437)
++.+.+ +.+++....|.|.-|.... .+.... +...+....++.|+|++. +.+-..|..|+++
T Consensus 149 ~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F 228 (558)
T KOG0882|consen 149 KIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGF 228 (558)
T ss_pred EEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEE
Confidence 999998 8888888899999998872 111111 123456788999999999 8888899999999
Q ss_pred cCCCCccccee----------------------------eEEeeCccc-cEEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 013717 279 AKPFNEKRHAL----------------------------IATLEKHKS-AVNALALSDDGTVLFSGACDRSILVWDREDS 329 (437)
Q Consensus 279 d~~~~~~~~~~----------------------------~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 329 (437)
+..++...... .+.++.|.. .-+.+.|...|++|+-|+.=| |++.++.++
T Consensus 229 ~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn 307 (558)
T KOG0882|consen 229 VFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTN 307 (558)
T ss_pred EeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecC
Confidence 87654311100 001112222 235678999999999988776 889998876
Q ss_pred ccceEEeee----------e-------------cccccceEEEEeeCCEEEEEeCCCcEEEe
Q 013717 330 ANHMVVTGA----------L-------------RGHGKAILCLINVAGLLMSGSADRTVRIW 368 (437)
Q Consensus 330 ~~~~~~~~~----------~-------------~~~~~~i~~~~~~~~~l~~~~~dg~i~iw 368 (437)
.....+-.. + .+...+...+..++..++++-....+++|
T Consensus 308 ~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt~~c~a~kk~rfylf 369 (558)
T KOG0882|consen 308 TVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPTIVCTAFKKNRFYLF 369 (558)
T ss_pred eEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCeEEEeeeecceEEEE
Confidence 533322110 0 00111222333445577777778888888
No 307
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.67 E-value=0.00017 Score=61.76 Aligned_cols=209 Identities=13% Similarity=0.041 Sum_probs=126.3
Q ss_pred EEEee---CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEe-CCe-EEEEecCCeEEEEeCCCCcccc
Q 013717 103 CIAVH---HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC-DGK-IFTAHQDCKIRVWQLTPTKHHK 176 (437)
Q Consensus 103 ~l~~~---~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~-l~s~~~dg~i~iwd~~~~~~~~ 176 (437)
+.+|. +.++++--.+ .|..|+..++....... .....+++. ++. ++.+..++ +.++|..+++...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~--------~~~~G~~~~~~~g~l~v~~~~~-~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDL--------PGPNGMAFDRPDGRLYVADSGG-IAVVDPDTGKVTV 74 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEES--------SSEEEEEEECTTSEEEEEETTC-EEEEETTTTEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEec--------CCCceEEEEccCCEEEEEEcCc-eEEEecCCCcEEE
Confidence 45566 4555555556 99999999864333221 116777777 444 77776655 5556988775433
Q ss_pred cccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEE-CC--------CcEEEEECCCcceEE
Q 013717 177 LKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVS-WD--------KSLKIWRASDLRCLE 246 (437)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~-~d--------g~i~iwd~~~~~~~~ 246 (437)
....... .......+++++++ ..++.+. .. |.|..++.. ++...
T Consensus 75 ~~~~~~~-------------------------~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~ 128 (246)
T PF08450_consen 75 LADLPDG-------------------------GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV 128 (246)
T ss_dssp EEEEETT-------------------------CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE
T ss_pred EeeccCC-------------------------CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE
Confidence 3221100 00345678899988 4344443 22 557777776 44433
Q ss_pred EeecccccEEEEEEecCCe-E-EEEeCCCeEEEecCCCCcccc---eeeEEeeCccccEEEEEEccCCCEEEEEeCCCcE
Q 013717 247 SIKAHEDAVNAVAVSAGGT-V-YTGSADRKIRVWAKPFNEKRH---ALIATLEKHKSAVNALALSDDGTVLFSGACDRSI 321 (437)
Q Consensus 247 ~~~~~~~~v~~~~~~~~~~-l-~~~~~dg~v~iwd~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 321 (437)
.. ..-...+.|+|+|+++ | ++-+..+.|..|++....... .....+....+..-.+++..+|++.++....+.|
T Consensus 129 ~~-~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I 207 (246)
T PF08450_consen 129 VA-DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRI 207 (246)
T ss_dssp EE-EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEE
T ss_pred Ee-cCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEE
Confidence 33 3455678999999997 4 466778899999885433211 1222233333458899999999988888889999
Q ss_pred EEEECCCCccceEEeeeecccccceEEEEee
Q 013717 322 LVWDREDSANHMVVTGALRGHGKAILCLINV 352 (437)
Q Consensus 322 ~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~ 352 (437)
.++|.+ ++.... +.-....+++++|.
T Consensus 208 ~~~~p~-G~~~~~----i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 208 VVFDPD-GKLLRE----IELPVPRPTNCAFG 233 (246)
T ss_dssp EEEETT-SCEEEE----EE-SSSSEEEEEEE
T ss_pred EEECCC-ccEEEE----EcCCCCCEEEEEEE
Confidence 999987 543222 22223467788874
No 308
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.65 E-value=9.6e-05 Score=61.10 Aligned_cols=191 Identities=9% Similarity=0.109 Sum_probs=116.1
Q ss_pred CCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeec-------ccccEEEEEEecCC-------eEEEEeCCCeE
Q 013717 212 GDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKA-------HEDAVNAVAVSAGG-------TVYTGSADRKI 275 (437)
Q Consensus 212 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~v~~~~~~~~~-------~l~~~~~dg~v 275 (437)
...-..++|+| .+||.+...|+|++||+.. ..+..+.. ....|..|.|.+.. .|++-..+|.+
T Consensus 43 ~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L 121 (282)
T PF15492_consen 43 NPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQL 121 (282)
T ss_pred CchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEecccee
Confidence 34456789998 8889999999999999865 33444431 23456677665422 37788888888
Q ss_pred EEecCCCC-cccceeeEEee---CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEe
Q 013717 276 RVWAKPFN-EKRHALIATLE---KHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLIN 351 (437)
Q Consensus 276 ~iwd~~~~-~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 351 (437)
+-|-+... ....+....+. .+...|.++.++|..++|++|+.... +++. ..+....++++..
T Consensus 122 ~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~~--------s~a~~~GLtaWRi 187 (282)
T PF15492_consen 122 RSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDGM--------SKASSCGLTAWRI 187 (282)
T ss_pred eeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCcc--------ccccccCceEEEE
Confidence 88865322 12233333333 24678999999999888887765432 1100 0112233344433
Q ss_pred eC---CEE-EEEeCCCc------EEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717 352 VA---GLL-MSGSADRT------VRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 352 ~~---~~l-~~~~~dg~------i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
-. .+. ++...|+. ..+|.+-+.+ ...........|..|..+|++. +|++...+|.|.+|++.
T Consensus 188 L~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~---~fs~~~~~~d~i~kmSlSPdg~-----~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 188 LSDSPYYKQVTSSEDDITASSKRRGLLRIPSFK---FFSRQGQEQDGIFKMSLSPDGS-----LLACIHFSGSLSLWEIP 259 (282)
T ss_pred cCCCCcEEEccccCccccccccccceeecccee---eeeccccCCCceEEEEECCCCC-----EEEEEEcCCeEEEEecC
Confidence 21 122 22332322 1334333211 2222233567899999999995 89999999999999998
Q ss_pred cCCC
Q 013717 422 VSCP 425 (437)
Q Consensus 422 ~~~~ 425 (437)
+-..
T Consensus 260 sL~~ 263 (282)
T PF15492_consen 260 SLRL 263 (282)
T ss_pred cchh
Confidence 7654
No 309
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.65 E-value=2e-06 Score=81.33 Aligned_cols=186 Identities=10% Similarity=0.117 Sum_probs=131.6
Q ss_pred CCCeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCcccc
Q 013717 221 NNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSA 299 (437)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 299 (437)
.+..++.|+....+..+|+++.+..+...-..+.|+-|.. +++ +.+|...|+|.+-|.++. +.++++..|.+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~----~~iht~~aHs~s 219 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSF----ETIHTFDAHSGS 219 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcC----ceeeeeeccccc
Confidence 5577778888888999999998887776644545655554 556 899999999999977654 578899999999
Q ss_pred EEEEEEccCCCEEEEEeC---------CCcEEEEECCCCccceEEeeeecccccceEEEEeeC---CEEEEEeCCCcEEE
Q 013717 300 VNALALSDDGTVLFSGAC---------DRSILVWDREDSANHMVVTGALRGHGKAILCLINVA---GLLMSGSADRTVRI 367 (437)
Q Consensus 300 i~~~~~~~~~~~l~~~~~---------dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~dg~i~i 367 (437)
|.++.. .|+.|++++. |..|+|||++..+.... +.-+.++ .-+.+.+ ..+++++..|...+
T Consensus 220 iSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P----I~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~ 292 (1118)
T KOG1275|consen 220 ISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP----IQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQF 292 (1118)
T ss_pred eeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCC----cccccCc-hhhhhcccccceEEEEecccceee
Confidence 987666 4888988865 56789999986543221 2212221 2223333 38899999999999
Q ss_pred eeCCCCC-CeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 368 WQRGSDG-RFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 368 wd~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
-|..+-. ...-+.........+.++.++++++ .++-|..+|.|.+|. +.+.|
T Consensus 293 vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~-----alafgd~~g~v~~wa-~~~~P 345 (1118)
T KOG1275|consen 293 VDTATLSNPPAGVKMVNPNGSGISAFDISSNGD-----ALAFGDHEGHVNLWA-DRPQP 345 (1118)
T ss_pred ccccccCCCccceeEEccCCCcceeEEecCCCc-----eEEEecccCcEeeec-CCCCC
Confidence 9933221 1122333344455699999999885 799999999999998 44443
No 310
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=3.7e-05 Score=68.99 Aligned_cols=271 Identities=10% Similarity=0.119 Sum_probs=159.7
Q ss_pred EEEEee--CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEe-----------cCCeEEE
Q 013717 102 GCIAVH--HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAH-----------QDCKIRV 166 (437)
Q Consensus 102 ~~l~~~--~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~-----------~dg~i~i 166 (437)
+-+.|| |.||+|--..-|.+|--++ +..+..+ .| ..|.-+.|+|.. |+|=+ ....++|
T Consensus 214 tyv~wSP~GTYL~t~Hk~GI~lWGG~~--f~r~~RF----~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~I 286 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQGIALWGGES--FDRIQRF----YH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLII 286 (698)
T ss_pred eeEEecCCceEEEEEeccceeeecCcc--HHHHHhc----cC-CCceeeecCCccceEEEecCCccccCcccCCCceEEE
Confidence 456677 8999998888999998776 5666665 35 458889999775 76654 2257999
Q ss_pred EeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcce
Q 013717 167 WQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRC 244 (437)
Q Consensus 167 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~ 244 (437)
||+.+|...+.+..+... ...-++ +.|+. +++|--.. ..|.||+.....+
T Consensus 287 WDI~tG~lkrsF~~~~~~-------------------------~~~WP~--frWS~DdKy~Arm~~-~sisIyEtpsf~l 338 (698)
T KOG2314|consen 287 WDIATGLLKRSFPVIKSP-------------------------YLKWPI--FRWSHDDKYFARMTG-NSISIYETPSFML 338 (698)
T ss_pred EEccccchhcceeccCCC-------------------------ccccce--EEeccCCceeEEecc-ceEEEEecCceee
Confidence 999999876665533110 011122 34443 66665555 5799999877554
Q ss_pred EEEeecccccEEEEEEecCCe-EEEEeCC-----CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe--
Q 013717 245 LESIKAHEDAVNAVAVSAGGT-VYTGSAD-----RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA-- 316 (437)
Q Consensus 245 ~~~~~~~~~~v~~~~~~~~~~-l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-- 316 (437)
+..-...-..|....|+|.+. ||.-... ..+.+-.+... ..++.-.-++-.=..+-|-.+|.+|+.--
T Consensus 339 ld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~----~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR 414 (698)
T KOG2314|consen 339 LDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSK----REIRTKNLFNVSDCKLHWQKSGDYLCVKVDR 414 (698)
T ss_pred ecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCcc----ceeeeccceeeeccEEEeccCCcEEEEEEEe
Confidence 433333456788899999866 3322211 12333322211 12222222222223455666777776531
Q ss_pred --------CCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEEeC---CCcEEEeeCC-CCCCeeeeeee
Q 013717 317 --------CDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSGSA---DRTVRIWQRG-SDGRFGCLAVL 382 (437)
Q Consensus 317 --------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~---dg~i~iwd~~-~~~~~~~~~~~ 382 (437)
.-..+-|+.++....+... ..-...|..++|.|. .+++-+. ..++.+|.++ ....+.++..+
T Consensus 415 ~tK~~~~g~f~n~eIfrireKdIpve~----velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~ 490 (698)
T KOG2314|consen 415 HTKSKVKGQFSNLEIFRIREKDIPVEV----VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL 490 (698)
T ss_pred eccccccceEeeEEEEEeeccCCCcee----eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh
Confidence 1123455555433221111 123456777777654 3333322 3579999988 55555666666
Q ss_pred cCCCCCeeEEEEEccCCCCceEEEEEe---cCCCcEEEEeecc
Q 013717 383 EGHTKPVKSLTAVTEEGQNGVVSVFSG---SLDGEIRAWQVSV 422 (437)
Q Consensus 383 ~~h~~~v~~l~~~~~~~~~~~~~l~s~---~~dg~i~iw~~~~ 422 (437)
.. ...+.+.|+|.|. +++.+ |..|.+.++|.+.
T Consensus 491 dk--~~~N~vfwsPkG~-----fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 491 DK--KFANTVFWSPKGR-----FVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred cc--cccceEEEcCCCc-----EEEEEEecccccceEEEecch
Confidence 54 5578899999884 55554 4578999999884
No 311
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.61 E-value=0.00013 Score=68.82 Aligned_cols=278 Identities=16% Similarity=0.138 Sum_probs=150.2
Q ss_pred eeCCEEEEEecC-eEEEEeCCCCceeeeeccccC-CCCcccE--EEEEEeC-CeEEEEecCCeEEEEeCCCCcccccccc
Q 013717 106 VHHNFLYAASSH-EINVYDRTGTTWTSINTFNDN-DSSSGSV--KSVTFCD-GKIFTAHQDCKIRVWQLTPTKHHKLKTT 180 (437)
Q Consensus 106 ~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~-~~h~~~v--~~l~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 180 (437)
+.+..++.++.+ .|.-.|..+++..=....... ......+ ..+...+ +.++.++.++.|..+|.++++.......
T Consensus 59 v~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 59 VVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred EECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 336677777777 888899988643222211100 0000111 1233444 6788899999999999999886554432
Q ss_pred cCccccceeeecCCCCeeEEeeccceeeecCCCcEE-EEEeCCCeEEEEE---------CCCcEEEEECCCcceEEEeec
Q 013717 181 LPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT-GLAVNNGLIYSVS---------WDKSLKIWRASDLRCLESIKA 250 (437)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~ 250 (437)
..... ....+. ...+....++.++ .+|.+..+|..+++.+..+..
T Consensus 139 ~~~~~-------------------------~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 139 NDQVP-------------------------PGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred CCCcC-------------------------cceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 11000 000000 1112224455543 468899999999998887753
Q ss_pred ccc--------------------cE-EEEEEecC-CeEEEEeCCC------------------eEEEecCCCCcccceee
Q 013717 251 HED--------------------AV-NAVAVSAG-GTVYTGSADR------------------KIRVWAKPFNEKRHALI 290 (437)
Q Consensus 251 ~~~--------------------~v-~~~~~~~~-~~l~~~~~dg------------------~v~iwd~~~~~~~~~~~ 290 (437)
... .+ ...++.+. +.++.++.++ .|.-+|..+++..++..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~ 273 (488)
T cd00216 194 TEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQ 273 (488)
T ss_pred cCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEee
Confidence 211 01 12344433 4477777665 68888887766544321
Q ss_pred EEe------eCccccE-EEEEEccCCC---EEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEE-
Q 013717 291 ATL------EKHKSAV-NALALSDDGT---VLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSG- 359 (437)
Q Consensus 291 ~~~------~~~~~~i-~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~- 359 (437)
... .....++ ..+. .-+|. .+++++.+|.++.+|.++++......... ..+..+++.++.+
T Consensus 274 ~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~-------~~~~~~~~~vyv~~ 345 (488)
T cd00216 274 TTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE-------QPMAYDPGLVYLGA 345 (488)
T ss_pred CCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec-------cccccCCceEEEcc
Confidence 110 0011111 1111 11343 67888899999999999998766543220 1112223433332
Q ss_pred -----------------eCCCcEEEeeCCCCCCeeeeeeecCC--C------CCe--eEEEEEccCCCCceEEEEEecCC
Q 013717 360 -----------------SADRTVRIWQRGSDGRFGCLAVLEGH--T------KPV--KSLTAVTEEGQNGVVSVFSGSLD 412 (437)
Q Consensus 360 -----------------~~dg~i~iwd~~~~~~~~~~~~~~~h--~------~~v--~~l~~~~~~~~~~~~~l~s~~~d 412 (437)
..+|.+.-.|+.+++ .+-..... . .+. ..++... + +|+.++.|
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~---~~W~~~~~~~~~~~~~g~~~~~~~~~~~g-~------~v~~g~~d 415 (488)
T cd00216 346 FHIPLGLPPQKKKRCKKPGKGGLAALDPKTGK---VVWEKREGTIRDSWNIGFPHWGGSLATAG-N------LVFAGAAD 415 (488)
T ss_pred ccccccCcccccCCCCCCCceEEEEEeCCCCc---EeeEeeCCccccccccCCcccCcceEecC-C------eEEEECCC
Confidence 235778888888877 22222211 0 111 1122222 2 68888899
Q ss_pred CcEEEEeeccCCCC
Q 013717 413 GEIRAWQVSVSCPN 426 (437)
Q Consensus 413 g~i~iw~~~~~~~~ 426 (437)
|.|+.+|.++++..
T Consensus 416 G~l~ald~~tG~~l 429 (488)
T cd00216 416 GYFRAFDATTGKEL 429 (488)
T ss_pred CeEEEEECCCCcee
Confidence 99999999888753
No 312
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.60 E-value=0.00019 Score=58.52 Aligned_cols=108 Identities=11% Similarity=0.066 Sum_probs=72.7
Q ss_pred CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEE-eCCeEEEEecCCeEEEEeCCCCcccccccccCccc
Q 013717 108 HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTF-CDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVN 185 (437)
Q Consensus 108 ~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 185 (437)
..+++.|+.. .+.--|.++|+..-...+ ...|.+-+. .+|.++.|+..|.+.+.+.+++.+........
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~il------g~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~--- 93 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL------GVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE--- 93 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhh------CceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehh---
Confidence 4566666666 666677777644333222 334444333 47779999999999999999997655544321
Q ss_pred cceeeecCCCCeeEEeeccceeeecCCCcE-EEEEeCCCeEEEEECCCcEEEEECCCcceEEEeec
Q 013717 186 DRLLRFMLPNSYVTVRRHKKKLWIEHGDAV-TGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKA 250 (437)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 250 (437)
.-.+ ..++++...+..|+.|++.+..|.++..++...+.
T Consensus 94 --------------------------~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 94 --------------------------TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred --------------------------hhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence 1111 12445558999999999999999999888877653
No 313
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1.8e-05 Score=68.08 Aligned_cols=242 Identities=12% Similarity=0.100 Sum_probs=139.1
Q ss_pred CCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcE
Q 013717 139 DSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAV 215 (437)
Q Consensus 139 ~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 215 (437)
..|...|..++|+|.. +..++.+.+|+|.|+++........ .+ ..+
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~------------------------------a~-~~~ 238 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI------------------------------AY-NQI 238 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee------------------------------cc-CCc
Confidence 5688899999999643 7888999999999999875433332 23 788
Q ss_pred EEEEeCC---CeEEEEECCCcEEEEECCCcce-EEEee--cccccEEEEEEe------cCCeEEEEeCCCeEEEecCCCC
Q 013717 216 TGLAVNN---GLIYSVSWDKSLKIWRASDLRC-LESIK--AHEDAVNAVAVS------AGGTVYTGSADRKIRVWAKPFN 283 (437)
Q Consensus 216 ~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~-~~~~~--~~~~~v~~~~~~------~~~~l~~~~~dg~v~iwd~~~~ 283 (437)
++++|+- ++++.|..+|.|.|||++..+- +..+. ....+|..++.- +.+.++++... .+..|++...
T Consensus 239 wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt-~l~f~ei~~s 317 (463)
T KOG1645|consen 239 WSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT-VLQFYEIVFS 317 (463)
T ss_pred eeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh-hhhhhhhhcc
Confidence 9999975 8999999999999999986532 22221 123345444433 23334444433 3567766555
Q ss_pred cccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC-------cEEE-EECCCCccceEEeeeecc------ccc-ceEE
Q 013717 284 EKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR-------SILV-WDREDSANHMVVTGALRG------HGK-AILC 348 (437)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-------~i~i-~d~~~~~~~~~~~~~~~~------~~~-~i~~ 348 (437)
.....++..+. ..+...++.+.+-.+.++...... .|-. -|..++...........+ +.. .+..
T Consensus 318 ~~~~p~vlele-~pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~ 396 (463)
T KOG1645|consen 318 AECLPCVLELE-PPGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRA 396 (463)
T ss_pred ccCCCcccccC-CCcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceec
Confidence 44444433333 345566666666445544433320 0111 111222211111111100 111 1111
Q ss_pred EEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717 349 LINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 349 ~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
. .+.+ .+.+|...+.+.+||..+.+ .++++.- ..+|.++........ -||+.-. |..++||+-+.
T Consensus 397 ~-~~nn~iv~~gd~tn~lil~D~~s~e---vvQ~l~~-~epv~Dicp~~~n~~---syLa~LT-d~~v~Iyk~es 462 (463)
T KOG1645|consen 397 V-EDNNYIVVVGDSTNELILQDPHSFE---VVQTLAL-SEPVLDICPNDTNGS---SYLALLT-DDRVHIYKNES 462 (463)
T ss_pred c-ccccEEEEecCCcceeEEeccchhh---eeeeccc-CcceeecceeecCCc---chhhhee-cceEEEEecCC
Confidence 1 1123 55566777899999999876 6666653 378888876654322 3666665 45888887654
No 314
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=2.1e-05 Score=74.29 Aligned_cols=209 Identities=17% Similarity=0.269 Sum_probs=130.1
Q ss_pred cEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCc-EEEEEeCC
Q 013717 144 SVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDA-VTGLAVNN 222 (437)
Q Consensus 144 ~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~ 222 (437)
.|.|+.-+.+.++.|+.+|.|.+.+-.-. ....+. .+... |..+-...
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~-~~~~fq------------------------------a~~~siv~~L~~~~ 75 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSFQ-LIRGFQ------------------------------AYEQSIVQFLYILN 75 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEecccce-eeehhe------------------------------ecchhhhhHhhccc
Confidence 56665555566999999999888774321 111111 23333 44444433
Q ss_pred --CeEEEEECCCc-----EEEEECCCc------ceEEE--ee-----cccccEEEEEEecCCe-EEEEeCCCeEEEecCC
Q 013717 223 --GLIYSVSWDKS-----LKIWRASDL------RCLES--IK-----AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKP 281 (437)
Q Consensus 223 --~~l~~~~~dg~-----i~iwd~~~~------~~~~~--~~-----~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~ 281 (437)
++|++.+.|+. |+|||++.- +++.. +. ....++.+++++.+-. +|+|..+|.|..+.=+
T Consensus 76 ~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GD 155 (933)
T KOG2114|consen 76 KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGD 155 (933)
T ss_pred CceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCc
Confidence 57888877654 899998643 23311 11 1356788999998877 9999999999998422
Q ss_pred CCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--EEEEE
Q 013717 282 FNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMSG 359 (437)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~ 359 (437)
-.........-......+|+.+++..+++.++-...-..|.+|.+.... + ....+..|+....|.++++. .++++
T Consensus 156 i~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-p--~~~~ld~~G~~lnCss~~~~t~qfIca 232 (933)
T KOG2114|consen 156 ILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-P--SLKVLDNNGISLNCSSFSDGTYQFICA 232 (933)
T ss_pred chhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC-c--ceeeeccCCccceeeecCCCCccEEEe
Confidence 1111222222333456899999999998873333334579999998433 2 22335668888889888765 35555
Q ss_pred eCCCcEEEeeCCCCCCeeeeeeec-CCCCCee
Q 013717 360 SADRTVRIWQRGSDGRFGCLAVLE-GHTKPVK 390 (437)
Q Consensus 360 ~~dg~i~iwd~~~~~~~~~~~~~~-~h~~~v~ 390 (437)
+.. .+.+|+....+ +-..+. +|.....
T Consensus 233 ~~e-~l~fY~sd~~~---~cfaf~~g~kk~~~ 260 (933)
T KOG2114|consen 233 GSE-FLYFYDSDGRG---PCFAFEVGEKKEML 260 (933)
T ss_pred cCc-eEEEEcCCCcc---eeeeecCCCeEEEE
Confidence 544 59999988655 334444 6655443
No 315
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=1.4e-05 Score=75.44 Aligned_cols=205 Identities=14% Similarity=0.167 Sum_probs=134.1
Q ss_pred cEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEeeccccc-EEEEEEecCCe-EEEEeCCC-----eEEEecCCCCccc
Q 013717 214 AVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHEDA-VNAVAVSAGGT-VYTGSADR-----KIRVWAKPFNEKR 286 (437)
Q Consensus 214 ~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~~~-l~~~~~dg-----~v~iwd~~~~~~~ 286 (437)
.|.|+.-+...++.|+.+|.|.+++ +..+.++.++.+... |..+-...+.. |++.+.|+ .|++||+......
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 6777766669999999999999988 345566777777766 54444433323 66666654 5899998644221
Q ss_pred --ceee--EEeeC-----ccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--E
Q 013717 287 --HALI--ATLEK-----HKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--L 355 (437)
Q Consensus 287 --~~~~--~~~~~-----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~ 355 (437)
..++ ..+.. ...++.+++.+.+-+.+|+|-.||.|..+.-+-.+.......-...-..+|+.+.+..+ .
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS 185 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence 2233 11111 34678899999999999999999999998643211111111112234677888877643 3
Q ss_pred -EEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCCCC
Q 013717 356 -LMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPNSS 428 (437)
Q Consensus 356 -l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 428 (437)
+++++ ...|.+|.+.... .....+..|..+++|..+++..++ ++++++ ..|.+|+.+..+++..
T Consensus 186 ~lFv~T-t~~V~~y~l~gr~--p~~~~ld~~G~~lnCss~~~~t~q----fIca~~--e~l~fY~sd~~~~cfa 250 (933)
T KOG2114|consen 186 VLFVAT-TEQVMLYSLSGRT--PSLKVLDNNGISLNCSSFSDGTYQ----FICAGS--EFLYFYDSDGRGPCFA 250 (933)
T ss_pred eEEEEe-cceeEEEEecCCC--cceeeeccCCccceeeecCCCCcc----EEEecC--ceEEEEcCCCcceeee
Confidence 33333 4469999998433 345668888889999999987753 444443 3799999887666543
No 316
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.52 E-value=0.00015 Score=65.60 Aligned_cols=250 Identities=13% Similarity=0.148 Sum_probs=125.6
Q ss_pred cEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeee---cCCCCeeEE----------eeccceee
Q 013717 144 SVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRF---MLPNSYVTV----------RRHKKKLW 208 (437)
Q Consensus 144 ~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----------~~~~~~~~ 208 (437)
.|+.+.|.++. |+.+...|.|.+|.....+........+..+.....+ ..+.....+ .......+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 57888898654 9999999999999887654332000000000000000 001111111 12223344
Q ss_pred ecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEee--c------ccccEEEEEEe-----cCCe----EEEEe
Q 013717 209 IEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIK--A------HEDAVNAVAVS-----AGGT----VYTGS 270 (437)
Q Consensus 209 ~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~--~------~~~~v~~~~~~-----~~~~----l~~~~ 270 (437)
....++|++++.+. .+++.|+.+|.+.|.|++....+..-. . ....++++.|. .|+. +++|+
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT 162 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT 162 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence 55689999999998 999999999999999998887776633 1 23468888876 2442 89999
Q ss_pred CCCeEEEecCCC-Ccccce--eeEEeeCccccEEEEE-EccC-----------------C---CEEEEEeCCCcEEEEEC
Q 013717 271 ADRKIRVWAKPF-NEKRHA--LIATLEKHKSAVNALA-LSDD-----------------G---TVLFSGACDRSILVWDR 326 (437)
Q Consensus 271 ~dg~v~iwd~~~-~~~~~~--~~~~~~~~~~~i~~~~-~~~~-----------------~---~~l~~~~~dg~i~i~d~ 326 (437)
..|.+.+|.+.- ....+. .......+.++|..+. |+.+ | .-++....+..++++..
T Consensus 163 n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~ 242 (395)
T PF08596_consen 163 NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKP 242 (395)
T ss_dssp TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-T
T ss_pred CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeC
Confidence 999999998752 111111 1112223556665555 3211 1 12334445677999998
Q ss_pred CCCccceEEeeeecc-cccceEEEE-----eeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCC----CCCeeEEEEEc
Q 013717 327 EDSANHMVVTGALRG-HGKAILCLI-----NVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGH----TKPVKSLTAVT 396 (437)
Q Consensus 327 ~~~~~~~~~~~~~~~-~~~~i~~~~-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h----~~~v~~l~~~~ 396 (437)
.+.+...+. +.. ......++. ..+..|++-..+|.|++|.+..-+ .+..+.-. ...+....+++
T Consensus 243 ~~~k~~~K~---~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk---ei~~~~l~~~~d~~~~~~ssis~ 316 (395)
T PF08596_consen 243 PKSKGAHKS---FDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK---EIKSVSLPPPLDSRRLSSSSISR 316 (395)
T ss_dssp T---EEEEE----SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT-----EEEEEE-SS---HHHHTT-EE-T
T ss_pred CCCccccee---eccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch---HhhcccCCCccccccccccEECC
Confidence 765533222 111 111112221 134488888999999999999865 34333322 22355566677
Q ss_pred cCC
Q 013717 397 EEG 399 (437)
Q Consensus 397 ~~~ 399 (437)
+++
T Consensus 317 ~Gd 319 (395)
T PF08596_consen 317 NGD 319 (395)
T ss_dssp TS-
T ss_pred CCC
Confidence 764
No 317
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.51 E-value=0.00019 Score=66.06 Aligned_cols=190 Identities=11% Similarity=0.078 Sum_probs=111.1
Q ss_pred cEEEEEeCC--C-eEEEEEC---CCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EE-EEeCC--CeEEEecCCCC
Q 013717 214 AVTGLAVNN--G-LIYSVSW---DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VY-TGSAD--RKIRVWAKPFN 283 (437)
Q Consensus 214 ~v~~~~~~~--~-~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~-~~~~d--g~v~iwd~~~~ 283 (437)
.+..-.|+| + .++..+. +..|.++|+.+++...... ..+......|+|||+ ++ +.+.+ ..|.++|+..+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 666788888 4 3554433 3569999998887654433 555667788999997 44 44434 46777776543
Q ss_pred cccceeeEEeeCccccEEEEEEccCCCEEEEEeC-CC--cEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEe
Q 013717 284 EKRHALIATLEKHKSAVNALALSDDGTVLFSGAC-DR--SILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGS 360 (437)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~ 360 (437)
. ...+..+........|+|||+.|+..+. .+ .|+++|+.+++..... ..+.. ...++++++.|+...
T Consensus 268 ~-----~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt---~~g~~--~~~~SPDG~~Ia~~~ 337 (419)
T PRK04043 268 T-----LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV---FHGKN--NSSVSTYKNYIVYSS 337 (419)
T ss_pred c-----EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc---cCCCc--CceECCCCCEEEEEE
Confidence 2 2223333333345679999997776653 23 6888888776532211 11211 236667777665554
Q ss_pred CC---------CcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCc--EEEEeeccC
Q 013717 361 AD---------RTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGE--IRAWQVSVS 423 (437)
Q Consensus 361 ~d---------g~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~--i~iw~~~~~ 423 (437)
.. ..|.+.|+.++. ...+... .......|+|++.. ++++....+. +.+.+++..
T Consensus 338 ~~~~~~~~~~~~~I~v~d~~~g~----~~~LT~~-~~~~~p~~SPDG~~----I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 338 RETNNEFGKNTFNLYLISTNSDY----IRRLTAN-GVNQFPRFSSDGGS----IMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred cCCCcccCCCCcEEEEEECCCCC----eEECCCC-CCcCCeEECCCCCE----EEEEEccCCcEEEEEEecCCC
Confidence 43 367888888765 2233322 22335789999863 4455444444 445555543
No 318
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.48 E-value=6e-05 Score=69.74 Aligned_cols=140 Identities=14% Similarity=0.205 Sum_probs=92.0
Q ss_pred eEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCCccccc
Q 013717 101 IGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKL 177 (437)
Q Consensus 101 V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~ 177 (437)
-+|++..+++++.|+.- .+.+|+..++....... .+-.+.+..+..+++. ++.|+..|.|.++.++.......
T Consensus 38 lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~----~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 38 LTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKN----EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred EEEeecCCceEEEecccceEEEEecCchhhhcccc----cCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 45666669999999988 99999999875544443 2334445555566433 78888899999998876432211
Q ss_pred ccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCc----ceEEEeecc
Q 013717 178 KTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDL----RCLESIKAH 251 (437)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~ 251 (437)
...-+ .. ..|...|++++|++ ..+++|...|+|..-.+... -..+.+-..
T Consensus 114 ~~~t~--------------------~d----~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ 169 (726)
T KOG3621|consen 114 DYVTP--------------------CD----KSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSE 169 (726)
T ss_pred eeecc--------------------cc----ccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeecc
Confidence 11000 00 13889999999998 89999999999999888762 112233345
Q ss_pred cccEEEEEEecCCeEEEE
Q 013717 252 EDAVNAVAVSAGGTVYTG 269 (437)
Q Consensus 252 ~~~v~~~~~~~~~~l~~~ 269 (437)
...|..+.+. ++.++++
T Consensus 170 ds~IVQlD~~-q~~LLVS 186 (726)
T KOG3621|consen 170 DSEIVQLDYL-QSYLLVS 186 (726)
T ss_pred CcceEEeecc-cceehHh
Confidence 5677777765 3443333
No 319
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.45 E-value=0.00098 Score=61.00 Aligned_cols=90 Identities=18% Similarity=0.185 Sum_probs=68.1
Q ss_pred EEEECCCcceE--EEee-cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCC
Q 013717 235 KIWRASDLRCL--ESIK-AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGT 310 (437)
Q Consensus 235 ~iwd~~~~~~~--~~~~-~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 310 (437)
.+|++...+.. .... .....|.+.+++|+.. ++.|+.||.|.+||..... ..+....-.++.++|+|+|.
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~------t~~~ka~~~P~~iaWHp~ga 312 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGV------TLLAKAEFIPTLIAWHPDGA 312 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCe------eeeeeecccceEEEEcCCCc
Confidence 45666544322 1111 4677899999999988 9999999999999976442 12223445678999999999
Q ss_pred EEEEEeCCCcEEEEECCCCc
Q 013717 311 VLFSGACDRSILVWDREDSA 330 (437)
Q Consensus 311 ~l~~~~~dg~i~i~d~~~~~ 330 (437)
.+++|+..|.+.+||+.-..
T Consensus 313 i~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 313 IFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEEEcCCceEEEEEeecCc
Confidence 99999999999999987543
No 320
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=2.4e-07 Score=87.09 Aligned_cols=197 Identities=15% Similarity=0.134 Sum_probs=131.7
Q ss_pred ccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEE-EeCCC-eEEE
Q 013717 203 HKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYT-GSADR-KIRV 277 (437)
Q Consensus 203 ~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~-~~~dg-~v~i 277 (437)
..-+.+..|....+|++|+. ++|+.|+..|.|++|++.+|........|...|+.+.-+.+|. +++ .+... -..+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 33455677889999999998 9999999999999999999999999999999999999998987 433 33333 5779
Q ss_pred ecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC--E
Q 013717 278 WAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG--L 355 (437)
Q Consensus 278 wd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~ 355 (437)
|++.. .....+.+. .-.++.|+.....-+.|+......+||+.++.....+.....+....-.+..|++. +
T Consensus 1172 W~~~s---~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1172 WDASS---TGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred hcccc---ccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence 98753 223333443 23567888765555566666779999999886655543333332333345555554 5
Q ss_pred EEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 356 LMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 356 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
++ .|| .+||++..+ .+..+......+.+ .|+|.+.+ ++.-+ -|||+++-+.
T Consensus 1245 Il---ndG--vLWDvR~~~---aIh~FD~ft~~~~G-~FHP~g~e-----VIINS-----EIwD~RTF~l 1295 (1516)
T KOG1832|consen 1245 IL---NDG--VLWDVRIPE---AIHRFDQFTDYGGG-GFHPSGNE-----VIINS-----EIWDMRTFKL 1295 (1516)
T ss_pred Ee---eCc--eeeeeccHH---HHhhhhhheecccc-cccCCCce-----EEeec-----hhhhhHHHHH
Confidence 44 455 579998765 44444433322222 38888864 44333 3777776543
No 321
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.7e-05 Score=68.27 Aligned_cols=117 Identities=17% Similarity=0.174 Sum_probs=83.8
Q ss_pred eeecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEecCC
Q 013717 207 LWIEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKP 281 (437)
Q Consensus 207 ~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~ 281 (437)
++.+|...|.+++|+| .++..++.+.+|+|.|+++...+..+..+ ..+++++|.-|.. +..|-..|.|.+||++
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 3456888999999999 57899999999999999999888888766 7899999998777 8888899999999998
Q ss_pred CCcccceeeEEeeC--ccccEEEEE------EccCCCEEEEEeCCCcEEEEECCCC
Q 013717 282 FNEKRHALIATLEK--HKSAVNALA------LSDDGTVLFSGACDRSILVWDREDS 329 (437)
Q Consensus 282 ~~~~~~~~~~~~~~--~~~~i~~~~------~~~~~~~l~~~~~dg~i~i~d~~~~ 329 (437)
...... ..+.+ ...+|..++ ..+.|.+|+....+ +..|++...
T Consensus 267 ~~~~~~---~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s 317 (463)
T KOG1645|consen 267 QPEGPL---MELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFS 317 (463)
T ss_pred CCCchH---hhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhcc
Confidence 654321 11111 223343333 23345566555543 566766543
No 322
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.30 E-value=2.3e-07 Score=84.04 Aligned_cols=201 Identities=14% Similarity=0.129 Sum_probs=129.2
Q ss_pred CCcEEEEEeCC----CeEEEEECCCcEEEEECCCcceE--EEeecccccEEEEEEecCCe--EEEEe----CCCeEEEec
Q 013717 212 GDAVTGLAVNN----GLIYSVSWDKSLKIWRASDLRCL--ESIKAHEDAVNAVAVSAGGT--VYTGS----ADRKIRVWA 279 (437)
Q Consensus 212 ~~~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~--l~~~~----~dg~v~iwd 279 (437)
...+.|++..- ..++.|..+|.|.+-..+...-. ....++....++++|++-.. ||+|- .|-.+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34566666543 57888999999999887654332 23346788899999998644 66653 256799999
Q ss_pred CCCCcccceeeEEeeC-ccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCc-cceEEeeeecccccceEEEE-eeCCEE
Q 013717 280 KPFNEKRHALIATLEK-HKSAVNALALSDDGTVLFSGACDRSILVWDREDSA-NHMVVTGALRGHGKAILCLI-NVAGLL 356 (437)
Q Consensus 280 ~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~i~~~~-~~~~~l 356 (437)
+...-...+.-..+.. ......+++|..+.+++.+|.....++++|++..- ....+.. +.|.+ ..+. |.++++
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnT--k~vqG--~tVdp~~~nY~ 211 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNT--KYVQG--ITVDPFSPNYF 211 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhh--hhccc--ceecCCCCCce
Confidence 8765222121122222 33455688999899999999999999999998321 1111111 11222 1222 356787
Q ss_pred EEEeCCCcEEEeeC-CCCCCeeeeeeecCCCC----CeeEEEEEccCCCCceEEEEEecCC-CcEEEEeeccC
Q 013717 357 MSGSADRTVRIWQR-GSDGRFGCLAVLEGHTK----PVKSLTAVTEEGQNGVVSVFSGSLD-GEIRAWQVSVS 423 (437)
Q Consensus 357 ~~~~~dg~i~iwd~-~~~~~~~~~~~~~~h~~----~v~~l~~~~~~~~~~~~~l~s~~~d-g~i~iw~~~~~ 423 (437)
++-. ||.|.+||. ..-+ .++..+..... .+..++|+|.... ++++...| ++|+++++..-
T Consensus 212 cs~~-dg~iAiwD~~rnie--npl~~i~~~~N~~~~~l~~~aycPtrtg----lla~l~RdS~tIrlydi~~v 277 (783)
T KOG1008|consen 212 CSNS-DGDIAIWDTYRNIE--NPLQIILRNENKKPKQLFALAYCPTRTG----LLAVLSRDSITIRLYDICVV 277 (783)
T ss_pred eccc-cCceeeccchhhhc--cHHHHHhhCCCCcccceeeEEeccCCcc----hhhhhccCcceEEEeccccc
Confidence 7665 999999993 3322 23444433333 4999999998765 56666655 78999998654
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.28 E-value=0.0006 Score=67.38 Aligned_cols=277 Identities=12% Similarity=0.104 Sum_probs=141.8
Q ss_pred cCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCC
Q 013717 98 KLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPT 172 (437)
Q Consensus 98 ~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~ 172 (437)
.+.|.++.|. ++.++.+..+ .|.+-|..+..+..... -...|.+++|+++. ++..+.++++.+-.- +-
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~------vd~GI~aaswS~Dee~l~liT~~~tll~mT~-~f 140 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGN------VDNGISAASWSPDEELLALITGRQTLLFMTK-DF 140 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeee------ccCceEEEeecCCCcEEEEEeCCcEEEEEec-cc
Confidence 3689999998 5555555555 77777988866655554 46899999999887 666666677765432 11
Q ss_pred cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEeecc
Q 013717 173 KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIKAH 251 (437)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 251 (437)
..+..... .... ...+..-.+-|.. ..-+-|+ .|.....+....+........
T Consensus 141 ~~i~E~~L-~~d~------------------------~~~sk~v~VGwGrkeTqfrgs-~gr~~~~~~~~~ek~~~~~~~ 194 (1265)
T KOG1920|consen 141 EPIAEKPL-DADD------------------------ERKSKFVNVGWGRKETQFRGS-EGRQAARQKIEKEKALEQIEQ 194 (1265)
T ss_pred cchhcccc-cccc------------------------ccccccceecccccceeeecc-hhhhcccccccccccccchhh
Confidence 11111000 0000 0011111122211 1111111 111111111100000000011
Q ss_pred cccEEEEEEecCCe-EEEE----eCC-CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe---CCCcEE
Q 013717 252 EDAVNAVAVSAGGT-VYTG----SAD-RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA---CDRSIL 322 (437)
Q Consensus 252 ~~~v~~~~~~~~~~-l~~~----~~d-g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~ 322 (437)
.+.=+.|.|--||. +++. -.+ ..|++||.. +. +-..-....+.=.+++|-|.|..+++-. .|+.|.
T Consensus 195 ~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~----Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~Iv 269 (1265)
T KOG1920|consen 195 DDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GA----LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIV 269 (1265)
T ss_pred ccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-ch----hhcccCcccccccceeecCCCCeEeeeeecCCCCcEE
Confidence 22334688988997 5542 223 899999865 11 1111122233446799999999988753 366799
Q ss_pred EEECCCCccceEEeeeecccccceEEEEeeCC--EEEE---EeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEcc
Q 013717 323 VWDREDSANHMVVTGALRGHGKAILCLINVAG--LLMS---GSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTE 397 (437)
Q Consensus 323 i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~---~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 397 (437)
+|.-+.. ....+...+......+..+.|+.+ .|++ ......|++|-+.+-. |.+...+.-..... +.|+|.
T Consensus 270 ffErNGL-~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh-WYLKq~l~~~~~~~--~~W~p~ 345 (1265)
T KOG1920|consen 270 FFERNGL-RHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH-WYLKQELQFSQKAL--LMWDPV 345 (1265)
T ss_pred EEecCCc-cccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE-EEEEEEEecccccc--ccccCC
Confidence 9985543 222233334444455788888755 6665 4444459999887643 33444444332222 667775
Q ss_pred CCCCceEEEEEecCCCcEEEEee
Q 013717 398 EGQNGVVSVFSGSLDGEIRAWQV 420 (437)
Q Consensus 398 ~~~~~~~~l~s~~~dg~i~iw~~ 420 (437)
... .+.+. ..+|...++++
T Consensus 346 ~~~---~L~v~-~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 346 TEK---TLHVL-RESGQRLVRDF 364 (1265)
T ss_pred Cce---eEEEE-ecCCcEEEEEE
Confidence 543 23333 35555555443
No 324
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.26 E-value=0.00089 Score=59.77 Aligned_cols=179 Identities=16% Similarity=0.260 Sum_probs=114.1
Q ss_pred CcEEEEECCCcceEEEee-cccccEEEEEEe---cC----Ce-EEEEeC----------CCeEEEecCCCCc---cccee
Q 013717 232 KSLKIWRASDLRCLESIK-AHEDAVNAVAVS---AG----GT-VYTGSA----------DRKIRVWAKPFNE---KRHAL 289 (437)
Q Consensus 232 g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~---~~----~~-l~~~~~----------dg~v~iwd~~~~~---~~~~~ 289 (437)
..|++.|..+.+.+..+. .....+.+++.. .+ .. +++|+. .|.|.+|++.... ...+.
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 468999998888877665 234445655543 22 23 676654 2899999987631 12233
Q ss_pred eEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEee
Q 013717 290 IATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQ 369 (437)
Q Consensus 290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd 369 (437)
+... ...++|++++-. +| +|+++. ++.|++|++...+ .......+. ....+.++...+++++.|.....+.++.
T Consensus 82 i~~~-~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~-~l~~~~~~~-~~~~i~sl~~~~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 82 IHST-EVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSK-TLLKKAFYD-SPFYITSLSVFKNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEE-EESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTS-SEEEEEEE--BSSSEEEEEEETTEEEEEESSSSEEEEE
T ss_pred EEEE-eecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcc-cchhhheec-ceEEEEEEeccccEEEEEEcccCEEEEE
Confidence 3333 357889998877 44 455443 5789999998766 122222222 3447889999999999999988899886
Q ss_pred CCCCC-CeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717 370 RGSDG-RFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 370 ~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
..... ....+.. ......++++.+.++++ .++.+..+|.|.++....
T Consensus 156 ~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~-----~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 156 YDEENNKLILVAR-DYQPRWVTAAEFLVDED-----TIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EETTTE-EEEEEE-ESS-BEEEEEEEE-SSS-----EEEEEETTSEEEEEEE-S
T ss_pred EEccCCEEEEEEe-cCCCccEEEEEEecCCc-----EEEEEcCCCeEEEEEECC
Confidence 55422 1333332 22345688998986653 699999999999999874
No 325
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.26 E-value=0.0006 Score=58.24 Aligned_cols=200 Identities=16% Similarity=0.141 Sum_probs=121.8
Q ss_pred EEEeCC---CeEEEEECCCc-EEEEECCCcceEEEeecccccEE--EEEEecCCe-EEEEe-----CCCeEEEecCCCCc
Q 013717 217 GLAVNN---GLIYSVSWDKS-LKIWRASDLRCLESIKAHEDAVN--AVAVSAGGT-VYTGS-----ADRKIRVWAKPFNE 284 (437)
Q Consensus 217 ~~~~~~---~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~v~--~~~~~~~~~-l~~~~-----~dg~v~iwd~~~~~ 284 (437)
.++.+| ..++.+-.-|+ ..+||.++++....+....+.-. .-.|++||+ |++.- ..|.|-|||..
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~--- 85 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA--- 85 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc---
Confidence 445555 44555555544 67899999988877764333221 356999999 55532 35899999986
Q ss_pred ccceeeEEeeCccccEEEEEEccCCCEEEEEeC------------------CCcEEEEECCCCccceEEeeeecccccce
Q 013717 285 KRHALIATLEKHKSAVNALALSDDGTVLFSGAC------------------DRSILVWDREDSANHMVVTGALRGHGKAI 346 (437)
Q Consensus 285 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------------------dg~i~i~d~~~~~~~~~~~~~~~~~~~~i 346 (437)
.....+.++..+.-....+.+.|||+.|+++.. +-.+...|..+++......-...-|...+
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSi 165 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSI 165 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccce
Confidence 234567778878777888999999988877632 22344555555543322221113356667
Q ss_pred EEEEeeCC-EEEEEe-CCC-------cEEEeeCCCCCCeeeee----eecCCCCCeeEEEEEccCCCCceEEEEEecCCC
Q 013717 347 LCLINVAG-LLMSGS-ADR-------TVRIWQRGSDGRFGCLA----VLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDG 413 (437)
Q Consensus 347 ~~~~~~~~-~l~~~~-~dg-------~i~iwd~~~~~~~~~~~----~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg 413 (437)
..++.+++ .++.|. ..| -|.+++.... ...+. ....-.+.|-+|+++.++.. +.+|+=.-|
T Consensus 166 RHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~----ia~tsPrGg 239 (305)
T PF07433_consen 166 RHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRL----IAVTSPRGG 239 (305)
T ss_pred eeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCE----EEEECCCCC
Confidence 77776655 333332 222 1333333221 11111 12234567899999998763 667777889
Q ss_pred cEEEEeeccCCC
Q 013717 414 EIRAWQVSVSCP 425 (437)
Q Consensus 414 ~i~iw~~~~~~~ 425 (437)
.+.+||..++..
T Consensus 240 ~~~~~d~~tg~~ 251 (305)
T PF07433_consen 240 RVAVWDAATGRL 251 (305)
T ss_pred EEEEEECCCCCE
Confidence 999999988864
No 326
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.24 E-value=0.0011 Score=61.16 Aligned_cols=186 Identities=7% Similarity=0.000 Sum_probs=103.4
Q ss_pred cEEEEEEeCCe---EEEEec---CCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEE
Q 013717 144 SVKSVTFCDGK---IFTAHQ---DCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTG 217 (437)
Q Consensus 144 ~v~~l~~~~~~---l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 217 (437)
.+..-.|+|+. ++..+. +..|.++|+.+++...... ..+....
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-------------------------------~~g~~~~ 237 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-------------------------------SQGMLVV 237 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-------------------------------CCCcEEe
Confidence 67788999764 443333 3568888988775433221 2333445
Q ss_pred EEeCC--CeEE-EEECC--CcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEe-CCC--eEEEecCCCCcccce
Q 013717 218 LAVNN--GLIY-SVSWD--KSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGS-ADR--KIRVWAKPFNEKRHA 288 (437)
Q Consensus 218 ~~~~~--~~l~-~~~~d--g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~-~dg--~v~iwd~~~~~~~~~ 288 (437)
..|+| +.++ +.+.+ ..|.++|+.+++. ..+..+........|+|||+ |+..+ ..| .|.+.|+..+.. +
T Consensus 238 ~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~ 314 (419)
T PRK04043 238 SDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV--E 314 (419)
T ss_pred eEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe--E
Confidence 56777 3444 34333 5688889877764 33443333344568999998 55544 334 466666654331 1
Q ss_pred eeEEeeCccccEEEEEEccCCCEEEEEeCC---------CcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEE
Q 013717 289 LIATLEKHKSAVNALALSDDGTVLFSGACD---------RSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSG 359 (437)
Q Consensus 289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~ 359 (437)
.+ ...+. . ...|+|||++|+..... ..|.+.|+.++... .+.. .+ ...-..+++++..|+..
T Consensus 315 rl-t~~g~--~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~--~~-~~~~p~~SPDG~~I~f~ 385 (419)
T PRK04043 315 QV-VFHGK--N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTA--NG-VNQFPRFSSDGGSIMFI 385 (419)
T ss_pred eC-ccCCC--c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCC--CC-CcCCeEECCCCCEEEEE
Confidence 11 11111 1 24899999988876653 36888898776432 1211 11 12234566667655544
Q ss_pred eCC-C--cEEEeeCCC
Q 013717 360 SAD-R--TVRIWQRGS 372 (437)
Q Consensus 360 ~~d-g--~i~iwd~~~ 372 (437)
..+ + .+.+.++..
T Consensus 386 ~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 386 KYLGNQSALGIIRLNY 401 (419)
T ss_pred EccCCcEEEEEEecCC
Confidence 432 2 355666654
No 327
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.24 E-value=0.004 Score=57.16 Aligned_cols=141 Identities=11% Similarity=0.069 Sum_probs=85.1
Q ss_pred EEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC-
Q 013717 276 RVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG- 354 (437)
Q Consensus 276 ~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~- 354 (437)
.+|++..+......+..+ ...+.+.+.+++|+...|+.|+.||.|.+||...+..... ...-....++|+++
T Consensus 239 ciYE~~r~klqrvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~------ka~~~P~~iaWHp~g 311 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSI-PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA------KAEFIPTLIAWHPDG 311 (545)
T ss_pred EEEEeecCceeEEEEEEE-ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee------eecccceEEEEcCCC
Confidence 356654433222222233 4678899999999999999999999999999876532211 12334456666555
Q ss_pred -EEEEEeCCCcEEEeeCCCCCC--------e--ee---eeeecCCCCCeeEEEEEccCCC--------CceEEEEEecCC
Q 013717 355 -LLMSGSADRTVRIWQRGSDGR--------F--GC---LAVLEGHTKPVKSLTAVTEEGQ--------NGVVSVFSGSLD 412 (437)
Q Consensus 355 -~l~~~~~dg~i~iwd~~~~~~--------~--~~---~~~~~~h~~~v~~l~~~~~~~~--------~~~~~l~s~~~d 412 (437)
++++|+..|.+.+||+.-..- . .. +...-.+...+..+.|.+.... .....|+-.-+.
T Consensus 312 ai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P~~~L~Ls~yf~~~~~L~~iqW~~~~~~~~~~~~~~~~~~~L~l~f~~ 391 (545)
T PF11768_consen 312 AIFVVGSEQGELQCFDMALSPIKMQLLSEDATPKSTLQLSKYFRVSSSLVHIQWAPAPQLSSQGEFYADTYDLLLLVFER 391 (545)
T ss_pred cEEEEEcCCceEEEEEeecCccceeeccccCCCccEEeeehhccCcchhheeEeccCCCccccCCCcCCccceEEEEEcC
Confidence 999999999999999754320 0 11 1112234556778888843210 011234444445
Q ss_pred CcEEEEeeccC
Q 013717 413 GEIRAWQVSVS 423 (437)
Q Consensus 413 g~i~iw~~~~~ 423 (437)
|=+-+-.+..|
T Consensus 392 GPl~vl~~~~G 402 (545)
T PF11768_consen 392 GPLAVLRFKLG 402 (545)
T ss_pred CCeEEEEEeec
Confidence 55555555444
No 328
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.19 E-value=1.4e-06 Score=79.13 Aligned_cols=244 Identities=18% Similarity=0.216 Sum_probs=147.4
Q ss_pred CcccEEEEEEe--CCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEE
Q 013717 141 SSGSVKSVTFC--DGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVT 216 (437)
Q Consensus 141 h~~~v~~l~~~--~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 216 (437)
....+.|+++. .++ ++.|..+|.|.+-.++...... ..+..++..+++
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs----------------------------~E~tp~~ar~Ct 106 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSS----------------------------AEVTPGYARPCT 106 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCccccc----------------------------ceeccccccccc
Confidence 34556677765 333 7788889999998877543220 112235788999
Q ss_pred EEEeCC---CeEEEEE----CCCcEEEEECCCc--ceEEE--ee-cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCC
Q 013717 217 GLAVNN---GLIYSVS----WDKSLKIWRASDL--RCLES--IK-AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFN 283 (437)
Q Consensus 217 ~~~~~~---~~l~~~~----~dg~i~iwd~~~~--~~~~~--~~-~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~ 283 (437)
+++|++ +.||+|- .|..+.|||+.++ .+... +. +......+++|..+.+ +++|.....++++|++..
T Consensus 107 ~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs 186 (783)
T KOG1008|consen 107 SLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS 186 (783)
T ss_pred ccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhh
Confidence 999998 6777763 4678999999876 22221 21 1334566888887777 888888889999999854
Q ss_pred cccceeeEEeeCccccEEEEEEcc-CCCEEEEEeCCCcEEEEE-CCCCccceEE-eeeecccccceEEEEeeCC---EEE
Q 013717 284 EKRHALIATLEKHKSAVNALALSD-DGTVLFSGACDRSILVWD-REDSANHMVV-TGALRGHGKAILCLINVAG---LLM 357 (437)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d-~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~---~l~ 357 (437)
......+ ....+..+...| .++|+++-. ||.|.+|| .+.-+..... ..........+..+++.+. .++
T Consensus 187 ~~~~~sv-----nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla 260 (783)
T KOG1008|consen 187 LDSVSSV-----NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLA 260 (783)
T ss_pred hhhhhhh-----hhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhh
Confidence 3222221 233566677788 677887765 99999999 4332222211 1111112234777887765 666
Q ss_pred EEeCC-CcEEEeeCCCCCC--------eeeeee---ecC--CCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeec
Q 013717 358 SGSAD-RTVRIWQRGSDGR--------FGCLAV---LEG--HTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 358 ~~~~d-g~i~iwd~~~~~~--------~~~~~~---~~~--h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
+...| ++|+++|+..... ...... ++. ..+.|.+..|++..+. ...+.+-..-.+.-+++.
T Consensus 261 ~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~wH~~s~~---er~il~~~nl~~~Df~V~ 335 (783)
T KOG1008|consen 261 VLSRDSITIRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTWHTASPT---ERQILGVINLQPKDFSVH 335 (783)
T ss_pred hhccCcceEEEecccccCCcccccccceeeecccccccccccccceeecCcCcCCcc---ceeEEeeccCChhhccch
Confidence 66664 6899999754220 000111 121 2256778888876633 234445444455555544
No 329
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.16 E-value=0.00095 Score=60.52 Aligned_cols=205 Identities=17% Similarity=0.161 Sum_probs=110.1
Q ss_pred cEEEEEeCC--CeEEEEECCCcEEEEECCCcc-------------------------------------------eEEEe
Q 013717 214 AVTGLAVNN--GLIYSVSWDKSLKIWRASDLR-------------------------------------------CLESI 248 (437)
Q Consensus 214 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-------------------------------------------~~~~~ 248 (437)
.|+.+.+.+ ..|++|...|.|-||.....+ +...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 466666666 778888888888877542211 11122
Q ss_pred ecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEE--eeC------ccccEEEEEEcc-----CC---CEE
Q 013717 249 KAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIAT--LEK------HKSAVNALALSD-----DG---TVL 312 (437)
Q Consensus 249 ~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~--~~~------~~~~i~~~~~~~-----~~---~~l 312 (437)
....++|++++.+.-|.++.|+.+|.+.|.|++... .+.. +.. ....++++.|.- |+ -.+
T Consensus 83 ~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPa----vI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPA----VIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp ---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTE----EEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred eccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCe----EEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 234689999999988889999999999999997543 2222 111 234677888863 33 378
Q ss_pred EEEeCCCcEEEEECCC-Ccc--ceEEeeeecccccceEEEEee--------------------C---CEEEEEeCCCcEE
Q 013717 313 FSGACDRSILVWDRED-SAN--HMVVTGALRGHGKAILCLINV--------------------A---GLLMSGSADRTVR 366 (437)
Q Consensus 313 ~~~~~dg~i~i~d~~~-~~~--~~~~~~~~~~~~~~i~~~~~~--------------------~---~~l~~~~~dg~i~ 366 (437)
++|...|.+.+|.+-- ... ...+......+...+..+..- + .-++....+..+|
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir 238 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR 238 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence 8999999999998751 111 112222222344555444321 0 1234444566799
Q ss_pred EeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 367 IWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 367 iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
++...+.+ ...+.....-....+.+.+......+..|++-..||.|+++.+..-++
T Consensus 239 v~~~~~~k---~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke 294 (395)
T PF08596_consen 239 VFKPPKSK---GAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE 294 (395)
T ss_dssp EE-TT------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E
T ss_pred EEeCCCCc---ccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH
Confidence 99988766 333322222233344443211011224789999999999999876543
No 330
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.15 E-value=0.0011 Score=61.04 Aligned_cols=222 Identities=15% Similarity=0.154 Sum_probs=115.9
Q ss_pred CcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEE
Q 013717 141 SSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLA 219 (437)
Q Consensus 141 h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 219 (437)
.......+.++|++ +++.+.||...++.....+.. ..+.-..++
T Consensus 31 ~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k-----------------------------------~~G~g~~~v 75 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNK-----------------------------------AFGSGLSFV 75 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEE-----------------------------------EEEE-SEEE
T ss_pred CCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccc-----------------------------------ccCceeEEE
Confidence 34457889999877 666688899889884332211 123344566
Q ss_pred eCC-CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccc
Q 013717 220 VNN-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKS 298 (437)
Q Consensus 220 ~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 298 (437)
|.+ +.+|+-...+.|.|+.--+.+....++. ...+..|-. |.++....++.|.+||+.+. +.++.+...
T Consensus 76 w~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If~---G~LL~~~~~~~i~~yDw~~~----~~i~~i~v~-- 145 (443)
T PF04053_consen 76 WSSRNRYAVLESSSTIKIYKNFKNEVVKSIKL-PFSVEKIFG---GNLLGVKSSDFICFYDWETG----KLIRRIDVS-- 145 (443)
T ss_dssp E-TSSEEEEE-TTS-EEEEETTEE-TT------SS-EEEEE----SSSEEEEETTEEEEE-TTT------EEEEESS---
T ss_pred EecCccEEEEECCCeEEEEEcCccccceEEcC-CcccceEEc---CcEEEEECCCCEEEEEhhHc----ceeeEEecC--
Confidence 766 7788888889999974323333223331 122333332 77444445558999988754 366666532
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEECCCC----------ccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEe
Q 013717 299 AVNALALSDDGTVLFSGACDRSILVWDREDS----------ANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIW 368 (437)
Q Consensus 299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~----------~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iw 368 (437)
+|..+.|+++|.+++..+.+ .++|++.... +........ ....|.+..|.++.++-.+.. +|+.+
T Consensus 146 ~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E---~~~~IkSg~W~~d~fiYtT~~-~lkYl 220 (443)
T PF04053_consen 146 AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHE---ISERIKSGCWVEDCFIYTTSN-HLKYL 220 (443)
T ss_dssp E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEE---E-S--SEEEEETTEEEEE-TT-EEEEE
T ss_pred CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEE---ecceeEEEEEEcCEEEEEcCC-eEEEE
Confidence 48999999999999988755 6888776432 002222221 245677788888855555555 67763
Q ss_pred eCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717 369 QRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 369 d~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
-.++ ...+..+ ..++.=+...+..+ .++....|+.|..+.++..
T Consensus 221 --~~Ge-~~~i~~l---d~~~yllgy~~~~~-----~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 221 --VNGE-TGIIAHL---DKPLYLLGYLPKEN-----RLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp --ETTE-EEEEEE----SS--EEEEEETTTT-----EEEEE-TT--EEEEE--HH
T ss_pred --EcCC-cceEEEc---CCceEEEEEEccCC-----EEEEEECCCCEEEEEECHH
Confidence 3222 1233333 45677777777554 5888889999999887643
No 331
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.13 E-value=1.4e-06 Score=82.04 Aligned_cols=187 Identities=14% Similarity=0.191 Sum_probs=125.3
Q ss_pred eeeec-CccCCeEEEEee--CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EE-EEecCC-
Q 013717 91 NSVQL-GHKLPIGCIAVH--HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IF-TAHQDC- 162 (437)
Q Consensus 91 ~~~~~-~h~~~V~~l~~~--~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~-s~~~dg- 162 (437)
...++ .|+...+|++|+ .++|+.|+-. .|++|++.+|....-. ..|..+|+-+.-+-++ ++ +++...
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~-----ncH~SavT~vePs~dgs~~Ltsss~S~P 1167 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESV-----NCHQSAVTLVEPSVDGSTQLTSSSSSSP 1167 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccc-----cccccccccccccCCcceeeeeccccCc
Confidence 34455 788999999999 7899999988 9999999997443332 5699999999988444 33 333333
Q ss_pred eEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCC-CcEEEEEeCC--CeEEEEECCCcEEEEEC
Q 013717 163 KIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHG-DAVTGLAVNN--GLIYSVSWDKSLKIWRA 239 (437)
Q Consensus 163 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~--~~l~~~~~dg~i~iwd~ 239 (437)
-..+|+....- ... |. ..-.++.|+. ..-+.|.......+||+
T Consensus 1168 lsaLW~~~s~~--~~~--------------------------------Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDv 1213 (1516)
T KOG1832|consen 1168 LSALWDASSTG--GPR--------------------------------HSFDEDKAVKFSNSLQFRALGTEADDALLYDV 1213 (1516)
T ss_pred hHHHhcccccc--Ccc--------------------------------ccccccceeehhhhHHHHHhcccccceEEEec
Confidence 56789886521 111 21 2345777877 44455666667899999
Q ss_pred CCcceEEEee----cccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEE
Q 013717 240 SDLRCLESIK----AHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSG 315 (437)
Q Consensus 240 ~~~~~~~~~~----~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 315 (437)
+++..+.++- +....-++..|+|+..|+. .|| .+||++... .++.|.... .-..-.|+|.|..++.-
T Consensus 1214 qT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl--ndG--vLWDvR~~~----aIh~FD~ft-~~~~G~FHP~g~eVIIN 1284 (1516)
T KOG1832|consen 1214 QTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL--NDG--VLWDVRIPE----AIHRFDQFT-DYGGGGFHPSGNEVIIN 1284 (1516)
T ss_pred ccCcHHHHhcCcchhhhhhccccccCCCcceEe--eCc--eeeeeccHH----HHhhhhhhe-ecccccccCCCceEEee
Confidence 9998776632 2222336788999988554 355 479887543 344443322 11234589999988876
Q ss_pred eCCCcEEEEECCCCc
Q 013717 316 ACDRSILVWDREDSA 330 (437)
Q Consensus 316 ~~dg~i~i~d~~~~~ 330 (437)
+ -|||+++.+
T Consensus 1285 S-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1285 S-----EIWDMRTFK 1294 (1516)
T ss_pred c-----hhhhhHHHH
Confidence 5 389998765
No 332
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.12 E-value=0.0091 Score=56.60 Aligned_cols=283 Identities=10% Similarity=0.037 Sum_probs=146.7
Q ss_pred cccCCCceeEEecCCCcceeeeec-Ccc-----CCe--EEEEeeC-CEEEEEecC-eEEEEeCCCCceeeeeccccCCCC
Q 013717 72 QKLSPDETINFSSASHLCINSVQL-GHK-----LPI--GCIAVHH-NFLYAASSH-EINVYDRTGTTWTSINTFNDNDSS 141 (437)
Q Consensus 72 ~s~s~dg~i~~~~~~~~~~~~~~~-~h~-----~~V--~~l~~~~-~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h 141 (437)
...+.++.+...+......+-+.- ... ..+ ..+++.+ +.++.++.+ .|.-+|.++++..=..........
T Consensus 65 y~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~ 144 (488)
T cd00216 65 YFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPP 144 (488)
T ss_pred EEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCEeeeecCCCCcCc
Confidence 334556777777765543332222 111 011 1123334 788888888 999999998744322222100000
Q ss_pred cccE-EEEEEeCCeEEEEe---------cCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC
Q 013717 142 SGSV-KSVTFCDGKIFTAH---------QDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH 211 (437)
Q Consensus 142 ~~~v-~~l~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (437)
...+ ....+.++.++.++ .+|.+..+|..+++................. ... ..... .+
T Consensus 145 ~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~-~~~---------~~~~~-~~ 213 (488)
T cd00216 145 GYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPT-WGP---------DRQMW-GP 213 (488)
T ss_pred ceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCC-CCC---------Cccee-cC
Confidence 0001 12233345555553 3678999999998866554432110000000 000 00000 01
Q ss_pred C-CcEE-EEEeCC--CeEEEEECCC------------------cEEEEECCCcceEEEeecccccEE------EEEEe--
Q 013717 212 G-DAVT-GLAVNN--GLIYSVSWDK------------------SLKIWRASDLRCLESIKAHEDAVN------AVAVS-- 261 (437)
Q Consensus 212 ~-~~v~-~~~~~~--~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~v~------~~~~~-- 261 (437)
. ..+. ..++++ +.++.++.++ .|.-+|..+++.+..++....... ...+.
T Consensus 214 ~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~ 293 (488)
T cd00216 214 GGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADI 293 (488)
T ss_pred CCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEec
Confidence 1 1111 233332 6677776554 799999999999887752211111 01111
Q ss_pred --cCC----eEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEE------------------eC
Q 013717 262 --AGG----TVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSG------------------AC 317 (437)
Q Consensus 262 --~~~----~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~------------------~~ 317 (437)
-++ .+++++.+|.+..+|.++++..++.... ...++.+| ..++.+ ..
T Consensus 294 ~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-------~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~ 364 (488)
T cd00216 294 KPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-------EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPG 364 (488)
T ss_pred cccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee-------ccccccCC--ceEEEccccccccCcccccCCCCCCC
Confidence 123 2777888999999998877644432211 11123333 223222 24
Q ss_pred CCcEEEEECCCCccceEEeeeecccc----cc--eEEEEeeCCEEEEEeCCCcEEEeeCCCCC
Q 013717 318 DRSILVWDREDSANHMVVTGALRGHG----KA--ILCLINVAGLLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 318 dg~i~i~d~~~~~~~~~~~~~~~~~~----~~--i~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 374 (437)
+|.+.-+|+.+++..+........+. .. ...+...++.|++++.||.|+.+|.++++
T Consensus 365 ~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~ 427 (488)
T cd00216 365 KGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGK 427 (488)
T ss_pred ceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCc
Confidence 67888889988876655432200000 11 12344567789999999999999999988
No 333
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.12 E-value=0.0059 Score=54.51 Aligned_cols=211 Identities=17% Similarity=0.205 Sum_probs=124.9
Q ss_pred eeEEecCCCcceeeeec--CccCCeEEEEee---------CCEEEEEec-----------CeEEEEeCCCC-----ceee
Q 013717 79 TINFSSASHLCINSVQL--GHKLPIGCIAVH---------HNFLYAASS-----------HEINVYDRTGT-----TWTS 131 (437)
Q Consensus 79 ~i~~~~~~~~~~~~~~~--~h~~~V~~l~~~---------~~~l~s~~~-----------d~v~vwd~~~~-----~~~~ 131 (437)
.|.+.+....... ..+ .....+.+++.- ..+++.|.. +.|.++++... +.+.
T Consensus 3 ~i~l~d~~~~~~~-~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDPTTFEVL-DSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEEEETTTSSEE-EEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEEEeCCCCeEE-EEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3455555433322 222 445555655543 257777763 36999999883 3444
Q ss_pred eeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecC
Q 013717 132 INTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEH 211 (437)
Q Consensus 132 ~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (437)
+... ...++|++|+-..+.|+.+. .+.|.+|++...+...... ....
T Consensus 82 i~~~----~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~~~~----------------------------~~~~ 128 (321)
T PF03178_consen 82 IHST----EVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLLKKA----------------------------FYDS 128 (321)
T ss_dssp EEEE----EESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEEEEE----------------------------EE-B
T ss_pred EEEE----eecCcceEhhhhCCEEEEee-cCEEEEEEccCcccchhhh----------------------------eecc
Confidence 4332 46789999999988855444 5899999998776111111 0123
Q ss_pred CCcEEEEEeCCCeEEEEECCCcEEEEECCC-cceEEEee--cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCc---
Q 013717 212 GDAVTGLAVNNGLIYSVSWDKSLKIWRASD-LRCLESIK--AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNE--- 284 (437)
Q Consensus 212 ~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~--~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~--- 284 (437)
...+.++....++++.|.....+.++..+. .+.+..+. .....++++.+-+++. ++++..+|.+.++......
T Consensus 129 ~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~ 208 (321)
T PF03178_consen 129 PFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNS 208 (321)
T ss_dssp SSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SST
T ss_pred eEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCccc
Confidence 347888888889999999988999885543 22233332 2355688888886665 9999999999999765211
Q ss_pred c----cceeeEEeeCccccEEEE---EEcc--CCC------EEEEEeCCCcEEEE
Q 013717 285 K----RHALIATLEKHKSAVNAL---ALSD--DGT------VLFSGACDRSILVW 324 (437)
Q Consensus 285 ~----~~~~~~~~~~~~~~i~~~---~~~~--~~~------~l~~~~~dg~i~i~ 324 (437)
. .......+. ....|+++ .+.| .+. .++.++.+|.|.+.
T Consensus 209 ~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 209 RDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp TTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred ccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 1 122223333 34567777 5555 222 47788889988844
No 334
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.11 E-value=0.0003 Score=49.88 Aligned_cols=98 Identities=20% Similarity=0.312 Sum_probs=69.5
Q ss_pred EEEEEeCC------CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccce
Q 013717 215 VTGLAVNN------GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHA 288 (437)
Q Consensus 215 v~~~~~~~------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 288 (437)
|++|++.. +.|++|+.|..|++|+- .+.+.++. ..+.|+++.-...++++.+..+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~------ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRSQ------ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCcc------
Confidence 45555532 89999999999999984 35677776 45678889888888899999999999996421
Q ss_pred eeEEeeCccccEEEEEEcc---CC-CEEEEEeCCCcEE
Q 013717 289 LIATLEKHKSAVNALALSD---DG-TVLFSGACDRSIL 322 (437)
Q Consensus 289 ~~~~~~~~~~~i~~~~~~~---~~-~~l~~~~~dg~i~ 322 (437)
.+-..+ .+..+.++++.. || ..|++|-.+|.|-
T Consensus 73 RlWRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 RLWRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 122222 233466666544 23 3788898888774
No 335
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=98.11 E-value=0.0097 Score=56.70 Aligned_cols=196 Identities=15% Similarity=0.115 Sum_probs=105.4
Q ss_pred CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcc------cEEEEEEeCCeEEEEecCCeEEEEeCCCCcccccccc
Q 013717 108 HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSG------SVKSVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTT 180 (437)
Q Consensus 108 ~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~------~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 180 (437)
+..|+.++.+ .|.-.|..+++..=............ .-..+++.++.++.++.|+.|.-.|.++++.......
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeeccc
Confidence 6677777766 88888988864322221110000000 0122455677788889999999999999986554332
Q ss_pred cCccccceeeecCCCCeeEEeeccceeeecCCCcEEE-EEeCCCeEEEEE------CCCcEEEEECCCcceEEEeecccc
Q 013717 181 LPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTG-LAVNNGLIYSVS------WDKSLKIWRASDLRCLESIKAHED 253 (437)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~ 253 (437)
.... ....+.+ -.+..+.++.+. .+|.|..+|.++|+.+..+..-..
T Consensus 149 ~~~~--------------------------~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~ 202 (527)
T TIGR03075 149 GDYK--------------------------AGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPG 202 (527)
T ss_pred cccc--------------------------ccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCC
Confidence 1000 0001111 111224555554 268999999999988876542111
Q ss_pred -------------------------------cEE-EEEEecCCe-EEEEeCC-----C-----------eEEEecCCCCc
Q 013717 254 -------------------------------AVN-AVAVSAGGT-VYTGSAD-----R-----------KIRVWAKPFNE 284 (437)
Q Consensus 254 -------------------------------~v~-~~~~~~~~~-l~~~~~d-----g-----------~v~iwd~~~~~ 284 (437)
.+. .+++.|+.. +..+..+ + .|.-.|+++++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~ 282 (527)
T TIGR03075 203 DMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGK 282 (527)
T ss_pred CcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCC
Confidence 111 234555443 5554422 2 44555555544
Q ss_pred ccceeeEEeeCcc-------ccEEEEEEccCCC---EEEEEeCCCcEEEEECCCCcc
Q 013717 285 KRHALIATLEKHK-------SAVNALALSDDGT---VLFSGACDRSILVWDREDSAN 331 (437)
Q Consensus 285 ~~~~~~~~~~~~~-------~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~ 331 (437)
..+.. ....|. ....-+.+..+|+ .++.+..+|.+++.|.++++.
T Consensus 283 ~~W~~--Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 283 IKWHY--QTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EEEee--eCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 33221 111121 1222233334676 788999999999999998865
No 336
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.11 E-value=0.0041 Score=53.24 Aligned_cols=222 Identities=14% Similarity=0.211 Sum_probs=127.4
Q ss_pred EEEEeCCe---EEEEecCCe-EEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC
Q 013717 147 SVTFCDGK---IFTAHQDCK-IRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN 222 (437)
Q Consensus 147 ~l~~~~~~---l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 222 (437)
.++.+|.. ++.+-.-|+ ..+||..+++....+.. ...+.|.+|. .|++
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a----------------------~~gRHFyGHg------~fs~ 60 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA----------------------PPGRHFYGHG------VFSP 60 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC----------------------CCCCEEecCE------EEcC
Confidence 44555432 555554443 56788888875554432 2233445552 3555
Q ss_pred --CeEEEEE-----CCCcEEEEECC-CcceEEEeecccccEEEEEEecCCe-EEEEe------------------CCCeE
Q 013717 223 --GLIYSVS-----WDKSLKIWRAS-DLRCLESIKAHEDAVNAVAVSAGGT-VYTGS------------------ADRKI 275 (437)
Q Consensus 223 --~~l~~~~-----~dg~i~iwd~~-~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~------------------~dg~v 275 (437)
++|++.- ..|.|-|||.. +.+.+.++..+.-.-..+.+.|||+ |+++- ++..+
T Consensus 61 dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL 140 (305)
T PF07433_consen 61 DGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSL 140 (305)
T ss_pred CCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCce
Confidence 6666653 35889999998 6778888887766677788999995 55542 12233
Q ss_pred EEecCCCCcccceeeEE--e--eCccccEEEEEEccCCCEEEEEeCCCc-------EEEEECCCCccceEEee---eecc
Q 013717 276 RVWAKPFNEKRHALIAT--L--EKHKSAVNALALSDDGTVLFSGACDRS-------ILVWDREDSANHMVVTG---ALRG 341 (437)
Q Consensus 276 ~iwd~~~~~~~~~~~~~--~--~~~~~~i~~~~~~~~~~~l~~~~~dg~-------i~i~d~~~~~~~~~~~~---~~~~ 341 (437)
.+.|..++ +++.. + ..|...|..+++.++|..++..-..|. |.+++... ....+.. ....
T Consensus 141 ~~ld~~sG----~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~ 214 (305)
T PF07433_consen 141 VYLDARSG----ALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRR 214 (305)
T ss_pred EEEecCCC----ceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHh
Confidence 33333222 23333 3 336778999999999877666544432 33333221 1111110 0122
Q ss_pred cccceEEEEeeCC--EE-EEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCc
Q 013717 342 HGKAILCLINVAG--LL-MSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGE 414 (437)
Q Consensus 342 ~~~~i~~~~~~~~--~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~ 414 (437)
-...+-+++++.+ ++ +++-..|.+.+||..++. .+.... -..+..++..+++ +++|.+. |.
T Consensus 215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~---~~~~~~--l~D~cGva~~~~~------f~~ssG~-G~ 278 (305)
T PF07433_consen 215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR---LLGSVP--LPDACGVAPTDDG------FLVSSGQ-GQ 278 (305)
T ss_pred hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC---Eeeccc--cCceeeeeecCCc------eEEeCCC-cc
Confidence 3345667777654 44 556667899999999877 443332 2245566666554 6766665 44
No 337
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.09 E-value=0.0057 Score=53.31 Aligned_cols=226 Identities=12% Similarity=0.131 Sum_probs=127.2
Q ss_pred eCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEE
Q 013717 151 CDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSV 228 (437)
Q Consensus 151 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~ 228 (437)
.++.|+.|+.+| +.+++.......... .+...|..+..-+ +.+++-
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i-------------------------------~~~~~I~ql~vl~~~~~llvL 53 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRI-------------------------------LKLSSITQLSVLPELNLLLVL 53 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeE-------------------------------eecceEEEEEEecccCEEEEE
Confidence 355688998888 889998322211111 1333488888877 555555
Q ss_pred ECCCcEEEEECCCcceEEEe--------------ecccccEEEEE--EecCCe-EEEEeCCCeEEEecCCCCcccc-eee
Q 013717 229 SWDKSLKIWRASDLRCLESI--------------KAHEDAVNAVA--VSAGGT-VYTGSADRKIRVWAKPFNEKRH-ALI 290 (437)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~--------------~~~~~~v~~~~--~~~~~~-l~~~~~dg~v~iwd~~~~~~~~-~~~ 290 (437)
+ |+.++++++......... ......+...+ -...+. .++......|.+|......... ...
T Consensus 54 s-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ 132 (275)
T PF00780_consen 54 S-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLL 132 (275)
T ss_pred c-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCccccccee
Confidence 4 599999998765544311 11233455555 112333 5555556699999876543333 455
Q ss_pred EEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeee--------cccccceEEEEeeCC-EEEEEeC
Q 013717 291 ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGAL--------RGHGKAILCLINVAG-LLMSGSA 361 (437)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~--------~~~~~~i~~~~~~~~-~l~~~~~ 361 (437)
+.+. ....+..++|. ++.++.|..++ ..+.|+.++.....+.... .....++..+....+ +|++-
T Consensus 133 ke~~-lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~-- 206 (275)
T PF00780_consen 133 KEIS-LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCY-- 206 (275)
T ss_pred EEEE-cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEe--
Confidence 5554 44788999998 55788887555 8888998664332221100 011223444444433 55432
Q ss_pred CCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCC
Q 013717 362 DRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPN 426 (437)
Q Consensus 362 dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 426 (437)
|..-.+.|.. |+... ...+.- ......+++... ||+..+.+ .|.||++.+++..
T Consensus 207 ~~~g~fv~~~-G~~~r-~~~i~W-~~~p~~~~~~~p-------yli~~~~~-~iEV~~~~~~~lv 260 (275)
T PF00780_consen 207 DNIGVFVNKN-GEPSR-KSTIQW-SSAPQSVAYSSP-------YLIAFSSN-SIEVRSLETGELV 260 (275)
T ss_pred cceEEEEcCC-CCcCc-ccEEEc-CCchhEEEEECC-------EEEEECCC-EEEEEECcCCcEE
Confidence 3333333443 33211 122222 225556666543 67777765 5999999998653
No 338
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.08 E-value=0.00064 Score=67.16 Aligned_cols=202 Identities=12% Similarity=0.120 Sum_probs=124.2
Q ss_pred CCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcc---
Q 013717 212 GDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEK--- 285 (437)
Q Consensus 212 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~--- 285 (437)
...|.++.|.. +.++.+..+|.|.+-|.++.... ....-...|.+++|+||+. ++..+..+++.+-+-....-
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~ 146 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK 146 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence 36888998876 88888999999999998776432 2233567899999999999 77777777776543210000
Q ss_pred --------cc--------eeeEEeeCc---------------------cccEEEEEEccCCCEEEEE-----eCCCcEEE
Q 013717 286 --------RH--------ALIATLEKH---------------------KSAVNALALSDDGTVLFSG-----ACDRSILV 323 (437)
Q Consensus 286 --------~~--------~~~~~~~~~---------------------~~~i~~~~~~~~~~~l~~~-----~~dg~i~i 323 (437)
.. +....+++. .+.=+.|.|--||+++++. ..-..|+|
T Consensus 147 ~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV 226 (1265)
T KOG1920|consen 147 PLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV 226 (1265)
T ss_pred ccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE
Confidence 00 000011111 1112458999999999983 22379999
Q ss_pred EECCCCccceEEeeeecccccceEEEEeeCCEEEEEe---CCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCC
Q 013717 324 WDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGS---ADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQ 400 (437)
Q Consensus 324 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 400 (437)
||-+ +... .............++.++|.++++-. .|+.|.+|.-+.-......-.+.....+|..++|..+++
T Consensus 227 ~drE-g~Ln--s~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd- 302 (1265)
T KOG1920|consen 227 YDRE-GALN--STSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD- 302 (1265)
T ss_pred eccc-chhh--cccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCC-
Confidence 9976 3211 11111112334455666666777653 466799998665332223333333445599999999885
Q ss_pred CceEEEEE---ecCCCcEEEEeecc
Q 013717 401 NGVVSVFS---GSLDGEIRAWQVSV 422 (437)
Q Consensus 401 ~~~~~l~s---~~~dg~i~iw~~~~ 422 (437)
.|+. ......|++|-+..
T Consensus 303 ----iLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 303 ----ILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred ----ceeeeecccccceEEEEEecC
Confidence 4555 44455599997654
No 339
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.05 E-value=4.9e-05 Score=70.28 Aligned_cols=150 Identities=16% Similarity=0.183 Sum_probs=101.2
Q ss_pred cEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEee-cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCccccee-e
Q 013717 214 AVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIK-AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHAL-I 290 (437)
Q Consensus 214 ~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~-~ 290 (437)
..+|++...++++.|+.-|.+++|+-..++....-. +..+.+....++++.. +|.|+..|.|.++-+......... +
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~ 116 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYV 116 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceee
Confidence 345666666999999999999999976665433222 2344556666788777 888999999999987643222111 1
Q ss_pred EEe-eCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCC
Q 013717 291 ATL-EKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADR 363 (437)
Q Consensus 291 ~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg 363 (437)
... +.|...|++++|++++..+++|...|+|..-.+..........+.+......|..++....+|++++--.
T Consensus 117 t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r 190 (726)
T KOG3621|consen 117 TPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTR 190 (726)
T ss_pred ccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhh
Confidence 112 2267899999999999999999999999998887621111112223334667788887777666555443
No 340
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.93 E-value=0.0047 Score=58.14 Aligned_cols=110 Identities=15% Similarity=0.113 Sum_probs=67.5
Q ss_pred ecCCeEEEEeCCCeEEEecCCCCcc-cceeeEEeeCccccEEEEEEccCCCEEEEEeC-CCcEEEEECCCCccce-----
Q 013717 261 SAGGTVYTGSADRKIRVWAKPFNEK-RHALIATLEKHKSAVNALALSDDGTVLFSGAC-DRSILVWDREDSANHM----- 333 (437)
Q Consensus 261 ~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~----- 333 (437)
.++|+.+.. .++.|.+.|.+.... ....+..+. -......++++|||+++++++. +.+|.|+|+.+.+..+
T Consensus 285 vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 285 VKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred hhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 346662222 367899999765111 112333333 4567789999999998877655 8999999998744211
Q ss_pred ---EEeeee-cccccceEEEEeeCCEEEEEeCCCcEEEeeCCC
Q 013717 334 ---VVTGAL-RGHGKAILCLINVAGLLMSGSADRTVRIWQRGS 372 (437)
Q Consensus 334 ---~~~~~~-~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~ 372 (437)
.+.... .+....-+.+...++...+-..|..|..|++..
T Consensus 363 ~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 363 PRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred ccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 111111 122222344444455777778899999999875
No 341
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.92 E-value=0.012 Score=54.10 Aligned_cols=196 Identities=12% Similarity=0.073 Sum_probs=98.1
Q ss_pred eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCC
Q 013717 118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNS 196 (437)
Q Consensus 118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (437)
.|+||+..+..... ..+ . + +.|.++.|..+. |+....||.++++|+.... ...+.. ...
T Consensus 62 ~I~iys~sG~ll~~-i~w---~-~-~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~-~i~------------ 121 (410)
T PF04841_consen 62 SIQIYSSSGKLLSS-IPW---D-S-GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGE-EIE------------ 121 (410)
T ss_pred EEEEECCCCCEeEE-EEE---C-C-CCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhh-hcc------------
Confidence 49999988753322 222 2 2 899999998655 9999999999999987433 000000 000
Q ss_pred eeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcc-eEEEee---c-----c-cccEEE-EEEecCCe
Q 013717 197 YVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLR-CLESIK---A-----H-EDAVNA-VAVSAGGT 265 (437)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~---~-----~-~~~v~~-~~~~~~~~ 265 (437)
...-....+....+...-++.-..++.+.+.+--... ....+. . + ...... ..++.+..
T Consensus 122 ----------~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~ 191 (410)
T PF04841_consen 122 ----------EEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV 191 (410)
T ss_pred ----------ccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcc
Confidence 0000111222223332223333344444443322211 111110 0 0 000111 12333333
Q ss_pred -EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeeccccc
Q 013717 266 -VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGK 344 (437)
Q Consensus 266 -l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 344 (437)
.+....++.+.+.+-..- ..+ ...+++..|+.||+|+++|.-..+|.+.+.+..-.+....+. . ....
T Consensus 192 ~~i~~~~g~~i~~i~~~~~-------~~i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~--~-~~~~ 260 (410)
T PF04841_consen 192 VEILLANGETIYIIDENSF-------KQI-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD--T-DSKS 260 (410)
T ss_pred eEEEEecCCEEEEEEcccc-------ccc-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee--c-CcCC
Confidence 444444555554432110 011 134689999999999999999999999998865443222221 1 1233
Q ss_pred ceEEEEeeCC
Q 013717 345 AILCLINVAG 354 (437)
Q Consensus 345 ~i~~~~~~~~ 354 (437)
....+.|.|+
T Consensus 261 ~p~~~~WCG~ 270 (410)
T PF04841_consen 261 PPKQMAWCGN 270 (410)
T ss_pred CCcEEEEECC
Confidence 4566777766
No 342
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.89 E-value=0.0044 Score=60.53 Aligned_cols=99 Identities=15% Similarity=0.194 Sum_probs=73.7
Q ss_pred CeEEEEECCCcEEEEECCCcc--eEEE-e--ecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCcc
Q 013717 223 GLIYSVSWDKSLKIWRASDLR--CLES-I--KAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHK 297 (437)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~--~~~~-~--~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 297 (437)
...+.|-.++.+..||.+-.. ++.. . .......+|++-..+|.||+|+.+|.||+||-. +. .....+.+..
T Consensus 543 e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~-g~---~AKT~lp~lG 618 (794)
T PF08553_consen 543 EQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRL-GK---RAKTALPGLG 618 (794)
T ss_pred CceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCcEEeeccc-ch---hhhhcCCCCC
Confidence 556778888999999987532 2211 1 134567889999999999999999999999842 22 2333455678
Q ss_pred ccEEEEEEccCCCEEEEEeCCCcEEEEEC
Q 013717 298 SAVNALALSDDGTVLFSGACDRSILVWDR 326 (437)
Q Consensus 298 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (437)
.+|..|..+.||++|++.+ +..+.+++.
T Consensus 619 ~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 619 DPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 9999999999999998765 556777775
No 343
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.88 E-value=0.0026 Score=45.19 Aligned_cols=104 Identities=25% Similarity=0.412 Sum_probs=69.4
Q ss_pred EEEEEEcc---CC-CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeC-CEEEEEeCCCcEEEeeCCCCC
Q 013717 300 VNALALSD---DG-TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVA-GLLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 300 i~~~~~~~---~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 374 (437)
|++|++.. || +.|++|+.|..|++|+-.. +..... ....+.++...+ ..++.+-.+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e------~~~Ei~-e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~-- 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE------IVAEIT-ETDKVTSLCSLGGGRFAYALANGTVGVYDRSQ-- 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc------EEEEEe-cccceEEEEEcCCCEEEEEecCCEEEEEeCcc--
Confidence 45666554 33 5899999999999998642 222222 245566666554 5999999999999998654
Q ss_pred CeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEE
Q 013717 375 RFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRA 417 (437)
Q Consensus 375 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~i 417 (437)
.+...+. +..++++++..... .+..-|++|-.+|.|-+
T Consensus 73 ---RlWRiKS-K~~~~~~~~~D~~g-dG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 73 ---RLWRIKS-KNQVTSMAFYDING-DGVPELIVGWSNGKVEV 110 (111)
T ss_pred ---eeeeecc-CCCeEEEEEEcCCC-CCceEEEEEecCCeEEe
Confidence 3344443 33477777765442 23356999999998753
No 344
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.87 E-value=0.012 Score=49.56 Aligned_cols=201 Identities=12% Similarity=0.100 Sum_probs=109.5
Q ss_pred ecCCCcEEEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecc-cccEEEEEEecCCeEEEEe-CCCeEEEecCCCC
Q 013717 209 IEHGDAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAH-EDAVNAVAVSAGGTVYTGS-ADRKIRVWAKPFN 283 (437)
Q Consensus 209 ~~~~~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~l~~~~-~dg~v~iwd~~~~ 283 (437)
.+-...+.+++|+| .++++....+.|..++. +|+.+..+.-. .+..-.|++..++.++... .++.+.++++...
T Consensus 18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDD 96 (248)
T ss_dssp TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE---
T ss_pred CCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecc
Confidence 34556799999998 46666677888888886 57888887632 3568889998888855555 4899999988443
Q ss_pred cccc--eeeEEee-----CccccEEEEEEccCCCEEEEEeCCCcEEEEECCC--CccceEEeee--e---cccccceEEE
Q 013717 284 EKRH--ALIATLE-----KHKSAVNALALSDDGTVLFSGACDRSILVWDRED--SANHMVVTGA--L---RGHGKAILCL 349 (437)
Q Consensus 284 ~~~~--~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~--~---~~~~~~i~~~ 349 (437)
.... .....+. .++..+-.++|+|.++.|+++-+..-..+|.+.. .......... + ......+.++
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l 176 (248)
T PF06977_consen 97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGL 176 (248)
T ss_dssp -TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EE
T ss_pred ccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccce
Confidence 3211 1111121 2456689999999888888887777777777654 1111111110 1 1123345677
Q ss_pred EeeCC---EEEEEeCCCcEEEeeCCCCCCeeeeeeecC-C------CCCeeEEEEEccCCCCceEEEEEecCCCcEEEE
Q 013717 350 INVAG---LLMSGSADRTVRIWQRGSDGRFGCLAVLEG-H------TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAW 418 (437)
Q Consensus 350 ~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-h------~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw 418 (437)
.+++. +++.......|..+|.. ++. .....+.. . -..--.|+|.+++. |...++-+..+++
T Consensus 177 ~~~p~t~~lliLS~es~~l~~~d~~-G~~-~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~------LYIvsEpNlfy~f 247 (248)
T PF06977_consen 177 SYDPRTGHLLILSDESRLLLELDRQ-GRV-VSSLSLDRGFHGLSKDIPQPEGIAFDPDGN------LYIVSEPNLFYRF 247 (248)
T ss_dssp EEETTTTEEEEEETTTTEEEEE-TT---E-EEEEE-STTGGG-SS---SEEEEEE-TT--------EEEEETTTEEEEE
T ss_pred EEcCCCCeEEEEECCCCeEEEECCC-CCE-EEEEEeCCcccCcccccCCccEEEECCCCC------EEEEcCCceEEEe
Confidence 77765 77777888889999844 441 22223332 1 12467899999873 5555555544443
No 345
>PHA02713 hypothetical protein; Provisional
Probab=97.85 E-value=0.0043 Score=59.63 Aligned_cols=217 Identities=8% Similarity=0.054 Sum_probs=114.3
Q ss_pred eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecC------CeEEEEeCCCCcccccccccCccccceee
Q 013717 118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQD------CKIRVWQLTPTKHHKLKTTLPTVNDRLLR 190 (437)
Q Consensus 118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 190 (437)
.+..||..+++|..+..+.. ...-.+++..++. ++.||.+ ..+..||..+.... ....++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~----~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~-------- 339 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPN----HIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMI-------- 339 (557)
T ss_pred CEEEEeCCCCeEEECCCCCc----cccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCc--------
Confidence 57889999988887766532 1111234445666 6666643 34667777665421 111111
Q ss_pred ecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCC-----cEEEEECCCcceEE--EeecccccEEEEEEecC
Q 013717 191 FMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDK-----SLKIWRASDLRCLE--SIKAHEDAVNAVAVSAG 263 (437)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~ 263 (437)
..........+.+...+.||.++ .+..||..+.+-.. .+.........++ -+
T Consensus 340 -------------------~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~ 398 (557)
T PHA02713 340 -------------------KNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LD 398 (557)
T ss_pred -------------------chhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--EC
Confidence 01112233444556667777654 47889987653222 2211111111222 26
Q ss_pred Ce-EEEEeCCC-----------------------eEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC-
Q 013717 264 GT-VYTGSADR-----------------------KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD- 318 (437)
Q Consensus 264 ~~-l~~~~~dg-----------------------~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d- 318 (437)
++ .+.|+.++ .+..||..++ .+..+..+....... +++ .-+|+..+.|+.+
T Consensus 399 g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td--~W~~v~~m~~~r~~~-~~~-~~~~~IYv~GG~~~ 474 (557)
T PHA02713 399 QYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN--IWETLPNFWTGTIRP-GVV-SHKDDIYVVCDIKD 474 (557)
T ss_pred CEEEEEeCCCcccccccccccccccccccccccceEEEECCCCC--eEeecCCCCcccccC-cEE-EECCEEEEEeCCCC
Confidence 77 66676542 4667876543 233333222111111 122 2246666777654
Q ss_pred -----CcEEEEECCC-CccceEEeeeecccccceEEEEeeCCEEEEEeCCC--cEEEeeCCCCC
Q 013717 319 -----RSILVWDRED-SANHMVVTGALRGHGKAILCLINVAGLLMSGSADR--TVRIWQRGSDG 374 (437)
Q Consensus 319 -----g~i~i~d~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg--~i~iwd~~~~~ 374 (437)
..+..||..+ .+ +.....+.............+.+.++|+.+| .+..||..+.+
T Consensus 475 ~~~~~~~ve~Ydp~~~~~--W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 475 EKNVKTCIFRYNTNTYNG--WELITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCccceeEEEecCCCCCC--eeEccccCcccccceeEEECCEEEEEeeecceeehhhcCccccc
Confidence 2467888876 33 3333334333444445556677888999888 77888888755
No 346
>PHA02713 hypothetical protein; Provisional
Probab=97.80 E-value=0.0038 Score=59.97 Aligned_cols=190 Identities=8% Similarity=0.096 Sum_probs=99.8
Q ss_pred eCCCeEEEEECC------CcEEEEECCCcceEE--EeecccccEEEEEEecCCe-EEEEeCCC-----eEEEecCCCCcc
Q 013717 220 VNNGLIYSVSWD------KSLKIWRASDLRCLE--SIKAHEDAVNAVAVSAGGT-VYTGSADR-----KIRVWAKPFNEK 285 (437)
Q Consensus 220 ~~~~~l~~~~~d------g~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~-l~~~~~dg-----~v~iwd~~~~~~ 285 (437)
.....++.||.+ ..+..||..+.+-.. .+....... +++ .-+|+ .+.|+.++ .+..||..++
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~-- 377 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SLA-VIDDTIYAIGGQNGTNVERTIECYTMGDD-- 377 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eEE-EECCEEEEECCcCCCCCCceEEEEECCCC--
Confidence 444666667653 347788887664321 111111111 222 23667 67777654 4778887643
Q ss_pred cceeeEEeeCccccEEEEEEccCCCEEEEEeCCC-----------------------cEEEEECCCCccceEEeeeeccc
Q 013717 286 RHALIATLEKHKSAVNALALSDDGTVLFSGACDR-----------------------SILVWDREDSANHMVVTGALRGH 342 (437)
Q Consensus 286 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----------------------~i~i~d~~~~~~~~~~~~~~~~~ 342 (437)
.+..+..+.........+.+ +|+..+.|+.++ .+..||..+.+ +.........
T Consensus 378 ~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~--W~~v~~m~~~ 453 (557)
T PHA02713 378 KWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNI--WETLPNFWTG 453 (557)
T ss_pred eEEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCe--EeecCCCCcc
Confidence 33333322222222222222 577777777542 47778887643 2222222111
Q ss_pred ccceEEEEeeCCEEEEEeCCC------cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCC--c
Q 013717 343 GKAILCLINVAGLLMSGSADR------TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDG--E 414 (437)
Q Consensus 343 ~~~i~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg--~ 414 (437)
..........+.+.+.|+.++ .+..||..+.+.|..+..+.........++. . + ++.+.||.|| .
T Consensus 454 r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~-~-~-----~iyv~Gg~~~~~~ 526 (557)
T PHA02713 454 TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH-D-N-----TIMMLHCYESYML 526 (557)
T ss_pred cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE-C-C-----EEEEEeeecceee
Confidence 222223445566666676542 4678998873347666666554443333333 2 2 4888999888 6
Q ss_pred EEEEeeccCC
Q 013717 415 IRAWQVSVSC 424 (437)
Q Consensus 415 i~iw~~~~~~ 424 (437)
+-.||+.+.+
T Consensus 527 ~e~yd~~~~~ 536 (557)
T PHA02713 527 QDTFNVYTYE 536 (557)
T ss_pred hhhcCccccc
Confidence 7777776654
No 347
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.79 E-value=0.0097 Score=57.13 Aligned_cols=218 Identities=15% Similarity=0.254 Sum_probs=125.0
Q ss_pred eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecC------CeEEEEeCCCCcccccccccCccccceee
Q 013717 118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQD------CKIRVWQLTPTKHHKLKTTLPTVNDRLLR 190 (437)
Q Consensus 118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 190 (437)
.+..||..++.|.....+. ....-.+++..++. .++||.| .++..||..+.+-.. ...+.
T Consensus 302 ~ve~yd~~~~~w~~~a~m~----~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~-------- 368 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMP----SPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMN-------- 368 (571)
T ss_pred eeEEecCCcCcEeecCCCC----cccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceec-cCCcc--------
Confidence 7889999998888887763 44456677777777 7888888 356778877766322 22221
Q ss_pred ecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCc-----EEEEECCCcceEEEeecccccEEEEE-EecCC
Q 013717 191 FMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKS-----LKIWRASDLRCLESIKAHEDAVNAVA-VSAGG 264 (437)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~v~~~~-~~~~~ 264 (437)
..........+.....++|+.||. +-.||..+.+-...-.-.. .....+ ..-+|
T Consensus 369 -------------------~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g 428 (571)
T KOG4441|consen 369 -------------------TKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGG 428 (571)
T ss_pred -------------------CccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECC
Confidence 122223333445577888888865 6677776654322111111 111111 22367
Q ss_pred e-EEEEeCC------CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCc-----EEEEECCCCccc
Q 013717 265 T-VYTGSAD------RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRS-----ILVWDREDSANH 332 (437)
Q Consensus 265 ~-l~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-----i~i~d~~~~~~~ 332 (437)
+ .++|+.+ ..+..||..++. +..+..+........ ++.- ++.+.+.|+.|+. |..||..+.+
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~~--W~~~~~M~~~R~~~g-~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~-- 502 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETNT--WTLIAPMNTRRSGFG-VAVL-NGKIYVVGGFDGTSALSSVERYDPETNQ-- 502 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCCc--eeecCCcccccccce-EEEE-CCEEEEECCccCCCccceEEEEcCCCCc--
Confidence 7 7777754 356778775443 333333332222222 2222 5778888887763 7778887644
Q ss_pred eEEeeeecccccceEEEEeeCCEEEEEeCCC-----cEEEeeCCCCC
Q 013717 333 MVVTGALRGHGKAILCLINVAGLLMSGSADR-----TVRIWQRGSDG 374 (437)
Q Consensus 333 ~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~ 374 (437)
+............+-.....+...++|+.|| +|..||..+++
T Consensus 503 W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 503 WTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred eeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 3333333334444445556666888888887 46777766654
No 348
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.79 E-value=0.0015 Score=62.23 Aligned_cols=68 Identities=12% Similarity=0.116 Sum_probs=57.6
Q ss_pred cEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCC
Q 013717 214 AVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKP 281 (437)
Q Consensus 214 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~ 281 (437)
.+++++|+| -.|+.|-.-|.+.+|...+.+.-.....|..+|..+.|+++|. ++++..-|.|.+|...
T Consensus 61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred ehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 356799999 5667777889999999887766555568999999999999999 9999999999999764
No 349
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.77 E-value=0.022 Score=49.78 Aligned_cols=205 Identities=13% Similarity=0.090 Sum_probs=109.4
Q ss_pred EEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEe-CCeEEEEecCCeEEEEeCCCCcccccccccCccccc
Q 013717 110 FLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC-DGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDR 187 (437)
Q Consensus 110 ~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 187 (437)
++++--.+ .|.-|+..+++.+... +...+.++... .++++.++..| +.+++.+++.....+......
T Consensus 39 L~w~DI~~~~i~r~~~~~g~~~~~~-------~p~~~~~~~~~d~~g~Lv~~~~g-~~~~~~~~~~~~t~~~~~~~~--- 107 (307)
T COG3386 39 LLWVDILGGRIHRLDPETGKKRVFP-------SPGGFSSGALIDAGGRLIACEHG-VRLLDPDTGGKITLLAEPEDG--- 107 (307)
T ss_pred EEEEeCCCCeEEEecCCcCceEEEE-------CCCCcccceeecCCCeEEEEccc-cEEEeccCCceeEEeccccCC---
Confidence 44455555 8888888765333222 33444555544 44444444444 566777655442222211100
Q ss_pred eeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECC------------CcEEEEECCCcceEEEeeccccc
Q 013717 188 LLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWD------------KSLKIWRASDLRCLESIKAHEDA 254 (437)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~ 254 (437)
......+.+.+.+ ..+..+... |.|+.+|. .+..+..+..+-..
T Consensus 108 ----------------------~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~ 164 (307)
T COG3386 108 ----------------------LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTI 164 (307)
T ss_pred ----------------------CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEe
Confidence 0112334444444 333333322 33444443 45555555555556
Q ss_pred EEEEEEecCCe-E-EEEeCCCeEEEecCCC-Ccc-cc-eeeEEeeCccccEEEEEEccCCCEEEEEeCCC-cEEEEECCC
Q 013717 255 VNAVAVSAGGT-V-YTGSADRKIRVWAKPF-NEK-RH-ALIATLEKHKSAVNALALSDDGTVLFSGACDR-SILVWDRED 328 (437)
Q Consensus 255 v~~~~~~~~~~-l-~~~~~dg~v~iwd~~~-~~~-~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~i~i~d~~~ 328 (437)
-+.|+|+||++ + ++=+..+.|.-|++.. ... .. .....+....+..-.++...+|++.+++..+| .|.+|+..
T Consensus 165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd- 243 (307)
T COG3386 165 PNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD- 243 (307)
T ss_pred cCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-
Confidence 78899999997 4 4445568888887752 111 11 11222333456667788888898776555554 89999987
Q ss_pred CccceEEeeeecccccceEEEEeeC
Q 013717 329 SANHMVVTGALRGHGKAILCLINVA 353 (437)
Q Consensus 329 ~~~~~~~~~~~~~~~~~i~~~~~~~ 353 (437)
++.. ..+.-....+.+++|-+
T Consensus 244 G~l~----~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 244 GKLL----GEIKLPVKRPTNPAFGG 264 (307)
T ss_pred CcEE----EEEECCCCCCccceEeC
Confidence 5432 22333335666777765
No 350
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.71 E-value=0.028 Score=48.97 Aligned_cols=272 Identities=11% Similarity=0.148 Sum_probs=139.9
Q ss_pred eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEE----------ecCCeEEEEeCCCCcccccccccCccc
Q 013717 118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTA----------HQDCKIRVWQLTPTKHHKLKTTLPTVN 185 (437)
Q Consensus 118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~----------~~dg~i~iwd~~~~~~~~~~~~~~~~~ 185 (437)
.+.|+|.++++. +..+ ..+-.-.+..++++ ++++ -....|.+||..+-.....+...+...
T Consensus 18 rv~viD~d~~k~--lGmi-----~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R 90 (342)
T PF06433_consen 18 RVYVIDADSGKL--LGMI-----DTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPR 90 (342)
T ss_dssp EEEEEETTTTEE--EEEE-----EEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B
T ss_pred eEEEEECCCCcE--EEEe-----ecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcch
Confidence 688888888543 3332 22333345566554 4443 234569999998875444333211000
Q ss_pred cceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEE--ECCCcEEEEECCCcceEEEeecccccEEEEEEecC
Q 013717 186 DRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSV--SWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAG 263 (437)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~ 263 (437)
...........+.-+.++++.. +--..|.|.|+..++.+.++.. . .+..+--.++
T Consensus 91 ---------------------~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~-P-GC~~iyP~~~ 147 (342)
T PF06433_consen 91 ---------------------AQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT-P-GCWLIYPSGN 147 (342)
T ss_dssp -----------------------BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG-T-SEEEEEEEET
T ss_pred ---------------------heecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC-C-CEEEEEecCC
Confidence 0000111112222222333333 2345678888888888877752 2 2333322333
Q ss_pred CeEEEEeCCCeEEEecCCCCccccee-eEEeeCccccEE-EEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeec-
Q 013717 264 GTVYTGSADRKIRVWAKPFNEKRHAL-IATLEKHKSAVN-ALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALR- 340 (437)
Q Consensus 264 ~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~- 340 (437)
..+.+-+.||.+.-..+....+.... ...|.....++. .-++...+..++--+.+|.|+-.|+............+.
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t 227 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT 227 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence 34889999999999888744432211 122222223322 334444555555577899999999887643322221111
Q ss_pred ---------ccccceEEEEeeCCEEEEEe---CCC-------cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCC
Q 013717 341 ---------GHGKAILCLINVAGLLMSGS---ADR-------TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQN 401 (437)
Q Consensus 341 ---------~~~~~i~~~~~~~~~l~~~~---~dg-------~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 401 (437)
.-.-.+.++....+.|++.. .+| .|-+||+.+++ .+.++.. ..++.+|..+.+...
T Consensus 228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k---rv~Ri~l-~~~~~Si~Vsqd~~P- 302 (342)
T PF06433_consen 228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK---RVARIPL-EHPIDSIAVSQDDKP- 302 (342)
T ss_dssp HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE---EEEEEEE-EEEESEEEEESSSS--
T ss_pred ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe---EEEEEeC-CCccceEEEccCCCc-
Confidence 11122334433333333322 222 47777888766 5555542 246889999987754
Q ss_pred ceEEEEE-ecCCCcEEEEeeccCCCCC
Q 013717 402 GVVSVFS-GSLDGEIRAWQVSVSCPNS 427 (437)
Q Consensus 402 ~~~~l~s-~~~dg~i~iw~~~~~~~~~ 427 (437)
+|++ ...++.+.+||..+++...
T Consensus 303 ---~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 303 ---LLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp ---EEEEEETTTTEEEEEETTT--EEE
T ss_pred ---EEEEEcCCCCeEEEEeCcCCcEEe
Confidence 5654 4568999999999987643
No 351
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.67 E-value=0.033 Score=48.73 Aligned_cols=180 Identities=11% Similarity=0.069 Sum_probs=101.8
Q ss_pred EeCC-CeEEEEECCCcEEEEECCCcceEEEee-----cccccEEEEEEecCCeEEEEeCC------------CeEEEecC
Q 013717 219 AVNN-GLIYSVSWDKSLKIWRASDLRCLESIK-----AHEDAVNAVAVSAGGTVYTGSAD------------RKIRVWAK 280 (437)
Q Consensus 219 ~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~l~~~~~d------------g~v~iwd~ 280 (437)
..+. ..|+++ ..| +.+++.+++..+..+. ......+.+...|+|.+..+... |.|..+|.
T Consensus 73 ~~d~~g~Lv~~-~~g-~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p 150 (307)
T COG3386 73 LIDAGGRLIAC-EHG-VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP 150 (307)
T ss_pred eecCCCeEEEE-ccc-cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC
Confidence 3344 444444 333 5666766555533332 12245677888999998777766 22333332
Q ss_pred CCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC-CCcEEEEECCC--Cccce-EEeeeecccccce--EEEEeeCC
Q 013717 281 PFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC-DRSILVWDRED--SANHM-VVTGALRGHGKAI--LCLINVAG 354 (437)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~--~~~~~-~~~~~~~~~~~~i--~~~~~~~~ 354 (437)
. ....+.+..+-...+.|+||||++.|+.+.. .+.|+-|++.. +.... ..........+.. .++.-.+.
T Consensus 151 ~-----g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~ 225 (307)
T COG3386 151 D-----GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGN 225 (307)
T ss_pred C-----CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCC
Confidence 1 1233344444556689999999988877765 47888888762 11000 0011111112222 45555566
Q ss_pred EEEEEeCCC-cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCC
Q 013717 355 LLMSGSADR-TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLD 412 (437)
Q Consensus 355 ~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d 412 (437)
+.+++..+| .|.+|+.. ++ ++....-....+++++|-..... .+++|+...
T Consensus 226 lw~~a~~~g~~v~~~~pd-G~---l~~~i~lP~~~~t~~~FgG~~~~---~L~iTs~~~ 277 (307)
T COG3386 226 LWVAAVWGGGRVVRFNPD-GK---LLGEIKLPVKRPTNPAFGGPDLN---TLYITSARS 277 (307)
T ss_pred EEEecccCCceEEEECCC-Cc---EEEEEECCCCCCccceEeCCCcC---EEEEEecCC
Confidence 554444444 89999988 55 66666666578889988764322 356666554
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.66 E-value=0.047 Score=50.53 Aligned_cols=220 Identities=12% Similarity=0.127 Sum_probs=100.9
Q ss_pred ccCCeEEEEee--CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeC-CeEEEEecCCeEEEEeCCCCc
Q 013717 97 HKLPIGCIAVH--HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCD-GKIFTAHQDCKIRVWQLTPTK 173 (437)
Q Consensus 97 h~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~~~dg~i~iwd~~~~~ 173 (437)
..-....+.++ |++++.++++.-.|+.... ++.. ..+.-...+|.+ +.+++-...++|.++.--+.+
T Consensus 31 ~~~~p~~ls~npngr~v~V~g~geY~iyt~~~--~r~k--------~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCGDGEYEIYTALA--WRNK--------AFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEETTEEEEEETTT--TEEE--------EEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-
T ss_pred CCcCCeeEEECCCCCEEEEEcCCEEEEEEccC--Cccc--------ccCceeEEEEecCccEEEEECCCeEEEEEcCccc
Confidence 34457788887 8888887777777777443 2221 224445677775 458888888999996322222
Q ss_pred ccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEeecccc
Q 013717 174 HHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKAHED 253 (437)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 253 (437)
....+. ....+..+-. +..|...+ ++.|.+||.++++.+..+...
T Consensus 101 ~~k~i~-------------------------------~~~~~~~If~-G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~-- 145 (443)
T PF04053_consen 101 VVKSIK-------------------------------LPFSVEKIFG-GNLLGVKS-SDFICFYDWETGKLIRRIDVS-- 145 (443)
T ss_dssp TT------------------------------------SS-EEEEE--SSSEEEEE-TTEEEEE-TTT--EEEEESS---
T ss_pred cceEEc-------------------------------CCcccceEEc-CcEEEEEC-CCCEEEEEhhHcceeeEEecC--
Confidence 111111 1112333332 44555554 448999999999999998633
Q ss_pred cEEEEEEecCCeEEEEeCCCeEEEecCCCC------c-ccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEEC
Q 013717 254 AVNAVAVSAGGTVYTGSADRKIRVWAKPFN------E-KRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDR 326 (437)
Q Consensus 254 ~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~------~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (437)
.|..+.|++++.+++-..+..+.+++.... . ........+..-...|.+..|..| .++-.+.. .++. +
T Consensus 146 ~vk~V~Ws~~g~~val~t~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l 220 (443)
T PF04053_consen 146 AVKYVIWSDDGELVALVTKDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--L 220 (443)
T ss_dssp E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--E
T ss_pred CCcEEEEECCCCEEEEEeCCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--E
Confidence 389999999998443334557777754322 0 000012222222456777777755 33333333 4544 2
Q ss_pred CCCccceEEeeeecccccceEEEEeeC--CEEEEEeCCCcEEEeeCC
Q 013717 327 EDSANHMVVTGALRGHGKAILCLINVA--GLLMSGSADRTVRIWQRG 371 (437)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~l~~~~~dg~i~iwd~~ 371 (437)
..++.. ....+ ..++.-+...+ +.+.....|+.+..+.+.
T Consensus 221 ~~Ge~~--~i~~l---d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 221 VNGETG--IIAHL---DKPLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp ETTEEE--EEEE----SS--EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EcCCcc--eEEEc---CCceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 222111 11111 12222333333 566666677777666554
No 353
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.60 E-value=0.04 Score=48.02 Aligned_cols=151 Identities=13% Similarity=0.081 Sum_probs=83.1
Q ss_pred CeEEEEECCCcEEEEECC-CcceEEEee----cccccEE-EEEEecC-CeEEEEeCCCeEEEecCCCCcccceeeEEeeC
Q 013717 223 GLIYSVSWDKSLKIWRAS-DLRCLESIK----AHEDAVN-AVAVSAG-GTVYTGSADRKIRVWAKPFNEKRHALIATLEK 295 (437)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~-~~~~~~~~~----~~~~~v~-~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 295 (437)
+.+.+.+.||.+.-..+. .|+...... ...+++. .-++... +.++.-+.+|.|+-.|+..... +....+..
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~--~~~~~~~~ 225 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSA--KFGKPWSL 225 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSE--EEEEEEES
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcc--cccCcccc
Confidence 678888999999988887 555543321 1122222 2233433 3477788999999988865442 22222221
Q ss_pred c----------cccEEEEEEccCCCEEEEEeCC----------CcEEEEECCCCccceEEeeeecccccceEEEEeeC--
Q 013717 296 H----------KSAVNALALSDDGTVLFSGACD----------RSILVWDREDSANHMVVTGALRGHGKAILCLINVA-- 353 (437)
Q Consensus 296 ~----------~~~i~~~~~~~~~~~l~~~~~d----------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~-- 353 (437)
. .+.-.-+++++..++|++.-.. ..|.+||+.+.++...+.. ...+.++..+.
T Consensus 226 ~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-----~~~~~Si~Vsqd~ 300 (342)
T PF06433_consen 226 LTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-----EHPIDSIAVSQDD 300 (342)
T ss_dssp S-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-----EEEESEEEEESSS
T ss_pred cCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-----CCccceEEEccCC
Confidence 1 1223346777765555553222 1477888887765443321 12344555443
Q ss_pred C-EEEE-EeCCCcEEEeeCCCCCCeeeeeeec
Q 013717 354 G-LLMS-GSADRTVRIWQRGSDGRFGCLAVLE 383 (437)
Q Consensus 354 ~-~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~ 383 (437)
. +|++ ...++.+.+||..+++ .+..+.
T Consensus 301 ~P~L~~~~~~~~~l~v~D~~tGk---~~~~~~ 329 (342)
T PF06433_consen 301 KPLLYALSAGDGTLDVYDAATGK---LVRSIE 329 (342)
T ss_dssp S-EEEEEETTTTEEEEEETTT-----EEEEE-
T ss_pred CcEEEEEcCCCCeEEEEeCcCCc---EEeehh
Confidence 3 5554 4568999999999987 555544
No 354
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.59 E-value=0.074 Score=50.81 Aligned_cols=265 Identities=11% Similarity=0.093 Sum_probs=137.0
Q ss_pred EEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCc--ccEE-EEEEeCCeEEEEe------cCCeEEEEeCCCCc
Q 013717 104 IAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSS--GSVK-SVTFCDGKIFTAH------QDCKIRVWQLTPTK 173 (437)
Q Consensus 104 l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~--~~v~-~l~~~~~~l~s~~------~dg~i~iwd~~~~~ 173 (437)
+++.+..++.++.+ .|.-.|.++++..-..... .+. ..+. .-...++.++.+. .+|.|..+|.++++
T Consensus 116 ~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~---~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~ 192 (527)
T TIGR03075 116 VALYDGKVFFGTLDARLVALDAKTGKVVWSKKNG---DYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGK 192 (527)
T ss_pred ceEECCEEEEEcCCCEEEEEECCCCCEEeecccc---cccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCc
Confidence 34556677778877 9999999987443222221 111 1121 1223355666554 26899999999998
Q ss_pred ccccccccCccccceee-ecCCCCeeEEeeccceeeecCCCcEE-EEEeCC--CeEEEEECC----------------Cc
Q 013717 174 HHKLKTTLPTVNDRLLR-FMLPNSYVTVRRHKKKLWIEHGDAVT-GLAVNN--GLIYSVSWD----------------KS 233 (437)
Q Consensus 174 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~--~~l~~~~~d----------------g~ 233 (437)
........+........ .................+..-...+. .+++++ ++++.+..+ ..
T Consensus 193 ~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s 272 (527)
T TIGR03075 193 LVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSS 272 (527)
T ss_pred eeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCcccee
Confidence 77766655432110000 00000000000000011111122222 335555 455544311 26
Q ss_pred EEEEECCCcceEEEeecccccE---------EEEEEecCCe----EEEEeCCCeEEEecCCCCcccce--ee--EEe---
Q 013717 234 LKIWRASDLRCLESIKAHEDAV---------NAVAVSAGGT----VYTGSADRKIRVWAKPFNEKRHA--LI--ATL--- 293 (437)
Q Consensus 234 i~iwd~~~~~~~~~~~~~~~~v---------~~~~~~~~~~----l~~~~~dg~v~iwd~~~~~~~~~--~~--~~~--- 293 (437)
|.-.|+++|+....++.....+ .-+.+..+|+ ++.+..+|.+.+.|.++++.... .. ..+
T Consensus 273 ~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~ 352 (527)
T TIGR03075 273 IVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATG 352 (527)
T ss_pred EEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccc
Confidence 7788999999988876322211 1222223543 77899999999999876543100 00 000
Q ss_pred -eCc------------------cc-----------cEEEEEEccCCCEEEEEeCC-------------------------
Q 013717 294 -EKH------------------KS-----------AVNALALSDDGTVLFSGACD------------------------- 318 (437)
Q Consensus 294 -~~~------------------~~-----------~i~~~~~~~~~~~l~~~~~d------------------------- 318 (437)
... .. .-..++++|+..+++....+
T Consensus 353 ~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 432 (527)
T TIGR03075 353 VDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTI 432 (527)
T ss_pred cCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceecccccc
Confidence 000 00 00125666666555544333
Q ss_pred --------CcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCC
Q 013717 319 --------RSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 319 --------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 374 (437)
|.|.-+|+.+++.............. .+...+.+++.++.+|.++.+|.++++
T Consensus 433 ~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~---~l~t~g~lvf~g~~~G~l~a~D~~TGe 493 (527)
T TIGR03075 433 KPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGG---VLATAGDLVFYGTLEGYFKAFDAKTGE 493 (527)
T ss_pred CCCCCCCceeEEEEeCCCCceeeEecCCCCCCCc---ceEECCcEEEEECCCCeEEEEECCCCC
Confidence 45777777777655544322111111 133456678888889999999999998
No 355
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.56 E-value=0.00067 Score=64.47 Aligned_cols=105 Identities=16% Similarity=0.122 Sum_probs=79.7
Q ss_pred EEEeCC--CeEEEEE----CCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCccccee
Q 013717 217 GLAVNN--GLIYSVS----WDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHAL 289 (437)
Q Consensus 217 ~~~~~~--~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~ 289 (437)
-..|+| .++++++ ..|.|-||- ++|++..... ..-.+++++|+|... |+.|-.-|.+.+|.... .+.
T Consensus 20 i~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~----~e~ 93 (1416)
T KOG3617|consen 20 ISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNT----TET 93 (1416)
T ss_pred ccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCC----cee
Confidence 346777 6777765 468888884 5666544332 233467899999988 88999999999996532 233
Q ss_pred eEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECC
Q 013717 290 IATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327 (437)
Q Consensus 290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (437)
-.....|..+|..+.|+++|..++++..-|.|.+|...
T Consensus 94 htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 33445689999999999999999999999999999876
No 356
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.56 E-value=0.0003 Score=39.61 Aligned_cols=37 Identities=41% Similarity=0.657 Sum_probs=32.7
Q ss_pred eeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEE
Q 013717 289 LIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD 325 (437)
Q Consensus 289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 325 (437)
....+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4556667888999999999999999999999999996
No 357
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.55 E-value=0.00015 Score=58.02 Aligned_cols=141 Identities=16% Similarity=0.153 Sum_probs=82.3
Q ss_pred EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccc
Q 013717 266 VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKA 345 (437)
Q Consensus 266 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 345 (437)
+..-+.+|.|+-++++........ -..+... .....-+..+++|+.+|.|++|......... .....-...
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rs---e~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~---d~~~s~~e~ 103 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRS---ERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHS---DRVCSGEES 103 (238)
T ss_pred hccccCCcccccchhhhhhhhhhh---hhhhhcc---eeecccCceEEeecccceEEEecCCccchHH---Hhhhccccc
Confidence 556677888888776532211111 0111111 1111235578999999999999986221111 111112334
Q ss_pred eEEEEeeCC---EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCC-CCeeEEEEEccCCCCceEEEEEe--cCCCcEEEEe
Q 013717 346 ILCLINVAG---LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHT-KPVKSLTAVTEEGQNGVVSVFSG--SLDGEIRAWQ 419 (437)
Q Consensus 346 i~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~l~s~--~~dg~i~iw~ 419 (437)
|.+..+.++ +..++..||.||.|++...+ .+.....|. .++.....+..+ +++..+ |.|..++.|+
T Consensus 104 i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k---~~g~~g~h~~~~~e~~ivv~sd-----~~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 104 IDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK---VLGYVGQHNFESGEELIVVGSD-----EFLKIADTSHDRVLKKWN 175 (238)
T ss_pred ceeccccccccceeEEeccCCceeeeccccCc---eeeeeccccCCCcceeEEecCC-----ceEEeeccccchhhhhcc
Confidence 444444433 88899999999999998765 455555566 455554444443 267777 7788888888
Q ss_pred eccC
Q 013717 420 VSVS 423 (437)
Q Consensus 420 ~~~~ 423 (437)
+..-
T Consensus 176 ve~~ 179 (238)
T KOG2444|consen 176 VEKI 179 (238)
T ss_pred hhhh
Confidence 7654
No 358
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.041 Score=46.31 Aligned_cols=280 Identities=11% Similarity=0.145 Sum_probs=165.4
Q ss_pred CccCCeEEEEeeCCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCCcc
Q 013717 96 GHKLPIGCIAVHHNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPTKH 174 (437)
Q Consensus 96 ~h~~~V~~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~~~ 174 (437)
.-.+-+..+.+++++...+..+ -++|.|+.+...-.+..+ -.-.+--.++..+++....+..|.-+.+.|+.+.+.
T Consensus 84 ~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~---lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 84 NARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGF---LNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred ehhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceecc---ccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCC
Confidence 5667778888889999999988 999999988533222222 112255567777788766676566677889987654
Q ss_pred cccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcce---EEEeecc
Q 013717 175 HKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRC---LESIKAH 251 (437)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~ 251 (437)
....... .........++.+.++...+..|+-+.+.|+..... +... ..
T Consensus 161 P~lagry---------------------------a~~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~-n~ 212 (370)
T COG5276 161 PQLAGRY---------------------------ALPGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSY-NT 212 (370)
T ss_pred ceeeeee---------------------------ccCCCCceeEEEecCeEEEEEeCCCeEEEEccCCCCCeEEEEE-ec
Confidence 3332211 123334467888888999999999999999976532 2222 23
Q ss_pred cccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCcccc--EEEEEEccCCCEEEEEeCCCcEEEEECCCC
Q 013717 252 EDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSA--VNALALSDDGTVLFSGACDRSILVWDREDS 329 (437)
Q Consensus 252 ~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 329 (437)
...+.++..+++..+++....| +.+-|..... ........+ ...+ ++.+.. .+++...+..+.-+.+-|+.+.
T Consensus 213 g~g~~sv~vsdnr~y~vvy~eg-vlivd~s~~s-sp~~~gsye-t~~p~~~s~v~V--s~~~~Yvadga~gl~~idisnp 287 (370)
T COG5276 213 GPGTYSVSVSDNRAYLVVYDEG-VLIVDVSGPS-SPTVFGSYE-TSNPVSISTVPV--SGEYAYVADGAKGLPIIDISNP 287 (370)
T ss_pred CCceEEEEecCCeeEEEEcccc-eEEEecCCCC-CceEeeccc-cCCcccccceec--ccceeeeeccccCceeEeccCC
Confidence 4478888887665566655555 4455554222 112222222 2222 222333 4677777777888888898876
Q ss_pred ccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEe
Q 013717 330 ANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSG 409 (437)
Q Consensus 330 ~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~ 409 (437)
..... ...+.........+...++++..+..+ ...+-+....+ ......+....+.+.+.+-+. +.+.+.
T Consensus 288 ~spfl-~ss~~t~g~~a~gi~ay~~y~yiadkn-~g~vV~~s~~s---~m~~~~g~~ti~~s~~v~~~~-----q~~y~~ 357 (370)
T COG5276 288 PSPFL-SSSLDTAGYQAAGIRAYGNYNYIADKN-TGAVVDASPPS---MMDKRPGRPTIGQSCDVSVDT-----QIIYST 357 (370)
T ss_pred CCCch-hccccCCCccccceEEecCeeEeccCC-ceEEEeCCChh---hcccccCcceEeeecceEEEe-----eEEEEe
Confidence 54432 222222233445666667766666665 45555655433 111111111222333333333 368888
Q ss_pred cCCCcEEEEeec
Q 013717 410 SLDGEIRAWQVS 421 (437)
Q Consensus 410 ~~dg~i~iw~~~ 421 (437)
..++-+.+|+..
T Consensus 358 d~~~gl~i~~~~ 369 (370)
T COG5276 358 DYNGGLSIIEYL 369 (370)
T ss_pred ecCCCEEEEEec
Confidence 899999999863
No 359
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.0005 Score=63.13 Aligned_cols=92 Identities=16% Similarity=0.137 Sum_probs=73.0
Q ss_pred CCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEE-EEEEecCCe-EEEEeCCCeEEEecCCCCcccc
Q 013717 212 GDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVN-AVAVSAGGT-VYTGSADRKIRVWAKPFNEKRH 287 (437)
Q Consensus 212 ~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~ 287 (437)
...|.-+.|+| ..+|.+..+|.|.+..+. .+.+.++..+...++ +++|.|||+ +++|-.||+|++-|+..+...
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l- 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL- 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce-
Confidence 45678889999 999999999999999987 888888886666777 999999999 999999999999998765521
Q ss_pred eeeEEeeCccccEEEEEEcc
Q 013717 288 ALIATLEKHKSAVNALALSD 307 (437)
Q Consensus 288 ~~~~~~~~~~~~i~~~~~~~ 307 (437)
..........|.++-|.+
T Consensus 98 --~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 --VSFLFSVETDISKGIWDR 115 (665)
T ss_pred --eccccccccchheeeccc
Confidence 111222456677777763
No 360
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.52 E-value=0.0054 Score=59.94 Aligned_cols=134 Identities=11% Similarity=0.126 Sum_probs=90.9
Q ss_pred eEEEEeCCCCceeeeeccccCCCCc-ccEEEEEEe-------CCeEEEEecCCeEEEEeCCCCcccccccccCcccccee
Q 013717 118 EINVYDRTGTTWTSINTFNDNDSSS-GSVKSVTFC-------DGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLL 189 (437)
Q Consensus 118 ~v~vwd~~~~~~~~~~~~~~~~~h~-~~v~~l~~~-------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 189 (437)
.|+-.|++.| +.+..+. .|. .+|..++-. +...+.|-.+..+..||.+-.... ....
T Consensus 505 ~ly~mDLe~G--KVV~eW~---~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k-~v~~--------- 569 (794)
T PF08553_consen 505 KLYKMDLERG--KVVEEWK---VHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK-LVDS--------- 569 (794)
T ss_pred ceEEEecCCC--cEEEEee---cCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCc-eeec---------
Confidence 8888888885 4555553 233 336666543 233677777888999998853211 0000
Q ss_pred eecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEE
Q 013717 190 RFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYT 268 (437)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ 268 (437)
..+. ........|++-.. ++||+|+.+|.||+||--..+....+.+...+|..|..+.||+.+.
T Consensus 570 --------------~~k~-Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwil 634 (794)
T PF08553_consen 570 --------------QSKQ-YSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWIL 634 (794)
T ss_pred --------------cccc-cccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEE
Confidence 0000 12455677888887 9999999999999999543333444557789999999999999777
Q ss_pred EeCCCeEEEecCC
Q 013717 269 GSADRKIRVWAKP 281 (437)
Q Consensus 269 ~~~dg~v~iwd~~ 281 (437)
|+.+..|.+++..
T Consensus 635 aTc~tyLlLi~t~ 647 (794)
T PF08553_consen 635 ATCKTYLLLIDTL 647 (794)
T ss_pred EeecceEEEEEEe
Confidence 7778888888753
No 361
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.49 E-value=0.00033 Score=39.42 Aligned_cols=38 Identities=37% Similarity=0.563 Sum_probs=32.9
Q ss_pred eeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEe
Q 013717 377 GCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ 419 (437)
Q Consensus 377 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~ 419 (437)
.+...+..|...|.++.|.+.+. ++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGK-----YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCC-----EEEEecCCCeEEEcC
Confidence 35677778999999999998773 799999999999996
No 362
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.47 E-value=0.031 Score=53.80 Aligned_cols=191 Identities=17% Similarity=0.254 Sum_probs=102.2
Q ss_pred EEEeCC-CeEEEEECC------CcEEEEECCCcceEEE--eecccccEEEEEEecCCe-EEEEeCCCe-----EEEecCC
Q 013717 217 GLAVNN-GLIYSVSWD------KSLKIWRASDLRCLES--IKAHEDAVNAVAVSAGGT-VYTGSADRK-----IRVWAKP 281 (437)
Q Consensus 217 ~~~~~~-~~l~~~~~d------g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~-l~~~~~dg~-----v~iwd~~ 281 (437)
++++.+ ...++|+.| ..+..||..+.+-... +...... .+++. -+|. .++|+.||. +-.||..
T Consensus 327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~-~~v~~-l~g~iYavGG~dg~~~l~svE~YDp~ 404 (571)
T KOG4441|consen 327 GVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSD-FGVAV-LDGKLYAVGGFDGEKSLNSVECYDPV 404 (571)
T ss_pred cEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCcccc-ceeEE-ECCEEEEEeccccccccccEEEecCC
Confidence 444444 677888888 3577888877653331 1111111 12222 2666 788888864 6677765
Q ss_pred CCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC------cEEEEECCCCccceEEeeeecccccceEEEEeeCCE
Q 013717 282 FNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR------SILVWDREDSANHMVVTGALRGHGKAILCLINVAGL 355 (437)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 355 (437)
++. +..+..+.......-.+.+ +|+..++|+.++ ++..||..+.+. ..................++.+
T Consensus 405 ~~~--W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W--~~~~~M~~~R~~~g~a~~~~~i 478 (571)
T KOG4441|consen 405 TNK--WTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTW--TLIAPMNTRRSGFGVAVLNGKI 478 (571)
T ss_pred CCc--ccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCce--eecCCcccccccceEEEECCEE
Confidence 433 3333322221222222222 577778887554 567888877542 2222222222222344455667
Q ss_pred EEEEeCCCc-----EEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCc-----EEEEeeccC
Q 013717 356 LMSGSADRT-----VRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGE-----IRAWQVSVS 423 (437)
Q Consensus 356 l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~-----i~iw~~~~~ 423 (437)
.+.|+.|+. |..||..+.+ |..+..+......+.... .++ ++.+.|+.||. |..||..+.
T Consensus 479 YvvGG~~~~~~~~~VE~ydp~~~~-W~~v~~m~~~rs~~g~~~---~~~----~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 479 YVVGGFDGTSALSSVERYDPETNQ-WTMVAPMTSPRSAVGVVV---LGG----KLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred EEECCccCCCccceEEEEcCCCCc-eeEcccCccccccccEEE---ECC----EEEEEecccCccccceeEEcCCCCC
Confidence 888887763 7778888755 444444443333332222 222 37888888875 556665544
No 363
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.092 Score=48.05 Aligned_cols=221 Identities=14% Similarity=0.108 Sum_probs=128.9
Q ss_pred EEEEEEeCCe---EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717 145 VKSVTFCDGK---IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN 221 (437)
Q Consensus 145 v~~l~~~~~~---l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 221 (437)
-..++.++.. ++....++.|.+.|..+........ .+. ....++++
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~-----------------------------vG~--~P~~~~~~ 124 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIP-----------------------------VGL--GPVGLAVD 124 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEee-----------------------------ecc--CCceEEEC
Confidence 3455555332 5555567889999966554322221 112 34566776
Q ss_pred C--CeEEEEEC---CCcEEEEECCCcceEEEeecccccEEEEEEecCCe-E-EEEeCCCeEEEecCCCCcccceeeEEee
Q 013717 222 N--GLIYSVSW---DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-V-YTGSADRKIRVWAKPFNEKRHALIATLE 294 (437)
Q Consensus 222 ~--~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~ 294 (437)
+ +.++.+.. ++++.+.|..+.+.+........+ ..+++.|+|. + ++-..++.|.++|...............
T Consensus 125 ~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~ 203 (381)
T COG3391 125 PDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLV 203 (381)
T ss_pred CCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccc
Confidence 6 55555554 789999999999888886543344 8899999998 4 4444789999998654431100000011
Q ss_pred CccccEEEEEEccCCCEEEEEeCC---CcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEe-CCCcEEEeeC
Q 013717 295 KHKSAVNALALSDDGTVLFSGACD---RSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGS-ADRTVRIWQR 370 (437)
Q Consensus 295 ~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~-~dg~i~iwd~ 370 (437)
.-......+.++|+|+++.+.... +.+...|..++.........-.. ...-..+.+.+..+.+.. ..+.+.+-|.
T Consensus 204 ~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~ 282 (381)
T COG3391 204 GVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDG 282 (381)
T ss_pred ccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeC
Confidence 223445778999999977666554 58888898765422211111111 222345566677666653 3578999998
Q ss_pred CCCCCeeeeeeecCCCCCeeEEEEEccC
Q 013717 371 GSDGRFGCLAVLEGHTKPVKSLTAVTEE 398 (437)
Q Consensus 371 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 398 (437)
.+............-...+..+++.+..
T Consensus 283 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 310 (381)
T COG3391 283 ATDRVVKTGPTGNEALGEPVSIAISPLY 310 (381)
T ss_pred CCCceeeeecccccccccceeccceeec
Confidence 8766322222223223345566665543
No 364
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0017 Score=59.83 Aligned_cols=94 Identities=16% Similarity=0.087 Sum_probs=70.8
Q ss_pred cccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEE-EEEEccCCCEEEEEeCCCcEEEEECCCC
Q 013717 252 EDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVN-ALALSDDGTVLFSGACDRSILVWDREDS 329 (437)
Q Consensus 252 ~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 329 (437)
...+.-+.|+|.-. +|.+..+|.|.+..+. ++.+..+.-++..++ +++|.|||+.|+.|-.||+|++.|++++
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-----~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~ 94 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-----WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG 94 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-----cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC
Confidence 34678889999888 9999999999998654 345666665666666 9999999999999999999999999987
Q ss_pred ccceEEeeeecccccceEEEEeeC
Q 013717 330 ANHMVVTGALRGHGKAILCLINVA 353 (437)
Q Consensus 330 ~~~~~~~~~~~~~~~~i~~~~~~~ 353 (437)
...... ...-...|.+..|+.
T Consensus 95 ~~l~~~---~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 95 GRLVSF---LFSVETDISKGIWDR 115 (665)
T ss_pred Cceecc---ccccccchheeeccc
Confidence 643332 122344556666653
No 365
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.17 E-value=0.14 Score=44.64 Aligned_cols=281 Identities=12% Similarity=0.105 Sum_probs=125.6
Q ss_pred CccCCeEEEEee--CCEEEEEecCeEEEEeCCCC-ceeeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCCCC
Q 013717 96 GHKLPIGCIAVH--HNFLYAASSHEINVYDRTGT-TWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLTPT 172 (437)
Q Consensus 96 ~h~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~~~ 172 (437)
+-...+..|+|. ..-+++|..+.| +-..+.+ .++....- ....-.-...+|.|.++....++..+. .+--.+.+
T Consensus 14 ~t~~~l~dV~F~d~~~G~~VG~~g~i-l~T~DGG~tW~~~~~~-~~~~~~~~l~~I~f~~~~g~ivG~~g~-ll~T~DgG 90 (302)
T PF14870_consen 14 PTDKPLLDVAFVDPNHGWAVGAYGTI-LKTTDGGKTWQPVSLD-LDNPFDYHLNSISFDGNEGWIVGEPGL-LLHTTDGG 90 (302)
T ss_dssp S-SS-EEEEEESSSS-EEEEETTTEE-EEESSTTSS-EE------S-----EEEEEEEETTEEEEEEETTE-EEEESSTT
T ss_pred CCCCceEEEEEecCCEEEEEecCCEE-EEECCCCccccccccC-CCccceeeEEEEEecCCceEEEcCCce-EEEecCCC
Confidence 556689999998 455555555433 2222222 34443321 001112356788888766444555564 34444445
Q ss_pred cccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcce-EEEeecc
Q 013717 173 KHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRC-LESIKAH 251 (437)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~ 251 (437)
+....+...... ......-....+.....++..|.|..=. ..++. .......
T Consensus 91 ~tW~~v~l~~~l--------------------------pgs~~~i~~l~~~~~~l~~~~G~iy~T~-DgG~tW~~~~~~~ 143 (302)
T PF14870_consen 91 KTWERVPLSSKL--------------------------PGSPFGITALGDGSAELAGDRGAIYRTT-DGGKTWQAVVSET 143 (302)
T ss_dssp SS-EE----TT---------------------------SS-EEEEEEEETTEEEEEETT--EEEES-STTSSEEEEE-S-
T ss_pred CCcEEeecCCCC--------------------------CCCeeEEEEcCCCcEEEEcCCCcEEEeC-CCCCCeeEcccCC
Confidence 443332210000 1111222233344444455555543322 22222 2222345
Q ss_pred cccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCc
Q 013717 252 EDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSA 330 (437)
Q Consensus 252 ~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 330 (437)
.+.+..+..+++|. ++++.....+.-||- ....+.+.. +.....|..|.|.|++.+.+.+ ..|.|+.=+.....
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~--G~~~w~~~~--r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDP--GQTTWQPHN--RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-T--T-SS-EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecC--CCccceEEc--cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 57788888899999 445544444557753 222233322 2346789999999998776655 88888887722111
Q ss_pred cce-EEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEE
Q 013717 331 NHM-VVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFS 408 (437)
Q Consensus 331 ~~~-~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s 408 (437)
... ............+..+++.++ .+.+++..|.+ +.....++.++.......-...++.|.|.++. .-+.
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~------~gf~ 291 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPD------KGFV 291 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETT------EEEE
T ss_pred cccccccCCcccCceeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCC------ceEE
Confidence 111 111111122334688888754 55556666644 44566677666655555556678899998765 3556
Q ss_pred ecCCCcEEEE
Q 013717 409 GSLDGEIRAW 418 (437)
Q Consensus 409 ~~~dg~i~iw 418 (437)
.+.+|.|.-|
T Consensus 292 lG~~G~ll~~ 301 (302)
T PF14870_consen 292 LGQDGVLLRY 301 (302)
T ss_dssp E-STTEEEEE
T ss_pred ECCCcEEEEe
Confidence 6778887655
No 366
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.16 E-value=0.1 Score=49.59 Aligned_cols=255 Identities=10% Similarity=0.054 Sum_probs=126.9
Q ss_pred EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeec-cceeee--cCCCcE--EEEEeCCCeEEEEE
Q 013717 155 IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRH-KKKLWI--EHGDAV--TGLAVNNGLIYSVS 229 (437)
Q Consensus 155 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~v--~~~~~~~~~l~~~~ 229 (437)
|.+|+..|.++++-+.+++.+..+..+......-..+......+.-... ...... .|.-.+ +.-.++.++++.-.
T Consensus 69 f~SgG~sG~~~v~G~PSmr~l~~ipvf~~~~~~G~G~~~esk~~l~~~~~~~~~~~gD~HHp~~s~t~g~ydGr~~find 148 (635)
T PRK02888 69 FWSGGHSGEVRILGLPSMRELMRIPVFNRDSATGWGITNESKKVLGEGARGGKYLNGDTHHPHMSFTDGTYDGRYLFIND 148 (635)
T ss_pred EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHhhccccCCcccCCCcCCCcccccCCccceeEEEEec
Confidence 8899999999999999988766655443222211111111110000000 000000 011111 11122336666655
Q ss_pred C-CCcEEEEECCCcceEEEee-cccccEEE-------------------EEEecCCe-EE-EEeCCCeEEEecCCCCccc
Q 013717 230 W-DKSLKIWRASDLRCLESIK-AHEDAVNA-------------------VAVSAGGT-VY-TGSADRKIRVWAKPFNEKR 286 (437)
Q Consensus 230 ~-dg~i~iwd~~~~~~~~~~~-~~~~~v~~-------------------~~~~~~~~-l~-~~~~dg~v~iwd~~~~~~~ 286 (437)
. +..|...+++..++-+.+. .....+.. +-+.|||+ +. ..-..+.+.+.|..+.
T Consensus 149 k~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etm--- 225 (635)
T PRK02888 149 KANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETM--- 225 (635)
T ss_pred CCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccc---
Confidence 3 5567677776665544332 11111222 22344555 21 2223456666665432
Q ss_pred ceeeEEeeCccccEEEEEEccCCCEEEEEeC----------------------------------------CCcEEEEEC
Q 013717 287 HALIATLEKHKSAVNALALSDDGTVLFSGAC----------------------------------------DRSILVWDR 326 (437)
Q Consensus 287 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------------------------------------dg~i~i~d~ 326 (437)
+...++.- ......++++|+|+++++.+. ++.|.+.|.
T Consensus 226 -eV~~qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~ 303 (635)
T PRK02888 226 -EVAWQVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDG 303 (635)
T ss_pred -eEEEEEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECCCEEEEEEC
Confidence 22232221 224466778888888877651 234566665
Q ss_pred CC----CccceEEeeeecccccceEEEEeeCCE-EEEEeCCCcEEEeeCCCCCC---------eeeeeeecCCCCCeeEE
Q 013717 327 ED----SANHMVVTGALRGHGKAILCLINVAGL-LMSGSADRTVRIWQRGSDGR---------FGCLAVLEGHTKPVKSL 392 (437)
Q Consensus 327 ~~----~~~~~~~~~~~~~~~~~i~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~---------~~~~~~~~~h~~~v~~l 392 (437)
++ +... ......+....=..+++++.+ ++++..+.++.|.|+...+. .....+..--.++ ...
T Consensus 304 ~t~~~~~~~v--~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHT 380 (635)
T PRK02888 304 RKAANAGSAL--TRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHT 380 (635)
T ss_pred CccccCCcce--EEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-ceE
Confidence 54 1111 111111111222445566665 45555689999999987442 0122333322333 355
Q ss_pred EEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717 393 TAVTEEGQNGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 393 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
+|.+++. ...|---|..|..|++..
T Consensus 381 aFDg~G~-----aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 381 AFDGRGN-----AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EECCCCC-----EEEeEeecceeEEEehHH
Confidence 6877763 678888899999999987
No 367
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.14 Score=43.18 Aligned_cols=242 Identities=14% Similarity=0.167 Sum_probs=149.6
Q ss_pred Ccc-CCeEEEEeeCCEEEEEecCeEE---EEeCCCCce-eeeeccccCCCCcccEEEEEEeCCeEEEEecCCeEEEEeCC
Q 013717 96 GHK-LPIGCIAVHHNFLYAASSHEIN---VYDRTGTTW-TSINTFNDNDSSSGSVKSVTFCDGKIFTAHQDCKIRVWQLT 170 (437)
Q Consensus 96 ~h~-~~V~~l~~~~~~l~s~~~d~v~---vwd~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iwd~~ 170 (437)
||- +.|..+...+.+-..+....+. +|+...... ..+..+ .-.+-+..+.++.+....+..+.-+++.|+.
T Consensus 39 ghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i----~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS 114 (370)
T COG5276 39 GHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVI----NARDLFADVRVSEEYVYVADWSSGLRIVDIS 114 (370)
T ss_pred eeccCCcccccccccccccccCceEeeccccCcccccCcceEEEE----ehhhhhheeEecccEEEEEcCCCceEEEecc
Confidence 776 7788888876665555544444 444432111 111111 2356677888888887777788889999999
Q ss_pred CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcc---eEEE
Q 013717 171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLR---CLES 247 (437)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~ 247 (437)
+......+..++ ..+.-.++..+.++...+..|.-+.+.|+.+.. ....
T Consensus 115 ~P~sP~~~~~ln----------------------------t~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~lagr 166 (370)
T COG5276 115 TPDSPTLIGFLN----------------------------TDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLAGR 166 (370)
T ss_pred CCCCcceecccc----------------------------CCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceeeee
Confidence 877655554332 335667888888999999877778888887643 2333
Q ss_pred eecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECC
Q 013717 248 IKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327 (437)
Q Consensus 248 ~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (437)
+......-..++++-+ .-..+..|+-+.+.|+... ....++.... ....+.++..+++-.+++.. +.-+.+-|..
T Consensus 167 ya~~~~d~~~v~ISGn-~AYvA~~d~GL~ivDVSnp-~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy--~egvlivd~s 241 (370)
T COG5276 167 YALPGGDTHDVAISGN-YAYVAWRDGGLTIVDVSNP-HSPVLIGSYN-TGPGTYSVSVSDNRAYLVVY--DEGVLIVDVS 241 (370)
T ss_pred eccCCCCceeEEEecC-eEEEEEeCCCeEEEEccCC-CCCeEEEEEe-cCCceEEEEecCCeeEEEEc--ccceEEEecC
Confidence 3333444456666522 2455567888999998743 2333333322 33478888888775555554 3447888887
Q ss_pred CCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCC
Q 013717 328 DSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 374 (437)
+.+....+-.........+..+...+++......+.-+.+-|+.+..
T Consensus 242 ~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~ 288 (370)
T COG5276 242 GPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPP 288 (370)
T ss_pred CCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCC
Confidence 76655443222222223344557778877777777778888877644
No 368
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.07 E-value=0.2 Score=45.49 Aligned_cols=121 Identities=19% Similarity=0.172 Sum_probs=63.4
Q ss_pred cccEEEEEEccCCCEEEEEeC--C---CcEEEEECCCCccceEEeeeecccccceEEEEe---eCC-EEEEEeCCCcEEE
Q 013717 297 KSAVNALALSDDGTVLFSGAC--D---RSILVWDREDSANHMVVTGALRGHGKAILCLIN---VAG-LLMSGSADRTVRI 367 (437)
Q Consensus 297 ~~~i~~~~~~~~~~~l~~~~~--d---g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~-~l~~~~~dg~i~i 367 (437)
...+..+.|.++++.|+..-. + ..+.++|..++...........+--.....+.+ .+. +|.....||.-+|
T Consensus 183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hl 262 (353)
T PF00930_consen 183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHL 262 (353)
T ss_dssp SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEE
T ss_pred ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEE
Confidence 445788999999884444322 2 346777887765554443322221111112222 233 6666668886555
Q ss_pred eeCCCCCCeeeeeeecCCCCCeeE-EEEEccCCCCceEEEEEecCC--CcEEEEeeccC
Q 013717 368 WQRGSDGRFGCLAVLEGHTKPVKS-LTAVTEEGQNGVVSVFSGSLD--GEIRAWQVSVS 423 (437)
Q Consensus 368 wd~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~~~~~l~s~~~d--g~i~iw~~~~~ 423 (437)
|-+.... .....+....-.|+. +.+.++++ .+.+++..+ +.-.+|.+...
T Consensus 263 y~~~~~~--~~~~~lT~G~~~V~~i~~~d~~~~----~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 263 YLYDLDG--GKPRQLTSGDWEVTSILGWDEDNN----RIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp EEEETTS--SEEEESS-SSS-EEEEEEEECTSS----EEEEEESSGGTTSBEEEEEETT
T ss_pred EEEcccc--cceeccccCceeecccceEcCCCC----EEEEEecCCCCCceEEEEEEeC
Confidence 5444322 234466656667866 44555544 366666653 35566655544
No 369
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.06 E-value=0.18 Score=43.88 Aligned_cols=239 Identities=13% Similarity=0.132 Sum_probs=127.0
Q ss_pred eCCEEEEEecCeEEEEeCC-CCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCcc
Q 013717 107 HHNFLYAASSHEINVYDRT-GTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPTV 184 (437)
Q Consensus 107 ~~~~l~s~~~d~v~vwd~~-~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~ 184 (437)
.++.|+.|..+-+.+++.. ......+. +...|..|...++. ++..-.|+.+.++++..-............
T Consensus 6 ~~~~L~vGt~~Gl~~~~~~~~~~~~~i~-------~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~ 78 (275)
T PF00780_consen 6 WGDRLLVGTEDGLYVYDLSDPSKPTRIL-------KLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFP 78 (275)
T ss_pred CCCEEEEEECCCEEEEEecCCccceeEe-------ecceEEEEEEecccCEEEEEcCCccEEEEchhhcccccccccccc
Confidence 3888999977788889883 22222222 33449999998765 444444699999998865433211100000
Q ss_pred ccceeeecCCCCeeEEeeccceeeecCCCcEEEEE----eCCCeEEEEECCCcEEEEECCCc-----ceEEEeecccccE
Q 013717 185 NDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLA----VNNGLIYSVSWDKSLKIWRASDL-----RCLESIKAHEDAV 255 (437)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~v 255 (437)
.. .....-......+..++ ......+.......|.+|..... +...++. ....+
T Consensus 79 ~~----------------~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~ 141 (275)
T PF00780_consen 79 KS----------------RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPP 141 (275)
T ss_pred cc----------------ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCc
Confidence 00 00000011223344444 11133344444558888887653 3445554 45778
Q ss_pred EEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeC----------ccccEEEEEEccCCCEEEEEeCCCcEEEEE
Q 013717 256 NAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEK----------HKSAVNALALSDDGTVLFSGACDRSILVWD 325 (437)
Q Consensus 256 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 325 (437)
.+++|. ++.++.|..+ ...+.|+.+... ..+..... ...++..+... ++.+|++- |..-...|
T Consensus 142 ~~i~~~-~~~i~v~~~~-~f~~idl~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~--~~~g~fv~ 214 (275)
T PF00780_consen 142 SSIAFL-GNKICVGTSK-GFYLIDLNTGSP--SELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCY--DNIGVFVN 214 (275)
T ss_pred EEEEEe-CCEEEEEeCC-ceEEEecCCCCc--eEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEe--cceEEEEc
Confidence 999998 3446666654 467778764332 11111111 11233344443 45566653 33344445
Q ss_pred CCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecC
Q 013717 326 REDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEG 384 (437)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 384 (437)
... +......-.+ ......+.+...+|++.+.++ |.||++.+++ +++.+..
T Consensus 215 ~~G-~~~r~~~i~W---~~~p~~~~~~~pyli~~~~~~-iEV~~~~~~~---lvQ~i~~ 265 (275)
T PF00780_consen 215 KNG-EPSRKSTIQW---SSAPQSVAYSSPYLIAFSSNS-IEVRSLETGE---LVQTIPL 265 (275)
T ss_pred CCC-CcCcccEEEc---CCchhEEEEECCEEEEECCCE-EEEEECcCCc---EEEEEEC
Confidence 433 2222111112 234567777777888777655 9999999986 6666654
No 370
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.0036 Score=61.42 Aligned_cols=99 Identities=18% Similarity=0.290 Sum_probs=67.3
Q ss_pred EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccc
Q 013717 266 VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKA 345 (437)
Q Consensus 266 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 345 (437)
++.|+..|.+...|+..+-. ....-....++|++++|+.+|+.++.|-.+|.|.+||+..++....+......+.+.
T Consensus 102 ivi~Ts~ghvl~~d~~~nL~---~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGNLG---PLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred EEEEcCchhhhhhhhhcccc---hhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 88999999999998875421 122233456899999999999999999999999999998765443332222222333
Q ss_pred eEEEEeeCC-EEEEEeCCCcEEEee
Q 013717 346 ILCLINVAG-LLMSGSADRTVRIWQ 369 (437)
Q Consensus 346 i~~~~~~~~-~l~~~~~dg~i~iwd 369 (437)
+.....+++ .++++...|. +|.
T Consensus 179 i~v~~t~~nS~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 179 IFVGRTSQNSKLLTSDTGGS--FWK 201 (1206)
T ss_pred EEEEEeCCCcEEEEccCCCc--eEE
Confidence 333333334 5777777775 554
No 371
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.00 E-value=0.15 Score=42.15 Aligned_cols=138 Identities=9% Similarity=0.047 Sum_probs=88.4
Q ss_pred EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEe-CCCeEEEEECCCc
Q 013717 155 IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAV-NNGLIYSVSWDKS 233 (437)
Q Consensus 155 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~ 233 (437)
++.|+..+.+.--|..+++...... -..+|.+-+. -.++++.|+..|.
T Consensus 26 v~igSHs~~~~avd~~sG~~~We~i-------------------------------lg~RiE~sa~vvgdfVV~GCy~g~ 74 (354)
T KOG4649|consen 26 VVIGSHSGIVIAVDPQSGNLIWEAI-------------------------------LGVRIECSAIVVGDFVVLGCYSGG 74 (354)
T ss_pred EEEecCCceEEEecCCCCcEEeehh-------------------------------hCceeeeeeEEECCEEEEEEccCc
Confidence 7888888888888888876443322 2223332222 3478999999999
Q ss_pred EEEEECCCcceEEEeecccccEEE-EEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCE
Q 013717 234 LKIWRASDLRCLESIKAHEDAVNA-VAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTV 311 (437)
Q Consensus 234 i~iwd~~~~~~~~~~~~~~~~v~~-~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 311 (437)
+++.+..+|.....+.... .|.+ ....+++. +..|+.|+..+..|.++.. .+...+...+...+-+..|-...
T Consensus 75 lYfl~~~tGs~~w~f~~~~-~vk~~a~~d~~~glIycgshd~~~yalD~~~~~----cVykskcgG~~f~sP~i~~g~~s 149 (354)
T KOG4649|consen 75 LYFLCVKTGSQIWNFVILE-TVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYG----CVYKSKCGGGTFVSPVIAPGDGS 149 (354)
T ss_pred EEEEEecchhheeeeeehh-hhccceEEcCCCceEEEecCCCcEEEecccccc----eEEecccCCceeccceecCCCce
Confidence 9999999998888776332 2222 23456666 9999999999999876543 45444444444444455563334
Q ss_pred EEEEeCCCcEEEEECCC
Q 013717 312 LFSGACDRSILVWDRED 328 (437)
Q Consensus 312 l~~~~~dg~i~i~d~~~ 328 (437)
|..+...|.+.--..+.
T Consensus 150 ly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 150 LYAAITAGAVLAVTKNP 166 (354)
T ss_pred EEEEeccceEEEEccCC
Confidence 45555566665555543
No 372
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.98 E-value=0.45 Score=47.16 Aligned_cols=178 Identities=15% Similarity=0.173 Sum_probs=106.5
Q ss_pred cEEEEECCCcceEEEeec-c---cccEEEEEEecC-Ce-EEEEeC----------CCeEEEecCCCCcccceeeEEeeCc
Q 013717 233 SLKIWRASDLRCLESIKA-H---EDAVNAVAVSAG-GT-VYTGSA----------DRKIRVWAKPFNEKRHALIATLEKH 296 (437)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~-~---~~~v~~~~~~~~-~~-l~~~~~----------dg~v~iwd~~~~~~~~~~~~~~~~~ 296 (437)
.++++|-.+.+.+...+- . .-.|.+..|..| +. +++|+. .|.|.+|.+.. ....+.+.... -
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~v~e~~-v 828 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLELVAETV-V 828 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCceeeeeeee-e
Confidence 366777666665544331 1 123444557766 44 677652 57788886654 22223333322 2
Q ss_pred cccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccce--EEEEeeCCEEEEEeCCCcEEEeeCCCCC
Q 013717 297 KSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAI--LCLINVAGLLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 297 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 374 (437)
.+.+.++..- +|+++|. -+..|++|++...+... ....+...+ ..+...++.+++|.--+.+.+-..+..+
T Consensus 829 ~Gav~aL~~f-ngkllA~--In~~vrLye~t~~~eLr----~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 829 KGAVYALVEF-NGKLLAG--INQSVRLYEWTTERELR----IECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred ccceeehhhh-CCeEEEe--cCcEEEEEEccccceeh----hhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccC
Confidence 3455555433 5666654 45689999997764222 223344444 4555678899999998888776665433
Q ss_pred -CeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCCC
Q 013717 375 -RFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCPN 426 (437)
Q Consensus 375 -~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 426 (437)
.+..++. .-+..+++++.+..++ .++-+..+|.+++-..+...+.
T Consensus 902 g~f~evAr-D~~p~Wmtaveil~~d------~ylgae~~gNlf~v~~d~~~~t 947 (1096)
T KOG1897|consen 902 GNFEEVAR-DYNPNWMTAVEILDDD------TYLGAENSGNLFTVRKDSDATT 947 (1096)
T ss_pred CceEEeeh-hhCccceeeEEEecCc------eEEeecccccEEEEEecCCCCc
Confidence 1222222 2367788999888876 5677778899999887765443
No 373
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.023 Score=51.69 Aligned_cols=138 Identities=17% Similarity=0.221 Sum_probs=92.3
Q ss_pred eEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe--------EEEEeCCCeEEEecCCCCcccceeeEEeeC
Q 013717 224 LIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT--------VYTGSADRKIRVWAKPFNEKRHALIATLEK 295 (437)
Q Consensus 224 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--------l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~ 295 (437)
++..+.....++-.|++.|+.+.+++-+.. |+-+.+.|+.+ -+.|-.+..|.-||.+..... .+...+.
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~--kl~~~q~ 424 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN--KLAVVQS 424 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc--eeeeeec
Confidence 345566667789999999999999986665 77788888764 345667889999998744321 1222222
Q ss_pred ----ccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEE--eeCCEEEEEeCCCcEEEee
Q 013717 296 ----HKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLI--NVAGLLMSGSADRTVRIWQ 369 (437)
Q Consensus 296 ----~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~l~~~~~dg~i~iwd 369 (437)
......|.+-..+| ++++|+.+|.|++||- .+.+ ....+.+-..+|..+. ++|.+|++. -+.++.+-+
T Consensus 425 kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~---AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~ 498 (644)
T KOG2395|consen 425 KQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRR---AKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLID 498 (644)
T ss_pred cccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhh---hhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEE
Confidence 23456677776666 8999999999999996 3222 2334566677776665 456665543 345666665
Q ss_pred C
Q 013717 370 R 370 (437)
Q Consensus 370 ~ 370 (437)
+
T Consensus 499 t 499 (644)
T KOG2395|consen 499 T 499 (644)
T ss_pred E
Confidence 4
No 374
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.97 E-value=0.3 Score=45.11 Aligned_cols=245 Identities=15% Similarity=0.191 Sum_probs=119.5
Q ss_pred eeEEecCCCcceeeeecCccCCeEEEEee-CCEEEEEecC-eEEEEeCCCCceeeeecccc----CCCCcccEEEEEEeC
Q 013717 79 TINFSSASHLCINSVQLGHKLPIGCIAVH-HNFLYAASSH-EINVYDRTGTTWTSINTFND----NDSSSGSVKSVTFCD 152 (437)
Q Consensus 79 ~i~~~~~~~~~~~~~~~~h~~~V~~l~~~-~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~----~~~h~~~v~~l~~~~ 152 (437)
.|.+++......-...+.+ +.|.++.|. .+.|+....+ .+++||+.... ...+.. ..-....+....+..
T Consensus 62 ~I~iys~sG~ll~~i~w~~-~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSSSGKLLSSIPWDS-GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECCCCCEeEEEEECC-CCEEEEEECCCCeEEEEEcCCEEEEEeCCCce---eechhhhccccCcccccccccccCC
Confidence 4888877665433333344 899999999 6677777777 99999997532 111110 011222333344445
Q ss_pred CeEEEEecCCeEEEEeCCCCc-ccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECC
Q 013717 153 GKIFTAHQDCKIRVWQLTPTK-HHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWD 231 (437)
Q Consensus 153 ~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d 231 (437)
++++.-..++.+.+.+-.... ........+....... .......+..+.......+....+
T Consensus 138 ~GivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~------------------~~~~~~~i~~l~~~~~~~i~~~~g 199 (410)
T PF04841_consen 138 NGIVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFH------------------WWPSWTVIPLLSSDRVVEILLANG 199 (410)
T ss_pred CCEEEECCCCeEEEEeCccccchhhccccCCCcccccc------------------cccccccceEeecCcceEEEEecC
Confidence 665555556665544322211 1111111111000000 000001111112222444444555
Q ss_pred CcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeC-ccccEEEEEEccCC
Q 013717 232 KSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEK-HKSAVNALALSDDG 309 (437)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~ 309 (437)
+.+.+.+-...+. +. ..+++..|++||+++ +|.-..+|.+.+...+... .+..+.- .......+.|+-+.
T Consensus 200 ~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~----~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 200 ETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSE----KLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred CEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccc----eeEEeecCcCCCCcEEEEECCC
Confidence 6666554332211 21 346899999999999 8888888999888654322 2223322 23455666666443
Q ss_pred CEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCC
Q 013717 310 TVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGS 372 (437)
Q Consensus 310 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~ 372 (437)
..++.- ...|.++.. .+.-..+.+++..++..-.|| +||+.-..
T Consensus 272 av~l~~--~~~l~lvg~----------------~~~~~~~~~~~~~~l~~E~DG-~riit~~~ 315 (410)
T PF04841_consen 272 AVVLSW--EDELLLVGP----------------DGDSISFWYDGPVILVSEIDG-VRIITSTS 315 (410)
T ss_pred cEEEEe--CCEEEEECC----------------CCCceEEeccCceEEeccCCc-eEEEeCCc
Confidence 222211 223333332 112233344444555566676 88876554
No 375
>PHA03098 kelch-like protein; Provisional
Probab=96.94 E-value=0.22 Score=48.19 Aligned_cols=163 Identities=9% Similarity=0.082 Sum_probs=76.0
Q ss_pred EEEeCCCeEEEEECC-----CcEEEEECCCcceEEEee-cccccEEEEEEecCCe-EEEEeCC------CeEEEecCCCC
Q 013717 217 GLAVNNGLIYSVSWD-----KSLKIWRASDLRCLESIK-AHEDAVNAVAVSAGGT-VYTGSAD------RKIRVWAKPFN 283 (437)
Q Consensus 217 ~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-l~~~~~d------g~v~iwd~~~~ 283 (437)
.+.+....++.||.+ ..+..||..+.+-...-. .....-.+++. -+++ ++.|+.+ ..+..||..++
T Consensus 338 ~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 338 VTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred EEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence 334445666777755 347778877654322111 01111112222 3566 6666632 45788887543
Q ss_pred cccceeeEEeeCccccEEEEEEccCCCEEEEEeCC--------CcEEEEECCCCccceEEeeeecccccceEEEEeeCCE
Q 013717 284 EKRHALIATLEKHKSAVNALALSDDGTVLFSGACD--------RSILVWDREDSANHMVVTGALRGHGKAILCLINVAGL 355 (437)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 355 (437)
.+..+..+....... +++ ..+++.++.|+.+ ..+.+||..+.+-. ..............+..++.+
T Consensus 417 --~W~~~~~~p~~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~--~~~~~~~~r~~~~~~~~~~~i 490 (534)
T PHA03098 417 --KWSKGSPLPISHYGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWT--ELSSLNFPRINASLCIFNNKI 490 (534)
T ss_pred --eeeecCCCCccccCc-eEE-EECCEEEEECCccCCCCCcccceEEEecCCCCcee--eCCCCCcccccceEEEECCEE
Confidence 233222221111111 222 2356666666543 23888998765322 221111111112223345556
Q ss_pred EEEEeCC-----CcEEEeeCCCCCCeeeeeeecCCCC
Q 013717 356 LMSGSAD-----RTVRIWQRGSDGRFGCLAVLEGHTK 387 (437)
Q Consensus 356 l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~h~~ 387 (437)
++.|+.+ +.+.+||..+.. |..+..+....+
T Consensus 491 yv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~~~ 526 (534)
T PHA03098 491 YVVGGDKYEYYINEIEVYDDKTNT-WTLFCKFPKVIG 526 (534)
T ss_pred EEEcCCcCCcccceeEEEeCCCCE-EEecCCCccccc
Confidence 6667654 468888888644 444444333333
No 376
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.88 E-value=0.38 Score=44.76 Aligned_cols=197 Identities=13% Similarity=0.121 Sum_probs=106.0
Q ss_pred EEEEeCC--CeEEEE-ECCCc----EEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCC-----------eEE
Q 013717 216 TGLAVNN--GLIYSV-SWDKS----LKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADR-----------KIR 276 (437)
Q Consensus 216 ~~~~~~~--~~l~~~-~~dg~----i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg-----------~v~ 276 (437)
..+.++| ++++.+ +..|. |+++|+++++.+...-.. .....+.|.+++. |+....+. .|.
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-PKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-EESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-cccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 3566776 555544 44444 999999999776543111 1223399999987 55554332 377
Q ss_pred EecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC---C-CcEEEEECCCC---ccceEEeeeecccccceEEE
Q 013717 277 VWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC---D-RSILVWDREDS---ANHMVVTGALRGHGKAILCL 349 (437)
Q Consensus 277 iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d-g~i~i~d~~~~---~~~~~~~~~~~~~~~~i~~~ 349 (437)
.|++.+....-.++............+..++|+++|+.... + ..+++.|+... ........ ....+....+
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~--~~~~~~~~~v 283 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLS--PREDGVEYYV 283 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEE--ESSSS-EEEE
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEe--CCCCceEEEE
Confidence 77776554433343333222223678899999998775433 2 45788888764 22222221 1222333445
Q ss_pred EeeCCEEEEEeC----CCcEEEeeCCCCCCeeeeeeecCCCC--CeeEEEEEccCCCCceEEEEEecCCC--cEEEEeec
Q 013717 350 INVAGLLMSGSA----DRTVRIWQRGSDGRFGCLAVLEGHTK--PVKSLTAVTEEGQNGVVSVFSGSLDG--EIRAWQVS 421 (437)
Q Consensus 350 ~~~~~~l~~~~~----dg~i~iwd~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~l~s~~~dg--~i~iw~~~ 421 (437)
...++.++.-+. .+.|.-.++...........+..|.. .+..+....+ .+++..-.++ .|+++++.
T Consensus 284 ~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~------~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 284 DHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKD------YLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETT------EEEEEEEETTEEEEEEEETT
T ss_pred EccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECC------EEEEEEEECCccEEEEEECC
Confidence 455663333222 35666677776552122235555655 4555555433 3777777776 47778877
No 377
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.83 E-value=0.16 Score=49.02 Aligned_cols=186 Identities=18% Similarity=0.214 Sum_probs=94.3
Q ss_pred cEEEEEeCC--CeEEEEE------CCC--cEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCC-CeEEEecCC
Q 013717 214 AVTGLAVNN--GLIYSVS------WDK--SLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSAD-RKIRVWAKP 281 (437)
Q Consensus 214 ~v~~~~~~~--~~l~~~~------~dg--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d-g~v~iwd~~ 281 (437)
.+...++++ +.++... .|. .|.+++. .+.. ..+.. ....+.-.|+|+|. +++.... ..+++.+-.
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEeccC
Confidence 456667776 4444443 243 4555554 2222 33322 22478889999977 6666533 222222211
Q ss_pred CCcccceee-EEee------CccccEEEEEEccCCCEEEEEeCCCcEEE---EECCCCccceEEeeeec-ccccceEEEE
Q 013717 282 FNEKRHALI-ATLE------KHKSAVNALALSDDGTVLFSGACDRSILV---WDREDSANHMVVTGALR-GHGKAILCLI 350 (437)
Q Consensus 282 ~~~~~~~~~-~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~i~i---~d~~~~~~~~~~~~~~~-~~~~~i~~~~ 350 (437)
... ++. .... .....|..+.|+|||..++... +|.|++ -....+.....-...+. +-...+..+.
T Consensus 428 ~~g---ql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~ 503 (591)
T PRK13616 428 ATG---QLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD 503 (591)
T ss_pred CCc---eEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence 100 110 0000 2245799999999999888765 577877 44334431111111111 2223346677
Q ss_pred eeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecC--CCCCeeEEEEEccCCCCceEEEEEecCCCcE
Q 013717 351 NVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEG--HTKPVKSLTAVTEEGQNGVVSVFSGSLDGEI 415 (437)
Q Consensus 351 ~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i 415 (437)
|.++ .|+++..++...+|.+.-...... .+.+ ...++..|+-.+. -++....+|.+
T Consensus 504 W~~~~~L~V~~~~~~~~v~~v~vDG~~~~--~~~~~n~~~~v~~vaa~~~-------~iyv~~~~g~~ 562 (591)
T PRK13616 504 WRTGDSLVVGRSDPEHPVWYVNLDGSNSD--ALPSRNLSAPVVAVAASPS-------TVYVTDARAVL 562 (591)
T ss_pred EecCCEEEEEecCCCCceEEEecCCcccc--ccCCCCccCceEEEecCCc-------eEEEEcCCceE
Confidence 7755 455666655555565443331111 1122 3567888887763 25555666633
No 378
>PHA03098 kelch-like protein; Provisional
Probab=96.78 E-value=0.21 Score=48.28 Aligned_cols=191 Identities=10% Similarity=0.071 Sum_probs=90.2
Q ss_pred EEEeCCCeEEEEECCC------cEEEEECCCcceEEEe--ecccccEEEEEEecCCe-EEEEeCC-----CeEEEecCCC
Q 013717 217 GLAVNNGLIYSVSWDK------SLKIWRASDLRCLESI--KAHEDAVNAVAVSAGGT-VYTGSAD-----RKIRVWAKPF 282 (437)
Q Consensus 217 ~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~-l~~~~~d-----g~v~iwd~~~ 282 (437)
++......++.|+.++ .+..||..+.+....- ....... +++. -++. ++.|+.+ ..+..||..+
T Consensus 290 ~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~-~~~~lyv~GG~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 290 SVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTV-FNNRIYVIGGIYNSISLNTVESWKPGE 367 (534)
T ss_pred EEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEE-ECCEEEEEeCCCCCEecceEEEEcCCC
Confidence 3344446666666542 5778888776542211 1111112 2222 2566 6777765 3466787754
Q ss_pred CcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC------CcEEEEECCCCccceEEeeeecccccceEEEEeeCCEE
Q 013717 283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD------RSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLL 356 (437)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l 356 (437)
+ .+.....+....... +++. -+++..+.|+.+ ..+..||..+.+- ..............+....+.++
T Consensus 368 ~--~W~~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W--~~~~~~p~~r~~~~~~~~~~~iy 441 (534)
T PHA03098 368 S--KWREEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKW--SKGSPLPISHYGGCAIYHDGKIY 441 (534)
T ss_pred C--ceeeCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCee--eecCCCCccccCceEEEECCEEE
Confidence 3 233322222111111 1222 256666777632 4588899876432 22211111111122333445566
Q ss_pred EEEeCCC--------cEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCC-----CcEEEEeeccC
Q 013717 357 MSGSADR--------TVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLD-----GEIRAWQVSVS 423 (437)
Q Consensus 357 ~~~~~dg--------~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d-----g~i~iw~~~~~ 423 (437)
+.|+.++ .+.+||..+.+ |..+..+....... +++.. ++ ++++.||.+ ..|.+||.++.
T Consensus 442 v~GG~~~~~~~~~~~~v~~yd~~~~~-W~~~~~~~~~r~~~-~~~~~-~~-----~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 442 VIGGISYIDNIKVYNIVESYNPVTNK-WTELSSLNFPRINA-SLCIF-NN-----KIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred EECCccCCCCCcccceEEEecCCCCc-eeeCCCCCcccccc-eEEEE-CC-----EEEEEcCCcCCcccceeEEEeCCCC
Confidence 6665432 38888988654 43333322111111 12222 22 366677654 46788887754
No 379
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.66 E-value=0.082 Score=48.75 Aligned_cols=173 Identities=14% Similarity=0.086 Sum_probs=91.2
Q ss_pred EEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEe--CC--CeEEEecCCCCcccceeeEEeeCccccEEEEEEccC
Q 013717 234 LKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGS--AD--RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDD 308 (437)
Q Consensus 234 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~--~d--g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 308 (437)
+.+-|.. +.....+......+..-+|+|++. ++... .. ..+.++|+..+.. ..+..+.++ -..-+|+||
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~--~~i~~~~g~---~~~P~fspD 248 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR--PVILNFNGN---NGAPAFSPD 248 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcc--ceeeccCCc---cCCccCCCC
Confidence 4444433 444455544555677778999987 43332 12 3588888865542 223333333 344689999
Q ss_pred CCEEEEE-eCCCc--EEEEECCCCccceEEeeeecccccceEEEEeeCCEEE-EEeCCCc--EEEeeCCCCCCeeeeeee
Q 013717 309 GTVLFSG-ACDRS--ILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLM-SGSADRT--VRIWQRGSDGRFGCLAVL 382 (437)
Q Consensus 309 ~~~l~~~-~~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~ 382 (437)
|+.|+.. ..||. |+++|+...... . .....+... -.++.++|..|+ +.+..|. |.+++.+.... ...+.
T Consensus 249 G~~l~f~~~rdg~~~iy~~dl~~~~~~-~-Lt~~~gi~~-~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~--~riT~ 323 (425)
T COG0823 249 GSKLAFSSSRDGSPDIYLMDLDGKNLP-R-LTNGFGINT-SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV--TRLTF 323 (425)
T ss_pred CCEEEEEECCCCCccEEEEcCCCCcce-e-cccCCcccc-CccCCCCCCEEEEEeCCCCCcceEEECCCCCce--eEeec
Confidence 9877654 44654 566677665421 1 222222222 355666777444 4555665 55556555442 22222
Q ss_pred cCCCCCeeEEEEEccCCCCceEEEEEecCCCc--EEEEeeccC
Q 013717 383 EGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGE--IRAWQVSVS 423 (437)
Q Consensus 383 ~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~--i~iw~~~~~ 423 (437)
.+-... .-.|+|++.. +++....+|. |.+.++.++
T Consensus 324 ~~~~~~--~p~~SpdG~~----i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 324 SGGGNS--NPVWSPDGDK----IVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred cCCCCc--CccCCCCCCE----EEEEeccCCceeeEEeccCCC
Confidence 222222 5568898863 4555544555 555555443
No 380
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.079 Score=52.59 Aligned_cols=107 Identities=16% Similarity=0.237 Sum_probs=73.6
Q ss_pred cEEEEEeCCCeEEEEECCCcEEEEECCCc-ceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeE
Q 013717 214 AVTGLAVNNGLIYSVSWDKSLKIWRASDL-RCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIA 291 (437)
Q Consensus 214 ~v~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~ 291 (437)
.+.+.+.-...++.|+..|.+-..|+... .....-....++|++++|+.+|+ ++.|-.+|.|.+||+..+. .++
T Consensus 91 ~v~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k----~l~ 166 (1206)
T KOG2079|consen 91 GVISSAIVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAK----ILK 166 (1206)
T ss_pred ceeeeeeeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCc----cee
Confidence 44444544477899999999999887653 11122223467899999999999 8889999999999987543 455
Q ss_pred EeeCccccEE---EEEEccCCCEEEEEeCCCcEEEEEC
Q 013717 292 TLEKHKSAVN---ALALSDDGTVLFSGACDRSILVWDR 326 (437)
Q Consensus 292 ~~~~~~~~i~---~~~~~~~~~~l~~~~~dg~i~i~d~ 326 (437)
.+..+..+.+ .+.+..++..++++...|. +|.+
T Consensus 167 ~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 167 VITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred eeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 5555544433 3444445667888888886 4554
No 381
>PRK13684 Ycf48-like protein; Provisional
Probab=96.60 E-value=0.5 Score=42.36 Aligned_cols=158 Identities=12% Similarity=0.040 Sum_probs=88.7
Q ss_pred cccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCcc
Q 013717 252 EDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSAN 331 (437)
Q Consensus 252 ~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 331 (437)
...+.++.+.|++.++..+..|.+..- .+.....+..+ .......++++.+.++++.++++ ..|.+++=....+..
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~tW~~~--~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s 247 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQTAWTPH--QRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES 247 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEE-cCCCCCeEEEe--eCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence 557889999999886666666765432 11122233332 22345678999999999877765 567654322333322
Q ss_pred ceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEec
Q 013717 332 HMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGS 410 (437)
Q Consensus 332 ~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~ 410 (437)
-.............+..+.+.++ .++.++.+|.+. .....++.+..+.....-....+.+.|..++ ..+..+
T Consensus 248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~------~~~~~G 320 (334)
T PRK13684 248 WSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPE------KGFVLG 320 (334)
T ss_pred cccccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCC------ceEEEC
Confidence 11111110111233555665543 455666777554 4555555554443222223467888887665 356677
Q ss_pred CCCcEEEEee
Q 013717 411 LDGEIRAWQV 420 (437)
Q Consensus 411 ~dg~i~iw~~ 420 (437)
..|.|.-|+=
T Consensus 321 ~~G~il~~~~ 330 (334)
T PRK13684 321 QRGVLLRYVG 330 (334)
T ss_pred CCceEEEecC
Confidence 8899887764
No 382
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.53 E-value=0.012 Score=34.80 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=28.8
Q ss_pred ccccEEEEEEccCCCEEEEEeCCCcEEEEECC
Q 013717 296 HKSAVNALALSDDGTVLFSGACDRSILVWDRE 327 (437)
Q Consensus 296 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (437)
....|..++|+|...+||.++.+|.|.+|.+.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 34569999999999999999999999999983
No 383
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.08 Score=47.44 Aligned_cols=140 Identities=11% Similarity=0.051 Sum_probs=89.1
Q ss_pred EEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEE
Q 013717 256 NAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVV 335 (437)
Q Consensus 256 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (437)
+.+-|...++.+.+...|.+.=|-+.... ...++..-....++|.++.|++|.+.|++--.|..|.+++....+.....
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpn-dDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPN-DDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCC-CCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHH
Confidence 34444444443334444445545433211 11122222234569999999999999999999999999998554444444
Q ss_pred eeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCC
Q 013717 336 TGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEG 399 (437)
Q Consensus 336 ~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 399 (437)
....+.....|..+.|... -+|..+..| +-+|.....+ ..++..+.|.-.|+--.|+++..
T Consensus 105 ~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~ 166 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETA 166 (657)
T ss_pred HHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccc
Confidence 4444445566888888866 555555555 7888776644 34556667888888888888875
No 384
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.46 E-value=0.062 Score=49.02 Aligned_cols=144 Identities=11% Similarity=0.141 Sum_probs=90.9
Q ss_pred CEEEEEe-cC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe---------EEEEecCCeEEEEeCCCCccccc
Q 013717 109 NFLYAAS-SH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK---------IFTAHQDCKIRVWQLTPTKHHKL 177 (437)
Q Consensus 109 ~~l~s~~-~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---------l~s~~~dg~i~iwd~~~~~~~~~ 177 (437)
++|+..+ .. .++-.|++.| +.+..+. -|.. |+-+.+.|+. -+.|-.|..|.-||.+-...- .
T Consensus 346 nlil~~~~~~~~l~klDIE~G--KIVeEWk---~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-k 418 (644)
T KOG2395|consen 346 NLILMDGGEQDKLYKLDIERG--KIVEEWK---FEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-K 418 (644)
T ss_pred ceEeeCCCCcCcceeeecccc--eeeeEee---ccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-e
Confidence 4444433 33 7777788875 4455542 2333 6666666542 345566788888998732210 0
Q ss_pred ccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEeecccccEE
Q 013717 178 KTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVN 256 (437)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~ 256 (437)
+.... .+. ........|++-.. .++++|+.+|.|++||-...+....+.+...+|.
T Consensus 419 l~~~q----------------------~kq-y~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~ 475 (644)
T KOG2395|consen 419 LAVVQ----------------------SKQ-YSTKNNFSCFATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIK 475 (644)
T ss_pred eeeee----------------------ccc-cccccccceeeecCCceEEEeecCCcEEeehhhhhhhhhcccccCCcee
Confidence 00000 000 01233445666555 9999999999999999733344445668889999
Q ss_pred EEEEecCCeEEEEeCCCeEEEecCCC
Q 013717 257 AVAVSAGGTVYTGSADRKIRVWAKPF 282 (437)
Q Consensus 257 ~~~~~~~~~l~~~~~dg~v~iwd~~~ 282 (437)
.+..+.+|+.+.|+.+..+.+.++..
T Consensus 476 hVdvtadGKwil~Tc~tyLlLi~t~~ 501 (644)
T KOG2395|consen 476 HVDVTADGKWILATCKTYLLLIDTLI 501 (644)
T ss_pred eEEeeccCcEEEEecccEEEEEEEec
Confidence 99999999988888888998887653
No 385
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.71 Score=42.32 Aligned_cols=196 Identities=16% Similarity=0.175 Sum_probs=117.1
Q ss_pred EEEEeCC---CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeC---CCeEEEecCCCCcccce
Q 013717 216 TGLAVNN---GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSA---DRKIRVWAKPFNEKRHA 288 (437)
Q Consensus 216 ~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~---dg~v~iwd~~~~~~~~~ 288 (437)
..+++++ +.++....++.|.+.|..+.+......... ....+++++++. +.++.. ++.+.+.|-.++.
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~---- 151 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK---- 151 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe----
Confidence 3555655 355555567899999988877777765322 567899999997 544443 6888888765443
Q ss_pred eeEEeeCccccEEEEEEccCCCEEEEEe-CCCcEEEEECCCCccce-EEe-eeecccccceEEEEeeCCEEEEEeC-C--
Q 013717 289 LIATLEKHKSAVNALALSDDGTVLFSGA-CDRSILVWDREDSANHM-VVT-GALRGHGKAILCLINVAGLLMSGSA-D-- 362 (437)
Q Consensus 289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~-~~~-~~~~~~~~~i~~~~~~~~~l~~~~~-d-- 362 (437)
..........+ ..++++|+|+.++... .++.|.++|........ ... ....+.......+..++..+.+... +
T Consensus 152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence 44443322334 8999999999666665 78999999976543221 000 0111122234556666774443333 2
Q ss_pred CcEEEeeCCCCCCeeeeee-ecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 363 RTVRIWQRGSDGRFGCLAV-LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 363 g~i~iwd~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
+.+...|..++. .... .......-..+...|++.. ..+.-+..+.+.+-|..+..
T Consensus 231 ~~v~~id~~~~~---v~~~~~~~~~~~~~~v~~~p~g~~----~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 231 NNVLKIDTATGN---VTATDLPVGSGAPRGVAVDPAGKA----AYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred ceEEEEeCCCce---EEEeccccccCCCCceeECCCCCE----EEEEecCCCeEEEEeCCCCc
Confidence 588888888765 2222 1111114566788888853 33332445677777766543
No 386
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.41 E-value=0.24 Score=46.12 Aligned_cols=115 Identities=15% Similarity=0.197 Sum_probs=69.6
Q ss_pred cCCCcEEEEEeCC------CeEEEEECCCcEEEEECC-----CcceEEEeec-ccc----cEEEEEEecCCe-EEEEeCC
Q 013717 210 EHGDAVTGLAVNN------GLIYSVSWDKSLKIWRAS-----DLRCLESIKA-HED----AVNAVAVSAGGT-VYTGSAD 272 (437)
Q Consensus 210 ~~~~~v~~~~~~~------~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~-~~~----~v~~~~~~~~~~-l~~~~~d 272 (437)
+.-..|..+.|.| ..+++.-....|.+|.+. +.+.+..... ... --..+.|+|... |++-...
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~ 133 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTAR 133 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecC
Confidence 3445688999987 356777788899999875 2222222111 111 123467899888 5444444
Q ss_pred CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeC-CCcEEEEECC
Q 013717 273 RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGAC-DRSILVWDRE 327 (437)
Q Consensus 273 g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~ 327 (437)
..=.+++++.+... ....+ ...+-|.|.+|.+||++|+++-. .=.-+|||-.
T Consensus 134 dvSV~~sV~~d~sr--VkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 134 DVSVLPSVHCDSSR--VKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred ceeEeeeeeeCCce--EEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 44455665544321 22223 45688999999999998876643 3345788854
No 387
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.41 E-value=0.00066 Score=64.97 Aligned_cols=230 Identities=17% Similarity=0.221 Sum_probs=117.8
Q ss_pred CeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCC--CcccccccccCccccceeee
Q 013717 117 HEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTP--TKHHKLKTTLPTVNDRLLRF 191 (437)
Q Consensus 117 d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~ 191 (437)
+-|++-+....- + ...+ .++..+.|-.|.|.... +. -.-|.+.+|+++- |+....+..
T Consensus 111 ~~vrvaN~~~sm-~-~~~l--~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v----------- 173 (1283)
T KOG1916|consen 111 NGVRVANQEPSM-R-HNEL--AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEV----------- 173 (1283)
T ss_pred hhhhhccCcchh-H-HHHH--HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEE-----------
Confidence 356666665521 1 1111 14567888888886322 22 3346788998864 221111100
Q ss_pred cCCCCeeEEeeccceeeecCCCcEEEEEeCC-----CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCeE
Q 013717 192 MLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-----GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTV 266 (437)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l 266 (437)
+........+.-+.|.| -++..+-.++.|++.+..+-.. ..+..|...+..+++...|.+
T Consensus 174 --------------~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~ 238 (1283)
T KOG1916|consen 174 --------------TPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVL 238 (1283)
T ss_pred --------------eecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchh
Confidence 00011223334444544 5666667788888877654332 334457777777776554431
Q ss_pred EEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECC-CCccceEEeeeecccc-c
Q 013717 267 YTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE-DSANHMVVTGALRGHG-K 344 (437)
Q Consensus 267 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~-~ 344 (437)
...+ .+|||+.|+.++.||.++.|.+. .++....+.+.++.|. .
T Consensus 239 ~l~~----------------------------------lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~ 284 (1283)
T KOG1916|consen 239 KLAS----------------------------------LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKH 284 (1283)
T ss_pred hhee----------------------------------eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCC
Confidence 1111 67888888888888888777653 2222333444455555 3
Q ss_pred ceEEEEeeCC-----------EEEEEeC-CCcEEEeeCCCCCCeeee--------eeecCCCCCeeEEEEEccCCCCceE
Q 013717 345 AILCLINVAG-----------LLMSGSA-DRTVRIWQRGSDGRFGCL--------AVLEGHTKPVKSLTAVTEEGQNGVV 404 (437)
Q Consensus 345 ~i~~~~~~~~-----------~l~~~~~-dg~i~iwd~~~~~~~~~~--------~~~~~h~~~v~~l~~~~~~~~~~~~ 404 (437)
+-.|+.++.+ ++++++. ...+++|.... +.|+ .....|.+.|+.+..+.-.- .
T Consensus 285 p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~---w~Cll~~~~d~v~iV~p~~~~v~~~~~~~~~~----~ 357 (1283)
T KOG1916|consen 285 PRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP---WQCLLDKLIDGVQIVGPHDGEVTDLSMCQWMT----T 357 (1283)
T ss_pred CceeeeeccccccCCccceeEEEEecccCCcceeEeeccc---hhhhhhhcccceEeecCCCccccchhhhHHHH----H
Confidence 3344434322 4455544 45689997654 2344 11223433443322221110 1
Q ss_pred EEEEecCCCcEEEEe
Q 013717 405 SVFSGSLDGEIRAWQ 419 (437)
Q Consensus 405 ~l~s~~~dg~i~iw~ 419 (437)
.+++-+.||.|.+|.
T Consensus 358 ~~v~r~v~~~i~~~q 372 (1283)
T KOG1916|consen 358 RLVSRSVDGTIKIWQ 372 (1283)
T ss_pred HHHHhhhHHHHHHhh
Confidence 245567788888885
No 388
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.33 E-value=1.3 Score=44.24 Aligned_cols=213 Identities=11% Similarity=0.055 Sum_probs=115.1
Q ss_pred CCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcE-----EEEEeCCCeEE
Q 013717 152 DGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAV-----TGLAVNNGLIY 226 (437)
Q Consensus 152 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~l~ 226 (437)
++.++.++.++.|.-.|..+++.+............... ...+....+....... ..-....+.++
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~---------~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~ 264 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQH---------QTCRGVSYYDAPAAAAGPAAPAAPADCARRII 264 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccc---------ccccceEEecCCcccccccccccccccCCEEE
Confidence 667888888899999999988866554422111000000 0000000110000000 00112336888
Q ss_pred EEECCCcEEEEECCCcceEEEeecccccE----------------EEEEEecCCeEEEEeC----------CCeEEEecC
Q 013717 227 SVSWDKSLKIWRASDLRCLESIKAHEDAV----------------NAVAVSAGGTVYTGSA----------DRKIRVWAK 280 (437)
Q Consensus 227 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~v----------------~~~~~~~~~~l~~~~~----------dg~v~iwd~ 280 (437)
.++.|+.|.-.|.++|+.+..+.. .+.| ++--.--++.+++|+. +|.|+-+|.
T Consensus 265 ~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da 343 (764)
T TIGR03074 265 LPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDV 343 (764)
T ss_pred EecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEEC
Confidence 899999999999999998876631 1111 1111112556666643 688999999
Q ss_pred CCCcccceeeEE-------------ee-CccccEEEEEEccCCCEEEEEe------------------CCCcEEEEECCC
Q 013717 281 PFNEKRHALIAT-------------LE-KHKSAVNALALSDDGTVLFSGA------------------CDRSILVWDRED 328 (437)
Q Consensus 281 ~~~~~~~~~~~~-------------~~-~~~~~i~~~~~~~~~~~l~~~~------------------~dg~i~i~d~~~ 328 (437)
++++..++.-.. +. +..+.-..++++++..+++.+. ..+.|.-.|.++
T Consensus 344 ~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~T 423 (764)
T TIGR03074 344 NTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATT 423 (764)
T ss_pred CCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCC
Confidence 877654432210 00 0001112345555544444322 135677778888
Q ss_pred CccceEEeeeec------ccccce-EEEEe-eCC---EEEEEeCCCcEEEeeCCCCC
Q 013717 329 SANHMVVTGALR------GHGKAI-LCLIN-VAG---LLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 329 ~~~~~~~~~~~~------~~~~~i-~~~~~-~~~---~l~~~~~dg~i~iwd~~~~~ 374 (437)
++....+..... .....+ ..+.. ++. .++.++.+|.++++|.++++
T Consensus 424 Gk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 480 (764)
T TIGR03074 424 GKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGE 480 (764)
T ss_pred CceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCC
Confidence 877665543210 001122 23333 443 89999999999999999988
No 389
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.30 E-value=0.21 Score=42.03 Aligned_cols=98 Identities=12% Similarity=0.154 Sum_probs=67.3
Q ss_pred EEEEeCC---CeEEEEECCCc-EEEEECCCcceEEEeeccccc--EEEEEEecCCeEEEEeC------CCeEEEecCCCC
Q 013717 216 TGLAVNN---GLIYSVSWDKS-LKIWRASDLRCLESIKAHEDA--VNAVAVSAGGTVYTGSA------DRKIRVWAKPFN 283 (437)
Q Consensus 216 ~~~~~~~---~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~l~~~~~------dg~v~iwd~~~~ 283 (437)
..++++| .-++.+-.-|+ ..++|....+....+...++. --.-.|+|||.++.++. -|.|-|||.+.
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~- 149 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDARE- 149 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccc-
Confidence 3566766 45555555555 567898888777666533221 11235899999555554 37899999763
Q ss_pred cccceeeEEeeCccccEEEEEEccCCCEEEEEe
Q 013717 284 EKRHALIATLEKHKSAVNALALSDDGTVLFSGA 316 (437)
Q Consensus 284 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (437)
....+.++..|.-....+.+.+||+.++.+.
T Consensus 150 --~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 150 --GFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred --ccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 3356677778888889999999999998864
No 390
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.26 E-value=0.87 Score=41.32 Aligned_cols=274 Identities=12% Similarity=0.100 Sum_probs=125.7
Q ss_pred eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcccccccccCc-------------
Q 013717 118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKHHKLKTTLPT------------- 183 (437)
Q Consensus 118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------------- 183 (437)
.+.|||+++++...+.. ....+....|+|++ .++--.++.|.+++..+++..+....-..
T Consensus 24 ~y~i~d~~~~~~~~l~~------~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeE 97 (353)
T PF00930_consen 24 DYYIYDIETGEITPLTP------PPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEE 97 (353)
T ss_dssp EEEEEETTTTEEEESS-------EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHH
T ss_pred eEEEEecCCCceEECcC------CccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccc
Confidence 78889999965444433 25778899999877 44444578999999877743332221100
Q ss_pred --cccceeeec-CCCCeeEEeeccc---eee-----ecCCC---cEEEEEeCCCeEEEEECCC--cEEEEECCCcceEE-
Q 013717 184 --VNDRLLRFM-LPNSYVTVRRHKK---KLW-----IEHGD---AVTGLAVNNGLIYSVSWDK--SLKIWRASDLRCLE- 246 (437)
Q Consensus 184 --~~~~~~~~~-~~~~~~~~~~~~~---~~~-----~~~~~---~v~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~- 246 (437)
......... ..+..++...... ..+ ..... .+..+.+-. .|..+- .+.++|+.+++...
T Consensus 98 Ev~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk----~G~~np~v~l~v~~~~~~~~~~~ 173 (353)
T PF00930_consen 98 EVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPK----AGDPNPRVSLFVVDLASGKTTEL 173 (353)
T ss_dssp HTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--B----TTS---EEEEEEEESSSTCCCEE
T ss_pred cccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCC----CCCcCCceEEEEEECCCCcEEEe
Confidence 001111222 2233333222111 111 01111 223333211 111222 36678888776532
Q ss_pred Ee----ecccccEEEEEEecCCe-EEEEeCC-----CeEEEecCCCCcccceeeEEeeCccccEEEEEEc-cCCC-EEEE
Q 013717 247 SI----KAHEDAVNAVAVSAGGT-VYTGSAD-----RKIRVWAKPFNEKRHALIATLEKHKSAVNALALS-DDGT-VLFS 314 (437)
Q Consensus 247 ~~----~~~~~~v~~~~~~~~~~-l~~~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~-~l~~ 314 (437)
.. ......+..+.|.+++. ++..-.+ -.+.++|..++...........+--..-....|. +++. +|..
T Consensus 174 ~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~ 253 (353)
T PF00930_consen 174 DPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWI 253 (353)
T ss_dssp ---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEE
T ss_pred eeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEE
Confidence 11 13456788999999988 6554432 2355666654332211111111111112244444 5554 5555
Q ss_pred EeCCCcEEEEECCCCccceEEeeeecccccce---EEEEeeCC-EEEEEeCC--CcEEEe--eCCCCCCeeeeeeecCCC
Q 013717 315 GACDRSILVWDREDSANHMVVTGALRGHGKAI---LCLINVAG-LLMSGSAD--RTVRIW--QRGSDGRFGCLAVLEGHT 386 (437)
Q Consensus 315 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i---~~~~~~~~-~l~~~~~d--g~i~iw--d~~~~~~~~~~~~~~~h~ 386 (437)
...||.-+||-+........ .+....-.| ..+...++ +++++..+ +.-.+| ++..+. .+..+....
T Consensus 254 s~~~G~~hly~~~~~~~~~~---~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~---~~~~LT~~~ 327 (353)
T PF00930_consen 254 SERDGYRHLYLYDLDGGKPR---QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG---EPKCLTCED 327 (353)
T ss_dssp EETTSSEEEEEEETTSSEEE---ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT---EEEESSTTS
T ss_pred EEcCCCcEEEEEccccccee---ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC---CeEeccCCC
Confidence 55777655554433222211 222223333 34444444 44455543 344444 455122 344444333
Q ss_pred CCeeEEEEEccCCCCceEEEEEecC
Q 013717 387 KPVKSLTAVTEEGQNGVVSVFSGSL 411 (437)
Q Consensus 387 ~~v~~l~~~~~~~~~~~~~l~s~~~ 411 (437)
..-..+.|+|++.. ++.+++.
T Consensus 328 ~~~~~~~~Spdg~y----~v~~~s~ 348 (353)
T PF00930_consen 328 GDHYSASFSPDGKY----YVDTYSG 348 (353)
T ss_dssp STTEEEEE-TTSSE----EEEEEES
T ss_pred CCceEEEECCCCCE----EEEEEcC
Confidence 33368999999863 6666654
No 391
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.26 E-value=0.76 Score=44.58 Aligned_cols=130 Identities=8% Similarity=0.032 Sum_probs=67.8
Q ss_pred CCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCC---CCcccceeeEEee-CccccEEEEEE
Q 013717 231 DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKP---FNEKRHALIATLE-KHKSAVNALAL 305 (437)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~---~~~~~~~~~~~~~-~~~~~i~~~~~ 305 (437)
.+.+.+.++..++... ...+.|..+.|+|||. ++... +|.|.+--+. .+.........+. .....+..+.|
T Consensus 429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence 3455555665554433 2356799999999998 55544 5777773222 1211111111222 23334688999
Q ss_pred ccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEE
Q 013717 306 SDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVR 366 (437)
Q Consensus 306 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~ 366 (437)
..++.++ ++..++...+|.+.-........ .-......+..++-.+..++....+|.+.
T Consensus 505 ~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~-~~~n~~~~v~~vaa~~~~iyv~~~~g~~~ 563 (591)
T PRK13616 505 RTGDSLV-VGRSDPEHPVWYVNLDGSNSDAL-PSRNLSAPVVAVAASPSTVYVTDARAVLQ 563 (591)
T ss_pred ecCCEEE-EEecCCCCceEEEecCCcccccc-CCCCccCceEEEecCCceEEEEcCCceEE
Confidence 9998855 55555544455443211111110 11112455666766666666666666443
No 392
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.25 E-value=0.28 Score=44.37 Aligned_cols=104 Identities=16% Similarity=0.206 Sum_probs=55.1
Q ss_pred CCCcEEEEECCCcceEEEeeccc--ccEEEEEEec--CCe--EEEEeCCCeEEEecCCCCccccee--eEEeeC------
Q 013717 230 WDKSLKIWRASDLRCLESIKAHE--DAVNAVAVSA--GGT--VYTGSADRKIRVWAKPFNEKRHAL--IATLEK------ 295 (437)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~~~--~~~--l~~~~~dg~v~iwd~~~~~~~~~~--~~~~~~------ 295 (437)
...++.+||+.+.+.++++.-.. .....+.|.. +.. ++.+.....|..|--.. ...+.. +..+..
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~-~g~W~a~kVi~ip~~~v~~~ 298 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDD-DGEWAAEKVIDIPAKKVEGW 298 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-E-TTEEEEEEEEEE--EE--SS
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcC-CCCeeeeEEEECCCcccCcc
Confidence 35789999999999999987332 3455677754 333 55555566666653311 111221 112211
Q ss_pred -----------ccccEEEEEEccCCCEEEEEe-CCCcEEEEECCCCccceE
Q 013717 296 -----------HKSAVNALALSDDGTVLFSGA-CDRSILVWDREDSANHMV 334 (437)
Q Consensus 296 -----------~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~ 334 (437)
-..-|+.|..|.|.++|...+ .+|.|+.||+.+......
T Consensus 299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl 349 (461)
T PF05694_consen 299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKL 349 (461)
T ss_dssp ---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EE
T ss_pred cccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcE
Confidence 124579999999999887765 489999999998765543
No 393
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.24 E-value=0.36 Score=44.62 Aligned_cols=134 Identities=15% Similarity=0.130 Sum_probs=79.2
Q ss_pred CcEEEEECCCcceEEEeecccccEEEEEEecCCe--EEEEeCCCeEEEe--cCCCCcccceeeEEeeCccccEEEEEEcc
Q 013717 232 KSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT--VYTGSADRKIRVW--AKPFNEKRHALIATLEKHKSAVNALALSD 307 (437)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--l~~~~~dg~v~iw--d~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 307 (437)
..+.++|+.+++....+. ..+.-..-+|+|||+ +++...||...|| |+.... ...+....+.-..=.|+|
T Consensus 218 ~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~-----~~~Lt~~~gi~~~Ps~sp 291 (425)
T COG0823 218 PRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN-----LPRLTNGFGINTSPSWSP 291 (425)
T ss_pred ceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc-----ceecccCCccccCccCCC
Confidence 459999999887665554 444455678999998 5666677776665 554332 222333333333667999
Q ss_pred CCCEEEEEeC-CCc--EEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeC-CCc--EEEeeCCCCC
Q 013717 308 DGTVLFSGAC-DRS--ILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSA-DRT--VRIWQRGSDG 374 (437)
Q Consensus 308 ~~~~l~~~~~-dg~--i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~-dg~--i~iwd~~~~~ 374 (437)
||++++-.+. .|. |.+++.+.... ..+. ..+-......+++++++|+..+. +|. |.+.|+.++.
T Consensus 292 dG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT--~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 292 DGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLT--FSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CCCEEEEEeCCCCCcceEEECCCCCce-eEee--ccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 9998876543 444 56666655432 1121 22222335556677776665554 454 6667776655
No 394
>PHA02790 Kelch-like protein; Provisional
Probab=96.24 E-value=0.35 Score=45.85 Aligned_cols=184 Identities=9% Similarity=0.041 Sum_probs=89.0
Q ss_pred CCCeEEEEECCC-----cEEEEECCCcceEE--EeecccccEEEEEEecCCe-EEEEeCC--CeEEEecCCCCcccceee
Q 013717 221 NNGLIYSVSWDK-----SLKIWRASDLRCLE--SIKAHEDAVNAVAVSAGGT-VYTGSAD--RKIRVWAKPFNEKRHALI 290 (437)
Q Consensus 221 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~-l~~~~~d--g~v~iwd~~~~~~~~~~~ 290 (437)
....+++|+.++ .+..||..+.+... .+....... +++ .-++. .+.|+.+ ..+..||...+ .+..+
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v-~~~~~iYviGG~~~~~sve~ydp~~n--~W~~~ 346 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGV-PANNKLYVVGGLPNPTSVERWFHGDA--AWVNM 346 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEE-EECCEEEEECCcCCCCceEEEECCCC--eEEEC
Confidence 335566776543 46678877654322 121111111 222 23677 6777654 35777876433 23333
Q ss_pred EEeeCccccEEEEEEccCCCEEEEEeCCC---cEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEE
Q 013717 291 ATLEKHKSAVNALALSDDGTVLFSGACDR---SILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRI 367 (437)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~i 367 (437)
..+.........+. -+|+..+.|+.++ .+..||.++.+ +...................+.+.+.| |.+.+
T Consensus 347 ~~l~~~r~~~~~~~--~~g~IYviGG~~~~~~~ve~ydp~~~~--W~~~~~m~~~r~~~~~~~~~~~IYv~G---G~~e~ 419 (480)
T PHA02790 347 PSLLKPRCNPAVAS--INNVIYVIGGHSETDTTTEYLLPNHDQ--WQFGPSTYYPHYKSCALVFGRRLFLVG---RNAEF 419 (480)
T ss_pred CCCCCCCcccEEEE--ECCEEEEecCcCCCCccEEEEeCCCCE--EEeCCCCCCccccceEEEECCEEEEEC---CceEE
Confidence 32221111222222 2577777777553 46788887643 222222211111222334445455555 35778
Q ss_pred eeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCC-----CcEEEEeeccC
Q 013717 368 WQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLD-----GEIRAWQVSVS 423 (437)
Q Consensus 368 wd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~d-----g~i~iw~~~~~ 423 (437)
||.++++ |..+..+....... +++... + ++.+.||.+ ..|..||.++.
T Consensus 420 ydp~~~~-W~~~~~m~~~r~~~-~~~v~~-~-----~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 420 YCESSNT-WTLIDDPIYPRDNP-ELIIVD-N-----KLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred ecCCCCc-EeEcCCCCCCcccc-EEEEEC-C-----EEEEECCcCCCcccceEEEEECCCC
Confidence 9987654 55555443222222 233332 2 377777754 34667776654
No 395
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.11 E-value=0.85 Score=39.87 Aligned_cols=272 Identities=11% Similarity=0.109 Sum_probs=115.4
Q ss_pred cceeeccccccccccCCCceeEEecC-CCcceeeeec-Cc--cCCeEEEEeeCCEEEEEecCeEEEEeCCC-Cceeeeec
Q 013717 60 LSLQTLPSVPSLQKLSPDETINFSSA-SHLCINSVQL-GH--KLPIGCIAVHHNFLYAASSHEINVYDRTG-TTWTSINT 134 (437)
Q Consensus 60 ~~~~~~~~~~~~~s~s~dg~i~~~~~-~~~~~~~~~~-~h--~~~V~~l~~~~~~l~s~~~d~v~vwd~~~-~~~~~~~~ 134 (437)
..+.|.......+ ++..+.|..-.- .........- .. .-...++.|.++....++..-+.+...+. ..++.+..
T Consensus 20 ~dV~F~d~~~G~~-VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g~ll~T~DgG~tW~~v~l 98 (302)
T PF14870_consen 20 LDVAFVDPNHGWA-VGAYGTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPGLLLHTTDGGKTWERVPL 98 (302)
T ss_dssp EEEEESSSS-EEE-EETTTEEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETTEEEEESSTTSS-EE---
T ss_pred EEEEEecCCEEEE-EecCCEEEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCceEEEecCCCCCcEEeec
Confidence 4566664444444 344555543322 3333333322 11 23466788884333334444333333333 34555432
Q ss_pred cccCCCCcccEEEEEE-eCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCC
Q 013717 135 FNDNDSSSGSVKSVTF-CDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGD 213 (437)
Q Consensus 135 ~~~~~~h~~~v~~l~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (437)
-. .-.+....+.. .++....++..|.|.. ..+.++....+. ..-..
T Consensus 99 ~~---~lpgs~~~i~~l~~~~~~l~~~~G~iy~-T~DgG~tW~~~~-----------------------------~~~~g 145 (302)
T PF14870_consen 99 SS---KLPGSPFGITALGDGSAELAGDRGAIYR-TTDGGKTWQAVV-----------------------------SETSG 145 (302)
T ss_dssp -T---T-SS-EEEEEEEETTEEEEEETT--EEE-ESSTTSSEEEEE------------------------------S---
T ss_pred CC---CCCCCeeEEEEcCCCcEEEEcCCCcEEE-eCCCCCCeeEcc-----------------------------cCCcc
Confidence 11 11223333443 3555444455555432 223333222211 12345
Q ss_pred cEEEEEeCC-CeEEEEECCCcE-EEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCccccee-e
Q 013717 214 AVTGLAVNN-GLIYSVSWDKSL-KIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHAL-I 290 (437)
Q Consensus 214 ~v~~~~~~~-~~l~~~~~dg~i-~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~ 290 (437)
.+..+...+ ..+++.+..|.+ .-||--...-...-+.....|.+|.|.|++.|......|.|+.=+...+...+.. +
T Consensus 146 s~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~ 225 (302)
T PF14870_consen 146 SINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPI 225 (302)
T ss_dssp -EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B
T ss_pred eeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCcccccccc
Confidence 677777666 344444455554 5677433222222233567899999999998766779999988762222221111 1
Q ss_pred EEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee-CCEEEEEeCCCcEEEe
Q 013717 291 ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV-AGLLMSGSADRTVRIW 368 (437)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~l~~~~~dg~i~iw 368 (437)
.......-.+..++|.+++...++|+ .|.+ +...+.++. .........-......+.|. ++.-++-+.+|.|--|
T Consensus 226 ~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGkt-W~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 226 IPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKT-WQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp -TTSS--S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS--EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred CCcccCceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCcc-ceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence 11112233589999999877776664 5544 445555543 32222222223445566654 4566667788877554
No 396
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.07 E-value=0.035 Score=44.94 Aligned_cols=101 Identities=14% Similarity=0.188 Sum_probs=63.5
Q ss_pred CCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEE
Q 013717 152 DGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSV 228 (437)
Q Consensus 152 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~ 228 (437)
...++.|+.+|.|.+|+........... ..-...|.++.... .+..++
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~-----------------------------~s~~e~i~~~Ip~~~~~~~~c~~ 120 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRV-----------------------------CSGEESIDLGIPNGRDSSLGCVG 120 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhh-----------------------------hcccccceeccccccccceeEEe
Confidence 4459999999999999987322111111 01222333333332 488899
Q ss_pred ECCCcEEEEECCCcceEEEeeccc-ccEEEEEEecCCe-EEEE--eCCCeEEEecCC
Q 013717 229 SWDKSLKIWRASDLRCLESIKAHE-DAVNAVAVSAGGT-VYTG--SADRKIRVWAKP 281 (437)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~-l~~~--~~dg~v~iwd~~ 281 (437)
+.||.|+.|++.-.+.+.....|. .++..+..+..++ ++.+ +.|..++.|++.
T Consensus 121 ~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 121 AQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 999999999998888777666565 4444444444444 5555 667777777664
No 397
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.02 E-value=1.3 Score=42.82 Aligned_cols=199 Identities=11% Similarity=0.034 Sum_probs=99.1
Q ss_pred cCCeEEEEeeCCEEEE-EecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCCCCcc
Q 013717 98 KLPIGCIAVHHNFLYA-ASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLTPTKH 174 (437)
Q Consensus 98 ~~~V~~l~~~~~~l~s-~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~~~~~ 174 (437)
-+...++..+...+.. .+.- .|+||+..+. .+..+. -..+.+..+.|+.+. |+....+|++++|++-....
T Consensus 43 ~gGpIAV~r~p~~~~~~~~a~~~I~If~~sG~---lL~~~~---w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~i 116 (829)
T KOG2280|consen 43 FGGPIAVTRSPSKLVPLYSARPYIRIFNISGQ---LLGRIL---WKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFI 116 (829)
T ss_pred cCCceEEEecccccccccccceeEEEEecccc---chHHHH---hcCCCeeeecccCCceEEEEeccceEEEeecchhhh
Confidence 3444455555322221 1334 7999998874 222221 123388899999776 99999999999999874321
Q ss_pred cccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEeec---c
Q 013717 175 HKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESIKA---H 251 (437)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~ 251 (437)
....... ......|..+.+..+-++.-..+|.+.+-+-.....+..++. .
T Consensus 117 e~~svg~---------------------------e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~~~~~~~~~diP~~ 169 (829)
T KOG2280|consen 117 ESNSVGF---------------------------ESQMSDIVECRFFHNGVAVLTVSGQVILINGVEEPKLRKMPDIPYN 169 (829)
T ss_pred ccccccc---------------------------ccccCceeEEEEecCceEEEecCCcEEEEcCCCcchhhhCCCCCCc
Confidence 1100000 012223444444334444445555555544322222233321 1
Q ss_pred cccEEEEEEecCCeEEEEeCCCe----EEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECC
Q 013717 252 EDAVNAVAVSAGGTVYTGSADRK----IRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327 (437)
Q Consensus 252 ~~~v~~~~~~~~~~l~~~~~dg~----v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (437)
.-.-.|-...+++.-.++..+-. ..++-..... .....+....+.+..+..||+.++|+--...|.|.+-+.+
T Consensus 170 ~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~---~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D 246 (829)
T KOG2280|consen 170 ELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESR---VQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSID 246 (829)
T ss_pred cCCCcceeEecCCCcceeEEeechhhhhcccceeccc---ccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecc
Confidence 11112222223322111110100 1111111111 1112222234678889999999999999999999999887
Q ss_pred CCccc
Q 013717 328 DSANH 332 (437)
Q Consensus 328 ~~~~~ 332 (437)
..+..
T Consensus 247 ~~~~l 251 (829)
T KOG2280|consen 247 LSQIL 251 (829)
T ss_pred hhhhh
Confidence 55433
No 398
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.99 E-value=0.026 Score=33.41 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=28.3
Q ss_pred CCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717 386 TKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 386 ~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
...|..++|+|..+ +|+.+..||.|.+++++.
T Consensus 11 ~~~v~~~~w~P~md-----LiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-----LIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCcEEEEEECCCCC-----EEEEEECCCeEEEEECCC
Confidence 45699999999986 899999999999999943
No 399
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.89 E-value=1.4 Score=40.44 Aligned_cols=78 Identities=14% Similarity=0.150 Sum_probs=50.5
Q ss_pred eeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEE----Eee-------------CC-
Q 013717 293 LEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCL----INV-------------AG- 354 (437)
Q Consensus 293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~----~~~-------------~~- 354 (437)
+......+.++..+|++++.++.+.=|.|.++|+..+..... ++|....-..+ ... ..
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrm----WKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~ 378 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRM----WKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRF 378 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhh----hccCccceEEEEEeecccccccccccccCCCCcc
Confidence 334455688999999999999998889999999987643222 22222211111 110 01
Q ss_pred ---EEEEEeCCCcEEEeeCCCCC
Q 013717 355 ---LLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 355 ---~l~~~~~dg~i~iwd~~~~~ 374 (437)
+++-+-.-|.|-||.++.+.
T Consensus 379 ~l~LvIyaprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 379 ALFLVIYAPRRGILEVWSMRQGP 401 (415)
T ss_pred eEEEEEEeccCCeEEEEecCCCC
Confidence 44556667889999988876
No 400
>PHA02790 Kelch-like protein; Provisional
Probab=95.82 E-value=1.7 Score=41.37 Aligned_cols=181 Identities=11% Similarity=0.068 Sum_probs=89.6
Q ss_pred CCEEEEEecC------eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecC--CeEEEEeCCCCcccccc
Q 013717 108 HNFLYAASSH------EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQD--CKIRVWQLTPTKHHKLK 178 (437)
Q Consensus 108 ~~~l~s~~~d------~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~d--g~i~iwd~~~~~~~~~~ 178 (437)
+..++.|+.+ .+..||..++.|..+..+.... .. .+++..++. .+.||.+ ..+..||..+++.. ..
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r---~~-~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~-~~ 346 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPR---LY-ASGVPANNKLYVVGGLPNPTSVERWFHGDAAWV-NM 346 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchh---hc-ceEEEECCEEEEECCcCCCCceEEEECCCCeEE-EC
Confidence 4555666532 5778999888787777653211 11 233344566 5666653 34667776544321 11
Q ss_pred cccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCC---cEEEEECCCcceEEE--eecccc
Q 013717 179 TTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDK---SLKIWRASDLRCLES--IKAHED 253 (437)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~--~~~~~~ 253 (437)
..++ ............+...+.|+.++ .+..||..+.+-... +.....
T Consensus 347 ~~l~---------------------------~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~ 399 (480)
T PHA02790 347 PSLL---------------------------KPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHY 399 (480)
T ss_pred CCCC---------------------------CCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccc
Confidence 1111 01112233444556666676543 467788766543221 111111
Q ss_pred cEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC-----CcEEEEECC
Q 013717 254 AVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD-----RSILVWDRE 327 (437)
Q Consensus 254 ~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~i~d~~ 327 (437)
.. +++ .-+++ .+.| |.+.+||..++ .+..+..+.........+.+ +|+..+.|+.+ ..+.+||..
T Consensus 400 ~~-~~~-~~~~~IYv~G---G~~e~ydp~~~--~W~~~~~m~~~r~~~~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 400 KS-CAL-VFGRRLFLVG---RNAEFYCESSN--TWTLIDDPIYPRDNPELIIV--DNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred cc-eEE-EECCEEEEEC---CceEEecCCCC--cEeEcCCCCCCccccEEEEE--CCEEEEECCcCCCcccceEEEEECC
Confidence 11 222 33667 4555 45778887543 44444333222222222222 56777777754 346677766
Q ss_pred CC
Q 013717 328 DS 329 (437)
Q Consensus 328 ~~ 329 (437)
+.
T Consensus 471 ~~ 472 (480)
T PHA02790 471 TY 472 (480)
T ss_pred CC
Confidence 53
No 401
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.69 E-value=1.2 Score=38.07 Aligned_cols=162 Identities=14% Similarity=0.126 Sum_probs=104.3
Q ss_pred cCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeec-ccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcc
Q 013717 210 EHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKA-HEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEK 285 (437)
Q Consensus 210 ~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~ 285 (437)
+-...+.++.|+| +.|++......-.++=..+|+.+.++.- .-.....+.+..+|. .++--.++.+.++.+..+..
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~ 162 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTT 162 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCcc
Confidence 3445599999999 7888888777777777788999888761 123345677877787 44445578888887654432
Q ss_pred ccee------eEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeeccc-------ccceEEEEee
Q 013717 286 RHAL------IATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH-------GKAILCLINV 352 (437)
Q Consensus 286 ~~~~------~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-------~~~i~~~~~~ 352 (437)
.... +......+.....++|+|..+.|+.+=+-.-+.||.+........... ...+ -..+.++.++
T Consensus 163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~-~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHA-SLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccccc-ccCcccccceEeeccccceec
Confidence 1111 111122255678999999999999888888888888764332211111 1111 1234555666
Q ss_pred C---CEEEEEeCCCcEEEeeCCC
Q 013717 353 A---GLLMSGSADRTVRIWQRGS 372 (437)
Q Consensus 353 ~---~~l~~~~~dg~i~iwd~~~ 372 (437)
. .+|+-+.+++.+.-.|...
T Consensus 242 ~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 242 AITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred CCCCcEEEEecCCceEEEEecCC
Confidence 3 3777788888888888775
No 402
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.65 E-value=0.99 Score=43.55 Aligned_cols=122 Identities=12% Similarity=0.198 Sum_probs=75.4
Q ss_pred eeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEee----CCEEEEEeCCCc
Q 013717 289 LIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINV----AGLLMSGSADRT 364 (437)
Q Consensus 289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~l~~~~~dg~ 364 (437)
....+...-..+.-+.-+.-++.-++-+....+.|||.+.+. ......+ .....|..++|. ++.+++.+..+.
T Consensus 21 ~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~--lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~ 97 (631)
T PF12234_consen 21 LTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGV--LEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHH 97 (631)
T ss_pred EEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcE--EEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcE
Confidence 334444444455556666656655555556689999998765 2333333 346777777765 447777888888
Q ss_pred EEEeeCC------CCCCeeeeeee--cCCC-CCeeEEEEEccCCCCceEEEEEecCCCcEEEEee
Q 013717 365 VRIWQRG------SDGRFGCLAVL--EGHT-KPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQV 420 (437)
Q Consensus 365 i~iwd~~------~~~~~~~~~~~--~~h~-~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~ 420 (437)
|.+|--. .+..+..+..+ ..|+ .+|.+..|.+++ .|+.|+ ++.+.|++=
T Consensus 98 v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G------~LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 98 VLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG------TLVVGS-GNQLFVFDK 155 (631)
T ss_pred EEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCC------eEEEEe-CCEEEEECC
Confidence 9888531 12223344333 3444 589999999998 455444 347888764
No 403
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.63 E-value=1.2 Score=37.79 Aligned_cols=204 Identities=10% Similarity=0.123 Sum_probs=101.3
Q ss_pred eec-CccCCeEEEEee--CCEEEEEecC--eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEe-cCCeEE
Q 013717 93 VQL-GHKLPIGCIAVH--HNFLYAASSH--EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAH-QDCKIR 165 (437)
Q Consensus 93 ~~~-~h~~~V~~l~~~--~~~l~s~~~d--~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~-~dg~i~ 165 (437)
+.+ +-...+..|+|+ .+.|++..+. .|..++.+.. ......+ .+ .+....|++.++. ++... .++.+.
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~-vlr~i~l---~g-~~D~EgI~y~g~~~~vl~~Er~~~L~ 89 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGK-VLRRIPL---DG-FGDYEGITYLGNGRYVLSEERDQRLY 89 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE----SS--SSEEEEEE-STTEEEEEETTTTEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCC-EEEEEeC---CC-CCCceeEEEECCCEEEEEEcCCCcEE
Confidence 344 666679999999 4555555544 8888887642 3222223 22 4678889988554 44444 589999
Q ss_pred EEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCC--
Q 013717 166 VWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASD-- 241 (437)
Q Consensus 166 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~-- 241 (437)
+.++............. .........+...+-.++|++ +.|+.+-+..-..+|.+..
T Consensus 90 ~~~~~~~~~~~~~~~~~-------------------~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~ 150 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQ-------------------KISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP 150 (248)
T ss_dssp EEEE----TT--EEEEE-------------------EEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT
T ss_pred EEEEeccccccchhhce-------------------EEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc
Confidence 99885432111110000 000000013556789999988 7777777777777777653
Q ss_pred -cceEEEee--------cccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEEeeC-c------cccEEEE
Q 013717 242 -LRCLESIK--------AHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIATLEK-H------KSAVNAL 303 (437)
Q Consensus 242 -~~~~~~~~--------~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~------~~~i~~~ 303 (437)
...+.... .....+.+++++|... ++....+..|..+|..... .....+.. . -.+.-.|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~---~~~~~L~~g~~gl~~~~~QpEGI 227 (248)
T PF06977_consen 151 GGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRV---VSSLSLDRGFHGLSKDIPQPEGI 227 (248)
T ss_dssp -SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--E---EEEEE-STTGGG-SS---SEEEE
T ss_pred CccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCE---EEEEEeCCcccCcccccCCccEE
Confidence 21221111 1334588999998654 6677778889999854221 11122222 1 1357899
Q ss_pred EEccCCCEEEEEeCCCcEEEE
Q 013717 304 ALSDDGTVLFSGACDRSILVW 324 (437)
Q Consensus 304 ~~~~~~~~l~~~~~dg~i~i~ 324 (437)
+|.++|++.++. +-+..++|
T Consensus 228 a~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 228 AFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp EE-TT--EEEEE-TTTEEEEE
T ss_pred EECCCCCEEEEc-CCceEEEe
Confidence 999999665554 55555544
No 404
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.56 E-value=0.73 Score=44.90 Aligned_cols=111 Identities=8% Similarity=0.167 Sum_probs=73.6
Q ss_pred cEEEEEeCC----CeEEEEECCCcEEEEECCCc-----------c---------eEEEeecccccEEEEEEe--cCCe-E
Q 013717 214 AVTGLAVNN----GLIYSVSWDKSLKIWRASDL-----------R---------CLESIKAHEDAVNAVAVS--AGGT-V 266 (437)
Q Consensus 214 ~v~~~~~~~----~~l~~~~~dg~i~iwd~~~~-----------~---------~~~~~~~~~~~v~~~~~~--~~~~-l 266 (437)
.|+-|.... ..|+.+..||.|.+|.+++- + +...+ .....++.++++ ...+ |
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEE
Confidence 456555543 88999999999999976320 0 11112 234578999998 6666 7
Q ss_pred EEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCC---C---EEEEEeCCCcEEEEEC
Q 013717 267 YTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDG---T---VLFSGACDRSILVWDR 326 (437)
Q Consensus 267 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~---~l~~~~~dg~i~i~d~ 326 (437)
|+++....|.||-............ -..+...|.+|.|-++. . .+++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~-s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVP-SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEecccccccccc-ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 7788888898886543221111111 11256678899998743 2 7888999999999888
No 405
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=95.49 E-value=2.2 Score=39.79 Aligned_cols=184 Identities=9% Similarity=0.046 Sum_probs=86.6
Q ss_pred cEEEEECCCcceE--EEeecccc-c-EEEEEEecCCe-EE-EEeCC---CeEEEecCCCCcccceeeEEeeCccccE-EE
Q 013717 233 SLKIWRASDLRCL--ESIKAHED-A-VNAVAVSAGGT-VY-TGSAD---RKIRVWAKPFNEKRHALIATLEKHKSAV-NA 302 (437)
Q Consensus 233 ~i~iwd~~~~~~~--~~~~~~~~-~-v~~~~~~~~~~-l~-~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~i-~~ 302 (437)
.|+.|.+.+.... ..+..... . ...+..+++++ ++ ..... ..+.+.|+............+......+ ..
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~ 282 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY 282 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence 3788887765432 33333222 2 56788899998 33 33332 3577777764310111122222223333 33
Q ss_pred EEEccCCCEEEEEe---CCCcEEEEECCCCccceEEeeeecccc--cceEEEEeeCCEEEE-EeCCC--cEEEeeCCCCC
Q 013717 303 LALSDDGTVLFSGA---CDRSILVWDREDSANHMVVTGALRGHG--KAILCLINVAGLLMS-GSADR--TVRIWQRGSDG 374 (437)
Q Consensus 303 ~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~l~~-~~~dg--~i~iwd~~~~~ 374 (437)
+... .+.+++... .++.|...++......... ..+..+. ..+..+...+++|+. .-.++ .|+++++..+.
T Consensus 283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~-~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWW-TVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEE-EEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred EEcc-CCEEEEeeCCCCCCcEEEEecccccccccce-eEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCc
Confidence 4333 444444332 3567888888876531111 1122233 356777777775444 44444 58889988222
Q ss_pred CeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecC---CCcEEEEeeccCC
Q 013717 375 RFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSL---DGEIRAWQVSVSC 424 (437)
Q Consensus 375 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~---dg~i~iw~~~~~~ 424 (437)
........-.+.|..+...++.+. +.++.+. =+++..||+.+++
T Consensus 361 --~~~~~~~p~~g~v~~~~~~~~~~~----~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 361 --ESREIPLPEAGSVSGVSGDFDSDE----LRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp --EEEEEESSSSSEEEEEES-TT-SE----EEEEEEETTEEEEEEEEETTTTC
T ss_pred --EEeeecCCcceEEeccCCCCCCCE----EEEEEeCCCCCCEEEEEECCCCC
Confidence 122222222344555554454442 4444433 2467777777764
No 406
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.42 E-value=3.3 Score=41.51 Aligned_cols=195 Identities=11% Similarity=0.117 Sum_probs=110.9
Q ss_pred CccCCeEEEEee---CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEE-Ee-CCeEEEEecCCeEEEEeCC
Q 013717 96 GHKLPIGCIAVH---HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVT-FC-DGKIFTAHQDCKIRVWQLT 170 (437)
Q Consensus 96 ~h~~~V~~l~~~---~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~-~~-~~~l~s~~~dg~i~iwd~~ 170 (437)
+.......++.+ ++.|+-...+.||+++-.. ....+. -.+.++... +. ...++.++.++.+...++.
T Consensus 446 gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~~----~~~~W~----~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~ 517 (1096)
T KOG1897|consen 446 GFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSAG----LRSEWR----PPGKITIGVVSANASQVVVAGGGLALFYLEIE 517 (1096)
T ss_pred cccccCceEEEEccCCceEEEEecccEEEEcchh----hhhccc----CCCceEEEEEeecceEEEEecCccEEEEEEee
Confidence 555556666666 7777777777899998763 122221 122233322 22 3347777777878777777
Q ss_pred CCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-----C---eEEEEECCCcEEEEEC-CC
Q 013717 171 PTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-----G---LIYSVSWDKSLKIWRA-SD 241 (437)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~---~l~~~~~dg~i~iwd~-~~ 241 (437)
.+....... ...+..|.|+.++| + +++.|..+..+.+.-. .+
T Consensus 518 ~~~l~e~~~-----------------------------~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd 568 (1096)
T KOG1897|consen 518 DGGLREVSH-----------------------------KEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPD 568 (1096)
T ss_pred ccceeeeee-----------------------------heecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCC
Confidence 654222111 12456888998875 3 8888888776655433 23
Q ss_pred cceEEEee----cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe
Q 013717 242 LRCLESIK----AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA 316 (437)
Q Consensus 242 ~~~~~~~~----~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 316 (437)
...+.... .-...|.-..+-.|.. |.++..||.+..|-+..........+...-...++.--.|+..++.-+-+.
T Consensus 569 ~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~ 648 (1096)
T KOG1897|consen 569 LILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFAL 648 (1096)
T ss_pred cceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEe
Confidence 32222211 1233455555555455 999999999998866544433222232223345666566666555444444
Q ss_pred CCCcEEEEECC
Q 013717 317 CDRSILVWDRE 327 (437)
Q Consensus 317 ~dg~i~i~d~~ 327 (437)
.|.-..+|.-+
T Consensus 649 sdrP~viY~~n 659 (1096)
T KOG1897|consen 649 SDRPTVIYSSN 659 (1096)
T ss_pred CCCCEEEEecC
Confidence 56666676654
No 407
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.40 E-value=0.39 Score=46.70 Aligned_cols=121 Identities=14% Similarity=0.152 Sum_probs=75.3
Q ss_pred EEEEEEcc--CCCEEEEEeCCCcEEEEECCCC-----------cc---c--eEEeeeecccccceEEEEee--C--CEEE
Q 013717 300 VNALALSD--DGTVLFSGACDRSILVWDREDS-----------AN---H--MVVTGALRGHGKAILCLINV--A--GLLM 357 (437)
Q Consensus 300 i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~-----------~~---~--~~~~~~~~~~~~~i~~~~~~--~--~~l~ 357 (437)
|+.|.... +...|+++..||.|.+|.++.- .. . ..... .......+++++.. . .+||
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f-~~~v~~SaWGLdIh~~~~~rlIA 181 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFF-HLRVGASAWGLDIHDYKKSRLIA 181 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCe-EeecCCceeEEEEEecCcceEEE
Confidence 55554433 4568889999999999976420 00 0 00000 01123456777776 3 3888
Q ss_pred EEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCc-eEEEEEecCCCcEEEEeec
Q 013717 358 SGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNG-VVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 358 ~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~-~~~l~s~~~dg~i~iw~~~ 421 (437)
+++....|.||-............-..|...|-+|+|.++...+. ...|++++-.|.+.+|++.
T Consensus 182 VSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 182 VSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 888888888886654221111111223677899999998874322 2478899999999999983
No 408
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=95.18 E-value=2.3 Score=38.42 Aligned_cols=63 Identities=13% Similarity=0.141 Sum_probs=31.6
Q ss_pred CCEEEEEecC--eEEEEeCC--CCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecC-----------CeEEEEeCCC
Q 013717 108 HNFLYAASSH--EINVYDRT--GTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQD-----------CKIRVWQLTP 171 (437)
Q Consensus 108 ~~~l~s~~~d--~v~vwd~~--~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~d-----------g~i~iwd~~~ 171 (437)
+...+.|+.. .+.++|++ ..+|..+..+.. ....-.+++..++. .+.|+.+ ..+..||..+
T Consensus 18 ~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~---~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~ 94 (346)
T TIGR03547 18 DKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPG---GPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKK 94 (346)
T ss_pred CEEEEEccccCCeeEEEECCCCCCCceECCCCCC---CCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCC
Confidence 4444445543 77778863 345666555421 11111233444555 5566542 2466677766
Q ss_pred Cc
Q 013717 172 TK 173 (437)
Q Consensus 172 ~~ 173 (437)
.+
T Consensus 95 ~~ 96 (346)
T TIGR03547 95 NS 96 (346)
T ss_pred CE
Confidence 54
No 409
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.14 E-value=1.8 Score=44.59 Aligned_cols=76 Identities=9% Similarity=0.288 Sum_probs=53.8
Q ss_pred ccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccc--------------------eeeEEee-CccccEEEEEEccCC
Q 013717 251 HEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRH--------------------ALIATLE-KHKSAVNALALSDDG 309 (437)
Q Consensus 251 ~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~--------------------~~~~~~~-~~~~~i~~~~~~~~~ 309 (437)
..-.|+|+....+|+++.++.|| .+|.+....... ..+..+. .+..+|..+.....-
T Consensus 177 dg~~V~~I~~t~nGRIF~~G~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR 254 (1311)
T KOG1900|consen 177 DGVSVNCITYTENGRIFFAGRDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR 254 (1311)
T ss_pred CCceEEEEEeccCCcEEEeecCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc
Confidence 45678999988899988888888 455432111000 0011222 456799999999888
Q ss_pred CEEEEEeCCCcEEEEECCC
Q 013717 310 TVLFSGACDRSILVWDRED 328 (437)
Q Consensus 310 ~~l~~~~~dg~i~i~d~~~ 328 (437)
+.+.+-++.|+|.+||+..
T Consensus 255 ~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 255 NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred ceeeeeccCceEEEEEccC
Confidence 8999999999999999976
No 410
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.11 E-value=1.9 Score=36.89 Aligned_cols=166 Identities=10% Similarity=0.043 Sum_probs=99.9
Q ss_pred cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeC-ccccEEEEEEccCCCEEEEEeCCCcEEEEECC
Q 013717 250 AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEK-HKSAVNALALSDDGTVLFSGACDRSILVWDRE 327 (437)
Q Consensus 250 ~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (437)
+....+.++.|+|+.+ |++......-.++ -...+..++++.- .-.....+.+..+|++.++--.++.+.++.+.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVE----lt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd 158 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVE----LTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVD 158 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEE----EecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEc
Confidence 4455699999999998 7666666665555 2333345555432 12344567788788888887788999988877
Q ss_pred CCccceEEee------eecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCC-------CCeeEE
Q 013717 328 DSANHMVVTG------ALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHT-------KPVKSL 392 (437)
Q Consensus 328 ~~~~~~~~~~------~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~-------~~v~~l 392 (437)
.......... .........-.+++++. .|+.+-+-.-+.||.+........+.....+. ..|.++
T Consensus 159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl 238 (316)
T COG3204 159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL 238 (316)
T ss_pred CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence 6533222111 11111344456677654 77777777778888776433211222222222 246777
Q ss_pred EEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717 393 TAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 393 ~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
.|.+..+. +|+-+.+++.+.--+....
T Consensus 239 ~~~~~~~~----LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 239 EFNAITNS----LLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred eecCCCCc----EEEEecCCceEEEEecCCC
Confidence 77766554 7777777777766665544
No 411
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.09 E-value=2.7 Score=38.67 Aligned_cols=280 Identities=11% Similarity=0.096 Sum_probs=147.8
Q ss_pred CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEe---C---CeEEEEecCCeEEEEeCCCCcccccccc
Q 013717 108 HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC---D---GKIFTAHQDCKIRVWQLTPTKHHKLKTT 180 (437)
Q Consensus 108 ~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 180 (437)
.+.++.|+.. .++||+...+..+....+ ....-..+|..|..- + +..++.-.-..+.+|.+.......
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~ll-lE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~---- 111 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLL-LETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTV---- 111 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEE-EEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCc----
Confidence 4689999988 999999976433221111 112345788888753 1 224555667788888873221000
Q ss_pred cCccccceeeecCCCCeeEEeeccceeeecCCC--cEEEEEe---CC----CeEEEEECCCcEEEEECCCcceEEEeecc
Q 013717 181 LPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGD--AVTGLAV---NN----GLIYSVSWDKSLKIWRASDLRCLESIKAH 251 (437)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~---~~----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 251 (437)
..+....+ .....|.- ....+++ .. .++.+=+-||.+.+|+-+.......+..
T Consensus 112 ------------~~g~~~~L-----~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~- 173 (418)
T PF14727_consen 112 ------------EHGNQYQL-----ELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD- 173 (418)
T ss_pred ------------ccCcEEEE-----EEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-
Confidence 00001111 11112221 1222222 21 7888889999999999776554444432
Q ss_pred cccEEEEEEecCCe-EEEEeCCCeEEEecCCC---C----------------cccceeeEEeeCccccEEE---EEEccC
Q 013717 252 EDAVNAVAVSAGGT-VYTGSADRKIRVWAKPF---N----------------EKRHALIATLEKHKSAVNA---LALSDD 308 (437)
Q Consensus 252 ~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~---~----------------~~~~~~~~~~~~~~~~i~~---~~~~~~ 308 (437)
-----.+.|.+... |++++.+..|..|.... . .+....-.++. -...+.. +.++..
T Consensus 174 ~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~ 252 (418)
T PF14727_consen 174 FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSS 252 (418)
T ss_pred CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCC
Confidence 11223456776666 99999999999985421 0 00011111111 1223333 333333
Q ss_pred CCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEe----eCC---EEEEEeCCCcEEEeeCCCCCCeeeeee
Q 013717 309 GTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLIN----VAG---LLMSGSADRTVRIWQRGSDGRFGCLAV 381 (437)
Q Consensus 309 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~ 381 (437)
...+++-+ ...+.+.+-. | ...+...+.........+.. .++ .++.++.++++.||.-.+ ++..
T Consensus 253 ~~~IvvLg-er~Lf~l~~~-G--~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~-----L~Ws 323 (418)
T PF14727_consen 253 ESDIVVLG-ERSLFCLKDN-G--SLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTT-----LVWS 323 (418)
T ss_pred CceEEEEe-cceEEEEcCC-C--eEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCe-----EEEe
Confidence 33444433 3456666643 2 22233334333322222222 222 588999999999997554 4444
Q ss_pred ecCCCCCeeEEEEEc--cCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 382 LEGHTKPVKSLTAVT--EEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 382 ~~~h~~~v~~l~~~~--~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
.+....+| +|.... +-+. +|++-+.+|.+.+-=+-+..+
T Consensus 324 A~l~~~PV-al~v~~~~~~~G----~IV~Ls~~G~L~v~YLGTdPs 364 (418)
T PF14727_consen 324 AQLPHVPV-ALSVANFNGLKG----LIVSLSDEGQLSVSYLGTDPS 364 (418)
T ss_pred cCCCCCCE-EEEecccCCCCc----eEEEEcCCCcEEEEEeCCCCc
Confidence 44334444 444332 2222 899999999999988877654
No 412
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.05 E-value=1.6 Score=35.86 Aligned_cols=149 Identities=11% Similarity=0.117 Sum_probs=86.2
Q ss_pred cccEEEEEEecCCeEEEEeCC----------CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEE-EeCCCc
Q 013717 252 EDAVNAVAVSAGGTVYTGSAD----------RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFS-GACDRS 320 (437)
Q Consensus 252 ~~~v~~~~~~~~~~l~~~~~d----------g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~ 320 (437)
+...+.-..+|+|++..|.+. |.++.|-.... +..+...-.--+.++|+.+.+.+.. -+.+-.
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~------v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~ 181 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ------VELIWNCVGISNGLAWDSDAKKFYYIDSLNYE 181 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCC------ceeeehhccCCccccccccCcEEEEEccCceE
Confidence 445666677899997666542 34444432110 1111122233467888887775554 455667
Q ss_pred EEEEE--CCCCcc-----ceEEee--eecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeE
Q 013717 321 ILVWD--REDSAN-----HMVVTG--ALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKS 391 (437)
Q Consensus 321 i~i~d--~~~~~~-----~~~~~~--~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~ 391 (437)
|.-|| ..++.. ...+.. .+......-+++.-.|++.++.-..++|...|..+++ .+.++.-....|++
T Consensus 182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK---~L~eiklPt~qits 258 (310)
T KOG4499|consen 182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGK---ILLEIKLPTPQITS 258 (310)
T ss_pred EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCc---EEEEEEcCCCceEE
Confidence 76777 433321 111111 0111111125666677788888888999999999988 66666666889999
Q ss_pred EEEEccCCCCceEEEEEecCC
Q 013717 392 LTAVTEEGQNGVVSVFSGSLD 412 (437)
Q Consensus 392 l~~~~~~~~~~~~~l~s~~~d 412 (437)
++|-...-. .+.+|+..+
T Consensus 259 ccFgGkn~d---~~yvT~aa~ 276 (310)
T KOG4499|consen 259 CCFGGKNLD---ILYVTTAAK 276 (310)
T ss_pred EEecCCCcc---EEEEEehhc
Confidence 999754211 355555543
No 413
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.90 E-value=4.6 Score=40.26 Aligned_cols=79 Identities=11% Similarity=0.150 Sum_probs=51.2
Q ss_pred ccEEEEEEecCCe-EEEEeCCCeEEEecCCCC--c-------ccceeeEEe--------eCccccEEEEEEccC---CCE
Q 013717 253 DAVNAVAVSAGGT-VYTGSADRKIRVWAKPFN--E-------KRHALIATL--------EKHKSAVNALALSDD---GTV 311 (437)
Q Consensus 253 ~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~--~-------~~~~~~~~~--------~~~~~~i~~~~~~~~---~~~ 311 (437)
-.|..|.++|+|. ++..+..|...+ .+... . ......+.+ ......|..+.|+|. +.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3688899999999 666666554443 33211 0 000011111 133457899999996 579
Q ss_pred EEEEeCCCcEEEEECCCCccc
Q 013717 312 LFSGACDRSILVWDREDSANH 332 (437)
Q Consensus 312 l~~~~~dg~i~i~d~~~~~~~ 332 (437)
|++-..|+++++||+.....+
T Consensus 164 l~vLtsdn~lR~y~~~~~~~p 184 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQHP 184 (717)
T ss_pred EEEEecCCEEEEEecCCCCCC
Confidence 999999999999999865443
No 414
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.89 E-value=0.42 Score=48.15 Aligned_cols=124 Identities=10% Similarity=0.045 Sum_probs=77.7
Q ss_pred EEEECCCcEEEEECCCcceEE-----Eee------cccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCcccceeeEE
Q 013717 226 YSVSWDKSLKIWRASDLRCLE-----SIK------AHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNEKRHALIAT 292 (437)
Q Consensus 226 ~~~~~dg~i~iwd~~~~~~~~-----~~~------~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~~~~~~~~~ 292 (437)
+..+.+-.|..||+++...-. -+. .......++.|+|.-. .++...|+.|++..+..... ....
T Consensus 118 ~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~---~v~s 194 (1405)
T KOG3630|consen 118 VSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQ---NVTS 194 (1405)
T ss_pred EEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhh---hhcc
Confidence 334445578899997653221 111 1233456778887654 77888899999986542211 1111
Q ss_pred eeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC
Q 013717 293 LEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG 354 (437)
Q Consensus 293 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 354 (437)
+ ......++++|+|.|+.++.|-..|++.-|...-.. ...+..........|.++.|-+.
T Consensus 195 ~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei-k~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 195 F-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI-KSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred c-CcccceeeEEeccccceeeEecCCCeEEEeecccce-eecccCCCcCCCcceeEEEEecc
Confidence 1 245678999999999999999999999999865321 11111111112467889998876
No 415
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.82 E-value=0.14 Score=49.93 Aligned_cols=165 Identities=12% Similarity=0.079 Sum_probs=95.7
Q ss_pred cccccEEEEEEecCCe--EEEEeCCCeEEEecCCCCc--ccce-eeEEeeCccccEEEEEEcc---CCCEEEEEeCCCcE
Q 013717 250 AHEDAVNAVAVSAGGT--VYTGSADRKIRVWAKPFNE--KRHA-LIATLEKHKSAVNALALSD---DGTVLFSGACDRSI 321 (437)
Q Consensus 250 ~~~~~v~~~~~~~~~~--l~~~~~dg~v~iwd~~~~~--~~~~-~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~i 321 (437)
+..+.|-.+.|-.-.. +. -.-|.+.+||++.-. .... .+.........+.-+.|.| +.-++..+..++.|
T Consensus 130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i 207 (1283)
T KOG1916|consen 130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEI 207 (1283)
T ss_pred cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCce
Confidence 4555666666642221 22 233677788765311 1111 2222333445566667766 56688888889999
Q ss_pred EEEECCCCccceEEeeeecccccc-------------eEEEEeeCCEEEEEeCCCcEEEeeCCCC--CCeeeeeeecCCC
Q 013717 322 LVWDREDSANHMVVTGALRGHGKA-------------ILCLINVAGLLMSGSADRTVRIWQRGSD--GRFGCLAVLEGHT 386 (437)
Q Consensus 322 ~i~d~~~~~~~~~~~~~~~~~~~~-------------i~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~h~ 386 (437)
++..+..... ..+.+|... +-.++++|..++.+..||.+++|.+.-. ....|+...+.|.
T Consensus 208 ~lL~~~ra~~-----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 208 RLLNINRALR-----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eEeeechHHH-----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence 9888765332 112334433 3456778889999999999998876422 2334677777787
Q ss_pred -CCeeEEEEEccCCC----CceEEEEEecCC-CcEEEEeec
Q 013717 387 -KPVKSLTAVTEEGQ----NGVVSVFSGSLD-GEIRAWQVS 421 (437)
Q Consensus 387 -~~v~~l~~~~~~~~----~~~~~l~s~~~d-g~i~iw~~~ 421 (437)
.+-.|.-|+..... ...++++++++- ..+++|.-.
T Consensus 283 ~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a 323 (1283)
T KOG1916|consen 283 KHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEA 323 (1283)
T ss_pred CCCceeeeeccccccCCccceeEEEEecccCCcceeEeecc
Confidence 44444444433322 234567777654 468999743
No 416
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.78 E-value=2.3 Score=36.19 Aligned_cols=231 Identities=14% Similarity=0.172 Sum_probs=112.7
Q ss_pred EEEEeCCe---EEEEecCCe-EEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC
Q 013717 147 SVTFCDGK---IFTAHQDCK-IRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN 222 (437)
Q Consensus 147 ~l~~~~~~---l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 222 (437)
.|+++|.. ++.+-.-|+ ..++|.+..+....+. ..+.+.|.+|.- |++
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~----------------------s~~~RHfyGHGv------fs~ 123 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLV----------------------SQEGRHFYGHGV------FSP 123 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEe----------------------cccCceeecccc------cCC
Confidence 45555432 444544444 4567877766444333 223344455642 555
Q ss_pred --CeEEEEEC-----CCcEEEEECCCc-ceEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEe--------cCCCCcc
Q 013717 223 --GLIYSVSW-----DKSLKIWRASDL-RCLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVW--------AKPFNEK 285 (437)
Q Consensus 223 --~~l~~~~~-----dg~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iw--------d~~~~~~ 285 (437)
.+|+..-. -|.|-|||.+.+ +.+.++..|.-.-..+.+.+||+ ++.+. |-|..- +++..+.
T Consensus 124 dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMeP 201 (366)
T COG3490 124 DGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEP 201 (366)
T ss_pred CCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCc
Confidence 45554432 377999998753 45666777777778899999999 44432 222222 1111111
Q ss_pred ccee--------eE--Eee--CccccEEEEEEccCCCEEEEEeCCCcE----EEEECCCCccceEEeee----ecccccc
Q 013717 286 RHAL--------IA--TLE--KHKSAVNALALSDDGTVLFSGACDRSI----LVWDREDSANHMVVTGA----LRGHGKA 345 (437)
Q Consensus 286 ~~~~--------~~--~~~--~~~~~i~~~~~~~~~~~l~~~~~dg~i----~i~d~~~~~~~~~~~~~----~~~~~~~ 345 (437)
...+ +. ++. .+...|..++..+||+.++.+-..|.- -+.-.........+... .......
T Consensus 202 Slvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anY 281 (366)
T COG3490 202 SLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANY 281 (366)
T ss_pred cEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhh
Confidence 1111 11 111 234567888888888766554332210 00000011111111100 0111223
Q ss_pred eEEEEee--CC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEe
Q 013717 346 ILCLINV--AG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQ 419 (437)
Q Consensus 346 i~~~~~~--~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~ 419 (437)
|-+++.+ .. ..+++-..+...+||..++. .+..- --.....++-...+ ++..+.+|.+.++.
T Consensus 282 igsiA~n~~~glV~lTSP~GN~~vi~da~tG~---vv~~a--~l~daaGva~~~~g-------f~vssg~G~~~~~s 346 (366)
T COG3490 282 IGSIAANRRDGLVALTSPRGNRAVIWDAATGA---VVSEA--ALPDAAGVAAAKGG-------FAVSSGQGRIIFYS 346 (366)
T ss_pred hhheeecccCCeEEEecCCCCeEEEEEcCCCc---EEecc--cccccccceeccCc-------eEEecCCceEEecc
Confidence 4455555 23 44445556678899999987 22111 11122334333433 55566688998884
No 417
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.74 E-value=0.21 Score=28.68 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=25.9
Q ss_pred ccEEEEEEccCC---CEEEEEeCCCcEEEEECCC
Q 013717 298 SAVNALALSDDG---TVLFSGACDRSILVWDRED 328 (437)
Q Consensus 298 ~~i~~~~~~~~~---~~l~~~~~dg~i~i~d~~~ 328 (437)
+.+.++.|+|+. .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468899999844 4888888889999999985
No 418
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.62 E-value=0.84 Score=41.30 Aligned_cols=134 Identities=4% Similarity=-0.000 Sum_probs=82.2
Q ss_pred EEEEeCC-CeEEEEECCCcEEEEECCCcc---eEEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceee
Q 013717 216 TGLAVNN-GLIYSVSWDKSLKIWRASDLR---CLESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALI 290 (437)
Q Consensus 216 ~~~~~~~-~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~ 290 (437)
+.+-|+. +..+.+...|.+.-|-+.... ++..-...+++|.++.|++|++ +|+--.+..|.+++...+.......
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~ 105 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYT 105 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHH
Confidence 4444544 333334444555555443221 1222224567999999999999 8999999999999875554444444
Q ss_pred EEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCC
Q 013717 291 ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAG 354 (437)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 354 (437)
.+.+.....|....|+.+ .-++.....| +-+|.....++.... ...|...|..+.|..+
T Consensus 106 ~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRl---Vks~~~nvnWy~yc~e 164 (657)
T KOG2377|consen 106 QECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRL---VKSHNLNVNWYMYCPE 164 (657)
T ss_pred HHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhh---hhhcccCccEEEEccc
Confidence 445555667999999866 4555555444 777776544333222 3446667777777655
No 419
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=94.58 E-value=4.1 Score=38.29 Aligned_cols=272 Identities=10% Similarity=0.117 Sum_probs=140.5
Q ss_pred CccCCeEEEEee-CCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEe-CCeEEEEecCCeEEEEeCCCCc
Q 013717 96 GHKLPIGCIAVH-HNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC-DGKIFTAHQDCKIRVWQLTPTK 173 (437)
Q Consensus 96 ~h~~~V~~l~~~-~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iwd~~~~~ 173 (437)
--..+|.++.++ ...+..|+.+-+..||..+++.-..... ....+|..+..+ .+++..|+.+| +.+.+.+..+
T Consensus 162 l~d~~V~aLv~D~~g~lWvgT~dGL~~fd~~~gkalql~s~----~~dk~I~al~~d~qg~LWVGTdqG-v~~~e~~G~~ 236 (671)
T COG3292 162 LKDTPVVALVFDANGRLWVGTPDGLSYFDAGRGKALQLASP----PLDKAINALIADVQGRLWVGTDQG-VYLQEAEGWR 236 (671)
T ss_pred ccCccceeeeeeccCcEEEecCCcceEEccccceEEEcCCC----cchhhHHHHHHHhcCcEEEEeccc-eEEEchhhcc
Confidence 445678889998 7788889988888888887533333221 233566666666 45588888877 6666665422
Q ss_pred ccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEe-e--
Q 013717 174 HHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESI-K-- 249 (437)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~-~-- 249 (437)
....... -....|..+.-+. ..+-.|+.+|..+. ........... +
T Consensus 237 ~sn~~~~-----------------------------lp~~~I~ll~qD~qG~lWiGTenGl~r~-~l~rq~Lq~~~~~~~ 286 (671)
T COG3292 237 ASNWGPM-----------------------------LPSGNILLLVQDAQGELWIGTENGLWRT-RLPRQGLQIPLSKMH 286 (671)
T ss_pred ccccCCC-----------------------------CcchheeeeecccCCCEEEeecccceeE-ecCCCCccccccccC
Confidence 1111111 1334555555555 77888887775433 22222222111 1
Q ss_pred cccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccc-cEEEEEEcc--CCCEEEEEeCCCcEEEEEC
Q 013717 250 AHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKS-AVNALALSD--DGTVLFSGACDRSILVWDR 326 (437)
Q Consensus 250 ~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~i~~~~~~~--~~~~l~~~~~dg~i~i~d~ 326 (437)
..-..|.++-...+|.+.+++.+|.+++-+- .+.....+....+ .+...+..| .+..+.-...-|.+.+-+-
T Consensus 287 l~~S~vnsL~~D~dGsLWv~t~~giv~~~~a-----~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~ 361 (671)
T COG3292 287 LGVSTVNSLWLDTDGSLWVGTYGGIVRYLTA-----DWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANG 361 (671)
T ss_pred CccccccceeeccCCCEeeeccCceEEEecc-----hhhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecC
Confidence 1234567777777888999999998887532 1222222222111 111112222 1222222222333334343
Q ss_pred CCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecC-CCCCeeEEEEEccCCCCceEE
Q 013717 327 EDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEG-HTKPVKSLTAVTEEGQNGVVS 405 (437)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~ 405 (437)
.++..... ....++..-...+++- ...+-.|+...-+-.|+.++.. ..+....+ -.++|..|.-.|+++
T Consensus 362 stG~~v~s-v~q~Rg~nit~~~~d~-~g~lWlgs~q~GLsrl~n~n~~--avlde~agl~ss~V~aived~dns------ 431 (671)
T COG3292 362 STGELVRS-VHQLRGMNITTTLEDS-RGRLWLGSMQNGLSRLDNKNEW--AVLDEDAGLPSSEVSAIVEDPDNS------ 431 (671)
T ss_pred CCCcEEEE-eeeccccccchhhhcc-CCcEEEEecccchhhhccCCcc--cccccccCCcccceeeeeecCCCC------
Confidence 33332221 2222222222233333 3356666666446667666511 12222222 345777777777763
Q ss_pred EEEecCCCcEEE
Q 013717 406 VFSGSLDGEIRA 417 (437)
Q Consensus 406 l~s~~~dg~i~i 417 (437)
|.-|+.+|-++.
T Consensus 432 LWIGTs~Glvk~ 443 (671)
T COG3292 432 LWIGTSGGLVKR 443 (671)
T ss_pred EEEeccCCeEec
Confidence 777888876654
No 420
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.56 E-value=3.4 Score=37.24 Aligned_cols=180 Identities=11% Similarity=0.114 Sum_probs=84.1
Q ss_pred CCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCCC-----eEEEecCCCCcccceeeEEeeCccccEEEEE
Q 013717 231 DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSADR-----KIRVWAKPFNEKRHALIATLEKHKSAVNALA 304 (437)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg-----~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~ 304 (437)
...|.-.|+.+++....+. ....+..+.|+|... ++.=+.+| .-+||-++.+......+..-. ....+..=-
T Consensus 167 ~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEf 244 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM-EGESVGHEF 244 (386)
T ss_dssp -EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS----TTEEEEEEE
T ss_pred CceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC-CCccccccc
Confidence 3456777888887655554 566788899999766 44433322 236776655544333333222 233455556
Q ss_pred EccCCCEEEEE-----eCCCcEEEEECCCCccceEEeeeecccccceEEEE--eeCCEEEEEeCCC--------------
Q 013717 305 LSDDGTVLFSG-----ACDRSILVWDREDSANHMVVTGALRGHGKAILCLI--NVAGLLMSGSADR-------------- 363 (437)
Q Consensus 305 ~~~~~~~l~~~-----~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~l~~~~~dg-------------- 363 (437)
|.|||..|.-- +.+..|.-+|+.+++..... .. .....+. .++.+++-=+.|.
T Consensus 245 w~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~--~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~ 318 (386)
T PF14583_consen 245 WVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM--EM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIEN 318 (386)
T ss_dssp E-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE--EE-----SEEEEEE-TTSSEEEEEE-----------------
T ss_pred ccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE--eC----CceeeeEEcCCCCEEEecCCCCCccccccccceecC
Confidence 88999866542 22446777888776543211 11 1122222 2233443322221
Q ss_pred --cEEEeeCCCCCCeeeeee-------ecCCCC-CeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717 364 --TVRIWQRGSDGRFGCLAV-------LEGHTK-PVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 364 --~i~iwd~~~~~~~~~~~~-------~~~h~~-~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
-|++++++.+... .+.. +.+|.. .=-...|+||+.. +|++....|...||=++.+
T Consensus 319 ~p~i~~~~~~~~~~~-~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~----VlF~Sd~~G~~~vY~v~i~ 383 (386)
T PF14583_consen 319 DPWIYLFDVEAGRFR-KLARHDTSWKVLDGDRQVTHPHPSFSPDGKW----VLFRSDMEGPPAVYLVEIP 383 (386)
T ss_dssp --EEEEEETTTTEEE-EEEE-------BTTBSSTT----EE-TTSSE----EEEEE-TTSS-EEEEEE--
T ss_pred CcEEEEeccccCcee-eeeeccCcceeecCCCccCCCCCccCCCCCE----EEEECCCCCCccEEEEeCc
Confidence 4667787764421 1111 222221 1246789999874 8999999999888877654
No 421
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.42 E-value=2.5 Score=40.95 Aligned_cols=90 Identities=10% Similarity=0.110 Sum_probs=57.0
Q ss_pred CCcEEEEECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCC
Q 013717 231 DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGT 310 (437)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 310 (437)
--.|+||+. +|+.+..+.-..+.+..+.|+.+..|++...+|.+++|++-....... -.-+......|....|..+|-
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~-svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESN-SVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCCceEEEEeccceEEEeecchhhhccc-ccccccccCceeEEEEecCce
Confidence 345888886 566666665555588899999888899999999999998753321111 011122334566666666664
Q ss_pred EEEEEeCCCcEEEE
Q 013717 311 VLFSGACDRSILVW 324 (437)
Q Consensus 311 ~l~~~~~dg~i~i~ 324 (437)
.+++ .+|.+.+-
T Consensus 141 avlt--~~g~v~~i 152 (829)
T KOG2280|consen 141 AVLT--VSGQVILI 152 (829)
T ss_pred EEEe--cCCcEEEE
Confidence 4444 34555443
No 422
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.24 E-value=0.21 Score=50.13 Aligned_cols=96 Identities=14% Similarity=0.067 Sum_probs=65.5
Q ss_pred CcEEEEEeCC---CeEEEEECCCcEEEEECCCcce-EEEeecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccc
Q 013717 213 DAVTGLAVNN---GLIYSVSWDKSLKIWRASDLRC-LESIKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRH 287 (437)
Q Consensus 213 ~~v~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~ 287 (437)
....++.|+| ...+....|+.|++..+..... ...+ ......++++|+|.|+ ++.|-..|++.-|.....
T Consensus 156 vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le---- 230 (1405)
T KOG3630|consen 156 VFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE---- 230 (1405)
T ss_pred cccccccccCCccchhhhhccccchhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccc----
Confidence 4456778888 6677778899999887654322 2222 3456789999999999 999999999998854321
Q ss_pred eeeEEeeC----ccccEEEEEEccCCCEEEE
Q 013717 288 ALIATLEK----HKSAVNALALSDDGTVLFS 314 (437)
Q Consensus 288 ~~~~~~~~----~~~~i~~~~~~~~~~~l~~ 314 (437)
....+.+ ....|.+|.|.....++++
T Consensus 231 -ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 231 -IKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred -eeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 1111111 1467899999876655554
No 423
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=94.21 E-value=4.4 Score=37.15 Aligned_cols=63 Identities=16% Similarity=0.212 Sum_probs=31.0
Q ss_pred CCEEEEEec-C-eEEEEeCCC--CceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCC-----------eEEEEeCCC
Q 013717 108 HNFLYAASS-H-EINVYDRTG--TTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDC-----------KIRVWQLTP 171 (437)
Q Consensus 108 ~~~l~s~~~-d-~v~vwd~~~--~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg-----------~i~iwd~~~ 171 (437)
+...+.|+. + .+.++|++. ..+..+..+.. ....-.+++..++. ++.|+.+. .+..||..+
T Consensus 39 ~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~---~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~ 115 (376)
T PRK14131 39 NTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPG---GPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKT 115 (376)
T ss_pred CEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCC---CCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCC
Confidence 444444444 3 777888863 34655544321 11111233334555 55665432 366677765
Q ss_pred Cc
Q 013717 172 TK 173 (437)
Q Consensus 172 ~~ 173 (437)
.+
T Consensus 116 n~ 117 (376)
T PRK14131 116 NS 117 (376)
T ss_pred CE
Confidence 54
No 424
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.11 E-value=3.4 Score=35.41 Aligned_cols=158 Identities=18% Similarity=0.101 Sum_probs=85.4
Q ss_pred cEEEEEEecCCe-EEEEe---CCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEE-CCC
Q 013717 254 AVNAVAVSAGGT-VYTGS---ADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWD-RED 328 (437)
Q Consensus 254 ~v~~~~~~~~~~-l~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d-~~~ 328 (437)
.+.+.++++++. ++... ....|.++... .. ..... ....+..-.|++++...+....+...+++. ...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~---~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~ 97 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GP---VRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSAS 97 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Cc---ceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCC
Confidence 688999999998 55444 33445555432 21 11111 233677889999987777766666667764 333
Q ss_pred CccceEEeeeecccccceEEEEeeCC--EEEE---EeCCCcEEEeeCCCCCCe------eeeeeecCCCCCeeEEEEEcc
Q 013717 329 SANHMVVTGALRGHGKAILCLINVAG--LLMS---GSADRTVRIWQRGSDGRF------GCLAVLEGHTKPVKSLTAVTE 397 (437)
Q Consensus 329 ~~~~~~~~~~~~~~~~~i~~~~~~~~--~l~~---~~~dg~i~iwd~~~~~~~------~~~~~~~~h~~~v~~l~~~~~ 397 (437)
+........ ...-...|..+..+++ .++. ...++.|.+=-+...... ..+.........+++++|.++
T Consensus 98 g~~~~~~v~-~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~ 176 (253)
T PF10647_consen 98 GTGEPVEVD-WPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDD 176 (253)
T ss_pred CcceeEEec-ccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCC
Confidence 322221111 1111127777776655 3333 334577777655432211 122233334568999999998
Q ss_pred CCCCceEEEEEecCCCcEEE-EeeccC
Q 013717 398 EGQNGVVSVFSGSLDGEIRA-WQVSVS 423 (437)
Q Consensus 398 ~~~~~~~~l~s~~~dg~i~i-w~~~~~ 423 (437)
.. ..+++...++.+.. ..+..+
T Consensus 177 ~~----L~V~~~~~~~~~~~~v~~dG~ 199 (253)
T PF10647_consen 177 ST----LVVLGRSAGGPVVRLVSVDGG 199 (253)
T ss_pred CE----EEEEeCCCCCceeEEEEccCC
Confidence 84 23333344444444 444433
No 425
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.04 E-value=4.7 Score=36.87 Aligned_cols=193 Identities=18% Similarity=0.163 Sum_probs=103.4
Q ss_pred EEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEE
Q 013717 149 TFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSV 228 (437)
Q Consensus 149 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 228 (437)
+..++.+..+..+|.|.-.|.++++.+........ ...-..++ ......++.+
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~------------------------~~~~~~~~---~~~~G~i~~g 117 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGA------------------------VAQLSGPI---LGSDGKIYVG 117 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCc------------------------ceeccCce---EEeCCeEEEe
Confidence 34456677888899888888888864322221100 00001111 1113668899
Q ss_pred ECCCcEEEEECCCcceEEEeeccc-ccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeE----EeeCccccEEEE
Q 013717 229 SWDKSLKIWRASDLRCLESIKAHE-DAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIA----TLEKHKSAVNAL 303 (437)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~----~~~~~~~~i~~~ 303 (437)
+.+|.+..+|..+++.+....... ..+..-....++.+..++.+|.+...|..++...+.... .......++
T Consensus 118 ~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~--- 194 (370)
T COG1520 118 SWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPA--- 194 (370)
T ss_pred cccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCce---
Confidence 999999999999999888877544 122223333456666666788888887765553332211 111111111
Q ss_pred EEccCCCEEEEEeC--CCcEEEEECCCCccceEEeeeecccccce--E-E----EEeeCCEEEEEeCCCcEEEeeCCCCC
Q 013717 304 ALSDDGTVLFSGAC--DRSILVWDREDSANHMVVTGALRGHGKAI--L-C----LINVAGLLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 304 ~~~~~~~~l~~~~~--dg~i~i~d~~~~~~~~~~~~~~~~~~~~i--~-~----~~~~~~~l~~~~~dg~i~iwd~~~~~ 374 (437)
..++ .++.+.. ++.+.-+|..++............-...+ . . ....+.-+..++.++.+...|..+++
T Consensus 195 --~~~~-~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~ 271 (370)
T COG1520 195 --IASG-TVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGE 271 (370)
T ss_pred --eecc-eEEEecCCCcceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCc
Confidence 2233 3444444 56677778777765544321111111100 0 0 01112244667777878888888776
No 426
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.98 E-value=5 Score=36.97 Aligned_cols=143 Identities=13% Similarity=0.164 Sum_probs=78.9
Q ss_pred eEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC------CeEEE
Q 013717 154 KIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN------GLIYS 227 (437)
Q Consensus 154 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~l~~ 227 (437)
.++.|+..|.++||+.........-.. +-..-..+|..+.... ...++
T Consensus 39 ~IivGS~~G~LrIy~P~~~~~~~~~ll--------------------------lE~~l~~PILqv~~G~F~s~~~~~~La 92 (418)
T PF14727_consen 39 KIIVGSYSGILRIYDPSGNEFQPEDLL--------------------------LETQLKDPILQVECGKFVSGSEDLQLA 92 (418)
T ss_pred EEEEeccccEEEEEccCCCCCCCccEE--------------------------EEEecCCcEEEEEeccccCCCCcceEE
Confidence 499999999999999854431110000 0012334555554421 22333
Q ss_pred EECCCcEEEEECCC--cc-------eEEEeecc--cccEEEEEEec----CCe--EEEEeCCCeEEEecCCCCcccceee
Q 013717 228 VSWDKSLKIWRASD--LR-------CLESIKAH--EDAVNAVAVSA----GGT--VYTGSADRKIRVWAKPFNEKRHALI 290 (437)
Q Consensus 228 ~~~dg~i~iwd~~~--~~-------~~~~~~~~--~~~v~~~~~~~----~~~--l~~~~~dg~v~iwd~~~~~~~~~~~ 290 (437)
.-.-..+.+|.+.. +. .+..+..| ......+++-| .++ +.+=+.||.+.+|+-+. ....
T Consensus 93 VLhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~----~~f~ 168 (418)
T PF14727_consen 93 VLHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES----FAFS 168 (418)
T ss_pred EecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc----EEEE
Confidence 34455666666521 11 11222222 23344444443 223 78889999999996432 2222
Q ss_pred EEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECC
Q 013717 291 ATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDRE 327 (437)
Q Consensus 291 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 327 (437)
..+.. ---.-.+.|.+.-..|++++.+..+..|...
T Consensus 169 ~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 169 RFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred EEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHH
Confidence 22222 2233457788888899999999999998764
No 427
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.96 E-value=0.6 Score=38.84 Aligned_cols=70 Identities=10% Similarity=0.227 Sum_probs=51.5
Q ss_pred CCcEEEEEeCCCeEEEEECCCcEEEEECCCcceEEEe-------e-------cccccEEEEEEecCCeEEEEeCCCeEEE
Q 013717 212 GDAVTGLAVNNGLIYSVSWDKSLKIWRASDLRCLESI-------K-------AHEDAVNAVAVSAGGTVYTGSADRKIRV 277 (437)
Q Consensus 212 ~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~-------~~~~~v~~~~~~~~~~l~~~~~dg~v~i 277 (437)
..++..+....+++++.+.+|.+++||+.+++.+..- . .....|..+.+..+|..++.-.+|....
T Consensus 12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~ 91 (219)
T PF07569_consen 12 GSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYS 91 (219)
T ss_pred CCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEE
Confidence 3466678878899999999999999999998765432 1 2446788888888888333345678888
Q ss_pred ecCC
Q 013717 278 WAKP 281 (437)
Q Consensus 278 wd~~ 281 (437)
|+..
T Consensus 92 y~~~ 95 (219)
T PF07569_consen 92 YSPD 95 (219)
T ss_pred eccc
Confidence 8653
No 428
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.85 E-value=8.1 Score=38.92 Aligned_cols=69 Identities=12% Similarity=0.122 Sum_probs=40.8
Q ss_pred CCEEEEEecC-eEEEEeCCCCceeeeeccccCC----CCcccEEEEEEe------------------CCeEEEEecCCeE
Q 013717 108 HNFLYAASSH-EINVYDRTGTTWTSINTFNDND----SSSGSVKSVTFC------------------DGKIFTAHQDCKI 164 (437)
Q Consensus 108 ~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~----~h~~~v~~l~~~------------------~~~l~s~~~dg~i 164 (437)
++.|+.++.+ .|.-.|..+++..=........ .| .....+.+. +++++.++.|+.+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~-~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQH-QTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccc-ccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 7777777777 8888888886322111111000 00 011223332 3368888899999
Q ss_pred EEEeCCCCccccc
Q 013717 165 RVWQLTPTKHHKL 177 (437)
Q Consensus 165 ~iwd~~~~~~~~~ 177 (437)
.-.|.++++....
T Consensus 273 iALDA~TGk~~W~ 285 (764)
T TIGR03074 273 IALDADTGKLCED 285 (764)
T ss_pred EEEECCCCCEEEE
Confidence 9999999875543
No 429
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.85 E-value=2.6 Score=40.82 Aligned_cols=115 Identities=11% Similarity=0.187 Sum_probs=67.8
Q ss_pred ccEEEEEEecCCeEEEE-eCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEc--cCCCEEEEEeCCCcEEEEECC--
Q 013717 253 DAVNAVAVSAGGTVYTG-SADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALS--DDGTVLFSGACDRSILVWDRE-- 327 (437)
Q Consensus 253 ~~v~~~~~~~~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~i~d~~-- 327 (437)
....-+.-+.-++++.. +....+.|||.+... .+....+ ...+.|.++.|. |+|+.+++.+....|.+|.-.
T Consensus 30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~--lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~ 106 (631)
T PF12234_consen 30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGV--LEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRY 106 (631)
T ss_pred CCcceEeecccCcEEEEECCCCEEEEEEcCCcE--EEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccch
Confidence 34445555555664444 445679999987544 2222233 457789999986 589999998899999998542
Q ss_pred ---CCccceEEee--eecccc-cceEEEEeeCC-EEEEEeCCCcEEEeeCC
Q 013717 328 ---DSANHMVVTG--ALRGHG-KAILCLINVAG-LLMSGSADRTVRIWQRG 371 (437)
Q Consensus 328 ---~~~~~~~~~~--~~~~~~-~~i~~~~~~~~-~l~~~~~dg~i~iwd~~ 371 (437)
.......... .+..+. .+|....|-++ .+++|+ ++.+.|+|-.
T Consensus 107 dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk~ 156 (631)
T PF12234_consen 107 DYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDKW 156 (631)
T ss_pred hhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECCC
Confidence 1111111111 122233 45667777666 444444 4468888743
No 430
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.69 E-value=0.0025 Score=57.10 Aligned_cols=243 Identities=12% Similarity=0.098 Sum_probs=138.1
Q ss_pred CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCC--e-EEEEecCCeEEEEeCCCCcccccccccCc
Q 013717 108 HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDG--K-IFTAHQDCKIRVWQLTPTKHHKLKTTLPT 183 (437)
Q Consensus 108 ~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~ 183 (437)
+.-++.++.+ .+..||-... ..... .-.+....++|.-+ . ++.+-..+.+.+||+.+....+.-..-
T Consensus 46 ~~nlavaca~tiv~~YD~agq---~~le~----n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg-- 116 (615)
T KOG2247|consen 46 GHNLAVACANTIVIYYDKAGQ---VILEL----NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG-- 116 (615)
T ss_pred CCceehhhhhhHHHhhhhhcc---eeccc----CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC--
Confidence 4447777777 8999997763 22222 24566677888733 3 667778899999999865422221100
Q ss_pred cccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEe
Q 013717 184 VNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVS 261 (437)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~ 261 (437)
.|.... +.|++ ..++.+-..|.+.|++..+.+.+...-.|...++++++.
T Consensus 117 --------------------------~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~ 168 (615)
T KOG2247|consen 117 --------------------------TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT 168 (615)
T ss_pred --------------------------cchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEec
Confidence 122222 45555 667777788999999988877766665588999999999
Q ss_pred cCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEE-----EEE---EccCCCEEEEEeCCCcEEEE--ECCCCcc
Q 013717 262 AGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVN-----ALA---LSDDGTVLFSGACDRSILVW--DREDSAN 331 (437)
Q Consensus 262 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~-----~~~---~~~~~~~l~~~~~dg~i~i~--d~~~~~~ 331 (437)
+.+..+.++.|..+.+-...+.. ....+ ..+... .+. |..-|..+...- .|.+++. .+.....
T Consensus 169 lEd~vil~dcd~~L~v~~qeget-----a~lte-vggepdnm~~~y~k~n~w~kage~m~sVv-sgKkhl~yak~nE~D~ 241 (615)
T KOG2247|consen 169 LEDYVILCDCDNTLSVTTQEGET-----ASLTE-VGGEPDNMDFFYGKVNGWGKAGETMVSVV-SGKKHLMYAKYNELDE 241 (615)
T ss_pred ccceeeecCcHHHHHHhhhccce-----eeeee-ccCccchhhhheeeeeccccccceeeeee-ecHHHHHHHhhcCCCC
Confidence 99998888888777665332211 11111 111111 111 222233333221 1222221 1111111
Q ss_pred ceEEeeeecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEc
Q 013717 332 HMVVTGALRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT 396 (437)
Q Consensus 332 ~~~~~~~~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~ 396 (437)
+..+ .++...+.+.|..|-.+ +|..+..-|.|..-...+.+-...+.....|.+.+..++.+.
T Consensus 242 pval--~fq~~~gni~cyrwylDg~i~igf~ag~iV~iS~h~aeLgaeffqkldy~~aLqsiavsq 305 (615)
T KOG2247|consen 242 PVAL--QFQEKYGNIHCYRWYLDGYILIGFDAGYIVSISAHNAELGAEFFQKLDYRGALQSIAVSQ 305 (615)
T ss_pred ccce--EeeecCCceeEEEEeccccccccccceeEEEEeccchHHHHHHHHHhhHHhhhHHHHHHH
Confidence 1112 34445667788888777 888888888877777666552222222225666666555543
No 431
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=93.36 E-value=6.4 Score=36.19 Aligned_cols=110 Identities=9% Similarity=0.073 Sum_probs=67.1
Q ss_pred CCCcEEEEEeCC-CeEEEEECCCcEEEEECCCcc-----eEEEeec--ccccEEEEEEecCCeEEEEeCCCeEEEecCCC
Q 013717 211 HGDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLR-----CLESIKA--HEDAVNAVAVSAGGTVYTGSADRKIRVWAKPF 282 (437)
Q Consensus 211 ~~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~--~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~ 282 (437)
....+.++.+.+ ..++.++.+|.+..- ...++ ....... ....+.++.+.+++.++.++..|.+..-.-
T Consensus 279 ~~~~l~~v~~~~dg~l~l~g~~G~l~~S-~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D-- 355 (398)
T PLN00033 279 SARRIQNMGWRADGGLWLLTRGGGLYVS-KGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTD-- 355 (398)
T ss_pred CccceeeeeEcCCCCEEEEeCCceEEEe-cCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCC--
Confidence 345677888876 566666677776443 33443 1222221 223588999998888888888887776632
Q ss_pred CcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEE
Q 013717 283 NEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVW 324 (437)
Q Consensus 283 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 324 (437)
+.+.++....-..-....+.+.|.++++.+++| .+|.|.-|
T Consensus 356 ~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 356 GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 333333332222334678899998877666655 67776554
No 432
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.29 E-value=4.9 Score=38.02 Aligned_cols=151 Identities=13% Similarity=0.113 Sum_probs=86.0
Q ss_pred ccEEEEEEecCCe--EEEEe--CCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccC----CCEEEEEeCCCcEEEE
Q 013717 253 DAVNAVAVSAGGT--VYTGS--ADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDD----GTVLFSGACDRSILVW 324 (437)
Q Consensus 253 ~~v~~~~~~~~~~--l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~dg~i~i~ 324 (437)
.++..++|. ||+ +++.- .+|.+++=|- ..+..| ..|..+.|.|- -..|++......|.||
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds-------~viGqF----EhV~GlsW~P~~~~~~paLLAVQHkkhVtVW 87 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDS-------KVIGQF----EHVHGLSWAPPCTADTPALLAVQHKKHVTVW 87 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCc-------cEeecc----ceeeeeeecCcccCCCCceEEEeccceEEEE
Confidence 467888987 555 44432 3455554321 233333 45889999984 3355556678899999
Q ss_pred ECCCC---ccceEEeeee-cccccce--EEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEc
Q 013717 325 DREDS---ANHMVVTGAL-RGHGKAI--LCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVT 396 (437)
Q Consensus 325 d~~~~---~~~~~~~~~~-~~~~~~i--~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~ 396 (437)
.+... +.+....+.- -+..-++ ..+.|++. .|++-.....-.++++..... .....+ ...+.|.|.+|..
T Consensus 88 qL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s-rVkaDi-~~~G~IhCACWT~ 165 (671)
T PF15390_consen 88 QLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS-RVKADI-KTSGLIHCACWTK 165 (671)
T ss_pred EeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc-eEEEec-cCCceEEEEEecC
Confidence 98621 1111111110 0011111 33456655 555555555455667765442 122333 4567899999999
Q ss_pred cCCCCceEEEEEecCCCcEEEEeec
Q 013717 397 EEGQNGVVSVFSGSLDGEIRAWQVS 421 (437)
Q Consensus 397 ~~~~~~~~~l~s~~~dg~i~iw~~~ 421 (437)
||. +++++.|..=.-++||=.
T Consensus 166 DG~----RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 166 DGQ----RLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred cCC----EEEEEeCCeEEEEEecCc
Confidence 887 477777776677889844
No 433
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.24 E-value=0.68 Score=38.52 Aligned_cols=74 Identities=9% Similarity=0.166 Sum_probs=51.0
Q ss_pred cceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCee----eeeeec-------CCCCCeeEEEEEccCCCCceEEEEEecCC
Q 013717 344 KAILCLINVAGLLMSGSADRTVRIWQRGSDGRFG----CLAVLE-------GHTKPVKSLTAVTEEGQNGVVSVFSGSLD 412 (437)
Q Consensus 344 ~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~-------~h~~~v~~l~~~~~~~~~~~~~l~s~~~d 412 (437)
..+..+...+.+|++-+.+|.+++||+.+.+... ....+. .....|..+....+|- -+++-+ +
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~-----PiV~ls-n 86 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV-----PIVTLS-N 86 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC-----EEEEEe-C
Confidence 4566678888899999999999999999866210 001122 3556788888886663 355554 5
Q ss_pred CcEEEEeeccC
Q 013717 413 GEIRAWQVSVS 423 (437)
Q Consensus 413 g~i~iw~~~~~ 423 (437)
|..+.|+.+.+
T Consensus 87 g~~y~y~~~L~ 97 (219)
T PF07569_consen 87 GDSYSYSPDLG 97 (219)
T ss_pred CCEEEeccccc
Confidence 78888886654
No 434
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.82 E-value=7.5 Score=35.51 Aligned_cols=73 Identities=15% Similarity=0.206 Sum_probs=39.8
Q ss_pred ccEEEEEEecCCeEEEEeC------------CC-eEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC
Q 013717 253 DAVNAVAVSAGGTVYTGSA------------DR-KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR 319 (437)
Q Consensus 253 ~~v~~~~~~~~~~l~~~~~------------dg-~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 319 (437)
.....|+|.++|+|.++.. .+ .|.+++-............+.........+++.++| +++ +....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~~ 91 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPPD 91 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCCe
Confidence 3456788888888666542 23 676665332222222233333334456889999988 444 44444
Q ss_pred cEEEEECC
Q 013717 320 SILVWDRE 327 (437)
Q Consensus 320 ~i~i~d~~ 327 (437)
..++.|..
T Consensus 92 i~~~~d~~ 99 (367)
T TIGR02604 92 ILFLRDKD 99 (367)
T ss_pred EEEEeCCC
Confidence 33343543
No 435
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=92.72 E-value=5.6 Score=33.82 Aligned_cols=187 Identities=9% Similarity=0.040 Sum_probs=108.4
Q ss_pred eeeeecCccC--CeEEEEe-e-CCEEEEEe-cC--eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEE-EEecC
Q 013717 90 INSVQLGHKL--PIGCIAV-H-HNFLYAAS-SH--EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIF-TAHQD 161 (437)
Q Consensus 90 ~~~~~~~h~~--~V~~l~~-~-~~~l~s~~-~d--~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~-s~~~d 161 (437)
..+..+.|.. -...+.| . +.++-+.+ .+ .|+.+|+++++......+. ..--=..|+..++.|+ -.=.+
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~----~~~FgEGit~~~d~l~qLTWk~ 109 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLP----PRYFGEGITILGDKLYQLTWKE 109 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-T----TT--EEEEEEETTEEEEEESSS
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECC----ccccceeEEEECCEEEEEEecC
Confidence 4445555543 3557888 5 55555555 33 9999999998665555542 2334456666677744 34467
Q ss_pred CeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCC
Q 013717 162 CKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASD 241 (437)
Q Consensus 162 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~ 241 (437)
+...+||.++-+....+. ....=+.++.+...|+.......|+++|..+
T Consensus 110 ~~~f~yd~~tl~~~~~~~-------------------------------y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~ 158 (264)
T PF05096_consen 110 GTGFVYDPNTLKKIGTFP-------------------------------YPGEGWGLTSDGKRLIMSDGSSRLYFLDPET 158 (264)
T ss_dssp SEEEEEETTTTEEEEEEE--------------------------------SSS--EEEECSSCEEEE-SSSEEEEE-TTT
T ss_pred CeEEEEccccceEEEEEe-------------------------------cCCcceEEEcCCCEEEEECCccceEEECCcc
Confidence 889999998776544332 3345567777777777777788999999999
Q ss_pred cceEEEeecc-----cccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEee---------------CccccE
Q 013717 242 LRCLESIKAH-----EDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLE---------------KHKSAV 300 (437)
Q Consensus 242 ~~~~~~~~~~-----~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---------------~~~~~i 300 (437)
.+....+... -..++.+.+. +|. .|=.-....|...|..++. ....+. ....-.
T Consensus 159 f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~----V~~~iDls~L~~~~~~~~~~~~~~dVL 233 (264)
T PF05096_consen 159 FKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGK----VVGWIDLSGLRPEVGRDKSRQPDDDVL 233 (264)
T ss_dssp -SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-B----EEEEEE-HHHHHHHTSTTST--TTS-E
T ss_pred cceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCe----EEEEEEhhHhhhcccccccccccCCee
Confidence 8887776522 2346667765 566 4545556666666665543 222211 113457
Q ss_pred EEEEEccCCCEEEEEe
Q 013717 301 NALALSDDGTVLFSGA 316 (437)
Q Consensus 301 ~~~~~~~~~~~l~~~~ 316 (437)
+.|++.|....|+..+
T Consensus 234 NGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 234 NGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EeEeEeCCCCEEEEEe
Confidence 8999998766555443
No 436
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=92.71 E-value=7.9 Score=35.48 Aligned_cols=192 Identities=13% Similarity=0.144 Sum_probs=83.2
Q ss_pred CeEEEEE-CCCcEEEEECCCc----ceEEEeec---cc----ccEEEEEEecCCe-EEEE--eC----CCeEEEecCCCC
Q 013717 223 GLIYSVS-WDKSLKIWRASDL----RCLESIKA---HE----DAVNAVAVSAGGT-VYTG--SA----DRKIRVWAKPFN 283 (437)
Q Consensus 223 ~~l~~~~-~dg~i~iwd~~~~----~~~~~~~~---~~----~~v~~~~~~~~~~-l~~~--~~----dg~v~iwd~~~~ 283 (437)
++|+..+ ..+.|+|+|+.+. +..+.+.. +. ..-..+-.-|+|. ++++ .. -|.+.++|-++
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t- 166 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGET- 166 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT-
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCcc-
Confidence 6677666 7789999998743 33444432 11 1222333457786 4443 22 24566775432
Q ss_pred cccceeeEEeeCc---cccEEEEEEccCCCEEEEEeC--------------------CCcEEEEECCCCccceEEeeeec
Q 013717 284 EKRHALIATLEKH---KSAVNALALSDDGTVLFSGAC--------------------DRSILVWDREDSANHMVVTGALR 340 (437)
Q Consensus 284 ~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~--------------------dg~i~i~d~~~~~~~~~~~~~~~ 340 (437)
.......+.. ..--..+-+.|..+.+++... ..++++||+.+.+....+- +.
T Consensus 167 ---f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~id--Lg 241 (461)
T PF05694_consen 167 ---FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTID--LG 241 (461)
T ss_dssp -----EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEE--S-
T ss_pred ---ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEe--cC
Confidence 3344444432 223456777787777777542 3579999998765433322 22
Q ss_pred ccccceEEEEe--eCC---EEEEEeCCCcEEEeeCCCCCCeeeee--eecC-----------------CCCCeeEEEEEc
Q 013717 341 GHGKAILCLIN--VAG---LLMSGSADRTVRIWQRGSDGRFGCLA--VLEG-----------------HTKPVKSLTAVT 396 (437)
Q Consensus 341 ~~~~~i~~~~~--~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~-----------------h~~~v~~l~~~~ 396 (437)
......+.+.| ++. -++.+.-..+|..|--.....+..-. .+.. -..-|++|..+.
T Consensus 242 ~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl 321 (461)
T PF05694_consen 242 EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL 321 (461)
T ss_dssp TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-T
T ss_pred CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEcc
Confidence 22223444444 333 23333334445444332233232211 1111 124589999999
Q ss_pred cCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 397 EEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 397 ~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
|+.. +.+++=.+|.||.||+..+.
T Consensus 322 DDrf----LYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 322 DDRF----LYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp TS-E----EEEEETTTTEEEEEE-SSTT
T ss_pred CCCE----EEEEcccCCcEEEEecCCCC
Confidence 8853 66677779999999998764
No 437
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=92.62 E-value=7.3 Score=34.84 Aligned_cols=109 Identities=12% Similarity=0.121 Sum_probs=52.5
Q ss_pred EEeCCCeEEEEECC-----CcEEEEECCCcceE---EEeeccccc--EEEEEEecCCe-EEEEeC-----CCeEEEecCC
Q 013717 218 LAVNNGLIYSVSWD-----KSLKIWRASDLRCL---ESIKAHEDA--VNAVAVSAGGT-VYTGSA-----DRKIRVWAKP 281 (437)
Q Consensus 218 ~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~---~~~~~~~~~--v~~~~~~~~~~-l~~~~~-----dg~v~iwd~~ 281 (437)
+.+...+++.|+.+ ..+..+|+.+.+.. ..+..-..+ -.+++.. +++ ++.|+. ...+..||+.
T Consensus 69 ~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~ 147 (323)
T TIGR03548 69 VSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLE 147 (323)
T ss_pred EEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCC
Confidence 44444666667654 34667777665431 222111111 1122222 556 566654 2457788875
Q ss_pred CCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC----cEEEEECCCCc
Q 013717 282 FNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR----SILVWDREDSA 330 (437)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----~i~i~d~~~~~ 330 (437)
++ .+..+..+.... .....+...++++.+.|+.++ .+.+||.++.+
T Consensus 148 ~~--~W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 148 TQ--EWFELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred CC--CeeECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 43 343333222111 111122233567777777654 35688887643
No 438
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=92.43 E-value=8.2 Score=34.97 Aligned_cols=193 Identities=15% Similarity=0.152 Sum_probs=108.6
Q ss_pred CeEEEEECCCcEEEEECCCcceEEEeecccccEEEEEEe----cCCe---EEEEeCC----CeEEEecCCCCcccceeeE
Q 013717 223 GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVS----AGGT---VYTGSAD----RKIRVWAKPFNEKRHALIA 291 (437)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~----~~~~---l~~~~~d----g~v~iwd~~~~~~~~~~~~ 291 (437)
.+++....++-+.+||+. |+.++.+. .+.++.+..- -.|+ |++++.- ..|++|.+..... .+.
T Consensus 69 SlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g---~L~ 142 (381)
T PF02333_consen 69 SLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTG---ELT 142 (381)
T ss_dssp -EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTT---EEE
T ss_pred ceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCC---cce
Confidence 677888888999999985 55666664 2344444432 1343 5555532 5799997753221 122
Q ss_pred Eee-------CccccEEEEEEc--c-CCC-EEEEEeCCCcEEEEECCC---CccceEEeeeecccccceEEEEeeCC--E
Q 013717 292 TLE-------KHKSAVNALALS--D-DGT-VLFSGACDRSILVWDRED---SANHMVVTGALRGHGKAILCLINVAG--L 355 (437)
Q Consensus 292 ~~~-------~~~~~i~~~~~~--~-~~~-~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~--~ 355 (437)
.+. .....+..+++- + +|. +.+....+|.+..|.+.. +.....+.+.+.. ...+-.+..+.. +
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~ 221 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGR 221 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTE
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCC
Confidence 221 112346677763 3 454 667788899998888753 2222334444443 335666666655 8
Q ss_pred EEEEeCCCcEEEeeCCCCC--CeeeeeeecC--CCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717 356 LMSGSADRTVRIWQRGSDG--RFGCLAVLEG--HTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 356 l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
|+.+-++.-|.-|+.+... ....+....+ ....|..|+.....+. .+.+|+|.-.+++..+|+.+.+
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g-~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDG-KGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC--EEEEEEEGGGTEEEEEESSTT
T ss_pred EEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCC-CeEEEEEcCCCCeEEEEecCCC
Confidence 9999999777777776332 2233333332 3467889988764321 2356666667889999998754
No 439
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=92.37 E-value=14 Score=37.64 Aligned_cols=177 Identities=15% Similarity=0.146 Sum_probs=101.6
Q ss_pred cEEEEECCCcceEEEeecc----cccEEEEEEecCCe---EEEEe-----------CCCeEEEecCCCCcccceeeEEee
Q 013717 233 SLKIWRASDLRCLESIKAH----EDAVNAVAVSAGGT---VYTGS-----------ADRKIRVWAKPFNEKRHALIATLE 294 (437)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~~----~~~v~~~~~~~~~~---l~~~~-----------~dg~v~iwd~~~~~~~~~~~~~~~ 294 (437)
.|+++|..+++.+..+... .-.+.++.|+.... +++|. .+|.++.|++-.+....+.+....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 3788888877766655421 12455666654332 23332 234566666544443222322211
Q ss_pred CccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCC
Q 013717 295 KHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 295 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 374 (437)
-.+.+ .+..|-+.++++| ....+++||+-..+...... ...-...|..+.+.+..+++|...-.+.++..+...
T Consensus 934 -~~~~v--~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e--~k~~p~~Is~iqt~~~RI~VgD~qeSV~~~~y~~~~ 1007 (1205)
T KOG1898|consen 934 -IPGPV--GAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCE--LKFIPNRISSIQTYGARIVVGDIQESVHFVRYRRED 1007 (1205)
T ss_pred -CCccc--eEEeccCCEEEEe-cccEEEEeeCChHHHHhhhh--hccCceEEEEEeecceEEEEeeccceEEEEEEecCC
Confidence 22344 4455655566665 45689999997654333222 222456788888889999999887777766655433
Q ss_pred CeeeeeeecC--CCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717 375 RFGCLAVLEG--HTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 375 ~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
..+..+.. -...|+++.+-..+ .++.+..=|.+.+-++...
T Consensus 1008 --n~l~~fadD~~pR~Vt~~~~lD~~------tvagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1008 --NQLIVFADDPVPRHVTALELLDYD------TVAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred --CeEEEEeCCCccceeeEEEEecCC------ceeeccccCcEEEEECCCc
Confidence 23333332 23457777776665 4777777788777776543
No 440
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.63 E-value=0.77 Score=26.41 Aligned_cols=35 Identities=11% Similarity=0.060 Sum_probs=26.6
Q ss_pred CCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccC
Q 013717 387 KPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 387 ~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
+.|.++.|+|.... ..+|+-+-.-|.|.++|++.+
T Consensus 1 GAvR~~kFsP~~~~--~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGG--NDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCc--ccEEEEEccCCeEEEEEcccC
Confidence 46889999976540 027777777899999999964
No 441
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=91.47 E-value=8.1 Score=32.91 Aligned_cols=187 Identities=13% Similarity=0.060 Sum_probs=100.1
Q ss_pred cEEEEEe-CC-CeEEEEECCC--cEEEEECCCcceEEEeecc-cccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccce
Q 013717 214 AVTGLAV-NN-GLIYSVSWDK--SLKIWRASDLRCLESIKAH-EDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHA 288 (437)
Q Consensus 214 ~v~~~~~-~~-~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~ 288 (437)
-...+.+ .. .++-+.+.-| .|+.+|+.+++......-. .---..++...+.-....-.++...+||..+- +
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl----~ 121 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTL----K 121 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTT----E
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccc----e
Confidence 4457777 54 4445555555 6999999999887665521 22223344443322555567899999987643 3
Q ss_pred eeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeeccc-ccceEEEEeeCCEEE-EEeCCCcEE
Q 013717 289 LIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGH-GKAILCLINVAGLLM-SGSADRTVR 366 (437)
Q Consensus 289 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~l~-~~~~dg~i~ 366 (437)
.+.++. ..+.-..++ .||+.|+.......++++|..+.+....+.-...+. -..+..+.+-+..|. =.=....|.
T Consensus 122 ~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td~I~ 198 (264)
T PF05096_consen 122 KIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTDRIV 198 (264)
T ss_dssp EEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSSEEE
T ss_pred EEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCCeEE
Confidence 455554 234455666 467788888788899999988765433332221111 112344555444333 233344566
Q ss_pred EeeCCCCCCeeee------eeec------CCCCCeeEEEEEccCCCCceEEEEEecC
Q 013717 367 IWQRGSDGRFGCL------AVLE------GHTKPVKSLTAVTEEGQNGVVSVFSGSL 411 (437)
Q Consensus 367 iwd~~~~~~~~~~------~~~~------~h~~~v~~l~~~~~~~~~~~~~l~s~~~ 411 (437)
..|..++.....+ .... ...+-.+.||+.|..+ ++++||=.
T Consensus 199 ~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~----~l~vTGK~ 251 (264)
T PF05096_consen 199 RIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD----RLFVTGKL 251 (264)
T ss_dssp EEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT----EEEEEETT
T ss_pred EEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC----EEEEEeCC
Confidence 6666666521111 1000 1135689999999876 48888744
No 442
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=90.87 E-value=12 Score=33.67 Aligned_cols=57 Identities=16% Similarity=0.165 Sum_probs=35.3
Q ss_pred EEEEEeCCCcEEEeeCCCCCCeeeeee-ecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEE
Q 013717 355 LLMSGSADRTVRIWQRGSDGRFGCLAV-LEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIR 416 (437)
Q Consensus 355 ~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~ 416 (437)
++++.-..+.|....++.+........ +......+..|++.|++. ++++-+.+|.|.
T Consensus 273 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~-----Lyv~~d~~G~iy 330 (331)
T PF07995_consen 273 LFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGA-----LYVSDDSDGKIY 330 (331)
T ss_dssp EEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSE-----EEEEE-TTTTEE
T ss_pred EEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCe-----EEEEECCCCeEe
Confidence 555555566788777765442222333 334455899999999984 666666788774
No 443
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.09 E-value=4.4 Score=37.66 Aligned_cols=79 Identities=13% Similarity=0.041 Sum_probs=48.7
Q ss_pred cEEEEEEecCCe-EEEEeCCCeEEEecC-----CCCcccceee---EE-------ee-CccccEEEEEEccCC---CEEE
Q 013717 254 AVNAVAVSAGGT-VYTGSADRKIRVWAK-----PFNEKRHALI---AT-------LE-KHKSAVNALALSDDG---TVLF 313 (437)
Q Consensus 254 ~v~~~~~~~~~~-l~~~~~dg~v~iwd~-----~~~~~~~~~~---~~-------~~-~~~~~i~~~~~~~~~---~~l~ 313 (437)
.|..+..++.|. ++..+.+|.+.++=. ..-...++.. ++ +. ...-.+..++|+|+. ..|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 467777888888 788888887776521 1000111111 11 10 112245678899975 5777
Q ss_pred EEeCCCcEEEEECCCCccc
Q 013717 314 SGACDRSILVWDREDSANH 332 (437)
Q Consensus 314 ~~~~dg~i~i~d~~~~~~~ 332 (437)
.-+.|..|++||+......
T Consensus 185 iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred EEecCcEEEEEecCCcchh
Confidence 8888999999999865443
No 444
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.84 E-value=4.8 Score=41.77 Aligned_cols=146 Identities=16% Similarity=0.243 Sum_probs=86.7
Q ss_pred EECCCcEEEEECCCcceEEEeecccccEEEEEEe-c-------CCe-EEEEeCCCeEEEecCCCCccccee-----eEEe
Q 013717 228 VSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVS-A-------GGT-VYTGSADRKIRVWAKPFNEKRHAL-----IATL 293 (437)
Q Consensus 228 ~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~-~-------~~~-l~~~~~dg~v~iwd~~~~~~~~~~-----~~~~ 293 (437)
.+-|+.+.+|+.+++.....+.+.+..|..+..- | .=+ +++...--.|.++-+..+...... ...+
T Consensus 95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i 174 (1311)
T KOG1900|consen 95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI 174 (1311)
T ss_pred EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence 4568899999999987777777777777777643 2 112 444444455666644322221111 1122
Q ss_pred eCccccEEEEEEccCCCEEEEEeCCCcEEEE--ECCCC---c-cce-------------EEeeeecccccceEEEEeeCC
Q 013717 294 EKHKSAVNALALSDDGTVLFSGACDRSILVW--DREDS---A-NHM-------------VVTGALRGHGKAILCLINVAG 354 (437)
Q Consensus 294 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~--d~~~~---~-~~~-------------~~~~~~~~~~~~i~~~~~~~~ 354 (437)
.-.+..|+++....+|+.+++| .||.|+=. ....+ + +.. .+......+..+|..+..+..
T Consensus 175 ~~dg~~V~~I~~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S 253 (1311)
T KOG1900|consen 175 SVDGVSVNCITYTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS 253 (1311)
T ss_pred ecCCceEEEEEeccCCcEEEee-cCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence 2335678899988889877766 56644322 21111 0 000 011111245667877777654
Q ss_pred --EEEEEeCCCcEEEeeCCCCC
Q 013717 355 --LLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 355 --~l~~~~~dg~i~iwd~~~~~ 374 (437)
.+.+-++.|+|.+||+....
T Consensus 254 R~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred cceeeeeccCceEEEEEccCCC
Confidence 88999999999999998744
No 445
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.71 E-value=0.063 Score=48.57 Aligned_cols=226 Identities=10% Similarity=0.084 Sum_probs=121.2
Q ss_pred EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC---CeEEEEECC
Q 013717 155 IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN---GLIYSVSWD 231 (437)
Q Consensus 155 l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~d 231 (437)
++.++.+..+..||-....... . ...+....++|+. ..++.+-..
T Consensus 49 lavaca~tiv~~YD~agq~~le-~-------------------------------n~tg~aldm~wDkegdvlavlAek~ 96 (615)
T KOG2247|consen 49 LAVACANTIVIYYDKAGQVILE-L-------------------------------NPTGKALDMAWDKEGDVLAVLAEKT 96 (615)
T ss_pred eehhhhhhHHHhhhhhcceecc-c-------------------------------CCchhHhhhhhccccchhhhhhhcC
Confidence 8888888888888865332111 1 1223344555554 455566778
Q ss_pred CcEEEEECCCcceEEEee-cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCC
Q 013717 232 KSLKIWRASDLRCLESIK-AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDG 309 (437)
Q Consensus 232 g~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 309 (437)
+.+.+||+.+... +.+. +....-.-+.|++.+. ++.+...|.+.+++..... .+...-.|...++++++.+.+
T Consensus 97 ~piylwd~n~eyt-qqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR----~iiv~Gkh~RRgtq~av~lEd 171 (615)
T KOG2247|consen 97 GPIYLWDVNSEYT-QQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSR----RIIVMGKHQRRGTQIAVTLED 171 (615)
T ss_pred CCeeechhhhhhH-HHHhccCcchHHHHhhccCCccccccccccceEEEeccchh----hhhhhcccccceeEEEecccc
Confidence 9999999976422 2222 1111122267888777 8888899999999764332 222233378889999999877
Q ss_pred CEEEEEeCCCcEEEEECCCCccceEEee----eecccccceEEEEeeCCEEEEEeCCC-cEEEeeCCCCCCeeeeeeecC
Q 013717 310 TVLFSGACDRSILVWDREDSANHMVVTG----ALRGHGKAILCLINVAGLLMSGSADR-TVRIWQRGSDGRFGCLAVLEG 384 (437)
Q Consensus 310 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~ 384 (437)
+.+.++.|..+.+-...+..-.....+ ...+|-..+..+.-.+..+...-... .+..=.+........+ .++.
T Consensus 172 -~vil~dcd~~L~v~~qegeta~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval-~fq~ 249 (615)
T KOG2247|consen 172 -YVILCDCDNTLSVTTQEGETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVAL-QFQE 249 (615)
T ss_pred -eeeecCcHHHHHHhhhccceeeeeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccce-Eeee
Confidence 455555666554433322211110000 01111222222222233333221111 1111122221212233 5666
Q ss_pred CCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCCC
Q 013717 385 HTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 385 h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~~ 425 (437)
..+-+.+..|.-|+ +|.-+.+-|.|..-.+.+++.
T Consensus 250 ~~gni~cyrwylDg------~i~igf~ag~iV~iS~h~aeL 284 (615)
T KOG2247|consen 250 KYGNIHCYRWYLDG------YILIGFDAGYIVSISAHNAEL 284 (615)
T ss_pred cCCceeEEEEeccc------cccccccceeEEEEeccchHH
Confidence 67789999999987 566676667776666655544
No 446
>PLN02153 epithiospecifier protein
Probab=89.39 E-value=16 Score=32.97 Aligned_cols=154 Identities=12% Similarity=0.113 Sum_probs=69.6
Q ss_pred EeCCCeEEEEECC-------CcEEEEECCCcceEEEee-cccccE----EEEEEecCCe-EEEEeCC-----CeEEEecC
Q 013717 219 AVNNGLIYSVSWD-------KSLKIWRASDLRCLESIK-AHEDAV----NAVAVSAGGT-VYTGSAD-----RKIRVWAK 280 (437)
Q Consensus 219 ~~~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~-~~~~~v----~~~~~~~~~~-l~~~~~d-----g~v~iwd~ 280 (437)
.....+++.|+.+ ..+.+||+.+.+-...-. ...... .+++.. +++ ++.|+.+ ..+.+||.
T Consensus 30 ~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 30 VVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV-GTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred EECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE-CCEEEEECCCCCCCccCcEEEEEC
Confidence 3344556666653 357888887754322111 000110 112222 455 6666653 35677877
Q ss_pred CCCcccceeeEEeeC----ccccEEEEEEccCCCEEEEEeCC-----------CcEEEEECCCCccceEEeeeec---cc
Q 013717 281 PFNEKRHALIATLEK----HKSAVNALALSDDGTVLFSGACD-----------RSILVWDREDSANHMVVTGALR---GH 342 (437)
Q Consensus 281 ~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~~~---~~ 342 (437)
.++ .+..+..+.. ....-.+++. -++++++.|+.+ ..+.+||..+.+ +....... ..
T Consensus 109 ~t~--~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~--W~~l~~~~~~~~~ 183 (341)
T PLN02153 109 VKN--EWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGK--WVQLPDPGENFEK 183 (341)
T ss_pred CCC--EEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEEEECCCCe--EeeCCCCCCCCCC
Confidence 543 3333322210 0111112222 356666666653 247788887643 22211110 11
Q ss_pred ccceEEEEeeCCEEEEEeCC-------------CcEEEeeCCCCCCeeee
Q 013717 343 GKAILCLINVAGLLMSGSAD-------------RTVRIWQRGSDGRFGCL 379 (437)
Q Consensus 343 ~~~i~~~~~~~~~l~~~~~d-------------g~i~iwd~~~~~~~~~~ 379 (437)
..........+.+++.|+.+ ..+.+||..+.+ +..+
T Consensus 184 r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~-W~~~ 232 (341)
T PLN02153 184 RGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK-WTEV 232 (341)
T ss_pred CCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCc-EEec
Confidence 11112233455555555432 458889988654 4433
No 447
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.39 E-value=4.7 Score=32.12 Aligned_cols=37 Identities=14% Similarity=0.024 Sum_probs=29.4
Q ss_pred CCeeEEEEEccCCC-CceEEEEEecCCCcEEEEeeccC
Q 013717 387 KPVKSLTAVTEEGQ-NGVVSVFSGSLDGEIRAWQVSVS 423 (437)
Q Consensus 387 ~~v~~l~~~~~~~~-~~~~~l~s~~~dg~i~iw~~~~~ 423 (437)
..|..++|+|.|-. .++-+|+....+|.|.||.-...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 47999999997632 34568999999999999986643
No 448
>PLN02153 epithiospecifier protein
Probab=89.38 E-value=16 Score=32.97 Aligned_cols=27 Identities=15% Similarity=0.051 Sum_probs=16.2
Q ss_pred EEEeCCCeEEEEECC-----CcEEEEECCCcc
Q 013717 217 GLAVNNGLIYSVSWD-----KSLKIWRASDLR 243 (437)
Q Consensus 217 ~~~~~~~~l~~~~~d-----g~i~iwd~~~~~ 243 (437)
.+.+...+++.|+.+ ..+.+||..+.+
T Consensus 81 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 81 MVAVGTKLYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred EEEECCEEEEECCCCCCCccCcEEEEECCCCE
Confidence 344444666666643 357788887654
No 449
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=89.27 E-value=3 Score=33.27 Aligned_cols=31 Identities=19% Similarity=0.197 Sum_probs=25.4
Q ss_pred ccEEEEEEccCC------CEEEEEeCCCcEEEEECCC
Q 013717 298 SAVNALALSDDG------TVLFSGACDRSILVWDRED 328 (437)
Q Consensus 298 ~~i~~~~~~~~~------~~l~~~~~dg~i~i~d~~~ 328 (437)
..+..++|||-| -+|++.+.+|.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999943 3788889999999998754
No 450
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.11 E-value=9.9 Score=35.37 Aligned_cols=138 Identities=12% Similarity=0.062 Sum_probs=77.5
Q ss_pred EEEEECCCcEEEEECCCcceEEEeecccccEEEEEEecCCe--------EEEEeCCCeEEEecCCCCcccceeeEEeeC-
Q 013717 225 IYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT--------VYTGSADRKIRVWAKPFNEKRHALIATLEK- 295 (437)
Q Consensus 225 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~--------l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~- 295 (437)
+..|+....++-.|++.|+.+..+..+..- -+.|.|+.+ -++|-.+..|.-.|.+........ ...+.
T Consensus 483 ~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v-~esKdY 559 (776)
T COG5167 483 YLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKV-VESKDY 559 (776)
T ss_pred EecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceee-eeehhc
Confidence 334556667888889999999999866654 567777542 344555556655565543321111 11111
Q ss_pred -ccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEe--eCCEEEEEeCCCcEEEeeCC
Q 013717 296 -HKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLIN--VAGLLMSGSADRTVRIWQRG 371 (437)
Q Consensus 296 -~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~dg~i~iwd~~ 371 (437)
......+..-... .++++|+..|.|++||--.-. ....+.+....|..+.. +|.++++.+. .++.+-|++
T Consensus 560 ~tKn~Fss~~tTes-GyIa~as~kGDirLyDRig~r----AKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 560 KTKNKFSSGMTTES-GYIAAASRKGDIRLYDRIGKR----AKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred cccccccccccccC-ceEEEecCCCceeeehhhcch----hhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 1222333333333 499999999999999953322 22234455556655544 4565544433 345565553
No 451
>PLN02193 nitrile-specifier protein
Probab=88.25 E-value=24 Score=33.56 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=28.8
Q ss_pred eEEEEeCCCCceeeeeccccCCCCcc-cEEEEEEeCCe-EEEEecC-----CeEEEEeCCCCc
Q 013717 118 EINVYDRTGTTWTSINTFNDNDSSSG-SVKSVTFCDGK-IFTAHQD-----CKIRVWQLTPTK 173 (437)
Q Consensus 118 ~v~vwd~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~-l~s~~~d-----g~i~iwd~~~~~ 173 (437)
.+.+||+.+..|......... .... .-.+++..++. ++.|+.+ ..+..+|+.+.+
T Consensus 194 ~v~~yD~~~~~W~~~~~~g~~-P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~ 255 (470)
T PLN02193 194 HLYVFDLETRTWSISPATGDV-PHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE 255 (470)
T ss_pred cEEEEECCCCEEEeCCCCCCC-CCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence 477899988877754332100 1101 11233334555 5666654 357777877654
No 452
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=88.05 E-value=21 Score=32.64 Aligned_cols=103 Identities=19% Similarity=0.301 Sum_probs=56.9
Q ss_pred CcEEEEEeCC-CeEEEEE------------CCC-cEEEEECCC--cc--eEEEeecccccEEEEEEecCCeEEEEeCCCe
Q 013717 213 DAVTGLAVNN-GLIYSVS------------WDK-SLKIWRASD--LR--CLESIKAHEDAVNAVAVSAGGTVYTGSADRK 274 (437)
Q Consensus 213 ~~v~~~~~~~-~~l~~~~------------~dg-~i~iwd~~~--~~--~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~ 274 (437)
.....|++++ ..|+++. ..+ .|.+++-.+ ++ ....+.........+++.+++ ++++.....
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i 92 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDI 92 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeE
Confidence 3456788887 4455553 223 677776543 22 223333334456889999888 666665544
Q ss_pred EEEecCCCCc----ccceeeEEeeC----ccccEEEEEEccCCCEEEEEe
Q 013717 275 IRVWAKPFNE----KRHALIATLEK----HKSAVNALALSDDGTVLFSGA 316 (437)
Q Consensus 275 v~iwd~~~~~----~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~ 316 (437)
.++.|...+. ....++..+.. +......++|.|||.+.++-+
T Consensus 93 ~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 93 LFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred EEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 4454554322 11122222322 134577899999998666544
No 453
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=87.97 E-value=11 Score=33.80 Aligned_cols=53 Identities=17% Similarity=0.225 Sum_probs=35.8
Q ss_pred cEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEe----eCccccEEEEEEccC
Q 013717 254 AVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATL----EKHKSAVNALALSDD 308 (437)
Q Consensus 254 ~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~----~~~~~~i~~~~~~~~ 308 (437)
.-++|+|.|+|+++++...|.|++++.. +.. ...+... .........++++|+
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~-g~~-~~~v~~~~~v~~~~~~gllgia~~p~ 59 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKD-GSL-KTPVADLPEVFADGERGLLGIAFHPD 59 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETT-TEE-CEEEEE-TTTBTSTTBSEEEEEE-TT
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCC-CcC-cceecccccccccccCCcccceeccc
Confidence 3578999999998888889999999832 221 1222222 234567899999994
No 454
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.81 E-value=9.7 Score=28.52 Aligned_cols=101 Identities=13% Similarity=0.163 Sum_probs=60.5
Q ss_pred CeEEEEECCCcEEEEECCCc--------ceEEEeecccccEEEEEEec----CCe-EEEEeCCCeEEEecCCCCccccee
Q 013717 223 GLIYSVSWDKSLKIWRASDL--------RCLESIKAHEDAVNAVAVSA----GGT-VYTGSADRKIRVWAKPFNEKRHAL 289 (437)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~~~----~~~-l~~~~~dg~v~iwd~~~~~~~~~~ 289 (437)
..|+.++..|+|.|++.... ..+..+. ....|++|+-.+ ++. ++.-+....|..||+..+....
T Consensus 11 pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~F-- 87 (136)
T PF14781_consen 11 PCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLF-- 87 (136)
T ss_pred eeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhh--
Confidence 56788888899999987643 2344443 566788887654 233 4444555689999997654211
Q ss_pred eEEeeCccccEEEEEEcc----CCCEEEEEeCCCcEEEEECCCCc
Q 013717 290 IATLEKHKSAVNALALSD----DGTVLFSGACDRSILVWDREDSA 330 (437)
Q Consensus 290 ~~~~~~~~~~i~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~ 330 (437)
++.-...++++.+-. +..++++| .+-.|.-||....+
T Consensus 88 ---yke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e 128 (136)
T PF14781_consen 88 ---YKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNE 128 (136)
T ss_pred ---hhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcE
Confidence 122345666666632 23344444 45667777765443
No 455
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=87.76 E-value=20 Score=32.05 Aligned_cols=63 Identities=13% Similarity=0.091 Sum_probs=31.6
Q ss_pred eCCCeEEEEEC-----CCcEEEEECCCcceEE--EeecccccEEEEEEecCCe-EEEEeCCC----eEEEecCCCC
Q 013717 220 VNNGLIYSVSW-----DKSLKIWRASDLRCLE--SIKAHEDAVNAVAVSAGGT-VYTGSADR----KIRVWAKPFN 283 (437)
Q Consensus 220 ~~~~~l~~~~~-----dg~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~~-l~~~~~dg----~v~iwd~~~~ 283 (437)
+...+.+.|+. ...+..||+.+.+-.. .+.. .......+..-+++ .+.|+.++ .+.+||..++
T Consensus 122 ~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 122 KDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred ECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 34455556653 2458888887654322 1211 11122222233566 67777654 2457777543
No 456
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.75 E-value=14 Score=30.16 Aligned_cols=123 Identities=9% Similarity=-0.019 Sum_probs=66.0
Q ss_pred eeeecCccCC--eEEEEee-CCEEEEEec--C-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe-EEEEecCCe
Q 013717 91 NSVQLGHKLP--IGCIAVH-HNFLYAASS--H-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK-IFTAHQDCK 163 (437)
Q Consensus 91 ~~~~~~h~~~--V~~l~~~-~~~l~s~~~--d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~ 163 (437)
.+....|... -..+.+. |.++.+.+. . .|++||+.+++......+....-... .+.-..+. ..-.=.+|.
T Consensus 36 vi~~yphDs~sfTQGL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgE---Git~~gd~~y~LTw~egv 112 (262)
T COG3823 36 VIRTYPHDSTSFTQGLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGE---GITKLGDYFYQLTWKEGV 112 (262)
T ss_pred EEEeccCchhhhhcceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCCcccccc---ceeeccceEEEEEeccce
Confidence 3344445432 2345555 666666653 2 99999999875544444421000111 12222333 223335677
Q ss_pred EEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCCCeEEEEECCCcEEEEECCCcc
Q 013717 164 IRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNNGLIYSVSWDKSLKIWRASDLR 243 (437)
Q Consensus 164 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 243 (437)
-..+|.++-+...... ..+.=+.++.+...|+.+....+++.-|.++..
T Consensus 113 af~~d~~t~~~lg~~~-------------------------------y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa 161 (262)
T COG3823 113 AFKYDADTLEELGRFS-------------------------------YEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFA 161 (262)
T ss_pred eEEEChHHhhhhcccc-------------------------------cCCcceeeecCCcceEeeCCceEEEecCHHHhh
Confidence 7788887765443332 344556677766556666666677777776654
Q ss_pred eEEE
Q 013717 244 CLES 247 (437)
Q Consensus 244 ~~~~ 247 (437)
...+
T Consensus 162 ~~~~ 165 (262)
T COG3823 162 ELDT 165 (262)
T ss_pred hcce
Confidence 4433
No 457
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=87.72 E-value=27 Score=33.58 Aligned_cols=232 Identities=9% Similarity=0.124 Sum_probs=105.6
Q ss_pred cccccccCCCceeEEecCCCcce--eeeecCc-cCCeEEEEee-CC--EEEEEecC---eEEEEeCCCCceeeeeccccC
Q 013717 68 VPSLQKLSPDETINFSSASHLCI--NSVQLGH-KLPIGCIAVH-HN--FLYAASSH---EINVYDRTGTTWTSINTFNDN 138 (437)
Q Consensus 68 ~~~~~s~s~dg~i~~~~~~~~~~--~~~~~~h-~~~V~~l~~~-~~--~l~s~~~d---~v~vwd~~~~~~~~~~~~~~~ 138 (437)
...+.-...+|.+.+........ .+..++. .....++.+- .. +|+.|+.. .+.-|. ....+.+..+
T Consensus 222 ~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~--~~~l~~~~~~--- 296 (504)
T PF10433_consen 222 GDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQIS--LSNLEVLDSL--- 296 (504)
T ss_dssp SSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEE--SESEEEEEEE---
T ss_pred CCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEe--CCCcEEEEec---
Confidence 33445466788888777755442 2333355 6667777777 55 88888855 444455 4336666665
Q ss_pred CCCcccEEEEEEeCC------------eEEEEe---cCCeEEEEeCCCCcc--cccccccCccccceeeecCC---CCee
Q 013717 139 DSSSGSVKSVTFCDG------------KIFTAH---QDCKIRVWQLTPTKH--HKLKTTLPTVNDRLLRFMLP---NSYV 198 (437)
Q Consensus 139 ~~h~~~v~~l~~~~~------------~l~s~~---~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~ 198 (437)
..-++|..++..+. .+++++ .+|.+++..-.-+-. ......++. ....+.+-.. +.++
T Consensus 297 -~N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~l 374 (504)
T PF10433_consen 297 -PNWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPG-VTGIWTLKLSSSDHSYL 374 (504)
T ss_dssp -----SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSEE
T ss_pred -cCcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCC-ceEEEEeeecCCCceEE
Confidence 35678888888521 556554 578888875422211 111111111 1111111111 2333
Q ss_pred EEeeccceeeec-----CCCcEEEEE---e--CCCeEEEEEC---------CCcEEEEECCCcceEEEeecc-cccEEEE
Q 013717 199 TVRRHKKKLWIE-----HGDAVTGLA---V--NNGLIYSVSW---------DKSLKIWRASDLRCLESIKAH-EDAVNAV 258 (437)
Q Consensus 199 ~~~~~~~~~~~~-----~~~~v~~~~---~--~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~-~~~v~~~ 258 (437)
.+.......+.. ..+++..+. | +...|+++.- ...|++.+...++....+... ...|.+.
T Consensus 375 v~S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I~~a 454 (504)
T PF10433_consen 375 VLSFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVGDGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSIIVAA 454 (504)
T ss_dssp EEEESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEETTTEEEEEESSEEEEEESSSTSEEEEEE-TTS---SEE
T ss_pred EEEcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcCCCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeEEEE
Confidence 333222211111 122222221 1 1133333332 234788887777777766533 3344444
Q ss_pred EEecCCeEEEEeCCCeEEEecCCCCcccceeeEEe-eCccccEEEEEEcc
Q 013717 259 AVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATL-EKHKSAVNALALSD 307 (437)
Q Consensus 259 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~i~~~~~~~ 307 (437)
+. .++.++.+..++.+.++.+............. ......|.|+...|
T Consensus 455 ~~-~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 455 SI-NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp EE-SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred EE-CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 44 35567777778888888775433211111000 01456777777665
No 458
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=87.65 E-value=14 Score=34.49 Aligned_cols=139 Identities=13% Similarity=0.168 Sum_probs=80.2
Q ss_pred EEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCC--------CEEEEEeCCCcEEEEECCCCccceEEeee
Q 013717 267 YTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDG--------TVLFSGACDRSILVWDREDSANHMVVTGA 338 (437)
Q Consensus 267 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 338 (437)
..|.....++--|+..+ +.+..+.-|... -+.|.|+. +.| +|-.+..|.-.|.+-..........
T Consensus 484 ~dg~~~~kLykmDIErG----kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtl-vGlS~~svFrIDPR~~gNKi~v~es 556 (776)
T COG5167 484 LDGGERDKLYKMDIERG----KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTL-VGLSDYSVFRIDPRARGNKIKVVES 556 (776)
T ss_pred ecCCCcccceeeecccc----eeeeEeecCCcc--eeecCCchhHHhcCccceE-EeecccceEEecccccCCceeeeee
Confidence 34444455555554433 466666655544 56777742 234 4545666666677654433332221
Q ss_pred --ecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEE
Q 013717 339 --LRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIR 416 (437)
Q Consensus 339 --~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~ 416 (437)
+.+...--........++|+++..|-|++||.-... ....+.+-...|..|....++.. +|+||- ..+.
T Consensus 557 KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~r---AKtalP~lG~aIk~idvta~Gk~----ilaTCk--~yll 627 (776)
T COG5167 557 KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKR---AKTALPGLGDAIKHIDVTANGKH----ILATCK--NYLL 627 (776)
T ss_pred hhccccccccccccccCceEEEecCCCceeeehhhcch---hhhcCcccccceeeeEeecCCcE----EEEeec--ceEE
Confidence 111111112223334599999999999999976433 34456667788999999998863 555552 4677
Q ss_pred EEeec
Q 013717 417 AWQVS 421 (437)
Q Consensus 417 iw~~~ 421 (437)
+-|+.
T Consensus 628 L~d~~ 632 (776)
T COG5167 628 LTDVP 632 (776)
T ss_pred EEecc
Confidence 77754
No 459
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=87.64 E-value=3.8 Score=37.30 Aligned_cols=166 Identities=15% Similarity=0.169 Sum_probs=96.3
Q ss_pred eecccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccceeeEEeeCccc----cEE-EEEEccCCCEEEEEeCCCcE
Q 013717 248 IKAHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRHALIATLEKHKS----AVN-ALALSDDGTVLFSGACDRSI 321 (437)
Q Consensus 248 ~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~----~i~-~~~~~~~~~~l~~~~~dg~i 321 (437)
+......|..+-..|||+ +..-+ ...+.++++....-..+.+ .....+ .|+ .+..-..|.-+++++.||.|
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~-g~~~~v~~L~~r~l~~rkl--~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~v 292 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRT-GSELVVALLDKRSLQIRKL--VDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLV 292 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEec-CCeEEEEeecccccchhhh--hhcCCCchHHHHHHHHHHHhCceeEEEEcCCCce
Confidence 444456677888899999 44433 3788999876433222111 111111 122 12223356778889999998
Q ss_pred EEE-ECCCCc-cceEEeeeecccccceEEEEeeCC--EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEcc
Q 013717 322 LVW-DREDSA-NHMVVTGALRGHGKAILCLINVAG--LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTE 397 (437)
Q Consensus 322 ~i~-d~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 397 (437)
.-| |.+.+. ........+.-....+..+.+..+ -+++-...|++.++.....+ .+- ...--..+.-++++|.
T Consensus 293 sQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~---~lL-~~~~~~~~~~~~~Sp~ 368 (733)
T COG4590 293 SQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEK---LLL-FERAYQAPQLVAMSPN 368 (733)
T ss_pred eeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCc---cee-hhhhhcCcceeeeCcc
Confidence 876 555432 222233333333344555555433 67778888999888766543 111 1112236677889998
Q ss_pred CCCCceEEEEEecCCCcEEEEeeccCCCC
Q 013717 398 EGQNGVVSVFSGSLDGEIRAWQVSVSCPN 426 (437)
Q Consensus 398 ~~~~~~~~l~s~~~dg~i~iw~~~~~~~~ 426 (437)
.+ ++++- +.|.|+++.++...|.
T Consensus 369 ~~-----~Ll~e-~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 369 QA-----YLLSE-DQGKIRLAQLENRNPE 391 (733)
T ss_pred cc-----hheee-cCCceEEEEecCCCCC
Confidence 85 45544 4678999999887664
No 460
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=87.55 E-value=10 Score=28.43 Aligned_cols=109 Identities=12% Similarity=0.178 Sum_probs=60.6
Q ss_pred EEecCCe-EEEEeCCCeEEEecCCCCcc----cceeeEEeeCccccEEEEEEcc-----CCCEEEEEeCCCcEEEEECCC
Q 013717 259 AVSAGGT-VYTGSADRKIRVWAKPFNEK----RHALIATLEKHKSAVNALALSD-----DGTVLFSGACDRSILVWDRED 328 (437)
Q Consensus 259 ~~~~~~~-l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~i~i~d~~~ 328 (437)
.|..... |++++.-|+|.|++...... ....+..+. -...|++++-.+ +...|+.|+ ...+..||+..
T Consensus 5 kfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN 82 (136)
T ss_pred EeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence 4444444 88888999999997653221 112233333 455677776544 234677775 45699999987
Q ss_pred CccceEEeeeecccccceEEEEe-----eCCEEEEEeCCCcEEEeeCCCCC
Q 013717 329 SANHMVVTGALRGHGKAILCLIN-----VAGLLMSGSADRTVRIWQRGSDG 374 (437)
Q Consensus 329 ~~~~~~~~~~~~~~~~~i~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~ 374 (437)
....+.. . -...+.++.+ .+.-++..+.+..|.-||....+
T Consensus 83 N~d~Fyk--e---~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 83 NSDLFYK--E---VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred Cchhhhh--h---CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 6543321 1 2233444433 12344444455667777766543
No 461
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=87.46 E-value=2 Score=21.88 Aligned_cols=26 Identities=12% Similarity=0.294 Sum_probs=22.8
Q ss_pred CcEEEEEeCCCeEEEEECCCcEEEEE
Q 013717 213 DAVTGLAVNNGLIYSVSWDKSLKIWR 238 (437)
Q Consensus 213 ~~v~~~~~~~~~l~~~~~dg~i~iwd 238 (437)
..|.+++..+++++.+...+.+|+|.
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEecC
Confidence 36889999999999999999999973
No 462
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=87.45 E-value=24 Score=32.60 Aligned_cols=151 Identities=11% Similarity=0.087 Sum_probs=82.7
Q ss_pred EEEEEEecCCeEEEEeCCCeEE-EecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccce
Q 013717 255 VNAVAVSAGGTVYTGSADRKIR-VWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHM 333 (437)
Q Consensus 255 v~~~~~~~~~~l~~~~~dg~v~-iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 333 (437)
...+...+++.++..+..|.+. -||- +...++.+. ......+..+.+.+++..++++ .+|.+.. ....+....
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~--~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~ 314 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHN--RASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEE 314 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEec--CCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCccc
Confidence 4455667787755555555443 3432 111112222 2335678999999999887766 5565543 333332110
Q ss_pred --EEeee-ecccccceEEEEeeCC-EEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEe
Q 013717 334 --VVTGA-LRGHGKAILCLINVAG-LLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSG 409 (437)
Q Consensus 334 --~~~~~-~~~~~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~ 409 (437)
.+... .......+..+.+.++ .++.++..|.+.... ..++.+.....-..-....+.+.|.+++ ..+..
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~------~g~~~ 387 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDK------KGFVL 387 (398)
T ss_pred ccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCC------ceEEE
Confidence 11111 1111234677766644 677777888766654 4455454443223334568899887765 36667
Q ss_pred cCCCcEEEE
Q 013717 410 SLDGEIRAW 418 (437)
Q Consensus 410 ~~dg~i~iw 418 (437)
+.+|.|.-|
T Consensus 388 G~~G~il~~ 396 (398)
T PLN00033 388 GNDGVLLRY 396 (398)
T ss_pred eCCcEEEEe
Confidence 778887655
No 463
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=87.02 E-value=40 Score=34.73 Aligned_cols=134 Identities=10% Similarity=0.043 Sum_probs=73.8
Q ss_pred CCcEEEEECC-CcceEEEee--cccccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEcc
Q 013717 231 DKSLKIWRAS-DLRCLESIK--AHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSD 307 (437)
Q Consensus 231 dg~i~iwd~~-~~~~~~~~~--~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 307 (437)
+|.++.|++- .++.+.-+. .-.+.+.+ +.|....+.++....+++||+.......+. .++.-...|..+.+.
T Consensus 911 ~g~~ytyk~~~~g~~lellh~T~~~~~v~A--i~~f~~~~LagvG~~l~~YdlG~K~lLRk~--e~k~~p~~Is~iqt~- 985 (1205)
T KOG1898|consen 911 SGFVYTYKFVRNGDKLELLHKTEIPGPVGA--ICPFQGRVLAGVGRFLRLYDLGKKKLLRKC--ELKFIPNRISSIQTY- 985 (1205)
T ss_pred CCceEEEEEEecCceeeeeeccCCCccceE--EeccCCEEEEecccEEEEeeCChHHHHhhh--hhccCceEEEEEeec-
Confidence 4557777653 334333322 22344444 455554555566789999998543311111 222234567777765
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEE-eeCCEEEEEeCCCcEEEeeCC
Q 013717 308 DGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLI-NVAGLLMSGSADRTVRIWQRG 371 (437)
Q Consensus 308 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~l~~~~~dg~i~iwd~~ 371 (437)
+..+++|...-.+..+-.+...........- .-...++++. .+.+.+|.+..=|.+.+-.+.
T Consensus 986 -~~RI~VgD~qeSV~~~~y~~~~n~l~~fadD-~~pR~Vt~~~~lD~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 986 -GARIVVGDIQESVHFVRYRREDNQLIVFADD-PVPRHVTALELLDYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred -ceEEEEeeccceEEEEEEecCCCeEEEEeCC-CccceeeEEEEecCCceeeccccCcEEEEECC
Confidence 6688888887777776665544443332221 1223344444 345578877777777776554
No 464
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=86.70 E-value=16 Score=29.95 Aligned_cols=151 Identities=10% Similarity=0.106 Sum_probs=83.7
Q ss_pred EEEEeCC-CeEEEEECCCcEEEEECC--CcceEEEeecccccEEEEEEecCCe-EEEEeCC---C---eEEEe-cCCCCc
Q 013717 216 TGLAVNN-GLIYSVSWDKSLKIWRAS--DLRCLESIKAHEDAVNAVAVSAGGT-VYTGSAD---R---KIRVW-AKPFNE 284 (437)
Q Consensus 216 ~~~~~~~-~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d---g---~v~iw-d~~~~~ 284 (437)
..++..+ +.|+.+...+.|.+|++. ..+....+. .-+.|..+.++..|. +++--.+ . .+|+| +.+...
T Consensus 21 ~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~ 99 (215)
T PF14761_consen 21 TAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQK 99 (215)
T ss_pred ceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhc
Confidence 3444445 677676788899999987 344555665 447899999999888 6665332 2 56765 222110
Q ss_pred ccceeeE-Eee---------------------CccccEEEEEEcc-CCCEEEEEeCCCcEEEEECCCCccce---EEe--
Q 013717 285 KRHALIA-TLE---------------------KHKSAVNALALSD-DGTVLFSGACDRSILVWDREDSANHM---VVT-- 336 (437)
Q Consensus 285 ~~~~~~~-~~~---------------------~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~-- 336 (437)
....++. .+- ....++.+++-.| .|+++ .|+ ++++.+|.+....... .+.
T Consensus 100 ~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~Ll-Vg~-~~~l~lf~l~~~~~~~~~~~~lDF 177 (215)
T PF14761_consen 100 EENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLL-VGC-GNKLVLFTLKYQTIQSEKFSFLDF 177 (215)
T ss_pred ccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEE-EEc-CCEEEEEEEEEEEEecccccEEec
Confidence 0000110 111 1234667888888 45544 454 4678899875432100 000
Q ss_pred -eee-ccc-ccceEEEEeeCCEEEEEeCCCcEEEeeC
Q 013717 337 -GAL-RGH-GKAILCLINVAGLLMSGSADRTVRIWQR 370 (437)
Q Consensus 337 -~~~-~~~-~~~i~~~~~~~~~l~~~~~dg~i~iwd~ 370 (437)
..+ .-| ......+++.++++|..+.. .++++.+
T Consensus 178 e~~l~~~~~~~~p~~v~ic~~yiA~~s~~-ev~Vlkl 213 (215)
T PF14761_consen 178 ERSLIDHIDNFKPTQVAICEGYIAVMSDL-EVLVLKL 213 (215)
T ss_pred hhhhhheecCceEEEEEEEeeEEEEecCC-EEEEEEE
Confidence 000 011 22346677778888877654 4666654
No 465
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.66 E-value=13 Score=38.91 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=24.4
Q ss_pred cEEEEEeCC--CeEEEEECCCcEEEEECCCcceE
Q 013717 214 AVTGLAVNN--GLIYSVSWDKSLKIWRASDLRCL 245 (437)
Q Consensus 214 ~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~ 245 (437)
....++|++ ++++.+...|.|+++-...-+..
T Consensus 37 ~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~ 70 (993)
T KOG1983|consen 37 TPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFV 70 (993)
T ss_pred CCcceeeccccceEEEEEecccEEEecccceEEE
Confidence 445667777 99999999999999986554433
No 466
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=86.62 E-value=17 Score=30.18 Aligned_cols=98 Identities=11% Similarity=0.132 Sum_probs=62.6
Q ss_pred ccEEEEEEecCCe--EEEEeCCCeEEEecC--CCCcc-cceeeEEeeC----ccccEEEEEEccCCCEEEEEeCCCcEEE
Q 013717 253 DAVNAVAVSAGGT--VYTGSADRKIRVWAK--PFNEK-RHALIATLEK----HKSAVNALALSDDGTVLFSGACDRSILV 323 (437)
Q Consensus 253 ~~v~~~~~~~~~~--l~~~~~dg~v~iwd~--~~~~~-~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~dg~i~i 323 (437)
.--+.++|+.+.+ .++-+.+-.|.-||. .++.. ..+.+..++. ..-..-.++...+|++.++.-..++|..
T Consensus 158 ~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 158 GISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQK 237 (310)
T ss_pred cCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEE
Confidence 3445788887776 566677788877874 32221 1122222222 1112234555668999999989999999
Q ss_pred EECCCCccceEEeeeecccccceEEEEeeCC
Q 013717 324 WDREDSANHMVVTGALRGHGKAILCLINVAG 354 (437)
Q Consensus 324 ~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 354 (437)
+|..+++....+. -....+++++|-|.
T Consensus 238 ~dp~tGK~L~eik----lPt~qitsccFgGk 264 (310)
T KOG4499|consen 238 VDPTTGKILLEIK----LPTPQITSCCFGGK 264 (310)
T ss_pred ECCCCCcEEEEEE----cCCCceEEEEecCC
Confidence 9999998554443 33678899998876
No 467
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=86.57 E-value=26 Score=32.10 Aligned_cols=109 Identities=14% Similarity=0.173 Sum_probs=66.5
Q ss_pred CCeEEEEECCCcEEEEECCCcceEEEeecc--cccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCcc-c
Q 013717 222 NGLIYSVSWDKSLKIWRASDLRCLESIKAH--EDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHK-S 298 (437)
Q Consensus 222 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~ 298 (437)
...++.+..+|.|.-+|..+++.+...... ...+..-.+..+|+++.++.+|.+..+|.+++. ..-...... -
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~----~~W~~~~~~~~ 143 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWDGKLYALDASTGT----LVWSRNVGGSP 143 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecccceEEEEECCCCc----EEEEEecCCCe
Confidence 367777788999999999998876544322 123333344448889999999988888775444 333333222 1
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEE
Q 013717 299 AVNALALSDDGTVLFSGACDRSILVWDREDSANHMVV 335 (437)
Q Consensus 299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~ 335 (437)
.+..-..-.++ .+..++.++.+...|..+++..+..
T Consensus 144 ~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~ 179 (370)
T COG1520 144 YYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTY 179 (370)
T ss_pred EEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEE
Confidence 11111222233 3444446788888888877765553
No 468
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=86.24 E-value=27 Score=32.05 Aligned_cols=25 Identities=4% Similarity=-0.041 Sum_probs=14.3
Q ss_pred EeCCCeEEEEECC-----------CcEEEEECCCcc
Q 013717 219 AVNNGLIYSVSWD-----------KSLKIWRASDLR 243 (437)
Q Consensus 219 ~~~~~~l~~~~~d-----------g~i~iwd~~~~~ 243 (437)
.....+.+.|+.+ ..+..||..+.+
T Consensus 82 ~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~ 117 (376)
T PRK14131 82 FIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNS 117 (376)
T ss_pred EECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCE
Confidence 3444556666543 247778877654
No 469
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.16 E-value=6.7 Score=38.15 Aligned_cols=34 Identities=32% Similarity=0.525 Sum_probs=25.3
Q ss_pred ccEEEEEEcc----CCCEEEEEeCCCcEEEEECCCCcc
Q 013717 298 SAVNALALSD----DGTVLFSGACDRSILVWDREDSAN 331 (437)
Q Consensus 298 ~~i~~~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~ 331 (437)
.....++++. +..++++.+.|+++++||+.++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 3455566655 677999999999999999998875
No 470
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.03 E-value=40 Score=33.87 Aligned_cols=34 Identities=12% Similarity=0.227 Sum_probs=28.7
Q ss_pred cCCCcEEEEEeCC-----CeEEEEECCCcEEEEECCCcc
Q 013717 210 EHGDAVTGLAVNN-----GLIYSVSWDKSLKIWRASDLR 243 (437)
Q Consensus 210 ~~~~~v~~~~~~~-----~~l~~~~~dg~i~iwd~~~~~ 243 (437)
.+...|..+.|+| ..|+.-..|+++|+||+...+
T Consensus 144 ~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 144 NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 4567899999998 789999999999999997543
No 471
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=85.71 E-value=18 Score=29.65 Aligned_cols=139 Identities=12% Similarity=0.204 Sum_probs=74.6
Q ss_pred EEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC------cEEEE-ECCCC
Q 013717 257 AVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR------SILVW-DREDS 329 (437)
Q Consensus 257 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------~i~i~-d~~~~ 329 (437)
.+.-.+.+.|+.+...+.|.+|++. ....+.+..+. .-+.|..+.++..|+||++--.+. .+++| +++..
T Consensus 22 ~~c~~g~d~Lfva~~g~~Vev~~l~--~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~ 98 (215)
T PF14761_consen 22 AVCCGGPDALFVAASGCKVEVYDLE--QEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ 98 (215)
T ss_pred eeeccCCceEEEEcCCCEEEEEEcc--cCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhh
Confidence 3333333345555777889999997 33345555665 348899999999999999864432 44554 23221
Q ss_pred ccceEEeeeecccccceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEe
Q 013717 330 ANHMVVTGALRGHGKAILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSG 409 (437)
Q Consensus 330 ~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~ 409 (437)
. ....++ ++..-|. -++++..+.. +.+. .+-++. -..++.+++.+|..+. |+.|
T Consensus 99 ~----------~~~~~v-~vRiaG~-~v~~~~~~~~-------~~ql-eiiElP-l~~~p~ciaCC~~tG~-----LlVg 152 (215)
T PF14761_consen 99 K----------EENSPV-RVRIAGH-RVTPSFNESS-------KDQL-EIIELP-LSEPPLCIACCPVTGN-----LLVG 152 (215)
T ss_pred c----------ccCCcE-EEEEccc-ccccCCCCcc-------ccce-EEEEec-CCCCCCEEEecCCCCC-----EEEE
Confidence 0 001111 1110010 0111111111 1111 122222 2567889999998765 5555
Q ss_pred cCCCcEEEEeeccCCC
Q 013717 410 SLDGEIRAWQVSVSCP 425 (437)
Q Consensus 410 ~~dg~i~iw~~~~~~~ 425 (437)
+ ++.+.+|.+.....
T Consensus 153 ~-~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 153 C-GNKLVLFTLKYQTI 167 (215)
T ss_pred c-CCEEEEEEEEEEEE
Confidence 4 45899999877654
No 472
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=85.61 E-value=23 Score=30.76 Aligned_cols=118 Identities=9% Similarity=0.207 Sum_probs=65.1
Q ss_pred CCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEe------CCCcEEEEECCCCccceEEeeee-ccccc
Q 013717 272 DRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGA------CDRSILVWDREDSANHMVVTGAL-RGHGK 344 (437)
Q Consensus 272 dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~-~~~~~ 344 (437)
-..|++||....+ +. ..-.+-.+.|+.+.|..+.+++++|. ....+..||+.+.... .+.... ..-.+
T Consensus 15 C~~lC~yd~~~~q--W~--~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~~ipg 89 (281)
T PF12768_consen 15 CPGLCLYDTDNSQ--WS--SPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSNSIPG 89 (281)
T ss_pred CCEEEEEECCCCE--ee--cCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccccCCC
Confidence 4579999875432 22 22223567899999987777777764 3557888998765321 111101 11235
Q ss_pred ceEEEEee---CC-EEEEEe-CCCc--EEEeeCCCCCCeeeeee-ecCCCCCeeEEEEEcc
Q 013717 345 AILCLINV---AG-LLMSGS-ADRT--VRIWQRGSDGRFGCLAV-LEGHTKPVKSLTAVTE 397 (437)
Q Consensus 345 ~i~~~~~~---~~-~l~~~~-~dg~--i~iwd~~~~~~~~~~~~-~~~h~~~v~~l~~~~~ 397 (437)
++..+.+. .. +.+.|. .+|. |..||- ..|..+.. .......|..+.+.+-
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dG---s~W~~i~~~~~~~~t~I~~l~~~~l 147 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRSANGSTFLMKYDG---SSWSSIGSDILGSGTTIRGLQVLPL 147 (281)
T ss_pred cEEEEEeeccCCceEEEeceecCCCceEEEEcC---CceEeccccccCCCCEEEEEEEEec
Confidence 66666663 33 444444 3443 555643 33444444 2333456777777665
No 473
>PLN02193 nitrile-specifier protein
Probab=85.17 E-value=35 Score=32.44 Aligned_cols=154 Identities=7% Similarity=0.016 Sum_probs=72.4
Q ss_pred EeCCCeEEEEECC-----CcEEEEECCCcceEEEeec----ccccEEEEEEecCCe-EEEEeCCC-----eEEEecCCCC
Q 013717 219 AVNNGLIYSVSWD-----KSLKIWRASDLRCLESIKA----HEDAVNAVAVSAGGT-VYTGSADR-----KIRVWAKPFN 283 (437)
Q Consensus 219 ~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~----~~~~v~~~~~~~~~~-l~~~~~dg-----~v~iwd~~~~ 283 (437)
.+...+++.|+.+ ..+..||+.+.+-...-.. ....-.+++. -+++ ++.|+.++ .+..||+..+
T Consensus 226 ~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~ 304 (470)
T PLN02193 226 SIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDK 304 (470)
T ss_pred EECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCC
Confidence 3444566666654 3578889877543221110 1111122222 2455 66666543 4567776543
Q ss_pred cccceeeEEee---CccccEEEEEEccCCCEEEEEeCC----CcEEEEECCCCccceEEeeee---cccccceEEEEeeC
Q 013717 284 EKRHALIATLE---KHKSAVNALALSDDGTVLFSGACD----RSILVWDREDSANHMVVTGAL---RGHGKAILCLINVA 353 (437)
Q Consensus 284 ~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~---~~~~~~i~~~~~~~ 353 (437)
. +..+.... ...... .++. -+++.++.++.+ ..+.+||+.+.+- ...... ........+....+
T Consensus 305 ~--W~~~~~~~~~~~~R~~~-~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W--~~~~~~g~~P~~R~~~~~~~~~~ 378 (470)
T PLN02193 305 K--WFHCSTPGDSFSIRGGA-GLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKW--TQVETFGVRPSERSVFASAAVGK 378 (470)
T ss_pred E--EEeCCCCCCCCCCCCCc-EEEE-ECCcEEEEECCCCCccCceEEEECCCCEE--EEeccCCCCCCCcceeEEEEECC
Confidence 2 22221100 011111 1222 256777777655 4589999987542 222111 11111123334455
Q ss_pred CEEEEEeCC--------------CcEEEeeCCCCCCeeeee
Q 013717 354 GLLMSGSAD--------------RTVRIWQRGSDGRFGCLA 380 (437)
Q Consensus 354 ~~l~~~~~d--------------g~i~iwd~~~~~~~~~~~ 380 (437)
.+++.|+.. ..+.+||..+.. +..+.
T Consensus 379 ~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~-W~~~~ 418 (470)
T PLN02193 379 HIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQ-WERLD 418 (470)
T ss_pred EEEEECCccCCccccccCccceeccEEEEEcCcCE-EEEcc
Confidence 577777753 247888887654 44333
No 474
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=84.73 E-value=3.1 Score=21.21 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=21.7
Q ss_pred ceEEEEeeCCEEEEEeCCCcEEEee
Q 013717 345 AILCLINVAGLLMSGSADRTVRIWQ 369 (437)
Q Consensus 345 ~i~~~~~~~~~l~~~~~dg~i~iwd 369 (437)
.|.+++..+.+++++..-+.+|+|.
T Consensus 3 ~i~aia~g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGDSWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccCCEEEEEeCCCeEEecC
Confidence 5678888888999999999999984
No 475
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=84.05 E-value=6.5 Score=38.82 Aligned_cols=75 Identities=16% Similarity=0.310 Sum_probs=51.3
Q ss_pred CccCCeEEEEeeCCEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCeEEEEecC-CeEEEEeCCCC
Q 013717 96 GHKLPIGCIAVHHNFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGKIFTAHQD-CKIRVWQLTPT 172 (437)
Q Consensus 96 ~h~~~V~~l~~~~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~d-g~i~iwd~~~~ 172 (437)
--..+|.++++..+.+++..++.|.|+...+ ............|...|+++.+.++++..+-.. ..+++++.++-
T Consensus 624 ~g~lPvrsla~~ed~~was~gG~V~vi~~tt--~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~~~rlfhtetl 699 (925)
T KOG3522|consen 624 TGSLPVRSLAFQEDFVWASEGGCVHVIPSTT--FIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGDEERLFHTETL 699 (925)
T ss_pred cCCccccchhhhhceeeeecCCceEEEechh--ccccchhHHHHhhcceEEEEEeeCCceEEEEcCCCEEEEeccccc
Confidence 4457889999988888877777999999887 333333333356788999999998884443333 34555555443
No 476
>PRK13684 Ycf48-like protein; Provisional
Probab=83.35 E-value=34 Score=30.79 Aligned_cols=155 Identities=8% Similarity=0.016 Sum_probs=82.4
Q ss_pred CCcEEEEEeCC-CeEEEEECCCcEEEEECCCcceEEEe-ecccccEEEEEEecCCeEEEEeCCCeEEEecCCCCccccee
Q 013717 212 GDAVTGLAVNN-GLIYSVSWDKSLKIWRASDLRCLESI-KAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHAL 289 (437)
Q Consensus 212 ~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~ 289 (437)
...+.++.+.+ ..++..+..|.+..-.-..++.-..+ ......++++.+.+++.++..+..|.+++=..+ +...++.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d-~G~sW~~ 250 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPD-DLESWSK 250 (334)
T ss_pred cceEEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCC-CCCcccc
Confidence 34677888877 55666666676554211222212222 234567899999999986566677876542122 2223332
Q ss_pred eEEe-eCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEe-eCCEEEEEeCCCcEEE
Q 013717 290 IATL-EKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLIN-VAGLLMSGSADRTVRI 367 (437)
Q Consensus 290 ~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~~dg~i~i 367 (437)
...- ......+..+.+.+++..++++ .+|.+. .....++. +........-......+.+ +++..+..+..|.|--
T Consensus 251 ~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~t-W~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~ 327 (334)
T PRK13684 251 PIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKT-WEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLR 327 (334)
T ss_pred ccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCC-CeECCcCCCCCcceEEEEEeCCCceEEECCCceEEE
Confidence 2111 0122457889999987765554 667554 34444432 2221110111223444443 4556666778888877
Q ss_pred eeC
Q 013717 368 WQR 370 (437)
Q Consensus 368 wd~ 370 (437)
|+-
T Consensus 328 ~~~ 330 (334)
T PRK13684 328 YVG 330 (334)
T ss_pred ecC
Confidence 753
No 477
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=82.95 E-value=7.3 Score=37.90 Aligned_cols=70 Identities=17% Similarity=0.200 Sum_probs=40.0
Q ss_pred eCCEEEEEeCCCcEEEeeCCC----CCCeeee--------eeec-----------CCCCCeeEEEEEc---cCCCCceEE
Q 013717 352 VAGLLMSGSADRTVRIWQRGS----DGRFGCL--------AVLE-----------GHTKPVKSLTAVT---EEGQNGVVS 405 (437)
Q Consensus 352 ~~~~l~~~~~dg~i~iwd~~~----~~~~~~~--------~~~~-----------~h~~~v~~l~~~~---~~~~~~~~~ 405 (437)
++..++.+..||.+....... +..+... ..+. .....+..++... ++. .+
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 232 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDD----TF 232 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETT----TE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCC----CE
Confidence 566888888898888877664 1111110 0010 0123445555555 122 28
Q ss_pred EEEecCCCcEEEEeeccCCC
Q 013717 406 VFSGSLDGEIRAWQVSVSCP 425 (437)
Q Consensus 406 l~s~~~dg~i~iw~~~~~~~ 425 (437)
|++.+.|+++|+||+.+++.
T Consensus 233 l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 233 LFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EEEEETTSEEEEEETTTTCE
T ss_pred EEEEeCCCeEEEEECCCCeE
Confidence 99999999999999998875
No 478
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=82.80 E-value=36 Score=30.72 Aligned_cols=54 Identities=7% Similarity=0.023 Sum_probs=24.5
Q ss_pred CeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCC------CcEEEEECCCC
Q 013717 273 RKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACD------RSILVWDREDS 329 (437)
Q Consensus 273 g~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~ 329 (437)
..+.+||..++ .+..+..+......-.+++ ..++++.+.|+.+ ..+.+|++...
T Consensus 168 ~~v~~YDp~t~--~W~~~~~~p~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~ 227 (346)
T TIGR03547 168 KNVLSYDPSTN--QWRNLGENPFLGTAGSAIV-HKGNKLLLINGEIKPGLRTAEVKQYLFTGG 227 (346)
T ss_pred ceEEEEECCCC--ceeECccCCCCcCCCceEE-EECCEEEEEeeeeCCCccchheEEEEecCC
Confidence 45778877543 3333332221111112222 2356777777653 13455665433
No 479
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=82.76 E-value=38 Score=30.86 Aligned_cols=156 Identities=14% Similarity=0.171 Sum_probs=66.5
Q ss_pred cCCCcEEEEEeCC---CeEEEEEC---CCc-EEEEECCC-cceEEEeecc--cccEEEEEEecCCe-EEE-Ee-C---CC
Q 013717 210 EHGDAVTGLAVNN---GLIYSVSW---DKS-LKIWRASD-LRCLESIKAH--EDAVNAVAVSAGGT-VYT-GS-A---DR 273 (437)
Q Consensus 210 ~~~~~v~~~~~~~---~~l~~~~~---dg~-i~iwd~~~-~~~~~~~~~~--~~~v~~~~~~~~~~-l~~-~~-~---dg 273 (437)
.....+.-+.++| ..|+-|-+ +.. -|||-+.+ +.....+..+ ...+..=-|.|||. +.. +. . +.
T Consensus 185 ~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~ 264 (386)
T PF14583_consen 185 EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDF 264 (386)
T ss_dssp EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--E
T ss_pred ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCce
Confidence 3455666777877 55555533 221 25554432 2223333222 22333445788887 433 22 2 33
Q ss_pred eEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCC----------------cEEEEECCCCccceEEee
Q 013717 274 KIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDR----------------SILVWDREDSANHMVVTG 337 (437)
Q Consensus 274 ~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg----------------~i~i~d~~~~~~~~~~~~ 337 (437)
.|.-+|+.+... ..+... .....+--++||++++-=+.|. -|++++++.+.......+
T Consensus 265 ~i~~~d~~t~~~--~~~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h 338 (386)
T PF14583_consen 265 WIAGYDPDTGER--RRLMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARH 338 (386)
T ss_dssp EEEEE-TTT--E--EEEEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-
T ss_pred EEEeeCCCCCCc--eEEEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeec
Confidence 566666654432 112211 1234555678888776533332 466677766543221111
Q ss_pred e-----eccc---ccceEEEEeeCC-EEEEEeCCCcEEEeeCC
Q 013717 338 A-----LRGH---GKAILCLINVAG-LLMSGSADRTVRIWQRG 371 (437)
Q Consensus 338 ~-----~~~~---~~~i~~~~~~~~-~l~~~~~dg~i~iwd~~ 371 (437)
. ..++ ..+-.+++++++ .|+++...|...||-++
T Consensus 339 ~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 339 DTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp ------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred cCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 0 1111 123356666666 67777778887777544
No 480
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=82.58 E-value=4.9 Score=21.23 Aligned_cols=26 Identities=27% Similarity=0.178 Sum_probs=21.8
Q ss_pred CeEEEEECCCcEEEEECCCcceEEEe
Q 013717 223 GLIYSVSWDKSLKIWRASDLRCLESI 248 (437)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~~~~~~ 248 (437)
..++.++.+|.+..+|.++++.+..+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 57888899999999999999877653
No 481
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.49 E-value=44 Score=31.51 Aligned_cols=76 Identities=13% Similarity=0.080 Sum_probs=47.6
Q ss_pred cEEEEEEccCCCEEEEEeCCCcEEEEEC---------CCCccceEEeee-----e--cccccceEEEEeeCC-----EEE
Q 013717 299 AVNALALSDDGTVLFSGACDRSILVWDR---------EDSANHMVVTGA-----L--RGHGKAILCLINVAG-----LLM 357 (437)
Q Consensus 299 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~---------~~~~~~~~~~~~-----~--~~~~~~i~~~~~~~~-----~l~ 357 (437)
.|..+..++.|..++-.+.+|.+.++=. ++++....+... + ....-.+...+|++. .|.
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 4678889999999999999996655431 223222211110 0 011223344556654 788
Q ss_pred EEeCCCcEEEeeCCCCC
Q 013717 358 SGSADRTVRIWQRGSDG 374 (437)
Q Consensus 358 ~~~~dg~i~iwd~~~~~ 374 (437)
.-+.|..||+||+....
T Consensus 185 iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEecCcEEEEEecCCcc
Confidence 88899999999998755
No 482
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=82.34 E-value=33 Score=29.89 Aligned_cols=51 Identities=14% Similarity=0.457 Sum_probs=38.1
Q ss_pred eEEEEeCCCCceeeeeccccCCCCcccEEEEEEe-CCeEEEEe-------cCCeEEEEeCCCCc
Q 013717 118 EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFC-DGKIFTAH-------QDCKIRVWQLTPTK 173 (437)
Q Consensus 118 ~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~-------~dg~i~iwd~~~~~ 173 (437)
.|++||..+.+|..... +-.+.|..|.|. .+.|+.++ ....+..||..+..
T Consensus 17 ~lC~yd~~~~qW~~~g~-----~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGN-----GISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred EEEEEECCCCEeecCCC-----CceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence 89999999987876654 467899999997 55544443 35578889888664
No 483
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.06 E-value=39 Score=34.49 Aligned_cols=83 Identities=10% Similarity=0.102 Sum_probs=48.5
Q ss_pred ccEE-EEEEeCCeEEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeC
Q 013717 143 GSVK-SVTFCDGKIFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVN 221 (437)
Q Consensus 143 ~~v~-~l~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 221 (437)
..|. |++-.++.+..|+.+|.+.+|.+............... ...... -+..+|..+...
T Consensus 16 ~~vd~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~-----------------~~~~~~--~~kk~i~~l~~~ 76 (877)
T KOG2063|consen 16 LEVDLCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTET-----------------VKFEKE--FSKKPINKLLVC 76 (877)
T ss_pred CccchHHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcch-----------------hHHhhh--hccchhHHHhhc
Confidence 3444 66666788999999999999998765432222110000 000000 124566666666
Q ss_pred C-CeEEEEECCCcEEEEECCCcce
Q 013717 222 N-GLIYSVSWDKSLKIWRASDLRC 244 (437)
Q Consensus 222 ~-~~l~~~~~dg~i~iwd~~~~~~ 244 (437)
+ ..++..-.|+.|.++++.+.+.
T Consensus 77 ~~~~~ll~l~dsqi~~~~l~~~~~ 100 (877)
T KOG2063|consen 77 ASLELLLILSDSQIAVHKLPELEP 100 (877)
T ss_pred chhcchheecCCcceeeecCcccc
Confidence 5 3344445677888888877655
No 484
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=81.74 E-value=44 Score=30.98 Aligned_cols=75 Identities=16% Similarity=0.189 Sum_probs=44.7
Q ss_pred EEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCC--------------CceEEEEEecCCC
Q 013717 348 CLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQ--------------NGVVSVFSGSLDG 413 (437)
Q Consensus 348 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~--------------~~~~~l~s~~~dg 413 (437)
++++.+.+.++...=|.|.++|+..+. .++.++|-.+.=-.-....+... ....+++-+-.-|
T Consensus 314 ~~sP~~~laA~tDslGRV~LiD~~~~~---vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprRg 390 (415)
T PF14655_consen 314 CLSPSGRLAAVTDSLGRVLLIDVARGI---VVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRRG 390 (415)
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCh---hhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccCC
Confidence 344445577777777999999999866 55555554432111111111110 1123556667789
Q ss_pred cEEEEeeccCCC
Q 013717 414 EIRAWQVSVSCP 425 (437)
Q Consensus 414 ~i~iw~~~~~~~ 425 (437)
.|.||.++.+..
T Consensus 391 ~lEvW~~~~g~R 402 (415)
T PF14655_consen 391 ILEVWSMRQGPR 402 (415)
T ss_pred eEEEEecCCCCE
Confidence 999999998754
No 485
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=81.69 E-value=37 Score=30.03 Aligned_cols=58 Identities=10% Similarity=0.133 Sum_probs=37.7
Q ss_pred CEEEEEecCeEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe---EEEEecCCeEEEEeCCC
Q 013717 109 NFLYAASSHEINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK---IFTAHQDCKIRVWQLTP 171 (437)
Q Consensus 109 ~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iwd~~~ 171 (437)
++|+.|.++-+.+-++........+. .+...|.++...+.. ++-++....++.+++..
T Consensus 14 ~~lL~GTe~Gly~~~~~~~~~~~~kl-----~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~ 74 (302)
T smart00036 14 KWLLVGTEEGLYVLNISDQPGTLEKL-----IGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSA 74 (302)
T ss_pred cEEEEEeCCceEEEEcccCCCCeEEe-----cCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHH
Confidence 58888888877777765421122222 267789999998654 33444445599999853
No 486
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=81.24 E-value=77 Score=33.41 Aligned_cols=185 Identities=15% Similarity=0.198 Sum_probs=102.4
Q ss_pred CCCcEEEEECCCcceEEEee-cccccEEEEEEe-------cCC-e--EEEEeC---------CCeEEEecCCC----Cc-
Q 013717 230 WDKSLKIWRASDLRCLESIK-AHEDAVNAVAVS-------AGG-T--VYTGSA---------DRKIRVWAKPF----NE- 284 (437)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~-------~~~-~--l~~~~~---------dg~v~iwd~~~----~~- 284 (437)
....|.+.+..+++.+..+. .....|.+++.. ..+ + +++|.. -|.+++||+-. ..
T Consensus 1002 ~~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgk 1081 (1366)
T KOG1896|consen 1002 EQFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGK 1081 (1366)
T ss_pred ccceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCC
Confidence 34456666666666554443 122334555442 122 2 666643 48899998632 11
Q ss_pred --ccceeeEE-eeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCccceEEeeeecccccceEEEEeeCCEEEEEeC
Q 013717 285 --KRHALIAT-LEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSANHMVVTGALRGHGKAILCLINVAGLLMSGSA 361 (437)
Q Consensus 285 --~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~ 361 (437)
...+.... .+..+++|..++=- +| +|+++ ...+|.||+++......-.. +-.-..-+.++..-.++|+.|.-
T Consensus 1082 P~t~~KlKel~~eE~KGtVsavceV-~G-~l~~~-~GqKI~v~~l~r~~~ligVa--FiD~~~yv~s~~~vknlIl~gDV 1156 (1366)
T KOG1896|consen 1082 PFTKNKLKELYIEEQKGTVSAVCEV-RG-HLLSS-QGQKIIVRKLDRDSELIGVA--FIDLPLYVHSMKVVKNLILAGDV 1156 (1366)
T ss_pred CcccceeeeeehhhcccceEEEEEe-cc-EEEEc-cCcEEEEEEeccCCcceeeE--EeccceeEEehhhhhhheehhhh
Confidence 11111111 12345677766633 45 45544 34579999994332221111 11223334445555678888887
Q ss_pred CCcEEEeeCCCCCCeeeeeeec--CCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeeccCC
Q 013717 362 DRTVRIWQRGSDGRFGCLAVLE--GHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSVSC 424 (437)
Q Consensus 362 dg~i~iwd~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~~~ 424 (437)
-..|.+....... ..+..+. ...-.+.++.|.-++++ .+++.+..|+.|++|-.....
T Consensus 1157 ~ksisfl~fqeep--~rlsL~srd~~~l~v~s~EFLVdg~~---L~flvsDa~rNi~vy~Y~Pe~ 1216 (1366)
T KOG1896|consen 1157 MKSISFLGFQEEP--YRLSLLSRDFEPLNVYSTEFLVDGSN---LSFLVSDADRNIHVYMYAPEN 1216 (1366)
T ss_pred hhceEEEEEccCc--eEEEEeecCCchhhceeeeeEEcCCe---eEEEEEcCCCcEEEEEeCCCC
Confidence 7778777665433 1222222 12336888899888866 789999999999998765543
No 487
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=80.98 E-value=5.2 Score=22.26 Aligned_cols=26 Identities=19% Similarity=0.077 Sum_probs=23.0
Q ss_pred eEEEEECCCcEEEEECCCcceEEEee
Q 013717 224 LIYSVSWDKSLKIWRASDLRCLESIK 249 (437)
Q Consensus 224 ~l~~~~~dg~i~iwd~~~~~~~~~~~ 249 (437)
.++.++.+|.|.-+|.++|+.+..++
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeee
Confidence 46777999999999999999998886
No 488
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=80.69 E-value=39 Score=29.63 Aligned_cols=186 Identities=12% Similarity=0.174 Sum_probs=96.1
Q ss_pred eEEEEeCCCCceeeeeccccCCC-CcccEEEEEEeC--C----e--EEEEecCCeEEEEeCCCCcccccccccCccccce
Q 013717 118 EINVYDRTGTTWTSINTFNDNDS-SSGSVKSVTFCD--G----K--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRL 188 (437)
Q Consensus 118 ~v~vwd~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~--~----~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 188 (437)
.|.+||+.+++......+..... ..+.+..+.+.. + . .++=+..+-|.++|+.+++..+............
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 78889999976555555543222 356788888873 1 3 4555566789999999998766655422211111
Q ss_pred eeecCCCCeeEEeeccceeeecCCCcEEEEEeCC-----CeEEEEECCCcEEEEECCC-----c---------ceEEEee
Q 013717 189 LRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN-----GLIYSVSWDKSLKIWRASD-----L---------RCLESIK 249 (437)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~~~~~dg~i~iwd~~~-----~---------~~~~~~~ 249 (437)
...... ...+. ....+..++..+ +.|+-..-.+. ++|.+.+ . +.++.+-
T Consensus 115 ---------~~~~i~-g~~~~-~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG 182 (287)
T PF03022_consen 115 ---------GPFTIG-GESFQ-WPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLG 182 (287)
T ss_dssp ---------EEEEET-TEEEE-ETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEE
T ss_pred ---------cceecc-CceEe-cCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceecc
Confidence 111111 11121 223377787765 35555554331 2333221 1 1112221
Q ss_pred cccccEEEEEEecCCe-EEEEeCCCeEEEecCCCCcccc--eeeEEeeCccccEEEEEEcc--CCCEEEEE
Q 013717 250 AHEDAVNAVAVSAGGT-VYTGSADRKIRVWAKPFNEKRH--ALIATLEKHKSAVNALALSD--DGTVLFSG 315 (437)
Q Consensus 250 ~~~~~v~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~~~i~~~~~~~--~~~~l~~~ 315 (437)
........++++++|. +++--..+.|..|+........ ..+..-...-..+..+.+.+ +|.+.+..
T Consensus 183 ~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 183 DKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp E---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred ccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 1123566788889998 6667778899999876532221 22222121235678888888 66554444
No 489
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=80.42 E-value=51 Score=30.84 Aligned_cols=29 Identities=21% Similarity=0.461 Sum_probs=21.6
Q ss_pred ceEEEEeeCC--EEEEEeCCCcEEEeeCCCC
Q 013717 345 AILCLINVAG--LLMSGSADRTVRIWQRGSD 373 (437)
Q Consensus 345 ~i~~~~~~~~--~l~~~~~dg~i~iwd~~~~ 373 (437)
.|..+..++. .+++.+.+|.|.+|++..+
T Consensus 191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp -EEEEEEETTTTEEEEEESSE-EEEEEE-SS
T ss_pred ceeeEEecCCcCEEEEEeCCCcEEEEEEeCC
Confidence 3777777654 9999999999999999863
No 490
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=80.31 E-value=8 Score=21.49 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=0.0
Q ss_pred eEEeeCccccEEEEEEccCCCEEEEEeCC---CcEEEE
Q 013717 290 IATLEKHKSAVNALALSDDGTVLFSGACD---RSILVW 324 (437)
Q Consensus 290 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~ 324 (437)
+..+......-....|+|||++|+-.+.. |.-.||
T Consensus 1 l~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 1 LKQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
No 491
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.52 E-value=88 Score=33.04 Aligned_cols=71 Identities=17% Similarity=0.092 Sum_probs=43.4
Q ss_pred cccEEEEEEecCCeEEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCcc
Q 013717 252 EDAVNAVAVSAGGTVYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSAN 331 (437)
Q Consensus 252 ~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 331 (437)
..++.+..+.....++.+...+.+.+|+..... .. +.-.+......+++..++++..||.+..||...++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~~~~~~~~~~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 198 EYESLQVLYYSPTKILIGFNRGLVVIKDRASKY----VQ-----SAYLPNGQLESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccccceeeeecCCCcceeeeeeeeeehhccccc----ch-----hhcccccccCccCCceEEEEEecCCEEeeecCCCce
Confidence 344555555444456666666777777543221 11 111112122278899999999999999999988643
No 492
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=79.39 E-value=21 Score=30.33 Aligned_cols=69 Identities=12% Similarity=0.065 Sum_probs=49.5
Q ss_pred cCCCcEEEEEeCC---------CeEEEEECCCcEEEEECCCcceEEEeecccccEEEE---EEe-cCCeEEEEeCCCeEE
Q 013717 210 EHGDAVTGLAVNN---------GLIYSVSWDKSLKIWRASDLRCLESIKAHEDAVNAV---AVS-AGGTVYTGSADRKIR 276 (437)
Q Consensus 210 ~~~~~v~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~---~~~-~~~~l~~~~~dg~v~ 276 (437)
.+...|+|++--. ..++.|.++|.|.|.|.+....+..+.-..-++.-. .|. -|.++++++.||.|.
T Consensus 174 ~~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy 253 (257)
T PF14779_consen 174 KRQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIY 253 (257)
T ss_pred ccCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEE
Confidence 3556788886521 789999999999999999888887776444433211 233 355599999999987
Q ss_pred Ee
Q 013717 277 VW 278 (437)
Q Consensus 277 iw 278 (437)
+.
T Consensus 254 ~i 255 (257)
T PF14779_consen 254 TI 255 (257)
T ss_pred EE
Confidence 64
No 493
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=79.06 E-value=38 Score=33.40 Aligned_cols=106 Identities=14% Similarity=0.238 Sum_probs=60.7
Q ss_pred cccEEEEEEeCCe--EEEEecCCeEEEEeCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEE
Q 013717 142 SGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLA 219 (437)
Q Consensus 142 ~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 219 (437)
...++++.-.|++ ++.+..||.|++|+.......+... ...+-..+.
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~-------------------------------~~~p~~nlv 62 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICE-------------------------------EAKPKENLV 62 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhh-------------------------------hcCCcccee
Confidence 3456677777776 9999999999999987654322211 112333455
Q ss_pred eCCCeEEEEECCCcEEEEECCCcceEEEee---cccccEEEEEEecCCeEEEEeCCCeEEEec
Q 013717 220 VNNGLIYSVSWDKSLKIWRASDLRCLESIK---AHEDAVNAVAVSAGGTVYTGSADRKIRVWA 279 (437)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd 279 (437)
|.+.-++++..|..+.-|.- .|-..+.+. .......++...|...-++|..-|-|.-+|
T Consensus 63 ~tnhgl~~~tsdrr~la~~~-dgvvqqqfdyndqsekefss~~cdptaqnvvgtlcggv~q~d 124 (1636)
T KOG3616|consen 63 FTNHGLVTATSDRRALAWKE-DGVVQQQFDYNDQSEKEFSSILCDPTAQNVVGTLCGGVEQFD 124 (1636)
T ss_pred eeccceEEEeccchhheeec-cCcchhhccccchhhhhccceecCchhhhhhhhhccceeeeh
Confidence 55556777777877777753 333333332 122334455555555444455445555554
No 494
>PRK10115 protease 2; Provisional
Probab=78.59 E-value=78 Score=31.91 Aligned_cols=193 Identities=9% Similarity=0.059 Sum_probs=97.6
Q ss_pred cEEEEEeCC--CeEEEEE-C----CCcEEEEECCCcceEEEeecccccEEEEEEecCCe-EEEEeCC------CeEEEec
Q 013717 214 AVTGLAVNN--GLIYSVS-W----DKSLKIWRASDLRCLESIKAHEDAVNAVAVSAGGT-VYTGSAD------RKIRVWA 279 (437)
Q Consensus 214 ~v~~~~~~~--~~l~~~~-~----dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~d------g~v~iwd 279 (437)
.+..+.++| ++|+.+. . .-.|++.|+.+++.+...-... -..++|.+|+. |+....+ ..|..++
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~ 205 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRHT 205 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence 355667777 5555442 2 2358899998886432221111 14589999987 5554432 3577777
Q ss_pred CCCCcccceeeEEeeCccccEE-EEEEccCCCEEEEEeC---CCcEEEEECCCCccc-eEEeeeecccccceEEEEeeCC
Q 013717 280 KPFNEKRHALIATLEKHKSAVN-ALALSDDGTVLFSGAC---DRSILVWDREDSANH-MVVTGALRGHGKAILCLINVAG 354 (437)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~ 354 (437)
+.++...-.++.. ....... .+..+.++++++..+. ++.+.+++....... ..+... . ......+...++
T Consensus 206 lgt~~~~d~lv~~--e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~ 280 (686)
T PRK10115 206 IGTPASQDELVYE--EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPR--R-KDHEYSLDHYQH 280 (686)
T ss_pred CCCChhHCeEEEe--eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEEC--C-CCCEEEEEeCCC
Confidence 7655333334333 2222222 3344558887665443 457888885332111 111111 1 112222322234
Q ss_pred EEEEEeC--CCcEEEe--eCCCCCCeeeeeeecCC-C-CCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717 355 LLMSGSA--DRTVRIW--QRGSDGRFGCLAVLEGH-T-KPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 355 ~l~~~~~--dg~i~iw--d~~~~~~~~~~~~~~~h-~-~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
.+..-+. ....+|. ++.... ....+..+ . ..|..+.+..+ .++++...+|.-+++-++.
T Consensus 281 ~ly~~tn~~~~~~~l~~~~~~~~~---~~~~l~~~~~~~~i~~~~~~~~------~l~~~~~~~g~~~l~~~~~ 345 (686)
T PRK10115 281 RFYLRSNRHGKNFGLYRTRVRDEQ---QWEELIPPRENIMLEGFTLFTD------WLVVEERQRGLTSLRQINR 345 (686)
T ss_pred EEEEEEcCCCCCceEEEecCCCcc---cCeEEECCCCCCEEEEEEEECC------EEEEEEEeCCEEEEEEEcC
Confidence 2222222 2233344 444222 12333344 3 36888888744 3788888888877776653
No 495
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.97 E-value=88 Score=32.16 Aligned_cols=75 Identities=16% Similarity=0.315 Sum_probs=47.0
Q ss_pred CeE-EEEeeCCEEEEEecC-eEEEEeCCCCceeeeecc----c--cCCCCcccEEEEEEeCCe-EEEEecCCeEEEEeCC
Q 013717 100 PIG-CIAVHHNFLYAASSH-EINVYDRTGTTWTSINTF----N--DNDSSSGSVKSVTFCDGK-IFTAHQDCKIRVWQLT 170 (437)
Q Consensus 100 ~V~-~l~~~~~~l~s~~~d-~v~vwd~~~~~~~~~~~~----~--~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iwd~~ 170 (437)
.|. |++-.|+.+..|+.+ .+.+|.+........... . ...-+..+|..|...+.. ++-.-.|+.|.++++.
T Consensus 17 ~vd~~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l~dsqi~~~~l~ 96 (877)
T KOG2063|consen 17 EVDLCVAAYGNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLILSDSQIAVHKLP 96 (877)
T ss_pred ccchHHHHhCCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchheecCCcceeeecC
Confidence 344 666669999999999 999999876421111111 0 001135677777766554 5555567788888887
Q ss_pred CCcc
Q 013717 171 PTKH 174 (437)
Q Consensus 171 ~~~~ 174 (437)
+-+.
T Consensus 97 ~~~~ 100 (877)
T KOG2063|consen 97 ELEP 100 (877)
T ss_pred cccc
Confidence 6654
No 496
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=77.83 E-value=6.7 Score=38.75 Aligned_cols=148 Identities=15% Similarity=0.117 Sum_probs=80.5
Q ss_pred EEEEeCCCeEEEecCCCCcccceeeEEeeCccccEEEEEEccCCCEEEEEeCCCcEEEEECCCCcc-ceEEeeeeccccc
Q 013717 266 VYTGSADRKIRVWAKPFNEKRHALIATLEKHKSAVNALALSDDGTVLFSGACDRSILVWDREDSAN-HMVVTGALRGHGK 344 (437)
Q Consensus 266 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~~~ 344 (437)
+..|+.++.+.++.-..+................+.++.+++. .+..|.-||++-.|--.-... .......+.....
T Consensus 550 ic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~--Slgagl~dgt~a~y~rap~gSwd~ep~~~~~~g~l 627 (925)
T KOG3522|consen 550 ICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG--SLGAGLIDGTLAVYGRAPSGSWDGEPNISIPTGSL 627 (925)
T ss_pred ccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc--ccccCccCCccccccCCCCCCCCCCCccccccCCc
Confidence 7788999999999654222222222223334456677777653 355555666665543221100 0001111112344
Q ss_pred ceEEEEeeCCEEEEEeCCCcEEEeeCCCCCCeeeeeeecCCCCCeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717 345 AILCLINVAGLLMSGSADRTVRIWQRGSDGRFGCLAVLEGHTKPVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 345 ~i~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
++....+..+.++ ++.+|.|.++...+...-........|...|+++.....+ .+++-++. -.+++++.++
T Consensus 628 Pvrsla~~ed~~w-as~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~g-----VwvafasG-~~~rlfhtet 698 (925)
T KOG3522|consen 628 PVRSLAFQEDFVW-ASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNG-----VWVAFASG-DEERLFHTET 698 (925)
T ss_pred cccchhhhhceee-eecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCc-----eEEEEcCC-CEEEEecccc
Confidence 5566666666544 6789999999988755323333344566789999988877 23333333 3555554433
No 497
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=77.53 E-value=63 Score=30.24 Aligned_cols=30 Identities=13% Similarity=0.381 Sum_probs=23.5
Q ss_pred CeeEEEEEccCCCCceEEEEEecCCCcEEEEeecc
Q 013717 388 PVKSLTAVTEEGQNGVVSVFSGSLDGEIRAWQVSV 422 (437)
Q Consensus 388 ~v~~l~~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 422 (437)
.|..+...+... ++++...+|.|.+|++..
T Consensus 191 ~I~~v~~d~~r~-----~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 191 KIVQVAVDPSRR-----LLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp -EEEEEEETTTT-----EEEEEESSE-EEEEEE-S
T ss_pred ceeeEEecCCcC-----EEEEEeCCCcEEEEEEeC
Confidence 488888877763 899999999999999986
No 498
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=77.01 E-value=88 Score=32.27 Aligned_cols=65 Identities=9% Similarity=0.147 Sum_probs=42.8
Q ss_pred CCEEEEEecC-eEEEEeCCCCceeeeeccccCCCCcccEEEEEEeCCe--EEEEecCCeEEEEeCCCC
Q 013717 108 HNFLYAASSH-EINVYDRTGTTWTSINTFNDNDSSSGSVKSVTFCDGK--IFTAHQDCKIRVWQLTPT 172 (437)
Q Consensus 108 ~~~l~s~~~d-~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iwd~~~~ 172 (437)
...++.|... .+.+++................++..++..+.|.|+. ++.+=..|...+|.....
T Consensus 160 ~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~~~~~ti~~~~~~~~p~~~~~av~~~~g~ls~wS~~g~ 227 (1023)
T KOG2006|consen 160 FQLLAYGTPVGEVLLYSIDEANSSLVFSNRDDDTLTVPDNNSSWRPDQNGFAVTWEKGFLAFWSNQGN 227 (1023)
T ss_pred hhhheecccccceeehhhhhhccceeeecccCccccccccccCcCCccceeeeeecccceEEeccccc
Confidence 8899999988 8888887653222222222223455577777787766 666666788888876654
No 499
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=76.44 E-value=11 Score=20.99 Aligned_cols=26 Identities=12% Similarity=0.138 Sum_probs=21.0
Q ss_pred EEEEEeCCCcEEEEECCCCccceEEe
Q 013717 311 VLFSGACDRSILVWDREDSANHMVVT 336 (437)
Q Consensus 311 ~l~~~~~dg~i~i~d~~~~~~~~~~~ 336 (437)
.++.++.+|.|+-+|.++++......
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeee
Confidence 45666899999999999998766654
No 500
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=75.56 E-value=15 Score=33.64 Aligned_cols=169 Identities=15% Similarity=0.103 Sum_probs=91.9
Q ss_pred cceeeeec-CccCCeEEEEee--CCEEEEEecCeEEEEeCCCCceeeeeccccCCC-CcccEE-EEE-EeCCe-EEEEec
Q 013717 88 LCINSVQL-GHKLPIGCIAVH--HNFLYAASSHEINVYDRTGTTWTSINTFNDNDS-SSGSVK-SVT-FCDGK-IFTAHQ 160 (437)
Q Consensus 88 ~~~~~~~~-~h~~~V~~l~~~--~~~l~s~~~d~v~vwd~~~~~~~~~~~~~~~~~-h~~~v~-~l~-~~~~~-l~s~~~ 160 (437)
..+.+..+ .-...|..+-.. |+.|..-+..++.|+++.+...+..+-.....+ ....|+ .+. .+++. ++.++.
T Consensus 209 q~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~ 288 (733)
T COG4590 209 QQEIIRLLSVPFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE 288 (733)
T ss_pred hhhhhhhcCCCccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC
Confidence 33444444 445566666665 888887777788888888754433322211111 011222 122 22444 889999
Q ss_pred CCeEEEE-eCCCCcccccccccCccccceeeecCCCCeeEEeeccceeeecCCCcEEEEEeCC--CeEEEEECCCcEEEE
Q 013717 161 DCKIRVW-QLTPTKHHKLKTTLPTVNDRLLRFMLPNSYVTVRRHKKKLWIEHGDAVTGLAVNN--GLIYSVSWDKSLKIW 237 (437)
Q Consensus 161 dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~~~~~dg~i~iw 237 (437)
||-|.-| |+..+.. ..+... +.+.-...++..+.-.. +-+++-+..|++.++
T Consensus 289 dG~vsQWFdvr~~~~-p~l~h~------------------------R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f 343 (733)
T COG4590 289 DGLVSQWFDVRRDGQ-PHLNHI------------------------RNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSF 343 (733)
T ss_pred CCceeeeeeeecCCC-Ccceee------------------------eccccCcccceeeccccccceEEEEcCCCceeee
Confidence 9999888 4443321 111100 00011123333333322 667777888888888
Q ss_pred ECCCcceEEEeecccccEEEEEEecCCeEEEEeCCCeEEEecCCC
Q 013717 238 RASDLRCLESIKAHEDAVNAVAVSAGGTVYTGSADRKIRVWAKPF 282 (437)
Q Consensus 238 d~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~iwd~~~ 282 (437)
.....+.+-.-. --..+.-++++|.+.-+..-..|.++++.+++
T Consensus 344 ~st~~~~lL~~~-~~~~~~~~~~Sp~~~~Ll~e~~gki~~~~l~N 387 (733)
T COG4590 344 YSTSEKLLLFER-AYQAPQLVAMSPNQAYLLSEDQGKIRLAQLEN 387 (733)
T ss_pred ecccCcceehhh-hhcCcceeeeCcccchheeecCCceEEEEecC
Confidence 754444332222 23356778899998844455678899997764
Done!